Query 022738
Match_columns 293
No_of_seqs 211 out of 1285
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:47:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 99.9 1.4E-23 3E-28 190.1 15.2 163 3-231 2-232 (237)
2 PF00335 Tetraspannin: Tetrasp 99.6 8.3E-17 1.8E-21 138.9 -0.4 152 9-226 1-220 (221)
3 KOG4433 Tweety transmembrane/c 94.2 0.48 1E-05 47.9 10.8 36 127-162 217-252 (526)
4 PF04906 Tweety: Tweety; Inte 90.6 0.79 1.7E-05 45.5 7.2 34 128-161 194-227 (406)
5 cd03164 CD53_like_LEL Tetraspa 90.3 0.19 4.2E-06 38.1 2.0 30 174-203 48-86 (86)
6 PF07086 DUF1352: Protein of u 79.8 13 0.00027 33.5 8.5 43 130-172 81-123 (186)
7 PF04103 CD20: CD20-like famil 76.6 0.95 2.1E-05 37.4 0.4 39 126-164 37-75 (150)
8 PF15345 TMEM51: Transmembrane 75.6 6.1 0.00013 36.6 5.4 27 121-147 62-88 (233)
9 PRK10263 DNA translocase FtsK; 64.9 1.1E+02 0.0024 35.3 13.0 16 120-135 75-90 (1355)
10 cd03158 penumbra_like_LEL Tetr 62.5 5.1 0.00011 32.2 1.8 18 182-199 102-119 (119)
11 TIGR01571 A_thal_Cys_rich unch 62.5 5.2 0.00011 32.1 1.9 16 262-277 65-80 (104)
12 PF05640 NKAIN: Na,K-Atpase In 62.5 24 0.00051 32.1 6.2 47 122-168 35-81 (200)
13 PF04749 PLAC8: PLAC8 family; 60.2 6 0.00013 30.9 1.8 17 261-277 68-84 (106)
14 cd03166 CD63_LEL Tetraspanin, 60.0 4.6 9.9E-05 31.2 1.1 18 182-199 82-99 (99)
15 cd03163 TM4SF8_like_LEL Tetras 59.7 5.1 0.00011 31.2 1.3 18 182-199 87-104 (105)
16 cd03154 TM4SF3_like_LEL Tetras 59.7 6.5 0.00014 30.3 1.9 18 182-199 83-100 (100)
17 PF10177 DUF2371: Uncharacteri 59.6 15 0.00032 31.6 4.2 27 10-36 38-64 (141)
18 cd03161 TM4SF2_6_like_LEL Tetr 59.0 6 0.00013 30.6 1.6 18 182-199 87-104 (104)
19 cd03167 oculospanin_like_LEL T 57.9 6.4 0.00014 31.9 1.7 18 182-199 103-120 (120)
20 cd07912 Tweety_N N-terminal do 57.6 29 0.00062 34.9 6.5 39 125-163 214-252 (418)
21 cd03160 CD37_CD82_like_LEL Tet 56.7 4.6 0.0001 32.2 0.6 18 182-199 99-116 (117)
22 PRK12585 putative monovalent c 56.5 88 0.0019 28.4 8.7 28 14-41 5-32 (197)
23 KOG3357 Uncharacterized conser 55.8 8.5 0.00018 32.8 2.1 26 247-272 11-37 (167)
24 PF13903 Claudin_2: PMP-22/EMP 54.9 67 0.0015 26.5 7.5 30 122-151 73-103 (172)
25 cd03165 NET-5_like_LEL Tetrasp 54.9 5.8 0.00013 30.4 0.9 18 182-199 81-98 (98)
26 cd03159 TM4SF9_like_LEL Tetras 54.5 6.7 0.00014 31.6 1.2 18 182-199 104-121 (121)
27 cd03156 uroplakin_I_like_LEL T 51.1 8.9 0.00019 29.9 1.4 18 182-199 97-114 (114)
28 PF08694 UFC1: Ubiquitin-fold 49.6 11 0.00025 32.5 1.9 25 248-272 9-34 (161)
29 cd03152 CD9_LEL Tetraspanin, e 48.0 11 0.00024 28.3 1.5 18 182-199 67-84 (84)
30 cd03127 tetraspanin_LEL Tetras 47.2 11 0.00024 27.8 1.3 18 182-199 73-90 (90)
31 cd03155 CD151_like_LEL Tetrasp 45.7 15 0.00033 28.7 2.0 18 182-199 91-110 (110)
32 PF05915 DUF872: Eukaryotic pr 44.3 57 0.0012 26.9 5.3 24 15-38 44-67 (115)
33 PF06724 DUF1206: Domain of Un 43.9 25 0.00054 26.1 2.8 21 18-38 47-67 (73)
34 PF01601 Corona_S2: Coronaviru 42.7 8.2 0.00018 40.3 0.0 28 115-142 545-581 (610)
35 cd03162 peripherin_like_LEL Te 41.9 13 0.00029 31.8 1.2 25 175-199 119-143 (143)
36 PF05835 Synaphin: Synaphin pr 40.5 15 0.00031 31.6 1.2 18 261-278 62-79 (139)
