Query 022736
Match_columns 293
No_of_seqs 194 out of 2034
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 10:17:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nij_A Hypothetical protein YJ 100.0 4.6E-32 1.6E-36 243.6 22.9 240 30-292 2-245 (318)
2 2wsm_A Hydrogenase expression/ 99.8 1.6E-19 5.4E-24 152.9 9.2 182 30-258 28-211 (221)
3 2www_A Methylmalonic aciduria 99.8 3.4E-19 1.2E-23 161.7 11.2 198 30-258 72-276 (349)
4 3p32_A Probable GTPase RV1496/ 99.8 7.4E-19 2.5E-23 159.9 9.2 195 30-258 77-281 (355)
5 1wf3_A GTP-binding protein; GT 99.8 1.2E-18 4.2E-23 154.9 9.7 164 30-258 5-170 (301)
6 3iev_A GTP-binding protein ERA 99.8 2.6E-18 8.7E-23 153.4 10.1 169 29-258 7-179 (308)
7 2p67_A LAO/AO transport system 99.7 9.5E-18 3.2E-22 151.7 13.3 198 29-258 53-258 (341)
8 4dhe_A Probable GTP-binding pr 99.7 2.1E-18 7.3E-23 145.9 7.1 187 20-259 17-209 (223)
9 3pqc_A Probable GTP-binding pr 99.7 6.8E-18 2.3E-22 139.2 9.6 176 19-258 10-191 (195)
10 1yrb_A ATP(GTP)binding protein 99.7 2.6E-17 8.8E-22 142.9 11.0 219 29-258 11-254 (262)
11 1svi_A GTP-binding protein YSX 99.7 3.2E-17 1.1E-21 135.5 10.5 173 20-257 11-191 (195)
12 1ega_A Protein (GTP-binding pr 99.7 4.1E-17 1.4E-21 145.1 11.7 167 29-258 5-172 (301)
13 2hf9_A Probable hydrogenase ni 99.7 6.1E-17 2.1E-21 137.4 8.1 183 30-257 36-220 (226)
14 3iby_A Ferrous iron transport 99.7 5.4E-17 1.8E-21 141.0 7.8 159 32-258 1-164 (256)
15 3i8s_A Ferrous iron transport 99.7 1.6E-16 5.5E-21 139.4 9.3 158 32-258 3-166 (274)
16 4dcu_A GTP-binding protein ENG 99.6 7.7E-16 2.6E-20 144.4 10.2 172 20-258 11-182 (456)
17 2qm8_A GTPase/ATPase; G protei 99.6 2.5E-15 8.7E-20 135.5 12.9 215 12-258 30-258 (337)
18 3k53_A Ferrous iron transport 99.6 7E-16 2.4E-20 135.0 8.2 160 31-258 2-163 (271)
19 3a1s_A Iron(II) transport prot 99.6 9E-16 3.1E-20 133.4 8.5 160 31-258 4-164 (258)
20 2hjg_A GTP-binding protein ENG 99.6 1.4E-15 4.8E-20 141.9 9.9 160 32-258 3-162 (436)
21 1mky_A Probable GTP-binding pr 99.6 9.9E-16 3.4E-20 143.1 6.5 161 32-257 1-162 (439)
22 3gee_A MNME, tRNA modification 99.6 1.8E-15 6.2E-20 142.2 7.1 160 35-259 236-396 (476)
23 3b1v_A Ferrous iron uptake tra 99.6 4.2E-15 1.4E-19 130.1 8.1 157 32-258 3-161 (272)
24 2qpt_A EH domain-containing pr 99.6 7.6E-15 2.6E-19 140.4 10.3 153 30-202 63-234 (550)
25 2nzj_A GTP-binding protein REM 99.6 4.5E-14 1.6E-18 114.0 12.7 156 32-257 4-165 (175)
26 4bas_A ADP-ribosylation factor 99.6 3.1E-14 1.1E-18 117.7 11.9 160 29-257 14-185 (199)
27 2dyk_A GTP-binding protein; GT 99.5 4.6E-15 1.6E-19 118.3 6.4 158 32-257 1-158 (161)
28 4dcu_A GTP-binding protein ENG 99.5 7.3E-15 2.5E-19 137.8 8.4 169 30-256 193-364 (456)
29 2qtf_A Protein HFLX, GTP-bindi 99.5 1.9E-14 6.6E-19 130.9 10.0 170 29-258 176-351 (364)
30 2gj8_A MNME, tRNA modification 99.5 3E-15 1E-19 121.9 3.9 156 33-258 5-163 (172)
31 2fg5_A RAB-22B, RAS-related pr 99.5 2.2E-14 7.7E-19 118.4 9.0 160 30-258 21-183 (192)
32 3q72_A GTP-binding protein RAD 99.5 1.7E-14 5.7E-19 115.7 7.5 153 34-257 4-160 (166)
33 1f6b_A SAR1; gtpases, N-termin 99.5 3E-14 1E-18 118.6 8.9 167 31-257 24-195 (198)
34 2wjg_A FEOB, ferrous iron tran 99.5 3.1E-14 1.1E-18 116.7 8.9 159 31-258 6-166 (188)
35 2wji_A Ferrous iron transport 99.5 1.1E-14 3.7E-19 117.5 5.9 157 32-257 3-161 (165)
36 2hjg_A GTP-binding protein ENG 99.5 9E-15 3.1E-19 136.4 5.8 167 31-255 174-343 (436)
37 2bov_A RAla, RAS-related prote 99.5 3.5E-14 1.2E-18 118.0 8.8 159 29-257 11-173 (206)
38 3geh_A MNME, tRNA modification 99.5 6E-15 2.1E-19 138.2 4.2 155 35-259 227-382 (462)
39 3tw8_B RAS-related protein RAB 99.5 8.6E-14 2.9E-18 112.9 10.4 155 31-257 8-167 (181)
40 2gf9_A RAS-related protein RAB 99.5 9.4E-14 3.2E-18 114.2 10.8 158 31-257 21-181 (189)
41 2g6b_A RAS-related protein RAB 99.5 1.2E-13 4.2E-18 112.1 11.0 109 121-258 60-171 (180)
42 1mky_A Probable GTP-binding pr 99.5 3.3E-14 1.1E-18 132.7 8.4 168 31-256 179-350 (439)
43 2il1_A RAB12; G-protein, GDP, 99.5 1.3E-13 4.3E-18 114.0 11.1 109 121-257 75-186 (192)
44 1u8z_A RAS-related protein RAL 99.5 3.8E-14 1.3E-18 113.4 7.7 108 121-257 52-163 (168)
45 1zj6_A ADP-ribosylation factor 99.5 2.4E-13 8.3E-18 111.5 12.6 160 30-259 14-176 (187)
46 1kao_A RAP2A; GTP-binding prot 99.5 2.9E-14 9.9E-19 113.9 6.8 109 121-257 51-162 (167)
47 2qu8_A Putative nucleolar GTP- 99.5 9.5E-14 3.2E-18 118.0 10.2 165 30-257 27-201 (228)
48 2h57_A ADP-ribosylation factor 99.5 1.1E-13 3.7E-18 113.9 10.2 159 30-258 19-184 (190)
49 2xtp_A GTPase IMAP family memb 99.5 2.6E-14 8.8E-19 124.0 6.7 170 30-257 20-204 (260)
50 1zbd_A Rabphilin-3A; G protein 99.5 1.3E-13 4.5E-18 114.5 10.8 108 121-257 57-167 (203)
51 2a9k_A RAS-related protein RAL 99.5 4.6E-14 1.6E-18 115.2 7.7 109 121-257 66-177 (187)
52 1lnz_A SPO0B-associated GTP-bi 99.5 9.7E-15 3.3E-19 131.7 4.0 160 32-258 158-327 (342)
53 1wms_A RAB-9, RAB9, RAS-relate 99.5 3.5E-13 1.2E-17 109.1 12.8 109 121-258 56-171 (177)
54 1xzp_A Probable tRNA modificat 99.5 4.6E-15 1.6E-19 139.6 1.8 157 33-258 244-402 (482)
55 3t5g_A GTP-binding protein RHE 99.5 4.7E-14 1.6E-18 114.9 7.6 158 31-257 5-165 (181)
56 3tkl_A RAS-related protein RAB 99.5 3.9E-13 1.3E-17 110.7 13.1 158 31-257 15-175 (196)
57 1z08_A RAS-related protein RAB 99.5 4.1E-13 1.4E-17 107.8 12.9 108 121-257 55-165 (170)
58 1z2a_A RAS-related protein RAB 99.5 1.8E-13 6.2E-18 109.6 10.8 105 121-257 54-163 (168)
59 1c1y_A RAS-related protein RAP 99.5 1E-13 3.5E-18 110.9 9.3 109 121-257 51-163 (167)
60 3sjy_A Translation initiation 99.5 2.5E-13 8.7E-18 125.3 13.0 112 121-258 75-189 (403)
61 2h17_A ADP-ribosylation factor 99.5 9.4E-14 3.2E-18 113.5 8.9 158 30-257 19-179 (181)
62 1z0j_A RAB-22, RAS-related pro 99.5 9.3E-14 3.2E-18 111.5 8.6 109 121-258 55-166 (170)
63 2efe_B Small GTP-binding prote 99.5 4.9E-13 1.7E-17 108.6 12.9 109 121-258 61-172 (181)
64 1z0f_A RAB14, member RAS oncog 99.5 1.4E-13 4.8E-18 111.4 9.6 158 31-257 14-174 (179)
65 1upt_A ARL1, ADP-ribosylation 99.5 4.4E-13 1.5E-17 107.7 12.4 158 31-258 6-166 (171)
66 1ek0_A Protein (GTP-binding pr 99.5 1.1E-13 3.7E-18 111.1 8.7 110 121-257 52-165 (170)
67 1ky3_A GTP-binding protein YPT 99.5 6.9E-13 2.4E-17 107.6 13.5 110 121-257 58-174 (182)
68 2fh5_B SR-beta, signal recogni 99.5 1.4E-13 4.9E-18 115.3 9.6 175 31-257 6-212 (214)
69 2p5s_A RAS and EF-hand domain 99.5 3.1E-13 1.1E-17 112.1 11.6 161 30-257 26-193 (199)
70 1r2q_A RAS-related protein RAB 99.5 1.1E-13 3.8E-18 111.0 8.5 109 121-258 55-166 (170)
71 3q85_A GTP-binding protein REM 99.5 2.3E-13 7.9E-18 109.3 10.4 110 121-257 51-163 (169)
72 2oil_A CATX-8, RAS-related pro 99.5 4.8E-13 1.7E-17 110.2 12.5 105 121-257 74-184 (193)
73 1fzq_A ADP-ribosylation factor 99.5 1.6E-13 5.6E-18 112.3 9.5 158 31-258 15-175 (181)
74 1g16_A RAS-related protein SEC 99.5 1.6E-13 5.6E-18 110.1 9.2 108 121-258 52-162 (170)
75 2lkc_A Translation initiation 99.5 1E-13 3.5E-18 112.4 8.0 162 29-257 5-167 (178)
76 2erx_A GTP-binding protein DI- 99.5 2.5E-13 8.4E-18 109.1 10.2 109 121-258 51-164 (172)
77 2hup_A RAS-related protein RAB 99.5 5.6E-13 1.9E-17 111.0 12.6 109 121-257 78-189 (201)
78 3bc1_A RAS-related protein RAB 99.5 1.8E-12 6.2E-17 106.1 15.5 108 121-257 70-181 (195)
79 3t1o_A Gliding protein MGLA; G 99.5 5.1E-13 1.7E-17 109.9 12.2 110 121-257 74-188 (198)
80 2ce2_X GTPase HRAS; signaling 99.5 9.1E-14 3.1E-18 110.8 7.3 107 121-257 51-161 (166)
81 1vg8_A RAS-related protein RAB 99.5 7.3E-13 2.5E-17 110.1 12.9 158 31-257 7-171 (207)
82 3clv_A RAB5 protein, putative; 99.5 8.2E-13 2.8E-17 109.0 13.1 107 121-257 93-200 (208)
83 1m2o_B GTP-binding protein SAR 99.5 5.1E-14 1.7E-18 116.3 5.7 164 31-257 22-188 (190)
84 1ksh_A ARF-like protein 2; sma 99.5 1.1E-13 3.8E-18 113.3 7.6 159 30-258 16-177 (186)
85 2y8e_A RAB-protein 6, GH09086P 99.5 5.8E-13 2E-17 107.7 11.8 109 121-258 63-174 (179)
86 3oes_A GTPase rhebl1; small GT 99.5 8.8E-14 3E-18 115.7 7.0 154 31-257 23-183 (201)
87 1pui_A ENGB, probable GTP-bind 99.5 1.3E-13 4.6E-18 115.1 8.2 184 11-258 3-196 (210)
88 4dsu_A GTPase KRAS, isoform 2B 99.5 6.6E-14 2.3E-18 114.5 6.1 106 122-257 53-162 (189)
89 1zd9_A ADP-ribosylation factor 99.4 1.1E-13 3.9E-18 113.8 7.5 159 31-258 21-182 (188)
90 2bcg_Y Protein YP2, GTP-bindin 99.4 1.2E-12 4E-17 109.0 13.7 108 121-257 57-167 (206)
91 2a5j_A RAS-related protein RAB 99.4 3.5E-13 1.2E-17 111.0 10.2 108 121-257 70-180 (191)
92 1moz_A ARL1, ADP-ribosylation 99.4 9E-14 3.1E-18 113.3 6.6 158 30-257 16-176 (183)
93 1r8s_A ADP-ribosylation factor 99.4 6.2E-13 2.1E-17 106.2 11.4 114 120-258 43-159 (164)
94 2fn4_A P23, RAS-related protei 99.4 2.7E-13 9.1E-18 110.0 9.2 158 31-257 8-168 (181)
95 3lvq_E ARF-GAP with SH3 domain 99.4 4.3E-13 1.5E-17 127.0 12.0 155 33-257 323-480 (497)
96 3con_A GTPase NRAS; structural 99.4 4.3E-13 1.5E-17 110.1 10.3 107 121-257 69-179 (190)
97 2b6h_A ADP-ribosylation factor 99.4 6.9E-13 2.4E-17 109.6 11.6 160 29-258 26-188 (192)
98 3dz8_A RAS-related protein RAB 99.4 1.5E-13 5.2E-18 113.2 7.5 109 120-257 71-182 (191)
99 3reg_A RHO-like small GTPase; 99.4 6.1E-13 2.1E-17 109.7 10.9 113 121-258 71-185 (194)
100 3lxw_A GTPase IMAP family memb 99.4 3.5E-13 1.2E-17 116.2 9.7 123 32-201 21-154 (247)
101 2hxs_A RAB-26, RAS-related pro 99.4 1.4E-12 4.9E-17 105.5 12.7 109 121-258 56-170 (178)
102 1x3s_A RAS-related protein RAB 99.4 3.1E-13 1.1E-17 111.1 8.6 104 121-257 64-174 (195)
103 1wb1_A Translation elongation 99.4 1.9E-13 6.6E-18 128.8 8.3 113 121-257 73-185 (482)
104 2e87_A Hypothetical protein PH 99.4 6.3E-13 2.2E-17 120.7 10.9 164 30-257 165-332 (357)
105 2aka_B Dynamin-1; fusion prote 99.4 2.3E-13 7.7E-18 120.2 7.5 115 120-257 124-249 (299)
106 3cph_A RAS-related protein SEC 99.4 1.1E-12 3.9E-17 109.4 11.4 107 121-257 69-178 (213)
107 4djt_A GTP-binding nuclear pro 99.4 1.4E-13 4.9E-18 115.7 5.8 108 121-257 61-171 (218)
108 2ew1_A RAS-related protein RAB 99.4 2.8E-12 9.5E-17 107.0 13.6 158 31-257 25-185 (201)
109 2o52_A RAS-related protein RAB 99.4 2.4E-13 8.2E-18 113.1 7.0 108 121-257 74-184 (200)
110 2bme_A RAB4A, RAS-related prot 99.4 2.5E-12 8.5E-17 105.0 13.0 108 121-257 59-169 (186)
111 3qq5_A Small GTP-binding prote 99.4 4.4E-14 1.5E-18 130.8 2.7 161 31-258 33-193 (423)
112 2gf0_A GTP-binding protein DI- 99.4 1.2E-12 4E-17 108.1 11.0 108 121-258 56-168 (199)
113 2yc2_C IFT27, small RAB-relate 99.4 2.7E-13 9.4E-18 112.6 7.1 108 121-257 73-188 (208)
114 1z06_A RAS-related protein RAB 99.4 1.8E-13 6.1E-18 112.5 5.8 108 121-257 69-184 (189)
115 3j2k_7 ERF3, eukaryotic polype 99.4 1.1E-12 3.7E-17 122.4 11.7 121 120-253 94-217 (439)
116 2fu5_C RAS-related protein RAB 99.4 8.4E-13 2.9E-17 107.6 9.4 108 121-257 57-167 (183)
117 2x77_A ADP-ribosylation factor 99.4 8.7E-13 3E-17 108.2 9.6 159 30-258 20-181 (189)
118 3cpj_B GTP-binding protein YPT 99.4 8.3E-13 2.8E-17 111.7 9.7 108 121-257 62-172 (223)
119 3t5d_A Septin-7; GTP-binding p 99.4 3.9E-13 1.3E-17 117.7 7.8 87 151-258 114-201 (274)
120 4gzl_A RAS-related C3 botulinu 99.4 4.3E-13 1.5E-17 112.0 7.4 112 121-257 78-201 (204)
121 2gco_A H9, RHO-related GTP-bin 99.4 3.8E-12 1.3E-16 105.8 13.1 112 121-257 73-196 (201)
122 3cbq_A GTP-binding protein REM 99.4 1.3E-12 4.4E-17 108.3 10.2 106 121-257 72-184 (195)
123 2f7s_A C25KG, RAS-related prot 99.4 1.3E-12 4.3E-17 109.8 10.3 106 120-257 83-195 (217)
124 3gj0_A GTP-binding nuclear pro 99.4 1.8E-13 6.1E-18 115.5 5.0 153 32-258 15-172 (221)
125 2fv8_A H6, RHO-related GTP-bin 99.4 1.7E-12 5.9E-17 108.3 11.0 118 121-258 73-197 (207)
126 2cxx_A Probable GTP-binding pr 99.4 1.4E-12 4.7E-17 106.8 10.2 123 122-258 45-181 (190)
127 3kkq_A RAS-related protein M-R 99.4 4.4E-13 1.5E-17 109.3 7.2 106 123-257 68-178 (183)
128 3bwd_D RAC-like GTP-binding pr 99.4 2.3E-12 8E-17 104.6 10.9 113 121-258 56-178 (182)
129 2atv_A RERG, RAS-like estrogen 99.4 5.5E-13 1.9E-17 110.3 6.9 107 121-257 76-187 (196)
130 2iwr_A Centaurin gamma 1; ANK 99.4 1.1E-12 3.8E-17 106.4 8.3 106 121-257 54-165 (178)
131 2j37_W Signal recognition part 99.4 1.1E-11 3.8E-16 116.9 16.1 200 30-258 99-310 (504)
132 1mh1_A RAC1; GTP-binding, GTPa 99.4 1.7E-12 5.8E-17 105.7 9.1 114 121-259 53-178 (186)
133 2atx_A Small GTP binding prote 99.4 5.1E-12 1.8E-16 104.0 12.1 113 121-258 66-190 (194)
134 3tr5_A RF-3, peptide chain rel 99.4 6.9E-12 2.4E-16 119.3 13.8 70 120-202 81-150 (528)
135 1jwy_B Dynamin A GTPase domain 99.4 1.7E-13 5.9E-18 121.9 2.5 118 120-257 130-258 (315)
136 3ihw_A Centg3; RAS, centaurin, 99.3 4E-12 1.4E-16 104.3 10.5 106 121-257 67-176 (184)
137 2q3h_A RAS homolog gene family 99.3 6.2E-12 2.1E-16 104.2 11.4 112 121-257 68-191 (201)
138 1nrj_B SR-beta, signal recogni 99.3 2.4E-12 8.1E-17 108.2 8.8 196 29-292 9-215 (218)
139 2j1l_A RHO-related GTP-binding 99.3 5.6E-12 1.9E-16 105.9 10.7 112 121-257 82-205 (214)
140 3o47_A ADP-ribosylation factor 99.3 3.4E-12 1.2E-16 114.7 9.8 155 33-257 166-323 (329)
141 1s0u_A EIF-2-gamma, translatio 99.3 5.7E-12 2E-16 116.4 11.3 112 121-258 81-195 (408)
142 3izy_P Translation initiation 99.3 3.2E-13 1.1E-17 128.2 2.6 163 31-258 3-165 (537)
143 1kk1_A EIF2gamma; initiation o 99.3 6.1E-12 2.1E-16 116.3 10.8 112 121-258 83-197 (410)
144 3izq_1 HBS1P, elongation facto 99.3 1.7E-12 5.8E-17 125.6 6.8 116 120-251 244-362 (611)
145 3dpu_A RAB family protein; roc 99.3 8.7E-12 3E-16 119.1 11.5 107 120-258 97-205 (535)
146 2x2e_A Dynamin-1; nitration, h 99.3 8.3E-13 2.8E-17 119.8 4.2 116 120-257 129-254 (353)
147 2j0v_A RAC-like GTP-binding pr 99.3 5.8E-12 2E-16 105.3 8.9 113 121-258 57-177 (212)
148 2ged_A SR-beta, signal recogni 99.3 1E-11 3.4E-16 102.1 10.1 121 30-203 46-173 (193)
149 2ywe_A GTP-binding protein LEP 99.3 1.4E-11 4.9E-16 118.4 12.6 110 121-259 73-182 (600)
150 4dkx_A RAS-related protein RAB 99.3 1.7E-11 5.9E-16 103.5 11.7 108 121-257 62-172 (216)
151 3th5_A RAS-related C3 botulinu 99.0 2.3E-13 8E-18 113.3 0.0 121 121-257 78-201 (204)
152 3p26_A Elongation factor 1 alp 99.3 5.6E-12 1.9E-16 119.0 9.5 117 119-251 109-228 (483)
153 3c5c_A RAS-like protein 12; GD 99.3 9.7E-12 3.3E-16 102.1 9.6 107 121-257 69-182 (187)
154 2elf_A Protein translation elo 99.3 2.5E-12 8.4E-17 117.3 6.5 149 32-257 21-176 (370)
155 3l0i_B RAS-related protein RAB 99.3 3.8E-13 1.3E-17 111.6 0.7 106 121-258 82-193 (199)
156 3mca_A HBS1, elongation factor 99.3 1.8E-12 6.2E-17 125.0 5.3 114 120-249 254-371 (592)
157 3r7w_A Gtpase1, GTP-binding pr 99.3 1.8E-12 6.3E-17 115.3 4.7 121 34-201 5-130 (307)
158 1zun_B Sulfate adenylate trans 99.3 8E-12 2.7E-16 116.4 8.9 108 120-250 103-213 (434)
159 1g7s_A Translation initiation 99.3 3.4E-12 1.2E-16 122.9 6.4 124 121-257 70-214 (594)
160 3zvr_A Dynamin-1; hydrolase, D 99.3 1E-11 3.5E-16 121.9 9.7 116 120-257 149-274 (772)
161 3q3j_B RHO-related GTP-binding 99.3 1.5E-11 5.2E-16 103.4 9.4 113 121-258 75-200 (214)
162 2c78_A Elongation factor TU-A; 99.3 6.8E-12 2.3E-16 115.8 7.7 106 119-247 73-180 (405)
163 2g3y_A GTP-binding protein GEM 99.3 2E-11 6.9E-16 102.7 9.7 109 121-257 87-199 (211)
164 1wxq_A GTP-binding protein; st 99.3 6.1E-12 2.1E-16 115.7 7.1 110 35-165 3-114 (397)
165 1m7b_A RND3/RHOE small GTP-bin 99.3 2.1E-11 7.2E-16 99.6 9.5 112 121-257 55-179 (184)
166 1gwn_A RHO-related GTP-binding 99.2 4.9E-11 1.7E-15 99.6 11.6 112 121-257 76-200 (205)
167 3lxx_A GTPase IMAP family memb 99.2 1.1E-11 3.7E-16 106.1 7.6 133 27-202 24-161 (239)
168 1f60_A Elongation factor EEF1A 99.2 2.8E-11 9.6E-16 113.4 11.0 114 120-251 84-202 (458)
169 1udx_A The GTP-binding protein 99.2 2.4E-11 8.2E-16 112.2 10.0 162 33-257 158-321 (416)
170 3cb4_D GTP-binding protein LEP 99.2 3.5E-11 1.2E-15 115.9 10.4 126 121-276 71-196 (599)
171 1zo1_I IF2, translation initia 99.2 2.5E-11 8.7E-16 114.3 9.2 161 30-257 2-163 (501)
172 3dm5_A SRP54, signal recogniti 99.2 2.6E-10 8.7E-15 105.6 15.7 149 31-201 99-254 (443)
173 1jny_A EF-1-alpha, elongation 99.2 2.4E-11 8E-16 113.2 8.7 115 119-251 82-203 (435)
174 2j69_A Bacterial dynamin-like 99.2 1E-11 3.5E-16 121.9 5.3 72 121-201 174-245 (695)
175 2xex_A Elongation factor G; GT 99.2 6.1E-11 2.1E-15 116.4 10.3 174 29-257 7-181 (693)
176 3llu_A RAS-related GTP-binding 99.2 3.3E-11 1.1E-15 99.6 7.1 118 120-256 68-192 (196)
177 2wkq_A NPH1-1, RAS-related C3 99.2 4.3E-11 1.5E-15 106.7 8.3 113 121-258 203-327 (332)
178 1d2e_A Elongation factor TU (E 99.2 3E-11 1E-15 111.2 7.4 116 119-257 64-191 (397)
179 2cjw_A GTP-binding protein GEM 99.2 7E-11 2.4E-15 97.6 8.6 108 122-257 57-168 (192)
180 4a9a_A Ribosome-interacting GT 99.2 1.9E-11 6.4E-16 111.2 5.4 125 29-198 69-194 (376)
181 2zej_A Dardarin, leucine-rich 99.2 2.9E-11 1E-15 98.9 6.0 113 120-257 55-174 (184)
182 2v3c_C SRP54, signal recogniti 99.1 1.1E-10 3.7E-15 108.4 9.6 194 30-256 97-306 (432)
183 1r5b_A Eukaryotic peptide chai 99.1 4.9E-11 1.7E-15 112.0 6.5 115 120-251 120-242 (467)
184 2f9l_A RAB11B, member RAS onco 99.1 2.9E-10 9.8E-15 94.1 10.2 107 122-257 55-164 (199)
185 2h5e_A Peptide chain release f 99.1 1.1E-09 3.6E-14 104.3 15.3 71 119-202 80-150 (529)
186 1dar_A EF-G, elongation factor 99.1 3.9E-10 1.3E-14 110.7 11.1 147 30-219 10-157 (691)
187 1h65_A Chloroplast outer envel 99.1 1.4E-10 4.7E-15 101.1 6.5 123 31-202 38-170 (270)
188 3t34_A Dynamin-related protein 99.1 3.3E-10 1.1E-14 102.9 9.0 26 30-55 32-57 (360)
189 3def_A T7I23.11 protein; chlor 99.0 2.4E-10 8.2E-15 99.2 6.4 24 31-54 35-58 (262)
190 1oix_A RAS-related protein RAB 99.0 3.3E-09 1.1E-13 87.3 13.0 107 122-257 79-188 (191)
191 2qag_C Septin-7; cell cycle, c 99.0 4.8E-10 1.6E-14 103.5 8.1 44 11-55 11-54 (418)
192 1xjc_A MOBB protein homolog; s 99.0 5.6E-10 1.9E-14 90.3 7.1 95 31-131 3-107 (169)
193 3avx_A Elongation factor TS, e 99.0 1E-09 3.4E-14 111.3 9.4 116 119-257 357-482 (1289)
194 3kl4_A SRP54, signal recogniti 99.0 4E-09 1.4E-13 97.6 12.3 149 30-200 95-252 (433)
195 2qag_A Septin-2, protein NEDD5 99.0 1.6E-10 5.5E-15 105.0 2.6 42 12-54 18-59 (361)
196 2rdo_7 EF-G, elongation factor 99.0 6.7E-09 2.3E-13 102.1 14.0 142 30-202 8-150 (704)
197 2qnr_A Septin-2, protein NEDD5 98.9 1.5E-09 5.2E-14 96.1 8.1 39 15-54 2-40 (301)
198 3c5h_A Glucocorticoid receptor 98.9 1.6E-09 5.6E-14 93.5 7.8 84 152-257 162-251 (255)
199 3ec1_A YQEH GTPase; atnos1, at 98.9 1.4E-10 4.7E-15 105.7 1.0 123 34-204 164-292 (369)
200 2dy1_A Elongation factor G; tr 98.9 4.8E-09 1.6E-13 102.5 10.6 67 120-199 73-139 (665)
201 3h2y_A GTPase family protein; 98.8 2.2E-10 7.7E-15 104.3 -1.4 132 34-217 162-300 (368)
202 1j8m_F SRP54, signal recogniti 98.7 7.5E-08 2.6E-12 85.0 11.9 149 31-200 97-253 (297)
203 2yhs_A FTSY, cell division pro 98.7 3.3E-07 1.1E-11 85.8 16.2 149 31-199 292-451 (503)
204 3vqt_A RF-3, peptide chain rel 98.7 4.3E-08 1.5E-12 93.6 10.1 137 31-202 30-168 (548)
205 2xxa_A Signal recognition part 98.7 1.4E-07 4.9E-12 87.4 12.6 150 30-200 98-254 (433)
206 3j25_A Tetracycline resistance 98.7 8.8E-09 3E-13 100.2 4.4 133 32-202 2-135 (638)
207 2ffh_A Protein (FFH); SRP54, s 98.7 2.9E-07 9.9E-12 84.9 14.3 148 31-200 97-251 (425)
208 1n0u_A EF-2, elongation factor 98.7 8.5E-09 2.9E-13 103.2 4.0 68 120-200 97-164 (842)
209 1np6_A Molybdopterin-guanine d 98.7 9E-09 3.1E-13 83.7 3.4 41 30-70 4-46 (174)
210 1jal_A YCHF protein; nucleotid 98.6 5E-08 1.7E-12 88.2 7.0 103 34-164 4-108 (363)
211 1zu4_A FTSY; GTPase, signal re 98.6 7.3E-07 2.5E-11 79.4 14.4 154 30-200 103-268 (320)
212 3r7w_B Gtpase2, GTP-binding pr 98.6 9.2E-08 3.1E-12 85.1 7.5 68 121-202 46-122 (331)
213 1vma_A Cell division protein F 98.6 1.1E-06 3.6E-11 77.9 14.3 152 30-200 102-263 (306)
214 2px0_A Flagellar biosynthesis 98.5 6.5E-07 2.2E-11 78.9 11.8 145 31-200 104-253 (296)
215 1ls1_A Signal recognition part 98.5 3.3E-06 1.1E-10 74.3 15.7 148 31-200 97-251 (295)
216 3e70_C DPA, signal recognition 98.5 1.2E-06 4.3E-11 78.2 12.6 151 30-199 127-281 (328)
217 3sop_A Neuronal-specific septi 98.5 7.9E-08 2.7E-12 83.7 4.4 22 33-54 3-24 (270)
218 2ohf_A Protein OLA1, GTP-bindi 98.5 1.3E-07 4.6E-12 86.3 5.5 104 33-164 23-128 (396)
219 2qag_B Septin-6, protein NEDD5 98.4 3.7E-07 1.3E-11 84.1 7.3 42 11-54 16-64 (427)
220 4fn5_A EF-G 1, elongation fact 98.4 2.8E-07 9.6E-12 90.7 6.1 142 30-202 11-153 (709)
221 1tq4_A IIGP1, interferon-induc 98.3 8.7E-07 3E-11 81.5 7.6 24 31-54 68-91 (413)
222 1puj_A YLQF, conserved hypothe 98.3 6.3E-07 2.2E-11 78.4 5.2 35 32-70 120-154 (282)
223 2dby_A GTP-binding protein; GD 98.2 4.9E-07 1.7E-11 82.0 3.3 43 121-164 69-111 (368)
224 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 1.5E-07 5.3E-12 85.9 -0.2 106 32-164 20-127 (392)
225 1rj9_A FTSY, signal recognitio 98.2 7.8E-05 2.7E-09 65.7 17.1 149 31-200 101-261 (304)
226 4dzz_A Plasmid partitioning pr 98.2 2.4E-05 8.2E-10 64.3 12.7 148 33-218 2-157 (206)
227 3cwq_A Para family chromosome 98.2 5.1E-05 1.7E-09 63.1 14.4 141 35-218 4-148 (209)
228 3end_A Light-independent proto 98.1 1.8E-05 6.2E-10 69.6 11.6 43 28-70 37-81 (307)
229 3bfv_A CAPA1, CAPB2, membrane 98.1 3.3E-05 1.1E-09 67.0 11.8 41 30-70 80-123 (271)
230 1f5n_A Interferon-induced guan 98.1 2.6E-06 8.8E-11 81.7 4.7 26 29-54 35-60 (592)
231 3cnl_A YLQF, putative uncharac 98.0 3.2E-06 1.1E-10 73.2 3.3 34 33-70 100-133 (262)
232 3cio_A ETK, tyrosine-protein k 97.9 6.5E-05 2.2E-09 66.1 11.3 40 30-69 102-144 (299)
233 3la6_A Tyrosine-protein kinase 97.9 0.00014 4.6E-09 63.6 13.2 40 31-70 91-133 (286)
234 3b9q_A Chloroplast SRP recepto 97.9 0.00031 1.1E-08 61.8 15.1 38 31-68 99-138 (302)
235 2og2_A Putative signal recogni 97.9 0.00039 1.3E-08 62.7 15.3 38 31-68 156-195 (359)
236 3kjh_A CO dehydrogenase/acetyl 97.9 0.00014 4.7E-09 61.5 11.4 35 35-69 3-39 (254)
237 3szr_A Interferon-induced GTP- 97.8 5.6E-05 1.9E-09 73.0 9.8 46 9-54 8-67 (608)
238 2ph1_A Nucleotide-binding prot 97.8 0.00024 8.1E-09 61.0 12.7 37 34-70 21-59 (262)
239 3k9g_A PF-32 protein; ssgcid, 97.8 0.00037 1.3E-08 59.8 13.3 42 29-70 24-67 (267)
240 3ea0_A ATPase, para family; al 97.8 0.0017 5.9E-08 54.5 16.9 38 32-69 4-45 (245)
241 1wcv_1 SOJ, segregation protei 97.8 0.00022 7.6E-09 60.9 11.4 40 31-70 5-47 (257)
242 1hyq_A MIND, cell division inh 97.7 0.00036 1.2E-08 59.6 12.5 36 34-69 5-42 (263)
243 2ihy_A ABC transporter, ATP-bi 97.6 2E-05 6.7E-10 68.8 2.9 48 8-55 18-70 (279)
244 3iqw_A Tail-anchored protein t 97.6 0.0017 5.9E-08 57.8 15.6 41 30-70 14-56 (334)
245 1g3q_A MIND ATPase, cell divis 97.6 0.00066 2.3E-08 56.9 11.9 37 33-69 3-42 (237)
246 2pcj_A ABC transporter, lipopr 97.6 2.6E-05 8.9E-10 65.7 3.0 44 11-54 4-52 (224)
247 4g1u_C Hemin import ATP-bindin 97.6 3.3E-05 1.1E-09 66.8 3.6 45 10-54 10-59 (266)
248 3q9l_A Septum site-determining 97.6 0.00057 2E-08 58.1 10.8 37 33-69 3-42 (260)
249 3q5d_A Atlastin-1; G protein, 97.5 3E-05 1E-09 71.9 2.8 27 28-54 63-89 (447)
250 1cp2_A CP2, nitrogenase iron p 97.5 0.0015 5.2E-08 55.8 13.3 38 33-70 2-41 (269)
251 2olj_A Amino acid ABC transpor 97.5 3.4E-05 1.1E-09 66.7 2.7 45 11-55 24-73 (263)
252 1b0u_A Histidine permease; ABC 97.5 3.3E-05 1.1E-09 66.7 2.7 45 11-55 6-55 (262)
253 1ji0_A ABC transporter; ATP bi 97.5 4.1E-05 1.4E-09 65.2 3.1 45 11-55 6-55 (240)
254 1g6h_A High-affinity branched- 97.5 3.9E-05 1.3E-09 66.0 2.9 45 11-55 7-56 (257)
255 3fvq_A Fe(3+) IONS import ATP- 97.5 4.6E-05 1.6E-09 68.6 3.1 45 11-55 4-53 (359)
256 1v43_A Sugar-binding transport 97.5 5.3E-05 1.8E-09 68.6 3.4 49 6-54 5-59 (372)
257 1sgw_A Putative ABC transporte 97.5 5.1E-05 1.7E-09 63.5 3.0 44 11-55 10-58 (214)
258 2nq2_C Hypothetical ABC transp 97.5 5E-05 1.7E-09 65.2 3.1 45 11-55 4-54 (253)
259 2zu0_C Probable ATP-dependent 97.5 4.8E-05 1.6E-09 65.8 2.9 44 11-54 20-68 (267)
260 2xj4_A MIPZ; replication, cell 97.5 0.0014 4.9E-08 56.8 12.4 37 33-69 5-44 (286)
261 1vpl_A ABC transporter, ATP-bi 97.5 4.4E-05 1.5E-09 65.7 2.6 45 11-55 15-64 (256)
262 3gfo_A Cobalt import ATP-bindi 97.5 6E-05 2E-09 65.5 3.4 45 11-55 7-57 (275)
263 2d2e_A SUFC protein; ABC-ATPas 97.5 5.7E-05 2E-09 64.7 3.2 44 11-54 3-51 (250)
264 1mv5_A LMRA, multidrug resista 97.4 6.7E-05 2.3E-09 64.0 3.2 43 12-54 2-50 (243)
265 2cbz_A Multidrug resistance-as 97.4 7.3E-05 2.5E-09 63.5 3.2 44 11-54 3-53 (237)
266 2yz2_A Putative ABC transporte 97.4 6.3E-05 2.2E-09 65.0 2.7 46 10-55 1-56 (266)
267 2ixe_A Antigen peptide transpo 97.4 9.6E-05 3.3E-09 64.1 3.7 45 11-55 16-68 (271)
268 2pze_A Cystic fibrosis transme 97.4 0.0001 3.4E-09 62.3 3.7 45 11-55 6-57 (229)
269 1z47_A CYSA, putative ABC-tran 97.3 0.00012 4E-09 66.0 4.0 47 8-54 11-63 (355)
270 2oze_A ORF delta'; para, walke 97.3 0.0013 4.4E-08 57.3 10.7 38 33-70 35-77 (298)
271 2ff7_A Alpha-hemolysin translo 97.3 8.6E-05 2.9E-09 63.5 2.9 44 12-55 8-58 (247)
272 3gd7_A Fusion complex of cysti 97.3 0.00014 5E-09 66.2 4.4 49 6-54 14-69 (390)
273 2afh_E Nitrogenase iron protei 97.3 0.002 7E-08 55.8 11.6 38 33-70 3-42 (289)
274 3t61_A Gluconokinase; PSI-biol 97.3 9.4E-05 3.2E-09 60.8 2.6 36 20-55 6-41 (202)
275 3tif_A Uncharacterized ABC tra 97.3 8E-05 2.7E-09 63.2 2.2 43 12-54 2-53 (235)
276 3qxc_A Dethiobiotin synthetase 97.3 0.0026 8.8E-08 54.1 11.3 37 29-65 18-57 (242)
277 2ghi_A Transport protein; mult 97.3 0.00014 4.7E-09 62.7 3.4 46 10-55 16-69 (260)
278 1htw_A HI0065; nucleotide-bind 97.2 4.1E-05 1.4E-09 60.9 -0.6 43 12-54 8-55 (158)
279 3rlf_A Maltose/maltodextrin im 97.2 0.00015 5E-09 65.9 3.0 44 11-54 3-51 (381)
280 3nh6_A ATP-binding cassette SU 97.2 0.00012 4.1E-09 64.6 2.1 45 11-55 53-103 (306)
281 3tui_C Methionine import ATP-b 97.2 0.00016 5.6E-09 65.2 2.8 46 10-55 23-77 (366)
282 2it1_A 362AA long hypothetical 97.1 0.0002 6.7E-09 64.7 3.2 45 11-55 3-52 (362)
283 2yyz_A Sugar ABC transporter, 97.1 0.00018 6.1E-09 64.9 2.9 44 11-54 3-51 (359)
284 1g29_1 MALK, maltose transport 97.1 0.0002 6.7E-09 65.0 3.2 45 11-55 3-52 (372)
285 1kgd_A CASK, peripheral plasma 97.1 0.00023 7.7E-09 57.5 3.1 23 33-55 6-28 (180)
286 2pjz_A Hypothetical protein ST 97.1 0.00016 5.6E-09 62.3 2.1 43 12-54 2-52 (263)
287 1zp6_A Hypothetical protein AT 97.1 0.00049 1.7E-08 55.7 4.8 23 33-55 10-32 (191)
288 3tr0_A Guanylate kinase, GMP k 97.0 0.00032 1.1E-08 57.4 3.3 24 32-55 7-30 (205)
289 2onk_A Molybdate/tungstate ABC 97.0 0.0002 7E-09 60.9 2.0 41 12-55 2-47 (240)
290 3lw7_A Adenylate kinase relate 97.0 0.00032 1.1E-08 55.5 3.0 20 33-52 2-21 (179)
291 1u0l_A Probable GTPase ENGC; p 97.0 0.00092 3.1E-08 58.7 6.2 83 151-256 83-168 (301)
292 3d31_A Sulfate/molybdate ABC t 97.0 0.00025 8.6E-09 63.7 2.5 43 12-55 2-49 (348)
293 3kb2_A SPBC2 prophage-derived 97.0 0.00033 1.1E-08 55.5 3.0 23 33-55 2-24 (173)
294 1oxx_K GLCV, glucose, ABC tran 97.0 0.00019 6.5E-09 64.6 1.7 44 11-54 3-53 (353)
295 3tau_A Guanylate kinase, GMP k 97.0 0.0004 1.4E-08 57.4 3.4 25 31-55 7-31 (208)
296 3ney_A 55 kDa erythrocyte memb 97.0 0.00041 1.4E-08 57.1 3.3 26 31-56 18-43 (197)
297 1lvg_A Guanylate kinase, GMP k 97.0 0.0003 1E-08 57.8 2.5 22 33-54 5-26 (198)
298 2b8t_A Thymidine kinase; deoxy 97.0 0.0015 5.1E-08 54.8 6.8 40 31-70 11-52 (223)
299 3a00_A Guanylate kinase, GMP k 97.0 0.00032 1.1E-08 56.9 2.6 22 34-55 3-24 (186)
300 2qi9_C Vitamin B12 import ATP- 97.0 0.00039 1.3E-08 59.4 3.2 41 11-55 4-49 (249)
301 2f1r_A Molybdopterin-guanine d 97.0 0.00032 1.1E-08 56.4 2.5 36 32-67 2-39 (171)
302 1qhx_A CPT, protein (chloramph 97.0 0.00042 1.4E-08 55.4 3.2 23 33-55 4-26 (178)
303 2rhm_A Putative kinase; P-loop 96.9 0.00055 1.9E-08 55.3 3.9 25 31-55 4-28 (193)
304 2yv5_A YJEQ protein; hydrolase 96.9 0.00071 2.4E-08 59.5 4.8 88 150-256 77-164 (302)
305 1kag_A SKI, shikimate kinase I 96.9 0.00036 1.2E-08 55.5 2.6 23 33-55 5-27 (173)
306 1byi_A Dethiobiotin synthase; 96.9 0.019 6.6E-07 47.3 13.4 33 33-65 2-37 (224)
307 1ukz_A Uridylate kinase; trans 96.9 0.00067 2.3E-08 55.5 4.0 28 28-55 11-38 (203)
308 2qor_A Guanylate kinase; phosp 96.9 0.00043 1.5E-08 56.9 2.8 26 31-56 11-36 (204)
309 1ye8_A Protein THEP1, hypothet 96.9 0.00054 1.9E-08 55.4 3.3 21 34-54 2-22 (178)
310 2bdt_A BH3686; alpha-beta prot 96.9 0.00054 1.8E-08 55.5 3.3 22 33-54 3-24 (189)
311 1ly1_A Polynucleotide kinase; 96.9 0.00058 2E-08 54.5 3.3 22 33-54 3-24 (181)
312 2qt1_A Nicotinamide riboside k 96.9 0.001 3.5E-08 54.7 4.9 34 32-67 21-54 (207)
313 1znw_A Guanylate kinase, GMP k 96.8 0.00059 2E-08 56.3 3.3 23 33-55 21-43 (207)
314 1s96_A Guanylate kinase, GMP k 96.8 0.0006 2.1E-08 57.1 3.3 25 31-55 15-39 (219)
315 3asz_A Uridine kinase; cytidin 96.8 0.00065 2.2E-08 56.0 3.4 36 32-68 6-41 (211)
316 4gp7_A Metallophosphoesterase; 96.8 0.0006 2.1E-08 54.6 3.1 22 32-53 9-30 (171)
317 1nks_A Adenylate kinase; therm 96.8 0.00067 2.3E-08 54.7 3.4 32 33-64 2-35 (194)
318 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00062 2.1E-08 58.4 3.3 26 30-55 2-27 (260)
319 3c8u_A Fructokinase; YP_612366 96.8 0.00061 2.1E-08 56.3 3.0 37 31-67 21-59 (208)
320 2yvu_A Probable adenylyl-sulfa 96.8 0.00089 3E-08 54.0 3.9 36 30-65 11-48 (186)
321 4ehx_A Tetraacyldisaccharide 4 96.8 0.0087 3E-07 52.8 10.4 148 30-200 34-192 (315)
322 4eun_A Thermoresistant glucoki 96.8 0.00067 2.3E-08 55.6 3.1 23 32-54 29-51 (200)
323 1ihu_A Arsenical pump-driving 96.8 0.0085 2.9E-07 57.4 11.3 39 31-69 7-47 (589)
324 3b5x_A Lipid A export ATP-bind 96.8 0.00091 3.1E-08 64.2 4.4 45 11-55 341-392 (582)
325 2ehv_A Hypothetical protein PH 96.7 0.00078 2.7E-08 56.7 3.4 35 33-67 31-68 (251)
326 3kta_A Chromosome segregation 96.7 0.001 3.5E-08 53.4 3.9 42 12-54 7-48 (182)
327 3vaa_A Shikimate kinase, SK; s 96.7 0.00077 2.6E-08 55.2 3.1 25 31-55 24-48 (199)
328 1ex7_A Guanylate kinase; subst 96.7 0.00078 2.7E-08 54.9 3.0 22 35-56 4-25 (186)
329 3trf_A Shikimate kinase, SK; a 96.7 0.0008 2.7E-08 54.1 3.1 24 32-55 5-28 (185)
330 2j41_A Guanylate kinase; GMP, 96.7 0.00085 2.9E-08 54.8 3.3 23 33-55 7-29 (207)
331 2v54_A DTMP kinase, thymidylat 96.7 0.0014 4.8E-08 53.4 4.6 30 32-61 4-33 (204)
332 1cke_A CK, MSSA, protein (cyti 96.7 0.00081 2.8E-08 55.9 3.1 23 32-54 5-27 (227)
333 2bbw_A Adenylate kinase 4, AK4 96.7 0.00083 2.8E-08 56.9 3.2 24 31-54 26-49 (246)
334 3tqc_A Pantothenate kinase; bi 96.7 0.0013 4.3E-08 58.4 4.5 38 30-67 90-131 (321)
335 1qf9_A UMP/CMP kinase, protein 96.7 0.0011 3.9E-08 53.3 3.9 23 32-54 6-28 (194)
336 1knq_A Gluconate kinase; ALFA/ 96.7 0.0011 3.9E-08 52.8 3.8 23 32-54 8-30 (175)
337 3hr8_A Protein RECA; alpha and 96.7 0.0056 1.9E-07 55.0 8.6 88 34-134 63-153 (356)
338 3h2y_A GTPase family protein; 96.7 0.0017 5.8E-08 58.7 5.3 88 152-257 69-156 (368)
339 1z6g_A Guanylate kinase; struc 96.7 0.00074 2.5E-08 56.3 2.7 23 33-55 24-46 (218)
340 2c95_A Adenylate kinase 1; tra 96.7 0.00074 2.5E-08 54.7 2.6 25 31-55 8-32 (196)
341 3iij_A Coilin-interacting nucl 96.7 0.00084 2.9E-08 53.9 2.8 26 30-55 9-34 (180)
342 2plr_A DTMP kinase, probable t 96.7 0.0011 3.6E-08 54.4 3.5 24 32-55 4-27 (213)
343 2wwf_A Thymidilate kinase, put 96.6 0.0012 4.3E-08 54.1 3.9 26 30-55 8-33 (212)
344 1y63_A LMAJ004144AAA protein; 96.6 0.0011 3.7E-08 53.6 3.4 25 31-55 9-33 (184)
345 1via_A Shikimate kinase; struc 96.6 0.00081 2.8E-08 53.7 2.5 24 32-55 4-27 (175)
346 3cm0_A Adenylate kinase; ATP-b 96.6 0.0013 4.3E-08 52.9 3.7 23 32-54 4-26 (186)
347 3uie_A Adenylyl-sulfate kinase 96.6 0.0013 4.3E-08 53.9 3.7 26 29-54 22-47 (200)
348 2cdn_A Adenylate kinase; phosp 96.6 0.0012 4E-08 54.0 3.5 26 30-55 18-43 (201)
349 2zr9_A Protein RECA, recombina 96.6 0.0043 1.5E-07 55.6 7.5 87 34-133 63-152 (349)
350 1xp8_A RECA protein, recombina 96.6 0.0064 2.2E-07 54.8 8.6 88 34-133 76-165 (366)
351 2cvh_A DNA repair and recombin 96.6 0.0014 4.7E-08 54.0 4.0 35 33-68 21-55 (220)
352 1jjv_A Dephospho-COA kinase; P 96.6 0.0012 4.1E-08 54.1 3.5 22 33-54 3-24 (206)
353 1kht_A Adenylate kinase; phosp 96.6 0.0011 3.8E-08 53.3 3.1 23 33-55 4-26 (192)
354 1puj_A YLQF, conserved hypothe 96.6 0.0012 4.2E-08 57.4 3.5 83 147-257 18-102 (282)
355 1gvn_B Zeta; postsegregational 96.6 0.0019 6.4E-08 56.3 4.7 26 30-55 31-56 (287)
356 1nn5_A Similar to deoxythymidy 96.6 0.0012 4.2E-08 54.2 3.3 25 31-55 8-32 (215)
357 1tev_A UMP-CMP kinase; ploop, 96.6 0.0013 4.3E-08 53.1 3.3 24 32-55 3-26 (196)
358 3lnc_A Guanylate kinase, GMP k 96.5 0.00079 2.7E-08 56.4 2.0 23 33-55 28-51 (231)
359 1uf9_A TT1252 protein; P-loop, 96.5 0.0014 5E-08 53.2 3.6 26 30-55 6-31 (203)
360 2if2_A Dephospho-COA kinase; a 96.5 0.0013 4.3E-08 53.9 3.1 22 33-54 2-23 (204)
361 3umf_A Adenylate kinase; rossm 96.5 0.0015 5.3E-08 54.5 3.7 26 30-55 27-52 (217)
362 3ec1_A YQEH GTPase; atnos1, at 96.5 0.0013 4.3E-08 59.6 3.3 88 151-257 70-158 (369)
363 1xx6_A Thymidine kinase; NESG, 96.5 0.014 4.8E-07 47.6 9.4 38 32-69 8-47 (191)
364 2eyu_A Twitching motility prot 96.5 0.0012 4.3E-08 56.7 3.1 25 31-55 24-48 (261)
365 1u94_A RECA protein, recombina 96.5 0.0078 2.7E-07 54.1 8.4 88 34-134 65-155 (356)
366 1cr0_A DNA primase/helicase; R 96.5 0.0025 8.4E-08 55.5 5.0 36 34-69 37-75 (296)
367 3b60_A Lipid A export ATP-bind 96.5 0.0014 4.6E-08 63.0 3.4 45 11-55 341-392 (582)
368 1vht_A Dephospho-COA kinase; s 96.5 0.0016 5.5E-08 53.9 3.4 23 32-54 4-26 (218)
369 1rz3_A Hypothetical protein rb 96.5 0.0022 7.6E-08 52.5 4.2 37 31-67 21-59 (201)
370 4a74_A DNA repair and recombin 96.5 0.0016 5.5E-08 54.0 3.4 22 33-54 26-47 (231)
371 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0017 5.8E-08 53.8 3.5 37 33-69 24-62 (235)
372 2ze6_A Isopentenyl transferase 96.4 0.0016 5.5E-08 55.6 3.3 23 33-55 2-24 (253)
373 2bwj_A Adenylate kinase 5; pho 96.4 0.0015 5.2E-08 53.0 3.0 25 31-55 11-35 (199)
374 3fkq_A NTRC-like two-domain pr 96.4 0.038 1.3E-06 49.7 12.5 39 29-67 140-181 (373)
375 2f6r_A COA synthase, bifunctio 96.4 0.003 1E-07 54.8 5.0 25 30-54 73-97 (281)
376 2iyv_A Shikimate kinase, SK; t 96.4 0.0012 4.1E-08 53.1 2.2 22 33-54 3-24 (184)
377 2jeo_A Uridine-cytidine kinase 96.4 0.0017 5.8E-08 55.0 3.3 22 33-54 26-47 (245)
378 2jaq_A Deoxyguanosine kinase; 96.4 0.0017 5.7E-08 52.9 3.1 22 34-55 2-23 (205)
379 3qf4_B Uncharacterized ABC tra 96.4 0.0016 5.4E-08 62.7 3.4 45 11-55 354-404 (598)
380 2vli_A Antibiotic resistance p 96.4 0.001 3.6E-08 53.2 1.8 24 32-55 5-28 (183)
381 3b85_A Phosphate starvation-in 96.4 0.0013 4.6E-08 54.5 2.5 22 33-54 23-44 (208)
382 1sq5_A Pantothenate kinase; P- 96.4 0.0028 9.6E-08 55.7 4.7 37 31-67 79-119 (308)
383 2rcn_A Probable GTPase ENGC; Y 96.4 0.0017 5.9E-08 58.3 3.3 21 34-54 217-237 (358)
384 1gtv_A TMK, thymidylate kinase 96.4 0.0011 3.7E-08 54.6 1.8 22 34-55 2-23 (214)
385 1zd8_A GTP:AMP phosphotransfer 96.4 0.0019 6.6E-08 53.9 3.3 25 31-55 6-30 (227)
386 1aky_A Adenylate kinase; ATP:A 96.3 0.0019 6.4E-08 53.6 3.1 24 32-55 4-27 (220)
387 3nwj_A ATSK2; P loop, shikimat 96.3 0.00055 1.9E-08 58.5 -0.2 44 11-54 17-70 (250)
388 1e6c_A Shikimate kinase; phosp 96.3 0.0016 5.3E-08 51.7 2.4 22 33-54 3-24 (173)
389 3aez_A Pantothenate kinase; tr 96.3 0.0019 6.6E-08 57.0 3.3 38 31-68 89-130 (312)
390 2iw3_A Elongation factor 3A; a 96.3 0.0024 8.1E-08 64.5 4.2 45 10-54 434-483 (986)
391 2yv5_A YJEQ protein; hydrolase 96.3 0.002 6.7E-08 56.6 3.3 22 33-55 166-187 (302)
392 2pbr_A DTMP kinase, thymidylat 96.3 0.0021 7.1E-08 51.8 3.1 22 34-55 2-23 (195)
393 2i3b_A HCR-ntpase, human cance 96.3 0.0017 5.9E-08 53.0 2.6 21 34-54 3-23 (189)
394 1uj2_A Uridine-cytidine kinase 96.3 0.0022 7.5E-08 54.6 3.3 26 30-55 20-45 (252)
395 2z0h_A DTMP kinase, thymidylat 96.3 0.0021 7.3E-08 51.9 3.1 35 34-69 2-38 (197)
396 3tlx_A Adenylate kinase 2; str 96.3 0.0025 8.5E-08 54.0 3.6 24 31-54 28-51 (243)
397 1zak_A Adenylate kinase; ATP:A 96.3 0.0018 6E-08 53.9 2.6 24 32-55 5-28 (222)
398 3qf4_A ABC transporter, ATP-bi 96.3 0.0014 4.8E-08 63.0 2.2 45 11-55 341-392 (587)
399 2dr3_A UPF0273 protein PH0284; 96.3 0.0034 1.2E-07 52.6 4.4 36 34-69 25-62 (247)
400 1p9r_A General secretion pathw 96.3 0.0039 1.3E-07 57.3 5.1 36 30-65 165-202 (418)
401 1odf_A YGR205W, hypothetical 3 96.2 0.0028 9.5E-08 55.4 3.7 26 30-55 29-54 (290)
402 2r8r_A Sensor protein; KDPD, P 96.2 0.0092 3.2E-07 50.0 6.7 36 35-70 9-46 (228)
403 1a7j_A Phosphoribulokinase; tr 96.2 0.0011 3.9E-08 57.8 1.2 37 31-67 4-42 (290)
404 3pg5_A Uncharacterized protein 96.2 0.0096 3.3E-07 53.5 7.4 38 33-70 2-42 (361)
405 2v9p_A Replication protein E1; 96.2 0.0022 7.7E-08 56.3 3.1 43 12-55 102-149 (305)
406 4e22_A Cytidylate kinase; P-lo 96.2 0.0027 9.3E-08 54.1 3.5 24 31-54 26-49 (252)
407 2kjq_A DNAA-related protein; s 96.2 0.003 1E-07 49.3 3.5 25 31-55 35-59 (149)
408 3jvv_A Twitching mobility prot 96.2 0.0026 8.9E-08 57.2 3.5 24 32-55 123-146 (356)
409 3exa_A TRNA delta(2)-isopenten 96.2 0.0043 1.5E-07 54.6 4.7 34 31-67 2-35 (322)
410 3ec2_A DNA replication protein 96.2 0.0022 7.4E-08 51.4 2.6 24 32-55 38-61 (180)
411 2yl4_A ATP-binding cassette SU 96.2 0.0016 5.3E-08 62.7 2.0 44 12-55 342-393 (595)
412 1t9h_A YLOQ, probable GTPase E 96.2 0.001 3.6E-08 58.5 0.7 22 33-54 174-195 (307)
413 3fb4_A Adenylate kinase; psych 96.2 0.0026 9E-08 52.4 3.1 21 34-54 2-22 (216)
414 2p5t_B PEZT; postsegregational 96.2 0.0025 8.7E-08 54.2 3.1 26 30-55 30-55 (253)
415 2pez_A Bifunctional 3'-phospho 96.2 0.0027 9.3E-08 50.8 3.1 23 32-54 5-27 (179)
416 3cnl_A YLQF, putative uncharac 96.2 0.0024 8.3E-08 54.9 2.9 82 147-257 16-97 (262)
417 2oap_1 GSPE-2, type II secreti 96.2 0.0048 1.6E-07 58.2 5.1 32 34-65 262-294 (511)
418 3zvl_A Bifunctional polynucleo 96.1 0.0034 1.1E-07 57.7 4.0 29 27-55 253-281 (416)
419 3bk7_A ABC transporter ATP-bin 96.1 0.0026 9E-08 61.2 3.4 40 15-54 95-139 (607)
420 4a82_A Cystic fibrosis transme 96.1 0.0019 6.5E-08 61.9 2.4 45 11-55 339-390 (578)
421 1zuh_A Shikimate kinase; alpha 96.1 0.0029 9.9E-08 50.0 3.0 23 32-54 7-29 (168)
422 3zq6_A Putative arsenical pump 96.1 0.013 4.6E-07 51.7 7.6 38 32-69 14-53 (324)
423 2pt5_A Shikimate kinase, SK; a 96.1 0.0031 1.1E-07 49.7 3.0 21 34-54 2-22 (168)
424 2gza_A Type IV secretion syste 96.1 0.0047 1.6E-07 55.6 4.5 22 34-55 177-198 (361)
425 1cip_A Protein (guanine nucleo 96.1 0.0058 2E-07 54.8 5.1 121 121-257 193-340 (353)
426 3dl0_A Adenylate kinase; phosp 96.1 0.0032 1.1E-07 51.9 3.1 21 35-55 3-23 (216)
427 3ug7_A Arsenical pump-driving 96.1 0.025 8.4E-07 50.6 9.2 40 31-70 25-66 (349)
428 2orw_A Thymidine kinase; TMTK, 96.1 0.0049 1.7E-07 49.9 4.2 37 33-69 4-42 (184)
429 1u0l_A Probable GTPase ENGC; p 96.1 0.0028 9.4E-08 55.6 2.8 22 33-54 170-191 (301)
430 3e2i_A Thymidine kinase; Zn-bi 96.1 0.035 1.2E-06 46.1 9.3 38 32-69 28-67 (219)
431 3be4_A Adenylate kinase; malar 96.0 0.0035 1.2E-07 52.0 3.2 24 32-55 5-28 (217)
432 2ewv_A Twitching motility prot 96.0 0.0032 1.1E-07 56.9 3.1 24 32-55 136-159 (372)
433 3a8t_A Adenylate isopentenyltr 96.0 0.0073 2.5E-07 53.7 5.2 33 32-67 40-72 (339)
434 2pt7_A CAG-ALFA; ATPase, prote 96.0 0.0053 1.8E-07 54.6 4.4 22 34-55 173-194 (330)
435 3ake_A Cytidylate kinase; CMP 96.0 0.0035 1.2E-07 51.1 3.0 22 33-54 3-24 (208)
436 3d3q_A TRNA delta(2)-isopenten 96.0 0.0048 1.6E-07 55.0 4.0 32 33-67 8-39 (340)
437 1m7g_A Adenylylsulfate kinase; 96.0 0.0043 1.5E-07 51.1 3.5 26 30-55 23-48 (211)
438 1f2t_A RAD50 ABC-ATPase; DNA d 96.0 0.0046 1.6E-07 48.3 3.5 40 11-53 5-44 (149)
439 2bbs_A Cystic fibrosis transme 96.0 0.0035 1.2E-07 54.7 3.0 43 11-55 40-87 (290)
440 1ak2_A Adenylate kinase isoenz 95.9 0.004 1.4E-07 52.2 3.2 25 31-55 15-39 (233)
441 1n0w_A DNA repair protein RAD5 95.9 0.0086 2.9E-07 50.0 5.3 35 34-68 26-68 (243)
442 2iw3_A Elongation factor 3A; a 95.9 0.0025 8.4E-08 64.4 2.2 45 11-55 671-722 (986)
443 1zcb_A G alpha I/13; GTP-bindi 95.9 0.0059 2E-07 55.0 4.4 122 120-257 200-349 (362)
444 2grj_A Dephospho-COA kinase; T 95.9 0.0043 1.5E-07 50.7 3.1 24 31-54 11-34 (192)
445 4edh_A DTMP kinase, thymidylat 95.9 0.0081 2.8E-07 49.9 4.8 39 31-70 5-45 (213)
446 4eaq_A DTMP kinase, thymidylat 95.9 0.0059 2E-07 51.2 4.0 38 31-69 25-63 (229)
447 3sr0_A Adenylate kinase; phosp 95.9 0.0045 1.5E-07 51.2 3.1 22 34-55 2-23 (206)
448 2xb4_A Adenylate kinase; ATP-b 95.9 0.0044 1.5E-07 51.6 3.1 22 34-55 2-23 (223)
449 1w1w_A Structural maintenance 95.9 0.0051 1.7E-07 56.6 3.8 43 11-54 6-48 (430)
450 3l82_B F-box only protein 4; T 95.9 0.011 3.8E-07 49.0 5.5 92 151-258 124-220 (227)
451 4f4c_A Multidrug resistance pr 95.9 0.0033 1.1E-07 66.0 2.7 45 11-55 1076-1128(1321)
452 3fwy_A Light-independent proto 95.8 0.023 7.8E-07 50.1 7.8 40 31-70 47-88 (314)
453 1ltq_A Polynucleotide kinase; 95.8 0.0049 1.7E-07 53.6 3.3 22 33-54 3-24 (301)
454 1e4v_A Adenylate kinase; trans 95.8 0.0045 1.6E-07 51.1 3.0 21 34-54 2-22 (214)
455 1p5z_B DCK, deoxycytidine kina 95.8 0.0029 1E-07 54.1 1.9 28 29-56 21-48 (263)
456 3foz_A TRNA delta(2)-isopenten 95.8 0.0079 2.7E-07 52.8 4.5 33 32-67 10-42 (316)
457 3ozx_A RNAse L inhibitor; ATP 95.8 0.0031 1.1E-07 59.9 2.0 37 17-54 5-47 (538)
458 3r20_A Cytidylate kinase; stru 95.7 0.0054 1.8E-07 51.8 3.2 24 31-54 8-31 (233)
459 2orv_A Thymidine kinase; TP4A 95.7 0.038 1.3E-06 46.4 8.3 39 32-70 19-59 (234)
460 2obl_A ESCN; ATPase, hydrolase 95.7 0.0019 6.4E-08 58.0 0.3 44 11-55 45-94 (347)
461 3lv8_A DTMP kinase, thymidylat 95.7 0.0067 2.3E-07 51.3 3.6 39 32-70 27-67 (236)
462 3bh0_A DNAB-like replicative h 95.7 0.012 4E-07 51.9 5.2 37 34-70 70-108 (315)
463 3ez2_A Plasmid partition prote 95.6 0.047 1.6E-06 49.5 9.3 40 31-70 107-155 (398)
464 2w58_A DNAI, primosome compone 95.6 0.01 3.5E-07 48.2 4.5 32 33-64 55-88 (202)
465 3crm_A TRNA delta(2)-isopenten 95.6 0.0089 3E-07 52.9 4.2 32 33-67 6-37 (323)
466 1t9h_A YLOQ, probable GTPase E 95.6 0.0057 1.9E-07 53.8 3.0 51 149-202 83-133 (307)
467 3qf7_A RAD50; ABC-ATPase, ATPa 95.6 0.0068 2.3E-07 54.6 3.5 22 32-53 23-44 (365)
468 2vp4_A Deoxynucleoside kinase; 95.6 0.0065 2.2E-07 50.8 3.1 24 32-55 20-43 (230)
469 3ez9_A Para; DNA binding, wing 95.6 0.02 6.8E-07 52.1 6.6 40 31-70 110-158 (403)
470 3bos_A Putative DNA replicatio 95.6 0.0083 2.8E-07 49.7 3.7 35 31-65 51-87 (242)
471 3ld9_A DTMP kinase, thymidylat 95.6 0.0058 2E-07 51.2 2.7 41 30-70 19-62 (223)
472 2x8a_A Nuclear valosin-contain 95.5 0.0065 2.2E-07 52.4 3.0 21 35-55 47-67 (274)
473 1in4_A RUVB, holliday junction 95.5 0.0061 2.1E-07 54.1 2.8 24 32-55 51-74 (334)
474 1jbk_A CLPB protein; beta barr 95.5 0.0074 2.5E-07 47.9 3.1 24 32-55 43-66 (195)
475 4f4c_A Multidrug resistance pr 95.5 0.0063 2.2E-07 63.8 3.3 45 11-55 415-467 (1321)
476 4a1f_A DNAB helicase, replicat 95.5 0.012 4.1E-07 52.4 4.6 38 33-70 47-86 (338)
477 3bk7_A ABC transporter ATP-bin 95.5 0.0075 2.5E-07 58.1 3.4 46 9-55 355-405 (607)
478 1e69_A Chromosome segregation 95.5 0.0078 2.7E-07 53.1 3.3 41 11-53 5-45 (322)
479 1yqt_A RNAse L inhibitor; ATP- 95.4 0.0073 2.5E-07 57.3 3.2 46 9-55 285-335 (538)
480 3h4m_A Proteasome-activating n 95.4 0.032 1.1E-06 47.8 7.0 24 33-56 52-75 (285)
481 1nlf_A Regulatory protein REPA 95.4 0.0089 3.1E-07 51.5 3.4 21 34-54 32-52 (279)
482 1ixz_A ATP-dependent metallopr 95.4 0.008 2.7E-07 50.8 3.0 21 35-55 52-72 (254)
483 4tmk_A Protein (thymidylate ki 95.4 0.011 3.6E-07 49.2 3.6 38 33-70 4-43 (213)
484 2qmh_A HPR kinase/phosphorylas 95.4 0.017 5.9E-07 47.4 4.7 31 33-67 35-65 (205)
485 3io5_A Recombination and repai 95.3 0.025 8.6E-07 49.9 6.1 87 33-131 29-122 (333)
486 1lw7_A Transcriptional regulat 95.3 0.0081 2.8E-07 54.0 2.9 24 32-55 170-193 (365)
487 3qks_A DNA double-strand break 95.3 0.01 3.5E-07 48.8 3.3 40 11-53 5-44 (203)
488 3g5u_A MCG1178, multidrug resi 95.3 0.0069 2.4E-07 63.3 2.7 45 11-55 387-439 (1284)
489 2axn_A 6-phosphofructo-2-kinas 95.3 0.017 5.8E-07 54.6 5.2 38 29-66 32-71 (520)
490 3pfi_A Holliday junction ATP-d 95.3 0.035 1.2E-06 48.8 6.9 25 32-56 55-79 (338)
491 3g5u_A MCG1178, multidrug resi 95.3 0.014 4.7E-07 61.1 4.8 45 11-55 1030-1082(1284)
492 2zts_A Putative uncharacterize 95.3 0.012 4E-07 49.2 3.6 37 34-70 32-71 (251)
493 2npi_A Protein CLP1; CLP1-PCF1 95.2 0.008 2.7E-07 55.9 2.7 43 12-55 119-161 (460)
494 2dpy_A FLII, flagellum-specifi 95.2 0.0028 9.7E-08 58.6 -0.4 46 10-55 130-180 (438)
495 2ocp_A DGK, deoxyguanosine kin 95.2 0.012 4.1E-07 49.5 3.4 36 32-70 2-37 (241)
496 1tue_A Replication protein E1; 95.2 0.0076 2.6E-07 49.8 2.1 22 34-55 60-81 (212)
497 3ozx_A RNAse L inhibitor; ATP 95.1 0.01 3.5E-07 56.3 3.2 45 10-54 268-316 (538)
498 1sxj_E Activator 1 40 kDa subu 95.1 0.0084 2.9E-07 53.2 2.4 26 29-54 33-58 (354)
499 1q3t_A Cytidylate kinase; nucl 95.1 0.013 4.3E-07 49.2 3.3 23 32-54 16-38 (236)
500 2r6a_A DNAB helicase, replicat 95.1 0.016 5.3E-07 53.8 4.2 37 34-70 205-244 (454)
No 1
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=100.00 E-value=4.6e-32 Score=243.65 Aligned_cols=240 Identities=30% Similarity=0.517 Sum_probs=187.7
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.++|+++|+|++|||||||+|.|+....+.++||+.|++|+ +.+|...+.... ..+++++|||+||+.+.++..
