BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022738
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93XY5|TET18_ARATH Tetraspanin-18 OS=Arabidopsis thaliana GN=At2g20230 PE=2 SV=1
Length = 270
Score = 276 bits (705), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 161/282 (57%), Positives = 196/282 (69%), Gaps = 29/282 (10%)
Query: 1 MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVS 60
M+RNCCH+SFA LK LNF+Q FIGVSII+YSIWML +++ H+PV P P + + T ++
Sbjct: 1 MRRNCCHVSFASTLKILNFVQAFIGVSIIIYSIWMLHEYSRHLPVDPPPSASSSSGTEIA 60
Query: 61 SSSLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSG--LGFDFNSFELPAPW 118
+S N P+D + S +G GF+ S +LPAPW
Sbjct: 61 TSVSEPLKN---------------------PIDFVASIILGSNGGDHGFNLRSLDLPAPW 99
Query: 119 FIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEK 178
FIYSFM VGILVC + IG IAAEAI+GCCLCFY+ILK +L LLEAALVA+IAIDR WEK
Sbjct: 100 FIYSFMAVGILVCIVTFIGFIAAEAINGCCLCFYSILKTLLILLEAALVAYIAIDRHWEK 159
Query: 179 DLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEED 238
DLP+DPTGEL SLR+FIE+N+DICKWVGI VV VQ LSLLLA++LRAMVST + DEE+
Sbjct: 160 DLPYDPTGELSSLRAFIEENIDICKWVGIAVVAVQLLSLLLAMVLRAMVSTPKPELDEEE 219
Query: 239 DYESERIRIREPLI----HQQPIAHSDI--WSSRIREKYGLN 274
D E+ R R +PL+ +Q P S I WSSRIREKYGLN
Sbjct: 220 DDENPRSRTWDPLLGPQGNQAPAGSSKIENWSSRIREKYGLN 261
>sp|Q9SVU4|TET20_ARATH Tetraspanin-20 OS=Arabidopsis thaliana GN=At4g28770 PE=2 SV=1
Length = 281
Score = 255 bits (651), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 163/282 (57%), Positives = 198/282 (70%), Gaps = 20/282 (7%)
Query: 1 MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVS 60
M+ NCCH+SFA ILK LNFLQ FIG+SII+YSIWMLDQ+NHHVPV P P P + S
Sbjct: 1 MRHNCCHVSFASILKILNFLQAFIGISIIIYSIWMLDQYNHHVPVDPPPSQPPAASSPDS 60
Query: 61 SSSLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSG---LGFDFNSFELPAP 117
S S S + + S L + P+D VSG SG GF+ S +LPAP
Sbjct: 61 SYSFSNSIIEINSVSDSLKN----------PID-FVSGIVLGSGGGDSGFNLRSLDLPAP 109
Query: 118 WFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWE 177
WFIY FM +GILVC + +IG IAAEAI+GCCLCFY+ILK +L ++EAALV FI IDR WE
Sbjct: 110 WFIYCFMAIGILVCIVTIIGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHWE 169
Query: 178 KDLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEE 237
KDLP+DPTGEL+SLR+FIE+N+DICKWVGI VV +Q LSLLLA++LRAMVS R++ D+E
Sbjct: 170 KDLPYDPTGELNSLRAFIEENIDICKWVGIVVVAIQLLSLLLALVLRAMVSPRQSELDDE 229
Query: 238 DDYESERIRIREPLIHQQPIAHS------DIWSSRIREKYGL 273
DD+E+ R R+ L+ Q S D W SRIREKYGL
Sbjct: 230 DDFENPMSRARDNLLGPQANQTSSGSSNIDNWRSRIREKYGL 271
>sp|Q940P5|TET19_ARATH Tetraspanin-19 OS=Arabidopsis thaliana GN=At2g20740 PE=2 SV=1
Length = 221
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 101/169 (59%), Gaps = 8/169 (4%)
Query: 109 FNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVA 168
F + P PWFIYSF+G+G ++C + G IAAE ++GCCL Y ++L ++E +VA
Sbjct: 47 FADSDHPVPWFIYSFLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVA 106
Query: 169 FIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVS 228
I ++R W+KD P DP+G FIE N ICKW+G+++V VQ LS+L+A++L+A+
Sbjct: 107 DIFLNRDWKKDFPEDPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLKALGP 166
Query: 229 TRRTNFDEEDDYESERIRIRE------PLIHQQPI--AHSDIWSSRIRE 269
++D +D+Y + + + P + +P+ A W+ R+ +
Sbjct: 167 HPHRHYDSDDEYNVSTVALLQDARQPPPYVVGEPMYGAKPGAWTVRLMK 215
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 13 ILKFLNFLQGFIGVSIILYSIWMLDQWNHHV 43
+LK +N L G +G+++ILY++W++ QW +
Sbjct: 12 MLKLVNSLIGMVGIAMILYAVWLIRQWQEQM 42
>sp|A0M5T1|SYL_GRAFK Leucine--tRNA ligase OS=Gramella forsetii (strain KT0803) GN=leuS
PE=3 SV=1
Length = 962
Score = 33.1 bits (74), Expect = 2.7, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 49 PPLAPTPDTSVSSSSLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSGLGFD 108
PPL D + S + + N QSR LS H ++ P V G DD +
Sbjct: 522 PPLGNATDWAWDSKNNKVVSNKVLKQSRKLSGQHDEPNSNVTP--SAVEGSDDNGIYPLE 579
Query: 109 FNSFELP----APWFIYSFMGVG 127
N+ +P + W+++ +MG G
Sbjct: 580 LNT--MPGWAGSSWYLFRYMGAG 600
>sp|P27701|CD82_HUMAN CD82 antigen OS=Homo sapiens GN=CD82 PE=1 SV=1
Length = 267
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 30/46 (65%)
Query: 178 KDLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIIL 223
+D P G ++ +++++++N+ I VG+ V I++ L ++L+I L
Sbjct: 207 EDWPVYQEGCMEKVQAWLQENLGIILGVGVGVAIIELLGMVLSICL 252
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.141 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,091,799
Number of Sequences: 539616
Number of extensions: 4426831
Number of successful extensions: 18635
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 18592
Number of HSP's gapped (non-prelim): 53
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)