37 PF10176 DUF2370: Protein of u 38.4 32 0.00069 32.0 3.2 33 114-146 191-223 (233)
38 PF15050 SCIMP: SCIMP protein 37.7 64 0.0014 27.2 4.5 33 193-226 2-34 (133)
39 PF05478 Prominin: Prominin; 36.0 17 0.00037 39.2 1.2 24 149-172 139-162 (806)
40 PF01988 VIT1: VIT family; In 35.3 58 0.0013 29.2 4.3 22 258-279 108-129 (213)
41 KOG3950 Gamma/delta sarcoglyca 35.0 36 0.00079 32.0 2.9 27 146-172 34-60 (292)
42 PF12273 RCR: Chitin synthesis 31.8 39 0.00084 28.0 2.4 23 203-225 1-23 (130)
43 cd02432 Nodulin-21_like_1 Nodu 30.6 81 0.0018 28.7 4.5 21 259-279 114-134 (218)
44 PF04156 IncA: IncA protein; 30.3 79 0.0017 27.4 4.2 22 15-36 5-26 (191)
45 cd02434 Nodulin-21_like_3 Nodu 29.9 67 0.0015 29.3 3.8 21 257-277 108-129 (225)
46 PRK07375 putative monovalent c 29.7 3.1E+02 0.0066 22.3 8.5 17 124-140 6-22 (112)
47 cd03157 TM4SF12_like_LEL Tetra 29.1 36 0.00078 27.2 1.7 17 182-198 86-102 (103)
48 KOG1314 DHHC-type Zn-finger pr 29.0 3.3E+02 0.0073 27.1 8.5 64 204-272 192-261 (414)
49 KOG1362 Choline transporter-li 28.1 6.9E+02 0.015 26.3 11.2 44 184-227 209-252 (577)
50 PRK11901 hypothetical protein; 27.7 53 0.0011 32.0 2.8 23 121-143 37-59 (327)
51 PF13706 PepSY_TM_3: PepSY-ass 24.2 1.1E+02 0.0023 20.0 3.0 22 122-143 11-32 (37)
52 PF04156 IncA: IncA protein; 23.9 2.3E+02 0.005 24.5 6.0 21 122-142 10-30 (191)
53 PF07423 DUF1510: Protein of u 23.8 71 0.0015 29.4 2.8 26 13-38 12-37 (217)
54 PF13908 Shisa: Wnt and FGF in 23.8 38 0.00082 29.5 1.0 22 122-143 78-99 (179)
55 PF04790 Sarcoglycan_1: Sarcog 23.5 73 0.0016 30.0 2.9 32 141-172 6-37 (264)
56 PF09323 DUF1980: Domain of un 22.8 3.9E+02 0.0084 23.2 7.2 45 117-161 29-86 (182)
57 PF13314 DUF4083: Domain of un 21.9 2.2E+02 0.0047 20.9 4.4 33 209-241 13-45 (58)
58 PRK12585 putative monovalent c 21.5 92 0.002 28.3 3.0 22 118-139 7-28 (197)
59 PF06341 DUF1056: Protein of u 20.9 2.1E+02 0.0046 21.3 4.3 30 8-37 5-34 (63)
60 PF10724 DUF2516: Protein of u 20.1 4.5E+02 0.0098 21.2 6.4 31 11-41 2-32 (100)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=99.91 E-value=1.4e-23 Score=190.12 Aligned_cols=163 Identities=26% Similarity=0.442 Sum_probs=136.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCCCCCCCCCCCCCCCcccccccccccccccccccccc
Q 022738 3 RNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVSSSSLSLFLNSDTTQSRVLSHDH 82 (293)
Q Consensus 3 ~~~C~~~lk~lL~~lN~l~~l~Gl~lI~~giwml~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (293)
.++|..|+|++++++|+++|++|++++++|+|++.+...... +
T Consensus 2 ~~~~~~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~-------------------------------------~ 44 (237)
T KOG3882|consen 2 MSCGSSCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSS-------------------------------------L 44 (237)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhh-------------------------------------c
Confidence 678999999999999999999999999999999887665211 0
Q ss_pred ccccccCCCcccccccccCCCCCCcccCCCCCCcchhhhHHHhhhHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 022738 83 RRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLL 162 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~wfIY~~i~vG~i~~iis~~GcigA~~~n~c~L~~Y~vll~lLill 162 (293)