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~-i~idg~~l~~~~-----~~~~el~~gCicc~~~~~~~~ 75 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDRA-----TQIKTLTNGCICCSRSNELED 75 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCS-CCEEEEEECTTS-----CEEEEETTSCEEECTTSCHHH
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcc-cCccHHHHhCCC-----CCEEEECCCceEEcccHHHHH
Confidence 57999999999999999999999987778999999999998 899887765421 357889999999999999999
Q ss_pred HHHHHH--hhcC--CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736 110 ALEQLV--QRKE--RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (293)
Q Consensus 110 ~l~~l~--~~~~--~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi 185 (293)
.+..++ .... .++++++|+.|+++|.++...++..........++.++.++|+..+...... .....+|+
T Consensus 76 ~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~------ls~g~~Q~ 149 (318)
T 1nij_A 76 ALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQV 149 (318)
T ss_dssp HHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHH------CHHHHHHH
T ss_pred HHHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhh------chHHHHHH
Confidence 988885 2223 3599999999999998876655333334455678889999999887766542 34566899
Q ss_pred hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCCC
Q 022736 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQN 265 (293)
Q Consensus 186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~~ 265 (293)
..++++++||.|++++. .++.+.++.+||.+.++...++..+...++.+..++...... .......+++
T Consensus 150 ~~ad~ill~k~dl~de~------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~ 218 (318)
T 1nij_A 150 GYADRILLTKTDVAGEA------EKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVV-----STKPRFHFIA 218 (318)
T ss_dssp HTCSEEEEECTTTCSCT------HHHHHHHHHHCSSSCEEECCSSCCCGGGGSCCCTTSCCSCCC-----SSCCCSCSTG
T ss_pred HhCCEEEEECcccCCHH------HHHHHHHHHhCCCCeEEEecccCCCHHHHhCCCCCChhhhhc-----ccCccccccc
Confidence 99999999999999542 688888999999999999999888888888766544322110 0000111233
Q ss_pred CCCCCEEEEEEecCCCCCHHHHHHhhh
Q 022736 266 LHDNNVRTLSICEPLAVNLDKVILQIA 292 (293)
Q Consensus 266 ~~~~~~~~~~~~~~~p~~~~~~~~~l~ 292 (293)
.|++++++++++.++|+++++|.+||+
T Consensus 219 ~~~~~v~s~~~~~~~~~~~~~l~~~l~ 245 (318)
T 1nij_A 219 DKQNDISSIVVELDYPVDISEVSRVME 245 (318)
T ss_dssp GGGCSEEEEEEEESSCBCHHHHHHHHH
T ss_pred CCCCCeEEEEEEeCCCCCHHHHHHHHH
Confidence 456789999999999999999999985
No 2
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.79 E-value=1.6e-19 Score=152.90 Aligned_cols=182 Identities=16% Similarity=0.240 Sum_probs=125.9
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
.++++++++|++|||||||+++|+.. ....+++++.++++. ..|...+... + ...+.+..||+||.....+.
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~--~~d~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~ 100 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS--KADYERVRRF--G---IKAEAISTGKECHLDAHMIY 100 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC--HHHHHHHHTT--T---CEEEECCCTTCSSCCHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC--chhHHHHHhC--C---CcEEEecCCceeecccHHHH
Confidence 46899999999999999999999975 333689999999985 3454444321 1 12456788999876554444
Q ss_pred HHHHHHHhhcCCCCEEEEecCCC-CCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 109 QALEQLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~-~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
+.+. ...++++++|||+|. ..|..+ ....+.+++|+|+..+..... ....+...
T Consensus 101 ~~~~----~~~~~d~iiidt~G~~~~~~~~------------~~~~~~~i~vvd~~~~~~~~~---------~~~~~~~~ 155 (221)
T 2wsm_A 101 HRLK----KFSDCDLLLIENVGNLICPVDF------------DLGENYRVVMVSVTEGDDVVE---------KHPEIFRV 155 (221)
T ss_dssp TTGG----GGTTCSEEEEEEEEBSSGGGGC------------CCSCSEEEEEEEGGGCTTHHH---------HCHHHHHT
T ss_pred HHHH----hcCCCCEEEEeCCCCCCCCchh------------ccccCcEEEEEeCCCcchhhh---------hhhhhhhc
Confidence 4333 245789999999995 323210 012356899999976532211 11234578
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|.++|+||+|+.+..+ ....++.+.++.+++.+ .++.+|+++|+|++++.+++.+.
T Consensus 156 ~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~-------------~i~~~Sa~~g~gi~~l~~~l~~~ 211 (221)
T 2wsm_A 156 ADLIVINKVALAEAVG--ADVEKMKADAKLINPRA-------------KIIEMDLKTGKGFEEWIDFLRGI 211 (221)
T ss_dssp CSEEEEECGGGHHHHT--CCHHHHHHHHHHHCTTS-------------EEEECBTTTTBTHHHHHHHHHHH
T ss_pred CCEEEEecccCCcchh--hHHHHHHHHHHHhCCCC-------------eEEEeecCCCCCHHHHHHHHHHH
Confidence 9999999999875311 13577777787776543 45789999999999999998754
No 3
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=161.66 Aligned_cols=198 Identities=15% Similarity=0.103 Sum_probs=106.7
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCC----CCc-chhhhhhccCcceeec
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE----GGA-LVEEWVELANGCICCT 102 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~----~~~-~~~~~~~l~~gcicc~ 102 (293)
...++++|+|++|||||||+|+|+.. ..+.+++|+..|+++ ...++.++.+.. .+. ...-+...+.+|.||.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~-~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg 150 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS-CTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGG 150 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------CCSTTCTTEEEECC--------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC-CCcCcchhchHHHHHHhcCCCCEEEEecCCcccccc
Confidence 34899999999999999999999864 346899999999986 444443333210 000 0001223467888875
Q ss_pred cchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736 103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (293)
Q Consensus 103 ~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (293)
...+..+.+..+- ..+++++|+||+|+..+.... ...+|.+++|+|+........ ...
T Consensus 151 ~tr~~~~~~~~~~--~~~~~~iliDT~Gi~~~~~~l-----------~~~~d~vl~V~d~~~~~~~~~-------i~~-- 208 (349)
T 2www_A 151 VTRTTNEAILLCE--GAGYDIILIETVGVGQSEFAV-----------ADMVDMFVLLLPPAGGDELQG-------IKR-- 208 (349)
T ss_dssp -CTTHHHHHHHHH--HTTCSEEEEECCCC--CHHHH-----------HTTCSEEEEEECCC-------------------
T ss_pred chHHHHHHHHhhc--cCCCCEEEEECCCcchhhhhH-----------HhhCCEEEEEEcCCcchhHHH-------hHH--
Confidence 5455555554322 367899999999987553111 136788999999975421100 000
Q ss_pred HHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 183 HQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 183 ~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
..++.++++|+||+|+.+..........+...++.++|.+.. ...+++.+|+++|+|+++|.+++.+.
T Consensus 209 ~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~--------~~~~vi~iSA~~g~Gi~~L~~~I~~~ 276 (349)
T 2www_A 209 GIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQV--------WKPKVIRISARSGEGISEMWDKMKDF 276 (349)
T ss_dssp --CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-------------CCCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccC--------CCceEEEEecCCCCCHHHHHHHHHHH
Confidence 123568999999999975321001123333344433442211 01356789999999999999998754
No 4
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.76 E-value=7.4e-19 Score=159.87 Aligned_cols=195 Identities=20% Similarity=0.181 Sum_probs=121.0
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhc--------CCCCcchhhhhhccCcce
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE--------GEGGALVEEWVELANGCI 99 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~--------~~~~~~~~~~~~l~~gci 99 (293)
.+.++|+|+|++|+|||||+++|... ..|++++++..|++.+ ......+.+ ...+ ..+...+.+|.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~-~~~g~~l~d~~~~~~~~~~~~---~~i~~~~~~~~ 152 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST-RTGGSILGDKTRMARLAVHPN---AYIRPSPTSGT 152 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----------------CHHHHTCTT---EEEECCC--CC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC-cccchhccchhhHHhhccCCC---eeEEECCCCcc
Confidence 46789999999999999999999864 5689999999999862 222211111 0011 12345677888
Q ss_pred eeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCch
Q 022736 100 CCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (293)
Q Consensus 100 cc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (293)
||.......+.+. .+. ..+++++||||||+....... ...+|.+++|+|+....... . +.
T Consensus 153 ~~~~~~~t~d~i~-~~~-~~~~~~iiiDTpGi~~~~~~~-----------~~~aD~vl~V~d~~~~~~~~----~---l~ 212 (355)
T 3p32_A 153 LGGVTRATRETVV-LLE-AAGFDVILIETVGVGQSEVAV-----------ANMVDTFVLLTLARTGDQLQ----G---IK 212 (355)
T ss_dssp HHHHHHHHHHHHH-HHH-HTTCCEEEEEECSCSSHHHHH-----------HTTCSEEEEEEESSTTCTTT----T---CC
T ss_pred ccchhHHHHHHHH-HHh-hCCCCEEEEeCCCCCcHHHHH-----------HHhCCEEEEEECCCCCccHH----H---HH
Confidence 8877766666663 222 367999999999987643221 15678999999986532210 0 11
Q ss_pred HHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 180 ~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
....+.|+++|+||+|+.+.........++.+.++..+|... + -..+++.+||++|+|++++.+++.+.
T Consensus 213 --~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~------~--~~~~vi~iSA~~g~Gi~~L~~~i~~~ 281 (355)
T 3p32_A 213 --KGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREA------L--WRPPVLTMSAVEGRGLAELWDTVERH 281 (355)
T ss_dssp --TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCC------S--CCCCEEEEBGGGTBSHHHHHHHHHHH
T ss_pred --HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhcccccc------C--CCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 112356999999999997543211223344455554543210 0 01357899999999999999888654
No 5
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.76 E-value=1.2e-18 Score=154.88 Aligned_cols=164 Identities=23% Similarity=0.251 Sum_probs=109.2
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+.+.++|+|.+|+|||||+|+|+ +.++++++..++++. ..+.. .
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~----g~~~~ivs~~~~tTr----~~i~~---------i------------------ 49 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLL----GVKVAPISPRPQTTR----KRLRG---------I------------------ 49 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH----TSCCSCCCSSSCCCC----SCEEE---------E------------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHh----CCceeeecCCCCcee----EEEEE---------E------------------
Confidence 567889999999999999999999 666666666666522 11110 0
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hc
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AF 187 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~ 187 (293)
....+.+++|+||||+.++.......+..........+|++++|+|+++.....+.. +...+.+. ..
T Consensus 50 ------~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~-----i~~~l~~~~~~~ 118 (301)
T 1wf3_A 50 ------LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDEL-----VARALKPLVGKV 118 (301)
T ss_dssp ------EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHH-----HHHHHGGGTTTS
T ss_pred ------EEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHH-----HHHHHHhhcCCC
Confidence 002345789999999988755444333333344556799999999997643322211 12233333 56
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|.++|+||+|+.+.. . .+...++.+. ++..++++||++|.|++++.+++.+.
T Consensus 119 p~ilV~NK~Dl~~~~----~--~~~~~~~~~~-------------~~~~~~~iSA~~g~gv~~l~~~l~~~ 170 (301)
T 1wf3_A 119 PILLVGNKLDAAKYP----E--EAMKAYHELL-------------PEAEPRMLSALDERQVAELKADLLAL 170 (301)
T ss_dssp CEEEEEECGGGCSSH----H--HHHHHHHHTS-------------TTSEEEECCTTCHHHHHHHHHHHHTT
T ss_pred CEEEEEECcccCCch----H--HHHHHHHHhc-------------CcCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 889999999998643 1 1344444431 23457899999999999999988653
No 6
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.75 E-value=2.6e-18 Score=153.37 Aligned_cols=169 Identities=24% Similarity=0.325 Sum_probs=110.5
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
..+.+.|+++|.+|||||||+|+|+ +.++++++..++++...-.....
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~----g~~~~i~s~~~~tT~~~~~~~~~---------------------------- 54 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLL----GTKVSIISPKAGTTRMRVLGVKN---------------------------- 54 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHH----TSCCSCCCSSSCCCCSCEEEEEE----------------------------
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHh----CCCccccCCCCCceeeEEEEEEe----------------------------
Confidence 4467899999999999999999999 77777777777763211110000
Q ss_pred HHHHHHHhhcC-CCCEEEEecCCCCCcH--HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736 109 QALEQLVQRKE-RLDHILLETTGLANPA--PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (293)
Q Consensus 109 ~~l~~l~~~~~-~~d~iiidt~G~~~~~--~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi 185 (293)
.. +.+++|+||||+.++. ......+..........+|++++|+|+.......+.. .+...+.+.
T Consensus 55 ---------~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~----~~~~~l~~~ 121 (308)
T 3iev_A 55 ---------IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEE----IYQNFIKPL 121 (308)
T ss_dssp ---------ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHH----HHHHHTGGG
T ss_pred ---------cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHH----HHHHHHHhc
Confidence 12 5678999999998765 2222222223334446789999999998643322211 012333444
Q ss_pred hccCEEEEeCCCCC-CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 186 AFADVVILNKVDLV-SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 186 ~~a~iivlNK~D~~-~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
..|.++|+||+|+. +.. ........+..... .+..++++||++|.|++++.+++.+.
T Consensus 122 ~~pvilV~NK~Dl~~~~~----~~~~~~~~l~~~~~------------~~~~i~~vSA~~g~gv~~L~~~l~~~ 179 (308)
T 3iev_A 122 NKPVIVVINKIDKIGPAK----NVLPLIDEIHKKHP------------ELTEIVPISALKGANLDELVKTILKY 179 (308)
T ss_dssp CCCEEEEEECGGGSSSGG----GGHHHHHHHHHHCT------------TCCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCEEEEEECccCCCCHH----HHHHHHHHHHHhcc------------CCCeEEEEeCCCCCCHHHHHHHHHHh
Confidence 67899999999998 433 23444444444331 12467899999999999999888654
No 7
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.75 E-value=9.5e-18 Score=151.74 Aligned_cols=198 Identities=17% Similarity=0.150 Sum_probs=116.9
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchh
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS 106 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (293)
..+.++++++|++|+|||||+|.|+.. ..+.+++++..|+++ ...+..++.+. ...+.....+++|+||.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~-~~~~~~il~d~---~~~~~~~~~~~~~i~~~~~~~ 128 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS-PVTGGSILGDK---TRMNDLARAEAAFIRPVPSSG 128 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-------------------CTTTTCTTEEEEEECC--
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc-CCCCcceeccc---chHHhhccCCCceeecCcccc
Confidence 356789999999999999999999763 347899999999986 33333333221 111223344789999864322
Q ss_pred -----HHHHHHHHHh-hcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH
Q 022736 107 -----LVQALEQLVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (293)
Q Consensus 107 -----l~~~l~~l~~-~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (293)
....+..+.. ...+++++||||||+.++.... ...+|.+++|+|+..... . .. ...
T Consensus 129 ~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~-----------~~~aD~vl~Vvd~~~~~~-~---~~---l~~ 190 (341)
T 2p67_A 129 HLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEV-----------ARMVDCFISLQIAGGGDD-L---QG---IKK 190 (341)
T ss_dssp ---CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHH-----------HTTCSEEEEEECC----------CC---CCH
T ss_pred ccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHHH-----------HHhCCEEEEEEeCCccHH-H---HH---HHH
Confidence 1222222221 1467899999999988754321 156889999999975422 1 11 111
Q ss_pred HHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 181 ~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.+...+.++|+||+|+.+..........++..++.+++... . -...++++||++|+|++++.+++.+.
T Consensus 191 --~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~------~--~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 191 --GLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYD------E--WQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp --HHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBT------T--BCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred --hhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhcccccc------C--CCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 23467899999999997642110111234444433343110 0 01357899999999999999998764
No 8
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.74 E-value=2.1e-18 Score=145.86 Aligned_cols=187 Identities=19% Similarity=0.167 Sum_probs=109.6
Q ss_pred cccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcce
Q 022736 20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI 99 (293)
Q Consensus 20 ~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gci 99 (293)
+..........+.+.|+|+|.+|+|||||+|+|+... +++.+...+|.+.......+.
T Consensus 17 ~~~~~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~---~~~~~~~~~~~t~~~~~~~~~------------------- 74 (223)
T 4dhe_A 17 TVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQK---RLAFASKTPGRTQHINYFSVG------------------- 74 (223)
T ss_dssp EECSGGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCS---SSSCTTCCCCSCCCEEEEEES-------------------
T ss_pred cccchhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCC---cceeecCCCCcccceEEEEec-------------------
Confidence 4444445555667889999999999999999999531 123333344431111100000
Q ss_pred eeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCc------HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhc
Q 022736 100 CCTVKHSLVQALEQLVQRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYR 173 (293)
Q Consensus 100 cc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~------~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~ 173 (293)
...+..+.|+||||+.++ ......+ ...++.....+|.+++|+|+..........
T Consensus 75 -----------------~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~- 135 (223)
T 4dhe_A 75 -----------------PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL-LSSYLQTRPQLCGMILMMDARRPLTELDRR- 135 (223)
T ss_dssp -----------------CTTSCSEEEEECCCCCSSCCCSTHHHHHHHH-HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-
T ss_pred -----------------CCCCCcEEEEcCCCCCcccCChhhHHHHHHH-HHHHHhcCcCcCEEEEEEeCCCCCCHHHHH-
Confidence 023467899999997664 1222111 123344445578899999997643322211
Q ss_pred ccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhh
Q 022736 174 HLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG 253 (293)
Q Consensus 174 ~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~ 253 (293)
+...+.+...+.++|+||+|+.+..+.......+.+.+....+. +......++.+||++|+|++++.+
T Consensus 136 ----~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~SA~~g~gv~~l~~ 203 (223)
T 4dhe_A 136 ----MIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA--------GYAGKLTVQLFSALKRTGLDDAHA 203 (223)
T ss_dssp ----HHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH--------TCCSCEEEEEEBTTTTBSHHHHHH
T ss_pred ----HHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc--------ccCCCCeEEEeecCCCcCHHHHHH
Confidence 23344445678999999999987543212233444444443100 000124578899999999999999
Q ss_pred hhhhhc
Q 022736 254 LLEEHQ 259 (293)
Q Consensus 254 ~l~~~~ 259 (293)
++.+..
T Consensus 204 ~l~~~~ 209 (223)
T 4dhe_A 204 LIESWL 209 (223)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 987643
No 9
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.73 E-value=6.8e-18 Score=139.21 Aligned_cols=176 Identities=16% Similarity=0.169 Sum_probs=105.0
Q ss_pred ccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcc
Q 022736 19 HEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGC 98 (293)
Q Consensus 19 ~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gc 98 (293)
.+............+-++++|.+|+|||||+|+|+.. +.......+|.+.... ..
T Consensus 10 ~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~----~~~~~~~~~~~t~~~~----~~----------------- 64 (195)
T 3pqc_A 10 KVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR----KIAFVSKTPGKTRSIN----FY----------------- 64 (195)
T ss_dssp EEECSTTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS----CCSCCCSSCCCCCCEE----EE-----------------
T ss_pred HHhcChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcC----ccccccCCCCCccCeE----EE-----------------
Confidence 3444444555566778999999999999999999943 3222233333211100 00
Q ss_pred eeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCc------HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhh
Q 022736 99 ICCTVKHSLVQALEQLVQRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKY 172 (293)
Q Consensus 99 icc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~------~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~ 172 (293)
..+.++.++||||+... ......+ ...++.....++.+++|+|+..........
T Consensus 65 -------------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~ 124 (195)
T 3pqc_A 65 -------------------LVNSKYYFVDLPGYGYAKVSKKERMLWKRL-VEDYFKNRWSLQMVFLLVDGRIPPQDSDLM 124 (195)
T ss_dssp -------------------EETTTEEEEECCCBSSSCCCHHHHHHHHHH-HHHHHHHCTTEEEEEEEEETTSCCCHHHHH
T ss_pred -------------------EECCcEEEEECCCCccccCChhhHHHHHHH-HHHHHhcCcCceEEEEEecCCCCCCHHHHH
Confidence 12345889999996432 1111111 123344445678999999987543222111
Q ss_pred cccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhh
Q 022736 173 RHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLE 252 (293)
Q Consensus 173 ~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~ 252 (293)
...++.....+.++|+||+|+.+..++ ....+.++..... .....++.+||++|+|++++.
T Consensus 125 -----~~~~~~~~~~p~i~v~nK~Dl~~~~~~----~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~l~ 185 (195)
T 3pqc_A 125 -----MVEWMKSLNIPFTIVLTKMDKVKMSER----AKKLEEHRKVFSK----------YGEYTIIPTSSVTGEGISELL 185 (195)
T ss_dssp -----HHHHHHHTTCCEEEEEECGGGSCGGGH----HHHHHHHHHHHHS----------SCCSCEEECCTTTCTTHHHHH
T ss_pred -----HHHHHHHcCCCEEEEEEChhcCChHHH----HHHHHHHHHHHhh----------cCCCceEEEecCCCCCHHHHH
Confidence 233455557899999999999876532 3333333332211 011357889999999999999
Q ss_pred hhhhhh
Q 022736 253 GLLEEH 258 (293)
Q Consensus 253 ~~l~~~ 258 (293)
+++.+.
T Consensus 186 ~~l~~~ 191 (195)
T 3pqc_A 186 DLISTL 191 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
No 10
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.72 E-value=2.6e-17 Score=142.88 Aligned_cols=219 Identities=20% Similarity=0.134 Sum_probs=118.4
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhh---hccCcceeecc-
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWV---ELANGCICCTV- 103 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~---~l~~gcicc~~- 103 (293)
..+.++++++|++|+||||+++.|... ..|++++++..|++. ...+...-.+..+....++.+ ...+||+||+.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGV-KELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYD 89 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSC-SCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCc-cccCCCCCCChhhcccHHHHhhccCCCCCcEEecHH
Confidence 457899999999999999999999752 268899999999985 221100000000000111111 23577877752
Q ss_pred -----chhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCc
Q 022736 104 -----KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (293)
Q Consensus 104 -----~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~ 178 (293)
...+...+..+- .+++++||||||..++..... + .......... +.+++++|+.......+........
T Consensus 90 ~~~~~~~~l~~~l~~~~---~~~d~iiiDtpG~~~~~~~~~-l-~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~ 163 (262)
T 1yrb_A 90 RLMEKFNEYLNKILRLE---KENDYVLIDTPGQMETFLFHE-F-GVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFA 163 (262)
T ss_dssp HHHTTHHHHHHHHHHHH---HHCSEEEEECCSSHHHHHHSH-H-HHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHh---hcCCEEEEeCCCccchhhhhh-h-HHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHH
Confidence 122223333322 347999999999876543311 0 0001112245 7899999987543332211000000
Q ss_pred hHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEE---------------EeecCCCCchhhcccccC
Q 022736 179 PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI---------------RSVRCQVDLSEVLNCRAY 243 (293)
Q Consensus 179 ~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~---------------~~~~~~~~~~~i~~~sa~ 243 (293)
.....+...+.++|+||+|+.+.. ....+.+.++.+++.+..+ ...........++++|++
T Consensus 164 ~~~~~~~~~p~~iv~NK~D~~~~~----~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~ 239 (262)
T 1yrb_A 164 LLIDLRLGATTIPALNKVDLLSEE----EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAK 239 (262)
T ss_dssp HHHHHHHTSCEEEEECCGGGCCHH----HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTT
T ss_pred HHHhcccCCCeEEEEecccccccc----cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEec
Confidence 112344567899999999987643 1222333222111100000 000000011257899999
Q ss_pred Ccchhhhhhhhhhhh
Q 022736 244 DATHVTRLEGLLEEH 258 (293)
Q Consensus 244 ~~~~~~~l~~~l~~~ 258 (293)
+++|++++.+++.+.
T Consensus 240 ~~~gi~~l~~~i~~~ 254 (262)
T 1yrb_A 240 TREGFEDLETLAYEH 254 (262)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHH
Confidence 999999999998654
No 11
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.71 E-value=3.2e-17 Score=135.48 Aligned_cols=173 Identities=13% Similarity=0.171 Sum_probs=100.3
Q ss_pred cccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCe-EEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcc
Q 022736 20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGC 98 (293)
Q Consensus 20 ~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~-vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gc 98 (293)
+..+.+.....+.+-++++|.+|+|||||+|+|+. .+ ...+...+|.+......
T Consensus 11 s~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~----~~~~~~~~~~~~~t~~~~~~--------------------- 65 (195)
T 1svi_A 11 SAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLIN----RKNLARTSSKPGKTQTLNFY--------------------- 65 (195)
T ss_dssp EESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHT----C-------------CCEEEE---------------------
T ss_pred ecCChhhCCCCCCCEEEEECCCCCCHHHHHHHHhC----CCCccccCCCCCceeeEEEE---------------------
Confidence 44444555566788899999999999999999994 32 33344444431111100
Q ss_pred eeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCc------HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhh
Q 022736 99 ICCTVKHSLVQALEQLVQRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKY 172 (293)
Q Consensus 99 icc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~------~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~ 172 (293)
..+.++.++||||+.++ ....... ...++.....++++++|+|+.......+..
T Consensus 66 -------------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 125 (195)
T 1svi_A 66 -------------------IINDELHFVDVPGYGFAKVSKSEREAWGRM-IETYITTREELKAVVQIVDLRHAPSNDDVQ 125 (195)
T ss_dssp -------------------EETTTEEEEECCCBCCCSSCHHHHHHHHHH-HHHHHHHCTTEEEEEEEEETTSCCCHHHHH
T ss_pred -------------------EECCcEEEEECCCCCccccCHHHHHHHHHH-HHHHHhhhhcCCEEEEEEECCCCCCHHHHH
Confidence 01125789999997654 2222111 122333334568999999987643322210
Q ss_pred cccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHh-hcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736 173 RHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHE-INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL 251 (293)
Q Consensus 173 ~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~-lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l 251 (293)
+..++.+...+.++|+||+|+.+..+ .......+++ +... ....++.+|+++|.|++++
T Consensus 126 -----~~~~~~~~~~p~i~v~nK~Dl~~~~~----~~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~gv~~l 185 (195)
T 1svi_A 126 -----MYEFLKYYGIPVIVIATKADKIPKGK----WDKHAKVVRQTLNID-----------PEDELILFSSETKKGKDEA 185 (195)
T ss_dssp -----HHHHHHHTTCCEEEEEECGGGSCGGG----HHHHHHHHHHHHTCC-----------TTSEEEECCTTTCTTHHHH
T ss_pred -----HHHHHHHcCCCEEEEEECcccCChHH----HHHHHHHHHHHHccc-----------CCCceEEEEccCCCCHHHH
Confidence 22344445678999999999987653 2333333332 2210 1235788999999999999
Q ss_pred hhhhhh
Q 022736 252 EGLLEE 257 (293)
Q Consensus 252 ~~~l~~ 257 (293)
..++.+
T Consensus 186 ~~~l~~ 191 (195)
T 1svi_A 186 WGAIKK 191 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988864
No 12
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.71 E-value=4.1e-17 Score=145.11 Aligned_cols=167 Identities=20% Similarity=0.249 Sum_probs=108.3
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
..+.+.++|+|.+|+|||||+|+|+ +.++++++..++++. ..... .
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~----g~~~~i~s~~~~tTr----~~~~g----i---------------------- 50 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLL----GQKISITSRKAQTTR----HRIVG----I---------------------- 50 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHH----TCSEEECCCCSSCCS----SCEEE----E----------------------
T ss_pred cccCCEEEEECCCCCCHHHHHHHHH----CCCccccCCCCCcce----eeEEE----E----------------------
Confidence 3577899999999999999999999 777887776666521 11100 0
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCC-CcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 109 QALEQLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~-~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
+ ..++.++.++||||+. .+.......+..........+|.+++|+|+.. ....+.. +...+.+...
T Consensus 51 ------~-~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~-----i~~~l~~~~~ 117 (301)
T 1ega_A 51 ------H-TEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEM-----VLNKLREGKA 117 (301)
T ss_dssp ------E-EETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHH-----HHHHHHSSSS
T ss_pred ------E-EECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHH-----HHHHHHhcCC
Confidence 0 0234568899999987 44443333333344455567899999999976 3222210 2222333357
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|.++++||+|+.+.. ..+...++.+... .++..++++|++++.|++.+.+++...
T Consensus 118 P~ilvlNK~D~~~~~------~~~~~~l~~l~~~----------~~~~~~i~iSA~~g~~v~~l~~~i~~~ 172 (301)
T 1ega_A 118 PVILAVNKVDNVQEK------ADLLPHLQFLASQ----------MNFLDIVPISAETGLNVDTIAAIVRKH 172 (301)
T ss_dssp CEEEEEESTTTCCCH------HHHHHHHHHHHTT----------SCCSEEEECCTTTTTTHHHHHHHHHTT
T ss_pred CEEEEEECcccCccH------HHHHHHHHHHHHh----------cCcCceEEEECCCCCCHHHHHHHHHHh
Confidence 899999999998622 2333444433221 122457899999999999999888653
No 13
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.68 E-value=6.1e-17 Score=137.36 Aligned_cols=183 Identities=22% Similarity=0.317 Sum_probs=122.3
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
.+.+.++|+|++|+|||||+++|+.. ....+++++.++++. .+|...+... + ...+.+.+||+||....++.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~--~~d~~~~~~~--~---~~~~~~~~~~~~~l~~~~~~ 108 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIA--KFDAERMEKH--G---AKVVPLNTGKECHLDAHLVG 108 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTT--HHHHHHHHTT--T---CEEEEEECTTCSSCCHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCC--CccHHHHHhc--C---CcEEEecCCceEeccHHHHH
Confidence 46789999999999999999999975 334689999999984 4555554432 1 13456678999876555555
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCC-CcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 109 QALEQLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~-~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
+.+..+. ..+++++++|++|.. .+.. + . ...+.++.++|+....... ..+ ..++..
T Consensus 109 ~~~~~l~--~~~~d~~~id~~g~i~~~~s----~------~--~~~~~~~~v~~~~~~~~~~------~~~---~~~~~~ 165 (226)
T 2hf9_A 109 HALEDLN--LDEIDLLFIENVGNLICPAD----F------D--LGTHKRIVVISTTEGDDTI------EKH---PGIMKT 165 (226)
T ss_dssp HHHTTSC--GGGCSEEEEECCSCSSGGGG----C------C--CSCSEEEEEEEGGGCTTTT------TTC---HHHHTT
T ss_pred HHHHHHh--cCCCCEEEEeCCCCccCcch----h------h--hccCcEEEEEecCcchhhH------hhh---hhHhhc
Confidence 4444332 246799999999942 2211 1 1 1123357788864322111 112 234678
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+++|+||+|+.+..+ .....+.+.++.+++.+ .++.+|+++|+|++++..++.+
T Consensus 166 ~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~-------------~~~~~Sa~~g~gv~~l~~~l~~ 220 (226)
T 2hf9_A 166 ADLIVINKIDLADAVG--ADIKKMENDAKRINPDA-------------EVVLLSLKTMEGFDKVLEFIEK 220 (226)
T ss_dssp CSEEEEECGGGHHHHT--CCHHHHHHHHHHHCTTS-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred CCEEEEeccccCchhH--HHHHHHHHHHHHhCCCC-------------eEEEEEecCCCCHHHHHHHHHH
Confidence 9999999999875321 13567777777766543 4578999999999999888754
No 14
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.68 E-value=5.4e-17 Score=141.03 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=101.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
+|.++++|.+|+|||||+|+|+ |.+ ..+.+.+|.+.......+.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~----g~~-~~v~~~pg~Tv~~~~~~~~------------------------------- 44 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALT----NAN-QRVGNWPGVTVEKKTGEFL------------------------------- 44 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHH----TTS-EEEEECTTSSSEEEEEEEE-------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHH----CCC-CCccCCCCceEEEEEEEEE-------------------------------
Confidence 4678999999999999999999 444 3456677753211111111
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHH-----HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPL-----ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~-----~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~ 186 (293)
.++.++.|+||||+....+. .+......++ ....+|++++|+|+++...... +...+....
T Consensus 45 ------~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~-~~~~~d~vi~VvDas~~~~~~~-------l~~~l~~~~ 110 (256)
T 3iby_A 45 ------LGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV-IDLEYDCIINVIDACHLERHLY-------LTSQLFELG 110 (256)
T ss_dssp ------ETTEEEEEEECCCCSSCC------CHHHHHHHHHH-HHSCCSEEEEEEEGGGHHHHHH-------HHHHHTTSC
T ss_pred ------ECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH-hhCCCCEEEEEeeCCCchhHHH-------HHHHHHHcC
Confidence 12346789999998765431 1111111111 1146899999999998544322 223344456
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.|.++|+||+|+.+..........+.+.+. .+++++||++|+|++++.+++.+.
T Consensus 111 ~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg------------------~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 111 KPVVVALNMMDIAEHRGISIDTEKLESLLG------------------CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp SCEEEEEECHHHHHHTTCEECHHHHHHHHC------------------SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCEEEEEEChhcCCcCCcHHHHHHHHHHcC------------------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 799999999998765443334444444331 257889999999999999988654
No 15
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.66 E-value=1.6e-16 Score=139.40 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=102.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
.+.|+++|.+|+|||||+|+|+ +.+ ..+.+.+|.+.......+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~----g~~-~~v~~~~g~t~~~~~~~~~------------------------------- 46 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLT----GSR-QRVGNWAGVTVERKEGQFS------------------------------- 46 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH----TTC-EEEEECTTSSSEEEEEEEE-------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHh----CCC-cccCCCCCeeEEEEEEEEE-------------------------------
Confidence 4568899999999999999999 555 4667778753221111111
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHH------HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLA------SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~------~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi 185 (293)
..+..+.|+||||+.+..... +.+. .. +.....+|.+++|+|+++...... +...+.+.
T Consensus 47 ------~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~-~~-~~~~~~~d~ii~VvD~~~~~~~~~-------~~~~l~~~ 111 (274)
T 3i8s_A 47 ------TTDHQVTLVDLPGTYSLTTISSQTSLDEQIA-CH-YILSGDADLLINVVDASNLERNLY-------LTLQLLEL 111 (274)
T ss_dssp ------CSSCEEEEEECCCCSCSCC----CCHHHHHH-HH-HHHHTCCSEEEEEEEGGGHHHHHH-------HHHHHHHH
T ss_pred ------eCCCceEEEECcCCCccccccccCCHHHHHH-HH-HHhhcCCCEEEEEecCCChHHHHH-------HHHHHHhc
Confidence 123467899999977644211 1111 11 112247899999999998554322 23344556
Q ss_pred hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
..|.++|+||+|+.+..........+.+.+. .+++++||++|+|++++..++.+.
T Consensus 112 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg------------------~~~i~~SA~~g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 112 GIPCIVALNMLDIAEKQNIRIEIDALSARLG------------------CPVIPLVSTRGRGIEALKLAIDRY 166 (274)
T ss_dssp TCCEEEEEECHHHHHHTTEEECHHHHHHHHT------------------SCEEECCCGGGHHHHHHHHHHHTC
T ss_pred CCCEEEEEECccchhhhhHHHHHHHHHHhcC------------------CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999998765433233344443331 246889999999999999988654
No 16
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.63 E-value=7.7e-16 Score=144.44 Aligned_cols=172 Identities=19% Similarity=0.161 Sum_probs=89.1
Q ss_pred cccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcce
Q 022736 20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI 99 (293)
Q Consensus 20 ~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gci 99 (293)
+.+--+....++.|.|+|+|.+|+|||||+|+|+ +.+.+++...+|. ++...... .
T Consensus 11 ~~~~~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~----~~~~~~v~~~~g~----t~~~~~~~---------~------- 66 (456)
T 4dcu_A 11 SSGLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIA----GERISIVEDTPGV----TRDRIYSS---------A------- 66 (456)
T ss_dssp ------------CCEEEEECSSSSSHHHHHHHHE----EEEEC---------------CEEEE---------C-------
T ss_pred cCCCCCChhhcCCCEEEEECCCCCcHHHHHHHHh----CCCCcccCCCCCc----ceeEEEEE---------E-------
Confidence 4444445556678999999999999999999999 6777777777775 22211110 0
Q ss_pred eeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCch
Q 022736 100 CCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (293)
Q Consensus 100 cc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (293)
...+..+.++||||+..........+..........+|.+++|+|+.......+.. +.
T Consensus 67 -----------------~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~-----l~ 124 (456)
T 4dcu_A 67 -----------------EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEE-----VA 124 (456)
T ss_dssp -----------------TTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHH-----HH
T ss_pred -----------------EECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHH-----HH
Confidence 01345689999999764221111111111222335689999999997644433321 23
Q ss_pred HHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 180 ~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
..+.+...+.++|+||+|+.+... . +. ....+.+..++++||.+|.|++++.+++.+.
T Consensus 125 ~~l~~~~~pvilV~NK~D~~~~~~------~----~~-----------e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~ 182 (456)
T 4dcu_A 125 KILYRTKKPVVLAVNKLDNTEMRA------N----IY-----------DFYSLGFGEPYPISGTHGLGLGDLLDAVAEH 182 (456)
T ss_dssp HHHTTCCSCEEEEEECC-------------------C-----------CSGGGSSSSEEECCTTTCTTHHHHHHHHHTT
T ss_pred HHHHHcCCCEEEEEECccchhhhh------h----HH-----------HHHHcCCCceEEeecccccchHHHHHHHHhh
Confidence 344455678999999999874321 0 00 0111234566899999999999998887654
No 17
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.62 E-value=2.5e-15 Score=135.49 Aligned_cols=215 Identities=17% Similarity=0.175 Sum_probs=123.7
Q ss_pred EEEccccccccCccc-----CCCCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCC
Q 022736 12 VRIDETTHEFSNSHE-----NDDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEG 84 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~-----~~~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~ 84 (293)
+++.+++++|..... +.-.+..+++|+|++|||||||+|.|+.. ..+.+++++..++++ ...+.......
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~-~~~~~~~~~~~-- 106 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS-TRTGGSILGDK-- 106 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG-GSSCCCSSCCG--
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc-cccccchHHHh--
Confidence 455666666643222 12345678999999999999999999863 346789999988865 21111111100
Q ss_pred CcchhhhhhccCcce-----eeccchhHHHHHHHHH-hhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEE
Q 022736 85 GALVEEWVELANGCI-----CCTVKHSLVQALEQLV-QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT 158 (293)
Q Consensus 85 ~~~~~~~~~l~~gci-----cc~~~~~l~~~l~~l~-~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 158 (293)
..+..+.+-.+.|+ ||++.+....+.+.+. ....+++++||||||+.++.... ...+|.+++
T Consensus 107 -~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v-----------~~~~d~vl~ 174 (337)
T 2qm8_A 107 -TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAV-----------ADLTDFFLV 174 (337)
T ss_dssp -GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH-----------HTTSSEEEE
T ss_pred -hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhH-----------HhhCCEEEE
Confidence 00111222344554 4666555555544432 22468999999999998764222 146788999
Q ss_pred EEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCC-CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhh
Q 022736 159 VVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPER-SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237 (293)
Q Consensus 159 vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~-~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i 237 (293)
++|+..... ... . .. ...+.++++++||+|+....+ ......++...+..++|... + ...++
T Consensus 175 v~d~~~~~~-~~~---i---~~--~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~------~--~~~~v 237 (337)
T 2qm8_A 175 LMLPGAGDE-LQG---I---KK--GIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSA------T--WTPPV 237 (337)
T ss_dssp EECSCC----------C---CT--THHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBT------T--BCCCE
T ss_pred EEcCCCccc-HHH---H---HH--HHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhcccccc------C--CCCCE
Confidence 999864321 110 0 00 113568999999999865321 00011223333333333110 0 01356
Q ss_pred cccccCCcchhhhhhhhhhhh
Q 022736 238 LNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 238 ~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.+|+.+++|+++|.+++.+.
T Consensus 238 l~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 238 VTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp EEEBTTTTBSHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHH
Confidence 779999999999999888654
No 18
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.62 E-value=7e-16 Score=134.98 Aligned_cols=160 Identities=17% Similarity=0.247 Sum_probs=99.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+.+.++++|.+|||||||+|+|+ +.+. .+.+.+|.+.......+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~----g~~~-~~~~~~~~t~~~~~~~~~------------------------------ 46 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALT----GLRQ-HVGNWPGVTVEKKEGIME------------------------------ 46 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHH----TTCE-EEEECTTSSCEEEEEEEE------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHh----CCCc-ccCCCCCeEEEeeEEEEE------------------------------
Confidence 35678999999999999999999 5444 455666642221111111
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-cc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FA 188 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-~a 188 (293)
..+..+.|+||||+....... ....... +-....+|.+++|+|+++....... ...+.... .|
T Consensus 47 -------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~~~~d~vi~v~D~~~~~~~~~~-------~~~~~~~~~~p 111 (271)
T 3k53_A 47 -------YREKEFLVVDLPGIYSLTAHSIDELIARN-FILDGNADVIVDIVDSTCLMRNLFL-------TLELFEMEVKN 111 (271)
T ss_dssp -------ETTEEEEEEECCCCSCCCSSCHHHHHHHH-HHHTTCCSEEEEEEEGGGHHHHHHH-------HHHHHHTTCCS
T ss_pred -------ECCceEEEEeCCCccccccCCHHHHHHHH-hhhccCCcEEEEEecCCcchhhHHH-------HHHHHhcCCCC
Confidence 123457899999977543211 0011011 1112468899999999986543321 12223344 78
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.++|+||+|+.+..........+.+.+. .+++++|+.+|.|++++.+++...
T Consensus 112 ~ilv~NK~Dl~~~~~~~~~~~~l~~~lg------------------~~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 112 IILVLNKFDLLKKKGAKIDIKKMRKELG------------------VPVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp EEEEEECHHHHHHHTCCCCHHHHHHHHS------------------SCEEECBGGGTBTHHHHHHHHHHH
T ss_pred EEEEEEChhcCcccccHHHHHHHHHHcC------------------CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 9999999997654332233444444432 246789999999999998888653
No 19
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.61 E-value=9e-16 Score=133.45 Aligned_cols=160 Identities=16% Similarity=0.116 Sum_probs=98.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+...++++|.+|+|||||+|+|+ +.+.. +.+.+|.+.......+.
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~----g~~~~-~~~~pg~tv~~~~~~~~------------------------------ 48 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALT----GTKQY-VANWPGVTVEKKEGVFT------------------------------ 48 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHH----TTCEE-EEECTTSCCEEEEEEEE------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHH----CCCCc-ccCCCCceEEEEEEEEE------------------------------
Confidence 45668899999999999999999 44433 56666652221111110
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ 189 (293)
..+.++.|+||||.....+.. +......++. ...+|++++|+|+++...... +...+.....|.
T Consensus 49 -------~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~~~~d~ii~V~D~t~~~~~~~-------~~~~l~~~~~pv 113 (258)
T 3a1s_A 49 -------YKGYTINLIDLPGTYSLGYSSIDEKIARDYLL-KGDADLVILVADSVNPEQSLY-------LLLEILEMEKKV 113 (258)
T ss_dssp -------ETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH-HSCCSEEEEEEETTSCHHHHH-------HHHHHHTTTCCE
T ss_pred -------ECCeEEEEEECCCcCccCCCCHHHHHHHHHHh-hcCCCEEEEEeCCCchhhHHH-------HHHHHHhcCCCE
Confidence 123568899999976543211 0000011111 146789999999988654332 122333446789
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
++|+||+|+.+.........++.+.+. -+++.+||++|.|++++..++.+.
T Consensus 114 ilv~NK~Dl~~~~~i~~~~~~l~~~lg------------------~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 114 ILAMTAIDEAKKTGMKIDRYELQKHLG------------------IPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp EEEEECHHHHHHTTCCBCHHHHHHHHC------------------SCEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEECcCCCCccchHHHHHHHHHHcC------------------CCEEEEEeeCCcCHHHHHHHHHHH
Confidence 999999998754332223344433331 246889999999999999887653
No 20
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.61 E-value=1.4e-15 Score=141.93 Aligned_cols=160 Identities=20% Similarity=0.178 Sum_probs=87.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
.|.|+|+|.+|+|||||+|+|+ +.+.+++...+|. +++..... .
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~----~~~~~~v~~~~g~----T~d~~~~~---------~------------------- 46 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIA----GERISIVEDTPGV----TRDRIYSS---------A------------------- 46 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHE----EEECC---------------CEEEE---------C-------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCC----ccceEEEE---------E-------------------
Confidence 4789999999999999999999 5666777777775 22221110 0
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEE
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV 191 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ii 191 (293)
...+.++.|+||||+.....-....+..........+|++++|+|+.......+.. +...+.....+.++
T Consensus 47 -----~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~-----~~~~l~~~~~pvil 116 (436)
T 2hjg_A 47 -----EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEE-----VAKILYRTKKPVVL 116 (436)
T ss_dssp -----TTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHTTCCSCEEE
T ss_pred -----EECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEEE
Confidence 01345689999999753211111111111223345789999999998654433221 23334445678999
Q ss_pred EEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 192 vlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|+||+|+.+.... .. ....+.+.+++++||.+|.|+++|.+++.+.
T Consensus 117 v~NK~D~~~~~~~----------------~~-----~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~ 162 (436)
T 2hjg_A 117 AVNKLDNTEMRAN----------------IY-----DFYSLGFGEPYPISGTHGLGLGDLLDAVAEH 162 (436)
T ss_dssp EEECCCC-----C----------------CC-----SSGGGSSCCCEECBTTTTBTHHHHHHHHHHT
T ss_pred EEECccCccchhh----------------HH-----HHHHcCCCCeEEEeCcCCCChHHHHHHHHHh
Confidence 9999998753210 00 0111234468899999999999999988654
No 21
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.59 E-value=9.9e-16 Score=143.06 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=89.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
+|.++|+|.+|+|||||+|+|+ +.+.+++...+|. +++.... .++
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~----~~~~~~v~~~~g~----T~d~~~~---------~~~------------------ 45 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLV----KKKKAIVEDEEGV----TRDPVQD---------TVE------------------ 45 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHH----C------------------CCSEE---------EEE------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh----CCCCceecCCCCC----ccceeeE---------EEE------------------
Confidence 4789999999999999999999 6777777877775 2222111 000
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736 112 EQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i 190 (293)
..+.++.++||||+.... ......+..........+|++++|+|+.......+.. +..++.....+.+
T Consensus 46 ------~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~-----i~~~l~~~~~p~i 114 (439)
T 1mky_A 46 ------WYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDES-----LADFLRKSTVDTI 114 (439)
T ss_dssp ------ETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHH-----HHHHHHHHTCCEE
T ss_pred ------ECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCEE
Confidence 123457899999976421 1000001111223346789999999997643332211 2344555678899
Q ss_pred EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+||+|+.+.. ...+. .... .+.+.+++++||.+|.|+++|.+++.+
T Consensus 115 lv~NK~D~~~~~-----~~~~~---~~~~-----------~lg~~~~~~iSA~~g~gv~~L~~~i~~ 162 (439)
T 1mky_A 115 LVANKAENLREF-----EREVK---PELY-----------SLGFGEPIPVSAEHNINLDTMLETIIK 162 (439)
T ss_dssp EEEESCCSHHHH-----HHHTH---HHHG-----------GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred EEEeCCCCcccc-----HHHHH---HHHH-----------hcCCCCEEEEeccCCCCHHHHHHHHHH
Confidence 999999975320 01110 1111 112345789999999999999888754
No 22
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.57 E-value=1.8e-15 Score=142.21 Aligned_cols=160 Identities=20% Similarity=0.169 Sum_probs=80.8
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
|+|+|.+|+|||||+|+|+ +.+.+++...+|++.......+ .
T Consensus 236 V~ivG~~nvGKSSLln~L~----~~~~a~vs~~~gtT~d~~~~~i-------------~--------------------- 277 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLNTLL----GQERAIVSHMPGTTRDYIEECF-------------I--------------------- 277 (476)
T ss_dssp EEEECCTTSSHHHHHHHCC----------------------CEEE-------------E---------------------
T ss_pred EEEECCCCCCHHHHHHHHh----CCCCcccCCCCCceEEEEEEEE-------------E---------------------
Confidence 7889999999999999999 5556677777775222111101 0
Q ss_pred HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-hccCEEEE
Q 022736 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADVVIL 193 (293)
Q Consensus 115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-~~a~iivl 193 (293)
.++..+.|+||||+.++....+.+...........+|.+++|+|++........ . ....++.++ ..+.++|+
T Consensus 278 ---~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~-~---~~~~~l~~l~~~piIvV~ 350 (476)
T 3gee_A 278 ---HDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDEL-T---EIRELKAAHPAAKFLTVA 350 (476)
T ss_dssp ---ETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGH-H---HHHHHHHHCTTSEEEEEE
T ss_pred ---ECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhh-H---HHHHHHHhcCCCCEEEEE
Confidence 133468999999998766555544444445566789999999999864321000 0 011222222 46889999
Q ss_pred eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 259 (293)
Q Consensus 194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~ 259 (293)
||+|+.+... ... +.+...+ ...++.+||++|+|++++.+++.+..
T Consensus 351 NK~Dl~~~~~----~~~--~~l~~~~--------------~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 351 NKLDRAANAD----ALI--RAIADGT--------------GTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp ECTTSCTTTH----HHH--HHHHHHH--------------TSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred ECcCCCCccc----hhH--HHHHhcC--------------CCceEEEEECCCCCHHHHHHHHHHHH
Confidence 9999987642 111 2222210 12468899999999999999987643
No 23
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.56 E-value=4.2e-15 Score=130.14 Aligned_cols=157 Identities=21% Similarity=0.260 Sum_probs=95.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
...++++|.+|+|||||+|+|+.. + ..+.+.+|.+.......+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~----~-~~v~~~pg~tv~~~~~~~-------------------------------- 45 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH----N-QRVGNWPGVTVERKSGLV-------------------------------- 45 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC----C-CCCCSSSCCCCSCEEEEC--------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC----C-CcccCCCCCcEEEEEEEE--------------------------------
Confidence 356889999999999999999953 2 123455554211100000
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHH--HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~--~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ 189 (293)
.. +.++.++||||.....+. .+.+. ..++. ....|++++|+|+++...... +...+.+...|.
T Consensus 46 -----~~-~~~l~l~DtpG~~~~~~~~~~e~v~-~~~~~-~~~~d~vi~V~D~t~~e~~~~-------~~~~l~~~~~p~ 110 (272)
T 3b1v_A 46 -----KK-NKDLEIQDLPGIYSMSPYSPEAKVA-RDYLL-SQRADSILNVVDATNLERNLY-------LTTQLIETGIPV 110 (272)
T ss_dssp -----TT-CTTEEEEECCCCSCSSCSSHHHHHH-HHHHH-TTCCSEEEEEEEGGGHHHHHH-------HHHHHHHTCSCE
T ss_pred -----ec-CCeEEEEECCCcCccCCCChHHHHH-HHHHh-cCCCCEEEEEecCCchHhHHH-------HHHHHHhcCCCE
Confidence 01 356889999997654311 11111 11121 135889999999987644321 122233346789
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
++++||+|+.+..........+.+.+. .+++++||++|+|++++..++.+.
T Consensus 111 ilv~NK~Dl~~~~~~~~~~~~l~~~lg------------------~~vi~~SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 111 TIALNMIDVLDGQGKKINVDKLSYHLG------------------VPVVATSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp EEEEECHHHHHHTTCCCCHHHHHHHHT------------------SCEEECBTTTTBSHHHHHHHHHHS
T ss_pred EEEEEChhhCCcCCcHHHHHHHHHHcC------------------CCEEEEEccCCCCHHHHHHHHHHH
Confidence 999999998654322123334433331 246889999999999999888653
No 24
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.56 E-value=7.6e-15 Score=140.44 Aligned_cols=153 Identities=19% Similarity=0.238 Sum_probs=85.2
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCC-----------CCeEEEEEcCCCCccccchhhhhcCCCCcchhhh----hhc
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKH-----------GKRIAVILNEFGEEIGVERAMINEGEGGALVEEW----VEL 94 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~-----------~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~----~~l 94 (293)
.+.|.|+|+|.+|+|||||+|+|+.... ....+++.++.+. ...+..++.+. ......+ ..+
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~-i~~g~~l~~~~--~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEG-TVPGNALVVDP--EKPFRKLNPFGNTF 139 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSE-EECCC--------------------CC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCccc-ccCCceeeecC--cccHHHHhhhcccc
Confidence 4679999999999999999999996421 0113444444432 22222222110 0000000 123
Q ss_pred cCcceeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHH--HHHhh-hcchhhccccccccEEEEEcccch-HHHHh
Q 022736 95 ANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAP--LASVL-WLDDQLESAVRLDSIITVVDAKNL-LFQID 170 (293)
Q Consensus 95 ~~gcicc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~--~~~~~-~~~~~~~~~~~~d~vi~vvDa~~~-~~~~~ 170 (293)
.+||+||+.+.++.. +++||||||+.++.. +.+.+ +..........+|.+++|+|+... .....
T Consensus 140 ~~~~~~~~~~~~ll~------------~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~ 207 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLE------------SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF 207 (550)
T ss_dssp CTTEEEEECCCHHHH------------HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH
T ss_pred cccceEEeccccccC------------CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH
Confidence 489999999977653 267999999886322 11110 001111223578999999999763 11111
Q ss_pred hhcccCCchHHHHHHhccCEEEEeCCCCCCCC
Q 022736 171 KYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 202 (293)
Q Consensus 171 ~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~ 202 (293)
. .+...+.+...+.++|+||+|+++.+
T Consensus 208 ~-----~~l~~l~~~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 208 S-----EAIGALRGHEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp H-----HHHHHTTTCGGGEEEEEECGGGSCHH
T ss_pred H-----HHHHHHHhcCCCEEEEEECCCccCHH
Confidence 0 02233344456889999999999754
No 25
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.55 E-value=4.5e-14 Score=114.04 Aligned_cols=156 Identities=13% Similarity=0.059 Sum_probs=85.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
..-++++|.+|+|||||+|+|+. .+........|. +.... .+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~----~~~~~~~~~~~~----~~~~~-----------~~~~~---------------- 48 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG----KQERDLHEQLGE----DVYER-----------TLTVD---------------- 48 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC----C-----CCCSSS----SEEEE-----------EEEET----------------
T ss_pred EEEEEEECCCCccHHHHHHHHhc----CCCccccCcccc----ceeEE-----------EEEEC----------------
Confidence 45688899999999999999994 333333333332 11000 00000
Q ss_pred HHHHhhcCCCCEEEEecCCCCCc--HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----H
Q 022736 112 EQLVQRKERLDHILLETTGLANP--APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----I 185 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~--~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i 185 (293)
.....+.++||||.... ..+... .....+.+++|+|..+....... . .+...+.+ -
T Consensus 49 ------~~~~~~~~~D~~g~~~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~-~---~~~~~l~~~~~~~ 110 (175)
T 2nzj_A 49 ------GEDTTLVVVDTWEAEKLDKSWSQES--------CLQGGSAYVIVYSIADRGSFESA-S---ELRIQLRRTHQAD 110 (175)
T ss_dssp ------TEEEEEEEECCC-------CHHHHH--------TTTSCSEEEEEEETTCHHHHHHH-H---HHHHHHHHCC---
T ss_pred ------CEEEEEEEEecCCCCccchhhhHHh--------hcccCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhhccC
Confidence 11235789999997652 111111 11346889999999865432111 0 01111221 1
Q ss_pred hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
..|.++|+||+|+.+..+. ..+......+..+ ..++.+||++|+|++++..++.+
T Consensus 111 ~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~l~~ 165 (175)
T 2nzj_A 111 HVPIILVGNKADLARCREV--SVEEGRACAVVFD---------------CKFIETSATLQHNVAELFEGVVR 165 (175)
T ss_dssp -CCEEEEEECTTCTTTCCS--CHHHHHHHHHHHT---------------SEEEECBTTTTBSHHHHHHHHHH
T ss_pred CCCEEEEEEChhhcccccc--CHHHHHHHHHHcC---------------CeEEEEecCCCCCHHHHHHHHHH
Confidence 4678999999999865432 2333333333322 24678999999999999988854
No 26
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.55 E-value=3.1e-14 Score=117.66 Aligned_cols=160 Identities=17% Similarity=0.150 Sum_probs=93.4
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
....+-|+|+|.+|+|||||+++|+. .+...+...+. .+.....+.
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~----~~~~~~~~~~t--~~~~~~~~~---------------------------- 59 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKP----AQSSSKHITAT--VGYNVETFE---------------------------- 59 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSC----CC----CCCCC--SSEEEEEEE----------------------------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc----CCCcccccccc--cceeEEEEE----------------------------
Confidence 44667789999999999999999994 33222211111 221111110
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--H-
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I- 185 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i- 185 (293)
.....+.|+||||.......... ....+|++|+|+|+........... .+..+... +
T Consensus 60 ---------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~D~~~~~s~~~~~~---~~~~~~~~~~~~ 119 (199)
T 4bas_A 60 ---------KGRVAFTVFDMGGAKKFRGLWET--------YYDNIDAVIFVVDSSDHLRLCVVKS---EIQAMLKHEDIR 119 (199)
T ss_dssp ---------ETTEEEEEEEECCSGGGGGGGGG--------GCTTCSEEEEEEETTCGGGHHHHHH---HHHHHHTSHHHH
T ss_pred ---------eCCEEEEEEECCCCHhHHHHHHH--------HHhcCCEEEEEEECCcHHHHHHHHH---HHHHHHhChhhh
Confidence 13456889999998654333321 2246899999999987533211100 01111111 1
Q ss_pred -------hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc--CCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 186 -------AFADVVILNKVDLVSPERSGDSLDELEKEIHEIN--SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 186 -------~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln--p~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
..+.++|+||+|+.+... ..++...+.... .. ....++.+||++|+|++++..++.
T Consensus 120 ~~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (199)
T 4bas_A 120 RELPGGGRVPFLFFANKMDAAGAKT----AAELVEILDLTTLMGD-----------HPFVIFASNGLKGTGVHEGFSWLQ 184 (199)
T ss_dssp SBCTTSCBCCEEEEEECTTSTTCCC----HHHHHHHHTHHHHHTT-----------SCEEEEECBTTTTBTHHHHHHHHH
T ss_pred hcccccCCCCEEEEEECcCCCCCCC----HHHHHHHhcchhhccC-----------CeeEEEEeeCCCccCHHHHHHHHH
Confidence 568899999999987642 344444443110 00 012578899999999999998886
Q ss_pred h
Q 022736 257 E 257 (293)
Q Consensus 257 ~ 257 (293)
+
T Consensus 185 ~ 185 (199)
T 4bas_A 185 E 185 (199)
T ss_dssp H
T ss_pred H
Confidence 5
No 27
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.55 E-value=4.6e-15 Score=118.32 Aligned_cols=158 Identities=21% Similarity=0.233 Sum_probs=89.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
+|-++++|.+|+|||||+|+|+.. +.......++.+.......+ .
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~----~~~~~~~~~~~~~~~~~~~~-------------~------------------ 45 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKK----RSAVVADVPGVTRDLKEGVV-------------E------------------ 45 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHC----CC-----------CCEEEEE-------------E------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC----CeeeccCCCCceecceEEEE-------------E------------------
Confidence 367899999999999999999953 22222333332110000000 0
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEE
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV 191 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ii 191 (293)
..+.++.++||||..........+ ..........++.+++++|+.......... +..++.+...+.++
T Consensus 46 ------~~~~~~~l~Dt~G~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~p~il 113 (161)
T 2dyk_A 46 ------TDRGRFLLVDTGGLWSGDKWEKKI-QEKVDRALEDAEVVLFAVDGRAELTQADYE-----VAEYLRRKGKPVIL 113 (161)
T ss_dssp ------ETTEEEEEEECGGGCSSSSCCHHH-HHHHHHHTTTCSEEEEEEESSSCCCHHHHH-----HHHHHHHHTCCEEE
T ss_pred ------eCCceEEEEECCCCCCccchHHHH-HHHHHHHHHhCCEEEEEEECCCcccHhHHH-----HHHHHHhcCCCEEE
Confidence 122357899999976532111000 011112235678999999998643222211 23344455678999
Q ss_pred EEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 192 vlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+||+|+.+..+ ... .+. ......++.+|+++|.|++++..++.+
T Consensus 114 v~nK~Dl~~~~~---~~~-------~~~-----------~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 158 (161)
T 2dyk_A 114 VATKVDDPKHEL---YLG-------PLY-----------GLGFGDPIPTSSEHARGLEELLEAIWE 158 (161)
T ss_dssp EEECCCSGGGGG---GCG-------GGG-----------GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred EEECcccccchH---hHH-------HHH-----------hCCCCCeEEEecccCCChHHHHHHHHH
Confidence 999999976431 001 110 112236789999999999999988754
No 28
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.54 E-value=7.3e-15 Score=137.82 Aligned_cols=169 Identities=20% Similarity=0.281 Sum_probs=102.6
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
...+-++++|.+|+|||||+|+|+ +.....+...+|++...-...+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~----~~~~~~~~~~~gtt~~~~~~~~~----------------------------- 239 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAML----GEERVIVSNVAGTTRDAVDTSFT----------------------------- 239 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH----TSTTEEECC------CTTSEEEE-----------------------------
T ss_pred cccceeEEecCCCCCHHHHHHHHh----CCCccccCCCCCeEEEEEEEEEE-----------------------------
Confidence 346678899999999999999999 44445666666652211000000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHH---HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~ 186 (293)
..+..+.|+||||+.+..... +.+.....+.....+|++++|+|+.......+.. +...+....
T Consensus 240 --------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~-----~~~~~~~~~ 306 (456)
T 4dcu_A 240 --------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-----IAGYAHEAG 306 (456)
T ss_dssp --------ETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----HHHHHHHTT
T ss_pred --------ECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHH-----HHHHHHHcC
Confidence 123368899999975432111 1111111223345688999999998643332211 233444456
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
.+.++|+||+|+.+..+ ...+++.+.++...+. ....+++.+||++|.|++++..++.
T Consensus 307 ~~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~SA~~g~gv~~l~~~i~ 364 (456)
T 4dcu_A 307 KAVVIVVNKWDAVDKDE--STMKEFEENIRDHFQF----------LDYAPILFMSALTKKRIHTLMPAII 364 (456)
T ss_dssp CEEEEEEECGGGSCCCS--SHHHHHHHHHHHHCGG----------GTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred CCEEEEEEChhcCCCch--HHHHHHHHHHHHhccc----------CCCCCEEEEcCCCCcCHHHHHHHHH
Confidence 78999999999987543 2456666666655332 1234678899999999998877664
No 29
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.53 E-value=1.9e-14 Score=130.93 Aligned_cols=170 Identities=21% Similarity=0.248 Sum_probs=92.6
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
+..+++++|+|++|||||||+|+|+. ... .+.+.++++.+.....+ .
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~----~~~-~~~~~~~~T~d~~~~~i-------------~--------------- 222 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTG----LTQ-KVDTKLFTTMSPKRYAI-------------P--------------- 222 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHC----C------------CCSCEEEE-------------E---------------
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHC----CCc-cccCCcccccCCEEEEE-------------E---------------
Confidence 34578899999999999999999994 332 33444444222111111 1
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCC--cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-
Q 022736 109 QALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI- 185 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~--~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi- 185 (293)
.++..+.++||+|+.. |....+.+ ...+.....+|.+++|+|+++........ ...+...+.++
T Consensus 223 ---------~~g~~v~l~DT~G~i~~lp~~lve~f--~~tl~~~~~aD~il~VvD~s~~~~~~~~~--~~~~~~~L~~l~ 289 (364)
T 2qtf_A 223 ---------INNRKIMLVDTVGFIRGIPPQIVDAF--FVTLSEAKYSDALILVIDSTFSENLLIET--LQSSFEILREIG 289 (364)
T ss_dssp ---------ETTEEEEEEECCCBCSSCCGGGHHHH--HHHHHGGGGSSEEEEEEETTSCHHHHHHH--HHHHHHHHHHHT
T ss_pred ---------ECCEEEEEEeCCCchhcCCHHHHHHH--HHHHHHHHhCCEEEEEEECCCCcchHHHH--HHHHHHHHHHhC
Confidence 1123467999999633 33333322 22344556789999999987643111100 00012333443
Q ss_pred --hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhh-cCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 186 --AFADVVILNKVDLVSPERSGDSLDELEKEIHEI-NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 186 --~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~l-np~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
..+.++|.||+|+.+.... .....+.+..+.+ .+. ..++++|+++++|++++.+++.+.
