BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022738
         (293 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
           Cryptosporidium Parvum Complexed With Substrate (Pyruvic
           Acid) And Cofactor (B- Nicotinamide Adenine
           Dinucleotide)
 pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
           Cryptosporidium Parvum Complexed With Substrate (Pyruvic
           Acid) And Cofactor (B- Nicotinamide Adenine
           Dinucleotide)
 pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
           Cryptosporidium Parvum Complexed With Substrate (Lactic
           Acid) And Cofactor (B- Nicotinamide Adenine
           Dinucleotide)
 pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
           Cryptosporidium Parvum Complexed With Substrate (Lactic
           Acid) And Cofactor (B- Nicotinamide Adenine
           Dinucleotide)
 pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
           Cryptosporidium Parvum Complexed With Cofactor
           (B-Nicotinamide Adenine Dinucleotide) And Inhibitor
           (Oxamic Acid)
 pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
           Cryptosporidium Parvum Complexed With Cofactor
           (B-Nicotinamide Adenine Dinucleotide) And Inhibitor
           (Oxamic Acid)
 pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
           Cryptosporidium Parvum
 pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
           Cryptosporidium Parvum
 pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
           Cryptosporidium Parvum
 pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
           Cryptosporidium Parvum
          Length = 321

 Score = 27.3 bits (59), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 13/17 (76%), Positives = 13/17 (76%)

Query: 89  TGPLDVMVSGFDDVSGL 105
           T PLDVMVS F  VSGL
Sbjct: 121 TNPLDVMVSHFQKVSGL 137


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.142    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,613,941
Number of Sequences: 62578
Number of extensions: 257307
Number of successful extensions: 620
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 2
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)