. . . . .+..+| +++++|+++++++++||+||.+||+|+|.+|++++++++++
T Consensus 45 ~-----~-------------------~-~-~~~~~~---ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~~l~l~~i~ 95 (237)
T KOG3882|consen 45 L-----E-------------------S-D-FLVPAY---ILIAVGGVVFLVGFLGCCGALRESRCLLLSYFILLLLLFIA 95 (237)
T ss_pred c-----c-------------------c-c-hhcchh---hhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHHHHHHHHHH
Confidence 0 0 0 0 122334 89999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc-----------------------c----------------------CCCCCC----CC------------
Q 022738 163 EAALVAFIAI-----------------------D----------------------RRWEKD----LP------------ 181 (293)
Q Consensus 163 Eia~~a~i~~-----------------------n----------------------~dW~~~----iP------------ 181 (293)
|++++++.+. | .||.+. +|
T Consensus 96 e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~d~~Q~~~~CCG~~~~~~~~~~~~~~vP~SCC~~~~~~~~ 175 (237)
T KOG3882|consen 96 ELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDPDLGEAWDKLQRELKCCGVNGYSDYFNCSSNNVPPSCCKRTRRQKF 175 (237)
T ss_pred HHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhccCCcCCCchHHhcCCCCCCCcccCCCcccccc
Confidence 9999966552 0 123211 55
Q ss_pred -------CCCCCchHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 022738 182 -------FDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRR 231 (293)
Q Consensus 182 -------~y~tGC~~~l~~~l~~n~~ii~~v~l~v~iiQilgillA~~L~~~i~~~~ 231 (293)
.|++||.+++.+|+++|+.++++++++++++|++++++|++|...+++++
T Consensus 176 ~~~~~~~~~~~GC~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~a~~l~~~i~~~~ 232 (237)
T KOG3882|consen 176 PQDVPDNIYTEGCLEKLSSWLESNLLIIGGVGLGIAVLELLGMILACCLANAIRNQR 232 (237)
T ss_pred cccchhhhhccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48899999999999999999999999999999999999999998876544
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.60 E-value=8.3e-17 Score=138.86 Aligned_cols=152 Identities=28% Similarity=0.462 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCCCCCCCCCCCCCCCcccccccccccccccccccccccccccc
Q 022738 9 SFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVSSSSLSLFLNSDTTQSRVLSHDHRRLTTS 88 (293)
Q Consensus 9 ~lk~lL~~lN~l~~l~Gl~lI~~giwml~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (293)
|+|+++.++|+++++.|++++++|+|+...... .. . ..
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~-~~---~--------------------------------~~------ 38 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQY-LS---E--------------------------------FS------ 38 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cc---c--------------------------------cc------
Confidence 689999999999999999999999999421111 10 0 00
Q ss_pred CCCcccccccccCCCCCCcccCCCCCCcchhhhHHHhhhHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 022738 89 TGPLDVMVSGFDDVSGLGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVA 168 (293)
Q Consensus 89 ~~~~~~~~~~~~g~~~~~~~~~~~~l~~~wfIY~~i~vG~i~~iis~~GcigA~~~n~c~L~~Y~vll~lLillEia~~a 168 (293)
....... +++++.+|+++++++++||+|+.++|+|+|..|.+++++++++|++++.