T Consensus 290 ~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~l~~~l~~~~-------------~~~~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 290 VSGKPILVTLNKIDKINGDLY-KKLDLVEKLSKELYSPI-------------FDVIPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp CCSCCEEEEEECGGGCCSCHH-HHHHHHHHHHHHHCSCE-------------EEEEECBTTTTBSHHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCchHH-HHHHHHHHHHHHhcCCC-------------CcEEEEECCCCcCHHHHHHHHHHH
Confidence 3578999999999864310 0111222222433 211 235789999999999999888653
No 30
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.53 E-value=3e-15 Score=121.85 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=89.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
.-++|+|.+|+|||||+|+|... +.+.+...++++.. .... .+.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~----~~~~~~~~~~~t~~----~~~~---------~~~------------------- 48 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR----EAAIVTDIAGTTRD----VLRE---------HIH------------------- 48 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS----CCSCCCSSTTCCCS----CEEE---------EEE-------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCC----CcceeeCCCCceec----eeeE---------EEE-------------------
Confidence 34788999999999999999943 22233444443111 1100 000
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccC
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFAD 189 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~ 189 (293)
.++..+.++||||+.+.....+.+...........+|.+++|+|+......... .+...+.+. ..|.
T Consensus 49 -----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~-----~~~~~~~~~~~~~~p~ 118 (172)
T 2gj8_A 49 -----IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA-----EIWPEFIARLPAKLPI 118 (172)
T ss_dssp -----ETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHH-----HHCHHHHHHSCTTCCE
T ss_pred -----ECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-----HHHHHHHHhcccCCCE
Confidence 112346799999986543222211111122234578899999999754321100 011122221 3578
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
++|+||+|+.+... .... . ....++.+||++|+|++++..++.+.
T Consensus 119 ilv~NK~Dl~~~~~-------------------~~~~-~----~~~~~~~~SA~~g~gv~~l~~~l~~~ 163 (172)
T 2gj8_A 119 TVVRNKADITGETL-------------------GMSE-V----NGHALIRLSARTGEGVDVLRNHLKQS 163 (172)
T ss_dssp EEEEECHHHHCCCC-------------------EEEE-E----TTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEECccCCcchh-------------------hhhh-c----cCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999864321 1111 1 12357899999999999999988654
No 31
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=2.2e-14 Score=118.43 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=93.5
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+..-|+|+|.+|+|||||+|+|+...... ......| .+..... +.+.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~~~~----~~~~~~~-----------~~~~-------------- 68 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH---NISPTIG----ASFMTKT-----------VPCG-------------- 68 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCT---TCCCCSS----EEEEEEE-----------EECS--------------
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCC---CcCCCcc----eeEEEEE-----------EEeC--------------
Confidence 344558889999999999999999642100 0111111 1110000 0000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---h
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---A 186 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~ 186 (293)
.....+.|+||||.......... ....+|.+++|+|+.......... .+...+.+. .
T Consensus 69 --------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~iilV~d~~~~~s~~~~~----~~~~~i~~~~~~~ 128 (192)
T 2fg5_A 69 --------NELHKFLIWDTAGQERFHSLAPM--------YYRGSAAAVIVYDITKQDSFYTLK----KWVKELKEHGPEN 128 (192)
T ss_dssp --------SSEEEEEEEEECCSGGGGGGTHH--------HHTTCSEEEEEEETTCTHHHHHHH----HHHHHHHHHSCTT
T ss_pred --------CEEEEEEEEcCCCchhhHhhhHH--------hhccCCEEEEEEeCCCHHHHHHHH----HHHHHHHHhCCCC
Confidence 12345789999996543332221 124578899999997654322110 012222222 4
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.+.++|+||+|+.+..+ ...+++.+..+..+ ..++.+|++++.|++++..++.+.
T Consensus 129 ~piiiv~NK~Dl~~~~~--v~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~ 183 (192)
T 2fg5_A 129 IVMAIAGNKCDLSDIRE--VPLKDAKEYAESIG---------------AIVVETSAKNAINIEELFQGISRQ 183 (192)
T ss_dssp CEEEEEEECGGGGGGCC--SCHHHHHHHHHTTT---------------CEEEECBTTTTBSHHHHHHHHHHT
T ss_pred CcEEEEEECcccccccc--cCHHHHHHHHHHcC---------------CEEEEEeCCCCcCHHHHHHHHHHH
Confidence 57899999999975432 23455555554332 246789999999999999998654
No 32
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.52 E-value=1.7e-14 Score=115.73 Aligned_cols=153 Identities=16% Similarity=0.085 Sum_probs=80.3
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~ 113 (293)
-++++|.+|+|||||+|+|+ +.........+|.+. +... .+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~----~~~~~~~~~~~~~~~--~~~~--------------~~~------------------ 45 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG----GVEDGPEAEAAGHTY--DRSI--------------VVD------------------ 45 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC----CC----------CEE--EEEE--------------EET------------------
T ss_pred EEEEECCCCCCHHHHHHHHc----CccccCCCCccccce--EEEE--------------EEC------------------
Confidence 37889999999999999998 433333333344311 1000 000
Q ss_pred HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccC
Q 022736 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFAD 189 (293)
Q Consensus 114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~ 189 (293)
.....+.++||||......+...+ ....+.+++|+|..+........ . +...+.+ -..|.
T Consensus 46 ----~~~~~~~i~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~-~---~~~~~~~~~~~~~~p~ 109 (166)
T 3q72_A 46 ----GEEASLMVYDIWEQDGGRWLPGHC--------MAMGDAYVIVYSVTDKGSFEKAS-E---LRVQLRRARQTDDVPI 109 (166)
T ss_dssp ----TEEEEEEEEECC-----------------------CCEEEEEEETTCHHHHHHHH-H---HHHHHHHCC---CCCE
T ss_pred ----CEEEEEEEEECCCCccchhhhhhh--------hhhCCEEEEEEECCCHHHHHHHH-H---HHHHHHHhcCCCCCCE
Confidence 122457899999976544333222 24578899999998654322110 0 1111111 23578
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
++|+||+|+.+..+. .........+..+ ..++.+||++|+|++++..++.+
T Consensus 110 ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 160 (166)
T 3q72_A 110 ILVGNKSDLVRSREV--SVDEGRACAVVFD---------------CKFIETSAALHHNVQALFEGVVR 160 (166)
T ss_dssp EEEEECTTCCSSCCS--CHHHHHHHHHHTT---------------CEEEECBGGGTBSHHHHHHHHHH
T ss_pred EEEEecccccccccc--CHHHHHHHHHHhC---------------CcEEEeccCCCCCHHHHHHHHHH
Confidence 999999999865432 3333333333322 24678999999999999888754
No 33
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.51 E-value=3e-14 Score=118.55 Aligned_cols=167 Identities=13% Similarity=0.111 Sum_probs=90.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+..-++++|.+|+|||||++++.. .+........+ .+...+ .
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~----~~~~~~~~t~~----~~~~~~-------------~----------------- 65 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD----DRLGQHVPTLH----PTSEEL-------------T----------------- 65 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC----C------CCCC----CSCEEE-------------E-----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc----CCCCccCCCCC----ceeEEE-------------E-----------------
Confidence 344578999999999999999984 33322221111 111100 0
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~ 187 (293)
.++.++.++||||......+... ....+|.+++|+|+.+......... .+..... ....
T Consensus 66 -------~~~~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~D~~~~~s~~~~~~---~~~~~~~~~~~~~~ 127 (198)
T 1f6b_A 66 -------IAGMTFTTFDLGGHIQARRVWKN--------YLPAINGIVFLVDCADHERLLESKE---ELDSLMTDETIANV 127 (198)
T ss_dssp -------ETTEEEEEEEECC----CCGGGG--------GGGGCSEEEEEEETTCGGGHHHHHH---HHHHHHTCGGGTTS
T ss_pred -------ECCEEEEEEECCCcHhhHHHHHH--------HHhcCCEEEEEEECCCHHHHHHHHH---HHHHHHhCcccCCC
Confidence 12246789999996543322211 1246789999999986532211100 0111111 1246
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEE--eecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR--SVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~--~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|.++|.||+|+.+.. ..+++.+.++........-. ..........++.+||++|+|++++.+|+.+
T Consensus 128 piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 128 PILILGNKIDRPEAI----SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp CEEEEEECTTSTTCC----CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred cEEEEEECCCccccC----CHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 789999999997632 34666666553321000000 0000011246789999999999999998864
No 34
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.51 E-value=3.1e-14 Score=116.70 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=92.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+...++++|.+|+|||||+|+|+. .+. .....++.+.......+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~----~~~-~~~~~~~~t~~~~~~~~~------------------------------ 50 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG----ENV-YIGNWPGVTVEKKEGEFE------------------------------ 50 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT----TCE-EEEECTTSCCEEEEEEEE------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC----CCc-cccCCCCeeccceEEEEE------------------------------
Confidence 456789999999999999999994 332 334445431111100000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHH--HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~--~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
.++..+.++||||....... .+.+. ..++. ...++.+++|+|+.++..... +...+.....+
T Consensus 51 -------~~~~~~~l~Dt~G~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~v~d~~~~~~~~~-------~~~~~~~~~~p 114 (188)
T 2wjg_A 51 -------YNGEKFKVVDLPGVYSLTANSIDEIIA-RDYII-NEKPDLVVNIVDATALERNLY-------LTLQLMEMGAN 114 (188)
T ss_dssp -------ETTEEEEEEECCCCSCCSSSSHHHHHH-HHHHH-HHCCSEEEEEEEGGGHHHHHH-------HHHHHHTTTCC
T ss_pred -------eCCcEEEEEECCCcCccccccHHHHHH-HHHHh-ccCCCEEEEEecchhHHHHHH-------HHHHHHhcCCC
Confidence 12345789999997654211 01111 11111 124788999999987543211 12222233568
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.++|.||+|+.+.........++.+.+ + ..++.+|+++++|++++.+++...
T Consensus 115 iilv~nK~Dl~~~~~~~~~~~~~~~~~---~---------------~~~~~~Sa~~~~~v~~l~~~i~~~ 166 (188)
T 2wjg_A 115 LLLALNKMDLAKSLGIEIDVDKLEKIL---G---------------VKVVPLSAAKKMGIEELKKAISIA 166 (188)
T ss_dssp EEEEEECHHHHHHTTCCCCHHHHHHHH---T---------------SCEEECBGGGTBSHHHHHHHHHHH
T ss_pred EEEEEEhhhccccccchHHHHHHHHHh---C---------------CCeEEEEecCCCCHHHHHHHHHHH
Confidence 899999999865432212233333222 1 246789999999999999888654
No 35
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.51 E-value=1.1e-14 Score=117.49 Aligned_cols=157 Identities=20% Similarity=0.174 Sum_probs=87.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
...++++|.+|+|||||+|+|+..... +...++. +++... ..+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-----~~~~~~~--t~~~~~-----------~~~~------------------ 46 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY-----IGNWPGV--TVEKKE-----------GEFE------------------ 46 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS-----CC-------CCCCCE-----------EEEE------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee-----ccCCCCc--ceeeeE-----------EEEE------------------
Confidence 456889999999999999999953110 1111221 111000 0000
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHH--HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~--~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ 189 (293)
.++..+.++||||+...... .+.+. ..++ .....+.+++|+|+.+...... +...+.+...+.
T Consensus 47 ------~~~~~l~i~Dt~G~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~v~D~~~~~~~~~-------~~~~~~~~~~p~ 111 (165)
T 2wji_A 47 ------YNGEKFKVVDLPGVYSLTANSIDEIIA-RDYI-INEKPDLVVNIVDATALERNLY-------LTLQLMEMGANL 111 (165)
T ss_dssp ------ETTEEEEEEECCCCSCSSSSSHHHHHH-HHHH-HHHCCSEEEEEEETTCHHHHHH-------HHHHHHHTTCCE
T ss_pred ------ECCcEEEEEECCCcccCCCcchhHHHH-HHHH-hcCCCCEEEEEecCCchhHhHH-------HHHHHHhcCCCE
Confidence 12235789999997653211 11110 1111 1125788999999987543211 122223346788
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
++|.||+|+...........++.+. ++ ..++.+||++|+|++++..++.+
T Consensus 112 ilv~nK~Dl~~~~~~~~~~~~~~~~---~~---------------~~~~~~SA~~~~~v~~l~~~l~~ 161 (165)
T 2wji_A 112 LLALNKMDLAKSLGIEIDVDKLEKI---LG---------------VKVVPLSAAKKMGIEELKKAISI 161 (165)
T ss_dssp EEEEECHHHHHHTTCCCCHHHHHHH---HT---------------SCEEECBGGGTBSHHHHHHHHHH
T ss_pred EEEEEchHhccccChhhHHHHHHHH---hC---------------CCEEEEEcCCCCCHHHHHHHHHH
Confidence 9999999986432211112222222 21 24678999999999999888754
No 36
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.51 E-value=9e-15 Score=136.41 Aligned_cols=167 Identities=21% Similarity=0.302 Sum_probs=96.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
..+-++++|.+|+|||||+|+|+ +...+.+...+|++.. .... .++
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~----~~~~~~~~~~~gtT~d----~~~~---------~~~----------------- 219 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAML----GEERVIVSNVAGTTRD----AVDT---------SFT----------------- 219 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH----TSTTEEEC-------------CCE---------EEE-----------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHh----CCCceeecCCCCceee----eeEE---------EEE-----------------
Confidence 45678899999999999999999 4444556666664221 1100 000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHH---HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
.++..+.|+||||+.+..... +.+.....+.....+|++++|+|+.......+.. +...+.....
T Consensus 220 -------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~-----~~~~~~~~~~ 287 (436)
T 2hjg_A 220 -------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-----IAGYAHEAGK 287 (436)
T ss_dssp -------ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTC
T ss_pred -------ECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH-----HHHHHHHcCC
Confidence 123357899999975432211 1111111122345688999999998644332211 2223334467
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 255 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l 255 (293)
+.++|+||+|+.+..+. ..+++.+.++...+. ....+++.+||++|.|++++..++
T Consensus 288 ~iiiv~NK~Dl~~~~~~--~~~~~~~~~~~~l~~----------~~~~~~~~~SA~tg~~v~~l~~~i 343 (436)
T 2hjg_A 288 AVVIVVNKWDAVDKDES--TMKEFEENIRDHFQF----------LDYAPILFMSALTKKRIHTLMPAI 343 (436)
T ss_dssp EEEEEEECGGGSCCCTT--HHHHHHHHHHHHCGG----------GTTSCEEECCTTTCTTGGGHHHHH
T ss_pred cEEEEEECccCCCcchH--HHHHHHHHHHHhccc----------CCCCCEEEEecccCCCHHHHHHHH
Confidence 89999999999875431 334455555443221 122457889999999999886554
No 37
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.51 E-value=3.5e-14 Score=118.01 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=95.3
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
..+..-|+|+|.+|+|||||+|+|+.... .....++ .+.... ..+.+.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~------~~~~~~t-~~~~~~------------~~~~~~------------- 58 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEF------VEDYEPT-KADSYR------------KKVVLD------------- 58 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCC------CTTCCTT-CCEEEE------------EEEEET-------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCC------CCCCCCc-cceEEE------------EEEEEC-------------
Confidence 34566788999999999999999995321 0111111 110000 000000
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-HHH--
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQI-- 185 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~qi-- 185 (293)
.....+.|+||||..........+. ...+.+++|+|+.......... .+...+ ...
T Consensus 59 ---------~~~~~~~l~Dt~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~ 117 (206)
T 2bov_A 59 ---------GEEVQIDILDTAGQEDYAAIRDNYF--------RSGEGFLCVFSITEMESFAATA----DFREQILRVKED 117 (206)
T ss_dssp ---------TEEEEEEEEECCCTTCCHHHHHHHH--------HHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHTTC
T ss_pred ---------CEEEEEEEEcCCChhhhHHHHHHHH--------hhCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCC
Confidence 1124578999999877655543322 3578899999998754322110 011111 111
Q ss_pred -hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 186 -AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 186 -~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
..+.++|+||+|+.+..+ ....++....+..+ ..++.+|+++|.|++++..++.+
T Consensus 118 ~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~l~~ 173 (206)
T 2bov_A 118 ENVPFLLVGNKSDLEDKRQ--VSVEEAKNRAEQWN---------------VNYVETSAKTRANVDKVFFDLMR 173 (206)
T ss_dssp SCCCEEEEEECTTCGGGCC--SCHHHHHHHHHHHT---------------CEEEEECTTTCTTHHHHHHHHHH
T ss_pred CCCCEEEEEeccCcccccc--ccHHHHHHHHHHhC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence 457899999999976543 23455555555442 13678999999999999888754
No 38
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.50 E-value=6e-15 Score=138.17 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=86.5
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
|+|+|.+|+|||||+|+|+. ...+++...+|+ +.+.... .+.
T Consensus 227 V~ivG~~nvGKSSLln~L~~----~~~a~v~~~~gt----T~d~~~~---------~i~--------------------- 268 (462)
T 3geh_A 227 VAIVGRPNVGKSSLLNAWSQ----SDRAIVTDLPGT----TRDVVES---------QLV--------------------- 268 (462)
T ss_dssp EEEEECTTSSHHHHHHHHHH----HHBSCCSCCTTC----CHHHHHH---------EEE---------------------
T ss_pred EEEEcCCCCCHHHHHHHHhC----CCcccccCCCCe----eEEEEEE---------EEE---------------------
Confidence 78899999999999999994 333444444554 2221111 000
Q ss_pred HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-hccCEEEE
Q 022736 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADVVIL 193 (293)
Q Consensus 115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-~~a~iivl 193 (293)
.++..+.|+||||+.++....+.+...........+|.+++|+|++....... ..++.++ ..+.++|+
T Consensus 269 ---~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~--------~~i~~~l~~~piivV~ 337 (462)
T 3geh_A 269 ---VGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD--------QEIYEQVKHRPLILVM 337 (462)
T ss_dssp ---ETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH--------HHHHHHHTTSCEEEEE
T ss_pred ---ECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH--------HHHHHhccCCcEEEEE
Confidence 13456889999998776555554444445556677899999999986433222 1222222 25889999
Q ss_pred eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 259 (293)
Q Consensus 194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~ 259 (293)
||+|+.+.... . .++.+. ....++.+|+++|+|++++.+++.+..
T Consensus 338 NK~Dl~~~~~~----~----~~~~~~-------------~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 338 NKIDLVEKQLI----T----SLEYPE-------------NITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp ECTTSSCGGGS----T----TCCCCT-------------TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ECCCCCcchhh----H----HHHHhc-------------cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999875421 0 000000 123578899999999999999887643
No 39
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.50 E-value=8.6e-14 Score=112.91 Aligned_cols=155 Identities=17% Similarity=0.170 Sum_probs=90.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+..-|+++|.+|+|||||+|+|+.. +.. ....++ .+.+.... .+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~----~~~-~~~~~~--~~~~~~~~-----------~~~~~--------------- 54 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN----TFS-GSYITT--IGVDFKIR-----------TVEIN--------------- 54 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC----C----CCTTT--BSEEEEEE-----------EEEET---------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC----CCC-CccCCC--ceeEEEEE-----------EEEEC---------------
Confidence 4567889999999999999999842 221 111221 11111000 00000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----- 185 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----- 185 (293)
.....+.|+||||........ ......+|.+++|+|+......... ..++.++
T Consensus 55 -------~~~~~~~i~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~-------~~~~~~~~~~~~ 112 (181)
T 3tw8_B 55 -------GEKVKLQIWDTAGQERFRTIT--------STYYRGTHGVIVVYDVTSAESFVNV-------KRWLHEINQNCD 112 (181)
T ss_dssp -------TEEEEEEEEEETTGGGCSSCC--------GGGGTTCSEEEEEEETTCHHHHHHH-------HHHHHHHHHHCT
T ss_pred -------CEEEEEEEEcCCCchhhhhhH--------HHHhccCCEEEEEEECCCHHHHHHH-------HHHHHHHHHhCC
Confidence 012457899999944322111 1223567899999999875433221 1222222
Q ss_pred hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
..+.++|+||+|+.+.... .........+..+ ..++.+|+++|.|++++..++.+
T Consensus 113 ~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 167 (181)
T 3tw8_B 113 DVCRILVGNKNDDPERKVV--ETEDAYKFAGQMG---------------IQLFETSAKENVNVEEMFNCITE 167 (181)
T ss_dssp TSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT---------------CCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchhccc--CHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHH
Confidence 2466999999998765432 2334444444332 24678999999999999888754
No 40
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.50 E-value=9.4e-14 Score=114.19 Aligned_cols=158 Identities=12% Similarity=0.143 Sum_probs=92.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
...-|+|+|.+|+|||||+|+|+...... ..... .+.+..... +..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t----~~~~~~~~~-----------~~~---------------- 66 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTP---AFVST----VGIDFKVKT-----------VYR---------------- 66 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC---SCCCC----CCCEEEEEE-----------EEE----------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC---CcCCc----eeEEEEEEE-----------EEE----------------
Confidence 45568889999999999999999642100 00001 111110000 000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~ 187 (293)
......+.|+||||......... .....+|.+++|+|+......... . .+...+.+. ..
T Consensus 67 ------~~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~ 128 (189)
T 2gf9_A 67 ------HDKRIKLQIWDTAGQERYRTITT--------AYYRGAMGFLLMYDIANQESFAAV-Q---DWATQIKTYSWDNA 128 (189)
T ss_dssp ------TTEEEEEEEEECCSCCSSCCSGG--------GGGTTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHSCTTC
T ss_pred ------CCeEEEEEEEeCCCcHHHhhhHH--------HhccCCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCC
Confidence 01234578999999654322221 222467899999999765432211 0 011222222 45
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.++|+||+|+.+..+. ..+.+.+..+.++ ..++.+|+++|.|++++..++.+
T Consensus 129 piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~l~~ 181 (189)
T 2gf9_A 129 QVILVGNKCDLEDERVV--PAEDGRRLADDLG---------------FEFFEASAKENINVKQVFERLVD 181 (189)
T ss_dssp EEEEEEECTTCGGGCCS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred CEEEEEECcccccccCC--CHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999764432 2344444444432 14678999999999999988754
No 41
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=1.2e-13 Score=112.09 Aligned_cols=109 Identities=15% Similarity=0.097 Sum_probs=64.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D 197 (293)
..+.++||||......... .....+|.+++|+|+.......... .+...+.+ ...+.++|+||+|
T Consensus 60 ~~~~~~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~piilv~nK~D 127 (180)
T 2g6b_A 60 VKLQMWDTAGQERFRSVTH--------AYYRDAHALLLLYDVTNKASFDNIQ----AWLTEIHEYAQHDVALMLLGNKVD 127 (180)
T ss_dssp EEEEEEECCCC----------------CCGGGCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTCEEEEEEECCS
T ss_pred EEEEEEeCCCcHHHHHHHH--------HHccCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCCcEEEEEECcc
Confidence 4578999999655433221 2235678999999998754322110 01112222 2356799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.+..+. ......+..+..+ ..++.+||+++.|++++..++.+.
T Consensus 128 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~ 171 (180)
T 2g6b_A 128 SAHERVV--KREDGEKLAKEYG---------------LPFMETSAKTGLNVDLAFTAIAKE 171 (180)
T ss_dssp TTSCCCS--CHHHHHHHHHHHT---------------CCEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCccccc--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9865432 2344444444332 146789999999999999888653
No 42
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.50 E-value=3.3e-14 Score=132.75 Aligned_cols=168 Identities=23% Similarity=0.239 Sum_probs=96.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
..+-++|+|++|+|||||+|+|+ +...+++.+.+|++.......+ .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~----g~~~~~v~~~~gtT~d~~~~~i-------------~----------------- 224 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAIL----NKERALVSPIPGTTRDPVDDEV-------------F----------------- 224 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH----TSTTEEECCCC------CCEEE-------------E-----------------
T ss_pred cCceEEEECCCCCCHHHHHHHHh----CCcccccCCCCCCcCCceEEEE-------------E-----------------
Confidence 45678899999999999999999 5555667777775221111000 0
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHH----HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLA----SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~----~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~ 186 (293)
.++.++.++||+|+....... +.+............+.+++++|+.......+. .....+....
T Consensus 225 -------~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-----~i~~~l~~~~ 292 (439)
T 1mky_A 225 -------IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-----RMAGLMERRG 292 (439)
T ss_dssp -------ETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-----HHHHHHHHTT
T ss_pred -------ECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-----HHHHHHHHcC
Confidence 122357899999985433222 111111112233467889999998754322211 0233444556
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
.+.++|+||+|+.+..+ ...+++.+.++..... ....+++.+||++|.|++++.+.+.
T Consensus 293 ~~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~SA~~g~gv~~l~~~i~ 350 (439)
T 1mky_A 293 RASVVVFNKWDLVVHRE--KRYDEFTKLFREKLYF----------IDYSPLIFTSADKGWNIDRMIDAMN 350 (439)
T ss_dssp CEEEEEEECGGGSTTGG--GCHHHHHHHHHHHCGG----------GTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred CCEEEEEECccCCCchh--hHHHHHHHHHHHHhcc----------CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 78999999999986432 1244454444332211 1224578899999999998876654
No 43
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.50 E-value=1.3e-13 Score=113.96 Aligned_cols=109 Identities=17% Similarity=0.088 Sum_probs=68.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.|+||||..........+ ...+|.+++|+|+.+........ .+...+.+. ..+.++|+||+|
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~--------~~~~d~iilV~D~~~~~s~~~~~----~~~~~i~~~~~~~~piilV~NK~D 142 (192)
T 2il1_A 75 IRLQIWDTAGQERFNSITSAY--------YRSAKGIILVYDITKKETFDDLP----KWMKMIDKYASEDAELLLVGNKLD 142 (192)
T ss_dssp EEEEEEEECCSGGGHHHHHHH--------HHHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCcHHHHHHHHHH--------hcCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECcc
Confidence 457899999976544443222 24678999999998755432210 012222222 356799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+. ..+......+.+. ...++.+||++|+|++++..++.+
T Consensus 143 l~~~~~v--~~~~~~~~~~~~~--------------~~~~~~~SA~~g~gi~~l~~~l~~ 186 (192)
T 2il1_A 143 CETDREI--TRQQGEKFAQQIT--------------GMRFCEASAKDNFNVDEIFLKLVD 186 (192)
T ss_dssp GGGGCCS--CHHHHHHHHHTST--------------TCEEEECBTTTTBSHHHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHhcC--------------CCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9765432 2334444443321 134678999999999999888754
No 44
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.49 E-value=3.8e-14 Score=113.38 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=67.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH-HHHHH---hccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE-AIHQI---AFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~-~~~qi---~~a~iivlNK~ 196 (293)
.++.|+||||..+.......+. ...+.+++|+|+.......... .+.. ..... ..+.++|+||+
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK~ 119 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYF--------RSGEGFLCVFSITEMESFAATA----DFREQILRVKEDENVPFLLVGNKS 119 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHH--------HHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHCCTTSCEEEEEECG
T ss_pred EEEEEEECCCcchhHHHHHHHh--------hcCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEECc
Confidence 4678999999776655443322 4578899999998654322110 0111 11211 45789999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+..+. ..+++....+..+ ..++.+|+++|.|++++..++.+
T Consensus 120 Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T 1u8z_A 120 DLEDKRQV--SVEEAKNRADQWN---------------VNYVETSAKTRANVDKVFFDLMR 163 (168)
T ss_dssp GGGGGCCS--CHHHHHHHHHHHT---------------CEEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccCcc--CHHHHHHHHHHcC---------------CeEEEeCCCCCCCHHHHHHHHHH
Confidence 99765432 3455555555432 14678999999999999988854
No 45
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=2.4e-13 Score=111.52 Aligned_cols=160 Identities=12% Similarity=0.076 Sum_probs=91.5
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+..-++++|.+|+|||||+|+|+.. +..-.....| .+...+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~----~~~~~~~t~~----~~~~~~~----------------------------- 56 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN----EVVHTSPTIG----SNVEEIV----------------------------- 56 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT----SCEEEECCSC----SSCEEEE-----------------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC----CCCcCcCCCc----cceEEEE-----------------------------
Confidence 44566888999999999999999953 2111222111 1111000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---Hh
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IA 186 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~ 186 (293)
.++..+.|+||||.......... ....+|.+++|+|+.+......... .+...... -.
T Consensus 57 --------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~ 117 (187)
T 1zj6_A 57 --------INNTRFLMWDIGGQESLRSSWNT--------YYTNTEFVIVVVDSTDRERISVTRE---ELYKMLAHEDLRK 117 (187)
T ss_dssp --------ETTEEEEEEECCC----CGGGHH--------HHTTCCEEEEEEETTCTTTHHHHHH---HHHHHHTSGGGTT
T ss_pred --------ECCEEEEEEECCCCHhHHHHHHH--------HhcCCCEEEEEEeCCCHHHHHHHHH---HHHHHHhchhhCC
Confidence 12345789999997653333221 1246889999999986422111000 01112221 24
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 259 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~ 259 (293)
.+.++|+||+|+.+.. ...++.+.++...-. ... ..++.+||++|+|++++.+++.+..
T Consensus 118 ~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~---------~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 118 AGLLIFANKQDVKECM----TVAEISQFLKLTSIK---------DHQ-WHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp CEEEEEEECTTSTTCC----CHHHHHHHHTGGGCC---------SSC-EEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCcCCC----CHHHHHHHhChhhhc---------CCC-cEEEEccCCCCcCHHHHHHHHHHHH
Confidence 5789999999998643 234555554321000 001 2578899999999999999986543
No 46
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.49 E-value=2.9e-14 Score=113.95 Aligned_cols=109 Identities=20% Similarity=0.093 Sum_probs=67.9
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D 197 (293)
..+.++||||..........+. ...+.+++|+|............ . ....... -..+.++|+||+|
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~~~-~--~~~i~~~~~~~~~piilv~nK~D 119 (167)
T 1kao_A 51 SVLEILDTAGTEQFASMRDLYI--------KNGQGFILVYSLVNQQSFQDIKP-M--RDQIIRVKRYEKVPVILVGNKVD 119 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHHH--------HHCSEEEEEEETTCHHHHHHHHH-H--HHHHHHHTTTSCCCEEEEEECGG
T ss_pred EEEEEEECCCchhhHHHHHHHh--------ccCCEEEEEEeCCCHHHHHHHHH-H--HHHHHHhcCCCCCCEEEEEECCc
Confidence 3478999999876655443322 45688999999987543211100 0 1111221 2467899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+. .........+..+ ..++.+|+++|+|++++.+++.+
T Consensus 120 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 162 (167)
T 1kao_A 120 LESEREV--SSSEGRALAEEWG---------------CPFMETSAKSKTMVDELFAEIVR 162 (167)
T ss_dssp GGGGCCS--CHHHHHHHHHHHT---------------SCEEEECTTCHHHHHHHHHHHHH
T ss_pred ccccccC--CHHHHHHHHHHhC---------------CCEEEecCCCCcCHHHHHHHHHH
Confidence 8764432 2334444444332 24678999999999999988754
No 47
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.49 E-value=9.5e-14 Score=117.97 Aligned_cols=165 Identities=12% Similarity=0.057 Sum_probs=89.0
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+.+-|+|+|.+|+|||||+|+|+ +.+.. ....++.+..+......
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~----~~~~~-~~~~~~~t~~~~~~~~~----------------------------- 72 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVS----RANVD-VQSYSFTTKNLYVGHFD----------------------------- 72 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHT----TTCEE-EECC-----CEEEEEEE-----------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh----CCCCc-cCCCCCcceeeeeeeee-----------------------------
Confidence 356778999999999999999999 44443 23333321111000000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHH----hhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLAS----VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~----~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi 185 (293)
..+..+.|+||||+.+...... ...... -....|++++|+|++........ ....++.++
T Consensus 73 --------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~-----~~~~~~~~l 136 (228)
T 2qu8_A 73 --------HKLNKYQIIDTPGLLDRAFENRNTIEMTTITA---LAHINGVILFIIDISEQCGLTIK-----EQINLFYSI 136 (228)
T ss_dssp --------ETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH---HHTSSEEEEEEEETTCTTSSCHH-----HHHHHHHHH
T ss_pred --------cCCCeEEEEECCCCcCcccchhhhHHHHHHHH---hhccccEEEEEEecccccCcchH-----HHHHHHHHH
Confidence 1234578999999854210000 000011 12345789999999764211000 011222222
Q ss_pred -----hccCEEEEeCCCCCCCCCCcchHH-HHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 186 -----AFADVVILNKVDLVSPERSGDSLD-ELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 186 -----~~a~iivlNK~D~~~~~~~~~~~~-~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
..+.++|+||+|+.+..+...... .+....+..++ ...++.+||++|+|++++..++.+
T Consensus 137 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~SA~~g~gi~~l~~~l~~ 201 (228)
T 2qu8_A 137 KSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN-------------PIKFSSFSTLTGVGVEQAKITACE 201 (228)
T ss_dssp HTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS-------------CEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC-------------CceEEEEecccCCCHHHHHHHHHH
Confidence 467899999999987544311111 22222222211 135688999999999999888754
No 48
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=113.90 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=92.7
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+..-|+++|.+|+|||||+|+|+... ... .....+.+.....+ .
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~----~~~--~~~~~t~~~~~~~~-------------~---------------- 63 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN----AQS--QNILPTIGFSIEKF-------------K---------------- 63 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG----GCC--SSCCCCSSEEEEEE-------------E----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC----CCC--CCcCCccceeEEEE-------------E----------------
Confidence 345568899999999999999998532 000 00111111111000 0
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-----
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----- 184 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----- 184 (293)
.++..+.|+||||.......... ....+|.+++|+|+........... .+......
T Consensus 64 --------~~~~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~ 124 (190)
T 2h57_A 64 --------SSSLSFTVFDMSGQGRYRNLWEH--------YYKEGQAIIFVIDSSDRLRMVVAKE---ELDTLLNHPDIKH 124 (190)
T ss_dssp --------CSSCEEEEEEECCSTTTGGGGGG--------GGGGCSEEEEEEETTCHHHHHHHHH---HHHHHHHSTTTTT
T ss_pred --------ECCEEEEEEECCCCHHHHHHHHH--------HHhcCCEEEEEEECCCHHHHHHHHH---HHHHHHhChhhcc
Confidence 12356889999997654433321 2256789999999987532211100 01112221
Q ss_pred HhccCEEEEeCCCCCCCCCCcchHHHHHHHHH--hhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIH--EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~--~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
-..+.++|+||+|+.+.. ..+++.+.++ .+... ...++.+||++|.|++++.+++.+.
T Consensus 125 ~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 184 (190)
T 2h57_A 125 RRIPILFFANKMDLRDAV----TSVKVSQLLCLENIKDK------------PWHICASDAIKGEGLQEGVDWLQDQ 184 (190)
T ss_dssp SCCCEEEEEECTTSTTCC----CHHHHHHHHTGGGCCSS------------CEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CCCeEEEEEeCcCcccCC----CHHHHHHHhChhhccCC------------ceEEEEccCCCCcCHHHHHHHHHHH
Confidence 245789999999998653 2355555553 11110 1257889999999999999988653
No 49
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.49 E-value=2.6e-14 Score=124.00 Aligned_cols=170 Identities=16% Similarity=0.100 Sum_probs=92.7
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+..-|+|+|.+|||||||+|+|+. .+..+....++. ++...... . |
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~----~~~~~~~~~~~~---~t~~~~~~-----------------~-~-------- 66 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR----KQAFESKLGSQT---LTKTCSKS-----------------Q-G-------- 66 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT----SCCSCCCTTSCC---CCCSCEEE-----------------E-E--------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC----CCCcccCCCCCc---eeeeeEEE-----------------E-E--------
Confidence 3456788999999999999999994 332222222220 11100000 0 0
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHH----HHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAP----LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~----~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi 185 (293)
...+.++.||||||+.+... +.+.+ ..........+|++++|+|+..+...... +...+.++
T Consensus 67 -------~~~~~~i~iiDTpG~~~~~~~~~~~~~~i-~~~~~~~~~~~d~il~V~d~~~~~~~~~~------~~~~l~~~ 132 (260)
T 2xtp_A 67 -------SWGNREIVIIDTPDMFSWKDHCEALYKEV-QRCYLLSAPGPHVLLLVTQLGRYTSQDQQ------AAQRVKEI 132 (260)
T ss_dssp -------EETTEEEEEEECCGGGGSSCCCHHHHHHH-HHHHHHHTTCCSEEEEEEETTCCCHHHHH------HHHHHHHH
T ss_pred -------EeCCCEEEEEECcCCCCCCCCHHHHHHHH-HHHHHhcCCCCcEEEEEEeCCCCCHHHHH------HHHHHHHH
Confidence 01335689999999765421 11111 11112233568999999999863222111 12233333
Q ss_pred -----hccCEEEEe-CCCCCCCCCCcchH-----HHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhh
Q 022736 186 -----AFADVVILN-KVDLVSPERSGDSL-----DELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGL 254 (293)
Q Consensus 186 -----~~a~iivlN-K~D~~~~~~~~~~~-----~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~ 254 (293)
..+.++++| |+|+.+.. ....+ ..+...++.+..... .+.. +++||+++.|++++..+
T Consensus 133 ~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~SA~~~~gv~~l~~~ 201 (260)
T 2xtp_A 133 FGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRIC---------AFNN-RAEGSNQDDQVKELMDC 201 (260)
T ss_dssp HCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEE---------ECCT-TCCHHHHHHHHHHHHHH
T ss_pred hCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEE---------EecC-cccccccHHHHHHHHHH
Confidence 457888888 99998532 10000 123334554432110 0122 78999999999999888
Q ss_pred hhh
Q 022736 255 LEE 257 (293)
Q Consensus 255 l~~ 257 (293)
+.+
T Consensus 202 i~~ 204 (260)
T 2xtp_A 202 IED 204 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 50
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.49 E-value=1.3e-13 Score=114.52 Aligned_cols=108 Identities=15% Similarity=0.097 Sum_probs=67.6
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D 197 (293)
..+.|+||||.......... ....+|.+++|+|+......... . .+...+.. -..+.++|+||+|
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~piilv~nK~D 124 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTA--------YYRGAMGFILMYDITNEESFNAV-Q---DWSTQIKTYSWDNAQVLLVGNKCD 124 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHT--------TGGGCSEEEEEEETTCHHHHHHH-H---HHHHHHHHHSCSSCEEEEEEECTT
T ss_pred EEEEEEECCCchhhcchHHH--------hhcCCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhcCCCCCEEEEEECcc
Confidence 45789999998655443322 22467899999999865432111 0 01112222 1356899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+.... ..+.+....+.++ ..++.+||++|.|++++..++.+
T Consensus 125 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 167 (203)
T 1zbd_A 125 MEDERVV--SSERGRQLADHLG---------------FEFFEASAKDNINVKQTFERLVD 167 (203)
T ss_dssp CTTSCCS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSSHHHHHHHHH
T ss_pred cCccccc--CHHHHHHHHHHCC---------------CeEEEEECCCCCCHHHHHHHHHH
Confidence 9765432 3344444444432 14678999999999988887753
No 51
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.49 E-value=4.6e-14 Score=115.16 Aligned_cols=109 Identities=14% Similarity=0.125 Sum_probs=70.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.|+||||..+.......+. ...|.+++|+|+.......... .. +....... ..+.++|+||+|
T Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~-~~--~~~i~~~~~~~~~piilv~nK~D 134 (187)
T 2a9k_A 66 VQIDILDTAGQEDYAAIRDNYF--------RSGEGFLCVFSITEMESFAATA-DF--REQILRVKEDENVPFLLVGNKSD 134 (187)
T ss_dssp EEEEEEECCCTTCCHHHHHHHH--------HHCSEEEEEEETTCHHHHHHHH-HH--HHHHHHHHCCTTCCEEEEEECGG
T ss_pred EEEEEEECCCCcccHHHHHHHh--------ccCCEEEEEEECcCHHHHHHHH-HH--HHHHHHhcCCCCCCEEEEEECcc
Confidence 4578999999877655543322 4578899999998654322110 00 11111221 457899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+ ....++.+..+..+ ..++.+|+++++|++++..++.+
T Consensus 135 l~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 177 (187)
T 2a9k_A 135 LEDKRQ--VSVEEAKNRAEQWN---------------VNYVETSAKTRANVDKVFFDLMR 177 (187)
T ss_dssp GGGGCC--SCHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccCc--cCHHHHHHHHHHcC---------------CeEEEeCCCCCCCHHHHHHHHHH
Confidence 976433 23455555555432 24678999999999999988854
No 52
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.49 E-value=9.7e-15 Score=131.75 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=93.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
++-|+|+|++|||||||+|+|+.. +.. +.+.+.++.......+ .+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~----~~~-i~~~~ftTl~p~~g~v-------------~~----------------- 202 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSA----KPK-IADYHFTTLVPNLGMV-------------ET----------------- 202 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEE----CCE-ESSTTSSCCCCCEEEE-------------EC-----------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcC----CCc-cccCCccccCceEEEE-------------Ee-----------------
Confidence 456899999999999999999853 222 2344433221111111 00
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccch-----HHHHhhhcccCCchHHHHH--
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-----LFQIDKYRHLSSYPEAIHQ-- 184 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~-----~~~~~~~~~~~~~~~~~~q-- 184 (293)
.+...++|+||||+.+.......+ ...++....+++.+++|+|++.. ...... +...+.+
T Consensus 203 ------~~~~~~~l~DtPG~i~~a~~~~~l-~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~------~~~eL~~~~ 269 (342)
T 1lnz_A 203 ------DDGRSFVMADLPGLIEGAHQGVGL-GHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLT------INQELSEYN 269 (342)
T ss_dssp ------SSSCEEEEEEHHHHHHHTTCTTTT-HHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHH------HHHHHHHSC
T ss_pred ------CCCceEEEecCCCCcccccccchh-HHHHHHHHHhccEEEEEEECCcccccChHHHHHH------HHHHHHHhh
Confidence 112468999999964321111111 12234455678999999999652 222111 1112221
Q ss_pred ---HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 185 ---IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 185 ---i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
...|.++|+||+|+.+.. +.+....+.++.. ..++.+||++++|+++|..++.+.
T Consensus 270 ~~l~~~p~ilV~NK~Dl~~~~------e~~~~l~~~l~~~-------------~~v~~iSA~tg~gi~eL~~~l~~~ 327 (342)
T 1lnz_A 270 LRLTERPQIIVANKMDMPEAA------ENLEAFKEKLTDD-------------YPVFPISAVTREGLRELLFEVANQ 327 (342)
T ss_dssp SSTTTSCBCBEEECTTSTTHH------HHHHHHHHHCCSC-------------CCBCCCSSCCSSTTHHHHHHHHHH
T ss_pred hhhcCCCEEEEEECccCCCCH------HHHHHHHHHhhcC-------------CCEEEEECCCCcCHHHHHHHHHHH
Confidence 356789999999998642 2233333333211 357899999999999999888653
No 53
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.49 E-value=3.5e-13 Score=109.11 Aligned_cols=109 Identities=15% Similarity=0.082 Sum_probs=67.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-------HhccCEEEE
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-------IAFADVVIL 193 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-------i~~a~iivl 193 (293)
..+.|+||||..........+ ....+.+++|+|........... .+...+.. ...+.++|+
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~p~i~v~ 123 (177)
T 1wms_A 56 VTMQIWDTAGQERFRSLRTPF--------YRGSDCCLLTFSVDDSQSFQNLS----NWKKEFIYYADVKEPESFPFVILG 123 (177)
T ss_dssp EEEEEEECCCCGGGHHHHGGG--------GTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHTCSCTTTSCEEEEE
T ss_pred EEEEEEeCCCchhhhhhHHHH--------HhcCCEEEEEEECcCHHHHHHHH----HHHHHHHHHccccccCCCcEEEEE
Confidence 457899999976554443222 24578899999998764322110 01111111 234789999
Q ss_pred eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
||+|+.+.+ ...+.+.+..+... ...++.+|+++|.|++++..++.+.
T Consensus 124 nK~Dl~~~~---~~~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 171 (177)
T 1wms_A 124 NKIDISERQ---VSTEEAQAWCRDNG--------------DYPYFETSAKDATNVAAAFEEAVRR 171 (177)
T ss_dssp ECTTCSSCS---SCHHHHHHHHHHTT--------------CCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ECCcccccc---cCHHHHHHHHHhcC--------------CceEEEEeCCCCCCHHHHHHHHHHH
Confidence 999997433 23445555444221 1347889999999999998887543
No 54
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.48 E-value=4.6e-15 Score=139.58 Aligned_cols=157 Identities=23% Similarity=0.304 Sum_probs=97.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
.-|+|+|.+|+|||||+|+|+. .+.+++...+|++....... +.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~----~~~a~vs~~~gTT~d~~~~~-------------i~------------------- 287 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLN----EDRAIVTDIPGTTRDVISEE-------------IV------------------- 287 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHH----HTBCCCCCSSCCSSCSCCEE-------------EE-------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHC----CCCCccCCCCCeeeeeEEEE-------------Ee-------------------
Confidence 4588999999999999999994 33455666666532211111 11
Q ss_pred HHHhhcCCCCEEEEecCCCC-CcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-hccCE
Q 022736 113 QLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADV 190 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~-~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-~~a~i 190 (293)
.++..+.|+||||+. ++....+.+.....+.....+|.+++|+|++......+. +.+..+ ..+.+
T Consensus 288 -----~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~--------~il~~l~~~pii 354 (482)
T 1xzp_A 288 -----IRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR--------KILERIKNKRYL 354 (482)
T ss_dssp -----ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH--------HHHHHHTTSSEE
T ss_pred -----cCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH--------HHHHHhcCCCEE
Confidence 123458899999987 554332222112223444678999999998754322111 111222 46789
Q ss_pred EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+|+||+|+.+.. ..+++.+... . ..+++.+||++|+|++++..++.+.
T Consensus 355 vV~NK~DL~~~~----~~~~~~~~~~---~-------------~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 355 VVINKVDVVEKI----NEEEIKNKLG---T-------------DRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp EEEEECSSCCCC----CHHHHHHHHT---C-------------STTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred EEEECccccccc----CHHHHHHHhc---C-------------CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 999999997542 2233333211 0 0246889999999999999888653
No 55
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.48 E-value=4.7e-14 Score=114.93 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=90.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+.+-|+++|.+|+|||||+|+|+.... ......+ .+.+... .+...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~------~~~~~~t-~~~~~~~------------~~~~~--------------- 50 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF------VDSYDPT-IENTFTK------------LITVN--------------- 50 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC------CSCCCTT-CCEEEEE------------EEEET---------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC------CCCCCCC-ccccEEE------------EEEEC---------------
Confidence 456788999999999999999995321 0111111 1111000 00000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~ 187 (293)
.....+.|+||||......... .....+|.+++|+|............ . +..... ....
T Consensus 51 -------~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~ 112 (181)
T 3t5g_A 51 -------GQEYHLQLVDTAGQDEYSIFPQ--------TYSIDINGYILVYSVTSIKSFEVIKV-I--HGKLLDMVGKVQI 112 (181)
T ss_dssp -------TEEEEEEEEECCCCCTTCCCCG--------GGTTTCSEEEEEEETTCHHHHHHHHH-H--HHHHHHHC----C
T ss_pred -------CEEEEEEEEeCCCchhhhHHHH--------HHHhcCCEEEEEEECCCHHHHHHHHH-H--HHHHHHhcCCCCC
Confidence 1124568999999765322211 12245789999999987543221100 0 111111 1246
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.++|+||+|+.+..+ ...+......+..+ ..++.+||++|.|++++..++.+
T Consensus 113 p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~ 165 (181)
T 3t5g_A 113 PIMLVGNKKDLHMERV--ISYEEGKALAESWN---------------AAFLESSAKENQTAVDVFRRIIL 165 (181)
T ss_dssp CEEEEEECTTCTTTCC--SCHHHHHHHHHHTT---------------CEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEEECccchhcce--ecHHHHHHHHHHhC---------------CcEEEEecCCCCCHHHHHHHHHH
Confidence 7899999999976543 23455555555442 24678999999999999888754
No 56
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.48 E-value=3.9e-13 Score=110.71 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=91.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
...-|+|+|.+|+|||||+|+|+...... ...++ .+.+.... .+.+.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~~--~~~~~~~~-----------~~~~~--------------- 61 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-----SYIST--IGVDFKIR-----------TIELD--------------- 61 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-----CCCCC--SSEEEEEE-----------EEEET---------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-----CCCCc--ccceEEEE-----------EEEEC---------------
Confidence 45568899999999999999999642110 11111 11111000 00000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~ 187 (293)
.....+.|+||||.......... ....+|.+++|+|+.+........ .+...+.+. ..
T Consensus 62 -------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~ 122 (196)
T 3tkl_A 62 -------GKTIKLQIWDTAGQERFRTITSS--------YYRGAHGIIVVYDVTDQESFNNVK----QWLQEIDRYASENV 122 (196)
T ss_dssp -------TEEEEEEEEEECCSGGGCTTHHH--------HHTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTC
T ss_pred -------CEEEEEEEEECCCcHhhhhhHHH--------HHhhCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCC
Confidence 11245789999996543322221 124578999999998754322110 011222222 45
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.++|+||+|+.+.... .........+.++ ..++.+||++|.|++++..++.+
T Consensus 123 p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gv~~l~~~l~~ 175 (196)
T 3tkl_A 123 NKLLVGNKCDLTTKKVV--DYTTAKEFADSLG---------------IPFLETSAKNATNVEQSFMTMAA 175 (196)
T ss_dssp EEEEEEECTTCTTTCCS--CHHHHHHHHHHTT---------------CCEEEECTTTCTTHHHHHHHHHH
T ss_pred CEEEEEECccccccccc--CHHHHHHHHHHcC---------------CcEEEEeCCCCCCHHHHHHHHHH
Confidence 78999999999876542 3334444444332 24678999999999998888754
No 57
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.48 E-value=4.1e-13 Score=107.84 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=64.4
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D 197 (293)
..+.|+||||..+....... ....+|.+++|+|+.......... .+...+.+ -..+.++|+||+|
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~piilv~nK~D 122 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGPI--------YYRDSNGAILVYDITDEDSFQKVK----NWVKELRKMLGNEICLCIVGNKID 122 (170)
T ss_dssp EEEEEEECCCC-------CC--------SSTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHGGGSEEEEEEECGG
T ss_pred EEEEEEECCCcHhhhhhHHH--------HhccCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCeEEEEEECcc
Confidence 35789999996544332211 224678999999998754322110 01112222 2356799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+. ..+...+..+..+ ..++.+||++|.|++++..++.+
T Consensus 123 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1z08_A 123 LEKERHV--SIQEAESYAESVG---------------AKHYHTSAKQNKGIEELFLDLCK 165 (170)
T ss_dssp GGGGCCS--CHHHHHHHHHHTT---------------CEEEEEBTTTTBSHHHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC---------------CeEEEecCCCCCCHHHHHHHHHH
Confidence 9765432 3445555554432 23578999999999999988754
No 58
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.48 E-value=1.8e-13 Score=109.59 Aligned_cols=105 Identities=12% Similarity=0.124 Sum_probs=66.5
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK 195 (293)
.++.|+||||..+...... .....+|.+++|+|+........ ...++.++ ..+.++|+||
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~piilv~nK 118 (168)
T 1z2a_A 54 VRLMLWDTAGQEEFDAITK--------AYYRGAQACVLVFSTTDRESFEA-------ISSWREKVVAEVGDIPTALVQNK 118 (168)
T ss_dssp EEEEEECCTTGGGTTCCCH--------HHHTTCCEEEEEEETTCHHHHHT-------HHHHHHHHHHHHCSCCEEEEEEC
T ss_pred EEEEEEcCCCcHhHHHHHH--------HHhcCCCEEEEEEECcCHHHHHH-------HHHHHHHHHHhCCCCCEEEEEEC
Confidence 4678999999543222111 11246789999999987543221 11222222 4678999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+.+..+. ..+.+.+..+..+ ..++.+|++++.|++++..++.+
T Consensus 119 ~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~ 163 (168)
T 1z2a_A 119 IDLLDDSCI--KNEEAEGLAKRLK---------------LRFYRTSVKEDLNVSEVFKYLAE 163 (168)
T ss_dssp GGGGGGCSS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSSHHHHHHHHH
T ss_pred cccCccccc--CHHHHHHHHHHcC---------------CeEEEEecCCCCCHHHHHHHHHH
Confidence 999764331 2344555444432 24678999999999999988754
No 59
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.48 E-value=1e-13 Score=110.94 Aligned_cols=109 Identities=14% Similarity=0.046 Sum_probs=68.4
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~ 196 (293)
..+.++||||..........+. ...+.+++|+|..+........ .+...+.+. ..+.++|+||+
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK~ 118 (167)
T 1c1y_A 51 CMLEILDTAGTEQFTAMRDLYM--------KNGQGFALVYSITAQSTFNDLQ----DLREQILRVKDTEDVPMILVGNKC 118 (167)
T ss_dssp EEEEEEEECSSCSSTTHHHHHH--------HHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHCCSCCCEEEEEECT
T ss_pred EEEEEEECCChHHHHHHHHHHh--------ccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhhCcCCCcEEEEEECc
Confidence 4578999999766544443222 3578899999998654322110 011112221 45779999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+..+. ..+.+....+.+. . ..++.+||++|.|++++..++.+
T Consensus 119 Dl~~~~~~--~~~~~~~~~~~~~-~-------------~~~~~~Sa~~~~gi~~l~~~l~~ 163 (167)
T 1c1y_A 119 DLEDERVV--GKEQGQNLARQWC-N-------------CAFLESSAKSKINVNEIFYDLVR 163 (167)
T ss_dssp TCGGGCCS--CHHHHHHHHHHTT-S-------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccccccC--CHHHHHHHHHHcc-C-------------CcEEEecCCCCCCHHHHHHHHHH
Confidence 99765432 3344554444331 1 34688999999999999988854
No 60
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.48 E-value=2.5e-13 Score=125.33 Aligned_cols=112 Identities=20% Similarity=0.183 Sum_probs=69.9
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHHHHhc-cCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D 197 (293)
..+.|+||||..+..... ......+|.+++|+|+.... .+... +...+.++.. +.++++||+|
T Consensus 75 ~~~~iiDtPGh~~~~~~~--------~~~~~~~D~~ilVvda~~~~~~~qt~~------~~~~~~~~~~~~iivviNK~D 140 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATM--------LSGAALMDGAILVVAANEPFPQPQTRE------HFVALGIIGVKNLIIVQNKVD 140 (403)
T ss_dssp EEEEEEECCCCGGGHHHH--------HHHHTTCSEEEEEEETTSCSSCHHHHH------HHHHHHHHTCCCEEEEEECGG
T ss_pred ceEEEEECCCcHHHHHHH--------HHHHhhCCEEEEEEECCCCCCcHHHHH------HHHHHHHcCCCCEEEEEECcc
Confidence 468899999965432222 23335689999999998642 11111 2334444443 6789999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.+.++.....+++.+.++.... ...+++++||++|+|+++|.+++.+.
T Consensus 141 l~~~~~~~~~~~~i~~~l~~~~~------------~~~~ii~vSA~~g~gi~~L~~~l~~~ 189 (403)
T 3sjy_A 141 VVSKEEALSQYRQIKQFTKGTWA------------ENVPIIPVSALHKINIDSLIEGIEEY 189 (403)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSTT------------TTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhhCC------------CCCEEEEEECCCCcChHHHHHHHHHh
Confidence 98764221122233333322211 12468899999999999999998764
No 61
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.48 E-value=9.4e-14 Score=113.49 Aligned_cols=158 Identities=12% Similarity=0.077 Sum_probs=91.4
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+..-++++|.+|+|||||+|+|+.. +........|. +...+.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~----~~~~~~~t~~~----~~~~~~----------------------------- 61 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN----EVVHTSPTIGS----NVEEIV----------------------------- 61 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT----SCEEEECCSSS----SCEEEE-----------------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC----CCCccCCcCce----eeEEEE-----------------------------
Confidence 34556889999999999999999953 22333333331 110000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHh
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIA 186 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~ 186 (293)
..+..+.|+||||......... .....+|.+++|+|+.+......... .+..... ...
T Consensus 62 --------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~D~~~~~s~~~~~~---~~~~~~~~~~~~~ 122 (181)
T 2h17_A 62 --------INNTRFLMWDIGGQESLRSSWN--------TYYTNTEFVIVVVDSTDRERISVTRE---ELYKMLAHEDLRK 122 (181)
T ss_dssp --------ETTEEEEEEEESSSGGGTCGGG--------GGGTTCCEEEEEEETTCTTTHHHHHH---HHHHHHTCGGGTT
T ss_pred --------ECCEEEEEEECCCCHhHHHHHH--------HHhccCCEEEEEEECCCHHHHHHHHH---HHHHHHhChhhCC
Confidence 1234678999999754322221 12246789999999986422111000 0111221 134
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+.++|+||+|+.+.. ...++.+.+....-. ... ..++.+||++|+|++++..++.+
T Consensus 123 ~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~---------~~~-~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 123 AGLLIFANKQDVKECM----TVAEISQFLKLTSIK---------DHQ-WHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp CEEEEEEECTTSTTCC----CHHHHHHHTTGGGCC---------SSC-EEEEECBTTTTBTHHHHHHHHHT
T ss_pred CeEEEEEECCCcccCC----CHHHHHHHhCccccc---------CCc-eEEEEccCCCCcCHHHHHHHHHh
Confidence 5679999999997643 234444443211100 001 25788999999999999988753
No 62
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.48 E-value=9.3e-14 Score=111.53 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=65.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.++||||.......... .....|.+++|+|+.......... .+...+.+. ..+.++|.||+|
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~l~~~~~~~~~iilv~nK~D 122 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPM--------YYRGSAAAIIVYDITKEETFSTLK----NWVRELRQHGPPSIVVAIAGNKCD 122 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTSEEEEEEECTT
T ss_pred EEEEEEcCCCchhhhcccHh--------hCcCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhCCCCCcEEEEEECCc
Confidence 45789999997543322221 124578899999998754322110 012222222 234677889999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.+..+. ..+......+..+ ..++.+|++++.|++++..++.+.
T Consensus 123 l~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~i~~~ 166 (170)
T 1z0j_A 123 LTDVREV--MERDAKDYADSIH---------------AIFVETSAKNAININELFIEISRR 166 (170)
T ss_dssp CGGGCCS--CHHHHHHHHHHTT---------------CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC---------------CEEEEEeCCCCcCHHHHHHHHHHH
Confidence 9865432 2333443333322 246789999999999999888643
No 63
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.47 E-value=4.9e-13 Score=108.60 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=67.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.|+||||.......... ....+|.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 61 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~p~i~v~nK~D 128 (181)
T 2efe_B 61 VKFEIWDTAGQERYHSLAPM--------YYRGAAAAIIVFDVTNQASFERAK----KWVQELQAQGNPNMVMALAGNKSD 128 (181)
T ss_dssp EEEEEEECCCSGGGGGGTHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCCChhhhhhhHH--------HhccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECCc
Confidence 45789999996543222211 124578999999998654321110 012222222 345789999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.+..+. ..+++....+..+ ..++.+|+++|+|++++..++.+.
T Consensus 129 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~l~~~ 172 (181)
T 2efe_B 129 LLDARKV--TAEDAQTYAQENG---------------LFFMETSAKTATNVKEIFYEIARR 172 (181)
T ss_dssp CTTTCCS--CHHHHHHHHHHTT---------------CEEEECCSSSCTTHHHHHHHHHHT
T ss_pred ccccccC--CHHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHHHH
Confidence 9765432 3445555554332 146789999999999999988654
No 64
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.47 E-value=1.4e-13 Score=111.44 Aligned_cols=158 Identities=18% Similarity=0.108 Sum_probs=92.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+..-++++|.+|+|||||+|+|+..... .....+ .+.+.... .+.+.
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~t-~~~~~~~~-----------~~~~~--------------- 60 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFM------ADCPHT-IGVEFGTR-----------IIEVS--------------- 60 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC------SSCTTS-CCCCEEEE-----------EEEET---------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC------CCCCCc-cceEEEEE-----------EEEEC---------------
Confidence 4566889999999999999999953210 000111 11111000 00000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---Hhc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~ 187 (293)
.....+.|+||||..........+ ...+|.+++|+|+.......... .+...+.+ ...
T Consensus 61 -------~~~~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~ 121 (179)
T 1z0f_A 61 -------GQKIKLQIWDTAGQERFRAVTRSY--------YRGAAGALMVYDITRRSTYNHLS----SWLTDARNLTNPNT 121 (179)
T ss_dssp -------TEEEEEEEEECTTGGGTCHHHHHH--------HHTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTC
T ss_pred -------CeEEEEEEEECCCChHhhhhHHHH--------hccCCEEEEEEeCcCHHHHHHHH----HHHHHHHHhcCCCC
Confidence 122457899999965433333221 24678899999998764432110 01111222 234
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.++|+||+|+.+..+ ...+++++..+..+ ..++.+|+++|+|++++..++.+
T Consensus 122 piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 174 (179)
T 1z0f_A 122 VIILIGNKADLEAQRD--VTYEEAKQFAEENG---------------LLFLEASAKTGENVEDAFLEAAK 174 (179)
T ss_dssp EEEEEEECTTCGGGCC--SCHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHHH
T ss_pred cEEEEEECcccccccc--cCHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 5799999999975433 23455555555432 24678999999999999888754
No 65
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.47 E-value=4.4e-13 Score=107.73 Aligned_cols=158 Identities=18% Similarity=0.115 Sum_probs=91.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+..-++++|.+|+|||||+|+|+..... ...+. .+.....+.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~------~~~~t--~~~~~~~~~------------------------------ 47 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV------TTIPT--IGFNVETVT------------------------------ 47 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC------CCCCC--SSEEEEEEE------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC------CcCCc--CccceEEEE------------------------------
Confidence 3456888999999999999999853211 11111 111110000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---Hhc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~ 187 (293)
.....+.++||||......... .....+|.+++|+|+........... .+...... ...
T Consensus 48 -------~~~~~~~~~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~ 109 (171)
T 1upt_A 48 -------YKNLKFQVWDLGGLTSIRPYWR--------CYYSNTDAVIYVVDSCDRDRIGISKS---ELVAMLEEEELRKA 109 (171)
T ss_dssp -------ETTEEEEEEEECCCGGGGGGGG--------GGCTTCSEEEEEEETTCCTTHHHHHH---HHHHHHTCGGGTTC
T ss_pred -------ECCEEEEEEECCCChhhhHHHH--------HHhccCCEEEEEEECCCHHHHHHHHH---HHHHHHhchhhCCC
Confidence 1234578999999765333221 12246899999999976422111000 01112111 245
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.++|+||+|+.+... ..++...+...... ... ..++.+|+++|+|++++..++.+.
T Consensus 110 piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---------~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (171)
T 1upt_A 110 ILVVFANKQDMEQAMT----SSEMANSLGLPALK---------DRK-WQIFKTSATKGTGLDEAMEWLVET 166 (171)
T ss_dssp EEEEEEECTTSTTCCC----HHHHHHHHTGGGCT---------TSC-EEEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCCCC----HHHHHHHhCchhcc---------CCc-eEEEECcCCCCcCHHHHHHHHHHH
Confidence 7899999999987542 34455444321110 011 257889999999999999888653
No 66
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.47 E-value=1.1e-13 Score=111.06 Aligned_cols=110 Identities=17% Similarity=0.121 Sum_probs=65.2
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D 197 (293)
..+.++||||.......... ....+|.+++|+|+.+........ .+...+.+ -..+.++|+||+|
T Consensus 52 ~~~~~~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~piilv~nK~D 119 (170)
T 1ek0_A 52 VKFEIWDTAGQERFASLAPX--------YYRNAQAALVVYDVTKPQSFIKAR----HWVKELHEQASKDIIIALVGNKID 119 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEECCCChhhhhhhhh--------hhccCcEEEEEEecCChHHHHHHH----HHHHHHHHhcCCCCcEEEEEECCC
Confidence 45789999996543332221 124678999999998754332210 01111111 1456789999999
Q ss_pred CCCCCCC-cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERS-GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~-~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+.... ...........+..+ ..++.+||++|.|++++..++.+
T Consensus 120 l~~~~~~~~v~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 120 XLQEGGERKVAREEGEKLAEEKG---------------LLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp GGGSSCCCCSCHHHHHHHHHHHT---------------CEEEECCTTTCTTHHHHHHHHHT
T ss_pred ccccccccCCCHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 9765211 112233333333221 24688999999999999988864
No 67
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.47 E-value=6.9e-13 Score=107.58 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=61.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-HH------HhccCEEEE
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQ------IAFADVVIL 193 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~q------i~~a~iivl 193 (293)
..+.|+||||......... .....+|.+++|+|+.......... .+...+ .. ...+.++|+
T Consensus 58 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~p~ilv~ 125 (182)
T 1ky3_A 58 ATMQVWDTAGQERFQSLGV--------AFYRGADCCVLVYDVTNASSFENIK----SWRDEFLVHANVNSPETFPFVILG 125 (182)
T ss_dssp EEEEEECCC------------------CCSTTCCEEEEEEETTCHHHHHTHH----HHHHHHHHHHCCSCTTTCCEEEEE
T ss_pred EEEEEEECCCChHhhhhhH--------HHhhcCCEEEEEEECCChHHHHHHH----HHHHHHHHHhcccCcCCCcEEEEE
Confidence 4578999999654333221 1224678999999998764322110 011111 11 234789999
Q ss_pred eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
||+|+.+..+. .....+....+... ...++.+|+++|+|++++..++.+
T Consensus 126 nK~Dl~~~~~~-v~~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (182)
T 1ky3_A 126 NKIDAEESKKI-VSEKSAQELAKSLG--------------DIPLFLTSAKNAINVDTAFEEIAR 174 (182)
T ss_dssp ECTTSCGGGCC-SCHHHHHHHHHHTT--------------SCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred ECCcccccccc-CCHHHHHHHHHhcC--------------CCeEEEEecCCCCCHHHHHHHHHH
Confidence 99999654321 12334443333221 134688999999999999888754
No 68
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.47 E-value=1.4e-13 Score=115.33 Aligned_cols=175 Identities=18% Similarity=0.211 Sum_probs=89.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+..-++++|.+|+|||||+++|+..... ...+. ...+...+ .+.+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~------~~~~~--~~~~~~~~-------------~~~~-------------- 50 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR------DTQTS--ITDSSAIY-------------KVNN-------------- 50 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC------CBCCC--CSCEEEEE-------------ECSS--------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc------cccCC--cceeeEEE-------------EecC--------------
Confidence 4567889999999999999999964210 11111 11110000 0000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHH-HHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-----
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----- 184 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~-~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----- 184 (293)
.....+.|+||||...... +...+ ...++++++|+|+.+.......... .+...+..
