BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022737
         (293 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ESS|A Chain A, Crystal Structure Of An Acyl-Acp Thioesterase
           (Np_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482
           At 1.90 A Resolution
          Length = 248

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 11/134 (8%)

Query: 146 GFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATG 205
           GFG    +  +N  WV+SR+ +E+D  P   E   + TWV    +    R++ +  +  G
Sbjct: 47  GFGIA-TLNEDNYTWVLSRLAIELDEXPYQYEKFSVQTWVENVYRLFTDRNFAVIDK-DG 104

Query: 206 HIFARATSTWVMMNQQTRRLSKIPAEVRAEISPWFIDKQAIIEDVPEKISKLDD------ 259
                A S W  +N  TR+ + + A     I  +  D+   IE  P +I    +      
Sbjct: 105 KKIGYARSVWAXINLNTRKPADLLALHGGSIVDYICDEPCPIEK-PSRIKVTSNQPVATL 163

Query: 260 TAKYVNSDLKVNKH 273
           TAKY  SD+ +N H
Sbjct: 164 TAKY--SDIDINGH 175


>pdb|4GAK|A Chain A, Crystal Structure Of Acyl-Acp Thioesterase From Spirosoma
           Linguale
          Length = 250

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 106 TVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRM 165
           T  +R YE       ++ ++ NL QE+A  +      +  G G    + +  + W + R 
Sbjct: 11  TFTLRGYECDAFGRXSIPALXNLXQESANRNA-----IDYGIGIA-DLAQKGVGWXLXRF 64

Query: 166 QVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATSTWVMMNQQTRRL 225
            + I  YP +G+ +++ T+     K  + RD+ + +   G + A A STW++ + + R  
Sbjct: 65  CLRIHQYPRYGDTIQLXTYPTTVDKYFIHRDFRVLA-TDGTLLADARSTWLVFSXEKRSX 123

Query: 226 SKIPAEVRAEISP 238
             +P  +R ++SP
Sbjct: 124 VPLPDFIR-QLSP 135


>pdb|2OWN|A Chain A, Crystal Structure Of Oleoyl Thioesterase (Putative)
           (Np_784467.1) From Lactobacillus Plantarum At 2.00 A
           Resolution
 pdb|2OWN|B Chain B, Crystal Structure Of Oleoyl Thioesterase (Putative)
           (Np_784467.1) From Lactobacillus Plantarum At 2.00 A
           Resolution
          Length = 262

 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 12/145 (8%)

Query: 112 YEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLI-WVVSRMQVEID 170
           YE      ATL +++++        V  S   S+  G T   ++++ + WVV++  ++I 
Sbjct: 21  YECDRTGRATLTTLIDIA-------VLASEDQSDALGLTTEXVQSHGVGWVVTQYAIDIT 73

Query: 171 HYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATSTWVMMNQQTRRLSKIPA 230
             P   EVV I     A       R++ IR  A G   A  TS WV  +Q TRR+ KI  
Sbjct: 74  RXPRQDEVVTIAVRGSAYNPYFAYREFWIRD-ADGQQLAYITSIWVXXSQTTRRIVKILP 132

Query: 231 EVRAEISPWFIDKQAIIEDVPEKIS 255
           E+   ++P+  +    I  +P  IS
Sbjct: 133 EL---VAPYQSEVVKRIPRLPRPIS 154


>pdb|2FGY|A Chain A, Beta Carbonic Anhydrase From The Carboxysomal Shell Of
           Halothiobacillus Neapolitanus (Csosca)
 pdb|2FGY|B Chain B, Beta Carbonic Anhydrase From The Carboxysomal Shell Of
           Halothiobacillus Neapolitanus (Csosca)
          Length = 542

 Score = 32.0 bits (71), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 18/81 (22%)

Query: 77  IRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATL--ESILNLFQETAL 134
           IR +IP  K F++PYR+   ++  V Y QT+      + PD+   +  E+ILN  +    
Sbjct: 330 IRVHIPDSKGFLNPYRY---VDNTVTYAQTL-----HLAPDEARVIIHEAILNANRSDG- 380

Query: 135 NHVWMSGLLSNGFGATHGMMR 155
              W  G   NG  A+ GM R
Sbjct: 381 ---WAKG---NGV-ASEGMRR 394


>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
           Maltooligosyl Trehalose Synthase
          Length = 704

 Score = 31.2 bits (69), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 27/45 (60%)

Query: 108 VVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHG 152
           ++ +Y + P K + + + L+ F E  + H+++S +L    G+THG
Sbjct: 3   LLSTYRLQPMKFSEIRNRLDYFVELGVTHLYLSPVLKARPGSTHG 47


>pdb|3QOR|C Chain C, Crystal Structure Of Human Nuclear Migration Protein Nudc
          Length = 121

 Score = 28.1 bits (61), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 231 EVRAEISPWFIDKQAIIEDVPEKISKLDDTAKYVNSDLKVN 271
           EV+ E S W I   A++    EKI+K++  ++ V+SD ++N
Sbjct: 72  EVKVEESSWLIADGAVVTVHLEKINKMEWWSRLVSSDPEIN 112


>pdb|2ZXQ|A Chain A, Crystal Structure Of Endo-Alpha-N-Acetylgalactosaminidase
           From Bifidobacterium Longum (Engbf)
          Length = 1376

 Score = 28.1 bits (61), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%)

Query: 63  VAAEKEGCRINEVQIRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEV 114
           VA+E    +  EVQI++N P+  Q+        + +G V Y Q+  VR+ E+
Sbjct: 22  VASETLKTKKMEVQIKKNFPSVLQYT-------MTDGKVMYGQSKDVRTVEI 66


>pdb|3QOR|A Chain A, Crystal Structure Of Human Nuclear Migration Protein Nudc
 pdb|3QOR|B Chain B, Crystal Structure Of Human Nuclear Migration Protein Nudc
 pdb|3QOR|D Chain D, Crystal Structure Of Human Nuclear Migration Protein Nudc
 pdb|3QOR|E Chain E, Crystal Structure Of Human Nuclear Migration Protein Nudc
          Length = 121

 Score = 28.1 bits (61), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 231 EVRAEISPWFIDKQAIIEDVPEKISKLDDTAKYVNSDLKVN 271
           EV+ E S W I   A++    EKI+K++  ++ V+SD ++N
Sbjct: 72  EVKVEESSWLIADGAVVTVHLEKINKMEWWSRLVSSDPEIN 112


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,276,298
Number of Sequences: 62578
Number of extensions: 315165
Number of successful extensions: 1154
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1141
Number of HSP's gapped (non-prelim): 19
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)