T Consensus 39 ---------------------~~~~~~~---~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~~~~~~~v~~~~~~i 94 (221)
T PF00335_consen 39 ---------------------SSFISYV---IIILIFIGIFILIISFLGCIGACRKNRCLLIIYIILLILLFVLELVVGI 94 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------ccchhHH---HHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccchhhHHHHHHHHHH
Confidence 0000111 2367779999999999999999999999999999999999999999985
Q ss_pred hhcc--c-------------------------------------------CCCCCC-----------------------C
Q 022738 169 FIAI--D-------------------------------------------RRWEKD-----------------------L 180 (293)
Q Consensus 169 ~i~~--n-------------------------------------------~dW~~~-----------------------i 180 (293)
+.+. + +||.+. -
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iq~~~~CCG~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (221)
T PF00335_consen 95 VAFSYRDQLNSSLKDGLSLRCMKSYNSNESFSEAWDNIQEKFECCGVNSPDDWFTSKWSSCSSPDSCPDCQCPDDCSSEN 174 (221)
T ss_dssp -----HHHHHHHHHHHHHHHHHHSSTT-CHHHHHHHHHHHHHT--SSTTCHHHHHHHHHT---------TCS-TTCCCCH
T ss_pred hhhhccccccccccccccchhhhccccccchhhheecccccccccCCCCCcccccccccccccccccccccccccccccc
Confidence 4433 0 112100 1
Q ss_pred CCCCCCchHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022738 181 PFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAM 226 (293)
Q Consensus 181 P~y~tGC~~~l~~~l~~n~~ii~~v~l~v~iiQilgillA~~L~~~ 226 (293)
+.+.+||.+++.++++++...+.+++++++++|++++++|++|.+.
T Consensus 175 ~~~~~gC~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~l~~~ 220 (221)
T PF00335_consen 175 SIYTRGCYDKLREYLRSYLKYIGIVSLAILVLQLIGIILACCLCRH 220 (221)
T ss_dssp CCTST-HHHHHHHHHCT-----------------------------
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1689999999999999999999999999999999999999998753
No 3
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=94.15 E-value=0.48 Score=47.93 Aligned_cols=36 Identities=14% Similarity=0.341 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 022738 127 GILVCCIALIGCIAAEAISGCCLCFYAILKIILFLL 162 (293)
Q Consensus 127 G~i~~iis~~GcigA~~~n~c~L~~Y~vll~lLill 162 (293)
=++.+++.+++++|-+|+|||.|.+|++.=++.+++
T Consensus 217 L~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvi 252 (526)
T KOG4433|consen 217 LTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVI 252 (526)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 357788888999999999999999998765555544
No 4
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=90.65 E-value=0.79 Score=45.53 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 022738 128 ILVCCIALIGCIAAEAISGCCLCFYAILKIILFL 161 (293)
Q Consensus 128 ~i~~iis~~GcigA~~~n~c~L~~Y~vll~lLil 161 (293)
++.+++.++|++|..+++||.+..++++-++.++
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~gll~lv 227 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVLGLLALV 227 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeeccHHHHH
Confidence 4666777888899999999999876665444333
No 5
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=90.26 E-value=0.19 Score=38.14 Aligned_cols=30 Identities=20% Similarity=0.493 Sum_probs=24.0
Q ss_pred CCCCCCCC---------CCCCCchHHHHHHHHhhchhHH
Q 022738 174 RRWEKDLP---------FDPTGELDSLRSFIEDNVDICK 203 (293)
Q Consensus 174 ~dW~~~iP---------~y~tGC~~~l~~~l~~n~~ii~ 203 (293)
+||.+.+| .|++||.+++.+|+++|+.+++
T Consensus 48 ~Dw~~~vP~SCC~~~~~~~~~GC~~~~~~~~~~~~~iig 86 (86)
T cd03164 48 TDWGSGVPSSCCSSDTEYKVEGCYKKLKNWFESNFLYTG 86 (86)