T Consensus 51 -------~~~~~~~i~Dt~G~~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~ 113 (214)
T 2fh5_B 51 -------NRGNSLTLIDLPGHESLRFQLLDRF--------KSSARAVVFVVDSAAFQREVKDVAE--FLYQVLIDSMALK 113 (214)
T ss_dssp -------TTCCEEEEEECCCCHHHHHHHHHHH--------GGGEEEEEEEEETTTHHHHHHHHHH--HHHHHHHHHHTST
T ss_pred -------CCccEEEEEECCCChhHHHHHHHHH--------HhhCCEEEEEEECCCcCHHHHHHHH--HHHHHHhhhhhcc
Confidence 1145688999999764433 22221 2467889999999875432221100 01111111
Q ss_pred HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc--CCCEEE--------EeecC----CCC------chhhcccccCC
Q 022736 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN--SLAHVI--------RSVRC----QVD------LSEVLNCRAYD 244 (293)
Q Consensus 185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln--p~a~i~--------~~~~~----~~~------~~~i~~~sa~~ 244 (293)
...|.++|+||+|+.+..........+.+.+..+. +...+- +...+ .+. ...++.+||++
T Consensus 114 ~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~ 193 (214)
T 2fh5_B 114 NSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKG 193 (214)
T ss_dssp TCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-
T ss_pred cCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccC
Confidence 13578999999999876543223333333333111 100000 00000 001 23477899999
Q ss_pred c------chhhhhhhhhhh
Q 022736 245 A------THVTRLEGLLEE 257 (293)
Q Consensus 245 ~------~~~~~l~~~l~~ 257 (293)
| .|++++..|+.+
T Consensus 194 g~~~~~~~gv~~lf~~l~~ 212 (214)
T 2fh5_B 194 GRGDTGSADIQDLEKWLAK 212 (214)
T ss_dssp ------CCBCHHHHHHHHH
T ss_pred CCccccccChHHHHHHHHH
Confidence 9 999998888754
No 69
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.47 E-value=3.1e-13 Score=112.13 Aligned_cols=161 Identities=16% Similarity=0.111 Sum_probs=89.0
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+..-|+|+|.+|+|||||+|+|+..... .......| .+.... .+.+.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~----~~~~~~-----------~~~~~-------------- 73 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFR---ENISATLG----VDFQMK-----------TLIVD-------------- 73 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC-----------------CEEE-----------EEEET--------------
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCC---ccCCCCcc----ceeEEE-----------EEEEC--------------
Confidence 34556888999999999999999964211 01111111 110000 00000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---h
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---A 186 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~ 186 (293)
.....+.|+||||..........+ ...+|.+++|+|+.......... .+...+.+. .
T Consensus 74 --------~~~~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~iilv~d~~~~~s~~~~~----~~~~~i~~~~~~~ 133 (199)
T 2p5s_A 74 --------GERTVLQLWDTAGQERFRSIAKSY--------FRKADGVLLLYDVTCEKSFLNIR----EWVDMIEDAAHET 133 (199)
T ss_dssp --------TEEEEEEEEECTTCTTCHHHHHHH--------HHHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHC---
T ss_pred --------CEEEEEEEEECCCCcchhhhHHHH--------HhhCCEEEEEEECCChHHHHHHH----HHHHHHHHhcCCC
Confidence 122457899999977655444322 24578999999998654432210 012222222 4
Q ss_pred ccCEEEEeCCCCCCC----CCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 187 FADVVILNKVDLVSP----ERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 187 ~a~iivlNK~D~~~~----~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+.++|+||+|+.+. ..+........+..+..+ ..++.+||++|.|++++..++.+
T Consensus 134 ~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~---------------~~~~~~SA~~g~gv~el~~~l~~ 193 (199)
T 2p5s_A 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG---------------ALFCETSAKDGSNIVEAVLHLAR 193 (199)
T ss_dssp CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT---------------CEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCEEEEEECcccccccccccccccCHHHHHHHHHHcC---------------CeEEEeeCCCCCCHHHHHHHHHH
Confidence 678999999998631 001012233333333322 24678999999999999888754
No 70
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.47 E-value=1.1e-13 Score=110.97 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=65.6
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.++||||.......... ....+|.+++|+|+.......... .+...+.+. ..+.++|.||+|
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~iilv~nK~D 122 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPM--------YYRGAQAAIVVYDITNEESFARAK----NWVKELQRQASPNIVIALSGNKAD 122 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCcHHhhhhhHH--------hccCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECcc
Confidence 45789999996543322221 224678999999998754322110 011122222 335677779999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.+..+. ...+.....+..+ ..++.+||++|+|++++..++.+.
T Consensus 123 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~i~~~ 166 (170)
T 1r2q_A 123 LANKRAV--DFQEAQSYADDNS---------------LLFMETSAKTSMNVNEIFMAIAKK 166 (170)
T ss_dssp GGGGCCS--CHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHHHT
T ss_pred Ccccccc--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9764332 3344444443321 246789999999999999988653
No 71
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.47 E-value=2.3e-13 Score=109.30 Aligned_cols=110 Identities=11% Similarity=-0.004 Sum_probs=63.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.++||||.......... .. ....|.+++|+|............ .+....... ..|.++|.||+|
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~----~~---~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~p~ilv~nK~D 120 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQD----HC---LQTGDAFLIVFSVTDRRSFSKVPE---TLLRLRAGRPHHDLPVILVGNKSD 120 (169)
T ss_dssp EEEEEECCCCC--------C----HH---HHHCSEEEEEEETTCHHHHHTHHH---HHHHHHHHSTTSCCCEEEEEECTT
T ss_pred EEEEEEECCCccccchhhhh----hh---hccCCEEEEEEECCChHHHHHHHH---HHHHHHhcccCCCCCEEEEeeCcc
Confidence 45789999998654332211 11 134788999999987543221100 011111111 457899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+. ..+...+..+..+ ..++.+||++|+|++++..++.+
T Consensus 121 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~ 163 (169)
T 3q85_A 121 LARSREV--SLEEGRHLAGTLS---------------CKHIETSAALHHNTRELFEGAVR 163 (169)
T ss_dssp CGGGCCS--CHHHHHHHHHHTT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred hhhcccC--CHHHHHHHHHHcC---------------CcEEEecCccCCCHHHHHHHHHH
Confidence 9754432 3444444444432 24578999999999999888754
No 72
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.47 E-value=4.8e-13 Score=110.18 Aligned_cols=105 Identities=15% Similarity=0.098 Sum_probs=66.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEe
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN 194 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlN 194 (293)
..+.|+||||..........+ ...+|.+++|+|+........ ...++..+ ..+.++|+|
T Consensus 74 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~vi~v~D~~~~~s~~~-------~~~~l~~i~~~~~~~~piilv~n 138 (193)
T 2oil_A 74 VKAQIWDTAGLERYRAITSAY--------YRGAVGALLVFDLTKHQTYAV-------VERWLKELYDHAEATIVVMLVGN 138 (193)
T ss_dssp EEEEEEEESCCCTTCTTHHHH--------HTTCCEEEEEEETTCHHHHHT-------HHHHHHHHHTTSCTTCEEEEEEE
T ss_pred EEEEEEeCCCchhhhhhhHHH--------hccCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhcCCCCeEEEEEE
Confidence 457899999976543333222 246788999999987543221 11222222 456799999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+|+.+..+. .....+...+..+ ..++.+||++|+|++++..++.+
T Consensus 139 K~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 184 (193)
T 2oil_A 139 KSDLSQAREV--PTEEARMFAENNG---------------LLFLETSALDSTNVELAFETVLK 184 (193)
T ss_dssp CGGGGGGCCS--CHHHHHHHHHHTT---------------CEEEEECTTTCTTHHHHHHHHHH
T ss_pred CCCccccccc--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 9999764332 3344444444321 24678999999999999888754
No 73
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.47 E-value=1.6e-13 Score=112.27 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=92.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+..-++++|.+|+|||||+++|... .........|. ....+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~----~~~~~~~t~g~----~~~~~~------------------------------ 56 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE----DISHITPTQGF----NIKSVQ------------------------------ 56 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS----CCEEEEEETTE----EEEEEE------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC----CCCcccCcCCe----EEEEEE------------------------------
Confidence 4567889999999999999999943 33333333331 110000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---Hhc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~ 187 (293)
.++..+.++||||........... ...+|++++|+|+........... .+...+.. -..
T Consensus 57 -------~~~~~l~i~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~ 118 (181)
T 1fzq_A 57 -------SQGFKLNVWDIGGQRKIRPYWRSY--------FENTDILIYVIDSADRKRFEETGQ---ELTELLEEEKLSCV 118 (181)
T ss_dssp -------ETTEEEEEEECSSCGGGHHHHHHH--------HTTCSEEEEEEETTCGGGHHHHHH---HHHHHTTCGGGTTC
T ss_pred -------ECCEEEEEEECCCCHHHHHHHHHH--------hCCCCEEEEEEECcCHHHHHHHHH---HHHHHHhChhhcCC
Confidence 123457899999976544333221 246789999999976432111000 01111111 245
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|.++|.||+|+.+... .+++.+.+....-. . ....++.+||++|+|++++..|+.+.
T Consensus 119 piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~-------~---~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (181)
T 1fzq_A 119 PVLIFANKQDLLTAAP----ASEIAEGLNLHTIR-------D---RVWQIQSCSALTGEGVQDGMNWVCKN 175 (181)
T ss_dssp CEEEEEECTTSTTCCC----HHHHHHHTTGGGCC-------S---SCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CEEEEEECcCcccCCC----HHHHHHHhCchhcc-------C---CceEEEEccCCCCCCHHHHHHHHHHH
Confidence 7899999999986542 24444433211000 0 01257889999999999999998653
No 74
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.46 E-value=1.6e-13 Score=110.07 Aligned_cols=108 Identities=14% Similarity=0.096 Sum_probs=65.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.|+||||........ ......+|.+++|+|+......... . .+...+.+. ..+.++|+||+|
T Consensus 52 ~~~~l~D~~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~piilv~nK~D 119 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTIT--------TAYYRGAMGIILVYDITDERTFTNI-K---QWFKTVNEHANDEAQLLLVGNKSD 119 (170)
T ss_dssp EEEEEECCTTGGGTSCCC--------HHHHTTEEEEEEEEETTCHHHHHTH-H---HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCCChhhhhhH--------HHHhccCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCcEEEEEECcc
Confidence 457899999954322111 1122467889999999875432111 0 012222222 457799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.+... ..+...+..+..+ ..++.+|+++|+|++++..++.+.
T Consensus 120 l~~~~~---~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~l~~~ 162 (170)
T 1g16_A 120 METRVV---TADQGEALAKELG---------------IPFIESSAKNDDNVNEIFFTLAKL 162 (170)
T ss_dssp CTTCCS---CHHHHHHHHHHHT---------------CCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCcCcc---CHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHHH
Confidence 954331 2344444444332 146889999999999998887643
No 75
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.46 E-value=1e-13 Score=112.40 Aligned_cols=162 Identities=19% Similarity=0.114 Sum_probs=92.2
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
..+.+.|+++|.+|+|||||+|+|+..... ....++. ..+.... .+.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-----~~~~~~~--~~~~~~~-----------~~~--------------- 51 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVT-----EQEAGGI--TQHIGAY-----------QVT--------------- 51 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSS-----CSSCCSS--STTCCCC-----------EEE---------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccc-----cCCCCce--eEeeeEE-----------EEE---------------
Confidence 345778999999999999999999953210 0011111 1000000 000
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
.++..+.++||||........ ......+|.+++|+|+.......... ..........+
T Consensus 52 ---------~~~~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~~~~~~~-----~l~~~~~~~~p 109 (178)
T 2lkc_A 52 ---------VNDKKITFLDTPGHEAFTTMR--------ARGAQVTDIVILVVAADDGVMPQTVE-----AINHAKAANVP 109 (178)
T ss_dssp ---------ETTEEEEESCCCSSSSSSCSC--------CSSCCCCCEEEEEEETTCCCCHHHHH-----HHHHHGGGSCC
T ss_pred ---------eCCceEEEEECCCCHHHHHHH--------HHHHhhCCEEEEEEECCCCCcHHHHH-----HHHHHHhCCCC
Confidence 123457799999965432111 12335678899999987532111100 11122233567
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCC-chhhcccccCCcchhhhhhhhhhh
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVD-LSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~-~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.++|+||+|+.+.. ..++...++.....+ .... ...++.+||++|+|++++..++..
T Consensus 110 ~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 167 (178)
T 2lkc_A 110 IIVAINKMDKPEAN-----PDRVMQELMEYNLVP-------EEWGGDTIFCKLSAKTKEGLDHLLEMILL 167 (178)
T ss_dssp EEEEEETTTSSCSC-----HHHHHHHHTTTTCCB-------TTTTSSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEEECccCCcCC-----HHHHHHHHHhcCcCh-------hHcCCcccEEEEecCCCCCHHHHHHHHHH
Confidence 89999999998643 234444444332111 0010 135789999999999999988854
No 76
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=2.5e-13 Score=109.12 Aligned_cols=109 Identities=16% Similarity=0.053 Sum_probs=68.6
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK 195 (293)
..+.++||||..+......... ...|.+++|+|+.+........ .+...+.+. ..+.++|+||
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~pii~v~nK 118 (172)
T 2erx_A 51 CTLQITDTTGSHQFPAMQRLSI--------SKGHAFILVYSITSRQSLEELK----PIYEQICEIKGDVESIPIMLVGNK 118 (172)
T ss_dssp EEEEEEECCSCSSCHHHHHHHH--------HHCSEEEEEEETTCHHHHHTTH----HHHHHHHHHHC---CCCEEEEEEC
T ss_pred EEEEEEECCCchhhHHHHHHhc--------ccCCEEEEEEECcCHHHHHHHH----HHHHHHHHHhCCCCCCCEEEEEEc
Confidence 4578999999877655443322 3578899999998654321110 011222222 3578999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+|+.+..+. .........+..+ ..++.+|+++|.|++++..++.+.
T Consensus 119 ~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (172)
T 2erx_A 119 CDESPSREV--QSSEAEALARTWK---------------CAFMETSAKLNHNVKELFQELLNL 164 (172)
T ss_dssp GGGGGGCCS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSHHHHHHHHHHT
T ss_pred ccccccccc--CHHHHHHHHHHhC---------------CeEEEecCCCCcCHHHHHHHHHHH
Confidence 999765432 2233333333221 246789999999999999998654
No 77
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.46 E-value=5.6e-13 Score=110.99 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=68.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D 197 (293)
..+.|+||||..........+ ...+|++++|+|+.+....... . .+...+.+ ...+.++|+||+|
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~iilv~D~~~~~s~~~~-~---~~~~~i~~~~~~~~piilv~NK~D 145 (201)
T 2hup_A 78 VKLQIWDTAGQERFRTITQSY--------YRSANGAILAYDITKRSSFLSV-P---HWIEDVRKYAGSNIVQLLIGNKSD 145 (201)
T ss_dssp EEEEEECCTTCGGGHHHHHHH--------HTTCSEEEEEEETTBHHHHHTH-H---HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEECCCcHhHHHHHHHH--------HhhCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCCEEEEEECCc
Confidence 457899999976554443322 2467899999999875432211 0 01112222 1356799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+ ...+++.+..+..+ ...++.+||++++|++++..++.+
T Consensus 146 l~~~~~--v~~~~~~~~~~~~~--------------~~~~~~~SA~~g~gi~~l~~~l~~ 189 (201)
T 2hup_A 146 LSELRE--VSLAEAQSLAEHYD--------------ILCAIETSAKDSSNVEEAFLRVAT 189 (201)
T ss_dssp CGGGCC--SCHHHHHHHHHHTT--------------CSEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccccc--cCHHHHHHHHHHcC--------------CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 976432 23445555554432 125688999999999999988754
No 78
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.46 E-value=1.8e-12 Score=106.14 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=68.6
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~ 196 (293)
..+.|+||||.......... ....+|++++|+|+.......... .+...+.+ ...+.++|+||+
T Consensus 70 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK~ 137 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRSLTTA--------FFRDAMGFLLLFDLTNEQSFLNVR----NWISQLQMHAYSENPDIVLCGNKS 137 (195)
T ss_dssp EEEEEEEECCSGGGHHHHHH--------TTTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSSSSSCCEEEEEECT
T ss_pred EEEEEEeCCCcHHHHHHHHH--------HHcCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCCEEEEEECc
Confidence 46889999998654443322 224688999999998754432210 01111111 245789999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+..+. ..+.+.+..+..+ ..++.+|++++.|++++..++.+
T Consensus 138 Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~ 181 (195)
T 3bc1_A 138 DLEDQRAV--KEEEARELAEKYG---------------IPYFETSAANGTNISHAIEMLLD 181 (195)
T ss_dssp TCGGGCCS--CHHHHHHHHHHHT---------------CCEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccccc--CHHHHHHHHHHcC---------------CCEEEEECCCCCCHHHHHHHHHH
Confidence 99764332 3344554444432 14678999999999999888754
No 79
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.46 E-value=5.1e-13 Score=109.86 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=69.5
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK 195 (293)
..+.|+||||..........+ ...+|++++|+|+......... ..+.....++.++ ..|.++|.||
T Consensus 74 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~D~~~~~~~~~~-~s~~~l~~~l~~~~~~~~~~piilv~NK 144 (198)
T 3t1o_A 74 TRFHLYTVPGQVFYNASRKLI--------LRGVDGIVFVADSAPNRLRANA-ESMRNMRENLAEYGLTLDDVPIVIQVNK 144 (198)
T ss_dssp EEEEEEECCSCCSCSHHHHHH--------TTTCCEEEEEEECCGGGHHHHH-HHHHHHHHHHHHTTCCTTSSCEEEEEEC
T ss_pred eEEEEEeCCChHHHHHHHHHH--------HhcCCEEEEEEECCcchhhHhH-HHHHHHHHHHHhhccccCCCCEEEEEEc
Confidence 457899999977654444322 2467899999999843211110 0000012233332 4578999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+.+.. ..+++++.++..+ ...++.+||++|+|++++..++.+
T Consensus 145 ~Dl~~~~----~~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gv~~l~~~l~~ 188 (198)
T 3t1o_A 145 RDLPDAL----PVEMVRAVVDPEG--------------KFPVLEAVATEGKGVFETLKEVSR 188 (198)
T ss_dssp TTSTTCC----CHHHHHHHHCTTC--------------CSCEEECBGGGTBTHHHHHHHHHH
T ss_pred hhccccc----CHHHHHHHHHhcC--------------CceEEEEecCCCcCHHHHHHHHHH
Confidence 9997653 3455665554322 125788999999999999888754
No 80
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.46 E-value=9.1e-14 Score=110.76 Aligned_cols=107 Identities=16% Similarity=0.082 Sum_probs=67.9
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~ 196 (293)
.++.++||||..+.......+. ...|.+++++|+.......... .+...+.+. ..+.++|+||+
T Consensus 51 ~~~~~~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~p~iiv~nK~ 118 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSAMRDQYM--------RTGEGFLCVFAINNTKSFEDIH----QYREQIKRVKDSDDVPMVLVGNKS 118 (166)
T ss_dssp EEEEEEECCCCSSCCHHHHHHH--------HHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHTCSCCCEEEEEECT
T ss_pred EEEEEEECCCchhhhHHHHHhh--------ccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEEch
Confidence 4578999999776544443222 3578899999997654322110 011122221 46789999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+... ....+.+..+..+ ..++.+|+++|.|++++..++.+
T Consensus 119 Dl~~~~~---~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 161 (166)
T 2ce2_X 119 DLAARTV---ESRQAQDLARSYG---------------IPYIETSAKTRQGVEDAFYTLVR 161 (166)
T ss_dssp TCSCCCS---CHHHHHHHHHHHT---------------CCEEEECTTTCTTHHHHHHHHHH
T ss_pred hhhhccc---CHHHHHHHHHHcC---------------CeEEEecCCCCCCHHHHHHHHHH
Confidence 9987432 2344444444332 14678999999999999988864
No 81
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.45 E-value=7.3e-13 Score=110.13 Aligned_cols=158 Identities=21% Similarity=0.179 Sum_probs=89.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+..-|+|+|.+|+|||||+|+|+..... .....+.+.+..... +.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~-----------~~~~--------------- 53 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-------NQYKATIGADFLTKE-----------VMVD--------------- 53 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-------SSCCCCCSEEEEEEE-----------EESS---------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-------CCCCCcccceEEEEE-----------EEEC---------------
Confidence 3456888999999999999999964211 000000111111000 0000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCch-HHHHH-----
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP-EAIHQ----- 184 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~-~~~~q----- 184 (293)
.....+.|+||||........ ......+|++|+|+|+.......... .+. .....
T Consensus 54 -------~~~~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~ 114 (207)
T 1vg8_A 54 -------DRLVTMQIWDTAGQERFQSLG--------VAFYRGADCCVLVFDVTAPNTFKTLD----SWRDEFLIQASPRD 114 (207)
T ss_dssp -------SCEEEEEEEEECSSGGGSCSC--------CGGGTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHCCSS
T ss_pred -------CEEEEEEEEeCCCcHHHHHhH--------HHHHhCCcEEEEEEECCCHHHHHHHH----HHHHHHHHhccccc
Confidence 122457899999954322111 12224678999999998754322110 011 11111
Q ss_pred -HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 185 -IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 185 -i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
-..+.++|+||+|+.+... ..+.+....+... ...++.+||++|.|++++..++.+
T Consensus 115 ~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--------------~~~~~~~Sa~~g~gi~~l~~~l~~ 171 (207)
T 1vg8_A 115 PENFPFVVLGNKIDLENRQV---ATKRAQAWCYSKN--------------NIPYFETSAKEAINVEQAFQTIAR 171 (207)
T ss_dssp GGGSCEEEEEECTTSSCCCS---CHHHHHHHHHHTT--------------SCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCccccc---CHHHHHHHHHhcC--------------CceEEEEeCCCCCCHHHHHHHHHH
Confidence 2457899999999984332 2344444333211 134688999999999999888754
No 82
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.45 E-value=8.2e-13 Score=108.98 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=66.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCch-HHHHHHhccCEEEEeCCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP-EAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~-~~~~qi~~a~iivlNK~D~~ 199 (293)
..+.|+||||.......... ....+|.+++|+|+.......... .+. ........+.++|+||+| .
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~D~~~~~s~~~~~----~~~~~i~~~~~~piilv~NK~D-~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPL--------YYRGATCAIVVFDISNSNTLDRAK----TWVNQLKISSNYIIILVANKID-K 159 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCCEEEEEEECTT-C
T ss_pred eEEEEEECCCcHHHHHHHHH--------HhcCCCEEEEEEECCCHHHHHHHH----HHHHHHHhhCCCcEEEEEECCC-c
Confidence 57899999995433222211 124678999999998764332210 011 111212357899999999 3
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
...+ ...+++.+.++..+ ..++.+||++|.|++++..++.+
T Consensus 160 ~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~ 200 (208)
T 3clv_A 160 NKFQ--VDILEVQKYAQDNN---------------LLFIQTSAKTGTNIKNIFYMLAE 200 (208)
T ss_dssp C-CC--SCHHHHHHHHHHTT---------------CEEEEECTTTCTTHHHHHHHHHH
T ss_pred cccc--CCHHHHHHHHHHcC---------------CcEEEEecCCCCCHHHHHHHHHH
Confidence 3222 24566666666532 24678999999999999888754
No 83
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.45 E-value=5.1e-14 Score=116.29 Aligned_cols=164 Identities=16% Similarity=0.132 Sum_probs=91.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+..-++++|.+|+|||||++++.... ....... .+.+...+ .
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~----~~~~~~t----~~~~~~~~-------------~----------------- 63 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDR----LATLQPT----WHPTSEEL-------------A----------------- 63 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSC----CCCCCCC----CSCEEEEE-------------E-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC----CCccccC----CCCCeEEE-------------E-----------------
Confidence 34467899999999999999999532 1111111 11111000 0
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~ 187 (293)
.++.++.++||||.......... ....+|.+++|+|+........... .+..... .-..
T Consensus 64 -------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~ 125 (190)
T 1m2o_B 64 -------IGNIKFTTFDLGGHIQARRLWKD--------YFPEVNGIVFLVDAADPERFDEARV---ELDALFNIAELKDV 125 (190)
T ss_dssp -------ETTEEEEEEECCCSGGGTTSGGG--------GCTTCCEEEEEEETTCGGGHHHHHH---HHHHHHTCGGGTTC
T ss_pred -------ECCEEEEEEECCCCHHHHHHHHH--------HHhcCCEEEEEEECCChHHHHHHHH---HHHHHHcchhhcCC
Confidence 12245789999997653322211 1246789999999986532211100 0111111 1245
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|.++|.||+|+.+.. ..+++.+.++.......-. . .......++.+||++|+|++++.+++.+
T Consensus 126 piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 126 PFVILGNKIDAPNAV----SEAELRSALGLLNTTGSQR--I-EGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CEEEEEECTTSTTCC----CHHHHHHHTTCSSCCC-----C-CSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred CEEEEEECCCCcCCC----CHHHHHHHhCCcccccccc--c-cccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 789999999997632 3455555544322000000 0 0111235789999999999999988854
No 84
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.45 E-value=1.1e-13 Score=113.29 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=90.6
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+..-++++|.+|+|||||+|+++.. + ......+.+.....+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~----~----~~~~~~t~~~~~~~~~----------------------------- 58 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE----D----VDTISPTLGFNIKTLE----------------------------- 58 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC----C----CSSCCCCSSEEEEEEE-----------------------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC----C----CCcccccCccceEEEE-----------------------------
Confidence 34556888999999999999999943 2 0111111111110000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---Hh
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IA 186 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~ 186 (293)
.++..+.++||||..+..... ......+|.+++|+|+.+......... .+...... ..
T Consensus 59 --------~~~~~~~~~Dt~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~ 119 (186)
T 1ksh_A 59 --------HRGFKLNIWDVGGQKSLRSYW--------RNYFESTDGLIWVVDSADRQRMQDCQR---ELQSLLVEERLAG 119 (186)
T ss_dssp --------ETTEEEEEEEECCSHHHHTTG--------GGGCTTCSEEEEEEETTCGGGHHHHHH---HHHHHHTCGGGTT
T ss_pred --------ECCEEEEEEECCCCHhHHHHH--------HHHhcCCCEEEEEEECcCHHHHHHHHH---HHHHHHhChhcCC
Confidence 123457899999974322221 122356889999999976532211000 01112111 24
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.+.++|+||+|+.+.. ...++.+.+...... . ....++.+||++|+|++++..++.+.
T Consensus 120 ~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~---------~-~~~~~~~~Sa~~~~gi~~l~~~l~~~ 177 (186)
T 1ksh_A 120 ATLLIFANKQDLPGAL----SCNAIQEALELDSIR---------S-HHWRIQGCSAVTGEDLLPGIDWLLDD 177 (186)
T ss_dssp CEEEEEEECTTSTTCC----CHHHHHHHTTGGGCC---------S-SCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CcEEEEEeCccCCCCC----CHHHHHHHhChhhcc---------C-CceEEEEeeCCCCCCHHHHHHHHHHH
Confidence 5789999999998754 234444443211000 0 01257889999999999999888653
No 85
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.45 E-value=5.8e-13 Score=107.73 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=67.0
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.|+||||.......... ....+|.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 63 ~~~~~~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~piilv~nK~D 130 (179)
T 2y8e_A 63 VRLQLWDTAGQERFRSLIPS--------YIRDSTVAVVVYDITNTNSFHQTS----KWIDDVRTERGSDVIIMLVGNKTD 130 (179)
T ss_dssp EEEEEEEECCSGGGGGGSHH--------HHHTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHTTSSEEEEEEECGG
T ss_pred EEEEEEECCCcHHHHHHHHH--------HhcCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECCc
Confidence 35789999996544332221 124678899999997654321110 011111111 345799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.+..+. .........+..+ ..++.+|+++|.|++++..++.+.
T Consensus 131 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~~ 174 (179)
T 2y8e_A 131 LSDKRQV--STEEGERKAKELN---------------VMFIETSAKAGYNVKQLFRRVAAA 174 (179)
T ss_dssp GGGGCCS--CHHHHHHHHHHHT---------------CEEEEEBTTTTBSHHHHHHHHHHT
T ss_pred ccccCcC--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9765432 3344444444432 246789999999999999888653
No 86
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.45 E-value=8.8e-14 Score=115.68 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=90.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+..-|+|+|.+|+|||||+|+|+..... .....+ .+.+.... ..+
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~------~~~~~t-~~~~~~~~------------~~~---------------- 67 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS------EGYDPT-VENTYSKI------------VTL---------------- 67 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC------SCCCCC-SEEEEEEE------------EC-----------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC------CCCCCc-cceEEEEE------------EEE----------------
Confidence 4556889999999999999999964211 000010 11110000 000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----- 185 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----- 185 (293)
......+.|+||||......... .....+|++++|+|+......... ..++..+
T Consensus 68 ------~~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~-------~~~~~~i~~~~~ 126 (201)
T 3oes_A 68 ------GKDEFHLHLVDTAGQDEYSILPY--------SFIIGVHGYVLVYSVTSLHSFQVI-------ESLYQKLHEGHG 126 (201)
T ss_dssp ---------CEEEEEEEECCCCTTCCCCG--------GGTTTCCEEEEEEETTCHHHHHHH-------HHHHHHHHC---
T ss_pred ------CCEEEEEEEEECCCccchHHHHH--------HHHhcCCEEEEEEeCCCHHHHHHH-------HHHHHHHHHhcC
Confidence 01235578999999654322221 122467899999999865432211 1122221
Q ss_pred --hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 186 --AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 186 --~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
..+.++|+||+|+.+..+. .........+..+ ..++.+||++|.|++++..++.+
T Consensus 127 ~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~ 183 (201)
T 3oes_A 127 KTRVPVVLVGNKADLSPEREV--QAVEGKKLAESWG---------------ATFMESSARENQLTQGIFTKVIQ 183 (201)
T ss_dssp --CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT---------------CEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECccCcccccc--CHHHHHHHHHHhC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence 4578999999999865432 3334444444332 24678999999999999888754
No 87
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.45 E-value=1.3e-13 Score=115.07 Aligned_cols=184 Identities=17% Similarity=0.196 Sum_probs=93.9
Q ss_pred eEEEccccccccCcccC---CCCceeEEEEEecCCCcHHHHHHHHHccCCCCe-EEEEEcCCCCccccchhhhhcCCCCc
Q 022736 11 AVRIDETTHEFSNSHEN---DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGA 86 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~---~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~-vavv~~d~g~~~~~d~~~~~~~~~~~ 86 (293)
.+++.++++.|+. ..+ .-.+-..++++|++|||||||+|+|+ +.. .+.+....|.+.... .
T Consensus 3 ~l~~~~~~~~~~~-~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~----g~~~~~~~~~~~G~~~~~~--~-------- 67 (210)
T 1pui_A 3 NLNYQQTHFVMSA-PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLT----NQKSLARTSKTPGRTQLIN--L-------- 67 (210)
T ss_dssp --------CEEEE-SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTC----CC-------------CCEE--E--------
T ss_pred chhhhhhhheeec-CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHh----CCCccccccCCCccceeeE--E--------
Confidence 4678888887753 222 33345679999999999999999998 433 333444455311000 0
Q ss_pred chhhhhhccCcceeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcH------HHHHhhhcchhhccccccccEEEEE
Q 022736 87 LVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA------PLASVLWLDDQLESAVRLDSIITVV 160 (293)
Q Consensus 87 ~~~~~~~l~~gcicc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~------~~~~~~~~~~~~~~~~~~d~vi~vv 160 (293)
.. ..+ .+.++||||+.... ...... ...+++....++.+++++
T Consensus 68 -----~~------------------------~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~ 116 (210)
T 1pui_A 68 -----FE------------------------VAD-GKRLVDLPGYGYAEVPEEMKRKWQRA-LGEYLEKRQSLQGLVVLM 116 (210)
T ss_dssp -----EE------------------------EET-TEEEEECCCCC------CCHHHHHHH-HHHHHHHCTTEEEEEEEE
T ss_pred -----EE------------------------ecC-CEEEEECcCCcccccCHHHHHHHHHH-HHHHHHhhhcccEEEEEE
Confidence 00 011 46799999975421 111111 112233334567889999
Q ss_pred cccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhccc
Q 022736 161 DAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240 (293)
Q Consensus 161 Da~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~ 240 (293)
|........+.. ...++.....+.+++.||+|+.+..++......+++.++.... ....+++
T Consensus 117 d~~~~~~~~~~~-----~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 178 (210)
T 1pui_A 117 DIRHPLKDLDQQ-----MIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG-------------DVQVETF 178 (210)
T ss_dssp ETTSCCCHHHHH-----HHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS-------------CEEEEEC
T ss_pred ECCCCCchhHHH-----HHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC-------------CCceEEE
Confidence 987543221110 2233444566778889999998753210112333444432211 1235789
Q ss_pred ccCCcchhhhhhhhhhhh
Q 022736 241 RAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 241 sa~~~~~~~~l~~~l~~~ 258 (293)
|++++.+++++.+++.+.
T Consensus 179 Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp BTTTTBSHHHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHH
Confidence 999999999999988764
No 88
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.45 E-value=6.6e-14 Score=114.49 Aligned_cols=106 Identities=17% Similarity=0.079 Sum_probs=64.0
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKVD 197 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~D 197 (293)
.+.|+||||......+...+ ....+.+++|+|........... .+...+.+ -..+.++|+||+|
T Consensus 53 ~~~i~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~p~i~v~nK~D 120 (189)
T 4dsu_A 53 LLDILDTAGQEEYSAMRDQY--------MRTGEGFLCVFAINNTKSFEDIH----HYREQIKRVKDSEDVPMVLVGNKCD 120 (189)
T ss_dssp EEEEEECCCC---CTTHHHH--------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred EEEEEECCCcHHHHHHHHHH--------HhcCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEECcc
Confidence 46689999966543333222 13578899999998654322110 01111222 1357899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+... ..+.+....+..+ ..++.+||++|.|++++..++.+
T Consensus 121 l~~~~~---~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~l~~ 162 (189)
T 4dsu_A 121 LPSRTV---DTKQAQDLARSYG---------------IPFIETSAKTRQGVDDAFYTLVR 162 (189)
T ss_dssp SSSCSS---CHHHHHHHHHHHT---------------CCEEECCTTTCTTHHHHHHHHHH
T ss_pred Cccccc---CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence 986542 2344444444432 24678999999999999888754
No 89
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.45 E-value=1.1e-13 Score=113.75 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=90.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+..-|+|+|.+|+|||||+|+|+..... .....+.+.+...+.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~------------------------------ 63 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-------EDMIPTVGFNMRKIT------------------------------ 63 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-------CSCCCCCSEEEEEEE------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-------CccCCCCceeEEEEE------------------------------
Confidence 3445778999999999999999953211 000111111111010
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---Hhc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~ 187 (293)
..+..+.|+||||..+....... ....+|++++|+|+........... .+...... ...
T Consensus 64 -------~~~~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~D~~~~~s~~~~~~---~~~~~~~~~~~~~~ 125 (188)
T 1zd9_A 64 -------KGNVTIKLWDIGGQPRFRSMWER--------YCRGVSAIVYMVDAADQEKIEASKN---ELHNLLDKPQLQGI 125 (188)
T ss_dssp -------ETTEEEEEEEECCSHHHHTTHHH--------HHTTCSEEEEEEETTCGGGHHHHHH---HHHHHHTCGGGTTC
T ss_pred -------eCCEEEEEEECCCCHhHHHHHHH--------HHccCCEEEEEEECCCHHHHHHHHH---HHHHHHhCcccCCC
Confidence 12356789999996533222211 1246789999999976432211100 01112221 245
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.++|+||+|+.+... ..++...+...... .....++.+||++|.|++++..++.+.
T Consensus 126 piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~SA~~g~gv~~l~~~l~~~ 182 (188)
T 1zd9_A 126 PVLVLGNKRDLPGALD----EKELIEKMNLSAIQ----------DREICCYSISCKEKDNIDITLQWLIQH 182 (188)
T ss_dssp CEEEEEECTTSTTCCC----HHHHHHHTTGGGCC----------SSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CEEEEEECCCCccCCC----HHHHHHHhChhhhc----------cCCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999986532 23444333211100 011346889999999999999988654
No 90
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.45 E-value=1.2e-12 Score=109.04 Aligned_cols=108 Identities=16% Similarity=0.093 Sum_probs=65.9
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.|+||||........ ......+|.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 57 ~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~vilv~d~~~~~s~~~~~----~~~~~i~~~~~~~~piilv~nK~D 124 (206)
T 2bcg_Y 57 VKLQIWDTAGQERFRTIT--------SSYYRGSHGIIIVYDVTDQESFNGVK----MWLQEIDRYATSTVLKLLVGNKCD 124 (206)
T ss_dssp EEEEEECCTTTTTTTCCC--------GGGGTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCChHHHHHHH--------HHhccCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCCEEEEEECCC
Confidence 457899999965432222 12224678999999998754322210 011122221 246799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+. ..+......+..+ ..++.+||++|+|++++..++.+
T Consensus 125 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~l~~ 167 (206)
T 2bcg_Y 125 LKDKRVV--EYDVAKEFADANK---------------MPFLETSALDSTNVEDAFLTMAR 167 (206)
T ss_dssp CTTTCCS--CHHHHHHHHHHTT---------------CCEEECCTTTCTTHHHHHHHHHH
T ss_pred Ccccccc--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence 9865432 2334444433321 24678999999999999887754
No 91
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.45 E-value=3.5e-13 Score=111.03 Aligned_cols=108 Identities=18% Similarity=0.028 Sum_probs=65.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.|+||||........ ......+|++++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 70 ~~~~i~Dt~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~----~~l~~i~~~~~~~~piilv~nK~D 137 (191)
T 2a5j_A 70 IKLQIWDTAGQESFRSIT--------RSYYRGAAGALLVYDITRRETFNHLT----SWLEDARQHSSSNMVIMLIGNKSD 137 (191)
T ss_dssp EEEEEECCTTGGGTSCCC--------HHHHTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEECCCchhhhhhH--------HHHhccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCEEEEEECcc
Confidence 457899999954322111 11224678999999998754322110 011122221 456799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+. ..+......+..+ ..++.+||++++|++++..++.+
T Consensus 138 l~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 180 (191)
T 2a5j_A 138 LESRRDV--KREEGEAFAREHG---------------LIFMETSAKTACNVEEAFINTAK 180 (191)
T ss_dssp CGGGCCS--CHHHHHHHHHHHT---------------CEEEEECTTTCTTHHHHHHHHHH
T ss_pred cCCcccc--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 9764332 2344444444332 14678999999999999888754
No 92
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.45 E-value=9e-14 Score=113.33 Aligned_cols=158 Identities=17% Similarity=0.119 Sum_probs=88.6
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+..-++++|.+|+|||||+|+++ +.+........| .....+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~----~~~~~~~~~t~~----~~~~~~~----------------------------- 58 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ----IGEVVTTKPTIG----FNVETLS----------------------------- 58 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC----CSEEEEECSSTT----CCEEEEE-----------------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHh----cCCcCccCCcCc----cceEEEE-----------------------------
Confidence 445668889999999999999998 344422222222 1110000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHh
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIA 186 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~ 186 (293)
..+..+.++||||......... .....+|.+++|+|+........... .+..... ...
T Consensus 59 --------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~ 119 (183)
T 1moz_A 59 --------YKNLKLNVWDLGGQTSIRPYWR--------CYYADTAAVIFVVDSTDKDRMSTASK---ELHLMLQEEELQD 119 (183)
T ss_dssp --------ETTEEEEEEEEC----CCTTGG--------GTTTTEEEEEEEEETTCTTTHHHHHH---HHHHHTTSSTTSS
T ss_pred --------ECCEEEEEEECCCCHhHHHHHH--------HHhccCCEEEEEEECCCHHHHHHHHH---HHHHHHcChhhCC
Confidence 1234578999999765322221 12246889999999875422111000 0111111 123
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+.++|+||+|+.+.. ...++.+.+....-. . ....++.+|+++|+|++++.+++.+
T Consensus 120 ~piilv~nK~Dl~~~~----~~~~i~~~~~~~~~~---------~-~~~~~~~~Sa~~~~gi~~l~~~l~~ 176 (183)
T 1moz_A 120 AALLVFANKQDQPGAL----SASEVSKELNLVELK---------D-RSWSIVASSAIKGEGITEGLDWLID 176 (183)
T ss_dssp CEEEEEEECTTSTTCC----CHHHHHHHTTTTTCC---------S-SCEEEEEEBGGGTBTHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCCC----CHHHHHHHhCccccc---------C-CceEEEEccCCCCcCHHHHHHHHHH
Confidence 5779999999997653 234444443321100 0 1125788999999999999988864
No 93
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.45 E-value=6.2e-13 Score=106.24 Aligned_cols=114 Identities=13% Similarity=0.042 Sum_probs=67.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~ 196 (293)
+..+.++||||........... ...+|.+++|+|+.+......... .+...... -..+.++|+||+
T Consensus 43 ~~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~piilv~nK~ 111 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQ 111 (164)
T ss_dssp SCEEEEEECCCCGGGHHHHHHH--------TTTCSEEEEEEETTCGGGHHHHHH---HHHHHHTCGGGTTCEEEEEEECT
T ss_pred CEEEEEEEcCCChhhHHHHHHH--------hccCCEEEEEEECCCHHHHHHHHH---HHHHHHhchhhcCCeEEEEEECc
Confidence 3568899999986544433222 256789999999976532211100 01111111 145789999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|+.+.. ...++...+....-.. . ...++.+||++|.|++++..++.+.
T Consensus 112 Dl~~~~----~~~~~~~~~~~~~~~~---------~-~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 112 DLPNAM----NAAEITDKLGLHSLRH---------R-NWYIQATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp TSTTCC----CHHHHHHHTTGGGCSS---------C-CEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CCcCCC----CHHHHHHHhCcccccC---------c-cEEEEEcccCCCcCHHHHHHHHHHH
Confidence 997653 2344443332111000 0 1247889999999999999888653
No 94
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.44 E-value=2.7e-13 Score=109.96 Aligned_cols=158 Identities=15% Similarity=0.052 Sum_probs=89.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+..-++++|.+|+|||||+|+|+.... .....++ .+.+.. . .....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~------~~~~~~t-~~~~~~--~----------~~~~~--------------- 53 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF------VSDYDPT-IEDSYT--K----------ICSVD--------------- 53 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC------CSSCCTT-CCEEEE--E----------EEEET---------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC------ccccCCC-cCceEE--E----------EEEEC---------------
Confidence 456688999999999999999996410 0111111 111100 0 00000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~ 187 (293)
.....+.|+||||..+.......+ ....+.+++|+|............ .+....... ..
T Consensus 54 -------~~~~~~~~~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~ 115 (181)
T 2fn4_A 54 -------GIPARLDILDTAGQEEFGAMREQY--------MRAGHGFLLVFAINDRQSFNEVGK---LFTQILRVKDRDDF 115 (181)
T ss_dssp -------TEEEEEEEEECCCTTTTSCCHHHH--------HHHCSEEEEEEETTCHHHHHHHHH---HHHHHHHHHTSSCC
T ss_pred -------CEEEEEEEEECCCchhhHHHHHHH--------HhhCCEEEEEEeCCCHHHHHHHHH---HHHHHHHhcCCCCC
Confidence 012457899999976543333221 135788999999987543221100 011121222 34
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.++|+||+|+.+..+. .........+..+ ..++.+|+++|+|++++..++.+
T Consensus 116 piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~l~~ 168 (181)
T 2fn4_A 116 PVVLVGNKADLESQRQV--PRSEASAFGASHH---------------VAYFEASAKLRLNVDEAFEQLVR 168 (181)
T ss_dssp CEEEEEECGGGGGGCCS--CHHHHHHHHHHTT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred CEEEEEECccccccccc--CHHHHHHHHHHcC---------------CeEEEecCCCCCCHHHHHHHHHH
Confidence 78999999999765432 2233333333221 24678999999999999888754
No 95
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.44 E-value=4.3e-13 Score=126.99 Aligned_cols=155 Identities=15% Similarity=0.082 Sum_probs=91.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
.-++|+|.+|+|||||+|+|+... . +...+ +.+.+...+.
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~----~--~~~~~--T~~~~~~~~~-------------------------------- 362 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQ----S--VTTIP--TVGFNVETVT-------------------------------- 362 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS----C--CCCCC--CSSEEEEEEE--------------------------------
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCC----C--CCcCC--ccceeEEEEE--------------------------------
Confidence 347789999999999999999532 1 11111 1222221111
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccC
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFAD 189 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~ 189 (293)
..+..+.|+||+|......+. .......|++|+|+|++.......... .+...+.. ...|.
T Consensus 363 -----~~~~~~~l~Dt~G~~~~~~~~--------~~~~~~ad~~i~V~D~~~~~s~~~~~~---~~~~~~~~~~~~~~p~ 426 (497)
T 3lvq_E 363 -----YKNVKFNVWDVGGQDKIRPLW--------RHYYTGTQGLIFVVDCADRDRIDEARQ---ELHRIINDREMRDAII 426 (497)
T ss_dssp -----SSSCEEEEEEECCCGGGSGGG--------GGGGTTCCEEEEEEETTCGGGHHHHHH---HHHHHHTSGGGTTCEE
T ss_pred -----eCCEEEEEEECCCcHHHHHHH--------HHHhccCCEEEEEEECcchhHHHHHHH---HHHHHhhhhhcCCCcE
Confidence 134568899999965433222 122356899999999987532221100 01111111 24578
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
++|+||+|+.+.. ...++...+...... .....++.+||++|+|++++.+|+.+
T Consensus 427 ilv~NK~Dl~~~~----~~~~~~~~~~~~~~~----------~~~~~~~~~SA~~g~gi~~l~~~l~~ 480 (497)
T 3lvq_E 427 LIFANKQDLPDAM----KPHEIQEKLGLTRIR----------DRNWYVQPSCATSGDGLYEGLTWLTS 480 (497)
T ss_dssp EEEEECCSSSSCC----CHHHHHHHTTCTTCC----------SSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred EEEEECCCCCcCC----CHHHHHHHhchhhhh----------cCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999997653 234444443211100 01235789999999999999999865
No 96
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.44 E-value=4.3e-13 Score=110.10 Aligned_cols=107 Identities=16% Similarity=0.079 Sum_probs=63.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~ 196 (293)
.++.|+||||..+....... .....+.+++|+|........... .+...+... ..+.++|+||+
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~p~ilv~nK~ 136 (190)
T 3con_A 69 CLLDILDTAGQEEYSAMRDQ--------YMRTGEGFLCVFAINNSKSFADIN----LYREQIKRVKDSDDVPMVLVGNKC 136 (190)
T ss_dssp EEEEEEECCC-------------------CTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHTCSCCCEEEEEECT
T ss_pred EEEEEEECCChHHHHHHHHH--------hhCcCCEEEEEEECcCHHHHHHHH----HHHHHHHHHhCCCCCeEEEEEECC
Confidence 45789999996544333221 224678899999998654322110 012222222 35789999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+.. ...+.+.+..+..+ ..++.+|++++.|++++..++.+
T Consensus 137 Dl~~~~---~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 179 (190)
T 3con_A 137 DLPTRT---VDTKQAHELAKSYG---------------IPFIETSAKTRQGVEDAFYTLVR 179 (190)
T ss_dssp TCSCCC---SCHHHHHHHHHHHT---------------CCEEECCTTTCTTHHHHHHHHHH
T ss_pred cCCccc---CCHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence 998633 23445555554432 14688999999999999888754
No 97
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.44 E-value=6.9e-13 Score=109.60 Aligned_cols=160 Identities=16% Similarity=0.116 Sum_probs=87.9
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
..+..-++++|.+|+|||||+++++... .. ...+. .+.....+.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~----~~--~~~~t--~~~~~~~~~---------------------------- 69 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGE----IV--TTIPT--IGFNVETVE---------------------------- 69 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSC----CE--EEEEE--TTEEEEEEE----------------------------
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCC----cc--ccCCc--CceeEEEEE----------------------------
Confidence 3445568889999999999999998431 11 11111 111100000
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---H
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---I 185 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i 185 (293)
..+..+.|+||||.......... ....+|++++|+|+........... .+...... -
T Consensus 70 ---------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~iilv~D~~~~~s~~~~~~---~l~~~~~~~~~~ 129 (192)
T 2b6h_A 70 ---------YKNICFTVWDVGGQDKIRPLWRH--------YFQNTQGLIFVVDSNDRERVQESAD---ELQKMLQEDELR 129 (192)
T ss_dssp ---------ETTEEEEEEECC-----CTTHHH--------HHHTCCEEEEEEETTCGGGHHHHHH---HHHHHHTCGGGT
T ss_pred ---------ECCEEEEEEECCCCHhHHHHHHH--------HhccCCEEEEEEECCCHHHHHHHHH---HHHHHhcccccC
Confidence 12346789999997543222211 1246789999999976532211100 01111111 1
Q ss_pred hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
..+.++|+||+|+.+.. ...++...+....... ....++.+||++|.|++++..++.+.
T Consensus 130 ~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~----------~~~~~~~~SA~~g~gi~~l~~~l~~~ 188 (192)
T 2b6h_A 130 DAVLLVFANKQDMPNAM----PVSELTDKLGLQHLRS----------RTWYVQATCATQGTGLYDGLDWLSHE 188 (192)
T ss_dssp TCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCSS----------CCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCCCCC----CHHHHHHHhCcccccC----------CceEEEECcCCCcCCHHHHHHHHHHH
Confidence 45789999999997653 2344444332211100 01246889999999999999888643
No 98
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=1.5e-13 Score=113.19 Aligned_cols=109 Identities=12% Similarity=0.076 Sum_probs=66.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~ 196 (293)
...+.|+||||.......... ....+|++++|+|+.+....... . .+...+.+ -..+.++|+||+
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~piilv~nK~ 138 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTA--------YYRGAMGFILMYDITNEESFNAV-Q---DWATQIKTYSWDNAQVILVGNKC 138 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHH--------HHTTCCEEEEEEETTCHHHHHTH-H---HHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEEEeCCChHHHHHHHHH--------HHccCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhcCCCCCEEEEEECC
Confidence 345789999995433333222 12467889999999865432111 0 01222222 145679999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+.... .........+..+ ..++.+|+++|.|++++..++.+
T Consensus 139 Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 182 (191)
T 3dz8_A 139 DMEEERVV--PTEKGQLLAEQLG---------------FDFFEASAKENISVRQAFERLVD 182 (191)
T ss_dssp TCGGGCCS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred CCcccccc--CHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHH
Confidence 98764432 3344444444432 24678999999999999888754
No 99
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.43 E-value=6.1e-13 Score=109.73 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=70.5
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||||......... .....+|++++|+|+........... .+...+.+. ..+.++|.||+|+
T Consensus 71 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ilv~nK~Dl 139 (194)
T 3reg_A 71 FILHLWDTAGQEEYDRLRP--------LSYADSDVVLLCFAVNNRTSFDNIST---KWEPEIKHYIDTAKTVLVGLKVDL 139 (194)
T ss_dssp EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTSEEEEEEECGGG
T ss_pred EEEEEEECCCcHHHHHHhH--------hhccCCcEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence 3468999999543322221 12246789999999987654322100 122222222 3578999999999
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.+...+....+.+....+.++- ..++.+||++|+|++++..++.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (194)
T 3reg_A 140 RKDGSDDVTKQEGDDLCQKLGC--------------VAYIEASSVAKIGLNEVFEKSVDC 185 (194)
T ss_dssp CCTTTTCCCHHHHHHHHHHHTC--------------SCEEECBTTTTBSHHHHHHHHHHH
T ss_pred ccCCCCcccHHHHHHHHHhcCC--------------CEEEEeecCCCCCHHHHHHHHHHH
Confidence 8643222345556655555432 237889999999999998887653
No 100
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.43 E-value=3.5e-13 Score=116.24 Aligned_cols=123 Identities=18% Similarity=0.146 Sum_probs=69.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCC-CCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF-GEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~-g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
..-|+|+|.+|+|||||+|+|+ +.++.+....+ |.+........
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~----~~~~~~~~~~~~~~T~~~~~~~~------------------------------- 65 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSIL----GQRRFFSRLGATSVTRACTTGSR------------------------------- 65 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHH----TSCCC---------CCSCEEEEE-------------------------------
T ss_pred ceEEEEECCCCCcHHHHHHHHh----CCCCccccCCCCCccccEEEEEE-------------------------------
Confidence 3457889999999999999999 44433332222 11110000000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchh----hccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQ----LESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI- 185 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~----~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi- 185 (293)
...+.++.|+||||+.++.......+.... ......+|++++|+|+..+...... ....+.++
T Consensus 66 ------~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~------~~~~l~~~~ 133 (247)
T 3lxw_A 66 ------RWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQ------AVRQVRDMF 133 (247)
T ss_dssp ------EETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHH------HHHHHHHHH
T ss_pred ------EECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHH------HHHHHHHHh
Confidence 013456889999998765544311111111 1223678999999999764322111 22333333
Q ss_pred -----hccCEEEEeCCCCCCC
Q 022736 186 -----AFADVVILNKVDLVSP 201 (293)
Q Consensus 186 -----~~a~iivlNK~D~~~~ 201 (293)
..+.+++.||+|+.+.
T Consensus 134 ~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 134 GEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp CGGGGGGEEEEEECGGGGTTC
T ss_pred ChhhhccEEEEEEchHhcCCC
Confidence 5688999999999764
No 101
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.43 E-value=1.4e-12 Score=105.51 Aligned_cols=109 Identities=10% Similarity=0.019 Sum_probs=66.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hcc-CEEEEe
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFA-DVVILN 194 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a-~iivlN 194 (293)
..+.++||||..........+ ...+|.+++|+|+.+....... . .+...+.+. ..+ .++|+|
T Consensus 56 ~~~~~~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~~~~~iilv~n 123 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKMLDKY--------IYGAQGVLLVYDITNYQSFENL-E---DWYTVVKKVSEESETQPLVALVGN 123 (178)
T ss_dssp EEEEEEECTTCCTTCTTHHHH--------HTTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred EEEEEEECCCCccccchhhHH--------HhhCCEEEEEEECCCHHHHHHH-H---HHHHHHHHHhcccCCCCeEEEEEE
Confidence 467899999976543333222 2467899999999875442211 0 011122221 234 578999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|+|+.+..+. ..+......+..+ ..++.+||++|+|++++..++.+.
T Consensus 124 K~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 124 KIDLEHMRTI--KPEKHLRFCQENG---------------FSSHFVSAKTGDSVFLCFQKVAAE 170 (178)
T ss_dssp CGGGGGGCSS--CHHHHHHHHHHHT---------------CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred cccccccccc--CHHHHHHHHHHcC---------------CcEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999764321 2344444444332 135789999999999999988654
No 102
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=3.1e-13 Score=111.11 Aligned_cols=104 Identities=15% Similarity=0.078 Sum_probs=65.2
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-------hccCEEEE
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL 193 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-------~~a~iivl 193 (293)
..+.|+||||.......... ....+|.+++|+|+........ ...++.++ ..+.++|+
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~~~p~ilv~ 128 (195)
T 1x3s_A 64 AKLAIWDTAGQERFRTLTPS--------YYRGAQGVILVYDVTRRDTFVK-------LDNWLNELETYCTRNDIVNMLVG 128 (195)
T ss_dssp EEEEEEEECSSGGGCCSHHH--------HHTTCCEEEEEEETTCHHHHHT-------HHHHHHHHTTCCSCSCCEEEEEE
T ss_pred EEEEEEeCCCchhhhhhhHH--------HhccCCEEEEEEECcCHHHHHH-------HHHHHHHHHHhcCcCCCcEEEEE
Confidence 45789999996543222211 2246789999999987543321 11222222 24568999
Q ss_pred eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
||+|+.+.+ ..........+..+ ..++.+|++++.|++++..++.+
T Consensus 129 nK~Dl~~~~---~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 174 (195)
T 1x3s_A 129 NKIDKENRE---VDRNEGLKFARKHS---------------MLFIEASAKTCDGVQCAFEELVE 174 (195)
T ss_dssp ECTTSSSCC---SCHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHHH
T ss_pred ECCcCcccc---cCHHHHHHHHHHcC---------------CEEEEecCCCCCCHHHHHHHHHH
Confidence 999995433 23344444444332 23678999999999999888754
No 103
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.43 E-value=1.9e-13 Score=128.84 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=70.2
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~ 200 (293)
..+.|+||||..+. . .........+|.+++|+|+......... +....+.+...+.++++||+|+.+
T Consensus 73 ~~i~iiDtPGh~~~---~-----~~~~~~~~~aD~~ilVvda~~g~~~qt~-----e~l~~~~~~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 73 YRITLVDAPGHADL---I-----RAVVSAADIIDLALIVVDAKEGPKTQTG-----EHMLILDHFNIPIIVVITKSDNAG 139 (482)
T ss_dssp EEEEECCCSSHHHH---H-----HHHHHHTTSCCEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCBCEEEECTTSSC
T ss_pred EEEEEEECCChHHH---H-----HHHHHHHhhCCEEEEEEecCCCccHHHH-----HHHHHHHHcCCCEEEEEECCCccc
Confidence 46899999996331 1 1123344678999999999764322111 023345566778899999999987
Q ss_pred CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
++......+++.+.++... .+...+++++||++|+|+++|.+++.+
T Consensus 140 ~~~~~~~~~~l~~~l~~~~-----------~~~~~~ii~vSA~~g~gI~~L~~~L~~ 185 (482)
T 1wb1_A 140 TEEIKRTEMIMKSILQSTH-----------NLKNSSIIPISAKTGFGVDELKNLIIT 185 (482)
T ss_dssp HHHHHHHHHHHHHHHHHSS-----------SGGGCCEEECCTTTCTTHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhc-----------ccccceEEEEECcCCCCHHHHHHHHHH
Confidence 4321112233333333220 011245789999999999999988865
No 104
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.42 E-value=6.3e-13 Score=120.74 Aligned_cols=164 Identities=19% Similarity=0.227 Sum_probs=91.9
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+.+.++++|.+|+|||||+|+|+. ... .+...++.+..+....+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~----~~~-~~~~~~~~t~~~~~~~~~----------------------------- 210 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTT----AKP-EIASYPFTTRGINVGQFE----------------------------- 210 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCS----SCC-EEECCTTCSSCEEEEEEE-----------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC----CCC-ccCCCCCeeeceeEEEEE-----------------------------
Confidence 4677899999999999999999994 332 233333331211100000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHHHH-
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQI- 185 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~qi- 185 (293)
..+.++.++||||+.+..... ...............|.+++|+|++... +..... .. +.......
T Consensus 211 --------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~-~~--~~~i~~~~~ 279 (357)
T 2e87_A 211 --------DGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQI-HL--FEEVHGEFK 279 (357)
T ss_dssp --------ETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHH-HH--HHHHHHHTT
T ss_pred --------ecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHH-HH--HHHHHHhcC
Confidence 123457899999975531100 0000001111123478899999976532 111100 00 11112212
Q ss_pred hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
..+.++|+||+|+.+.. ..+.+.+.++..+ .+++.+||++|+|++++.+++.+
T Consensus 280 ~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~---------------~~~~~iSA~~g~gi~~l~~~i~~ 332 (357)
T 2e87_A 280 DLPFLVVINKIDVADEE----NIKRLEKFVKEKG---------------LNPIKISALKGTGIDLVKEEIIK 332 (357)
T ss_dssp TSCEEEEECCTTTCCHH----HHHHHHHHHHHTT---------------CCCEECBTTTTBTHHHHHHHHHH
T ss_pred CCCEEEEEECcccCChH----HHHHHHHHHHhcC---------------CCeEEEeCCCCcCHHHHHHHHHH
Confidence 57889999999998643 2233433333211 24688999999999999988864
No 105
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.42 E-value=2.3e-13 Score=120.15 Aligned_cols=115 Identities=13% Similarity=0.183 Sum_probs=63.3
Q ss_pred CCCEEEEecCCCCC------cHH---HHHhhhcchhhccccccccE-EEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736 120 RLDHILLETTGLAN------PAP---LASVLWLDDQLESAVRLDSI-ITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (293)
Q Consensus 120 ~~d~iiidt~G~~~------~~~---~~~~~~~~~~~~~~~~~d~v-i~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ 189 (293)
..++.||||||+.. +.. ...... ..++ ...+.+ ++|+|+.......+.. .+...+.....+.
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~il~v~d~~~~~~~~~~~----~~~~~~~~~~~~~ 195 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFV---TKENCLILAVSPANSDLANSDAL----KIAKEVDPQGQRT 195 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHH-HHHH---TSTTEEEEEEEESSSCGGGCHHH----HHHHHHCTTCSSE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHH-HHHH---cCCCeEEEEEecCCcchhhhHHH----HHHHHhCCCCCeE
Confidence 36899999999764 221 111111 1122 234434 4789987533211100 0122222234678
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhh-cCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEI-NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~l-np~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
++|+||+|+.+.... . ...++.. .+ -..++..++.+||++|.|++++.+++.+
T Consensus 196 i~V~NK~Dl~~~~~~--~----~~~~~~~~~~---------~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 196 IGVITKLDLMDEGTD--A----RDVLENKLLP---------LRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp EEEEECGGGSCTTCC--C----HHHHTTCSSC---------CTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred EEEEEccccCCCCch--H----HHHHhCCcCc---------CCCCcEEEECCChhhccccccHHHHHHH
Confidence 999999999875421 1 1222211 01 0012346889999999999999888765
No 106
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.41 E-value=1.1e-12 Score=109.44 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=64.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.|+||||........ ......+|.+++|+|+......... . .+...+.+. ..+.++|+||+|
T Consensus 69 ~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~piilv~nK~D 136 (213)
T 3cph_A 69 VKLQLWDTAGQERFRTIT--------TAYYRGAMGIILVYDVTDERTFTNI-K---QWFKTVNEHANDEAQLLLVGNKSD 136 (213)
T ss_dssp EEEEEECCTTGGGGTCCC--------HHHHTTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHTTTCSEEEEEEECTT
T ss_pred EEEEEEeCCCcHHHHHHH--------HHHhccCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCCEEEEEECCC
Confidence 457899999954322111 1122467899999999865432111 0 011222222 356799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.... ..........+..+ ..++.+|++++.|++++..++.+
T Consensus 137 l~~~~---~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 178 (213)
T 3cph_A 137 METRV---VTADQGEALAKELG---------------IPFIESSAKNDDNVNEIFFTLAK 178 (213)
T ss_dssp CSSCC---SCHHHHHHHHHHHT---------------CCEEECBTTTTBSSHHHHHHHHH
T ss_pred Ccccc---cCHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 95332 12344444444332 14688999999999999888754
No 107
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.41 E-value=1.4e-13 Score=115.68 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=62.9
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.|+||||.......... ....+|++++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~piilv~nK~D 128 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDV--------YYIGASGAILFFDVTSRITCQNLA----RWVKEFQAVVGNEAPIVVCANKID 128 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHH--------HHTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHCSSSCEEEEEECTT
T ss_pred EEEEEEecCCchhhchHHHH--------HhhcCCEEEEEEeCCCHHHHHHHH----HHHHHHHHhcCCCCCEEEEEECCC
Confidence 45789999995432211111 124588999999998765432210 011222222 357899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+. .........+.. ...++.+||++|.|++++..++.+
T Consensus 129 l~~~~~~--~~~~~~~~~~~~---------------~~~~~~~Sa~~g~gv~~l~~~l~~ 171 (218)
T 4djt_A 129 IKNRQKI--SKKLVMEVLKGK---------------NYEYFEISAKTAHNFGLPFLHLAR 171 (218)
T ss_dssp CC----C--CHHHHHHHTTTC---------------CCEEEEEBTTTTBTTTHHHHHHHH
T ss_pred Ccccccc--CHHHHHHHHHHc---------------CCcEEEEecCCCCCHHHHHHHHHH
Confidence 9865321 222222222211 124788999999999999888754
No 108
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=2.8e-12 Score=106.98 Aligned_cols=158 Identities=21% Similarity=0.168 Sum_probs=90.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+..-|+|+|.+|+|||||+|+|+..... ...+.+.+.+.... .+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-------~~~~~t~~~~~~~~-----------~~~~~--------------- 71 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP-------PGQGATIGVDFMIK-----------TVEIN--------------- 71 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-------TTCCCCCSEEEEEE-----------EEEET---------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-------CCCCCccceeEEEE-----------EEEEC---------------
Confidence 3456889999999999999999964210 11111111111000 00000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~ 187 (293)
.....+.|+||||......+... ....+|.+++|+|+......... . .+...+.+. ..
T Consensus 72 -------~~~~~l~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~D~~~~~s~~~~-~---~~~~~i~~~~~~~~ 132 (201)
T 2ew1_A 72 -------GEKVKLQIWDTAGQERFRSITQS--------YYRSANALILTYDITCEESFRCL-P---EWLREIEQYASNKV 132 (201)
T ss_dssp -------TEEEEEEEEEECCSGGGHHHHGG--------GSTTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHSCTTC
T ss_pred -------CEEEEEEEEECCCcHHHHHHHHH--------HHhcCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCC
Confidence 01245789999997544333321 22568899999999865432211 0 011222222 34
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.++|+||+|+.+..+. .........+..+ ..++.+||++|+|++++..++..
T Consensus 133 piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gv~~l~~~l~~ 185 (201)
T 2ew1_A 133 ITVLVGNKIDLAERREV--SQQRAEEFSEAQD---------------MYYLETSAKESDNVEKLFLDLAC 185 (201)
T ss_dssp EEEEEEECGGGGGGCSS--CHHHHHHHHHHHT---------------CCEEECCTTTCTTHHHHHHHHHH
T ss_pred CEEEEEECCCCcccccc--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 67899999999754332 2334443333322 24678999999999999888754
No 109
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.41 E-value=2.4e-13 Score=113.06 Aligned_cols=108 Identities=12% Similarity=0.012 Sum_probs=64.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.|+||||...... . .......+|++++|+|+.+........ .+...+.+. ..+.++|+||+|
T Consensus 74 ~~l~l~Dt~G~~~~~~----~----~~~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~piilv~nK~D 141 (200)
T 2o52_A 74 VKLQIWDTAGQERFRS----V----TRSYYRGAAGALLVYDITSRETYNSLA----AWLTDARTLASPNIVVILCGNKKD 141 (200)
T ss_dssp EEEEEECCTTHHHHSC----C----CHHHHTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHTCTTCEEEEEEECGG
T ss_pred eEEEEEcCCCcHhHHH----H----HHHHhccCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECCC
Confidence 4578999999422111 1 111224678999999998754322110 011112111 456799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+. ...+.....+..+ ..++.+||++|.|++++..++.+
T Consensus 142 l~~~~~v--~~~~~~~~~~~~~---------------~~~~~~SA~~g~gi~~l~~~l~~ 184 (200)
T 2o52_A 142 LDPEREV--TFLEASRFAQENE---------------LMFLETSALTGENVEEAFLKCAR 184 (200)
T ss_dssp GGGGCCS--CHHHHHHHHHHTT---------------CEEEEECTTTCTTHHHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 9754332 2344444444322 24678999999999999888754
No 110
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.41 E-value=2.5e-12 Score=104.96 Aligned_cols=108 Identities=12% Similarity=0.000 Sum_probs=66.9
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D 197 (293)
..+.|+||||.......... ....+|.+++|+|+.+........ .+...+.+ -..+.++|+||+|
T Consensus 59 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~piilv~nK~D 126 (186)
T 2bme_A 59 VKLQIWDTAGQERFRSVTRS--------YYRGAAGALLVYDITSRETYNALT----NWLTDARMLASQNIVIILCGNKKD 126 (186)
T ss_dssp EEEEEEEECCSGGGHHHHHT--------TSTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCcHHHHHHHHH--------HHhcCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECcc
Confidence 35789999997654443322 224688999999998754322110 01111122 2346799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+. ...+.....+..+ ..++.+|+++|+|++++..++.+
T Consensus 127 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 169 (186)
T 2bme_A 127 LDADREV--TFLEASRFAQENE---------------LMFLETSALTGENVEEAFVQCAR 169 (186)
T ss_dssp GGGGCCS--CHHHHHHHHHHTT---------------CEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC---------------CEEEEecCCCCCCHHHHHHHHHH
Confidence 9754332 3344444444322 24678999999999999888754
No 111
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.41 E-value=4.4e-14 Score=130.75 Aligned_cols=161 Identities=20% Similarity=0.256 Sum_probs=92.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
..+-++|+|..|+|||||+|+|+ +.+.+.+...+|++.......+. +
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~----~~~~~~~~~~~gtT~d~~~~~~~-------------~---------------- 79 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALV----GQNVSIVSDYAGTTTDPVYKSME-------------L---------------- 79 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSC----C-------------CCCCEEEEE-------------E----------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHH----cCCCCccCCCCCeeeeeEEEEEE-------------E----------------
Confidence 45668899999999999999999 55555666666642211111111 0
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i 190 (293)
.....+.|+||||+.+...+... ...........+|++++|+|+..... ... +...+.+...+.+
T Consensus 80 -------~~~~~l~liDTpG~~d~~~l~~~-~~~~~~~~l~~aD~vllVvD~~~~~~-~~~------~l~~l~~~~~piI 144 (423)
T 3qq5_A 80 -------HPIGPVTLVDTPGLDDVGELGRL-RVEKARRVFYRADCGILVTDSAPTPY-EDD------VVNLFKEMEIPFV 144 (423)
T ss_dssp -------TTTEEEEEEECSSTTCCCTTCCC-CHHHHHHHHTSCSEEEEECSSSCCHH-HHH------HHHHHHHTTCCEE
T ss_pred -------CCCCeEEEEECcCCCcccchhHH-HHHHHHHHHhcCCEEEEEEeCCChHH-HHH------HHHHHHhcCCCEE
Confidence 01115789999998764332111 01112223356899999999933222 111 3344555578899
Q ss_pred EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+|+||+|+.++... +. .+.+... .. ..++.+||++|.|++++.+++.+.