T ss_pred hhhCCCCChhhcCCCCccccccHHHHHHHHHHHHHHHhC
Confidence 56655555 5889999999999999988753
No 6
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=79.79 E-value=13 Score=33.45 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhcc
Q 022738 130 VCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAI 172 (293)
Q Consensus 130 ~~iis~~GcigA~~~n~c~L~~Y~vll~lLillEia~~a~i~~ 172 (293)
-++.+++|-.|-.+.|.-.|..|++-.+++-++=+..++...+
T Consensus 81 S~ip~~~G~~s~~rN~i~~l~~y~~~~~~~gl~pl~~g~~~~~ 123 (186)
T PF07086_consen 81 SLIPSLLGLLSLRRNNISLLRLYMIGSSLFGLLPLIYGAMYYF 123 (186)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777778888888887776665555555544333
No 7
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=76.58 E-value=0.95 Score=37.38 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 022738 126 VGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEA 164 (293)
Q Consensus 126 vG~i~~iis~~GcigA~~~n~c~L~~Y~vll~lLillEi 164 (293)
.|+..++.|.+|..+..+.++|++..+.++-++-++.-+
T Consensus 37 ~G~~fiisG~l~i~s~k~~~~~lv~~~l~lsi~s~~~a~ 75 (150)
T PF04103_consen 37 GGIFFIISGILGIASEKKPTKCLVIASLVLSIVSALLAL 75 (150)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHH
Confidence 488888899999888888889999888877666555433
No 8
>PF15345 TMEM51: Transmembrane protein 51
Probab=75.57 E-value=6.1 Score=36.59 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=20.4
Q ss_pred hHHHhhhHHHHHHHHHHHHHHhhcccc
Q 022738 121 YSFMGVGILVCCIALIGCIAAEAISGC 147 (293)
Q Consensus 121 Y~~i~vG~i~~iis~~GcigA~~~n~c 147 (293)
|+++|+|++++++++|=++=-.++++-
T Consensus 62 yVLVG~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 62 YVLVGSGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred EehhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 699999999999999655555555443
No 9
>PRK10263 DNA translocase FtsK; Provisional
Probab=64.95 E-value=1.1e+02 Score=35.31 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=9.7
Q ss_pred hhHHHhhhHHHHHHHH
Q 022738 120 IYSFMGVGILVCCIAL 135 (293)
Q Consensus 120 IY~~i~vG~i~~iis~ 135 (293)
.+.++|++.+++.+-+
T Consensus 75 L~~LFGl~AYLLP~LL 90 (1355)
T PRK10263 75 LFFIFGVMAYTIPVII 90 (1355)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 3456777777665533
No 10
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=62.54 E-value=5.1 Score=32.22 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=16.5
Q ss_pred CCCCCchHHHHHHHHhhc
Q 022738 182 FDPTGELDSLRSFIEDNV 199 (293)
Q Consensus 182 ~y~tGC~~~l~~~l~~n~ 199 (293)
+|++||++++.+|+++|+
T Consensus 102 i~~~GC~~~i~~~~~~n~ 119 (119)
T cd03158 102 IYTRGCIDAVVLWIEDNL 119 (119)
T ss_pred ccccchHHHHHHHHHhhC
Confidence 789999999999999984
No 11
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=62.49 E-value=5.2 Score=32.13 Aligned_cols=16 Identities=38% Similarity=0.783 Sum_probs=13.1
Q ss_pred hHHHHHHHhhCCCCCC
Q 022738 262 IWSSRIREKYGLNGGG 277 (293)
Q Consensus 262 ~ws~rmrekygl~~~~ 277 (293)
..+++||+|||+..|.
T Consensus 65 ~~R~~~R~ry~i~gs~ 80 (104)
T TIGR01571 65 FIRIKLREKYGIQGAP 80 (104)
T ss_pred HHHHHHHHHhCCCCCC
Confidence 4478999999998754
No 12
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=62.47 E-value=24 Score=32.09 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=32.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 022738 122 SFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVA 168 (293)
Q Consensus 122 ~~i~vG~i~~iis~~GcigA~~~n~c~L~~Y~vll~lLillEia~~a 168 (293)
.-|.+-.+-.++-++|..||..-++..+..|.+-..+-+..-+-+..