T Consensus 145 vV~NK~Dl~~~~~~-----~~---~~~l~~~----------~g-~~v~~vSAktg~gI~eL~~~L~~~ 193 (423)
T 3qq5_A 145 VVVNKIDVLGEKAE-----EL---KGLYESR----------YE-AKVLLVSALQKKGFDDIGKTISEI 193 (423)
T ss_dssp EECCCCTTTTCCCT-----HH---HHHSSCC----------TT-CCCCCCSSCCTTSTTTHHHHHHHH
T ss_pred EEEeCcCCCCccHH-----HH---HHHHHHH----------cC-CCEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999876531 11 2222111 11 267899999999999999888654
No 112
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=1.2e-12 Score=108.09 Aligned_cols=108 Identities=17% Similarity=0.054 Sum_probs=67.9
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK 195 (293)
..+.|+||||..........+. ...|.+++|+|+.......... .+...+.++ ..+.++|+||
T Consensus 56 ~~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~~piilv~nK 123 (199)
T 2gf0_A 56 CTLQITDTTGSHQFPAMQRLSI--------SKGHAFILVFSVTSKQSLEELG----PIYKLIVQIKGSVEDIPVMLVGNK 123 (199)
T ss_dssp EEEEEEECCGGGSCHHHHHHHH--------HHCSEEEEEEETTCHHHHHTTH----HHHHHHHHHHSCGGGSCEEEEEEC
T ss_pred EEEEEEeCCChHHhHHHHHHhh--------ccCCEEEEEEECcCHHHHHHHH----HHHHHHHHHhcCCCCCCEEEEEEC
Confidence 4578999999766554443221 4578899999998654322110 011222222 3578999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+|+.+... .........+..+ ..++.+||++|.|++++..++.+.
T Consensus 124 ~Dl~~~~~---~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (199)
T 2gf0_A 124 CDETQREV---DTREAQAVAQEWK---------------CAFMETSAKMNYNVKELFQELLTL 168 (199)
T ss_dssp TTCSSCSS---CHHHHHHHHHHHT---------------CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ccCCcccc---CHHHHHHHHHHhC---------------CeEEEEecCCCCCHHHHHHHHHHH
Confidence 99986432 2334444443332 246789999999999999988653
No 113
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.41 E-value=2.7e-13 Score=112.60 Aligned_cols=108 Identities=16% Similarity=0.077 Sum_probs=58.2
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH------HhccCEEEEe
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ------IAFADVVILN 194 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q------i~~a~iivlN 194 (293)
..+.|+||||......... .....+|++++|+|+.+........ .+...+.. ...+.++|+|
T Consensus 73 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~~~piilv~n 140 (208)
T 2yc2_C 73 VELFLLDTAGSDLYKEQIS--------QYWNGVYYAILVFDVSSMESFESCK----AWFELLKSARPDRERPLRAVLVAN 140 (208)
T ss_dssp EEEEEEETTTTHHHHHHHS--------TTCCCCCEEEEEEETTCHHHHHHHH----HHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred EEEEEEECCCcHHHHHHHH--------HHHhhCcEEEEEEECCCHHHHHHHH----HHHHHHHHhhcccccCCcEEEEEE
Confidence 4578999999754333221 1224678999999998764322110 01222222 2456799999
Q ss_pred CCCCCC-CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCC-cchhhhhhhhhhh
Q 022736 195 KVDLVS-PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD-ATHVTRLEGLLEE 257 (293)
Q Consensus 195 K~D~~~-~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~-~~~~~~l~~~l~~ 257 (293)
|+|+.+ ..+ ...+++.+..+.++ ..++.+|+++ +.|++++..++.+
T Consensus 141 K~Dl~~~~~~--v~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~gi~~l~~~i~~ 188 (208)
T 2yc2_C 141 KTDLPPQRHQ--VRLDMAQDWATTNT---------------LDFFDVSANPPGKDADAPFLSIAT 188 (208)
T ss_dssp CC-------C--CCHHHHHHHHHHTT---------------CEEEECCC-------CHHHHHHHH
T ss_pred Ccccchhhcc--CCHHHHHHHHHHcC---------------CEEEEeccCCCCcCHHHHHHHHHH
Confidence 999986 332 23455555555443 2467899999 9999999888754
No 114
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.41 E-value=1.8e-13 Score=112.49 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=62.9
Q ss_pred CCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-HH---HhccCEEEEeC
Q 022736 121 LDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQ---IAFADVVILNK 195 (293)
Q Consensus 121 ~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~q---i~~a~iivlNK 195 (293)
..+.|+||||..... ..... ....+|.+++|+|+.+........ .+...+ .. ...+.++|+||
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~--------~~~~~d~iilv~D~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK 136 (189)
T 1z06_A 69 IKIQLWDTAGQERFRKSMVQH--------YYRNVHAVVFVYDMTNMASFHSLP----AWIEECKQHLLANDIPRILVGNK 136 (189)
T ss_dssp EEEEEEECCCSHHHHTTTHHH--------HHTTCCEEEEEEETTCHHHHHTHH----HHHHHHHHHCCCSCCCEEEEEEC
T ss_pred EEEEEEECCCchhhhhhhhHH--------HhcCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCCCEEEEEEC
Confidence 457899999964322 11111 124678999999998754322110 011111 11 23567999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCc---chhhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA---THVTRLEGLLEE 257 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~---~~~~~l~~~l~~ 257 (293)
+|+.+..+. ..+......+..+ ..++.+|++++ ++++++..++.+
T Consensus 137 ~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 137 CDLRSAIQV--PTDLAQKFADTHS---------------MPLFETSAKNPNDNDHVEAIFMTLAH 184 (189)
T ss_dssp TTCGGGCCS--CHHHHHHHHHHTT---------------CCEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred cccccccee--CHHHHHHHHHHcC---------------CEEEEEeCCcCCcccCHHHHHHHHHH
Confidence 999765332 2333333333221 24678999999 888888777753
No 115
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.40 E-value=1.1e-12 Score=122.36 Aligned_cols=121 Identities=12% Similarity=0.152 Sum_probs=65.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhh--hcccCCchHHHHHHhcc-CEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK--YRHLSSYPEAIHQIAFA-DVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~--~~~~~~~~~~~~qi~~a-~iivlNK~ 196 (293)
+..+.|+||||..+.... .......+|.+++|+|+......... ...-.+.......++.+ .++++||+
T Consensus 94 ~~~~~iiDTPGh~~f~~~--------~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~ 165 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPN--------MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKM 165 (439)
T ss_pred CeEEEEEECCChHHHHHH--------HHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecC
Confidence 457899999997543222 22334578999999999875321000 00000123344555666 78999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG 253 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~ 253 (293)
|+.+.+......+.+.+.++.+.....+ .......++++||++|.|++++.+
T Consensus 166 Dl~~~~~~~~~~~~i~~~~~~~l~~~g~-----~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 166 DDPTVNWSNERYEECKEKLVPFLKKVGF-----NPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhcc-----cccCCeeEEEeeccCCcccccccc
Confidence 9975321111223333333322111000 000013578999999999987543
No 116
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.40 E-value=8.4e-13 Score=107.60 Aligned_cols=108 Identities=16% Similarity=0.101 Sum_probs=57.2
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.|+||||......... .....+|.+++|+|+......... . .+...+.+. ..+.++|+||+|
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~piilv~nK~D 124 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRTITT--------AYYRGAMGIMLVYDITNEKSFDNI-R---NWIRNIEEHASADVEKMILGNKCD 124 (183)
T ss_dssp EEEEEEEC---------CC--------TTTTTCSEEEEEEETTCHHHHHHH-H---HHHHHHHHHSCTTCEEEEEEEC--
T ss_pred EEEEEEcCCCChhhhhhHH--------HHHhcCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhcCCCCCEEEEEECcc
Confidence 4578999999654322221 122467899999999875432211 0 011222221 357799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+. ..+.+.+..+..+ ..++.+||++|+|++++..++.+
T Consensus 125 l~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~ 167 (183)
T 2fu5_C 125 VNDKRQV--SKERGEKLALDYG---------------IKFMETSAKANINVENAFFTLAR 167 (183)
T ss_dssp CCSCCCS--CHHHHHHHHHHHT---------------CEEEECCC---CCHHHHHHHHHH
T ss_pred CCccCcC--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence 9764332 3345555544432 14678999999999999888754
No 117
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.40 E-value=8.7e-13 Score=108.25 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=90.6
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+..-++++|.+|+|||||+|+|... +.. ...+. .+.....+.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~----~~~--~~~~t--~~~~~~~~~----------------------------- 62 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLG----DVV--TTVPT--VGVNLETLQ----------------------------- 62 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCS----CCE--EECSS--TTCCEEEEE-----------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC----CCC--CcCCC--CceEEEEEE-----------------------------
Confidence 34456888999999999999999842 111 11221 111110000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---Hh
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IA 186 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~ 186 (293)
..+..+.++||||........ ......+|.+++|+|+.+......... .+...... -.
T Consensus 63 --------~~~~~~~~~Dt~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~ 123 (189)
T 2x77_A 63 --------YKNISFEVWDLGGQTGVRPYW--------RCYFSDTDAVIYVVDSTDRDRMGVAKH---ELYALLDEDELRK 123 (189)
T ss_dssp --------ETTEEEEEEEECCSSSSCCCC--------SSSSTTCCEEEEEEETTCCTTHHHHHH---HHHHHHTCSTTTT
T ss_pred --------ECCEEEEEEECCCCHhHHHHH--------HHHhhcCCEEEEEEeCCCHHHHHHHHH---HHHHHHhhhhcCC
Confidence 123467899999975432221 112246899999999976422111000 01111111 24
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.|.++|+||+|+.+... ..++...+...... ... ..++.+||++++|++++.+++.+.
T Consensus 124 ~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---------~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 181 (189)
T 2x77_A 124 SLLLIFANKQDLPDAAS----EAEIAEQLGVSSIM---------NRT-WTIVKSSSKTGDGLVEGMDWLVER 181 (189)
T ss_dssp CEEEEEEECTTSTTCCC----HHHHHHHTTGGGCC---------SSC-EEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CeEEEEEECCCCcCCCC----HHHHHHHhChhhcc---------CCc-eEEEEccCCCccCHHHHHHHHHHH
Confidence 57899999999987542 34444433211100 011 257889999999999999888653
No 118
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.40 E-value=8.3e-13 Score=111.66 Aligned_cols=108 Identities=15% Similarity=0.052 Sum_probs=63.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.|+||||......+.. .....++.+|+|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~vilV~D~~~~~s~~~~~----~~l~~i~~~~~~~~piilv~nK~D 129 (223)
T 3cpj_B 62 IKAQIWDTAGQERYRAITS--------AYYRGAVGALIVYDISKSSSYENCN----HWLSELRENADDNVAVGLIGNKSD 129 (223)
T ss_dssp EEEEEECCTTTTTTTCCCG--------GGTTTCCEEEEEEC-CCHHHHHHHH----HHHHHHHHHCC--CEEEEEECCGG
T ss_pred EEEEEEECCCccchhhhHH--------HHhccCCEEEEEEeCCCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEECcc
Confidence 4578999999654322211 1224678899999998754332210 012222222 456799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+. .........+..+ ..++.+||++++|++++..++.+
T Consensus 130 l~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 172 (223)
T 3cpj_B 130 LAHLRAV--PTEESKTFAQENQ---------------LLFTETSALNSENVDKAFEELIN 172 (223)
T ss_dssp GGGGCCS--CHHHHHHHHHHTT---------------CEEEECCCC-CCCHHHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 9764332 2344444444322 24678999999999999888754
No 119
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.40 E-value=3.9e-13 Score=117.66 Aligned_cols=87 Identities=16% Similarity=0.268 Sum_probs=41.2
Q ss_pred cccccEEEEEcccc-hHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeec
Q 022736 151 VRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR 229 (293)
Q Consensus 151 ~~~d~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~ 229 (293)
.++|.+++++++.. .....+.. +...+.. ..+.++|+||+|+++..+......++.+.++..+
T Consensus 114 ~r~~~~l~~i~~~~~~~~~~d~~-----~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~---------- 177 (274)
T 3t5d_A 114 NRVQCCLYFIAPSGHGLKPLDIE-----FMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHK---------- 177 (274)
T ss_dssp CCCCEEEEEECSCCSSCCHHHHH-----HHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTT----------
T ss_pred CceeEEEEEecCCCCCCCHHHHH-----HHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcC----------
Confidence 34678888887654 22222211 1222232 5789999999999875432111222333332211
Q ss_pred CCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 230 CQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 230 ~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
..++.+|+.++++++++..++.+.
T Consensus 178 -----i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 178 -----IKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp -----CCCCCC-----------CHHHHHT
T ss_pred -----CeEEcCCCCCChhHHHHHHHHhcC
Confidence 246788999999999998888764
No 120
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.39 E-value=4.3e-13 Score=111.95 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=66.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||||......... .....+|++++|+|+........... .+...+.+. ..+.++|+||+|+
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 146 (204)
T 4gzl_A 78 VNLGLWDTAGLEDYDRLRP--------LSYPQTDVFLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDL 146 (204)
T ss_dssp EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCSSCCEEEEEECHHH
T ss_pred EEEEEEECCCchhhHHHHH--------HHhccCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEechhh
Confidence 3466999999754322221 12356899999999987654332110 123333333 5678999999999
Q ss_pred CCCCCCc----------chHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPERSG----------DSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~~----------~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+..... ....+.....+.+ ....++.+||++|+|++++..++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEI--------------GAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccchhhhhhhhccccccccHHHHHHHHHhc--------------CCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 8653100 0111111122211 1234788999999999999888754
No 121
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.39 E-value=3.8e-12 Score=105.78 Aligned_cols=112 Identities=16% Similarity=0.133 Sum_probs=65.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||||......... .....+|.+++|+|............ .+...+.+. ..+.++|+||+|+
T Consensus 73 ~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 141 (201)
T 2gco_A 73 VELALWDTAGQEDYDRLRP--------LSYPDTDVILMCFSIDSPDSLENIPE---KWTPEVKHFCPNVPIILVGNKKDL 141 (201)
T ss_dssp EEEEEECCCCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTCCEEEEEECGGG
T ss_pred EEEEEEECCCchhHHHHHH--------HhcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEecHHh
Confidence 4578999999643322211 12246789999999886543222100 122333333 5678999999999
Q ss_pred CCCCCC----------cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPERS----------GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~----------~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+.... ....++..+..+.+ ....++.+||++|+|++++..++.+
T Consensus 142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~SA~~g~gi~~l~~~i~~ 196 (201)
T 2gco_A 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRI--------------SAFGYLECSAKTKEGVREVFEMATR 196 (201)
T ss_dssp TTCHHHHHHHHTTTCCCCCHHHHHHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred hcCccchhhhcccccCcCCHHHHHHHHHhC--------------CCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 865210 00111112222211 1125788999999999999988764
No 122
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.39 E-value=1.3e-12 Score=108.33 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=65.6
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-------hccCEEEE
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL 193 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-------~~a~iivl 193 (293)
..+.++||+|.......... .+ ....+++++|+|..+...... ...++.++ ..|.++|.
T Consensus 72 ~~l~i~Dt~g~~~~~~~~~~----~~---~~~~d~~ilv~d~~~~~s~~~-------~~~~~~~i~~~~~~~~~piilv~ 137 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAGGWLRD----HC---LQTGDAFLIVFSVTDRRSFSK-------VPETLLRLRAGRPHHDLPVILVG 137 (195)
T ss_dssp EEEEEECCCCCSGGGHHHHH----HH---HHHCSEEEEEEETTCHHHHHT-------HHHHHHHHHHHSTTSCCCEEEEE
T ss_pred EEEEEEecCCCccchhhhHH----Hh---hccCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhcCCCCCCEEEEe
Confidence 45678999998654332211 11 135788999999986543221 12222222 45789999
Q ss_pred eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
||+|+.+.... ..+......+..+ ..++.+||+++.|++++..++..
T Consensus 138 nK~Dl~~~~~v--~~~~~~~~a~~~~---------------~~~~e~Sa~~~~~v~~lf~~l~~ 184 (195)
T 3cbq_A 138 NKSDLARSREV--SLEEGRHLAGTLS---------------CKHIETSAALHHNTRELFEGAVR 184 (195)
T ss_dssp ECTTCTTTCCS--CHHHHHHHHHHTT---------------CEEEEEBTTTTBSHHHHHHHHHH
T ss_pred echhccccCCc--CHHHHHHHHHHhC---------------CEEEEEcCCCCCCHHHHHHHHHH
Confidence 99999764432 3344444443322 13578999999999999888754
No 123
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.39 E-value=1.3e-12 Score=109.77 Aligned_cols=106 Identities=14% Similarity=0.074 Sum_probs=66.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-------HhccCEEE
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-------IAFADVVI 192 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-------i~~a~iiv 192 (293)
...+.|+||||......... .....+|.+++|+|+........ ...++.+ -..+.++|
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~--------~~~~~~d~iilV~D~~~~~s~~~-------~~~~l~~i~~~~~~~~~piilV 147 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTT--------AFFRDAMGFLLMFDLTSQQSFLN-------VRNWMSQLQANAYCENPDIVLI 147 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHH--------HHHTTCCEEEEEEETTCHHHHHH-------HHHHHHTCCCCCTTTCCEEEEE
T ss_pred eEEEEEEECCCcHhHHhHHH--------HHhcCCCEEEEEEECcCHHHHHH-------HHHHHHHHHHhcCcCCCCEEEE
Confidence 35688999999543222221 12246789999999987543221 1122222 23567999
Q ss_pred EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+||+|+.+..+. ....+....+..+ ..++.+|+++++|++++..++.+
T Consensus 148 ~NK~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~gi~~l~~~l~~ 195 (217)
T 2f7s_A 148 GNKADLPDQREV--NERQARELADKYG---------------IPYFETSAATGQNVEKAVETLLD 195 (217)
T ss_dssp EECTTCGGGCCS--CHHHHHHHHHHTT---------------CCEEEEBTTTTBTHHHHHHHHHH
T ss_pred EECCcccccccc--CHHHHHHHHHHCC---------------CcEEEEECCCCCCHHHHHHHHHH
Confidence 999999764332 2344444444332 24678999999999999888754
No 124
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.39 E-value=1.8e-13 Score=115.51 Aligned_cols=153 Identities=16% Similarity=0.103 Sum_probs=88.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
..-|+++|.+|+|||||+|+++.. ..........|. +...... ...
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~---~~~~~~~~t~~~----~~~~~~~-----------~~~---------------- 60 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTG---EFEKKYVATLGV----EVHPLVF-----------HTN---------------- 60 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHH---HHTCEEETTTTE----EEEEEEE-----------EET----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC---CCCCCCCCccce----eEEEEEE-----------EEC----------------
Confidence 345788999999999999996642 111223334432 1111100 000
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----h
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----A 186 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~ 186 (293)
.....+.|+||||......+.. .....++++++|+|+......... ..++..+ .
T Consensus 61 ------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~-------~~~~~~~~~~~~~ 119 (221)
T 3gj0_A 61 ------RGPIKFNVWDTAGQEKFGGLRD--------GYYIQAQCAIIMFDVTSRVTYKNV-------PNWHRDLVRVCEN 119 (221)
T ss_dssp ------TEEEEEEEEEECSGGGTSCCCH--------HHHTTCCEEEEEEETTCHHHHHTH-------HHHHHHHHHHSTT
T ss_pred ------CEEEEEEEEeCCChHHHhHHHH--------HHHhcCCEEEEEEECCCHHHHHHH-------HHHHHHHHHhCCC
Confidence 1234578999999533211111 112368899999999875443221 1222222 4
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.+.++|+||+|+.+.... .......+..+ ..++.+|+++|.|++++..++.+.
T Consensus 120 ~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~ 172 (221)
T 3gj0_A 120 IPIVLCGNKVDIKDRKVK----AKSIVFHRKKN---------------LQYYDISAKSNYNFEKPFLWLARK 172 (221)
T ss_dssp CCEEEEEECTTSSSCSSC----GGGCCHHHHHT---------------CEEEECBGGGTBTTTHHHHHHHHH
T ss_pred CCEEEEEECCcccccccc----HHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 578999999999765421 11111222211 246789999999999999888653
No 125
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=1.7e-12 Score=108.34 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=66.4
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||||..+...... .....+|.+++|+|............ .+...+.+. ..+.++|+||+|+
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 141 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRP--------LSYPDTDVILMCFSVDSPDSLENIPE---KWVPEVKHFCPNVPIILVANKKDL 141 (207)
T ss_dssp EEEEEEECTTCTTCTTTGG--------GGCTTCCEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTCCEEEEEECGGG
T ss_pred EEEEEEECCCcHHHHHHHH--------hhcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEchhh
Confidence 4578999999765432221 12246789999999986543221100 122233333 5678999999999
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEee-----cCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSV-----RCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~-----~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.+.. .....+..+.... +... ........++.+||++|.|++++..++.+.
T Consensus 142 ~~~~-------~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 142 RSDE-------HVRTELARMKQEP--VRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRA 197 (207)
T ss_dssp GGCH-------HHHHHHHHTTCCC--CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hccc-------cchhhhhhcccCC--CCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 7642 1112222211100 0000 000111257889999999999999988654
No 126
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.39 E-value=1.4e-12 Score=106.78 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=67.0
Q ss_pred CEEEEecCCCCCcH-------HHHHhhhcchhhcc-ccccccEEEEEcccchHHHHhhhcc--cCC----chHHHHHHhc
Q 022736 122 DHILLETTGLANPA-------PLASVLWLDDQLES-AVRLDSIITVVDAKNLLFQIDKYRH--LSS----YPEAIHQIAF 187 (293)
Q Consensus 122 d~iiidt~G~~~~~-------~~~~~~~~~~~~~~-~~~~d~vi~vvDa~~~~~~~~~~~~--~~~----~~~~~~qi~~ 187 (293)
++.++||||+.... ....... ..++.. ...++.++.++|+..+......... ... ..........
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEI-VHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 123 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHH-HHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHH-HHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCC
Confidence 57899999964321 1111111 122232 4456788999999876543111100 000 1112223357
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|.++|+||+|+.+.. ...+....+.++-. .... ...++.+||++|+|++++..++.+.
T Consensus 124 piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~-------~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~~ 181 (190)
T 2cxx_A 124 PTIVAVNKLDKIKNV-----QEVINFLAEKFEVP-------LSEI-DKVFIPISAKFGDNIERLKNRIFEV 181 (190)
T ss_dssp CEEEEEECGGGCSCH-----HHHHHHHHHHHTCC-------GGGH-HHHEEECCTTTCTTHHHHHHHHHHH
T ss_pred ceEEEeehHhccCcH-----HHHHHHHHHHhhhh-------hhcc-CCcEEEEecCCCCCHHHHHHHHHHh
Confidence 889999999998642 12233333333210 0000 1356899999999999999888653
No 127
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.39 E-value=4.4e-13 Score=109.29 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=65.1
Q ss_pred EEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-HH---HhccCEEEEeCCCC
Q 022736 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQ---IAFADVVILNKVDL 198 (293)
Q Consensus 123 ~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~q---i~~a~iivlNK~D~ 198 (293)
+.|+||||.......... ....+|.+++|+|..+........ .+...+ .. ...+.++|+||+|+
T Consensus 68 l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 68 LDVLDTAGQEEFSAMREQ--------YMRTGDGFLIVYSVTDKASFEHVD----RFHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp EEEEECCSCGGGCSSHHH--------HHHHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred EEEEECCCchhhHHHHHH--------HHhcCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEECCCc
Confidence 557999996543222221 124578999999998754321110 011111 11 23467999999999
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccC-Ccchhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY-DATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~-~~~~~~~l~~~l~~ 257 (293)
.+..+ ...+...+..+..+ ..++.+|++ +++|++++..++.+
T Consensus 136 ~~~~~--v~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~~v~~l~~~l~~ 178 (183)
T 3kkq_A 136 MHLRK--VTRDQGKEMATKYN---------------IPYIETSAKDPPLNVDKTFHDLVR 178 (183)
T ss_dssp STTCC--SCHHHHHHHHHHHT---------------CCEEEEBCSSSCBSHHHHHHHHHH
T ss_pred hhccC--cCHHHHHHHHHHhC---------------CeEEEeccCCCCCCHHHHHHHHHH
Confidence 76443 23455555555443 236789999 99999999888754
No 128
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.38 E-value=2.3e-12 Score=104.65 Aligned_cols=113 Identities=13% Similarity=0.060 Sum_probs=64.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||||......... .....+|.+++|+|+.+......... .+...+.+. ..+.++|+||+|+
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 124 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRP--------LSYRGADVFILAFSLISKASYENVSK---KWIPELKHYAPGVPIVLVGTKLDL 124 (182)
T ss_dssp --CEEECCCC-CTTTTTGG--------GGGTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCCEEEEEECHHH
T ss_pred EEEEEEECCCChhhhhhHH--------hhccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEechhh
Confidence 4567999999754332221 12245789999999976543222100 122222222 4678999999998
Q ss_pred CCCCCC--------cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 199 VSPERS--------GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 199 ~~~~~~--------~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.+..+. .....+.....+.++ ...++.+||++|+|++++..++.+.
T Consensus 125 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 125 RDDKQFFIDHPGAVPITTVQGEELKKLIG--------------APAYIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp HTCHHHHHHC--CCCCCHHHHHHHHHHHT--------------CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hcCcccccccccCCCCCHHHHHHHHHHcC--------------CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 764310 001223333333332 1246789999999999999888653
No 129
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=5.5e-13 Score=110.27 Aligned_cols=107 Identities=17% Similarity=0.135 Sum_probs=66.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~ 196 (293)
..+.|+||||... ......+ ....|.+++|+|+.+....... . .+...+.+ -..|.++|+||+
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~--------~~~~d~iilv~D~~~~~s~~~~-~---~~~~~i~~~~~~~~~piilv~NK~ 142 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGH--------MRWGEGFVLVYDITDRGSFEEV-L---PLKNILDEIKKPKNVTLILVGNKA 142 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHH--------HHHCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHHTTSCCCEEEEEECG
T ss_pred EEEEEEECCCCCc-ccchhhh--------hccCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhhCCCCCcEEEEEECc
Confidence 4578999999876 2222221 2457889999999875432111 0 01111211 235689999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc-hhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT-HVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~-~~~~l~~~l~~ 257 (293)
|+.+..+. .........+..+ ..++.+|+++|+ |++++..++.+
T Consensus 143 Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~g~~gi~~l~~~l~~ 187 (196)
T 2atv_A 143 DLDHSRQV--STEEGEKLATELA---------------CAFYECSACTGEGNITEIFYELCR 187 (196)
T ss_dssp GGGGGCCS--CHHHHHHHHHHHT---------------SEEEECCTTTCTTCHHHHHHHHHH
T ss_pred cccccccc--CHHHHHHHHHHhC---------------CeEEEECCCcCCcCHHHHHHHHHH
Confidence 99764322 3344444444332 246789999999 99999888754
No 130
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.37 E-value=1.1e-12 Score=106.37 Aligned_cols=106 Identities=8% Similarity=-0.001 Sum_probs=65.2
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEe
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN 194 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlN 194 (293)
..+.|+||||...+. ....+|++++|+|..+........ .+..++..+ ..|.++|.|
T Consensus 54 ~~l~i~Dt~G~~~~~-------------~~~~~d~~ilv~D~~~~~s~~~~~----~~~~~i~~~~~~~~~~~piilv~n 116 (178)
T 2iwr_A 54 HLVLIREEAGAPDAK-------------FSGWADAVIFVFSLEDENSFQAVS----RLHGQLSSLRGEGRGGLALALVGT 116 (178)
T ss_dssp EEEEEEECSSSCCHH-------------HHHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHCSSSCCCEEEEEEE
T ss_pred EEEEEEECCCCchhH-------------HHHhCCEEEEEEECcCHHHHHHHH----HHHHHHHHHHhcCCCCCCEEEEEE
Confidence 356789999976521 113478899999998764332210 012223333 346799999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+|+.+...+....+.+.+..+..+. ..++.+||++|+|++++..++..
T Consensus 117 K~Dl~~~~~~~v~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~i~~lf~~l~~ 165 (178)
T 2iwr_A 117 QDRISASSPRVVGDARARALXADMKR--------------CSYYETXATYGLNVDRVFQEVAQ 165 (178)
T ss_dssp CTTCBTTBCCCSCHHHHHHHHHHHSS--------------EEEEEEBTTTTBTHHHHHHHHHH
T ss_pred CccccccccCcCCHHHHHHHHHhhcC--------------CeEEEEeccccCCHHHHHHHHHH
Confidence 99995322221234455554444321 24678999999999999887754
No 131
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.37 E-value=1.1e-11 Score=116.86 Aligned_cols=200 Identities=16% Similarity=0.115 Sum_probs=107.5
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l 107 (293)
.+..+|+|+|.+||||||++++|+.. ..|++++++..|+.....++...... .. ..-.++.+....+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~--------~~--~~i~v~~~~~~~dp 168 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNA--------TK--ARIPFYGSYTEMDP 168 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHH--------HH--HTCCEEECCCCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHh--------hc--cCceEEccCCCCCH
Confidence 45778999999999999999999863 34889999999875311111000000 00 00001111111122
Q ss_pred H----HHHHHHHhhcCCCCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736 108 V----QALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (293)
Q Consensus 108 ~----~~l~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (293)
. .++..+. ..++|++||||||..... .+...+. . .......|.+++|+|+........ ....+
T Consensus 169 ~~i~~~al~~~~--~~~~DvvIIDTpG~~~~~~~l~~el~--~-~~~~i~pd~vllVvDa~~g~~~~~-------~a~~~ 236 (504)
T 2j37_W 169 VIIASEGVEKFK--NENFEIIIVDTSGRHKQEDSLFEEML--Q-VANAIQPDNIVYVMDASIGQACEA-------QAKAF 236 (504)
T ss_dssp HHHHHHHHHHHH--HTTCCEEEEEECCCCTTCHHHHHHHH--H-HHHHHCCSEEEEEEETTCCTTHHH-------HHHHH
T ss_pred HHHHHHHHHHHH--HCCCcEEEEeCCCCcccchhHHHHHH--H-HHhhhcCceEEEEEeccccccHHH-------HHHHH
Confidence 2 2233221 267899999999976532 2332211 0 111236788999999986533211 11222
Q ss_pred HHHhcc-CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecC---CCCchhhcccccCCcch-hhhhhhhhhh
Q 022736 183 HQIAFA-DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRC---QVDLSEVLNCRAYDATH-VTRLEGLLEE 257 (293)
Q Consensus 183 ~qi~~a-~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~---~~~~~~i~~~sa~~~~~-~~~l~~~l~~ 257 (293)
.+. .+ +.+|+||+|...... ........+......+..... ..++.+.+.+|+..|.| +..|.+++.+
T Consensus 237 ~~~-~~i~gvVlNK~D~~~~~g------~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e 309 (504)
T 2j37_W 237 KDK-VDVASVIVTKLDGHAKGG------GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE 309 (504)
T ss_dssp HHH-HCCCCEEEECTTSCCCCT------HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred Hhh-cCceEEEEeCCccccchH------HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence 221 45 699999999875432 112222233211111221111 11345566789999998 8888888865
Q ss_pred h
Q 022736 258 H 258 (293)
Q Consensus 258 ~ 258 (293)
.
T Consensus 310 ~ 310 (504)
T 2j37_W 310 L 310 (504)
T ss_dssp T
T ss_pred H
Confidence 4
No 132
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.36 E-value=1.7e-12 Score=105.73 Aligned_cols=114 Identities=12% Similarity=0.044 Sum_probs=66.4
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||||......... .....+|.+++|+|+.+......... .+...+.+. ..+.++|+||+|+
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 121 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYDRLRP--------LSYPQTDVSLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDL 121 (186)
T ss_dssp EEEEEECCCCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTSCEEEEEECHHH
T ss_pred EEEEEEECCCCHhHHHHHH--------HhccCCcEEEEEEECCChhhHHHHHH---HHHHHHHHhCCCCCEEEEeEcccc
Confidence 4567999999754322221 12246789999999987543322100 122223332 5678999999999
Q ss_pred CCCCCC----------cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736 199 VSPERS----------GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 259 (293)
Q Consensus 199 ~~~~~~----------~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~ 259 (293)
.+.... ...........+.. ....++.+||++|+|++++..++.+..
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEI--------------GAVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccchhhhhhcccccccCCHHHHHHHHHhc--------------CCcEEEEecCCCccCHHHHHHHHHHHH
Confidence 764210 00111222222211 113578899999999999998886543
No 133
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=5.1e-12 Score=104.04 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=67.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||||.......... ....+|.+++|+|+.+......... .+...+.+. ..+.++|+||+|+
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 134 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPL--------SYPMTDVFLICFSVVNPASFQNVKE---EWVPELKEYAPNVPFLLIGTQIDL 134 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTCCEEEEEECTTS
T ss_pred EEEEEEECCCCcchhHHHHH--------hcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence 45789999997654332221 2246789999999987543222100 122233333 5678999999999
Q ss_pred CCCCC----------CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 199 VSPER----------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 199 ~~~~~----------~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.+... +....++.....+.++ ...++.+||++|+|++++..++.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIG--------------ACCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp TTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT--------------CSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccccchhhcccccCcccCHHHHHHHHHHcC--------------CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 86420 0012233333333322 1256889999999999999887643
No 134
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.35 E-value=6.9e-12 Score=119.29 Aligned_cols=70 Identities=20% Similarity=0.103 Sum_probs=46.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~ 199 (293)
+..+.||||||..+..... ......+|.+|+|+|+.......... ..........|.++++||+|+.
T Consensus 81 ~~~i~liDTPG~~df~~~~--------~~~l~~aD~allVvDa~~g~~~~t~~-----~~~~~~~~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDT--------YRTLTAVDSALMVIDAAKGVEPRTIK-----LMEVCRLRHTPIMTFINKMDRD 147 (528)
T ss_dssp TEEEEEECCCCSTTCCHHH--------HHGGGGCSEEEEEEETTTCSCHHHHH-----HHHHHHTTTCCEEEEEECTTSC
T ss_pred CEEEEEEECCCchhHHHHH--------HHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEEEEEeCCCCc
Confidence 4568999999987643332 23345789999999998643322211 1223344467899999999997
Q ss_pred CCC
Q 022736 200 SPE 202 (293)
Q Consensus 200 ~~~ 202 (293)
...
T Consensus 148 ~~~ 150 (528)
T 3tr5_A 148 TRP 150 (528)
T ss_dssp CSC
T ss_pred ccc
Confidence 653
No 135
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.35 E-value=1.7e-13 Score=121.95 Aligned_cols=118 Identities=13% Similarity=0.148 Sum_probs=61.5
Q ss_pred CCCEEEEecCCCCCcH------HHHHhhhcchhhccccccccEEEEEcccc-hHHHHhhhcccCCchHHHHHHhccCEEE
Q 022736 120 RLDHILLETTGLANPA------PLASVLWLDDQLESAVRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIAFADVVI 192 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~------~~~~~~~~~~~~~~~~~~d~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~qi~~a~iiv 192 (293)
..+++||||||+.... .+.. .+..........+|.+++|+|+.+ .....+. ......+.....+.++|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~----~~i~~~~~~~~~~~i~v 204 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQ-QIRRMVMAYIKKQNAIIVAVTPANTDLANSDA----LQLAKEVDPEGKRTIGV 204 (315)
T ss_dssp SCSEEEEECCCCC---------CSHH-HHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH----HHHHHHHCSSCSSEEEE
T ss_pred CCCcEEEECCCCccCCCCCCchhHHH-HHHHHHHHHHcCCCeEEEEEEecCcchhhhHH----HHHHHHhCCCCCcEEEE
Confidence 4689999999986521 1111 111122333457888999999742 1110000 00122233335688999
Q ss_pred EeCCCCCCCCCCcchHHHHHHHHHh-hcCCCEEEEeecCCCCchhhcccccCC---cchhhhhhhhhhh
Q 022736 193 LNKVDLVSPERSGDSLDELEKEIHE-INSLAHVIRSVRCQVDLSEVLNCRAYD---ATHVTRLEGLLEE 257 (293)
Q Consensus 193 lNK~D~~~~~~~~~~~~~~~~~l~~-lnp~a~i~~~~~~~~~~~~i~~~sa~~---~~~~~~l~~~l~~ 257 (293)
+||+|+.+..+ ...+ .++. +.+ ...++.++.++|+.+ +.|+.++.+.+.+
T Consensus 205 ~NK~Dl~~~~~--~~~~----~~~~~~~~---------~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~ 258 (315)
T 1jwy_B 205 ITKLDLMDKGT--DAME----VLTGRVIP---------LTLGFIGVINRSQEDIIAKKSIRESLKSEIL 258 (315)
T ss_dssp EECTTSSCSSC--CCHH----HHTTSSSC---------CTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred EcCcccCCcch--HHHH----HHhCCCcc---------CCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence 99999987543 1122 2221 111 012334566677776 6777777766544
No 136
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.35 E-value=4e-12 Score=104.32 Aligned_cols=106 Identities=10% Similarity=0.049 Sum_probs=65.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~ 196 (293)
..+.|+||+|..... .....+++++|+|..+........ .+...+.+ ...+.++|.||+
T Consensus 67 ~~l~i~Dt~G~~~~~-------------~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK~ 129 (184)
T 3ihw_A 67 YLLLIRDEGGPPELQ-------------FAAWVDAVVFVFSLEDEISFQTVY----NYFLRLCSFRNASEVPMVLVGTQD 129 (184)
T ss_dssp EEEEEEECSSSCCHH-------------HHHHCSEEEEEEETTCHHHHHHHH----HHHHHHHTTSCGGGSCEEEEEECT
T ss_pred EEEEEEECCCChhhh-------------eecCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCCCEEEEEECc
Confidence 346789999976543 113478899999998754332210 01111211 245779999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+........+.+.+..+.++. ..++.+||++|.|++++..++.+
T Consensus 130 Dl~~~~~~~v~~~~~~~~~~~~~~--------------~~~~e~Sa~~~~gv~~lf~~l~~ 176 (184)
T 3ihw_A 130 AISAANPRVIDDSRARKLSTDLKR--------------CTYYETCATYGLNVERVFQDVAQ 176 (184)
T ss_dssp TCBTTBCCCSCHHHHHHHHHHTTT--------------CEEEEEBTTTTBTHHHHHHHHHH
T ss_pred ccccccccccCHHHHHHHHHHcCC--------------CeEEEecCCCCCCHHHHHHHHHH
Confidence 996433222344555555554421 24578999999999999888754
No 137
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.34 E-value=6.2e-12 Score=104.15 Aligned_cols=112 Identities=11% Similarity=0.052 Sum_probs=65.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||||......+... ....+|++++|+|+.+......... .+...+.+. ..+.++|+||+|+
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ilv~nK~Dl 136 (201)
T 2q3h_A 68 VRLQLCDTAGQDEFDKLRPL--------CYTNTDIFLLCFSVVSPSSFQNVSE---KWVPEIRCHCPKAPIILVGTQSDL 136 (201)
T ss_dssp EEEEEEECCCSTTCSSSGGG--------GGTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCSSSCEEEEEECGGG
T ss_pred EEEEEEECCCCHHHHHHhHh--------hcCCCcEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEECHhh
Confidence 34679999997654322211 2246789999999987544322100 022222222 4578999999999
Q ss_pred CCCC----------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPE----------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~----------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+.. ......+......+.++ ...++.+||++|+|++++..++.+
T Consensus 137 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~~~Sa~~g~gi~~l~~~l~~ 191 (201)
T 2q3h_A 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIK--------------AASYIECSALTQKNLKEVFDAAIV 191 (201)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT--------------CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred hhchhhhhhhcccccccCCHHHHHHHHHhcC--------------CcEEEEEecCCCCCHHHHHHHHHH
Confidence 7531 00012233333333322 124688999999999999888754
No 138
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.34 E-value=2.4e-12 Score=108.16 Aligned_cols=196 Identities=13% Similarity=0.079 Sum_probs=93.6
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
..+.+-++++|.+|+|||||+++|+...... .+....++ ...+
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~--~~~~~~~~--~~~~--------------------------------- 51 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP--TVVSQEPL--SAAD--------------------------------- 51 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCC--BCCCSSCE--EETT---------------------------------
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCC--eeeecCce--EEEE---------------------------------
Confidence 3456789999999999999999999642110 00011111 0000
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc-ch--HHHHhhhcccCCchHHHHH-
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK-NL--LFQIDKYRHLSSYPEAIHQ- 184 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~-~~--~~~~~~~~~~~~~~~~~~q- 184 (293)
....++.++||||..........+. ......++++++|+|+. .. ....... +...+..
T Consensus 52 ---------~~~~~~~l~Dt~G~~~~~~~~~~~~----~~~~~~~~~~i~v~D~~~~~~~~~~~~~~-----~~~~~~~~ 113 (218)
T 1nrj_B 52 ---------YDGSGVTLVDFPGHVKLRYKLSDYL----KTRAKFVKGLIFMVDSTVDPKKLTTTAEF-----LVDILSIT 113 (218)
T ss_dssp ---------GGGSSCEEEECCCCGGGTHHHHHHH----HHHGGGEEEEEEEEETTSCTTCCHHHHHH-----HHHHHHHH
T ss_pred ---------eeCceEEEEECCCcHHHHHHHHHHH----HhccccCCEEEEEEECCCChHHHHHHHHH-----HHHHHhcc
Confidence 0224678999999876544443322 11113368899999997 21 1111110 1122221
Q ss_pred -----HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchh--hhhhhhhhh
Q 022736 185 -----IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHV--TRLEGLLEE 257 (293)
Q Consensus 185 -----i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~--~~l~~~l~~ 257 (293)
-..|.++|+||+|+.+..........+...++.+... ....++.+|++++.+. ..+..+++.
T Consensus 114 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~Sa~~~~~~~~~~~~~~l~~ 182 (218)
T 1nrj_B 114 ESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER-----------RKKSLNEVERKINEEDYAENTLDVLQS 182 (218)
T ss_dssp HHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH-----------HHHHHHC--------------CTTC--
T ss_pred cccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH-----------HhccccccccccccccchhhhcccccC
Confidence 1456899999999987654212222233333322110 1146788999988653 333344443
Q ss_pred hccCCCCCCCCCCEEEEEEecCCCCCHHHHHHhhh
Q 022736 258 HQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIA 292 (293)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 292 (293)
...+... .....+..+. .+..|-..+++.+|+.
T Consensus 183 ~~~f~~~-~~~~~v~~~~-~s~~~~~i~~~~~~~~ 215 (218)
T 1nrj_B 183 TDGFKFA-NLEASVVAFE-GSINKRKISQWREWID 215 (218)
T ss_dssp --CCCGG-GSSSCEEEEE-CBTTTTBCHHHHHHHH
T ss_pred CCCcccc-ccCCceEEEe-ccccCCcHHHHHHHHH
Confidence 2222111 1123355444 3344556778888874
No 139
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.33 E-value=5.6e-12 Score=105.91 Aligned_cols=112 Identities=12% Similarity=0.084 Sum_probs=58.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||||.......... ....+|++++|+|+.+......... .+...+.+. ..+.++|+||+|+
T Consensus 82 ~~l~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 150 (214)
T 2j1l_A 82 VHLHIWDTAGQDDYDRLRPL--------FYPDASVLLLCFDVTSPNSFDNIFN---RWYPEVNHFCKKVPIIVVGCKTDL 150 (214)
T ss_dssp EEEEEEEC-----------------------CEEEEEEEEETTCHHHHHHHHH---THHHHHHHHCSSCCEEEEEECGGG
T ss_pred EEEEEEECCCchhhhHHHHH--------HhccCCEEEEEEECcCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence 35789999996554333321 1246788999999987543322100 122222222 4578999999999
Q ss_pred CCCCCC----------cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPERS----------GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~----------~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+.... .....+.....+.+ ....++.+||++|.|++++..++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~SA~~g~gi~el~~~l~~ 205 (214)
T 2j1l_A 151 RKDKSLVNKLRRNGLEPVTYHRGQEMARSV--------------GAVAYLECSARLHDNVHAVFQEAAE 205 (214)
T ss_dssp GSCHHHHHHHHHTTCCCCCHHHHHHHHHHT--------------TCSEEEECBTTTTBSHHHHHHHHHH
T ss_pred hccchhhhhhcccccCcccHHHHHHHHHhc--------------CCCEEEEecCCCCCCHHHHHHHHHH
Confidence 864310 00112222222222 1135788999999999999888754
No 140
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.33 E-value=3.4e-12 Score=114.66 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=86.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
.-|+|+|.+|+|||||+++|+.. ++. ...+ +.+.+...+.
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~----~~~--~~~p--T~~~~~~~~~-------------------------------- 205 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLG----EIV--TTIP--TIGFNVETVE-------------------------------- 205 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSS----CCE--EEEE--ETTEEEEEEE--------------------------------
T ss_pred ceEEEECCCCccHHHHHHHHhCC----CCC--Cccc--ccceEEEEEe--------------------------------
Confidence 35788999999999999999853 211 1111 1222211111
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccC
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFAD 189 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~ 189 (293)
..+..+.|+||||......+... ....+|.+|+|+|+........... .+...+... ..+.
T Consensus 206 -----~~~~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~vilV~D~~~~~s~~~~~~---~~~~~~~~~~~~~~pi 269 (329)
T 3o47_A 206 -----YKNISFTVWDVGGQDKIRPLWRH--------YFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVL 269 (329)
T ss_dssp -----ETTEEEEEEECC-----CCSHHH--------HHTTEEEEEEEEETTCSSSHHHHHH---HHHHHHTCGGGTTCEE
T ss_pred -----cCcEEEEEEECCCCHhHHHHHHH--------HhccCCEEEEEEECCchHHHHHHHH---HHHHHHhhhccCCCeE
Confidence 12346789999995432222211 1245788999999965322111000 011122211 4567
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
++|+||+|+.+... ..++...+...... .....++.+||++|.|++++..++.+
T Consensus 270 ilV~NK~Dl~~~~~----~~~i~~~~~~~~~~----------~~~~~~~~vSAk~g~gi~el~~~l~~ 323 (329)
T 3o47_A 270 LVFANKQDLPNAMN----AAEITDKLGLHSLR----------HRNWYIQATCATSGDGLYEGLDWLSN 323 (329)
T ss_dssp EEEEECTTSTTCCC----HHHHHHHHTCTTCC----------SSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred EEEEECccCCcccC----HHHHHHHhchhhhh----------cCCCEEEEEECCCCcCHHHHHHHHHH
Confidence 99999999987542 34555544322111 01135788999999999999988764
No 141
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.33 E-value=5.7e-12 Score=116.44 Aligned_cols=112 Identities=15% Similarity=0.248 Sum_probs=65.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHHHHhc-cCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D 197 (293)
..+.|+||||..+ +. .........+|.+++|+|+.... .+... ....+..+.. +.++++||+|
T Consensus 81 ~~i~iiDtPGh~~---f~-----~~~~~~~~~~D~~ilVvda~~g~~~~qt~e------~l~~~~~l~~~~iivv~NK~D 146 (408)
T 1s0u_A 81 RRVSFVDSPGHET---LM-----ATMLSGASLMDGAILVIAANEPCPQPQTKE------HLMALEILGIDKIIIVQNKID 146 (408)
T ss_dssp EEEEEEECSSHHH---HH-----HHHHTTCSCCSEEEEEEETTSCSSCHHHHH------HHHHHHHTTCCCEEEEEECTT
T ss_pred cEEEEEECCCHHH---HH-----HHHHHhHhhCCEEEEEEECCCCCCCchhHH------HHHHHHHcCCCeEEEEEEccC
Confidence 4588999999532 11 12234446789999999998532 11111 1223344443 5689999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.+.++.....+++++.++.... ....++++||++|+|+++|.+++.+.
T Consensus 147 l~~~~~~~~~~~~i~~~l~~~~~------------~~~~~i~vSA~~g~gi~~L~~~l~~~ 195 (408)
T 1s0u_A 147 LVDEKQAEENYEQIKEFVKGTIA------------ENAPIIPISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp SSCTTTTTTHHHHHHHHHTTSTT------------TTCCEEEC------CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcCC------------CCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 98765432345556665553321 12357899999999999999998764
No 142
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.32 E-value=3.2e-13 Score=128.24 Aligned_cols=163 Identities=17% Similarity=0.183 Sum_probs=92.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
|.|.++++|.+|+|||||+++|... ++.. ...+|.+..+....+ .+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~----~~~~-~~~~giT~~i~~~~v-------------~~---------------- 48 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKT----QVAA-MEAGGITQHIGAFLV-------------SL---------------- 48 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHH----HHHH-SSSCCBCCCTTSCCB-------------CS----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC----Cccc-ccCCceeEEEeEEEE-------------Ee----------------
Confidence 6789999999999999999999853 1110 011121111111000 00
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i 190 (293)
..+..+.|+||||........ ......+|.+++|+|+.......... ..........|.+
T Consensus 49 -------~~g~~i~~iDTPGhe~f~~~~--------~~~~~~aD~vILVVDa~dg~~~qt~e-----~l~~~~~~~vPiI 108 (537)
T 3izy_P 49 -------PSGEKITFLDTPGHAAFSAMR--------ARGTQVTDIVILVVAADDGVMKQTVE-----SIQHAKDAHVPIV 108 (537)
T ss_dssp -------SCSSCCBCEECSSSCCTTTSB--------BSSSBSBSSCEEECBSSSCCCHHHHH-----HHHHHHTTTCCEE
T ss_pred -------CCCCEEEEEECCChHHHHHHH--------HHHHccCCEEEEEEECCCCccHHHHH-----HHHHHHHcCCcEE
Confidence 123357899999965432211 22335689999999998643322211 2223344456889
Q ss_pred EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+++||+|+.+.... .+...+......+. .++ ....++++||++|.|+++|.+++...
T Consensus 109 VViNKiDl~~~~~~-----~v~~~l~~~~~~~e----~~~--~~~~iv~vSAktG~GI~eLle~I~~l 165 (537)
T 3izy_P 109 LAINKCDKAEADPE-----KVKKELLAYDVVCE----DYG--GDVQAVHVSALTGENMMALAEATIAL 165 (537)
T ss_dssp ECCBSGGGTTTSCC-----SSSSHHHHTTSCCC----CSS--SSEEECCCCSSSSCSSHHHHHHHHHH
T ss_pred EEEecccccccchH-----HHHHHHHhhhhhHH----hcC--CCceEEEEECCCCCCchhHHHHHHHh
Confidence 99999999754321 11122222211110 000 11357899999999999999887653
No 143
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.32 E-value=6.1e-12 Score=116.34 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=68.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHHHHhc-cCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D 197 (293)
..+.||||||..+. . ..+......+|.+++|+|+.... .+... ....+..+.. +.++++||+|
T Consensus 83 ~~i~iiDtPGh~~f---~-----~~~~~~~~~~D~~ilVvda~~g~~~~qt~e------~l~~~~~~~~~~iivviNK~D 148 (410)
T 1kk1_A 83 RRVSFIDAPGHEAL---M-----TTMLAGASLMDGAILVIAANEPCPRPQTRE------HLMALQIIGQKNIIIAQNKIE 148 (410)
T ss_dssp EEEEEEECSSHHHH---H-----HHHHHCGGGCSEEEEEEETTSCSSCHHHHH------HHHHHHHHTCCCEEEEEECGG
T ss_pred cEEEEEECCChHHH---H-----HHHHhhhhhCCEEEEEEECCCCCCChhHHH------HHHHHHHcCCCcEEEEEECcc
Confidence 45889999995321 1 22234456789999999998542 11111 1223344444 4678899999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.+.++.....+++++.++... ....+++++||++|.|+++|.+++...
T Consensus 149 l~~~~~~~~~~~~i~~~l~~~~------------~~~~~~i~vSA~~g~gi~~L~~~l~~~ 197 (410)
T 1kk1_A 149 LVDKEKALENYRQIKEFIEGTV------------AENAPIIPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp GSCHHHHHHHHHHHHHHHTTST------------TTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcC------------cCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 9875421112233333333211 112467899999999999999998764
No 144
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.7e-12 Score=125.59 Aligned_cols=116 Identities=13% Similarity=0.143 Sum_probs=63.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHh--hhcccCCchHHHHHHhcc-CEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID--KYRHLSSYPEAIHQIAFA-DVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~--~~~~~~~~~~~~~qi~~a-~iivlNK~ 196 (293)
+..+.|+||||..+.... .......+|++|+|+|+........ ..............++.+ .++|+||+
T Consensus 244 ~~~~~iiDTPG~e~f~~~--------~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKi 315 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPN--------AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM 315 (611)
T ss_dssp SCEEEEEECCSSSCHHHH--------HTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECT
T ss_pred CceEEEEECCCCcccHHH--------HHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecc
Confidence 457899999998653222 2334467899999999987421100 000000012233344434 78889999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL 251 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l 251 (293)
|+.+..+ ...+.+.+.++.+.... ........++++||++|.|+.++
T Consensus 316 Dl~~~~~--~~~~ei~~~l~~~l~~~------g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 316 DNVDWSQ--QRFEEIKSKLLPYLVDI------GFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTTTCH--HHHHHHHHHHHHHHHHH------TCCGGGCEEEECCTTTCTTTSSC
T ss_pred cccchhH--HHHHHHHHHHHHHHHhh------cccccCccEEeeecccCCCcccc
Confidence 9987321 12333333333221100 00001235789999999999865
No 145
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.30 E-value=8.7e-12 Score=119.11 Aligned_cols=107 Identities=10% Similarity=0.096 Sum_probs=63.1
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh--ccCEEEEeCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVD 197 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~--~a~iivlNK~D 197 (293)
...+.++||||..........+ ....+++++|+|++....... +...+.+.. .+.++|+||+|
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~--------l~~~d~ii~V~D~s~~~~~~~-------~~~~l~~~~~~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFF--------MTRSSVYMLLLDSRTDSNKHY-------WLRHIEKYGGKSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHH--------HHSSEEEEEEECGGGGGGHHH-------HHHHHHHHSSSCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHHHHHHHHH--------ccCCcEEEEEEeCCCchhHHH-------HHHHHHHhCCCCCEEEEEECCC
Confidence 4678999999955433222211 134788999999986532211 222233322 68899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.+..+. ..+.+++....++ ..++.+||++|.|++++..++.+.
T Consensus 162 l~~~~~v--~~~~~~~~~~~~~---------------~~~~~vSA~~g~gi~eL~~~l~~~ 205 (535)
T 3dpu_A 162 ENPSYNI--EQKKINERFPAIE---------------NRFHRISCKNGDGVESIAKSLKSA 205 (535)
T ss_dssp TCTTCCC--CHHHHHHHCGGGT---------------TCEEECCC-----CTTHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHhcC---------------CceEEEecCcccCHHHHHHHHHHH
Confidence 9865432 3344444443322 247889999999999998887653
No 146
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.30 E-value=8.3e-13 Score=119.78 Aligned_cols=116 Identities=14% Similarity=0.157 Sum_probs=63.3
Q ss_pred CCCEEEEecCCCCC------cHH---HHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736 120 RLDHILLETTGLAN------PAP---LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (293)
Q Consensus 120 ~~d~iiidt~G~~~------~~~---~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i 190 (293)
..++.||||||+.. +.. ...... ..++. ...+.+++++|+.......+.. .+...+.....+.+
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~iiL~v~~a~~~~~~~~~~----~i~~~~~~~~~~~i 201 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFVT--KENCLILAVSPANSDLANSDAL----KVAKEVDPQGQRTI 201 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHH-HHHHT--STTEEEEEEEETTSCGGGCHHH----HHHHHHCTTCTTEE
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHH-HHHHc--CCCeEEEEEecCCCccchhHHH----HHHHHhCcCCCceE
Confidence 47899999999765 322 111111 12222 2344577778876422211100 01112222245779
Q ss_pred EEEeCCCCCCCCCCcchHHHHHHHHHh-hcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 191 VILNKVDLVSPERSGDSLDELEKEIHE-INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 191 ivlNK~D~~~~~~~~~~~~~~~~~l~~-lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+||+|+.+.... +...++. ..+ -...+..++++||+++.|++++.+++.+
T Consensus 202 ~V~NK~Dl~~~~~~------~~~~~~~~~~~---------l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 202 GVITKLDLMDEGTD------ARDVLENKLLP---------LRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp EEEECGGGSCTTCC------CHHHHTTCSSC---------CTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred EEeccccccCcchh------HHHHHhCCccc---------ccCCceEEEeCCcccccccccHHHHHHH
Confidence 99999999865421 1122221 111 0123456889999999999999888754
No 147
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.30 E-value=5.8e-12 Score=105.27 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=67.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||||......+... ....+|.+++|+|..+......... .+...+.+. ..|.++|+||+|+
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 125 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPL--------SYRGADIFVLAFSLISKASYENVLK---KWMPELRRFAPNVPIVLVGTKLDL 125 (212)
T ss_dssp EEEEEECCCCCCCCCC--CG--------GGTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCCEEEEEECHHH
T ss_pred EEEEEEECCCcHHHHHHHHh--------hccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEeCHHh
Confidence 45789999997654322211 2246789999999987543322100 122233332 5678999999998
Q ss_pred CCCCCC------cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 199 VSPERS------GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 199 ~~~~~~------~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.+.... .....+.....+.++ ...++.+||++|+|++++..++.+.
T Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (212)
T 2j0v_A 126 RDDKGYLADHTNVITSTQGEELRKQIG--------------AAAYIECSSKTQQNVKAVFDTAIKV 177 (212)
T ss_dssp HTCHHHHHTCSSCCCHHHHHHHHHHHT--------------CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hhCccccccccCCCCHHHHHHHHHHcC--------------CceEEEccCCCCCCHHHHHHHHHHH
Confidence 764210 001233333333332 1246889999999999998887643
No 148
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1e-11 Score=102.10 Aligned_cols=121 Identities=14% Similarity=0.093 Sum_probs=67.0
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+.+-++++|.+|||||||+|+|+..... ..+....++. ..+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~--~~~~~~~~~~--~~~---------------------------------- 87 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVR--PTVVSQEPLS--AAD---------------------------------- 87 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------C----------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC--cccccCCCce--eee----------------------------------
Confidence 35667899999999999999999964211 1111222221 000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc-chHHHHhhhcccCCchHHHHH----
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK-NLLFQIDKYRHLSSYPEAIHQ---- 184 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~-~~~~~~~~~~~~~~~~~~~~q---- 184 (293)
.....+.++||||..........++ ......++++++|+|+. ..... ..... .+......
T Consensus 88 --------~~~~~~~l~Dt~G~~~~~~~~~~~~----~~~~~~~~~~i~v~d~~~~~~~~-~~~~~--~~~~~~~~~~~~ 152 (193)
T 2ged_A 88 --------YDGSGVTLVDFPGHVKLRYKLSDYL----KTRAKFVKGLIFMVDSTVDPKKL-TTTAE--FLVDILSITESS 152 (193)
T ss_dssp --------CCCTTCSEEEETTCCBSSCCHHHHH----HHHGGGEEEEEEEEETTCCHHHH-HHHHH--HHHHHHHHHHHH
T ss_pred --------ecCCeEEEEECCCCchHHHHHHHHH----HhhcccCCEEEEEEECCCCchhH-HHHHH--HHHHHHhhhhhc
Confidence 1234678999999765433332221 11123478899999998 33221 11100 01112211
Q ss_pred --HhccCEEEEeCCCCCCCCC
Q 022736 185 --IAFADVVILNKVDLVSPER 203 (293)
Q Consensus 185 --i~~a~iivlNK~D~~~~~~ 203 (293)
-..|.++|+||+|+.+...
T Consensus 153 ~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 153 CENGIDILIACNKSELFTARP 173 (193)
T ss_dssp STTCCCEEEEEECTTSTTCCC
T ss_pred cccCCCEEEEEEchHhcCCCC
Confidence 1467899999999987654
No 149
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.30 E-value=1.4e-11 Score=118.42 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=71.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~ 200 (293)
+.+.||||||..+...... .....+|.+++|+|+.......... ..........+.++++||+|+.+
T Consensus 73 ~~inliDTPGh~dF~~ev~--------r~l~~aD~aILVVDa~~gv~~qt~~-----~~~~a~~~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVS--------RALAACEGALLLIDASQGIEAQTVA-----NFWKAVEQDLVIIPVINKIDLPS 139 (600)
T ss_dssp EEEEEECCCCSGGGHHHHH--------HHHHTCSEEEEEEETTTBCCHHHHH-----HHHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCcHhHHHHHH--------HHHHhCCEEEEEEECCCCccHHHHH-----HHHHHHHCCCCEEEEEeccCccc
Confidence 4577999999876543221 2235678999999998754322110 11122334668899999999986
Q ss_pred CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736 201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 259 (293)
Q Consensus 201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~ 259 (293)
.. ..++.+.++.... ++..+++.+||++|.|++++.+++.+..
T Consensus 140 a~-----~~~v~~el~~~lg-----------~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 140 AD-----VDRVKKQIEEVLG-----------LDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp CC-----HHHHHHHHHHTSC-----------CCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred cC-----HHHHHHHHHHhhC-----------CCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 53 2444444544321 2234689999999999999999886543
No 150
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.30 E-value=1.7e-11 Score=103.48 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=67.9
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+-|+||+|......+...+. ...+++++|.|..+........ .+...+.+. ..+.+||.||+|
T Consensus 62 v~l~iwDtaGqe~~~~l~~~~~--------~~a~~~ilv~di~~~~Sf~~i~----~~~~~i~~~~~~~~piilVgNK~D 129 (216)
T 4dkx_A 62 IRLQLWDTAGLERFRSLIPSYI--------RDSAAAVVVYDITNVNSFQQTT----KWIDDVRTERGSDVIIMLVGNKTD 129 (216)
T ss_dssp EEEEEECCSCTTTCGGGHHHHH--------TTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHTTSSEEEEEEECTT
T ss_pred EEEEEEECCCchhhhhHHHHHh--------ccccEEEEEeecchhHHHHHHH----HHHHHHHHhcCCCCeEEEEeeccc
Confidence 4567999999876555443322 4578899999988765432210 011122221 235688889999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..++ ..++..+..+.++ ..++.+||++|.|++++-..+.+
T Consensus 130 l~~~r~V--~~~e~~~~a~~~~---------------~~~~e~SAktg~nV~e~F~~i~~ 172 (216)
T 4dkx_A 130 LADKRQV--SIEEGERKAKELN---------------VMFIETSAKAGYNVKQLFRRVAA 172 (216)
T ss_dssp CGGGCCS--CHHHHHHHHHHHT---------------CEEEEEBTTTTBSHHHHHHHHHH
T ss_pred hHhcCcc--cHHHHhhHHHHhC---------------CeeEEEeCCCCcCHHHHHHHHHH
Confidence 8765432 4555566655554 13567999999999988776643
No 151
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.96 E-value=2.3e-13 Score=113.27 Aligned_cols=121 Identities=12% Similarity=0.120 Sum_probs=64.0
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||||.......... ....+|.+++|+|+.+......... .+...+.+. ..+.++|+||+|+
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~iilv~D~~~~~s~~~~~~---~~~~~l~~~~~~~piilv~NK~Dl 146 (204)
T 3th5_A 78 VNLGLWDTAGQEDYDRLRPL--------SYPQTDVFLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDL 146 (204)
Confidence 45669999997554333221 1246788999999876433221100 112222222 5678999999999
Q ss_pred CCCCCCcchHHHHHHH-HHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKE-IHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~-l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+.... .+.+... .+.... ..............++.+||++|+|++++..++.+
T Consensus 147 ~~~~~~---~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 147 RDDKDT---IEKLKEKKLTPITY--PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 764321 1111110 000000 00000111112236789999999999999887643
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.30 E-value=5.6e-12 Score=118.99 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=63.2
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhh--hcccCCchHHHHHHhc-cCEEEEeC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK--YRHLSSYPEAIHQIAF-ADVVILNK 195 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~--~~~~~~~~~~~~qi~~-a~iivlNK 195 (293)
.+..+.|+||||..+..... ......+|.+++|+|+......... .....+.......+.. +.++|+||
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~--------~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK 180 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNA--------IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 180 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHH--------HHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCceEEEEECCCcHHHHHHH--------HHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEEC
Confidence 35678999999986533222 2334568999999999874211000 0000002223344443 47889999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL 251 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l 251 (293)
+|+.+..+ ...+++.+.++.+..... .......++++||++|.|++++
T Consensus 181 ~Dl~~~~~--~~~~~i~~~~~~~l~~~g------~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 181 MDNVDWSQ--QRFEEIKSKLLPYLVDIG------FFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp GGGGTTCH--HHHHHHHHHHHHHHHHHT------CCGGGEEEEECCSSSCTTSSSS
T ss_pred cCcccchH--HHHHHHHHHHHHHHHHcC------CCcccceEEEEeeecCCCcccc
Confidence 99987432 233444444433211000 0001235789999999998753
No 153
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.29 E-value=9.7e-12 Score=102.14 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=63.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH------HhccCEEEEe
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ------IAFADVVILN 194 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q------i~~a~iivlN 194 (293)
..+.|+||+|......+. . .....+.+++|+|..+........ .+...+.+ -..+.++|.|
T Consensus 69 ~~l~i~Dt~G~~~~~~~~-~--------~~~~~~~~ilv~d~~~~~s~~~~~----~~~~~i~~~~~~~~~~~piilv~n 135 (187)
T 3c5c_A 69 VHLRVMDTADLDTPRNCE-R--------YLNWAHAFLVVYSVDSRQSFDSSS----SYLELLALHAKETQRSIPALLLGN 135 (187)
T ss_dssp EEEEEEECCC---CCCTH-H--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred EEEEEEECCCCCcchhHH-H--------HHhhCCEEEEEEECCCHHHHHHHH----HHHHHHHHHhhccCCCCCEEEEEE
Confidence 457799999965432221 1 113578899999998654322110 01112221 1457899999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhccccc-CCcchhhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA-YDATHVTRLEGLLEE 257 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa-~~~~~~~~l~~~l~~ 257 (293)
|+|+.+..+. ..++..+..+.++ ..++.+|| ++|+|++++..++.+
T Consensus 136 K~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~e~Sa~~~g~gv~~lf~~l~~ 182 (187)
T 3c5c_A 136 KLDMAQYRQV--TKAEGVALAGRFG---------------CLFFEVSACLDFEHVQHVFHEAVR 182 (187)
T ss_dssp CGGGGGGCSS--CHHHHHHHHHHHT---------------CEEEECCSSSCSHHHHHHHHHHHH
T ss_pred CcchhhcCcc--CHHHHHHHHHHcC---------------CcEEEEeecCccccHHHHHHHHHH
Confidence 9999754332 3345555555443 14578999 899999999887754
No 154
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.29 E-value=2.5e-12 Score=117.31 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=89.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
++.++++|.+|+|||||+++|+.. . +.-+.+. ..+.
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~~~----g---iTi~~~~------~~~~------------------------------- 56 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLGKK----G---TSSDITM------YNND------------------------------- 56 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTSEE----E---EESSSEE------EEEC-------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHhC----C---EEEEeeE------EEEe-------------------------------
Confidence 448999999999999999999821 0 1111110 0000
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC-E
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-V 190 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~-i 190 (293)
..+..+.|+||||..+..... ......+|.+++|+| ......... ++.....+...+. +
T Consensus 57 ------~~~~~i~iiDtPGh~~f~~~~--------~~~~~~aD~ailVvd-~~g~~~qt~-----e~~~~~~~~~i~~~i 116 (370)
T 2elf_A 57 ------KEGRNMVFVDAHSYPKTLKSL--------ITALNISDIAVLCIP-PQGLDAHTG-----ECIIALDLLGFKHGI 116 (370)
T ss_dssp ------SSSSEEEEEECTTTTTCHHHH--------HHHHHTCSEEEEEEC-TTCCCHHHH-----HHHHHHHHTTCCEEE
T ss_pred ------cCCeEEEEEECCChHHHHHHH--------HHHHHHCCEEEEEEc-CCCCcHHHH-----HHHHHHHHcCCCeEE
Confidence 123458999999987643222 223367899999999 543221111 0233345556677 9
Q ss_pred EEEe-CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcc--cccCC---cchhhhhhhhhhh
Q 022736 191 VILN-KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN--CRAYD---ATHVTRLEGLLEE 257 (293)
Q Consensus 191 ivlN-K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~--~sa~~---~~~~~~l~~~l~~ 257 (293)
+++| |+|+ +++ ..+.+.+.++.+.... .....++++ +||++ ++|+++|.+++.+
T Consensus 117 vvvNNK~Dl-~~~----~~~~~~~~i~~~l~~~--------~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~ 176 (370)
T 2elf_A 117 IALTRSDST-HMH----AIDELKAKLKVITSGT--------VLQDWECISLNTNKSAKNPFEGVDELKARINE 176 (370)
T ss_dssp EEECCGGGS-CHH----HHHHHHHHHHHHTTTS--------TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHH
T ss_pred EEEEeccCC-CHH----HHHHHHHHHHHHHHhc--------CCCceEEEecccccccCcCCCCHHHHHHHHHh
Confidence 9999 9999 532 2233334444332211 011235788 99999 9999988877653
No 155
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.28 E-value=3.8e-13 Score=111.60 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=57.2
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEe
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN 194 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlN 194 (293)
..+.|+||||........ ......+|.+++|+|+.+...... ...++..+ ..+.++|+|
T Consensus 82 ~~~~i~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~~p~ilv~n 146 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTIT--------SSYYRGAHGIIVVYDVTDQESFNN-------VKQWLQEIDRYASENVNKLLVGN 146 (199)
T ss_dssp EEEEEECCTTCTTCCCCS--------CC--CCCSEEEECC-CCCSHHHHH-------HHHHHHHHHSCC-CCSEEEEC-C
T ss_pred EEEEEEECCCcHhHHHHH--------HHHhhcCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhccCCCCEEEEEE
Confidence 457899999965432211 122346789999999987543221 11222222 356799999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|+|+.+.... .........+.++ ..++.+||++|+|++++..++.+.
T Consensus 147 K~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~vSA~~g~gv~~l~~~l~~~ 193 (199)
T 3l0i_B 147 KCDLTTKKVV--DYTTAKEFADSLG---------------IPFLETSAKNATNVEQSFMTMAAE 193 (199)
T ss_dssp CSSCC--CCC--CSCC-CHHHHTTT---------------CCBCCCCC---HHHHHHHHHHTTT
T ss_pred CccCCccccC--CHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHHH
Confidence 9999765321 1111122222211 247889999999999999888643
No 156
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.28 E-value=1.8e-12 Score=125.02 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=55.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHH--HhhhcccCCchHHHHHHhcc-CEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIAFA-DVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~qi~~a-~iivlNK~ 196 (293)
+..+.||||||..+. ..........+|++|+|||+...... ......-.........++.+ .++|+||+
T Consensus 254 ~~~i~iiDTPGh~~f--------~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKi 325 (592)
T 3mca_A 254 KKIYEIGDAPGHRDF--------ISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKL 325 (592)
T ss_dssp -----CCEEESSSEE--------EEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECG
T ss_pred CeEEEEEECCChHHH--------HHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecc
Confidence 456889999997642 12233445678999999999853100 00000000122344555665 67799999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhc-CCCEEEEeecCCCCchhhcccccCCcchhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEIN-SLAHVIRSVRCQVDLSEVLNCRAYDATHVT 249 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~ln-p~a~i~~~~~~~~~~~~i~~~sa~~~~~~~ 249 (293)
|+.+..+ .....+...++.+. ....+ ......++++||++|.|+.
T Consensus 326 Dl~~~~~--~~~~~i~~el~~~l~~~~g~------~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 326 DLMSWSE--DRFQEIKNIVSDFLIKMVGF------KTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGGTTCH--HHHHHHHHHHHHHHTTTSCC------CGGGEEEEEECSSSCSSSC
T ss_pred ccccccH--HHHHHHHHHHHHHHHHhhCC------CccceEEEEEecccCcccc
Confidence 9986321 23344444454433 11100 0011257899999999987
No 157
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.28 E-value=1.8e-12 Score=115.26 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=68.1
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~ 113 (293)
-++++|.+|+|||||+|+++.. ......+.++.+.+++...+.-
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~----~~~~~~~~~~~Ti~~~~~~~~~-------------------------------- 48 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN----YSAFDTRRLGATIDVEHSHLRF-------------------------------- 48 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC----CCTGGGGGCCCCCSEEEEEEEE--------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC----CCCccccCcCCccceEEEEEEe--------------------------------
Confidence 3678999999999999999853 1112233444433332221110
Q ss_pred HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hcc
Q 022736 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFA 188 (293)
Q Consensus 114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a 188 (293)
.++..+.|+||||.... .+.+...........+|++++|+|+.+........ .+..++.++ ..|
T Consensus 49 ----~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~----~~~~~l~~l~~~~~~~p 117 (307)
T 3r7w_A 49 ----LGNMTLNLWDCGGQDVF---MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIE----IFAKALKQLRKYSPDAK 117 (307)
T ss_dssp ----TTTEEEEEEEECCSHHH---HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHH----HHHHHHHHHHHHCTTCE
T ss_pred ----CCceEEEEEECCCcHHH---hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHH----HHHHHHHHHHHhCCCCe
Confidence 12346789999997532 11110010111124688999999998654221110 012223332 468
Q ss_pred CEEEEeCCCCCCC
Q 022736 189 DVVILNKVDLVSP 201 (293)
Q Consensus 189 ~iivlNK~D~~~~ 201 (293)
.++|+||+|+.+.
T Consensus 118 iilv~NK~Dl~~~ 130 (307)
T 3r7w_A 118 IFVLLHKMDLVQL 130 (307)
T ss_dssp EEEEEECGGGSCH
T ss_pred EEEEEecccccch
Confidence 8999999999874
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.27 E-value=8e-12 Score=116.37 Aligned_cols=108 Identities=18% Similarity=0.109 Sum_probs=62.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL 198 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~ 198 (293)
+..+.|+||||..+..... ......+|.+++|+|+......... .+.....++..+ .++|+||+|+
T Consensus 103 ~~~~~iiDtpGh~~f~~~~--------~~~~~~aD~~ilVvDa~~g~~~qt~-----~~l~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNM--------ATGASTCDLAIILVDARYGVQTQTR-----RHSYIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp SEEEEEEECCCSGGGHHHH--------HHHHTTCSEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCEEEEEEECTTT
T ss_pred CceEEEEECCChHHHHHHH--------HHHHhhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEEcCcC
Confidence 3468999999976532222 1233678999999999864322111 022333444544 6889999999
Q ss_pred CCCCCC--cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736 199 VSPERS--GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR 250 (293)
Q Consensus 199 ~~~~~~--~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~ 250 (293)
.+.++. .....++.+.++.++.. .....++++||++|.|+++
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~g~~----------~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGIAFK----------PTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCC----------CSEEEEEECCTTTCTTTSS
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCC----------ccCceEEEEeccCCCCccc
Confidence 864310 00122333333333210 1123578899999999876
No 159
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.27 E-value=3.4e-12 Score=122.89 Aligned_cols=124 Identities=17% Similarity=0.100 Sum_probs=68.0
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~ 200 (293)
+.+.|+||||..+..... ......+|.+|+|+|+.......... ....+.....|.++++||+|+.+
T Consensus 70 ~~i~liDTPGhe~F~~~~--------~r~~~~aD~aILVvDa~~Gv~~qT~e-----~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLR--------KRGGALADLAILIVDINEGFKPQTQE-----ALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp CEEEEECCCTTSCCTTSB--------CSSSBSCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTCCEEEEEECGGGST
T ss_pred CCEEEEECCCcHHHHHHH--------HHHHhhCCEEEEEEECCCCccHhHHH-----HHHHHHHcCCeEEEEeccccccc
Confidence 358999999976542211 12235689999999998743221110 12233445678999999999975
Q ss_pred CCCC--------------cchHH-------HHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 201 PERS--------------GDSLD-------ELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 201 ~~~~--------------~~~~~-------~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.... ..... ++...+....-....+..........+++++||++|.|+++|.+++..
T Consensus 137 ~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~ 214 (594)
T 1g7s_A 137 GWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMG 214 (594)
T ss_dssp TCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHh
Confidence 3210 00011 112222211110000000000112346889999999999999988754
No 160
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.27 E-value=1e-11 Score=121.86 Aligned_cols=116 Identities=14% Similarity=0.154 Sum_probs=69.9
Q ss_pred CCCEEEEecCCCCC------cH---HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736 120 RLDHILLETTGLAN------PA---PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (293)
Q Consensus 120 ~~d~iiidt~G~~~------~~---~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i 190 (293)
.++++||||||+.. |. ......+ ..++. ...|.+++|+|+.......+.. .+...+.....+.+
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv-~~yi~--~~aDlIL~VVDAs~~~~~~d~l----~ll~~L~~~g~pvI 221 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFVT--KENCLILAVSPANSDLANSDAL----KIAKEVDPQGQRTI 221 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHH-HHHHT--STTEEEEEEEETTSCSSSCHHH----HHHHHHCTTCSSEE
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHH-HHHHh--cCCcEEEEEEcCCCCcchhHHH----HHHHHHHhcCCCEE
Confidence 46799999999876 22 1222221 22222 4678899999997643211110 01223333456899
Q ss_pred EEEeCCCCCCCCCCcchHHHHHHHHH-hhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 191 VILNKVDLVSPERSGDSLDELEKEIH-EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 191 ivlNK~D~~~~~~~~~~~~~~~~~l~-~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+||+|+++.... ... .++ ...+ -..++..++++||.+|.|+++|.+.+.+
T Consensus 222 lVlNKiDlv~~~~~---~~~---il~~~~~~---------l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 222 GVITKLDLMDEGTD---ARD---VLENKLLP---------LRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp EEEECTTSSCTTCC---SHH---HHTTCSSC---------CSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred EEEeCcccCCcchh---hHH---HHHHHhhh---------hhccCCceEEecccccccchhHHHHHHH
Confidence 99999999976531 111 111 1111 0124567899999999999999888865
No 161
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.26 E-value=1.5e-11 Score=103.36 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=67.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||+|......+... ....+|++|+|+|..+........ ..+...+.+. ..+.++|.||+|+
T Consensus 75 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~---~~~~~~i~~~~~~~piilv~nK~Dl 143 (214)
T 3q3j_B 75 VELSLWDTSGSPYYDNVRPL--------CYSDSDAVLLCFDISRPETVDSAL---KKWRTEILDYCPSTRVLLIGCKTDL 143 (214)
T ss_dssp EEEEEEEECCSGGGTTTGGG--------GCTTCSEEEEEEETTCTHHHHHHH---THHHHHHHHHCTTSEEEEEEECGGG
T ss_pred EEEEEEECCCCHhHHHHHHH--------HcCCCeEEEEEEECcCHHHHHHHH---HHHHHHHHHhCCCCCEEEEEEChhh
Confidence 45789999996543222211 224688999999998754432211 0122222222 4578999999999
Q ss_pred CCCC----------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch-hhhhhhhhhhh
Q 022736 199 VSPE----------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH-VTRLEGLLEEH 258 (293)
Q Consensus 199 ~~~~----------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~-~~~l~~~l~~~ 258 (293)
.++. .+...........+.++ ...++.+||++|.| ++++..++...
T Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~e~SA~~g~g~v~~lf~~l~~~ 200 (214)
T 3q3j_B 144 RTDLSTLMELSHQKQAPISYEQGCAIAKQLG--------------AEIYLEGSAFTSEKSIHSIFRTASML 200 (214)
T ss_dssp GGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT--------------CSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhcccccCccCHHHHHHHHHHcC--------------CCEEEEeccCCCcccHHHHHHHHHHH
Confidence 7530 01123344444444432 12467899999998 99998887543
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.26 E-value=6.8e-12 Score=115.80 Aligned_cols=106 Identities=20% Similarity=0.136 Sum_probs=61.3
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD 197 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D 197 (293)
.+.++.|+||||..+..... ......+|.+++|+|+......... ++...+.+...+ .++++||+|
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~--------~~~~~~aD~~ilVvda~~g~~~qt~-----~~l~~~~~~~ip~iivviNK~D 139 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNM--------ITGAAQMDGAILVVSAADGPMPQTR-----EHILLARQVGVPYIVVFMNKVD 139 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHH--------HHHHTTCSSEEEEEETTTCCCHHHH-----HHHHHHHHTTCCCEEEEEECGG
T ss_pred CCeEEEEEECCChHHHHHHH--------HHHHHHCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCEEEEEEECcc
Confidence 34678999999977532222 2233578999999999764322111 123344455667 468999999
Q ss_pred CCCCCCC-cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch
Q 022736 198 LVSPERS-GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH 247 (293)
Q Consensus 198 ~~~~~~~-~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~ 247 (293)
+.+..+. .....++.+.++.++.. -...+++++||++|.|
T Consensus 140 l~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 140 MVDDPELLDLVEMEVRDLLNQYEFP----------GDEVPVIRGSALLALE 180 (405)
T ss_dssp GCCCHHHHHHHHHHHHHHHHHTTSC----------TTTSCEEECCHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHhccc----------ccCCCEEEccHHHhhh
Confidence 9853210 00112344444443310 0113578899999987
No 163
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=2e-11 Score=102.71 Aligned_cols=109 Identities=15% Similarity=0.038 Sum_probs=60.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~ 196 (293)
..++++||+|......... .. .....+++++|+|.++........ . +...+.+ -..|.++|.||+
T Consensus 87 ~~l~~~Dt~g~~~~~~~l~-----~~--~~~~a~~~ilVydvt~~~sf~~~~-~---~~~~l~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 87 ATIILLDMWENKGENEWLH-----DH--CMQVGDAYLIVYSITDRASFEKAS-E---LRIQLRRARQTEDIPIILVGNKS 155 (211)
T ss_dssp EEEEEECCTTTTHHHHHHH-----HC--CCCCCSEEEEEEETTCHHHHHHHH-H---HHHHHHTSGGGTTSCEEEEEECT
T ss_pred eEEEEeecCCCcchhhhHH-----HH--HHhhCCEEEEEEECCCHHHHHHHH-H---HHHHHHHHhCCCCCcEEEEEECh
Confidence 3467999999764211111 11 112357788888877543221110 0 1111111 135789999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+..+. ..++.....+..+ ..++.+||++|+|++++..++.+
T Consensus 156 DL~~~r~v--~~~e~~~~a~~~~---------------~~~~e~SAk~g~~v~elf~~l~~ 199 (211)
T 2g3y_A 156 DLVRCREV--SVSEGRACAVVFD---------------CKFIETSAAVQHNVKELFEGIVR 199 (211)
T ss_dssp TCGGGCCS--CHHHHHHHHHHHT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHhcCceE--eHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 99754322 2222222222221 13578999999999999888754
No 164
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.25 E-value=6.1e-12 Score=115.66 Aligned_cols=110 Identities=17% Similarity=0.040 Sum_probs=44.0
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhc--cCcceeeccchhHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVEL--ANGCICCTVKHSLVQALE 112 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l--~~gcicc~~~~~l~~~l~ 112 (293)
++|+|.+|+|||||+|+|+ +.+ +.+.+.++++.......+.... ....+.+..+ ++.+.|.
T Consensus 3 I~ivG~pnvGKSTL~n~L~----~~~-~~~~~~p~tT~~~~~g~~~~~~-~~~~~~l~~~~~p~~~~~~----------- 65 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAAT----LVD-VEIANYPFTTIEANVGVTYAIT-DHPCKELGCSPNPQNYEYR----------- 65 (397)
T ss_dssp EEEEECTTSSHHHHHHHHH----C---------------CCEEEEEEEE-ECSCSSSCCSCCCSSSCEE-----------
T ss_pred EEEECCCCCCHHHHHHHHH----CCC-CcccCCCCcccCCceEEEeecc-CCchHHhhhhccccccccc-----------
Confidence 6889999999999999999 555 5566666653322211100000 0000000000 0000000
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccch
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL 165 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~ 165 (293)
......++.|+||||+.......+.+ ...++.....+|.+++|+|+...
T Consensus 66 ---~~~~~~~i~lvDtpG~~~~a~~~~~l-~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 66 ---NGLALIPVKMVDVAGLVPGAHEGRGL-GNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ---TTEEEEEEEEEECC----------------CCCSSTTCSEEEEEEETTCC
T ss_pred ---CCcceEEEEEEECCCcccchhhhhhH-HHHHHHHHhcCCEEEEEEecccc
Confidence 00012358899999986533222211 13334556789999999999763
No 165
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.25 E-value=2.1e-11 Score=99.61 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=64.9
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||||......+.. ......+.+++|+|..+......... .+...+.+. ..|.++|.||+|+
T Consensus 55 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~i~~~~~~~piilv~nK~Dl 123 (184)
T 1m7b_A 55 IELSLWDTSGSPYYDNVRP--------LSYPDSDAVLICFDISRPETLDSVLK---KWKGEIQEFCPNTKMLLVGCKSDL 123 (184)
T ss_dssp EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCEEEEEEECGGG
T ss_pred EEEEEEECCCChhhhhhHH--------hhcCCCcEEEEEEECCCHHHHHHHHH---HHHHHHHHHCCCCCEEEEEEcchh
Confidence 4578999999643322211 12246788999999987543222100 022222222 4578999999999
Q ss_pred CCCC----------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccC-Ccchhhhhhhhhhh
Q 022736 199 VSPE----------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY-DATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~----------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~-~~~~~~~l~~~l~~ 257 (293)
.+.. .+....++.....+.++ ...++.+||+ ++.|++++..++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~gi~~l~~~i~~ 179 (184)
T 1m7b_A 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIG--------------AATYIECSALQSENSVRDIFHVATL 179 (184)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT--------------CSEEEECBTTTBHHHHHHHHHHHHH
T ss_pred hcchhhHhhhhhcccCCCCHHHHHHHHHHcC--------------CcEEEEeeecCCCcCHHHHHHHHHH
Confidence 7531 00112333444444332 1246789998 68999999887754
No 166
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.24 E-value=4.9e-11 Score=99.63 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=64.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||||......+.. .....++++++|+|..+......... .+...+.+. ..+.++|.||+|+
T Consensus 76 ~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~ilv~D~~~~~s~~~~~~---~~~~~i~~~~~~~piilv~nK~Dl 144 (205)
T 1gwn_A 76 IELSLWDTSGSPYYDNVRP--------LSYPDSDAVLICFDISRPETLDSVLK---KWKGEIQEFCPNTKMLLVGCKSDL 144 (205)
T ss_dssp EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCEEEEEEECGGG
T ss_pred EEEEEEeCCCcHhhhHHHH--------hhccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHHCCCCCEEEEEechhh
Confidence 4578999999644322211 12246788999999987543222100 122222222 4578999999999
Q ss_pred CCCC----------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccC-Ccchhhhhhhhhhh
Q 022736 199 VSPE----------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY-DATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~----------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~-~~~~~~~l~~~l~~ 257 (293)
.+.. .+....++.....+.++ ...++.+||+ ++.|++++..++.+
T Consensus 145 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~e~SAk~~~~gv~~lf~~l~~ 200 (205)
T 1gwn_A 145 RTDVSTLVELSNHRQTPVSYDQGANMAKQIG--------------AATYIECSALQSENSVRDIFHVATL 200 (205)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT--------------CSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhcccccCCCCHHHHHHHHHHcC--------------CCEEEEeeeccCCcCHHHHHHHHHH
Confidence 7531 00012233444443332 1246789998 68999998887754
No 167
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.24 E-value=1.1e-11 Score=106.07 Aligned_cols=133 Identities=14% Similarity=0.115 Sum_probs=64.5
Q ss_pred CCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchh
Q 022736 27 NDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS 106 (293)
Q Consensus 27 ~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (293)
....+.+-|+|+|.+|+|||||+|+|+.. +. .....++. +++...... ..
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~----~~-~~~~~~~~--~~t~~~~~~---------~~-------------- 73 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGR----KV-FHSGTAAK--SITKKCEKR---------SS-------------- 73 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTS----CC-SCC---------CCSCEEE---------EE--------------
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCC----Cc-CccCCCCC--ceeeeEEEE---------EE--------------
Confidence 33455677999999999999999999953 22 01111110 111110000 00
Q ss_pred HHHHHHHHHhhcCCCCEEEEecCCCCCcHH----HHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736 107 LVQALEQLVQRKERLDHILLETTGLANPAP----LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (293)
Q Consensus 107 l~~~l~~l~~~~~~~d~iiidt~G~~~~~~----~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (293)
...+..+.|+||||+.+... ..+.+. .........++++++|+|+..+....... +..+...+
T Consensus 74 ----------~~~~~~i~liDTpG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~d~~~~~~~~~~~--l~~~~~~~ 140 (239)
T 3lxx_A 74 ----------SWKETELVVVDTPGIFDTEVPNAETSKEII-RCILLTSPGPHALLLVVPLGRYTEEEHKA--TEKILKMF 140 (239)
T ss_dssp ----------EETTEEEEEEECCSCC-----CHHHHHHHH-HHHHHTTTCCSEEEEEEETTCCSSHHHHH--HHHHHHHH
T ss_pred ----------EeCCceEEEEECCCccCCCCCHHHHHHHHH-HHHHhcCCCCcEEEEEeeCCCCCHHHHHH--HHHHHHHh
Confidence 01234678999999876421 111111 11122234678999999986543321110 00011111
Q ss_pred -HHHhccCEEEEeCCCCCCCC
Q 022736 183 -HQIAFADVVILNKVDLVSPE 202 (293)
Q Consensus 183 -~qi~~a~iivlNK~D~~~~~ 202 (293)
.....+.++|+||+|+++..
T Consensus 141 ~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 141 GERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHGGGEEEEEECGGGC---
T ss_pred hhhccceEEEEEeCCccCCcc
Confidence 12334889999999998654
No 168
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.24 E-value=2.8e-11 Score=113.39 Aligned_cols=114 Identities=10% Similarity=0.101 Sum_probs=63.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhh--hcccCCchHHHHHHhcc-CEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK--YRHLSSYPEAIHQIAFA-DVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~--~~~~~~~~~~~~qi~~a-~iivlNK~ 196 (293)
+..+.|+||||..+..... ......+|.+|+|+|+......... ............+...+ .++++||+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~--------~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~ 155 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNM--------ITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKM 155 (458)
T ss_dssp SEEEEEEECCCCTTHHHHH--------HHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECG
T ss_pred CceEEEEECCCcHHHHHHH--------HhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcc
Confidence 4578999999976432222 2344678999999999875422000 00000012233444555 67889999
Q ss_pred CCCCCCC--CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736 197 DLVSPER--SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL 251 (293)
Q Consensus 197 D~~~~~~--~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l 251 (293)
|+.+..+ ......++...++.+.-. .....++++||++|.|+.++
T Consensus 156 Dl~~~~~~~~~~i~~~~~~~l~~~g~~----------~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 156 DSVKWDESRFQEIVKETSNFIKKVGYN----------PKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCC----------GGGCCEEECCTTTCBTTTBC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHcCCC----------ccCceEEEeecccCcCcccc
Confidence 9984221 001122333334433210 00135788999999998644
No 169
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.23 E-value=2.4e-11 Score=112.15 Aligned_cols=162 Identities=20% Similarity=0.217 Sum_probs=91.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
+.++|+|++|||||||++.|... +. .+...+.++.......+. +
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~----~~-~i~~~~ftTl~p~~G~V~-------------~------------------ 201 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRA----HP-KIAPYPFTTLSPNLGVVE-------------V------------------ 201 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSS----CC-EECCCTTCSSCCEEEEEE-------------C------------------
T ss_pred CEEEEECCCCCcHHHHHHHHHcC----Cc-cccCcccceecceeeEEE-------------e------------------
Confidence 45899999999999999999843 22 223333221111100000 0
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc-chHHHHhhhcccCCchHHH-HHHhccCE
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK-NLLFQIDKYRHLSSYPEAI-HQIAFADV 190 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~-~~~~~~~~~~~~~~~~~~~-~qi~~a~i 190 (293)
.....+.++|+||+.+.......+ ....+....+++.++.++|.+ .....+..... +...+. .....|.+
T Consensus 202 -----~~~~~~~l~DtpGli~~a~~~~~L-~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~--el~~la~aL~~~P~I 273 (416)
T 1udx_A 202 -----SEEERFTLADIPGIIEGASEGKGL-GLEFLRHIARTRVLLYVLDAADEPLKTLETLRK--EVGAYDPALLRRPSL 273 (416)
T ss_dssp -----SSSCEEEEEECCCCCCCGGGSCCS-CHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHH--HHHHHCHHHHHSCEE
T ss_pred -----cCcceEEEEeccccccchhhhhhh-hHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHH--HHHHHhHHhhcCCEE
Confidence 012457899999986532211111 111233345688899999985 22222211100 000010 12357899
Q ss_pred EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+||+|+.... .+..+.+.++..+ ..++.+||+++++++++..++.+
T Consensus 274 LVlNKlDl~~~~----~~~~l~~~l~~~g---------------~~vi~iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 274 VALNKVDLLEEE----AVKALADALAREG---------------LAVLPVSALTGAGLPALKEALHA 321 (416)
T ss_dssp EEEECCTTSCHH----HHHHHHHHHHTTT---------------SCEEECCTTTCTTHHHHHHHHHH
T ss_pred EEEECCChhhHH----HHHHHHHHHHhcC---------------CeEEEEECCCccCHHHHHHHHHH
Confidence 999999987641 2344444443211 24688999999999999888764
No 170
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.22 E-value=3.5e-11 Score=115.87 Aligned_cols=126 Identities=19% Similarity=0.213 Sum_probs=76.0
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~ 200 (293)
..+.||||||..+...... .....+|.+++|+|+.......... ..........+.++++||+|+.+
T Consensus 71 ~~l~liDTPGh~dF~~ev~--------~~l~~aD~aILVVDa~~gv~~qt~~-----~~~~~~~~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 71 YQLNFIDTPGHVDFSYEVS--------RSLAACEGALLVVDAGQGVEAQTLA-----NCYTAMEMDLEVVPVLNKIDLPA 137 (599)
T ss_dssp EEEEEEECCCCGGGHHHHH--------HHHHHCSEEEEEEETTTCCCTHHHH-----HHHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCchHHHHHHH--------HHHHHCCEEEEEEECCCCCCHHHHH-----HHHHHHHCCCCEEEeeeccCccc
Confidence 4578999999876543322 2235679999999997643221110 01112234568899999999986
Q ss_pred CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEE
Q 022736 201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSI 276 (293)
Q Consensus 201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 276 (293)
.. ..++.+.++.... ++..+++.+||++|.|++++.+++.+....|. ...+.+++.+.+
T Consensus 138 a~-----~~~v~~ei~~~lg-----------~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~-~~~~~p~~alI~ 196 (599)
T 3cb4_D 138 AD-----PERVAEEIEDIVG-----------IDATDAVRCSAKTGVGVQDVLERLVRDIPPPE-GDPEGPLQALII 196 (599)
T ss_dssp CC-----HHHHHHHHHHHTC-----------CCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC-CCTTSCCEEEEE
T ss_pred cc-----HHHHHHHHHHHhC-----------CCcceEEEeecccCCCchhHHHHHhhcCCCcc-ccccCCceeeee
Confidence 53 2344444443321 12246889999999999999998866543232 123344554443
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.21 E-value=2.5e-11 Score=114.32 Aligned_cols=161 Identities=20% Similarity=0.220 Sum_probs=90.8
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC-CCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE-FGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d-~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
.|.|.++++|..|+|||||+++|.... + ...+ .|.+..+....+ .
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~----v--~~~e~~GIT~~i~~~~v-------------~--------------- 47 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTK----V--ASGEAGGITQHIGAYHV-------------E--------------- 47 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHH----H--SBTTBCCCCCCSSCCCC-------------C---------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCC----C--ccccCCCeeEeEEEEEE-------------E---------------
Confidence 478999999999999999999998531 0 0011 111010000000 0
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
..+..+.|+||||..+.... .......+|.+++|+|+......... +..........|
T Consensus 48 ---------~~~~~i~~iDTPGhe~f~~~--------~~~~~~~aD~aILVVda~~g~~~qT~-----e~l~~~~~~~vP 105 (501)
T 1zo1_I 48 ---------TENGMITFLDTPGHAAFTSM--------RARGAQATDIVVLVVAADDGVMPQTI-----EAIQHAKAAQVP 105 (501)
T ss_dssp ---------TTSSCCCEECCCTTTCCTTS--------BCSSSBSCSSEEEEEETTTBSCTTTH-----HHHHHHHHTTCC
T ss_pred ---------ECCEEEEEEECCCcHHHHHH--------HHHHHhhCCEEEEEeecccCccHHHH-----HHHHHHHhcCce
Confidence 12345789999997553221 12334568999999999764321110 012223344678
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.++++||+|+.+.... ++...+.... .+....+ ....++++||++|.|+++|.+++..
T Consensus 106 iIVviNKiDl~~~~~~-----~v~~~l~~~~----~~~~~~~--~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 106 VVVAVNKIDKPEADPD-----RVKNELSQYG----ILPEEWG--GESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp EEEEEECSSSSTTCCC-----CTTCCCCCCC----CCTTCCS--SSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred EEEEEEeccccccCHH-----HHHHHHHHhh----hhHHHhC--CCccEEEEeeeeccCcchhhhhhhh
Confidence 8999999999764210 1111111000 0000000 1135789999999999999988854
No 172
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.21 E-value=2.6e-10 Score=105.62 Aligned_cols=149 Identities=15% Similarity=0.215 Sum_probs=84.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
+..+++++|++||||||++..|... ..|.+++++..|+.. .+....+-..+ + ...--|..+....+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R-~aa~eqL~~~~-------~--~~gvpv~~~~~~~dp~ 168 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR-PGAYHQLRQLL-------D--RYHIEVFGNPQEKDAI 168 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS-THHHHHHHHHH-------G--GGTCEEECCTTCCCHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc-hhHHHHHHHHH-------H--hcCCcEEecCCCCCHH
Confidence 5679999999999999999999863 568999999998764 21111110000 0 0000011111122222
Q ss_pred ----HHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736 109 ----QALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183 (293)
Q Consensus 109 ----~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ 183 (293)
..+.... ..++|++||||+|... .......+. .+......+.+++|+|+........ ....+.
T Consensus 169 ~i~~~al~~a~--~~~~DvVIIDTaGrl~~d~~lm~el~---~i~~~~~pd~vlLVvDA~~gq~a~~-------~a~~f~ 236 (443)
T 3dm5_A 169 KLAKEGVDYFK--SKGVDIIIVDTAGRHKEDKALIEEMK---QISNVIHPHEVILVIDGTIGQQAYN-------QALAFK 236 (443)
T ss_dssp HHHHHHHHHHH--HTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGGGGHHH-------HHHHHH
T ss_pred HHHHHHHHHHH--hCCCCEEEEECCCcccchHHHHHHHH---HHHHhhcCceEEEEEeCCCchhHHH-------HHHHHH
Confidence 2233221 3569999999999554 333332221 1223345688999999987533221 122333
Q ss_pred HHhccCEEEEeCCCCCCC
Q 022736 184 QIAFADVVILNKVDLVSP 201 (293)
Q Consensus 184 qi~~a~iivlNK~D~~~~ 201 (293)
+......+|+||+|....
T Consensus 237 ~~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 237 EATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp HSCTTEEEEEECCSSCSS
T ss_pred hhCCCeEEEEECCCCccc
Confidence 333456799999998753
No 173
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.21 E-value=2.4e-11 Score=113.23 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=64.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHH-h-hhcccCCchHHHHHHhc-cCEEEEeC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQI-D-KYRHLSSYPEAIHQIAF-ADVVILNK 195 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~-~-~~~~~~~~~~~~~qi~~-a~iivlNK 195 (293)
.+..+.|+||||..+..... ......+|.+|+|+|+....... . ......+......++.. +.++++||
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~--------~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK 153 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNM--------ITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK 153 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHH--------HHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred CCeEEEEEECCCcHHHHHHH--------HhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEc
Confidence 35679999999987643332 23346789999999998642110 0 00000011223344454 46899999
Q ss_pred CCCCCCCCC----cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736 196 VDLVSPERS----GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL 251 (293)
Q Consensus 196 ~D~~~~~~~----~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l 251 (293)
+|+.+.... ....+++++.++.++-. .....++++||++|+|+.++
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFN----------TNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCC----------CTTCEEEECBTTTTBTTTBC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcCCC----------cCCceEEEeecccCcccccc
Confidence 999873210 01123344444433210 00134788999999998643
No 174
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.19 E-value=1e-11 Score=121.89 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=42.6
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~ 200 (293)
.++.||||||+.+..... .........+|.+++|+|+.......+... +...+.....+.++|+||+|+.+
T Consensus 174 ~~l~LiDTPGl~~~~~~~-----~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~----l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARN-----ELSLGYVNNCHAILFVMRASQPCTLGERRY----LENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCH-----HHHTHHHHSSSEEEEEEETTSTTCHHHHHH----HHHHTTTSCCCEEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHH-----HHHHHHHHhCCEEEEEEeCCCccchhHHHH----HHHHHHhhCCCEEEEEECccccc
Confidence 468999999976532211 111223356899999999976533222100 11122223457899999999875
Q ss_pred C
Q 022736 201 P 201 (293)
Q Consensus 201 ~ 201 (293)
.
T Consensus 245 ~ 245 (695)
T 2j69_A 245 E 245 (695)
T ss_dssp G
T ss_pred c
Confidence 4
No 175
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.18 E-value=6.1e-11 Score=116.41 Aligned_cols=174 Identities=16% Similarity=0.115 Sum_probs=90.3
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccC-CCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~-~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l 107 (293)
..+++.++|+|.+|+|||||+|+|+... .-.+.+-+. .+. ...|...... . ..+.+...+.++.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~--~~~-~~~D~~~~e~-~------~giTi~~~~~~~~----- 71 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETH--EGA-SQMDWMEQEQ-D------RGITITSAATTAA----- 71 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-----------------------------------CCSEEEEE-----
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCcccccccc--CCc-eecccchhhh-h------cCceEeeeeEEEE-----
Confidence 3468889999999999999999999521 011111111 111 0011100000 0 0011111112221
Q ss_pred HHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 108 ~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
..+.++.||||||..+..... ......+|.+++|+|+.......... ....+.+...
T Consensus 72 ----------~~~~~i~liDTPG~~df~~~~--------~~~l~~aD~~llVvDa~~g~~~~~~~-----~~~~~~~~~~ 128 (693)
T 2xex_A 72 ----------WEGHRVNIIDTPGHVDFTVEV--------ERSLRVLDGAVTVLDAQSGVEPQTET-----VWRQATTYGV 128 (693)
T ss_dssp ----------ETTEEEEEECCCCCSSCCHHH--------HHHHHHCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTC
T ss_pred ----------ECCeeEEEEECcCCcchHHHH--------HHHHHHCCEEEEEECCCCCCcHHHHH-----HHHHHHHcCC
Confidence 124578999999987643322 12234589999999997643322211 1223344567
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.++++||+|+...+ ...+.+.++....... ....+++|+ +.++..+.+++.+
T Consensus 129 p~ilviNK~Dl~~~~-----~~~~~~~l~~~l~~~~----------~~~~ipisa--~~~~~~l~d~l~~ 181 (693)
T 2xex_A 129 PRIVFVNKMDKLGAN-----FEYSVSTLHDRLQANA----------APIQLPIGA--EDEFEAIIDLVEM 181 (693)
T ss_dssp CEEEEEECTTSTTCC-----HHHHHHHHHHHHCCCE----------EESEEEECC--GGGCCEEEETTTT
T ss_pred CEEEEEECCCccccc-----hHHHHHHHHHHhCCCc----------eeEEeeccc--CCCcceeeeeecc
Confidence 899999999998753 3444444444322111 123456665 6666666666644
No 176
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.18 E-value=3.3e-11 Score=99.62 Aligned_cols=118 Identities=11% Similarity=0.079 Sum_probs=61.9
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH-HHHhhhcccCCchHHHHHH-----hccCEEEE
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQI-----AFADVVIL 193 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~qi-----~~a~iivl 193 (293)
...+.|+||+|......... . .......++++|+|+|+.... ..... +..++.++ ..+.++|.
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~----~-~~~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~l~~~~~~~~~~piilv~ 136 (196)
T 3llu_A 68 FVNFQIWDFPGQMDFFDPTF----D-YEMIFRGTGALIYVIDAQDDYMEALTR------LHITVSKAYKVNPDMNFEVFI 136 (196)
T ss_dssp SCCEEEEECCSSCCTTCTTC----C-HHHHHHTCSEEEEEEETTSCCHHHHHH------HHHHHHHHHHHCTTCEEEEEE
T ss_pred eeEEEEEECCCCHHHHhhhh----h-cccccccCCEEEEEEECCCchHHHHHH------HHHHHHHHHhcCCCCcEEEEE
Confidence 46789999999654322210 0 001124578999999998641 11111 22333333 45789999
Q ss_pred eCCCCCCCCCCcchHHHHHHH-HHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 194 NKVDLVSPERSGDSLDELEKE-IHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 194 NK~D~~~~~~~~~~~~~~~~~-l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
||+|+.+.+........+... .+.+... ...... ..++.+||++ +|++++...+.
T Consensus 137 nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~-~~~~e~Sa~~-~~v~~~f~~l~ 192 (196)
T 3llu_A 137 HKVDGLSDDHKIETQRDIHQRANDDLADA------GLEKLH-LSFYLTSIYD-HSIFEAFSKVV 192 (196)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHHT------TCTTSC-EEEEEECTTS-THHHHHHHHHH
T ss_pred eccccCchhhhhHHHhHHHHHHHHHHHHh------hhhcCC-cceEEEEech-hhHHHHHHHHH
Confidence 999998743110001111111 1111100 000011 2467899999 99998877664
No 177
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.18 E-value=4.3e-11 Score=106.71 Aligned_cols=113 Identities=13% Similarity=0.070 Sum_probs=66.0
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||||......... .....+|++++|+|+........... .+...+.+. ..+.++|+||+|+
T Consensus 203 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ilv~nK~Dl 271 (332)
T 2wkq_A 203 VNLGLWDTAGLEDYDRLRP--------LSYPQTDVFLICFSLVSPASFHHVRA---KWYPEVRHHCPNTPIILVGTKLDL 271 (332)
T ss_dssp EEEEEEEECCCGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTSCEEEEEECHHH
T ss_pred EEEEEEeCCCchhhhHHHH--------HhccCCCEEEEEEeCCCHHHHHHHHH---HHHHHHHhhCCCCcEEEEEEchhc
Confidence 3456999999754322221 12246889999999987554322110 122223332 5688999999998
Q ss_pred CCCCC----------CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 199 VSPER----------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 199 ~~~~~----------~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.+... .........+..+.. ....++.+||++|+|++++..++.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEI--------------GAVKYLECSALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccccchhhhccccccccccHHHHHHHHHHc--------------CCcEEEEecCCCCcCHHHHHHHHHHH
Confidence 75421 001122222222222 11357889999999999998887643
No 178
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.17 E-value=3e-11 Score=111.22 Aligned_cols=116 Identities=19% Similarity=0.131 Sum_probs=66.4
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC-EEEEeCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVD 197 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~-iivlNK~D 197 (293)
.+.++.|+||||..+... ........+|.+++|+|+.......... ....+.+...+. ++++||+|
T Consensus 64 ~~~~~~iiDtpG~~~f~~--------~~~~~~~~aD~~ilVvda~~g~~~qt~e-----~l~~~~~~~vp~iivviNK~D 130 (397)
T 1d2e_A 64 AARHYAHTDCPGHADYVK--------NMITGTAPLDGCILVVAANDGPMPQTRE-----HLLLARQIGVEHVVVYVNKAD 130 (397)
T ss_dssp SSCEEEEEECSSHHHHHH--------HHHHTSSCCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCCEEEEEECGG
T ss_pred CCeEEEEEECCChHHHHH--------HHHhhHhhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCeEEEEEECcc
Confidence 346789999999653211 1123345789999999998643221110 223344556674 68999999
Q ss_pred CCCCCCC-cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch----------hhhhhhhhhh
Q 022736 198 LVSPERS-GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH----------VTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~-~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~----------~~~l~~~l~~ 257 (293)
+.+..+. .....++++.++.++-. -...+++++||++|.+ +.+|.+++.+
T Consensus 131 l~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~ 191 (397)
T 1d2e_A 131 AVQDSEMVELVELEIRELLTEFGYK----------GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT 191 (397)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHTTSC----------TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCC----------cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHH
Confidence 9853210 01112344444443210 0013578899998764 6667776654
No 179
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.17 E-value=7e-11 Score=97.56 Aligned_cols=108 Identities=15% Similarity=0.059 Sum_probs=57.6
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD 197 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~D 197 (293)
.++++||+|...... .+...+ ....+++++|+|.++........ .+...+.+. ..+.++|.||+|
T Consensus 57 ~l~~~Dt~~~~~~~~----~~~~~~---~~~~~~~i~v~dv~~~~s~~~~~----~~~~~l~~~~~~~~~piilV~NK~D 125 (192)
T 2cjw_A 57 TIILLDMWENKGENE----WLHDHC---MQVGDAYLIVYSITDRASFEKAS----ELRIQLRRARQTEDIPIILVGNKSD 125 (192)
T ss_dssp EEEEECCCCC----C----TTGGGH---HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHTTTSCCCEEEEEECTT
T ss_pred EEEEEEeccCcchhh----hHHHhh---cccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhhCCCCCeEEEEEechh
Confidence 467899999654211 111111 12357788888887543321110 011122222 356789999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+...... ............+ ..++.+||++|.|++++..++.+
T Consensus 126 l~~~r~v--~~~~~~~~a~~~~---------------~~~~e~SA~~g~~v~~lf~~l~~ 168 (192)
T 2cjw_A 126 LVRXREV--SVSEGRAXAVVFD---------------XKFIETSAAVQHNVKELFEGIVR 168 (192)
T ss_dssp CGGGCCS--CHHHHHHHHHHTT---------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred hhccccc--cHHHHHHHHHHhC---------------CceEEeccccCCCHHHHHHHHHH
Confidence 8754322 2222222212111 13578999999999998887754
No 180
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.16 E-value=1.9e-11 Score=111.24 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=75.6
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
....+-|+|+|+||+|||||+|+|+ +.+ +.+.+.+++|.......+.
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt----~~~-~~v~~~pftT~~~~~g~~~---------------------------- 115 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLT----GTE-SEAAEYEFTTLVTVPGVIR---------------------------- 115 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHH----SBC-CCGGGTCSSCCCEEEEEEE----------------------------
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHh----CCC-CcccCCCCceeeeeeEEEE----------------------------
Confidence 3456789999999999999999999 444 3346666663322111111
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHH-HHHHhc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA-IHQIAF 187 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~-~~qi~~ 187 (293)
..+.++.|+||||+.+........ ....+.....+|.+++|+|+............. ...+ ..-...
T Consensus 116 ---------~~~~~i~l~D~pGl~~~a~~~~~~-g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~E--L~~~~~~l~~k 183 (376)
T 4a9a_A 116 ---------YKGAKIQMLDLPGIIDGAKDGRGR-GKQVIAVARTCNLLFIILDVNKPLHHKQIIEKE--LEGVGIRLNKT 183 (376)
T ss_dssp ---------ETTEEEEEEECGGGCCC-----CH-HHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHH--HHHTTEEETCC
T ss_pred ---------eCCcEEEEEeCCCccCCchhhhHH-HHHHHHHHHhcCccccccccCccHHHHHHHHHH--HHHhhHhhccC
Confidence 234568899999987654433222 234466667899999999998765443321000 0000 011234
Q ss_pred cCEEEEeCCCC
Q 022736 188 ADVVILNKVDL 198 (293)
Q Consensus 188 a~iivlNK~D~ 198 (293)
+-.+++||.|.
T Consensus 184 ~~~i~~nK~d~ 194 (376)
T 4a9a_A 184 PPDILIKKKEK 194 (376)
T ss_dssp CCCEEEEECSS
T ss_pred ChhhhhhHhhh
Confidence 67899999996
No 181
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.16 E-value=2.9e-11 Score=98.89 Aligned_cols=113 Identities=11% Similarity=0.088 Sum_probs=58.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEe
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILN 194 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlN 194 (293)
...+.++||+|......+.. .++ ...+.+++|+|.+........ ...++.++ ..+.++|.|
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~-----~~~---~~~~~~i~v~d~~~~~~s~~~------~~~~~~~~~~~~~~~piilv~n 120 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYSTHP-----HFM---TQRALYLAVYDLSKGQAEVDA------MKPWLFNIKARASSSPVILVGT 120 (184)
T ss_dssp -CEEEEEEECSHHHHHTTSH-----HHH---HHSEEEEEEEEGGGCHHHHHT------HHHHHHHHHHHCTTCEEEEEEE
T ss_pred ceEEEEEecCCCHHHHHhhH-----HHc---cCCcEEEEEEeCCcchhHHHH------HHHHHHHHHhhCCCCcEEEEEE
Confidence 35678999999543221111 111 235678889998764322221 12222221 356777889
Q ss_pred CCCCCCCCCCcchHHH-HHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc-hhhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDE-LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT-HVTRLEGLLEE 257 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~-~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~-~~~~l~~~l~~ 257 (293)
|+|+.+.. .... .....+.+... .+......++.+||+++. ++++|...+.+
T Consensus 121 K~Dl~~~~----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~ 174 (184)
T 2zej_A 121 HLDVSDEK----QRKACMSKITKELLNK-------RGFPAIRDYHFVNATEESDALAKLRKTIIN 174 (184)
T ss_dssp CGGGCCHH----HHHHHHHHHHHHTTTC-------TTSCEEEEEEECCTTSCCHHHHHHHHHHHH
T ss_pred CCCcccch----hhHHHHHHHHHHHHHh-------cCCcchhheEEEecccCchhHHHHHHHHHH
Confidence 99987542 1111 11112222111 000001246889999995 99888877654
No 182
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.14 E-value=1.1e-10 Score=108.39 Aligned_cols=194 Identities=15% Similarity=0.116 Sum_probs=102.9
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceee--ccch
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC--TVKH 105 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc--~~~~ 105 (293)
.+..+++++|++|+||||+++.|... ..|+++.++..|+.....++. +... .....-.++.+ +.++
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~q--L~~~--------~~~~gv~v~~~~~~~~d 166 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQ--LKQL--------AEKIHVPIYGDETRTKS 166 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGS--SHHH--------HHHSSCCEECCSSSCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHH--HHHh--------hhccCcceEecCCCCCC
Confidence 34568999999999999999999864 347899999988753111110 0000 00000000001 1111
Q ss_pred --hH-HHHHHHHHhhcCCCCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHH
Q 022736 106 --SL-VQALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181 (293)
Q Consensus 106 --~l-~~~l~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~ 181 (293)
++ ...+. ...++|++||||||..... .+..... .+......|.+++|+|+....... ..
T Consensus 167 p~~i~~~~l~----~~~~~D~vIIDT~G~~~~~~~l~~~l~---~i~~~~~~d~vllVvda~~g~~~~----------~~ 229 (432)
T 2v3c_C 167 PVDIVKEGME----KFKKADVLIIDTAGRHKEEKGLLEEMK---QIKEITNPDEIILVIDGTIGQQAG----------IQ 229 (432)
T ss_dssp SSTTHHHHHH----TTSSCSEEEEECCCSCSSHHHHHHHHH---HTTSSSCCSEEEEEEEGGGGGGHH----------HH
T ss_pred HHHHHHHHHH----HhhCCCEEEEcCCCCccccHHHHHHHH---HHHHHhcCcceeEEeeccccHHHH----------HH
Confidence 12 22222 2267899999999976542 2222211 123334688899999997653211 11
Q ss_pred HHHHh--c-c-CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeec---CCCCchhhcccccCCcch-hhhhhh
Q 022736 182 IHQIA--F-A-DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR---CQVDLSEVLNCRAYDATH-VTRLEG 253 (293)
Q Consensus 182 ~~qi~--~-a-~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~---~~~~~~~i~~~sa~~~~~-~~~l~~ 253 (293)
..... . + ..+|+||+|..... ..+........-....+.... ...++.+...+|+..|.| +..|.+
T Consensus 230 ~~~~~~~~~~i~gvVlnK~D~~~~~------g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e 303 (432)
T 2v3c_C 230 AKAFKEAVGEIGSIIVTKLDGSAKG------GGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLE 303 (432)
T ss_dssp HHHHHTTSCSCEEEEEECSSSCSTT------HHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSS
T ss_pred HHHHhhcccCCeEEEEeCCCCccch------HHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHH
Confidence 22222 2 3 78999999986432 222333333322222221111 111345556678888877 666655
Q ss_pred hhh
Q 022736 254 LLE 256 (293)
Q Consensus 254 ~l~ 256 (293)
.++
T Consensus 304 ~~~ 306 (432)
T 2v3c_C 304 KAE 306 (432)
T ss_dssp TTT
T ss_pred HHH
Confidence 553
No 183
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.12 E-value=4.9e-11 Score=112.04 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=58.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhh--hcccCCchHHHHHHhcc-CEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK--YRHLSSYPEAIHQIAFA-DVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~--~~~~~~~~~~~~qi~~a-~iivlNK~ 196 (293)
+..+.|+||||..+... ........+|.+|+|+|+......... ...-.+......+.+.+ .++++||+
T Consensus 120 ~~~~~iiDtPGh~~f~~--------~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~ 191 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVT--------NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKM 191 (467)
T ss_dssp SEEEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECT
T ss_pred CeEEEEEECCCcHHHHH--------HHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECc
Confidence 35689999999754321 123344678999999999875421000 00000112233445566 68899999
Q ss_pred CCCCCC--C--CcchHHHHHHHHHhh-cCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736 197 DLVSPE--R--SGDSLDELEKEIHEI-NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL 251 (293)
Q Consensus 197 D~~~~~--~--~~~~~~~~~~~l~~l-np~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l 251 (293)
|+.+.+ + ......++...++.+ .-.. -....++++||++|.|+.++
T Consensus 192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~---------~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNS---------KTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCH---------HHHEEEEECBTTTTBTTSSC
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHhcCCCc---------cCCceEEecccccccccccc
Confidence 996532 1 001122344444433 1000 00124788999999998754
No 184
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.12 E-value=2.9e-10 Score=94.13 Aligned_cols=107 Identities=15% Similarity=0.085 Sum_probs=60.4
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVDL 198 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D~ 198 (293)
.+.++||+|..........+ ....+.+++|+|........... .+...+.+ ...+.++++||+|+
T Consensus 55 ~~~i~Dt~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~i~~v~nK~Dl 122 (199)
T 2f9l_A 55 KAQIWDTAGQERYRRITSAY--------YRGAVGALLVYDIAKHLTYENVE----RWLKELRDHADSNIVIMLVGNKSDL 122 (199)
T ss_dssp EEEEEECSSGGGTTCCCHHH--------HTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEECCCchhhhhhhHHH--------HhcCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCeEEEEEECccc
Confidence 46689999954321111111 12467789999987654322110 01111111 13467899999999
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+.... .....+...+. |.. .++.+|++++.+++++..++.+
T Consensus 123 ~~~~~~--~~~~a~~l~~~--~~~-------------~~~d~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 123 RHLRAV--PTDEARAFAEK--NNL-------------SFIETSALDSTNVEEAFKNILT 164 (199)
T ss_dssp GGGCCS--CHHHHHHHHHH--TTC-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccCc--CHHHHHHHHHH--cCC-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence 754321 23344444432 222 2456899999999988887754
No 185
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.12 E-value=1.1e-09 Score=104.31 Aligned_cols=71 Identities=17% Similarity=0.111 Sum_probs=46.0
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
.+..+.||||||..+..... ......+|.+|+|+|+.......... +.....+...+.++++||+|+
T Consensus 80 ~~~~i~liDTPG~~df~~~~--------~~~l~~aD~~IlVvDa~~g~~~~t~~-----~~~~~~~~~ipiivviNK~Dl 146 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDT--------YRTLTAVDCCLMVIDAAKGVEDRTRK-----LMEVTRLRDTPILTFMNKLDR 146 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHH--------HHGGGGCSEEEEEEETTTCSCHHHHH-----HHHHHTTTTCCEEEEEECTTS
T ss_pred CCeEEEEEECCCChhHHHHH--------HHHHHHCCEEEEEEeCCccchHHHHH-----HHHHHHHcCCCEEEEEcCcCC
Confidence 34678999999987643322 22335789999999998643222110 122333346788999999999
Q ss_pred CCCC
Q 022736 199 VSPE 202 (293)
Q Consensus 199 ~~~~ 202 (293)
....
T Consensus 147 ~~~~ 150 (529)
T 2h5e_A 147 DIRD 150 (529)
T ss_dssp CCSC
T ss_pred cccc
Confidence 8654
No 186
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.08 E-value=3.9e-10 Score=110.69 Aligned_cols=147 Identities=16% Similarity=0.136 Sum_probs=77.8
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccC-CCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~-~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
.+++.++|+|.+|+|||||+++|+... .-.+.+-+ +.|. ...|...... . ..+.+...+.++.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v--~~~~-~~~d~~~~E~-~------~giTi~~~~~~~~------ 73 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGA-ATMDFMEQER-E------RGITITAAVTTCF------ 73 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC--------------------------------------CCEEEEE------
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCccccee--cCCc-eeccCchhhh-h------cccccccceEEEE------
Confidence 468889999999999999999998531 00011111 1111 0111100000 0 0011112222221
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
..+.++.||||||..+...... .....+|.+|+|+|+.......... ......+...+
T Consensus 74 ---------~~~~~i~liDTPG~~df~~~~~--------~~l~~aD~~ilVvDa~~g~~~~t~~-----~~~~~~~~~~p 131 (691)
T 1dar_A 74 ---------WKDHRINIIDTPGHVDFTIEVE--------RSMRVLDGAIVVFDSSQGVEPQSET-----VWRQAEKYKVP 131 (691)
T ss_dssp ---------ETTEEEEEECCCSSTTCHHHHH--------HHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCC
T ss_pred ---------ECCeEEEEEECcCccchHHHHH--------HHHHHCCEEEEEEECCCCcchhhHH-----HHHHHHHcCCC
Confidence 1245789999999876443332 2234689999999998643322210 12223445678
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEIN 219 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln 219 (293)
.++++||+|+...+ ...+.+.++...
T Consensus 132 ~ivviNKiD~~~~~-----~~~~~~~l~~~l 157 (691)
T 1dar_A 132 RIAFANKMDKTGAD-----LWLVIRTMQERL 157 (691)
T ss_dssp EEEEEECTTSTTCC-----HHHHHHHHHHTT
T ss_pred EEEEEECCCcccCC-----HHHHHHHHHHHh
Confidence 99999999998653 355555555443
No 187
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.07 E-value=1.4e-10 Score=101.09 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=66.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+...++++|.+|+|||||+|+|+. .+...+....+++. .... ..+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~----~~~~~~~~~~~~t~----~~~~-----------~~~---------------- 82 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIG----ERVVSISPFQSEGP----RPVM-----------VSR---------------- 82 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHT----SCCSCCCSSSCCCS----SCEE-----------EEE----------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC----CCcccccCCCCcce----eeEE-----------EEE----------------
Confidence 456788999999999999999994 33222233333211 0000 000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHH----HHHhhhcchhhccccccccEEEEEcccch-HHHHhhhcccCCchHHHHHH
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAP----LASVLWLDDQLESAVRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQI 185 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~----~~~~~~~~~~~~~~~~~d~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~qi 185 (293)
...+..+.|+||||+.+... ....+ ..++ ....+|++++|+|.... ....+. .+...+.+.
T Consensus 83 ------~~~~~~l~iiDTpG~~~~~~~~~~~~~~i--~~~~-~~~~~d~il~v~~~d~~~~~~~~~-----~~~~~l~~~ 148 (270)
T 1h65_A 83 ------SRAGFTLNIIDTPGLIEGGYINDMALNII--KSFL-LDKTIDVLLYVDRLDAYRVDNLDK-----LVAKAITDS 148 (270)
T ss_dssp ------EETTEEEEEEECCCSEETTEECHHHHHHH--HHHT-TTCEECEEEEEEESSCCCCCHHHH-----HHHHHHHHH
T ss_pred ------eeCCeEEEEEECCCCCCCccchHHHHHHH--HHHh-hcCCCCEEEEEEeCCCCcCCHHHH-----HHHHHHHHH
Confidence 01345689999999865421 11111 0111 12368899999765431 111110 012222221
Q ss_pred -h----ccCEEEEeCCCCCCCC
Q 022736 186 -A----FADVVILNKVDLVSPE 202 (293)
Q Consensus 186 -~----~a~iivlNK~D~~~~~ 202 (293)
. .+.++|+||+|+.+.+
T Consensus 149 ~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 149 FGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HCGGGGGGEEEEEECCSCCCGG
T ss_pred hCcccccCEEEEEECcccCCcC
Confidence 1 4789999999997654
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.06 E-value=3.3e-10 Score=102.85 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.8
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
..+|.|+|+|.+|||||||+|+|+..
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCC
Confidence 47899999999999999999999963
No 189
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.03 E-value=2.4e-10 Score=99.16 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+...|+++|..|+|||||+|+|+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456688999999999999999994
No 190
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.03 E-value=3.3e-09 Score=87.25 Aligned_cols=107 Identities=16% Similarity=0.110 Sum_probs=60.1
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVDL 198 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D~ 198 (293)
.+.++||+|......+... .....+.+++|+|......... .. .+...+.+ ...+.++++||+|+
T Consensus 79 ~~~i~Dt~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~-~~---~~~~~~~~~~~~~~~i~~v~nK~Dl 146 (191)
T 1oix_A 79 KAQIWDTAGLERYRAITSA--------YYRGAVGALLVYDIAKHLTYEN-VE---RWLKELRDHADSNIVIMLVGNKSDL 146 (191)
T ss_dssp EEEEEEECSCCSSSCCCHH--------HHTTCCEEEEEEETTCHHHHHT-HH---HHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEECCCCcchhhhhHH--------HhhcCCEEEEEEECcCHHHHHH-HH---HHHHHHHHhcCCCCcEEEEEECccc
Confidence 3457999997543221111 1123567899999876543211 00 01111111 23467899999998
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+.... .....++..+. |.. .++.+|++++.+++++.+++.+
T Consensus 147 ~~~~~~--~~~~a~~l~~~--~~~-------------~~ld~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 147 RHLRAV--PTDEARAFAEK--NGL-------------SFIETSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGCCS--CHHHHHHHHHH--TTC-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccc--CHHHHHHHHHH--cCC-------------EEEEEeCCCCCCHHHHHHHHHH
Confidence 754321 23344444432 222 2456899999999999888754
No 191
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.02 E-value=4.8e-10 Score=103.50 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=33.9
Q ss_pred eEEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+.+.+++++|+....+....+.+ +|+|++|||||||+|.|+..
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I-~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL-MVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE-EEECCTTSSHHHHHHHHTTC
T ss_pred cEEEEecceeECCEEEecCCCEEE-EEECCCCCcHHHHHHHHhCC
Confidence 488999999998877777776665 88999999999999999953
No 192
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=99.00 E-value=5.6e-10 Score=90.31 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=60.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCcccc------chhhhhcCCCCcchhhhhhccCcceeec
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGV------ERAMINEGEGGALVEEWVELANGCICCT 102 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~------d~~~~~~~~~~~~~~~~~~l~~gcicc~ 102 (293)
++++++|+|++|||||||+++|++. ..|.+++++.++++. ..+ |...+... |. ..++...++|.||.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~-~diD~~~g~D~~r~~~a--Ga--~~v~~~s~~~~~~~ 77 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG-GEPARPEGVDSVRHERA--GA--VATAVEGDGLLQLH 77 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------------C--SEEEEEETTEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC-cccccCCChhHHHHHhc--CC--CeEEeccCCEEEEE
Confidence 5789999999999999999999875 458899999999874 323 33333321 11 23455678998887
Q ss_pred cc--hhHHHHHHHHHhhcCCCCEEEEecCCC
Q 022736 103 VK--HSLVQALEQLVQRKERLDHILLETTGL 131 (293)
Q Consensus 103 ~~--~~l~~~l~~l~~~~~~~d~iiidt~G~ 131 (293)
.+ +.-.+.+..++... ++|++|||+.|-
T Consensus 78 ~~~~~~~~~~~~~ll~~~-~~D~vlVEg~~~ 107 (169)
T 1xjc_A 78 LRRPLWRLDDVLALYAPL-RLDLVLVEGYKQ 107 (169)
T ss_dssp ECCSCCCHHHHHHHHGGG-CCSEEEEECCTT
T ss_pred ecccccchHHHHHHHHhc-CCCEEEEeCCCC
Confidence 63 11123344445444 799999999984
No 193
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.98 E-value=1e-09 Score=111.30 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=68.0
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD 197 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D 197 (293)
.+..+.||||||..+... ........+|.+|+|+|+......... ++...+.+...+ .++++||+|
T Consensus 357 ~~~kI~IIDTPGHedF~~--------~mi~gas~AD~aILVVDAtdGv~~QTr-----EhL~ll~~lgIP~IIVVINKiD 423 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVK--------NMITGAAQMDGAILVVAATDGPMPQTR-----EHILLGRQVGVPYIIVFLNKCD 423 (1289)
T ss_dssp SSCEEEEEECCCHHHHHH--------HHHHTSCCCSEEEEEEETTTCSCTTHH-----HHHHHHHHHTCSCEEEEEECCT
T ss_pred CCEEEEEEECCChHHHHH--------HHHHHHhhCCEEEEEEcCCccCcHHHH-----HHHHHHHHcCCCeEEEEEeecc
Confidence 346789999999654221 122344578999999999864321110 122344556677 478999999
Q ss_pred CCCCCCC-cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCc--------chhhhhhhhhhh
Q 022736 198 LVSPERS-GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA--------THVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~-~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~--------~~~~~l~~~l~~ 257 (293)
+.+..++ .....++.+.++.++.. -...+++++||++| +|+.+|.+++..
T Consensus 424 Lv~d~e~le~i~eEi~elLk~~G~~----------~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 424 MVDDEELLELVEMEVRELLSQYDFP----------GDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTSC----------TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHhcccc----------ccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 9863210 00113344445444310 01135789999999 567777777755
No 194
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.97 E-value=4e-09 Score=97.58 Aligned_cols=149 Identities=19% Similarity=0.255 Sum_probs=81.5
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeec--cch
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT--VKH 105 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~--~~~ 105 (293)
.+..+++++|++||||||++..|... ..|.++.++..|... .+.-..+-..+ . ..|.-+.. ...
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r-~~a~eqL~~~~----------~-~~gv~~~~~~~~~ 162 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR-PAAYDQLLQLG----------N-QIGVQVYGEPNNQ 162 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC-HHHHHHHHHHH----------H-TTTCCEECCTTCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc-hhHHHHHHHHH----------H-hcCCceeeccccC
Confidence 35678999999999999999999763 458899999988653 11100000000 0 00111111 011
Q ss_pred hHHHHHHHHHhh--cCCCCEEEEecCCCCC---cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH
Q 022736 106 SLVQALEQLVQR--KERLDHILLETTGLAN---PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (293)
Q Consensus 106 ~l~~~l~~l~~~--~~~~d~iiidt~G~~~---~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (293)
+........+.. ..++|++||||||... .......+. . +......+.+++|+|+........ ...
T Consensus 163 dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~--~-i~~~~~pd~vlLVlDa~~gq~a~~-------~a~ 232 (433)
T 3kl4_A 163 NPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMK--E-MYDVLKPDDVILVIDASIGQKAYD-------LAS 232 (433)
T ss_dssp CHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHH--H-HHHHHCCSEEEEEEEGGGGGGGHH-------HHH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHH--H-HHHhhCCcceEEEEeCccchHHHH-------HHH
Confidence 111111111111 2479999999999533 222222211 1 112234578999999986532211 122
Q ss_pred HHHHHhccCEEEEeCCCCCC
Q 022736 181 AIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 181 ~~~qi~~a~iivlNK~D~~~ 200 (293)
.+.+.-....+|+||+|...
T Consensus 233 ~f~~~~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 233 RFHQASPIGSVIITKMDGTA 252 (433)
T ss_dssp HHHHHCSSEEEEEECGGGCS
T ss_pred HHhcccCCcEEEEecccccc
Confidence 33333356899999999764
No 195
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.96 E-value=1.6e-10 Score=104.97 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=28.7
Q ss_pred EEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+.+.++...+..+.......+. ++|+|.+|+|||||+|+|..