T Consensus 35 aPIl~NF~hIi~vIlGlFG~~QyR~ryi~~Y~vW~~~Wv~wNvfiic 81 (200)
T PF05640_consen 35 APILANFLHIIFVILGLFGAIQYRPRYIIVYAVWTALWVTWNVFIIC 81 (200)
T ss_pred HHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHhHHHHH
Confidence 33444445555567788899999999999999877665555444443
No 13
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=60.16 E-value=6 Score=30.89 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=13.7
Q ss_pred hhHHHHHHHhhCCCCCC
Q 022738 261 DIWSSRIREKYGLNGGG 277 (293)
Q Consensus 261 d~ws~rmrekygl~~~~ 277 (293)
-..|.++|||||++.+.
T Consensus 68 ~~~R~~iR~ry~I~g~~ 84 (106)
T PF04749_consen 68 CSLRQQIRERYGIQGSC 84 (106)
T ss_pred hhHHHHHHHHhCCCCCC
Confidence 55688999999998753
No 14
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=60.01 E-value=4.6 Score=31.16 Aligned_cols=18 Identities=11% Similarity=0.429 Sum_probs=16.2
Q ss_pred CCCCCchHHHHHHHHhhc
Q 022738 182 FDPTGELDSLRSFIEDNV 199 (293)
Q Consensus 182 ~y~tGC~~~l~~~l~~n~ 199 (293)
.|.+||++++.+|+++|+
T Consensus 82 ~y~~GC~~~~~~~~~~~~ 99 (99)
T cd03166 82 IHLEGCVTKIEGWLKKNI 99 (99)
T ss_pred hHHhcCHHHHHHHHHHhC
Confidence 688899999999999874
No 15
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=59.69 E-value=5.1 Score=31.22 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=16.5
Q ss_pred CCCCCchHHHHHHHHhhc
Q 022738 182 FDPTGELDSLRSFIEDNV 199 (293)
Q Consensus 182 ~y~tGC~~~l~~~l~~n~ 199 (293)
+|++||++++.+|+++|+
T Consensus 87 i~~~GC~~~~~~~~~~~~ 104 (105)
T cd03163 87 LYQEGCEAKLVKKLQEVM 104 (105)
T ss_pred hhhhccHHHHHHHHHHHh
Confidence 588999999999999986
No 16
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=59.66 E-value=6.5 Score=30.34 Aligned_cols=18 Identities=11% Similarity=0.344 Sum_probs=16.2
Q ss_pred CCCCCchHHHHHHHHhhc
Q 022738 182 FDPTGELDSLRSFIEDNV 199 (293)
Q Consensus 182 ~y~tGC~~~l~~~l~~n~ 199 (293)
.|++||.+++.+|+++|+
T Consensus 83 ~~~~GC~~~i~~~~~~~~ 100 (100)
T cd03154 83 VYKEPCISKIKDFLKKNL 100 (100)
T ss_pred ccccccHHHHHHHHHhhC
Confidence 588999999999999874
No 17
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=59.62 E-value=15 Score=31.64 Aligned_cols=27 Identities=15% Similarity=0.360 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022738 10 FAFILKFLNFLQGFIGVSIILYSIWML 36 (293)
Q Consensus 10 lk~lL~~lN~l~~l~Gl~lI~~giwml 36 (293)
..++..++-+++.++|++|-.+|-|--
T Consensus 38 ~Sg~~l~lG~lvllvGiaMAv~GYwp~ 64 (141)
T PF10177_consen 38 PSGLFLLLGILVLLVGIAMAVLGYWPK 64 (141)
T ss_pred HHHHHHHHHHHHHHHhhHhheeecccc
Confidence 344556667777888888877777754
No 18
>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.