T Consensus 18 v~~~~l~~~~~~k~~~~~~~~~-I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 18 VGFANLPNQVHRKSVKKGFEFT-LMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp ---CCHHHHHHTHHHHHCCEEC-EEECCCTTSCHHHHHHHHTT
T ss_pred EEeccchHHhCCeeecCCCCEE-EEEEcCCCCCHHHHHHHHhC
Confidence 5667777776665444443333 57899999999999999974
No 196
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.96 E-value=6.7e-09 Score=102.08 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=76.4
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~-~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
.+++.++|+|..|+|||||+++|+.... -.+.. .-+.|. ...|...... +..+.+...+.+|...+.-
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g--~v~~g~-~~~D~~~~E~-------~rgiTi~~~~~~~~~~~~~- 76 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG--EVHDGA-ATMDWMEQEQ-------ERGITITSAATTAFWSGMA- 76 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--ccCCCc-eeecChhhHH-------hcCceeeeceEEEEECCcc-
Confidence 4577899999999999999999985310 00000 001121 1111111100 0011222333333322110
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
......++.||||||..+...... .....+|.+|+|+|+.......... ......+...+
T Consensus 77 -------~~~~~~~i~liDTPG~~df~~~~~--------~~l~~aD~aIlVvDa~~gv~~qt~~-----~~~~~~~~~ip 136 (704)
T 2rdo_7 77 -------KQYEPHRINIIDTPGHVDFTIEVE--------RSMRVLDGAVMVYCAVGGVQPQSET-----VWRQANKYKVP 136 (704)
T ss_pred -------ccCCceeEEEEeCCCccchHHHHH--------HHHHHCCEEEEEEeCCCCCcHHHHH-----HHHHHHHcCCC
Confidence 012347889999999876433221 2234679999999998654322110 11223334578
Q ss_pred CEEEEeCCCCCCCC
Q 022736 189 DVVILNKVDLVSPE 202 (293)
Q Consensus 189 ~iivlNK~D~~~~~ 202 (293)
.++++||+|+...+
T Consensus 137 ~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 137 RIAFVNKMDRMGAN 150 (704)
T ss_pred EEEEEeCCCccccc
Confidence 89999999987653
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.94 E-value=1.5e-09 Score=96.11 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=20.1
Q ss_pred ccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHc
Q 022736 15 DETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
++++++|+.+..+....+.+ +|+|++|||||||+|.|..
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I-~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL-MVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp ----------------CEEE-EEEEETTSSHHHHHHHHHC
T ss_pred CCCcceECCEEEEcCCCEEE-EEECCCCCCHHHHHHHHhC
Confidence 36677888877777766665 8899999999999999883
No 198
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.93 E-value=1.6e-09 Score=93.49 Aligned_cols=84 Identities=14% Similarity=0.046 Sum_probs=49.3
Q ss_pred ccccEEEEEcccch--HHHHhhhcccCCchHHH-H---HHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEE
Q 022736 152 RLDSIITVVDAKNL--LFQIDKYRHLSSYPEAI-H---QIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI 225 (293)
Q Consensus 152 ~~d~vi~vvDa~~~--~~~~~~~~~~~~~~~~~-~---qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~ 225 (293)
.+|++|+|+|+++. ..... .. .+...+ . ....+.++|.||+|+.+.. ..+...+..+... .
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~-~~---~~l~~i~~~~~~~~~piilV~NK~Dl~~~~----~v~~~~~~~~~~~-~---- 228 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDD-QL---KFVSNLYNQLAKTKKPIVVVLTKCDEGVER----YIRDAHTFALSKK-N---- 228 (255)
T ss_dssp ECCEEEEEEECBC----CHHH-HH---HHHHHHHHHHHHTTCCEEEEEECGGGBCHH----HHHHHHHHHHTSS-S----
T ss_pred cCCEEEEEEECCCCchhhHHH-HH---HHHHHHHHHhccCCCCEEEEEEcccccccH----HHHHHHHHHHhcC-C----
Confidence 47999999999764 21111 00 011111 1 1246789999999996532 2233333322210 1
Q ss_pred EeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 226 RSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 226 ~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
..++.+||+++.|++++..++.+
T Consensus 229 ---------~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 229 ---------LQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp ---------CCEEECBTTTTBSHHHHHHHHHH
T ss_pred ---------CeEEEEECCCCCCHHHHHHHHHH
Confidence 24678999999999999888754
No 199
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.93 E-value=1.4e-10 Score=105.73 Aligned_cols=123 Identities=14% Similarity=0.110 Sum_probs=73.8
Q ss_pred EEEEEecCCCcHHHHHHHHHccC-CCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~-~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
.++++|.+|+|||||+|+|+... ...+.+.+++.+|+|.......
T Consensus 164 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~---------------------------------- 209 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP---------------------------------- 209 (369)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE----------------------------------
T ss_pred cEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE----------------------------------
Confidence 47889999999999999999531 0113455677777633211100
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhc---cccccccEEEEEccc--chHHHHhhhcccCCchHHHHHHhc
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLE---SAVRLDSIITVVDAK--NLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~---~~~~~d~vi~vvDa~--~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
-+.++.++||||+..+..+...+. ...+. ...+++.+++++|+. .+...+.. ...+.....
T Consensus 210 ------~~~~~~liDtPG~~~~~~~~~~l~-~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------l~~l~~~~~ 275 (369)
T 3ec1_A 210 ------LESGATLYDTPGIINHHQMAHFVD-ARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-------LDYIKGGRR 275 (369)
T ss_dssp ------CSTTCEEEECCSCCCCSSGGGGSC-TTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSE
T ss_pred ------eCCCeEEEeCCCcCcHHHHHHHHh-HHHHHHHhcccccCceEEEEcCCceEEECCEEE-------EEEccCCCc
Confidence 112368999999987654433221 12222 225788999999994 22221111 111222345
Q ss_pred cCEEEEeCCCCCCCCCC
Q 022736 188 ADVVILNKVDLVSPERS 204 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~ 204 (293)
+.++++||.|.+...+.
T Consensus 276 ~~~~v~~k~d~~~~~~~ 292 (369)
T 3ec1_A 276 SFVCYMANELTVHRTKL 292 (369)
T ss_dssp EEEEEECTTSCEEEEEG
T ss_pred eEEEEecCCcccccccH
Confidence 78999999999876543
No 200
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.90 E-value=4.8e-09 Score=102.54 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=43.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~ 199 (293)
...+.|+||||..+..... ......+|.+++|+|+.......... ......+...+.++++||+|+.
T Consensus 73 ~~~~nliDTpG~~~f~~~~--------~~~l~~ad~~ilVvD~~~g~~~qt~~-----~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 73 GHRVFLLDAPGYGDFVGEI--------RGALEAADAALVAVSAEAGVQVGTER-----AWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp TEEEEEEECCCSGGGHHHH--------HHHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCEEEEEECGGGC
T ss_pred CEEEEEEeCCCccchHHHH--------HHHHhhcCcEEEEEcCCcccchhHHH-----HHHHHHHccCCEEEEecCCchh
Confidence 4567899999987643222 12234678899999987654322210 2223344467889999999987
No 201
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.83 E-value=2.2e-10 Score=104.27 Aligned_cols=132 Identities=11% Similarity=0.146 Sum_probs=75.5
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCC--CeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHG--KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~--~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
.++++|.+|+|||||+|+|++...+ .+.+.+++.+|+|.......
T Consensus 162 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--------------------------------- 208 (368)
T 3h2y_A 162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--------------------------------- 208 (368)
T ss_dssp CEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE---------------------------------
T ss_pred eEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE---------------------------------
Confidence 4788999999999999999964211 22455667777532211100
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhh---ccccccccEEEEEccc--chHHHHhhhcccCCchHHHHHHh
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQL---ESAVRLDSIITVVDAK--NLLFQIDKYRHLSSYPEAIHQIA 186 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~---~~~~~~d~vi~vvDa~--~~~~~~~~~~~~~~~~~~~~qi~ 186 (293)
-...+.++||||+.++..+...+. ...+ ....+++.+++++|+. .+...+.. ...+....
T Consensus 209 -------~~~~~~liDtPG~~~~~~~~~~l~-~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------~d~l~~~~ 273 (368)
T 3h2y_A 209 -------LDEESSLYDTPGIINHHQMAHYVG-KQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-------FDYVSGGR 273 (368)
T ss_dssp -------SSSSCEEEECCCBCCTTSGGGGSC-HHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSS
T ss_pred -------ecCCeEEEeCCCcCcHHHHHHHhh-HHHHHHhccccccCceEEEEcCCCEEEEcceEE-------EEEecCCC
Confidence 012368999999887654332111 1111 2235678899999984 22221111 11122234
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHE 217 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ 217 (293)
.+.++++||+|.+...+ .+...+.+++
T Consensus 274 ~~~~~v~nk~d~~~~~~----~~~~~~~~~~ 300 (368)
T 3h2y_A 274 RAFTCHFSNRLTIHRTK----LEKADELYKN 300 (368)
T ss_dssp EEEEEEECTTSCEEEEE----HHHHHHHHHH
T ss_pred ceEEEEecCcccccccc----HHHHHHHHHH
Confidence 67899999999987653 3444444443
No 202
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.74 E-value=7.5e-08 Score=84.98 Aligned_cols=149 Identities=18% Similarity=0.222 Sum_probs=79.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcC-CCCcchhhhhhccCcceeeccchhH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSL 107 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~l 107 (293)
+..+++++|.+|+||||+++.|... ..+.++.++..|+.. ......+-... ..++ .+-.+.. .....++
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r-~~a~~ql~~~~~~~~v------~v~~~~~-~~~p~~~ 168 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR-PAALEQLQQLGQQIGV------PVYGEPG-EKDVVGI 168 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS-SHHHHHHHHHHHHHTC------CEECCTT-CCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-HHHHHHHHHHhccCCe------EEEecCC-CCCHHHH
Confidence 4568889999999999999999763 458899999988753 11110000000 0000 0000000 0011122
Q ss_pred H-HHHHHHHhhcCCCCEEEEecCCCCC--cH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736 108 V-QALEQLVQRKERLDHILLETTGLAN--PA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183 (293)
Q Consensus 108 ~-~~l~~l~~~~~~~d~iiidt~G~~~--~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ 183 (293)
. ..+..+. ..++|++||||||... .. .+...+. .+......|.+++|+|+......... ...+.
T Consensus 169 ~~~~l~~~~--~~~~D~ViIDTpg~~~~~~~~~l~~el~---~i~~~~~~d~vllVvda~~g~~~~~~-------~~~~~ 236 (297)
T 1j8m_F 169 AKRGVEKFL--SEKMEIIIVDTAGRHGYGEEAALLEEMK---NIYEAIKPDEVTLVIDASIGQKAYDL-------ASKFN 236 (297)
T ss_dssp HHHHHHHHH--HTTCSEEEEECCCSCCTTCHHHHHHHHH---HHHHHHCCSEEEEEEEGGGGGGHHHH-------HHHHH
T ss_pred HHHHHHHHH--hCCCCEEEEeCCCCcccccHHHHHHHHH---HHHHHhcCCEEEEEeeCCchHHHHHH-------HHHHH
Confidence 2 2333221 2678999999999765 32 2221110 01122457889999999754222111 11122
Q ss_pred HHhcc-CEEEEeCCCCCC
Q 022736 184 QIAFA-DVVILNKVDLVS 200 (293)
Q Consensus 184 qi~~a-~iivlNK~D~~~ 200 (293)
+ ..+ ..+|+||+|...
T Consensus 237 ~-~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 237 Q-ASKIGTIIITKMDGTA 253 (297)
T ss_dssp H-TCTTEEEEEECGGGCT
T ss_pred h-hCCCCEEEEeCCCCCc
Confidence 1 234 678999999753
No 203
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.72 E-value=3.3e-07 Score=85.76 Aligned_cols=149 Identities=15% Similarity=0.198 Sum_probs=75.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccch-hhhhcCCCCcchhhhhhccCcceeeccc---
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVK--- 104 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~-~~~~~~~~~~~~~~~~~l~~gcicc~~~--- 104 (293)
+--+++|+|++|||||||++.|... ..+.++.+...+......++. ..... ...-|.+.....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~-----------r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQ-----------RNNIPVIAQHTGADS 360 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHH-----------HHTCCEECCSTTCCH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHH-----------hcCceEEecccCcCH
Confidence 4458999999999999999999763 345677666555431000000 00000 000011111110
Q ss_pred -hhHHHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhh-cchhhcc--ccccccEEEEEcccchHHHHhhhcccCCch
Q 022736 105 -HSLVQALEQLVQRKERLDHILLETTGLANP-APLASVLW-LDDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (293)
Q Consensus 105 -~~l~~~l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~-~~~~~~~--~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (293)
..+.+.+.... ..++|++||||+|.... ..+...+. .....+. ....+-+++++|+......+.. .
T Consensus 361 ~~tV~e~l~~a~--~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~-------a 431 (503)
T 2yhs_A 361 ASVIFDAIQAAK--ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ-------A 431 (503)
T ss_dssp HHHHHHHHHHHH--HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH-------H
T ss_pred HHHHHHHHHHHH--hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH-------H
Confidence 01222222211 25689999999997543 33332211 0000010 0123467889999876543321 1
Q ss_pred HHHHHHhccCEEEEeCCCCC
Q 022736 180 EAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 180 ~~~~qi~~a~iivlNK~D~~ 199 (293)
..+.+.-..+.+|+||.|..
T Consensus 432 k~f~~~~~itgvIlTKLD~t 451 (503)
T 2yhs_A 432 KLFHEAVGLTGITLTKLDGT 451 (503)
T ss_dssp HHHHHHTCCSEEEEECGGGC
T ss_pred HHHHhhcCCCEEEEEcCCCc
Confidence 22232223578999999964
No 204
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.71 E-value=4.3e-08 Score=93.64 Aligned_cols=137 Identities=15% Similarity=0.099 Sum_probs=75.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCC-CeEEEEEcC-CCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHG-KRIAVILNE-FGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~-~~vavv~~d-~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
|+.-++|+|-.++|||||..+||....- .+.+-+... .+.....|..-.+. +--+.+...++.|.
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~Er-------eRGITI~s~~~~~~------ 96 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMER-------ERGISVTTSVMQFP------ 96 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC---------------------------CTTTEEEEE------
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHH-------HCCCcEeeceEEEE------
Confidence 6788999999999999999999853100 000000000 00000011111110 01122223333332
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
+.+..+-||||||..+...-. .+...-+|++|+||||..+....... ......+...|
T Consensus 97 ---------~~~~~iNlIDTPGHvDF~~Ev--------~raL~~~DgAvlVvda~~GV~~qT~~-----v~~~a~~~~lp 154 (548)
T 3vqt_A 97 ---------YRDRVVNLLDTPGHQDFSEDT--------YRVLTAVDSALVVIDAAKGVEAQTRK-----LMDVCRMRATP 154 (548)
T ss_dssp ---------ETTEEEEEECCCCGGGCSHHH--------HHHHHSCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTCC
T ss_pred ---------ECCEEEEEEeCCCcHHHHHHH--------HHHHHhcCceEEEeecCCCcccccHH-----HHHHHHHhCCc
Confidence 345678899999977753222 23345689999999998776544321 23344556778
Q ss_pred CEEEEeCCCCCCCC
Q 022736 189 DVVILNKVDLVSPE 202 (293)
Q Consensus 189 ~iivlNK~D~~~~~ 202 (293)
-++++||+|....+
T Consensus 155 ~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 155 VMTFVNKMDREALH 168 (548)
T ss_dssp EEEEEECTTSCCCC
T ss_pred eEEEEecccchhcc
Confidence 99999999987654
No 205
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.69 E-value=1.4e-07 Score=87.40 Aligned_cols=150 Identities=20% Similarity=0.238 Sum_probs=80.2
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CC-CCeEEEEEcCCCCccccchhh-hhcCCCCcchhhhhhccCcceeeccch
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFGEEIGVERAM-INEGEGGALVEEWVELANGCICCTVKH 105 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~-~~~vavv~~d~g~~~~~d~~~-~~~~~~~~~~~~~~~l~~gcicc~~~~ 105 (293)
.+..+|+++|..|+||||++..|... .. |+++.++..|+.....++... ... ..++. + +..+- .....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~-~~~l~---v--~~~~~--~~dp~ 169 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAE-QVGVD---F--FPSDV--GQKPV 169 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHH-HHTCE---E--CCCCS--SSCHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcc-cCCee---E--EeCCC--CCCHH
Confidence 45678889999999999999999864 34 899999999986411111100 000 00000 0 00000 00111
Q ss_pred hH-HHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736 106 SL-VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183 (293)
Q Consensus 106 ~l-~~~l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ 183 (293)
++ ...+..+. ..++|++||||||.... ......+. ........+.+++|+|+........ ....+.
T Consensus 170 ~i~~~~l~~~~--~~~~D~VIIDTpG~l~~~~~l~~~L~---~~~~~~~p~~vllVvda~~g~~~~~-------~~~~f~ 237 (433)
T 2xxa_A 170 DIVNAALKEAK--LKFYDVLLVDTAGRLHVDEAMMDEIK---QVHASINPVETLFVVDAMTGQDAAN-------TAKAFN 237 (433)
T ss_dssp HHHHHHHHHHH--HTTCSEEEEECCCCCTTCHHHHHHHH---HHHHHSCCSEEEEEEETTBCTTHHH-------HHHHHH
T ss_pred HHHHHHHHHHH--hCCCCEEEEECCCcccccHHHHHHHH---HHHHhhcCcceeEEeecchhHHHHH-------HHHHHh
Confidence 22 22233221 25789999999996543 22332211 0112235677899999975432211 111121
Q ss_pred HHhcc-CEEEEeCCCCCC
Q 022736 184 QIAFA-DVVILNKVDLVS 200 (293)
Q Consensus 184 qi~~a-~iivlNK~D~~~ 200 (293)
. ..+ ..+|+||+|...
T Consensus 238 ~-~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 238 E-ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp H-HSCCCCEEEECTTSSS
T ss_pred c-cCCCeEEEEecCCCCc
Confidence 1 123 568999999754
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.68 E-value=8.8e-09 Score=100.21 Aligned_cols=133 Identities=16% Similarity=0.220 Sum_probs=77.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~-~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+.-|+|+|-.++|||||..+|+.... -.+.+ .-+-|. ...|....+. +.-+.+...++.|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g--~v~~g~-~~~D~~~~Er-------eRGITI~s~~~~~~-------- 63 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELG--SVDKGT-TRTDNTLLER-------QRGITIQTGITSFQ-------- 63 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCS--SCCCSC-CSTTCSTTHH-------HHSSCSSCCCCCCB--------
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCcccc--ccccCC-cccCCcHHHH-------hCCCcEEeeeEEEE--------
Confidence 44578999999999999999985310 00000 001111 1112111111 11122233333332
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i 190 (293)
+.+..+-||||||..+...-. .....-+|++|+||||..+....... ......+.+.|-+
T Consensus 64 -------~~~~~iNlIDTPGH~DF~~Ev--------~raL~~~DgavlVVDa~~GV~~qT~~-----v~~~a~~~~lp~i 123 (638)
T 3j25_A 64 -------WENTKVNIIDTPGHMDFLAEV--------YRSLSVLDGAILLISAKDGVQAQTRI-----LFHALRKMGIPTI 123 (638)
T ss_dssp -------CSSCBCCCEECCCSSSTHHHH--------HHHHTTCSEEECCEESSCTTCSHHHH-----HHHHHHHHTCSCE
T ss_pred -------ECCEEEEEEECCCcHHHHHHH--------HHHHHHhCEEEEEEeCCCCCcHHHHH-----HHHHHHHcCCCeE
Confidence 345678899999988864333 23345689999999998765433221 2334456677899
Q ss_pred EEEeCCCCCCCC
Q 022736 191 VILNKVDLVSPE 202 (293)
Q Consensus 191 ivlNK~D~~~~~ 202 (293)
+++||+|....+
T Consensus 124 ~~INKmDr~~a~ 135 (638)
T 3j25_A 124 FFINKIDQNGID 135 (638)
T ss_dssp ECCEECCSSSCC
T ss_pred EEEeccccccCC
Confidence 999999987754
No 207
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.68 E-value=2.9e-07 Score=84.95 Aligned_cols=148 Identities=20% Similarity=0.204 Sum_probs=79.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeecc---ch
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV---KH 105 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~---~~ 105 (293)
+..+++++|+.|+||||++..|... ..+.++.++..|+.. ......+-..+ +...+ ..+.+.. ..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r-~aa~~qL~~~~-------~~~gv--~v~~~~~~~~p~ 166 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR-PAAREQLRLLG-------EKVGV--PVLEVMDGESPE 166 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC-HHHHHHHHHHH-------HHHTC--CEEECCTTCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC-chhHHHHHHhc-------ccCCc--cEEecCCCCCHH
Confidence 5668889999999999999999764 558899999988754 11111000000 00000 0011111 11
Q ss_pred hH-HHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736 106 SL-VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183 (293)
Q Consensus 106 ~l-~~~l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ 183 (293)
++ ...+..+. ..++|++||||||.... ......+. .+......+.+++|+|+......... ...+.
T Consensus 167 ~i~~~~l~~~~--~~~~DvVIIDTaG~l~~d~~l~~el~---~i~~~~~pd~vlLVvDa~tgq~av~~-------a~~f~ 234 (425)
T 2ffh_A 167 SIRRRVEEKAR--LEARDLILVDTAGRLQIDEPLMGELA---RLKEVLGPDEVLLVLDAMTGQEALSV-------ARAFD 234 (425)
T ss_dssp HHHHHHHHHHH--HTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGTTHHHHH-------HHHHH
T ss_pred HHHHHHHHHHH--HCCCCEEEEcCCCcccccHHHHHHHH---HhhhccCCceEEEEEeccchHHHHHH-------HHHHH
Confidence 22 22232221 26789999999995542 22222110 01222356778999999754322211 11122
Q ss_pred HHhccCEEEEeCCCCCC
Q 022736 184 QIAFADVVILNKVDLVS 200 (293)
Q Consensus 184 qi~~a~iivlNK~D~~~ 200 (293)
.--....+|+||.|...
T Consensus 235 ~~l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 235 EKVGVTGLVLTKLDGDA 251 (425)
T ss_dssp HHTCCCEEEEESGGGCS
T ss_pred hcCCceEEEEeCcCCcc
Confidence 21124788999999653
No 208
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.67 E-value=8.5e-09 Score=103.22 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=43.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~ 199 (293)
+..+.||||||..+...... .....+|++|+|+|+.......... ......+...+.++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~--------~~l~~aD~ailVvDa~~g~~~qt~~-----~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVT--------AALRVTDGALVVVDTIEGVCVQTET-----VLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHH--------HHHHTCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHH--------HHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCeEEEEECCCcc
Confidence 45688999999877543321 2235689999999998754322210 1112223356789999999986
Q ss_pred C
Q 022736 200 S 200 (293)
Q Consensus 200 ~ 200 (293)
.
T Consensus 164 ~ 164 (842)
T 1n0u_A 164 L 164 (842)
T ss_dssp H
T ss_pred h
Confidence 3
No 209
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.67 E-value=9e-09 Score=83.74 Aligned_cols=41 Identities=20% Similarity=0.394 Sum_probs=34.7
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
.++|+++|+|++|||||||+++|++. ..+.+++++.++++.
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 35899999999999999999999875 457889999998864
No 210
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.61 E-value=5e-08 Score=88.18 Aligned_cols=103 Identities=21% Similarity=0.159 Sum_probs=57.6
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~ 113 (293)
-++|+|.+|+|||||+|+|+. .+ +.+.+.++++...+...+ ...+.-...|..
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~----~~-~~v~~~p~tTi~p~~g~v----------------------~~~~~r~~~l~~ 56 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTK----AG-IEAANYPFCTIEPNTGVV----------------------PMPDPRLDALAE 56 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHH----TC-------CCCCCCCCSSEE----------------------ECCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC----CC-CcccCCCCceECceEEEE----------------------ecCCcccceeee
Confidence 478999999999999999995 33 345555554332221111 011111222222
Q ss_pred HHhh--cCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccc
Q 022736 114 LVQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN 164 (293)
Q Consensus 114 l~~~--~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~ 164 (293)
+... ..+..+.|+||||+.......+.+. ...+.....+|.+++|+|+..
T Consensus 57 ~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~-~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 57 IVKPERILPTTMEFVDIAGLVAGASKGEGLG-NKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHCCSEEECCEEEEEECCSCCTTHHHHGGGT-CCHHHHHHTCSEEEEEEECSC
T ss_pred eecccceeeeEEEEEECCCCcccccccchHH-HHHHHHHHhcCeEEEEEecCC
Confidence 2211 0124689999999987654433322 333445578999999999975
No 211
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.61 E-value=7.3e-07 Score=79.44 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=78.9
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCccee-ec-c--
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CT-V-- 103 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic-c~-~-- 103 (293)
.+..+++++|++|+||||++..|... ..+.++.++..|+.. ......+...... ....+-.+. +. .
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r-~~a~~ql~~~~~~-------~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR-AGATQQLEEWIKT-------RLNNKVDLVKANKLNA 174 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC-HHHHHHHHHHHTT-------TSCTTEEEECCSSTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc-hhHHHHHHHHHhc-------cccCCceEEeCCCCCC
Confidence 45678999999999999999999763 458899998888743 1100000000000 000010111 10 0
Q ss_pred -c-hhHHHHHHHHHhhcCCCCEEEEecCCCCCcH-HHHHhhh-cchhhc--cccccccEEEEEcccchHHHHhhhcccCC
Q 022736 104 -K-HSLVQALEQLVQRKERLDHILLETTGLANPA-PLASVLW-LDDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSS 177 (293)
Q Consensus 104 -~-~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~-~~~~~~--~~~~~d~vi~vvDa~~~~~~~~~~~~~~~ 177 (293)
. ..+.+.+.... ..++|+|||||||..... ...+.+. ....+. .....+.+++|+|+......+..
T Consensus 175 ~p~~~~~~~l~~~~--~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~------ 246 (320)
T 1zu4_A 175 DPASVVFDAIKKAK--EQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQ------ 246 (320)
T ss_dssp CHHHHHHHHHHHHH--HTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHH------
T ss_pred CHHHHHHHHHHHHH--hcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHH------
Confidence 0 01223333222 367999999999966532 2222110 001111 11236778999999854332221
Q ss_pred chHHHHHHhccCEEEEeCCCCCC
Q 022736 178 YPEAIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 178 ~~~~~~qi~~a~iivlNK~D~~~ 200 (293)
. ..+.+.-...-+|+||.|...
T Consensus 247 ~-~~~~~~~~i~GvVltk~d~~~ 268 (320)
T 1zu4_A 247 A-EEFSKVADVSGIILTKMDSTS 268 (320)
T ss_dssp H-HHHTTTSCCCEEEEECGGGCS
T ss_pred H-HHHhhcCCCcEEEEeCCCCCC
Confidence 0 111111123568999999643
No 212
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.58 E-value=9.2e-08 Score=85.15 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=39.9
Q ss_pred CCEEEEecCCCCCcHH--H-HHhhhcchhhccccccccEEEEEcccch-HHHHhhhcccCCchHHHHHH-----hccCEE
Q 022736 121 LDHILLETTGLANPAP--L-ASVLWLDDQLESAVRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQI-----AFADVV 191 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~--~-~~~~~~~~~~~~~~~~d~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~qi-----~~a~ii 191 (293)
..+-|+||+|..+... + ...+ + ..++++|+|+|.+.. ...... +..++.++ ..+.++
T Consensus 46 v~LqIWDTAGQErf~~~~l~~~~y-----y---r~a~~~IlV~Ditd~~~~~~~~------l~~~l~~~~~~~~~ipill 111 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEPSYDSERL-----F---KSVGALVYVIDSQDEYINAITN------LAMIIEYAYKVNPSINIEV 111 (331)
T ss_dssp SCEEEEECCSCSSSCCCSHHHHHH-----H---TTCSEEEEECCCSSCTTHHHHH------HHHHHHHHHHHCTTCEEEE
T ss_pred EEEEEEECCCchhccchhhhhhhh-----c---cCCCEEEEEEECCchHHHHHHH------HHHHHHHHhhcCCCCcEEE
Confidence 4678999999765421 1 1111 1 457889999999864 111111 11222221 245688
Q ss_pred EEeCCCCCCCC
Q 022736 192 ILNKVDLVSPE 202 (293)
Q Consensus 192 vlNK~D~~~~~ 202 (293)
+.||+|+.+++
T Consensus 112 vgNK~DL~~~~ 122 (331)
T 3r7w_B 112 LIHKVDGLSED 122 (331)
T ss_dssp ECCCCCSSCSH
T ss_pred EEECcccCchh
Confidence 88999998754
No 213
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.58 E-value=1.1e-06 Score=77.87 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=78.5
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l 107 (293)
.+..+++++|++|+||||++..|... ..+.++.++..|.-. ......+-... +...+ ..+......+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r-~~a~eqL~~~~-------~~~gl--~~~~~~s~~~~ 171 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR-AAAIEQLKIWG-------ERVGA--TVISHSEGADP 171 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC-HHHHHHHHHHH-------HHHTC--EEECCSTTCCH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc-HHHHHHHHHHH-------HHcCC--cEEecCCccCH
Confidence 34568999999999999999999763 357889888877542 11100000000 00000 00001011111
Q ss_pred ----HHHHHHHHhhcCCCCEEEEecCCCCCcH-HHHHhhh-cchhhcc--ccccccEEEEEcccchHHHHhhhcccCCch
Q 022736 108 ----VQALEQLVQRKERLDHILLETTGLANPA-PLASVLW-LDDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (293)
Q Consensus 108 ----~~~l~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~-~~~~~~~--~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (293)
.+++.... ..++|++|+||||..... .+.+.+. ....+.. ....+.+++|+|+......... .
T Consensus 172 ~~v~~~al~~a~--~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~-------a 242 (306)
T 1vma_A 172 AAVAFDAVAHAL--ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQ-------A 242 (306)
T ss_dssp HHHHHHHHHHHH--HTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHH-------H
T ss_pred HHHHHHHHHHHH--hcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHH-------H
Confidence 12233222 357899999999964332 2222111 0111110 1236678999999754332221 1
Q ss_pred HHHHHHhccCEEEEeCCCCCC
Q 022736 180 EAIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 180 ~~~~qi~~a~iivlNK~D~~~ 200 (293)
..+.+.....-+|+||.|...
T Consensus 243 ~~~~~~~~i~gvVlTk~D~~~ 263 (306)
T 1vma_A 243 KIFKEAVNVTGIILTKLDGTA 263 (306)
T ss_dssp HHHHHHSCCCEEEEECGGGCS
T ss_pred HHHHhcCCCCEEEEeCCCCcc
Confidence 122222335789999999653
No 214
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.54 E-value=6.5e-07 Score=78.91 Aligned_cols=145 Identities=19% Similarity=0.175 Sum_probs=78.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCCCccccchhhhhc-CCCCcchhhhhhccCcceeeccchh
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHS 106 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~ 106 (293)
+..+++++|+.||||||++..|... ..|+++.++..|+.. ......+-.. ...++.. ..+....+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r-~~a~eqL~~~~~~~gl~~----------~~~~~~~~ 172 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR-IAAVEQLKTYAELLQAPL----------EVCYTKEE 172 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS-TTHHHHHHHHHTTTTCCC----------CBCSSHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc-chHHHHHHHHHHhcCCCe----------EecCCHHH
Confidence 4568999999999999999999763 358899999988743 1111111000 0001000 00111223
Q ss_pred HHHHHHHHHhhcCCCCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736 107 LVQALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (293)
Q Consensus 107 l~~~l~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi 185 (293)
+..++.. ..++|++|+||+|..... .....+. ..+. ....+.+++|+|+............ .+..+
T Consensus 173 l~~al~~----~~~~dlvIiDT~G~~~~~~~~~~el~--~~l~-~~~~~~~~lVl~at~~~~~~~~~~~------~~~~l 239 (296)
T 2px0_A 173 FQQAKEL----FSEYDHVFVDTAGRNFKDPQYIDELK--ETIP-FESSIQSFLVLSATAKYEDMKHIVK------RFSSV 239 (296)
T ss_dssp HHHHHHH----GGGSSEEEEECCCCCTTSHHHHHHHH--HHSC-CCTTEEEEEEEETTBCHHHHHHHTT------TTSSS
T ss_pred HHHHHHH----hcCCCEEEEeCCCCChhhHHHHHHHH--HHHh-hcCCCeEEEEEECCCCHHHHHHHHH------HHhcC
Confidence 3333332 356899999999976432 2222111 1111 1224567889998765443332111 11111
Q ss_pred hccCEEEEeCCCCCC
Q 022736 186 AFADVVILNKVDLVS 200 (293)
Q Consensus 186 ~~a~iivlNK~D~~~ 200 (293)
...-+|+||.|...
T Consensus 240 -~~~giVltk~D~~~ 253 (296)
T 2px0_A 240 -PVNQYIFTKIDETT 253 (296)
T ss_dssp -CCCEEEEECTTTCS
T ss_pred -CCCEEEEeCCCccc
Confidence 24678899999754
No 215
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.51 E-value=3.3e-06 Score=74.30 Aligned_cols=148 Identities=19% Similarity=0.206 Sum_probs=77.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeec---cch
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT---VKH 105 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~---~~~ 105 (293)
+..+++++|..|+||||++..|... ..+.++.++..|+.. ...... +.. ..+ ..+-..+.+. ...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~-~~~~~q-l~~------~~~--~~~l~~~~~~~~~~p~ 166 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR-PAAREQ-LRL------LGE--KVGVPVLEVMDGESPE 166 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC-HHHHHH-HHH------HHH--HHTCCEEECCTTCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc-HhHHHH-HHH------hcc--cCCeEEEEcCCCCCHH
Confidence 4568889999999999999999763 457889998888753 111110 000 000 0000011111 111
Q ss_pred hH-HHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736 106 SL-VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183 (293)
Q Consensus 106 ~l-~~~l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ 183 (293)
++ ..++..+. ..++|++||||||.... ......+. . +......+.+++|+|+......... ...+.
T Consensus 167 ~l~~~~l~~~~--~~~~D~viiDtpp~~~~d~~~~~~l~--~-~~~~~~~~~~~lv~~~~~~~~~~~~-------~~~~~ 234 (295)
T 1ls1_A 167 SIRRRVEEKAR--LEARDLILVDTAGRLQIDEPLMGELA--R-LKEVLGPDEVLLVLDAMTGQEALSV-------ARAFD 234 (295)
T ss_dssp HHHHHHHHHHH--HHTCCEEEEECCCCSSCCHHHHHHHH--H-HHHHHCCSEEEEEEEGGGTHHHHHH-------HHHHH
T ss_pred HHHHHHHHHHH--hCCCCEEEEeCCCCccccHHHHHHHH--H-HhhhcCCCEEEEEEeCCCcHHHHHH-------HHHHh
Confidence 22 22333332 24689999999985432 22222111 0 1111246778899998754222211 11112
Q ss_pred HHhccCEEEEeCCCCCC
Q 022736 184 QIAFADVVILNKVDLVS 200 (293)
Q Consensus 184 qi~~a~iivlNK~D~~~ 200 (293)
+--...-+|+||.|...
T Consensus 235 ~~~~i~givlnk~d~~~ 251 (295)
T 1ls1_A 235 EKVGVTGLVLTKLDGDA 251 (295)
T ss_dssp HHTCCCEEEEECGGGCS
T ss_pred hcCCCCEEEEECCCCCc
Confidence 11123678999999654
No 216
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.49 E-value=1.2e-06 Score=78.15 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=77.2
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhh-cCCCCcchhhhhhccCcceeeccchh
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMIN-EGEGGALVEEWVELANGCICCTVKHS 106 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~-~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (293)
.+.-+++++|++||||||+++.|... ..+.++.+...|... ......+-. ....++. ++.-..+. .....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r-~~a~eql~~~~~~~gv~---~v~q~~~~---~p~~~ 199 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR-AGAIEQLEEHAKRIGVK---VIKHSYGA---DPAAV 199 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS-TTHHHHHHHHHHHTTCE---EECCCTTC---CHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc-cchHHHHHHHHHHcCce---EEeccccC---CHHHH
Confidence 34568999999999999999999863 346678887766532 111000000 0000000 00000000 00001
Q ss_pred HHHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736 107 LVQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (293)
Q Consensus 107 l~~~l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi 185 (293)
..+.+..- ...+.+++++||+|.... ......+. .+......|..++++|+......... ...+.+.
T Consensus 200 v~e~l~~~--~~~~~d~vliDtaG~~~~~~~l~~eL~---~i~ral~~de~llvLDa~t~~~~~~~-------~~~~~~~ 267 (328)
T 3e70_C 200 AYDAIQHA--KARGIDVVLIDTAGRSETNRNLMDEMK---KIARVTKPNLVIFVGDALAGNAIVEQ-------ARQFNEA 267 (328)
T ss_dssp HHHHHHHH--HHHTCSEEEEEECCSCCTTTCHHHHHH---HHHHHHCCSEEEEEEEGGGTTHHHHH-------HHHHHHH
T ss_pred HHHHHHHH--HhccchhhHHhhccchhHHHHHHHHHH---HHHHHhcCCCCEEEEecHHHHHHHHH-------HHHHHHh
Confidence 11222111 124678999999997542 22222221 01122346778999998765432221 1222323
Q ss_pred hccCEEEEeCCCCC
Q 022736 186 AFADVVILNKVDLV 199 (293)
Q Consensus 186 ~~a~iivlNK~D~~ 199 (293)
.....+++||.|..
T Consensus 268 ~~it~iilTKlD~~ 281 (328)
T 3e70_C 268 VKIDGIILTKLDAD 281 (328)
T ss_dssp SCCCEEEEECGGGC
T ss_pred cCCCEEEEeCcCCc
Confidence 35679999999964
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.48 E-value=7.9e-08 Score=83.68 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
..++|+|++|||||||+|.|..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 3588999999999999999985
No 218
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.46 E-value=1.3e-07 Score=86.27 Aligned_cols=104 Identities=19% Similarity=0.064 Sum_probs=46.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
..++|+|.+|+|||||+|+|. +.++ .+.+.+++|....... +.+ .+.-...+.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Lt----g~~~-~~~~~p~tTi~p~~g~--------------------v~v--~~~r~~~l~ 75 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLT----NSQA-SAENFPFCTIDPNESR--------------------VPV--PDERFDFLC 75 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHH----C--------------CCSEEE--------------------EEC--CCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH----CCCc-cccCCCccccCceeEE--------------------EEE--CCccceeec
Confidence 348899999999999999999 4444 4555555432221111 111 111111112
Q ss_pred HHHhh--cCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccc
Q 022736 113 QLVQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN 164 (293)
Q Consensus 113 ~l~~~--~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~ 164 (293)
..... ..+..+.++||||+.......+.+ ....+.....+|.+++|+|+..
T Consensus 76 ~~~~p~~~~~~~i~lvDtpGl~~~as~~~gl-g~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 76 QYHKPASKIPAFLNVVDIAGLVKGAHNGQGL-GNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHCCSEEECCEEEEEECCC------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccCcccccccccEEEECCCcccccchhhHH-HHHHHHHHHhcCeEEEEEecCC
Confidence 11110 013458999999987654432211 1233455578999999999864
No 219
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.41 E-value=3.7e-07 Score=84.12 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=27.0
Q ss_pred eEEEccccccccCcccCC-------CCceeEEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHEND-------DVSVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-------~~~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++.+ ++.|+..+ +. ...++-++|+|++|||||||+|.|+.
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 344555 56666543 22 22344489999999999999999994
No 220
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.39 E-value=2.8e-07 Score=90.72 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=75.1
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~-~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
.++.-+.|+|-.++|||||..+|+.... -.+.+-+ +-|. ...|....+. +.-+.+...++.+..++.-
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v--~~~~-~~~D~~~~E~-------eRGITI~s~~~s~~~~~~~- 79 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEV--HDGA-ATTDWMVQEQ-------ERGITITSAAVTTFWKGSR- 79 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC----------------------------------CCEEEEEECCTT-
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCcee--cCCC-ccCCChHHHH-------HcCCeEEeeeEEEEeccCc-
Confidence 4677899999999999999999985310 0000000 0111 1112111111 0112222333333221100
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
...+++.+-||||||..+...-. .....-+|++|+|||+..+....... ......+...+
T Consensus 80 -------~~~~~~~iNlIDTPGHvDF~~Ev--------~~aLr~~DgavlvVDaveGV~~qT~~-----v~~~a~~~~lp 139 (709)
T 4fn5_A 80 -------GQYDNYRVNVIDTPGHVDFTIEV--------ERSLRVLDGAVVVFCGTSGVEPQSET-----VWRQANKYGVP 139 (709)
T ss_dssp -------SCSCCEEEEEECCCSCTTCHHHH--------HHHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHHHHTCC
T ss_pred -------CCCCCEEEEEEeCCCCcccHHHH--------HHHHHHhCeEEEEEECCCCCchhHHH-----HHHHHHHcCCC
Confidence 00124567899999988864332 22335689999999998765443321 22334555778
Q ss_pred CEEEEeCCCCCCCC
Q 022736 189 DVVILNKVDLVSPE 202 (293)
Q Consensus 189 ~iivlNK~D~~~~~ 202 (293)
-++++||+|....+
T Consensus 140 ~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 140 RIVYVNKMDRQGAN 153 (709)
T ss_dssp EEEEEECSSSTTCC
T ss_pred eEEEEccccccCcc
Confidence 99999999997654
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.33 E-value=8.7e-07 Score=81.49 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+.++++|+|++|||||||+|.|+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 345899999999999999999995
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.28 E-value=6.3e-07 Score=78.43 Aligned_cols=35 Identities=34% Similarity=0.337 Sum_probs=22.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~ 70 (293)
...++++|.+|+|||||+|+|+ +.+.+.+.+.+|+
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~----~~~~~~~~~~~g~ 154 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLA----KKNIAKTGDRPGI 154 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH----TSCCC--------
T ss_pred CceEEEEecCCCchHHHHHHHh----cCceeecCCCCCe
Confidence 3457889999999999999999 5665666666765
No 223
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.22 E-value=4.9e-07 Score=82.01 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=27.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccc
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN 164 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~ 164 (293)
..+.|+||||+.......+.+ ....+.....+|.+++|+|+..
T Consensus 69 ~~i~lvDtpGl~~~a~~~~~l-g~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 69 THVEFVDIAGLVKGAHKGEGL-GNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CEEEEEECCSCCCCCCSSSCT-THHHHHHHHTCSEEEEEEECCC
T ss_pred ceEEEEECCCccccccccchH-HHHHHHHHHhCCEEEEEEECCC
Confidence 468999999987542211111 1122334567899999999974
No 224
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.21 E-value=1.5e-07 Score=85.93 Aligned_cols=106 Identities=23% Similarity=0.129 Sum_probs=56.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
-..++|+|++|||||||+|.|+. .+++.+.+.+++++..+...+. + .+.-...+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg----~~~a~~~~~p~tTi~p~~G~v~--------------------v--~~~r~~~l 73 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITK----SVLGNPANYPYATIDPEEAKVA--------------------V--PDERFDWL 73 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH----STTTSTTCCSSCCCCTTEEEEE--------------------E--CCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC----CCcccccCCCceeecceeeeee--------------------e--CCcchhhh
Confidence 45789999999999999999994 3322344555542221111110 0 00001112
Q ss_pred HHHHhhc--CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccc
Q 022736 112 EQLVQRK--ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN 164 (293)
Q Consensus 112 ~~l~~~~--~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~ 164 (293)
..+.... -+..+.++|+||+.......+.+ ....+.....+|.+++|+|+..
T Consensus 74 ~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L-~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 74 CEAYKPKSRVPAFLTVFDIAGLTKGASTGVGL-GNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHCCSEEECEEEEEECTGGGCCCCCSSSSS-CHHHHHHHTTCSEEEEEEECCC
T ss_pred hhhcccccccCcceEEEeccccccCCcHHHHH-HHHHHHHHHHHHHHHHHHhccc
Confidence 2222110 01247899999976543221111 1122344457889999999853
No 225
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.20 E-value=7.8e-05 Score=65.74 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=75.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccc-cch-hhhhcCCCCcchhhhhhccCcceeeccch-
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG-VER-AMINEGEGGALVEEWVELANGCICCTVKH- 105 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~-~d~-~~~~~~~~~~~~~~~~~l~~gcicc~~~~- 105 (293)
+.-+++|+|+.||||||+++.|... ..+.++.+...|... .. ... ...... ..-|.+......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r-~~a~~ql~~~~~~-----------~~i~~v~q~~~~~ 168 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR-AAGGTQLSEWGKR-----------LSIPVIQGPEGTD 168 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS-TTTTHHHHHHHHH-----------HTCCEECCCTTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC-hhHHHHHHHHHHh-----------cCceEEEeCCCCC
Confidence 4558999999999999999999763 446677777666432 11 000 000000 000111100000
Q ss_pred ---hHHHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcc-hhhc--cccccccEEEEEcccchHHHHhhhcccCCc
Q 022736 106 ---SLVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLD-DQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (293)
Q Consensus 106 ---~l~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~-~~~~--~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~ 178 (293)
-..+.+..-. ..+.+++++||+|..+ .......+... ..+. -....+.+++++|+.........
T Consensus 169 p~~~v~~~v~~~~--~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~------- 239 (304)
T 1rj9_A 169 SAALAYDAVQAMK--ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQ------- 239 (304)
T ss_dssp HHHHHHHHHHHHH--HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHH-------
T ss_pred HHHHHHHHHHHHH--hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHH-------
Confidence 0112222111 2357899999999654 22222221100 0010 11234557889999876543322
Q ss_pred hHHHHHHhccCEEEEeCCCCCC
Q 022736 179 PEAIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 179 ~~~~~qi~~a~iivlNK~D~~~ 200 (293)
...+.+.....++++||.|...
T Consensus 240 ~~~~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 240 AKKFHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp HHHHHHHHCCSEEEEECTTSSC
T ss_pred HHHHHHHcCCcEEEEECCcccc
Confidence 1122222346899999998653
No 226
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.18 E-value=2.4e-05 Score=64.27 Aligned_cols=148 Identities=15% Similarity=0.141 Sum_probs=82.2
Q ss_pred eEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 33 GVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 33 pvi~i~-G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
++|.|+ +..|+||||+.-.|... ..|+++.++..|+.. +.. ..+.....+. -+.......+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~--~~~-~~~~~~~~~~-----------~~~~~~~~~l~~ 67 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQM--SLT-NWSKAGKAAF-----------DVFTAASEKDVY 67 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTC--HHH-HHHTTSCCSS-----------EEEECCSHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCC--CHH-HHHhcCCCCC-----------cEEecCcHHHHH
Confidence 456555 77889999999888663 468999999999864 111 1111111110 001111245555
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh---
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--- 186 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~--- 186 (293)
.+..+. ..+|++|||||+...... .. .....|.++.++.+.... ..-.. ....+.++.
T Consensus 68 ~l~~l~---~~yD~viiD~~~~~~~~~-~~---------~l~~ad~viiv~~~~~~~-~~~~~-----~~~~l~~~~~~~ 128 (206)
T 4dzz_A 68 GIRKDL---ADYDFAIVDGAGSLSVIT-SA---------AVMVSDLVIIPVTPSPLD-FSAAG-----SVVTVLEAQAYS 128 (206)
T ss_dssp THHHHT---TTSSEEEEECCSSSSHHH-HH---------HHHHCSEEEEEECSCTTT-HHHHH-----HHHHHHTTSCGG
T ss_pred HHHHhc---CCCCEEEEECCCCCCHHH-HH---------HHHHCCEEEEEecCCHHH-HHHHH-----HHHHHHHHHHhC
Confidence 555542 468999999998663211 11 123467789999886543 21100 122232221
Q ss_pred --ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhh
Q 022736 187 --FADVVILNKVDLVSPERSGDSLDELEKEIHEI 218 (293)
Q Consensus 187 --~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~l 218 (293)
....+|+||++.-... ...+.+.++.+
T Consensus 129 ~~~~~~vv~N~~~~~~~~-----~~~~~~~l~~~ 157 (206)
T 4dzz_A 129 RKVEARFLITRKIEMATM-----LNVLKESIKDT 157 (206)
T ss_dssp GCCEEEEEECSBCTTEEE-----EHHHHHHHHHH
T ss_pred CCCcEEEEEeccCCCchH-----HHHHHHHHHHc
Confidence 1238999999854321 24455556554
No 227
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=98.17 E-value=5.1e-05 Score=63.08 Aligned_cols=141 Identities=13% Similarity=0.076 Sum_probs=78.5
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
.+..+..|+||||+.-.|... ..| ++.++..|+.. +.. ..+.. .+ ++...+. .+ .+.
T Consensus 4 ~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~--~~~-~~~~~-~~---------l~~~vi~----~~---~l~ 62 (209)
T 3cwq_A 4 TVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNR--SAT-GWGKR-GS---------LPFKVVD----ER---QAA 62 (209)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTC--HHH-HHHHH-SC---------CSSEEEE----GG---GHH
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCC--CHH-HHhcC-CC---------CCcceeC----HH---HHH
Confidence 345688999999999998763 558 99999999864 111 11110 00 1111111 11 233
Q ss_pred HHHhhcCCCCEEEEecCCC-CCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-hccCE
Q 022736 113 QLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADV 190 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~-~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-~~a~i 190 (293)
.+ ...+|++|||||+. ..+.... .....|.+|.++.+....-..-. .+...+.++ .....
T Consensus 63 ~l---~~~yD~viiD~p~~~~~~~~~~----------~l~~aD~viiv~~~~~~~~~~~~-----~~~~~l~~~~~~~~~ 124 (209)
T 3cwq_A 63 KY---APKYQNIVIDTQARPEDEDLEA----------LADGCDLLVIPSTPDALALDALM-----LTIETLQKLGNNRFR 124 (209)
T ss_dssp HH---GGGCSEEEEEEECCCSSSHHHH----------HHHTSSEEEEEECSSHHHHHHHH-----HHHHHHHHTCSSSEE
T ss_pred Hh---hhcCCEEEEeCCCCcCcHHHHH----------HHHHCCEEEEEecCCchhHHHHH-----HHHHHHHhccCCCEE
Confidence 33 25689999999996 5542211 12356788999988653221110 022233332 33467
Q ss_pred EEEeCCCCCCCCCCcchHHHHHHHHHhh
Q 022736 191 VILNKVDLVSPERSGDSLDELEKEIHEI 218 (293)
Q Consensus 191 ivlNK~D~~~~~~~~~~~~~~~~~l~~l 218 (293)
+|+|+.+.-... ....+.+.++++
T Consensus 125 vv~N~~~~~~~~----~~~~~~~~l~~~ 148 (209)
T 3cwq_A 125 ILLTIIPPYPSK----DGDEARQLLTTA 148 (209)
T ss_dssp EEECSBCCTTSC----HHHHHHHHHHHT
T ss_pred EEEEecCCccch----HHHHHHHHHHHc
Confidence 899999865311 124555666653
No 228
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=98.14 E-value=1.8e-05 Score=69.63 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=33.7
Q ss_pred CCCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 28 DDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 28 ~~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
...+..+|+|+|..|+||||+.-.|... ..|++|.++..|++.
T Consensus 37 ~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 37 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred ccCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3445678888899999999999888663 458999999999864
No 229
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=98.07 E-value=3.3e-05 Score=66.99 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=32.6
Q ss_pred CceeEEEEEec-CCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 30 VSVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 30 ~~~pvi~i~G~-~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
.+..+++|+|. +|+||||+.-.|... ..|+++.+|..|+..
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~ 123 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRK 123 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSS
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 34568888865 899999999888663 468999999999753
No 230
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.05 E-value=2.6e-06 Score=81.68 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.3
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHc
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
..+.++|+|+|++|+|||||+|+|+.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g 60 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAG 60 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcC
Confidence 45678899999999999999999994
No 231
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.97 E-value=3.2e-06 Score=73.16 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=21.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~ 70 (293)
..++++|.+|+|||||+|+|. +.+.+.+.+.+|+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~----~~~~~~~~~~~g~ 133 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK----GKRASSVGAQPGI 133 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH----TTCC---------
T ss_pred hheEEeCCCCCCHHHHHHHHh----cccccccCCCCCC
Confidence 467889999999999999999 4444344444554
No 232
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.94 E-value=6.5e-05 Score=66.07 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=32.2
Q ss_pred CceeEEEEEec-CCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 30 VSVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 30 ~~~pvi~i~G~-~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
.+..+++|+|. +|+||||+.-.|... ..|++|.+|..|+.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r 144 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 144 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 34568888886 799999999888663 45899999999984
No 233
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.94 E-value=0.00014 Score=63.64 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=31.4
Q ss_pred ceeEEEEEe-cCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 31 SVGVTVITG-FLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 31 ~~pvi~i~G-~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
+..+|+|+| .+|+||||+.-.|... ..|+++.+|..|+..
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~ 133 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRK 133 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCC
Confidence 455676665 5899999999888663 568999999999863
No 234
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.91 E-value=0.00031 Score=61.81 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=29.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~ 68 (293)
+--+++++|+.||||||+++.|... ..+.++.+...|.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 4458999999999999999999763 3456777665554
No 235
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.87 E-value=0.00039 Score=62.65 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=29.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~ 68 (293)
+.-+++++|+.||||||+++.|... ..+.++.+...|.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 4558999999999999999999763 3456777766554
No 236
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.85 E-value=0.00014 Score=61.47 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=29.9
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
|+|+|..|+||||+.-.|... ..|+++.++..|++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 445999999999999998763 56899999999985
No 237
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.84 E-value=5.6e-05 Score=73.02 Aligned_cols=46 Identities=15% Similarity=0.293 Sum_probs=26.2
Q ss_pred CceEEEccccccccCcc--------------cCCCCceeEEEEEecCCCcHHHHHHHHHc
Q 022736 9 PLAVRIDETTHEFSNSH--------------ENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~~--------------~~~~~~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
|..+++.++++.|.+.. ......+|.++|+|+.|||||||++.|..
T Consensus 8 ~~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 8 PGSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHS
T ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhC
Confidence 34567777777665421 11235688999999999999999999995
No 238
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.83 E-value=0.00024 Score=60.98 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=29.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
+.+..|..|+||||+.-.|... ..|+++.++..|+..
T Consensus 21 I~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 21 IAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp EEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3445678899999999888653 458999999999874
No 239
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.79 E-value=0.00037 Score=59.78 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=31.5
Q ss_pred CCceeEEEE-EecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCC
Q 022736 29 DVSVGVTVI-TGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGE 70 (293)
Q Consensus 29 ~~~~pvi~i-~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~ 70 (293)
..+.++|+| .|..|+||||+.-.|... ..|+++.++..|+..
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDMDTQA 67 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHTTTSCEEEEEECTTC
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 345566665 678899999999888552 268999999999874
No 240
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.77 E-value=0.0017 Score=54.52 Aligned_cols=38 Identities=11% Similarity=0.018 Sum_probs=30.1
Q ss_pred eeEEEE-EecCCCcHHHHHHHHHcc--CC-CCeEEEEEcCCC
Q 022736 32 VGVTVI-TGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFG 69 (293)
Q Consensus 32 ~pvi~i-~G~~gaGKTTlin~ll~~--~~-~~~vavv~~d~g 69 (293)
..+|.| .+..|+||||+.-.|... .. |+++.++..|+.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 345555 467899999999998763 45 999999999986
No 241
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.76 E-value=0.00022 Score=60.93 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=31.4
Q ss_pred ceeEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 31 SVGVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 31 ~~pvi~i~-G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
+.++|.|+ +..|+||||+.-.|... ..|+++.++..|+..
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 47 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQG 47 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCc
Confidence 34567665 67899999999888763 458999999999863
No 242
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.75 E-value=0.00036 Score=59.60 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=29.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
+.+..+..|+||||+.-.|... ..|+++.++..|+.
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 3445778899999999988763 45899999999984
No 243
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.65 E-value=2e-05 Score=68.75 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=38.1
Q ss_pred CCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
.++++++++++++|+..+.+....+- +++|+|+.|||||||++.|..-
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34579999999999876666544333 5899999999999999999853
No 244
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.64 E-value=0.0017 Score=57.83 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=34.0
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
....+++++|..|+||||+.-.|... ..|+++.++..|+..
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 34567889999999999999888653 568999999999754
No 245
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.61 E-value=0.00066 Score=56.87 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=29.1
Q ss_pred eEEEE-EecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 33 GVTVI-TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 33 pvi~i-~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
.+|.| .+..|+||||+.-.|... ..|+++.++..|++
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 34444 567899999999988763 45899999999985
No 246
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.61 E-value=2.6e-05 Score=65.71 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=36.1
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
++++++++++|++.+.+....+- +++|+|++|||||||++.|..
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 48999999999876666544333 689999999999999999985
No 247
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.60 E-value=3.3e-05 Score=66.83 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=38.0
Q ss_pred ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
.++++.+++++|+..+.+....+- +++|+|++|||||||++.|..
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 378999999999987777654433 589999999999999999985
No 248
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.55 E-value=0.00057 Score=58.06 Aligned_cols=37 Identities=35% Similarity=0.498 Sum_probs=29.2
Q ss_pred eEEEE-EecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 33 GVTVI-TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 33 pvi~i-~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
.+|.| .+..|+||||+.-.|... ..|+++.++..|++
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIG 42 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 34554 667889999999988663 45899999999984
No 249
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.55 E-value=3e-05 Score=71.87 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=24.6
Q ss_pred CCCceeEEEEEecCCCcHHHHHHHHHc
Q 022736 28 DDVSVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 28 ~~~~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
...++.||.|+|++++|||||+|+|++
T Consensus 63 ~~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 63 RDKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TTSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHhh
Confidence 456899999999999999999999985
No 250
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.53 E-value=0.0015 Score=55.84 Aligned_cols=38 Identities=32% Similarity=0.310 Sum_probs=31.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
.+|.|.|..|+||||+.-.|... ..|+++.++-.|+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 46777899999999999888763 568999999999864
No 251
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.53 E-value=3.4e-05 Score=66.69 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=36.7
Q ss_pred eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|++.+.+....+ -+++|+|+.|||||||++.|..-
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 5899999999987666554433 26999999999999999999853
No 252
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.53 E-value=3.3e-05 Score=66.67 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=36.6
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
++++++++++|+..+.+....+- +++|+|++|||||||++.|..-
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999876666544333 6899999999999999999853
No 253
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.52 E-value=4.1e-05 Score=65.18 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=36.4
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
++++++++++|+..+.+....+- +++|+|+.|||||||++.|..-
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999876655543332 6999999999999999999853
No 254
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.51 E-value=3.9e-05 Score=66.02 Aligned_cols=45 Identities=38% Similarity=0.471 Sum_probs=36.5
Q ss_pred eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
++++++++++|++.+.+....+ -+++|+|+.|||||||++.|..-
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999987666554332 26999999999999999999853
No 255
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.48 E-value=4.6e-05 Score=68.64 Aligned_cols=45 Identities=29% Similarity=0.460 Sum_probs=37.6
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|+..+.+.+..+- +++|+|++|||||||++.|..-
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 68999999999887776654333 5899999999999999999863
No 256
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.47 E-value=5.3e-05 Score=68.64 Aligned_cols=49 Identities=24% Similarity=0.385 Sum_probs=38.1
Q ss_pred CCCCc-eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 6 EDPPL-AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 6 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
|+.+| .+++++++++|+....+....+ -+++|+|++|||||||++.|..
T Consensus 5 ~~~~M~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 5 EVIKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp -CCCCCCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cceeeeeEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 44556 4899999999987655554332 2689999999999999999986
No 257
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.47 E-value=5.1e-05 Score=63.49 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=35.4
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|++ +.+....+- +++|+|+.|||||||++.|..-
T Consensus 10 ~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 10 KLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999977 655544333 5899999999999999999853
No 258
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.47 E-value=5e-05 Score=65.18 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=36.1
Q ss_pred eEEEcccccccc-CcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
++++++++++|+ .++.+.....- +++|+|+.|||||||++.|..-
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 589999999997 65555543332 6899999999999999999863
No 259
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.47 E-value=4.8e-05 Score=65.85 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=35.9
Q ss_pred eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++++++++|+.++.+....+ -+++|+|+.|||||||++.|..
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999987665554333 2699999999999999999994
No 260
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.47 E-value=0.0014 Score=56.85 Aligned_cols=37 Identities=32% Similarity=0.388 Sum_probs=29.4
Q ss_pred eEEEE-EecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 33 GVTVI-TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 33 pvi~i-~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
.+|.| .+..|+||||+.-.|... ..|+++.++..|++
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 44 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLR 44 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 35555 467899999999998663 45899999999993
No 261
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.46 E-value=4.4e-05 Score=65.69 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=36.3
Q ss_pred eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|+..+.+....+ -+++|+|+.|||||||++.|..-
T Consensus 15 ~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999987666554333 26999999999999999999853
No 262
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.46 E-value=6e-05 Score=65.53 Aligned_cols=45 Identities=27% Similarity=0.370 Sum_probs=35.6
Q ss_pred eEEEccccccccCcc-cCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSH-ENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~-~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
++++++++++|+... .+....+- +++|+|++|||||||++.|..-
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 689999999997533 55543322 5999999999999999999853
No 263
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.45 E-value=5.7e-05 Score=64.68 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=35.9
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
++++++++++|+..+.+....+- +++|+|+.|||||||++.|..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 48899999999876665543332 699999999999999999994
No 264
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.42 E-value=6.7e-05 Score=63.98 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=33.5
Q ss_pred EEEccccccc-cCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEF-SNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++| ++.+.+....+ -+++|+|+.|||||||++.|..
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 6788999999 44455443322 2699999999999999999985
No 265
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.40 E-value=7.3e-05 Score=63.50 Aligned_cols=44 Identities=18% Similarity=0.468 Sum_probs=34.4
Q ss_pred eEEEccccccccC--cccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSN--SHENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++++++++|+. .+.+....+ -+++|+|+.|||||||++.|..
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4889999999973 444443333 2699999999999999999985
No 266
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.39 E-value=6.3e-05 Score=65.04 Aligned_cols=46 Identities=24% Similarity=0.439 Sum_probs=34.5
Q ss_pred ceEEEcccccccc--C---cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 10 LAVRIDETTHEFS--N---SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 10 ~~~~~~~~~~~~~--~---~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
|++++++++++|+ . .+.+....+ -+++|+|+.|||||||++.|..-
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 1 MRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CCEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3588999999996 3 234443322 26899999999999999999853
No 267
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.38 E-value=9.6e-05 Score=64.09 Aligned_cols=45 Identities=24% Similarity=0.385 Sum_probs=35.5
Q ss_pred eEEEccccccccC---cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSN---SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~---~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|+. .+.+....+ -+++|+|+.|||||||++.|..-
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999976 444443332 26899999999999999999853
No 268
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.37 E-value=0.0001 Score=62.28 Aligned_cols=45 Identities=22% Similarity=0.384 Sum_probs=35.1
Q ss_pred eEEEcccccccc--CcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFS--NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~--~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|+ ..+.+....+- +++|+|+.|||||||++.|..-
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 689999999995 34454433322 6899999999999999999864
No 269
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.35 E-value=0.00012 Score=65.98 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=37.5
Q ss_pred CCceEEEccccccc-cCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 8 PPLAVRIDETTHEF-SNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+..+++++++++| ++...+....+ -+++|+|++|||||||++.|..
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 45679999999999 76555554332 2689999999999999999986
No 270
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.35 E-value=0.0013 Score=57.29 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=30.2
Q ss_pred eEEEEEe---cCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 33 GVTVITG---FLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 33 pvi~i~G---~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
++++|++ ..|+||||+.-.|... ..|+++.++..|+..
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 4555554 8999999999888653 468999999999874
No 271
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.34 E-value=8.6e-05 Score=63.48 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=33.7
Q ss_pred EEEccccccc--cCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 12 VRIDETTHEF--SNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 12 ~~~~~~~~~~--~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++++++++| +..+.+....+ -+++|+|+.|||||||++.|..-
T Consensus 8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6788999999 34444443332 26899999999999999999853
No 272
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.33 E-value=0.00014 Score=66.20 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=37.9
Q ss_pred CCCCceEEEccccccc--cCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 6 EDPPLAVRIDETTHEF--SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 6 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
|+.+-.+++++++++| +....+....+- +++|+|++|||||||++.|..
T Consensus 14 ~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp SSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 3444579999999999 455555544333 599999999999999999985
No 273
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=97.32 E-value=0.002 Score=55.81 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=31.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
.+|.|.|..|+||||+.-.|... ..|+++.++-.|+..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 56777899999999999888653 458999999999864
No 274
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.30 E-value=9.4e-05 Score=60.77 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=23.0
Q ss_pred cccCcccCCCCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 20 ~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+|.+.+.....+..+|+|+|++||||||+.+.|.+.
T Consensus 6 ~~~~~~~~m~~~~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 6 EYKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp ---------CCCSSCEEEECSTTSCHHHHHHHHHHH
T ss_pred eecCcccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444444444444668999999999999999999753
No 275
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.29 E-value=8e-05 Score=63.18 Aligned_cols=43 Identities=28% Similarity=0.392 Sum_probs=32.5
Q ss_pred EEEccccccccCc----ccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNS----HENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~----~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++|+.. ..+....+ -+++|+|+.|||||||++.|..
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 6788999888742 23433222 3699999999999999999985
No 276
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=97.27 E-value=0.0026 Score=54.06 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=29.4
Q ss_pred CCceeEEEEEec-CCCcHHHHHHHHHcc--CCCCeEEEEE
Q 022736 29 DVSVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVIL 65 (293)
Q Consensus 29 ~~~~pvi~i~G~-~gaGKTTlin~ll~~--~~~~~vavv~ 65 (293)
+++.+.+.|+|. .|+|||++.-.|++. ..|.+++...
T Consensus 18 ~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 18 YFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp -CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 445688888887 999999999998874 4688888875
No 277
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.27 E-value=0.00014 Score=62.70 Aligned_cols=46 Identities=13% Similarity=0.358 Sum_probs=35.1
Q ss_pred ceEEEccccccccCc---ccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 10 LAVRIDETTHEFSNS---HENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~---~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
..+++++++++|+.. +.+....+ -+++|+|+.|||||||++.|..-
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999763 33433222 26999999999999999999853
No 278
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.21 E-value=4.1e-05 Score=60.93 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=31.5
Q ss_pred EEEccccccccCcccCCC-----CceeEEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNSHENDD-----VSVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~-----~~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+...++++.|+....+.. .+--++++.|++|||||||++.|..
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 444555677765544443 3445899999999999999999985
No 279
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.20 E-value=0.00015 Score=65.87 Aligned_cols=44 Identities=27% Similarity=0.468 Sum_probs=36.8
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++++++++|+....+....+- +++|+|++|||||||++.|..
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHc
Confidence 48999999999887766654333 689999999999999999986
No 280
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.18 E-value=0.00012 Score=64.56 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=35.1
Q ss_pred eEEEccccccccC-cccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|+. .+.+....+- +++|+|+.|||||||++.|++-
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 5899999999953 4444443322 5999999999999999999863
No 281
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.16 E-value=0.00016 Score=65.17 Aligned_cols=46 Identities=26% Similarity=0.368 Sum_probs=35.0
Q ss_pred ceEEEccccccccCc----ccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 10 LAVRIDETTHEFSNS----HENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~----~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.++++++++++|+.. ..+....+ -+++|+|++|||||||++.|..-
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 369999999999752 23433322 36999999999999999999863
No 282
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.15 E-value=0.0002 Score=64.68 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=36.0
Q ss_pred eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|++.+.+....+ -+++|+|++|||||||++.|..-
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 4889999999987655554332 26899999999999999999863
No 283
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.14 E-value=0.00018 Score=64.86 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=35.5
Q ss_pred eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++++++++|+....+....+ -+++|+|++|||||||++.|..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHC
Confidence 3889999999987665554332 2689999999999999999986
No 284
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.14 E-value=0.0002 Score=64.95 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=36.2
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|+....+....+- +++|+|++|||||||++.|..-
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 48899999999876655543332 6899999999999999999863
No 285
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.13 E-value=0.00023 Score=57.53 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999864
No 286
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.10 E-value=0.00016 Score=62.34 Aligned_cols=43 Identities=23% Similarity=0.434 Sum_probs=32.9
Q ss_pred EEEccccccccC----cccCCCCce---e-EEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSN----SHENDDVSV---G-VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~----~~~~~~~~~---p-vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++|+. ++.+....+ + +++|+|+.|||||||++.|..
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 678888888875 444443222 2 789999999999999999984
No 287
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.09 E-value=0.00049 Score=55.66 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++|+|++||||||+++.|...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999854
No 288
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.05 E-value=0.00032 Score=57.44 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
-.+++|+|++|||||||++.|...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 358999999999999999999864
No 289
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.03 E-value=0.0002 Score=60.86 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=32.0
Q ss_pred EEEccccccccCcccCCC-----CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 12 VRIDETTHEFSNSHENDD-----VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~-----~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++++++++|+.. +.. .+ -+++|+|++|||||||++.|..-
T Consensus 2 l~~~~l~~~y~~~--l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 2 FLKVRAEKRLGNF--RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CEEEEEEEEETTE--EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEEEEEeCCE--EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 5788888888642 322 24 68999999999999999999863
No 290
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.03 E-value=0.00032 Score=55.53 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=19.0
Q ss_pred eEEEEEecCCCcHHHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYI 52 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~l 52 (293)
++|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999
No 291
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.01 E-value=0.00092 Score=58.68 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=52.3
Q ss_pred cccccEEEEEcccchH---HHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEe
Q 022736 151 VRLDSIITVVDAKNLL---FQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS 227 (293)
Q Consensus 151 ~~~d~vi~vvDa~~~~---~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~ 227 (293)
..+|.+++|+|+.+.. ..++. +...+.+...+.++|+||+|+.+.. ..+++.+..+.++..
T Consensus 83 ~~ad~vilV~D~~~~~~s~~~l~~------~l~~~~~~~~piilv~NK~DL~~~~----~v~~~~~~~~~~~~~------ 146 (301)
T 1u0l_A 83 ANVDQVILVVTVKMPETSTYIIDK------FLVLAEKNELETVMVINKMDLYDED----DLRKVRELEEIYSGL------ 146 (301)
T ss_dssp ESCCEEEEEECSSTTCCCHHHHHH------HHHHHHHTTCEEEEEECCGGGCCHH----HHHHHHHHHHHHTTT------
T ss_pred ccCCEEEEEEeCCCCCCCHHHHHH------HHHHHHHCCCCEEEEEeHHHcCCch----hHHHHHHHHHHHhhh------
Confidence 5789999999997532 11111 1222233356789999999997642 123344444443321
Q ss_pred ecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 228 VRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 228 ~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
..++.+||++|.|++++..++.
T Consensus 147 -------~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 147 -------YPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp -------SCEEECCTTTCTTHHHHHHHHS
T ss_pred -------CcEEEEECCCCcCHHHHHHHhc
Confidence 2467899999999998887765
No 292
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.01 E-value=0.00025 Score=63.65 Aligned_cols=43 Identities=28% Similarity=0.406 Sum_probs=34.0
Q ss_pred EEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 12 VRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++.+++++|+.. .+....+ -+++|+|++|||||||++.|..-
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 6788999999765 5544332 36899999999999999999863
No 293
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.01 E-value=0.00033 Score=55.47 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+|+|+|++||||||+.+.|.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999753
No 294
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.00 E-value=0.00019 Score=64.59 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=35.1
Q ss_pred eEEEccccccccCcc--cCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSH--ENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~--~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++++++++|++.+ .+....+ -+++|+|++|||||||++.|..
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 488999999998765 4443322 3689999999999999999986
No 295
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.98 E-value=0.0004 Score=57.44 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+-.+++|+|++||||||+++.|++.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4568999999999999999999975
No 296
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.97 E-value=0.00041 Score=57.12 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGK 56 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~ 56 (293)
+-.+++|+|++|||||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44578899999999999999999753
No 297
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.97 E-value=0.0003 Score=57.81 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++|+|++|||||||++.|++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4688999999999999999986
No 298
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.96 E-value=0.0015 Score=54.81 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=31.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
+-.+++++|++|+||||++-.++.. ..+.++.++....+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~ 52 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT 52 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc
Confidence 3468999999999999988777654 458899988776653
No 299
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.96 E-value=0.00032 Score=56.90 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 022736 34 VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++|+|++||||||+++.|+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999999999864
No 300
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.96 E-value=0.00039 Score=59.44 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=30.6
Q ss_pred eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
++++++++++ +.+..... -+++|+|+.|||||||++.|..-
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 5788888876 33333222 26899999999999999999853
No 301
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.96 E-value=0.00032 Score=56.42 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=27.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d 67 (293)
+++++|+|++|||||||++.|++. ..+.+.+.+..+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 578999999999999999999874 335556666644
No 302
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.95 E-value=0.00042 Score=55.39 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+|+++|++||||||+.+.|.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
No 303
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.94 E-value=0.00055 Score=55.32 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+..+|+|+|++||||||+.+.|.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999753
No 304
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.93 E-value=0.00071 Score=59.45 Aligned_cols=88 Identities=20% Similarity=0.254 Sum_probs=50.8
Q ss_pred ccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeec
Q 022736 150 AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR 229 (293)
Q Consensus 150 ~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~ 229 (293)
...+|.+++|+|+.+........ ..+...+.....+.++|+||+|+.+..+. ....++.+..+.++
T Consensus 77 ~~naD~vliV~d~~~p~~s~~~l---~~~l~~~~~~~~~~ilV~NK~DL~~~~~v-~~~~~~~~~~~~~g---------- 142 (302)
T 2yv5_A 77 VANVDRVIIVETLKMPEFNNYLL---DNMLVVYEYFKVEPVIVFNKIDLLNEEEK-KELERWISIYRDAG---------- 142 (302)
T ss_dssp EESCCEEEEEECSTTTTCCHHHH---HHHHHHHHHTTCEEEEEECCGGGCCHHHH-HHHHHHHHHHHHTT----------
T ss_pred HHhcCEEEEEEECCCCCCCHHHH---HHHHHHHHhCCCCEEEEEEcccCCCcccc-HHHHHHHHHHHHCC----------
Confidence 46789999999997532111110 00222333345678999999999864210 00233333333322
Q ss_pred CCCCchhhcccccCCcchhhhhhhhhh
Q 022736 230 CQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 230 ~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
-+++.+||++|+|+++|..++.
T Consensus 143 -----~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 -----YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp -----CEEEECCTTTCTTHHHHHHHTT
T ss_pred -----CeEEEEECCCCCCHHHHHhhcc
Confidence 1356788888888887776654
No 305
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.93 E-value=0.00036 Score=55.50 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++|+|++||||||+.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999853
No 306
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=96.93 E-value=0.019 Score=47.31 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=24.7
Q ss_pred eEEEEEe-cCCCcHHHHHHHHHcc--CCCCeEEEEE
Q 022736 33 GVTVITG-FLGAGKSTLVNYILNG--KHGKRIAVIL 65 (293)
Q Consensus 33 pvi~i~G-~~gaGKTTlin~ll~~--~~~~~vavv~ 65 (293)
+++.|+| -.|+||||+.-.|... ..|+++.++.
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 3455665 5899999999988764 4588988853
No 307
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.90 E-value=0.00067 Score=55.51 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=23.8
Q ss_pred CCCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 28 DDVSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 28 ~~~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
...+..+|+|+|++||||||+.+.|.+.
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456678999999999999999999864
No 308
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.88 E-value=0.00043 Score=56.95 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGK 56 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~ 56 (293)
+-.+++|+|++||||||+++.|.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45678999999999999999998753
No 309
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.88 E-value=0.00054 Score=55.40 Aligned_cols=21 Identities=48% Similarity=0.651 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 022736 34 VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~ 54 (293)
.++|+|++|||||||++.|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999985
No 310
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.88 E-value=0.00054 Score=55.47 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++|+|++||||||+++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999985
No 311
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.87 E-value=0.00058 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+|+|.|++||||||+.+.|.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 312
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.86 E-value=0.001 Score=54.69 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=26.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d 67 (293)
..+++|+|++||||||+.+.|.+... .+.++..|
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~--~~~~i~~D 54 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP--NCSVISQD 54 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST--TEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC--CcEEEeCC
Confidence 45789999999999999999985311 56676655
No 313
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.84 E-value=0.00059 Score=56.29 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
-+++|+|++|||||||++.|...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37899999999999999999853
No 314
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.83 E-value=0.0006 Score=57.08 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+-.+++|+|++|||||||++.|+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3458899999999999999999864
No 315
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.83 E-value=0.00065 Score=55.96 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=26.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF 68 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~ 68 (293)
.-+++|+|++|||||||++.|.+.. +.+++++..+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~-~~~i~~v~~d~ 41 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL-GERVALLPMDH 41 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH-GGGEEEEEGGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh-CCCeEEEecCc
Confidence 3579999999999999999998421 01377776554
No 316
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.82 E-value=0.0006 Score=54.56 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYIL 53 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll 53 (293)
-.+++++|++|||||||++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3479999999999999999865
No 317
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.82 E-value=0.00067 Score=54.70 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=25.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEE
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVI 64 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv 64 (293)
.+|+|+|++||||||+.+.|.+. ..|..+..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 57899999999999999999864 234445555
No 318
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.81 E-value=0.00062 Score=58.37 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.3
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+.++|+|+|++||||||+.+.|.+.
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999863
No 319
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.80 E-value=0.00061 Score=56.25 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=27.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccC--CCCeEEEEEcC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGK--HGKRIAVILNE 67 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~--~~~~vavv~~d 67 (293)
+-.+++|+|++|||||||++.|.... .|.+++.+..+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d 59 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence 45689999999999999999997631 14456666643
No 320
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.79 E-value=0.00089 Score=54.05 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=26.5
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEE
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL 65 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~ 65 (293)
.+-.+++++|++||||||+.+.|... ..+.++.++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 34567899999999999999999764 2344454443
No 321
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=96.77 E-value=0.0087 Score=52.81 Aligned_cols=148 Identities=17% Similarity=0.245 Sum_probs=79.0
Q ss_pred CceeEEEEEe---cCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCC-----Ccchhhhhhc---cCcc
Q 022736 30 VSVGVTVITG---FLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEG-----GALVEEWVEL---ANGC 98 (293)
Q Consensus 30 ~~~pvi~i~G---~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~-----~~~~~~~~~l---~~gc 98 (293)
..+|||.| | .-|+|||.++-.|.+..++++++|++...|.... ....+....+ ....+|-..+ ..+|
T Consensus 34 ~~vPVI~V-GNitvGGTGKTP~vi~L~~~L~~~~~~ilsRGYg~~~~-~~~~v~~~~~~~~~~~~~GDEp~lla~~~~~~ 111 (315)
T 4ehx_A 34 LPVPVISV-GNLSVGGSGKTSFVMYLADLLKDKRVCILSRGYKRKSK-GTLIVSEYGNLKVSWEEAGDEPYLMAKLLPHV 111 (315)
T ss_dssp CSSCEEEE-EESBSSCCSHHHHHHHHHHHTTTSCEEEEECCCSCSSC-SEEEEEETTEECSCHHHHCHHHHHHHHHCTTS
T ss_pred CCCCEEEE-CCEEeCCCChHHHHHHHHHHHhhcCceEEeeccccccc-CceEEeecccccCCcccccCHHHHHHHhCCCc
Confidence 35787764 4 5699999999999987667889999988875211 1111111100 0011333333 2345
Q ss_pred eeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCc
Q 022736 99 ICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (293)
Q Consensus 99 icc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~ 178 (293)
.....++....... ++. ..+.|+||.|=. +-+ .. ..-|.=|.++|...+ .....+...+
T Consensus 112 ~v~v~~~R~~~~~~-~~~-~~~~dviIlDDG-fQh-----------~~----l~rDl~Ivv~d~~~g---ng~lLPaGpL 170 (315)
T 4ehx_A 112 SVVASEDRYKGGLL-ALE-KLSPEVFILDDG-FQH-----------RK----LHRDLNILLLKKKDL---KDRLLPAGNL 170 (315)
T ss_dssp EEEEESSHHHHHHH-HHH-HHCCSEEEEETC-TTC-----------TT----BCCSEEEEEEEHHHH---TCCBTTTSSB
T ss_pred eEEEecchHHHHHH-Hhh-ccCCcEEEecCc-ccc-----------cc----ccccceEEEeeeecc---CCeecccccc
Confidence 44333333332222 222 356899998832 211 11 223344666785322 1111111223
Q ss_pred hHHHHHHhccCEEEEeCCCCCC
Q 022736 179 PEAIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 179 ~~~~~qi~~a~iivlNK~D~~~ 200 (293)
.|....+..+|++++|+.+...
T Consensus 171 REp~~~l~raD~iii~~~~~~~ 192 (315)
T 4ehx_A 171 REPLKEIRRADALVLTYQEVEP 192 (315)
T ss_dssp SSCGGGGGGCSEEEEECTTTSC
T ss_pred cCChhHhhhccEEEEecCCcch
Confidence 3455778899999999987543
No 322
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.77 E-value=0.00067 Score=55.59 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
-.+++|+|++||||||+++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 323
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.77 E-value=0.0085 Score=57.41 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=32.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
...+++++|..|+||||+.-.|... ..|+++.++..|+.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~ 47 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA 47 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 3457889999999999999988663 45999999999974
No 324
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.77 E-value=0.00091 Score=64.18 Aligned_cols=45 Identities=24% Similarity=0.359 Sum_probs=35.9
Q ss_pred eEEEccccccccC--cccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|+. ++.+.+...- +++++|+.|||||||++.|.+-
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999974 4455544332 5999999999999999999863
No 325
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.74 E-value=0.00078 Score=56.72 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=25.8
Q ss_pred eEEEEEecCCCcHHHHHHHHH--cc-CCCCeEEEEEcC
Q 022736 33 GVTVITGFLGAGKSTLVNYIL--NG-KHGKRIAVILNE 67 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll--~~-~~~~~vavv~~d 67 (293)
-+++|+|++|||||||++.|+ .. ..+.++.++..+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 379999999999999999887 22 334455555544
No 326
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.74 E-value=0.001 Score=53.38 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=27.5
Q ss_pred EEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+++.|+ .++............+++|+|+.||||||++.+|.-
T Consensus 7 l~i~nf-~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 7 LELKGF-KSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEESB-GGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEeCe-EeecCccEEEecCCCcEEEECCCCCCHHHHHHHHHH
Confidence 566666 344211111222234899999999999999999863
No 327
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.72 E-value=0.00077 Score=55.18 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+..+|+|+|++||||||+.+.|.+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4558999999999999999999853
No 328
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.72 E-value=0.00078 Score=54.93 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.8
Q ss_pred EEEEecCCCcHHHHHHHHHccC
Q 022736 35 TVITGFLGAGKSTLVNYILNGK 56 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~ 56 (293)
|+|+||+|||||||+++|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6789999999999999999764
No 329
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.71 E-value=0.0008 Score=54.13 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+.|+++|++||||||+.+.|.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999999753
No 330
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.71 E-value=0.00085 Score=54.83 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++|+|++||||||+++.|.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999865
No 331
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.70 E-value=0.0014 Score=53.41 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=23.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeE
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRI 61 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~v 61 (293)
..+|+|+|++||||||+.+.|.+...|.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~ 33 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTI 33 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCce
Confidence 457899999999999999999875433333
No 332
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.70 E-value=0.00081 Score=55.93 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
..+|+|+|++||||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 333
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.70 E-value=0.00083 Score=56.93 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+..+++|+|++||||||+++.|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 334
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.70 E-value=0.0013 Score=58.36 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=28.7
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEEcC
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNE 67 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~----~~~~~vavv~~d 67 (293)
.+.-+++|+|++|||||||++.|... ..+.++.++..|
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 34558999999999999999998653 124567777655
No 335
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.69 E-value=0.0011 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
..+|+|+|++||||||+.+.|.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 336
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.69 E-value=0.0011 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
..+++|+|++||||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 337
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.68 E-value=0.0056 Score=54.98 Aligned_cols=88 Identities=22% Similarity=0.216 Sum_probs=52.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcce-eeccchhHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI-CCTVKHSLVQA 110 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gci-cc~~~~~l~~~ 110 (293)
++.|.|++|+|||||+..++.. ..+.++..+..+... +......- ++. ..+-.+ +.....++...
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~----~~~ra~rl--gv~------~~~l~i~~~~~~e~~l~~ 130 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL----DPVYAKNL--GVD------LKSLLISQPDHGEQALEI 130 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHHH--TCC------GGGCEEECCSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc----chHHHHHc--CCc------hhhhhhhhccCHHHHHHH
Confidence 8999999999999999999864 346778888766543 11111100 000 011111 12233455555
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCc
Q 022736 111 LEQLVQRKERLDHILLETTGLANP 134 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~ 134 (293)
+..++. ...+++++||.....-+
T Consensus 131 ~~~l~~-~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 131 VDELVR-SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHHH-TSCCSEEEEECTTTCCC
T ss_pred HHHHhh-hcCCCeEEehHhhhhcC
Confidence 665554 36789999998775444
No 338
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.68 E-value=0.0017 Score=58.67 Aligned_cols=88 Identities=13% Similarity=0.080 Sum_probs=52.2
Q ss_pred ccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCC
Q 022736 152 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQ 231 (293)
Q Consensus 152 ~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~ 231 (293)
..+.+++|+|+..+...+.. .+..... ..+.++|+||+|+++... ..+.+.+.++..... ..
T Consensus 69 ~~~~il~VvD~~d~~~~~~~-----~l~~~~~--~~p~ilV~NK~DL~~~~~---~~~~~~~~l~~~~~~--------~g 130 (368)
T 3h2y_A 69 SDALVVKIVDIFDFNGSWLP-----GLHRFVG--NNKVLLVGNKADLIPKSV---KHDKVKHWMRYSAKQ--------LG 130 (368)
T ss_dssp SCCEEEEEEETTSHHHHCCT-----THHHHSS--SSCEEEEEECGGGSCTTS---CHHHHHHHHHHHHHH--------TT
T ss_pred cCcEEEEEEECCCCcccHHH-----HHHHHhC--CCcEEEEEEChhcCCccc---CHHHHHHHHHHHHHH--------cC
Confidence 45589999999875422110 0111111 467899999999986542 233444443322110 00
Q ss_pred CCchhhcccccCCcchhhhhhhhhhh
Q 022736 232 VDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 232 ~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.....++.+||++|.|++++..++.+
T Consensus 131 ~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 131 LKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp CCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 11235788999999999998888753
No 339
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.68 E-value=0.00074 Score=56.33 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++|+|++|||||||++.|+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999864
No 340
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.68 E-value=0.00074 Score=54.71 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+.++|+|+|++||||||+.+.|.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
No 341
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.66 E-value=0.00084 Score=53.85 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.1
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+.++|+|+|++||||||+.+.|.+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999753
No 342
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.65 E-value=0.0011 Score=54.38 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
..+|+|.|++||||||+.+.|.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999999874
No 343
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.65 E-value=0.0012 Score=54.09 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.2
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+..+|+|+|.+||||||+.+.|.+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34458999999999999999999763
No 344
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.64 E-value=0.0011 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+.+.|+|+|++||||||+.+.|.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999853
No 345
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.63 E-value=0.00081 Score=53.73 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
++.|+|+|++||||||+.+.|.+.
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 346889999999999999999753
No 346
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.63 E-value=0.0013 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
-.+|+++|++||||||+.+.|.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999975
No 347
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.62 E-value=0.0013 Score=53.91 Aligned_cols=26 Identities=38% Similarity=0.426 Sum_probs=22.5
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHc
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
..+-.+++|+|++||||||+.+.|..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999975
No 348
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.62 E-value=0.0012 Score=54.04 Aligned_cols=26 Identities=27% Similarity=0.162 Sum_probs=21.5
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+.-+|+|+|++||||||+.+.|.+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33347899999999999999999753
No 349
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.62 E-value=0.0043 Score=55.61 Aligned_cols=87 Identities=18% Similarity=0.194 Sum_probs=51.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCccee-eccchhHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKHSLVQA 110 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic-c~~~~~l~~~ 110 (293)
++.|.|++|+|||||+..++.. ..+.++..+..+... +...... -+...+... +. ....+++...
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~----~~~~a~~--lG~~~~~l~------i~~~~~~e~~l~~ 130 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL----DPEYAKK--LGVDTDSLL------VSQPDTGEQALEI 130 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHH--TTCCGGGCE------EECCSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc----CHHHHHH--cCCCHHHeE------EecCCCHHHHHHH
Confidence 7999999999999999888753 347788888877543 1111110 011111110 11 1122344444
Q ss_pred HHHHHhhcCCCCEEEEecCCCCC
Q 022736 111 LEQLVQRKERLDHILLETTGLAN 133 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~ 133 (293)
+..+.. ..+++++|||.+...-
T Consensus 131 ~~~l~~-~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 131 ADMLVR-SGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHHHT-TTCCSEEEEECGGGCC
T ss_pred HHHHHh-cCCCCEEEEcChHhhc
Confidence 554543 3579999999998544
No 350
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.62 E-value=0.0064 Score=54.84 Aligned_cols=88 Identities=22% Similarity=0.232 Sum_probs=53.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
++.|.|++|+|||||...++.. ..+.+++++..+... +...... -++..+... ..++...+++...+
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~----~~~~a~~--~g~d~~~l~-----i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL----DPVYARA--LGVNTDELL-----VSQPDNGEQALEIM 144 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHH--TTCCGGGCE-----EECCSSHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh----hHHHHHH--cCCCHHHce-----eecCCcHHHHHHHH
Confidence 7889999999999999988764 347789999988653 1111111 011001100 01112234555556
Q ss_pred HHHHhhcCCCCEEEEecCCCCC
Q 022736 112 EQLVQRKERLDHILLETTGLAN 133 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~ 133 (293)
..+.. ..++++||||..+...
T Consensus 145 ~~l~~-~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 145 ELLVR-SGAIDVVVVDSVAALT 165 (366)
T ss_dssp HHHHT-TTCCSEEEEECTTTCC
T ss_pred HHHHh-cCCCCEEEEeChHHhc
Confidence 65554 3679999999999554
No 351
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.62 E-value=0.0014 Score=54.03 Aligned_cols=35 Identities=29% Similarity=0.220 Sum_probs=29.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF 68 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~ 68 (293)
.+++|+|++|||||||++.++. ..+.++.++..+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCC
Confidence 3799999999999999999987 4567888887765
No 352
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.60 E-value=0.0012 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++|+|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999984
No 353
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.59 E-value=0.0011 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+|+|+|++||||||+.+.|.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999763
No 354
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.59 E-value=0.0012 Score=57.37 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=51.8
Q ss_pred hccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEE
Q 022736 147 LESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV 224 (293)
Q Consensus 147 ~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i 224 (293)
......+|.|+.|+|+........ . .+.++ ..+.++|+||+|+++.. ..+...+.++..+
T Consensus 18 ~~~l~~aDvVl~VvDAr~p~~~~~--------~-~l~~~l~~kp~ilVlNK~DL~~~~----~~~~~~~~~~~~g----- 79 (282)
T 1puj_A 18 TEKLKLIDIVYELVDARIPMSSRN--------P-MIEDILKNKPRIMLLNKADKADAA----VTQQWKEHFENQG----- 79 (282)
T ss_dssp HHHGGGCSEEEEEEETTSTTTTSC--------H-HHHHHCSSSCEEEEEECGGGSCHH----HHHHHHHHHHTTT-----
T ss_pred HHHHhhCCEEEEEEeCCCCCccCC--------H-HHHHHHCCCCEEEEEECcccCCHH----HHHHHHHHHHhcC-----
Confidence 345578999999999976432110 1 11221 46789999999998742 2233333332111
Q ss_pred EEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 225 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 225 ~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+++.+|+.++.|++++..++.+
T Consensus 80 ----------~~~i~iSA~~~~gi~~L~~~i~~ 102 (282)
T 1puj_A 80 ----------IRSLSINSVNGQGLNQIVPASKE 102 (282)
T ss_dssp ----------CCEEECCTTTCTTGGGHHHHHHH
T ss_pred ----------CcEEEEECCCcccHHHHHHHHHH
Confidence 14567899999999888776543
No 355
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.58 E-value=0.0019 Score=56.32 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.3
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+..+++++|++||||||+.+.|.+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34557889999999999999999864
No 356
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.57 E-value=0.0012 Score=54.23 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+..+|+|+|++||||||+.+.|.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999864
No 357
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.57 E-value=0.0013 Score=53.12 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
..+|+|+|.+||||||+.+.|.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999753
No 358
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.55 E-value=0.00079 Score=56.43 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=15.8
Q ss_pred eEEEEEecCCCcHHHHHHHHH-cc
Q 022736 33 GVTVITGFLGAGKSTLVNYIL-NG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll-~~ 55 (293)
.+++|+|++||||||+++.|. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 479999999999999999999 54
No 359
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.54 E-value=0.0014 Score=53.25 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=22.6
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+..+|+|+|++||||||+.+.|.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34568999999999999999999864
No 360
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.54 E-value=0.0013 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999985
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.53 E-value=0.0015 Score=54.51 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.9
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+.++|+|+|+|||||+|....|.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999863
No 362
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.53 E-value=0.0013 Score=59.56 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=53.9
Q ss_pred cccccEEEEEcccchHHHHhhhcccCCchHHHHHH-hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeec
Q 022736 151 VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR 229 (293)
Q Consensus 151 ~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~ 229 (293)
.+.+.+++|+|+..+.... ..+..+.+ ..+.++|+||+|+++.+. ..+.+.+.++......
T Consensus 70 ~~~~lil~VvD~~d~~~s~--------~~~l~~~l~~~piilV~NK~DLl~~~~---~~~~~~~~l~~~~~~~------- 131 (369)
T 3ec1_A 70 ESKALVVNIVDIFDFNGSF--------IPGLPRFAADNPILLVGNKADLLPRSV---KYPKLLRWMRRMAEEL------- 131 (369)
T ss_dssp HHCCEEEEEEETTCSGGGC--------CSSHHHHCTTSCEEEEEECGGGSCTTC---CHHHHHHHHHHHHHTT-------
T ss_pred ccCcEEEEEEECCCCCCch--------hhHHHHHhCCCCEEEEEEChhcCCCcc---CHHHHHHHHHHHHHHc-------
Confidence 3567899999998765311 11111112 467899999999987542 2344444443321110
Q ss_pred CCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 230 CQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 230 ~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
...+..++.+||++|.|+++|.+.+.+
T Consensus 132 -g~~~~~v~~iSA~~g~gi~~L~~~I~~ 158 (369)
T 3ec1_A 132 -GLCPVDVCLVSAAKGIGMAKVMEAINR 158 (369)
T ss_dssp -TCCCSEEEECBTTTTBTHHHHHHHHHH
T ss_pred -CCCcccEEEEECCCCCCHHHHHHHHHh
Confidence 011235788999999999988887754
No 363
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.53 E-value=0.014 Score=47.58 Aligned_cols=38 Identities=26% Similarity=0.197 Sum_probs=29.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
-.+++++|+.||||||.+-.++.. ..+.++.++.....
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d 47 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID 47 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 358999999999999988887764 36889999875443
No 364
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.52 E-value=0.0012 Score=56.66 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+-.+++|+|+.|||||||++.|++.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3458999999999999999999863
No 365
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.51 E-value=0.0078 Score=54.06 Aligned_cols=88 Identities=18% Similarity=0.272 Sum_probs=52.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCccee-eccchhHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKHSLVQA 110 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic-c~~~~~l~~~ 110 (293)
+++|.|++|+|||||...++.. ..+.+++++..+... +......- +...+... +. .....++...
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~----~~~~a~~~--g~~~~~l~------i~~~~~~e~~~~~ 132 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----DPIYARKL--GVDIDNLL------CSQPDTGEQALEI 132 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHHT--TCCGGGCE------EECCSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc----cHHHHHHc--CCChhhee------eeCCCCHHHHHHH
Confidence 7999999999999999998764 346788888887543 11111110 11001100 11 1122344555
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCc
Q 022736 111 LEQLVQRKERLDHILLETTGLANP 134 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~ 134 (293)
+..+.. ...++++|||..+...+
T Consensus 133 ~~~l~~-~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 133 CDALAR-SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHH-HTCCSEEEEECGGGCCC
T ss_pred HHHHHh-ccCCCEEEEcCHHHhcc
Confidence 555544 36799999999995543
No 366
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.50 E-value=0.0025 Score=55.47 Aligned_cols=36 Identities=31% Similarity=0.332 Sum_probs=29.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFG 69 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g 69 (293)
+++|+|++|+|||||++.++.. ..|.++.++..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~ 75 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES 75 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC
Confidence 7999999999999999998764 33667888877654
No 367
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.48 E-value=0.0014 Score=62.97 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=35.3
Q ss_pred eEEEccccccccC--cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSN--SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|+. ++.+.+... -+++++|+.|||||||++.|.+-
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999974 344443322 25999999999999999999864
No 368
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.47 E-value=0.0016 Score=53.93 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
..+|+|+|.+||||||+.+.|.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 369
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.46 E-value=0.0022 Score=52.54 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=26.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d 67 (293)
+..+++|+|++||||||+++.|... ..+.++.+...|
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 4568999999999999999999763 124445554433
No 370
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.45 E-value=0.0016 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
-+++|+|++|||||||++.|+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 371
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.45 E-value=0.0017 Score=53.81 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=28.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
-+++|+|++|||||||++.++.. ..+.++.++..+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 37899999999999999999853 23557777776653
No 372
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.43 E-value=0.0016 Score=55.58 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
++++|+|++|||||||.+.|.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57899999999999999999864
No 373
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.43 E-value=0.0015 Score=52.96 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+..+|+|+|++||||||+.+.|.+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999853
No 374
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.43 E-value=0.038 Score=49.75 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=30.9
Q ss_pred CCceeEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEEcC
Q 022736 29 DVSVGVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (293)
Q Consensus 29 ~~~~pvi~i~-G~~gaGKTTlin~ll~~--~~~~~vavv~~d 67 (293)
..+..+|+|+ |..|+||||+.-.|... ..|+++.++..|
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 4566777776 59999999999888653 348999999988
No 375
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.42 E-value=0.003 Score=54.79 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.8
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHc
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+..+|+|+|++||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999983
No 376
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.42 E-value=0.0012 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
++|+|+|++||||||+.+.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999975
No 377
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.41 E-value=0.0017 Score=55.00 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
-+++|+|+.|||||||++.|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 378
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.40 E-value=0.0017 Score=52.85 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 022736 34 VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+|+|.|++||||||+.+.|.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6889999999999999999864
No 379
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.40 E-value=0.0016 Score=62.72 Aligned_cols=45 Identities=18% Similarity=0.348 Sum_probs=35.8
Q ss_pred eEEEccccccccC-cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSN-SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.++++|++++|+. .+.+.+... -+++|+|+.|||||||++.|++-
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999964 345554332 36999999999999999999864
No 380
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.40 E-value=0.001 Score=53.22 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=17.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
..+|+|+|++||||||+.+.|.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999754
No 381
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.40 E-value=0.0013 Score=54.46 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=19.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
-+++|+|+.|||||||++.|..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999984
No 382
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.38 E-value=0.0028 Score=55.70 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=26.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEEcC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNE 67 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~----~~~~~vavv~~d 67 (293)
+.-+++|+|++|||||||++.|... ..+.++.++..+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d 119 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence 3458999999999999999999763 223345555433
No 383
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.38 E-value=0.0017 Score=58.33 Aligned_cols=21 Identities=38% Similarity=0.730 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 022736 34 VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++|+|++|||||||+|.|+.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 789999999999999999995
No 384
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.37 E-value=0.0011 Score=54.56 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 022736 34 VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+|+|.|++||||||+++.|.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999999999864
No 385
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.36 E-value=0.0019 Score=53.88 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+..+|+|.|++||||||+.+.|.+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999854
No 386
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.34 E-value=0.0019 Score=53.64 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
...|+|+|++||||||+.+.|.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999753
No 387
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.34 E-value=0.00055 Score=58.54 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=23.3
Q ss_pred eEEEccc-cccc-cCcccCCC-----Cc---eeEEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDET-THEF-SNSHENDD-----VS---VGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~-~~~~-~~~~~~~~-----~~---~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.++++++ +++| +....+.. .+ -.+++|+|++||||||+.+.|.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5788898 8888 54433332 12 45799999999999999999975
No 388
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.33 E-value=0.0016 Score=51.67 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
++|+|+|++||||||+.+.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 389
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.33 E-value=0.0019 Score=56.96 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=29.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEEcCC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEF 68 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~---~~~-~~vavv~~d~ 68 (293)
+--+++|+|++|||||||++.|... ..| .+++++.-+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 4558999999999999999998763 223 4677777654
No 390
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.32 E-value=0.0024 Score=64.51 Aligned_cols=45 Identities=24% Similarity=0.154 Sum_probs=35.1
Q ss_pred ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
..+...+++++|+.+..+....+- +++|+|+.|||||||++.|..
T Consensus 434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 345555899999876666544333 599999999999999999984
No 391
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.32 E-value=0.002 Score=56.61 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++|++|||||||+|.|+ .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 378999999999999999998 5
No 392
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.31 E-value=0.0021 Score=51.81 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 022736 34 VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+|+|+|.+||||||+.+.|.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999863
No 393
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.30 E-value=0.0017 Score=52.95 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 022736 34 VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++|+|++|||||||++.|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999999875
No 394
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.29 E-value=0.0022 Score=54.56 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=21.9
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+..+|+|+|++||||||+.+.|.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999763
No 395
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.29 E-value=0.0021 Score=51.94 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=24.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
+|+|+|.+||||||+.+.|.+. ..|..+ +...+++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v-~~~~~~~ 38 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKV-ILKREPG 38 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-E-EEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE-EEeeCCC
Confidence 5889999999999999999864 224444 3334444
No 396
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.29 E-value=0.0025 Score=54.02 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+...|+|+|++||||||+.+.|.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455789999999999999999985
No 397
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.29 E-value=0.0018 Score=53.87 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
...|+|.|++||||||+.+.|.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999853
No 398
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.28 E-value=0.0014 Score=62.97 Aligned_cols=45 Identities=24% Similarity=0.346 Sum_probs=35.0
Q ss_pred eEEEccccccccC--cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSN--SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|+. ++.+.+... -+++|+|+.|||||||++.|++-
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999954 344444322 25999999999999999999864
No 399
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.28 E-value=0.0034 Score=52.59 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=29.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
+++|.|++|||||||+..++.. ..+.++.++..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 7899999999999998887653 34678888887654
No 400
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.28 E-value=0.0039 Score=57.27 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=26.8
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEE
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL 65 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~ 65 (293)
.+-.+++|+|+.|||||||++.|+.. ....++.++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 34568999999999999999999874 2234454444
No 401
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.24 E-value=0.0028 Score=55.36 Aligned_cols=26 Identities=27% Similarity=0.163 Sum_probs=22.6
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+..+|+|+|++|||||||++.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998764
No 402
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.24 E-value=0.0092 Score=49.99 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=29.2
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
+++.|.+|+||||++-.+... ..|.++.++..|+..
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~ 46 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHG 46 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCC
Confidence 677999999999998777653 458899888888753
No 403
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.24 E-value=0.0011 Score=57.84 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=25.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d 67 (293)
+.++|+|+|++||||||+.+.|.+. ..+.++.++..|
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D 42 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence 4568999999999999999999763 123446676644
No 404
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=96.23 E-value=0.0096 Score=53.50 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=30.0
Q ss_pred eEEEE-EecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 33 GVTVI-TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 33 pvi~i-~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
.+|+| .+..|+||||+.-.|... ..|++|.+|..|+..
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~ 42 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQC 42 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCC
Confidence 34444 588999999999888653 468999999999874
No 405
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.23 E-value=0.0022 Score=56.33 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=31.8
Q ss_pred EEEccccccccCcccCC----C-CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 12 VRIDETTHEFSNSHEND----D-VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~----~-~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++.+++++|+ .+.+. . .+--+++|+|++|||||||++.|++-
T Consensus 102 i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 102 FNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 67788888886 33322 1 12347999999999999999999853
No 406
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.21 E-value=0.0027 Score=54.06 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+..+|+|+|++||||||+++.|.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999984
No 407
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.21 E-value=0.003 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+-..++|.|++|+|||||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999863
No 408
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.20 E-value=0.0026 Score=57.20 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
-.+++|+|+.|||||||++.++..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999999863
No 409
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.20 E-value=0.0043 Score=54.63 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=26.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d 67 (293)
+.++++|+|++|||||||...|.+.. ...+|+.|
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~---~~~iis~D 35 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRL---NGEVISGD 35 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT---TEEEEECC
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhC---ccceeecC
Confidence 35789999999999999999998753 23566654
No 410
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.20 E-value=0.0022 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.219 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
-..+++.|++|+|||||++.+...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999853
No 411
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.19 E-value=0.0016 Score=62.73 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=34.2
Q ss_pred EEEccccccccCc---ccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 12 VRIDETTHEFSNS---HENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 12 ~~~~~~~~~~~~~---~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++++++++|+.+ +.+.+... -+++|+|+.|||||||++.|.+-
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999753 23433222 25999999999999999999864
No 412
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.18 E-value=0.001 Score=58.52 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++|+|++|||||||+|.|+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4889999999999999999984
No 413
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.18 E-value=0.0026 Score=52.41 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 022736 34 VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~ 54 (293)
.|+|+|++||||||+.+.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999999975
No 414
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.17 E-value=0.0025 Score=54.23 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.4
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+..+++++|++||||||+.+.|.+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567899999999999999999864
No 415
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.17 E-value=0.0027 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
-.+++|+|++||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34788999999999999999975
No 416
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.16 E-value=0.0024 Score=54.85 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=50.0
Q ss_pred hccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEE
Q 022736 147 LESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR 226 (293)
Q Consensus 147 ~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~ 226 (293)
......+|.|+.|+|+......... . .. ++ ..+-++|+||+|+++.. ..+.+.+.++..+
T Consensus 16 ~~~l~~~D~vl~VvDar~P~~~~~~--~---l~-ll---~k~~iivlNK~DL~~~~----~~~~~~~~~~~~g------- 75 (262)
T 3cnl_A 16 KDLLRLVNTVVEVRDARAPFATSAY--G---VD-FS---RKETIILLNKVDIADEK----TTKKWVEFFKKQG------- 75 (262)
T ss_dssp HHHHTTCSEEEEEEETTSTTTTSCT--T---SC-CT---TSEEEEEEECGGGSCHH----HHHHHHHHHHHTT-------
T ss_pred HHHHhhCCEEEEEeeCCCCCcCcCh--H---HH-hc---CCCcEEEEECccCCCHH----HHHHHHHHHHHcC-------
Confidence 3445688999999999864332111 0 11 11 67899999999998742 2233344443321
Q ss_pred eecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 227 SVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 227 ~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.++ .+|+.++.|+++|..++.+
T Consensus 76 --------~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 76 --------KRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp --------CCE-EECCTTSCHHHHHHHHCCC
T ss_pred --------CeE-EEECCCCcCHHHHHHHHHH
Confidence 123 5677788887777766644
No 417
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.15 E-value=0.0048 Score=58.20 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=24.6
Q ss_pred EEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEE
Q 022736 34 VTVITGFLGAGKSTLVNYILNG-KHGKRIAVIL 65 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~ 65 (293)
.++|+|++||||||+++.|+.. ....++..+.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 4899999999999999999875 3344444443
No 418
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.15 E-value=0.0034 Score=57.67 Aligned_cols=29 Identities=38% Similarity=0.391 Sum_probs=24.2
Q ss_pred CCCCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 27 NDDVSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 27 ~~~~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
....+..+|+++|++||||||+.+.|.+.
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 33456678999999999999999999853
No 419
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.14 E-value=0.0026 Score=61.24 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=30.1
Q ss_pred ccccccccCcc-cCCCC----ceeEEEEEecCCCcHHHHHHHHHc
Q 022736 15 DETTHEFSNSH-ENDDV----SVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 15 ~~~~~~~~~~~-~~~~~----~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
++++++|+... .+.+. +=-+++|+|+.|||||||++.|..
T Consensus 95 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp GSEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhC
Confidence 78888887642 33222 223799999999999999999985
No 420
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.14 E-value=0.0019 Score=61.90 Aligned_cols=45 Identities=27% Similarity=0.472 Sum_probs=35.0
Q ss_pred eEEEccccccccC--cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSN--SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|+. .+.+.+... -+++++|+.|||||||++.|++-
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 5899999999975 234443322 26999999999999999999864
No 421
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.12 E-value=0.0029 Score=50.01 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+.+|+|+|.+||||||+.+.|.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999975
No 422
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.10 E-value=0.013 Score=51.69 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=32.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
..+++++|..|+||||+.-.|... ..|+++.++..|+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 457788999999999999988653 45999999999984
No 423
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.09 E-value=0.0031 Score=49.68 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 022736 34 VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~ 54 (293)
.|+|+|.+||||||+.+.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999975
No 424
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.09 E-value=0.0047 Score=55.59 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 022736 34 VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++|+|+.|||||||++.|++.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999975
No 425
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.08 E-value=0.0058 Score=54.84 Aligned_cols=121 Identities=14% Similarity=0.104 Sum_probs=63.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhh---cccCCchHHHHHH-------hccCE
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKY---RHLSSYPEAIHQI-------AFADV 190 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~---~~~~~~~~~~~qi-------~~a~i 190 (293)
..+-++||+|......+... -...++++|+|+|.+...+.+... ..+.....++..+ ..+.+
T Consensus 193 ~~l~iwDt~GQe~~r~~w~~--------yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii 264 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKKWIH--------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 264 (353)
T ss_dssp EEEEEEEECCSGGGGGGGGG--------GCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred eeEEEEeCCCchhhhHHHHH--------HHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE
Confidence 45678999997654333322 124688999999998742100000 0000011222221 34679
Q ss_pred EEEeCCCCCCCCCC-------------cchHHHHHHHHH----hhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhh
Q 022736 191 VILNKVDLVSPERS-------------GDSLDELEKEIH----EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG 253 (293)
Q Consensus 191 ivlNK~D~~~~~~~-------------~~~~~~~~~~l~----~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~ 253 (293)
+++||+|+...... ....++..+.++ .++... ... .-.++.+||++++|+..+..
T Consensus 265 Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~-------~~~-~~~~~etSA~~~~nV~~vF~ 336 (353)
T 1cip_A 265 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRK-------DTK-EIYTHFTCATDTKNVQFVFD 336 (353)
T ss_dssp EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCT-------TTC-CEEEEECCTTCHHHHHHHHH
T ss_pred EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhccc-------CCC-ceEEEEEECcCchhHHHHHH
Confidence 99999998521100 012344444443 343210 000 12356799999999998887
Q ss_pred hhhh
Q 022736 254 LLEE 257 (293)
Q Consensus 254 ~l~~ 257 (293)
++.+
T Consensus 337 ~v~~ 340 (353)
T 1cip_A 337 AVTD 340 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 426
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.07 E-value=0.0032 Score=51.93 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=19.0
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 022736 35 TVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~ 55 (293)
|+|+|++||||||+.+.|.+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999753
No 427
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.06 E-value=0.025 Score=50.56 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=32.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
...+++++|..|+||||+.-.|... ..|+++.++..|+..
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~ 66 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAH 66 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTC
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3456778999999999999888653 458999999999853
No 428
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.06 E-value=0.0049 Score=49.93 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=27.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
.+++++|++|+||||++-+++.. ..+.++.++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d 42 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKID 42 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccc
Confidence 47889999999999998666543 34778888776543
No 429
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.05 E-value=0.0028 Score=55.60 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++++|++|||||||+|.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 3789999999999999999985
No 430
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.05 E-value=0.035 Score=46.09 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=27.3
Q ss_pred eeEEEEEecCCCcHHH-HHHHHHcc-CCCCeEEEEEcCCC
Q 022736 32 VGVTVITGFLGAGKST-LVNYILNG-KHGKRIAVILNEFG 69 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTT-lin~ll~~-~~~~~vavv~~d~g 69 (293)
-.+.+++|+.|||||| |++.+.+. ..+.++.++.....
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 4578899999999999 66665442 34788888876554
No 431
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.04 E-value=0.0035 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
...|+|.|++||||||+.+.|.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999753
No 432
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.00 E-value=0.0032 Score=56.92 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
-.+++|+|++||||||+++.|++.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999999874
No 433
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.00 E-value=0.0073 Score=53.71 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=26.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d 67 (293)
.++++|+|+.|||||||...|.+.. ...+|+.|
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~D 72 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF---PLEVINSD 72 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS---CEEEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC---CCcEEccc
Confidence 4689999999999999999999743 33566654
No 434
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.99 E-value=0.0053 Score=54.56 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 022736 34 VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++|+|++|||||||++.|++.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
No 435
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.99 E-value=0.0035 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
|+|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999975
No 436
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.99 E-value=0.0048 Score=54.97 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=26.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d 67 (293)
++|+|+|++|||||||...|.+.. ...+++.|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l---~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF---NGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT---TEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc---CCceeccc
Confidence 589999999999999999998643 24566655
No 437
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.97 E-value=0.0043 Score=51.14 Aligned_cols=26 Identities=27% Similarity=0.190 Sum_probs=22.1
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+..+++|+|++||||||+.+.|.+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999753
No 438
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.97 E-value=0.0046 Score=48.30 Aligned_cols=40 Identities=30% Similarity=0.441 Sum_probs=27.6
Q ss_pred eEEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHH
Q 022736 11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL 53 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll 53 (293)
.+++.|+. ++.+..... ..++.+|+|+.||||||++.+|.
T Consensus 5 ~l~i~nf~-~~~~~~i~f--~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 5 RVTVKNFR-SHSDTVVEF--KEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEESBT-TBSSEEEEC--CSEEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCcc-cCcceEEEc--CCCeEEEECCCCCCHHHHHHHHH
Confidence 45666763 222222222 24689999999999999999986
No 439
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.97 E-value=0.0035 Score=54.72 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=23.7
Q ss_pred eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.++++++++.+ .+.+....+ -+++|+|+.|||||||++.|..-
T Consensus 40 ~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 40 SLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp ----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 57788888752 333433222 26999999999999999999863
No 440
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.95 E-value=0.004 Score=52.22 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+...|+|.|++||||||+.+.|.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999853
No 441
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.94 E-value=0.0086 Score=49.96 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=27.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--C------CCCeEEEEEcCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--K------HGKRIAVILNEF 68 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~------~~~~vavv~~d~ 68 (293)
+++|+|++|||||||+..++.. . .+.++..+..+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 7999999999999999999873 2 245666666654
No 442
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.94 E-value=0.0025 Score=64.40 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=35.1
Q ss_pred eEEEccccccccC--cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSN--SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++++|++++|+. ++.+....+ -+++|+|+.|||||||++.|...
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999964 344443332 26999999999999999999864
No 443
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.92 E-value=0.0059 Score=54.98 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=59.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhc---ccCCchHHHHH-------HhccC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYR---HLSSYPEAIHQ-------IAFAD 189 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~---~~~~~~~~~~q-------i~~a~ 189 (293)
+..+.++||+|......+... -...++++|+|+|.+...+.+.... .+.....++.. ...+.
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~--------~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFE--------CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp TEEEEEEEECC-------CTT--------SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred CeEEEEEeccchhhhhhhHHH--------HhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence 345789999997543333211 1246789999999987311000000 00001112211 13467
Q ss_pred EEEEeCCCCCCCC--------------CCcchHHHHHHHH----HhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736 190 VVILNKVDLVSPE--------------RSGDSLDELEKEI----HEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL 251 (293)
Q Consensus 190 iivlNK~D~~~~~--------------~~~~~~~~~~~~l----~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l 251 (293)
++++||+|+..+. ......++..+.+ ..++.... . . .-.++.+||++++|+..+
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~-----~--~-~~~~~~tSA~d~~nV~~v 343 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQ-----Q--R-PLYHHFTTAINTENIRLV 343 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC----------CCEEEECCTTCHHHHHHH
T ss_pred EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccC-----C--C-ceEEEEEecCCchhHHHH
Confidence 9999999986311 0001234444433 22322100 0 0 123467899999999988
Q ss_pred hhhhhh
Q 022736 252 EGLLEE 257 (293)
Q Consensus 252 ~~~l~~ 257 (293)
..++.+
T Consensus 344 F~~v~~ 349 (362)
T 1zcb_A 344 FRDVKD 349 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 444
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.90 E-value=0.0043 Score=50.68 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
--.+|+|+|.+||||||+.+.|.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999985
No 445
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.89 E-value=0.0081 Score=49.88 Aligned_cols=39 Identities=28% Similarity=0.363 Sum_probs=29.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
+-.+|+|.|.+||||||+++.|.+. ..+.++ +...+|+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~~p~~ 45 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTREPGG 45 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEESSCS
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCC
Confidence 3457889999999999999999764 345666 45556654
No 446
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.87 E-value=0.0059 Score=51.23 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=27.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEEcCCC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFG 69 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~-~~~vavv~~d~g 69 (293)
+-.+|+|.|++||||||+++.|.+... +..+ +...+++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~-~~~~~p~ 63 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDV-IMTREPG 63 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCE-EEECTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCc-eeecCCC
Confidence 456789999999999999999987521 4444 3444554
No 447
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.87 E-value=0.0045 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 022736 34 VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++|.|+|||||+|....|.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999863
No 448
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.87 E-value=0.0044 Score=51.65 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 022736 34 VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~ 55 (293)
.|+|+|++||||||+.+.|.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 449
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.87 E-value=0.0051 Score=56.62 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=31.3
Q ss_pred eEEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++.|+ ++|.....+.-....+++|+|+.|||||||++++..
T Consensus 6 ~l~~~~~-~~~~~~~~~~~~~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 6 GLELSNF-KSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EEEEESC-SSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCE-EEECCceeEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4778888 577653322212346899999999999999999864
No 450
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=95.87 E-value=0.011 Score=48.96 Aligned_cols=92 Identities=16% Similarity=-0.013 Sum_probs=51.3
Q ss_pred cccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC-CCCCCCCCcchHHHHHHHHHhhcCCCEEE
Q 022736 151 VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV-DLVSPERSGDSLDELEKEIHEINSLAHVI 225 (293)
Q Consensus 151 ~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~-D~~~~~~~~~~~~~~~~~l~~lnp~a~i~ 225 (293)
...|++|||||+...... .....+.+...++.. ...|.+|+.||. |+.++- ...++.+.|.- +. +
T Consensus 124 ~~TdglIfVVDSsD~~R~-eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Am----s~~EI~e~L~L-~~---l- 193 (227)
T 3l82_B 124 EVVDGFIYVANAEAHKRH-EWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM----PCFYLAHELHL-NL---L- 193 (227)
T ss_dssp HHCSEEEEEEECBTTCCC-CHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBC----CHHHHHHHTTG-GG---G-
T ss_pred cCCCEEEEEeccccHhHH-HHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCC----CHHHHHHHcCC-cC---C-
Confidence 468999999999753210 000000000001111 123556666995 675543 34566665532 11 0
Q ss_pred EeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 226 RSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 226 ~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
. ....+.++||.+|+|+.+-.+|+...
T Consensus 194 ~------R~W~Iq~csA~TGeGL~EGLdWL~~~ 220 (227)
T 3l82_B 194 N------HPWLVQDTEAETLTGFLNGIEWILEE 220 (227)
T ss_dssp C------SCEEEEEEETTTCTTHHHHHHHHTTT
T ss_pred C------CCEEEEEeECCCCcCHHHHHHHHHHH
Confidence 0 12568899999999999999999654
No 451
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.85 E-value=0.0033 Score=65.98 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=35.7
Q ss_pred eEEEccccccccCccc---CCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHE---NDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~---~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
.++++|++++|++++. +.+-.+- .++|+|+.|||||||++.|++-
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 5999999999986543 3333332 4899999999999999999973
No 452
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.83 E-value=0.023 Score=50.06 Aligned_cols=40 Identities=28% Similarity=0.219 Sum_probs=33.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
...||+|+|--|+||||..-.|... ..|+||.++-.|++.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~ 88 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 88 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4669999999999999998887653 469999999999853
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.82 E-value=0.0049 Score=53.59 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+|+|+|++||||||+.+.|.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 454
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.82 E-value=0.0045 Score=51.05 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 022736 34 VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~ 54 (293)
.|+|+|++||||||+.+.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999985
No 455
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.82 E-value=0.0029 Score=54.07 Aligned_cols=28 Identities=32% Similarity=0.345 Sum_probs=23.3
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccC
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGK 56 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~ 56 (293)
..+..+|+|.|..||||||+++.|.+..
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4566789999999999999999998754
No 456
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.80 E-value=0.0079 Score=52.84 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=26.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d 67 (293)
.++++|+|++|||||||...|.+.. ...+++.|
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~---~~~iis~D 42 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL---PVELISVD 42 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS---CEEEEECC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC---CCcEEecc
Confidence 5688999999999999999998753 23566654
No 457
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.78 E-value=0.0031 Score=59.88 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=27.2
Q ss_pred ccccccCcccCCC--Ccee----EEEEEecCCCcHHHHHHHHHc
Q 022736 17 TTHEFSNSHENDD--VSVG----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 17 ~~~~~~~~~~~~~--~~~p----vi~i~G~~gaGKTTlin~ll~ 54 (293)
.+|.|+... +.- -++| +++|+|+.|||||||++.|..
T Consensus 5 ~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 5 VIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp EEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 467777633 332 2222 799999999999999999985
No 458
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.75 E-value=0.0054 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+..++.|+|++||||||+.+.|.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 459
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.75 E-value=0.038 Score=46.37 Aligned_cols=39 Identities=23% Similarity=0.084 Sum_probs=29.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
--+.+++|..||||||.+-+++.. ..|+++.++....+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~ 59 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT 59 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCc
Confidence 348889999999999766555442 568899998876664
No 460
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.74 E-value=0.0019 Score=57.95 Aligned_cols=44 Identities=27% Similarity=0.271 Sum_probs=32.2
Q ss_pred eEEEcccccccc-CcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
.++..++++.|. ....+... ++ +++|+|++|||||||++.|++.
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 466677777775 33334333 33 5899999999999999999875
No 461
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.72 E-value=0.0067 Score=51.27 Aligned_cols=39 Identities=31% Similarity=0.406 Sum_probs=29.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
-.+|+|.|.+||||||+++.|.+. ..+.+++++..+|+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~ 67 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG 67 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC
Confidence 457899999999999999999764 345564556667764
No 462
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.66 E-value=0.012 Score=51.88 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=31.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
+++|+|+||+|||||+..+... .++.++.+++.+...
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~ 108 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK 108 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCH
Confidence 7999999999999999988753 456889999988764
No 463
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=95.65 E-value=0.047 Score=49.46 Aligned_cols=40 Identities=20% Similarity=0.032 Sum_probs=30.5
Q ss_pred ceeEEEE-EecCCCcHHHHHHHHHcc--------CCCCeEEEEEcCCCC
Q 022736 31 SVGVTVI-TGFLGAGKSTLVNYILNG--------KHGKRIAVILNEFGE 70 (293)
Q Consensus 31 ~~pvi~i-~G~~gaGKTTlin~ll~~--------~~~~~vavv~~d~g~ 70 (293)
+..+|+| .|-.|+||||+.-.|... ..|++|.++..|+..
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~ 155 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS 155 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 3455554 588999999999888653 258999999999854
No 464
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.64 E-value=0.01 Score=48.20 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=24.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEE
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVI 64 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv 64 (293)
..++|.|++|+|||+|++.+... ..+.++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 56778999999999999999864 334444444
No 465
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.63 E-value=0.0089 Score=52.88 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=25.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d 67 (293)
++++|+|++||||||+...|.+.. ...+++.|
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l---~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL---PCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS---CEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCcEEecc
Confidence 589999999999999999998643 24555544
No 466
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.63 E-value=0.0057 Score=53.80 Aligned_cols=51 Identities=14% Similarity=0.258 Sum_probs=31.3
Q ss_pred cccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCC
Q 022736 149 SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 202 (293)
Q Consensus 149 ~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~ 202 (293)
....+|.++.|+|+.......... ..+.........+-+||+||+|+.+..
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i---~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALL---DRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHH---HHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHH---HHHHHHHHHCCCCEEEEEECCccCchh
Confidence 346899999999997433221110 002222223456779999999998753
No 467
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.60 E-value=0.0068 Score=54.63 Aligned_cols=22 Identities=50% Similarity=0.676 Sum_probs=19.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYIL 53 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll 53 (293)
.++++|+|+.||||||+++++.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999999986
No 468
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.59 E-value=0.0065 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
--+++|.|..||||||+++.|...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999865
No 469
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=95.58 E-value=0.02 Score=52.10 Aligned_cols=40 Identities=23% Similarity=0.104 Sum_probs=22.7
Q ss_pred ceeEEEE-EecCCCcHHHHHHHHHcc--------CCCCeEEEEEcCCCC
Q 022736 31 SVGVTVI-TGFLGAGKSTLVNYILNG--------KHGKRIAVILNEFGE 70 (293)
Q Consensus 31 ~~pvi~i-~G~~gaGKTTlin~ll~~--------~~~~~vavv~~d~g~ 70 (293)
+..+|+| .|-.|+||||+.-.|... ..|+++.++..|+..
T Consensus 110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~ 158 (403)
T 3ez9_A 110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA 158 (403)
T ss_dssp SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS
T ss_pred CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 3445554 589999999998887543 358999999999864
No 470
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.58 E-value=0.0083 Score=49.72 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=25.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEE
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL 65 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~ 65 (293)
+.+.++|.|++|+||||+++.+.+. ..+.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3567889999999999999999864 2244454444
No 471
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.56 E-value=0.0058 Score=51.19 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=31.0
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--C-CCCeEEEEEcCCCC
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--K-HGKRIAVILNEFGE 70 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~-~~~~vavv~~d~g~ 70 (293)
.+..+|+|.|..||||||+++.|.+. . .|.++..+..+||.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 34567889999999999999999764 2 35566654677764
No 472
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.53 E-value=0.0065 Score=52.43 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 022736 35 TVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~ 55 (293)
+++.|++|+|||||++.+...
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999999864
No 473
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.51 E-value=0.0061 Score=54.08 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
...+++.|++|+|||||++.+...
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467899999999999999999864
No 474
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.51 E-value=0.0074 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+.++|.|++|+|||++++.+.+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 345788999999999999999864
No 475
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.51 E-value=0.0063 Score=63.80 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=35.3
Q ss_pred eEEEccccccccCcc---cCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSH---ENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~---~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.++++|++++|++++ .+.+..+ -.++|+|+.|||||||++.|++.
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence 589999999997643 3333222 25999999999999999999974
No 476
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.49 E-value=0.012 Score=52.44 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=32.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
-+++|+|+||+|||||+..++.. ..+.++++++.+...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~ 86 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSA 86 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 37999999999999999988764 358899999999875
No 477
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.47 E-value=0.0075 Score=58.09 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=34.3
Q ss_pred CceEEEccccccccCcccCCC-----CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 9 PLAVRIDETTHEFSNSHENDD-----VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-----~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
..++++.++++.|++.. +.. .+--+++|+|+.|||||||++.|...
T Consensus 355 ~~~l~~~~l~~~~~~~~-l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CEEEEECCEEEECSSCE-EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEeceEEEecceE-EEecccccCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35788999988886531 221 12237999999999999999999863
No 478
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.47 E-value=0.0078 Score=53.12 Aligned_cols=41 Identities=27% Similarity=0.321 Sum_probs=29.1
Q ss_pred eEEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHH
Q 022736 11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL 53 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll 53 (293)
.+++.|+ ++|.+...+ ....++++|+|+.|||||||+.+|.
T Consensus 5 ~L~i~nf-r~~~~~~~l-~~~~g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 5 KLYLKGF-KSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEESB-TTBCSCEEE-ECCSSEEEEECCTTTCSTHHHHHHH
T ss_pred EEEEeCc-eeecCCeEE-ecCCCcEEEECCCCCcHHHHHHHHH
Confidence 4677784 566432222 2233499999999999999999996
No 479
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.43 E-value=0.0073 Score=57.32 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=34.2
Q ss_pred CceEEEccccccccCcccCCC-----CceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 9 PLAVRIDETTHEFSNSHENDD-----VSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-----~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+..++++++++.|++. .+.. .+--+++|+|+.|||||||++.|...
T Consensus 285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899998887653 1221 12247999999999999999999863
No 480
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.39 E-value=0.032 Score=47.78 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHccC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGK 56 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~ 56 (293)
.-++|.|++|+|||++++.+.+..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 348889999999999999998653
No 481
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.39 E-value=0.0089 Score=51.47 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 022736 34 VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++|+|++|||||||+..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999875
No 482
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.38 E-value=0.008 Score=50.85 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 022736 35 TVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~ 55 (293)
++|.|++|+|||||++.+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999864
No 483
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.37 E-value=0.011 Score=49.17 Aligned_cols=38 Identities=37% Similarity=0.445 Sum_probs=28.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
.+|+|.|..||||||.++.|.+. ..+.+..++..+||.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~ 43 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG 43 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCC
Confidence 47889999999999999999764 335423366677764
No 484
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.36 E-value=0.017 Score=47.38 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=24.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d 67 (293)
..++|+|++|+|||||...|.+. +. .+++.|
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~--g~--~iIsdD 65 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR--GH--RLIADD 65 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT--TC--EEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHHh--CC--eEEecc
Confidence 34889999999999999999965 22 455544
No 485
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.35 E-value=0.025 Score=49.86 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=48.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--C--CCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH-
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG--K--HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL- 107 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~--~--~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l- 107 (293)
.++.|.|++|+|||||.-.++.. . .+.+++.+..+-+. +...... -++..+.... .+++..+++
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~----~~~ra~~--lGvd~d~llv-----~~~~~~E~~~ 97 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI----TPAYLRS--MGVDPERVIH-----TPVQSLEQLR 97 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC----CHHHHHH--TTCCGGGEEE-----EECSBHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh----hHHHHHH--hCCCHHHeEE-----EcCCCHHHHH
Confidence 37899999999999998777653 2 26788888766543 1111111 1111111110 112233344
Q ss_pred HHHHHHH--HhhcCCCCEEEEecCCC
Q 022736 108 VQALEQL--VQRKERLDHILLETTGL 131 (293)
Q Consensus 108 ~~~l~~l--~~~~~~~d~iiidt~G~ 131 (293)
.+.+..+ + ....+++++||....
T Consensus 98 l~i~~~l~~i-~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 98 IDMVNQLDAI-ERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHHHHHHTC-CTTCCEEEEEECSTT
T ss_pred HHHHHHHHHh-hccCceEEEEecccc
Confidence 3333333 2 246799999998873
No 486
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.30 E-value=0.0081 Score=53.97 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
--.++|+|++|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999853
No 487
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.30 E-value=0.01 Score=48.75 Aligned_cols=40 Identities=30% Similarity=0.476 Sum_probs=27.2
Q ss_pred eEEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHH
Q 022736 11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL 53 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll 53 (293)
.+++.|+.. +...... ...++.+|+|+.||||||++.+|.
T Consensus 5 ~l~i~nf~~-~~~~~i~--f~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 5 RVTVKNFRS-HSDTVVE--FKEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEESBTT-BSSEEEE--CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCcC-ccceEEE--eCCCeEEEEcCCCCCHHHHHHHHH
Confidence 355666642 2222222 234799999999999999999985
No 488
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.29 E-value=0.0069 Score=63.34 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=35.3
Q ss_pred eEEEccccccccCc---ccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~---~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|+.+ +.+.+...- +++|+|+.|||||||++.|++.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999764 234433322 5999999999999999999874
No 489
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.29 E-value=0.017 Score=54.56 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=26.4
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEc
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILN 66 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~ 66 (293)
..+..+|+++|++||||||+.++|.+. ..+.+..+++.
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~ 71 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNV 71 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence 334558899999999999999999753 12444444443
No 490
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.26 E-value=0.035 Score=48.83 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGK 56 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~ 56 (293)
.+.++|.|++|+|||++++.+.+..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4458899999999999999997653
No 491
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.25 E-value=0.014 Score=61.13 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=36.0
Q ss_pred eEEEccccccccCc---ccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~---~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|+.+ +.+.+...- +++|+|+.|||||||++.|.+-
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999764 345544433 5999999999999999999864
No 492
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.25 E-value=0.012 Score=49.25 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=29.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGE 70 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g~ 70 (293)
+++|.|.||+|||+|+..++.+ ..+.++.+++.+...
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~ 71 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA 71 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCH
Confidence 7999999999999999887642 336778888887654
No 493
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.008 Score=55.89 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=31.7
Q ss_pred EEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++.|+++.|+.-. +.-.+-++++|+|+.|||||||++.|+.-
T Consensus 119 i~~~nl~~~y~~vs-l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 119 KYIYNLHFMLEKIR-MSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHHHHHHHHHHH-HHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred hhhhhhhehhhcCc-eEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 67778887775311 11224578999999999999999999863
No 494
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.21 E-value=0.0028 Score=58.59 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=32.8
Q ss_pred ceEEEcccccccc-CcccCCCC----ceeEEEEEecCCCcHHHHHHHHHcc
Q 022736 10 LAVRIDETTHEFS-NSHENDDV----SVGVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 10 ~~~~~~~~~~~~~-~~~~~~~~----~~pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
-.++..++++.|. ....+... +=-+++|+|++|||||||++.|.+.
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3467778877776 33333332 2236899999999999999999874
No 495
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.19 E-value=0.012 Score=49.47 Aligned_cols=36 Identities=22% Similarity=0.140 Sum_probs=26.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~ 70 (293)
..+|+|.|..||||||+++.|.+...+ ..+..+++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~---~~~~~Ep~~ 37 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE---WHVATEPVA 37 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTT---SEEECCCGG
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCC---Ceeeecchh
Confidence 347889999999999999999875433 234455553
No 496
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.16 E-value=0.0076 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 022736 34 VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~ 55 (293)
-+++.|+||+||||++.+|++.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 497
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.13 E-value=0.01 Score=56.27 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=32.4
Q ss_pred ceEEEccccccccCcccCCC----CceeEEEEEecCCCcHHHHHHHHHc
Q 022736 10 LAVRIDETTHEFSNSHENDD----VSVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~----~~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
..+++.++++.++....... .+--+++|+|+.|||||||++.|..
T Consensus 268 ~~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp EEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred ceEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46788888887765321110 1223799999999999999999986
No 498
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.12 E-value=0.0084 Score=53.19 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.0
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHc
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
..+.|-++|.|++|+||||+++.+.+
T Consensus 33 ~~~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 33 PRDLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp TTCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34455589999999999999999976
No 499
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.10 E-value=0.013 Score=49.20 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
..+|+|+|++||||||+.+.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999974
No 500
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.10 E-value=0.016 Score=53.77 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=31.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGE 70 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g~ 70 (293)
+++|+|+||+|||||+..++.. ..|.++.+++.+...
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~ 244 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA 244 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence 7999999999999999998764 247789999988764
Done!