Probab=58.99 E-value=6 Score=30.57 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=16.2
Q ss_pred CCCCCchHHHHHHHHhhc
Q 022738 182 FDPTGELDSLRSFIEDNV 199 (293)
Q Consensus 182 ~y~tGC~~~l~~~l~~n~ 199 (293)
+|++||.+++.+|+++|+
T Consensus 87 i~~~GC~~~~~~~~~~n~ 104 (104)
T cd03161 87 VYQQGCFTLVTSFMEANM 104 (104)
T ss_pred cchhccHHHHHHHHHHhC
Confidence 588999999999999874
No 19
>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.
Probab=57.92 E-value=6.4 Score=31.92 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=16.4
Q ss_pred CCCCCchHHHHHHHHhhc
Q 022738 182 FDPTGELDSLRSFIEDNV 199 (293)
Q Consensus 182 ~y~tGC~~~l~~~l~~n~ 199 (293)
+|++||++++.+|+++|+
T Consensus 103 iy~~GC~~~l~~~~~~n~ 120 (120)
T cd03167 103 VHLGGCGPPLRRWLRGNL 120 (120)
T ss_pred chhccCHHHHHHHHHhcC
Confidence 689999999999999874
No 20
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=57.58 E-value=29 Score=34.90 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Q 022738 125 GVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLE 163 (293)
Q Consensus 125 ~vG~i~~iis~~GcigA~~~n~c~L~~Y~vll~lLillE 163 (293)
++=++.+++.+++|+|..+.+||.+.+++++-++.+++-
T Consensus 214 ~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~l~l~~~ 252 (418)
T cd07912 214 GLLSLLLVICLVLLVGLARHSRCLLIVFSVCGLFALIIS 252 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 333466667777889999999999999877655554443
No 21
>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos
Probab=56.71 E-value=4.6 Score=32.17 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=16.5
Q ss_pred CCCCCchHHHHHHHHhhc
Q 022738 182 FDPTGELDSLRSFIEDNV 199 (293)
Q Consensus 182 ~y~tGC~~~l~~~l~~n~ 199 (293)
+|++||++++.+|+++|+
T Consensus 99 iy~~GC~~~l~~~~~~n~ 116 (117)
T cd03160 99 VYQEGCMEKLQSWLNENL 116 (117)
T ss_pred hHHHhhHHHHHHHHHHhc
Confidence 588999999999999986
No 22
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=56.46 E-value=88 Score=28.38 Aligned_cols=28 Identities=7% Similarity=0.048 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 022738 14 LKFLNFLQGFIGVSIILYSIWMLDQWNH 41 (293)
Q Consensus 14 L~~lN~l~~l~Gl~lI~~giwml~~~~~ 41 (293)
+-.+-.++.++|+.++.+|..-+.....
T Consensus 5 ~eiI~~vLLliG~~f~ligaIGLlRfPD 32 (197)
T PRK12585 5 IEIIISIMILIGGLLSILAAIGVIRLPD 32 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3455566777788888777766655443
No 23
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.80 E-value=8.5 Score=32.80 Aligned_cols=26 Identities=31% Similarity=0.726 Sum_probs=23.1
Q ss_pred ccCcCCcCCCCCCc-hhHHHHHHHhhC
Q 022738 247 IREPLIHQQPIAHS-DIWSSRIREKYG 272 (293)
Q Consensus 247 ~r~pll~~~~~~~~-d~ws~rmrekyg 272 (293)
.|-||+.+.+|+|. |.|-+|+.|.|-
T Consensus 11 ~~ipll~tkagprd~~~wvqrlkeey~ 37 (167)
T KOG3357|consen 11 SRIPLLKTKAGPRDGDLWVQRLKEEYQ 37 (167)
T ss_pred hhCcceeccCCCccchHHHHHHHHHHH
Confidence 57899999998887 999999999984
No 24
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=54.90 E-value=67 Score=26.50 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHhhhHHHHHHHHH-HHHHHhhcccchhHH
Q 022738 122 SFMGVGILVCCIALI-GCIAAEAISGCCLCF 151 (293)
Q Consensus 122 ~~i~vG~i~~iis~~-GcigA~~~n~c~L~~ 151 (293)
.++.+|+++.+++++ +.++.+++++.+...
T Consensus 73 ~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (172)
T PF13903_consen 73 AFLILGLLLLLFAFVFALIGFCKRSYTLYLF 103 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 566677777666665 677777766644443
No 25
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=54.89 E-value=5.8 Score=30.37 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=16.1
Q ss_pred CCCCCchHHHHHHHHhhc
Q 022738 182 FDPTGELDSLRSFIEDNV 199 (293)
Q Consensus 182 ~y~tGC~~~l~~~l~~n~ 199 (293)
.|.+||++++.+|+++|+
T Consensus 81 ~~~~GC~~~~~~~~~~~~ 98 (98)
T cd03165 81 WWKTGCYEKVQQWLVDNL 98 (98)
T ss_pred hHHhhhHHHHHHHHHhcC
Confidence 588999999999999874
No 26
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=54.46 E-value=6.7 Score=31.63 Aligned_cols=18 Identities=17% Similarity=0.554 Sum_probs=16.3
Q ss_pred CCCCCchHHHHHHHHhhc
Q 022738 182 FDPTGELDSLRSFIEDNV 199 (293)
Q Consensus 182 ~y~tGC~~~l~~~l~~n~ 199 (293)
+|.+||.+++.+|+++|+
T Consensus 104 i~~~GC~~~l~~~~~~n~ 121 (121)
T cd03159 104 IHTKGCVQAFEKWLQDNL 121 (121)
T ss_pred chHhhCHHHHHHHHHhcC
Confidence 688999999999999874
No 27
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=51.13 E-value=8.9 Score=29.91 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=16.1
Q ss_pred CCCCCchHHHHHHHHhhc
Q 022738 182 FDPTGELDSLRSFIEDNV 199 (293)
Q Consensus 182 ~y~tGC~~~l~~~l~~n~ 199 (293)
+|++||++++.+|+++|.
T Consensus 97 ~~~~GC~~~l~~~~~~~~ 114 (114)
T cd03156 97 YNKKGCYEKLSNPIERYA 114 (114)
T ss_pred hhhcCchHHHHHHHHhcC
Confidence 689999999999999873
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=49.63 E-value=11 Score=32.53 Aligned_cols=25 Identities=28% Similarity=0.752 Sum_probs=16.7
Q ss_pred cCcCCcCCCCCCc-hhHHHHHHHhhC
Q 022738 248 REPLIHQQPIAHS-DIWSSRIREKYG 272 (293)
Q Consensus 248 r~pll~~~~~~~~-d~ws~rmrekyg 272 (293)
.-||+...+|+|+ |.|.+|+.|.|-
T Consensus 9 ~IPll~~~AGPrd~~~W~~RLKEEy~ 34 (161)
T PF08694_consen 9 KIPLLKTKAGPRDGDLWVQRLKEEYQ 34 (161)
T ss_dssp CS---SS---TTSCHHHHHHHHHHHH
T ss_pred hCccccccCCCCCHHHHHHHHHHHHH
Confidence 4699999998888 999999999884
No 29
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=48.04 E-value=11 Score=28.34 Aligned_cols=18 Identities=6% Similarity=0.139 Sum_probs=15.9
Q ss_pred CCCCCchHHHHHHHHhhc
Q 022738 182 FDPTGELDSLRSFIEDNV 199 (293)
Q Consensus 182 ~y~tGC~~~l~~~l~~n~ 199 (293)
.|.+||.+++.+|+++|+
T Consensus 67 ~~~~gC~~~i~~~~~~~~ 84 (84)
T cd03152 67 LITKSCPDAIDDVFNSKL 84 (84)
T ss_pred hccCCCcHHHHHHHHccC
Confidence 478899999999999874
No 30
>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr
Probab=47.18 E-value=11 Score=27.79 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=15.7
Q ss_pred CCCCCchHHHHHHHHhhc
Q 022738 182 FDPTGELDSLRSFIEDNV 199 (293)
Q Consensus 182 ~y~tGC~~~l~~~l~~n~ 199 (293)
.|++||.+++.+|++++.
T Consensus 73 ~~~~GC~~~~~~~~~~~~ 90 (90)
T cd03127 73 LYTEGCLEKLVDFLRSNL 90 (90)
T ss_pred hhhHccHHHHHHHHHhhC
Confidence 478999999999999863
No 31
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=45.75 E-value=15 Score=28.65 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.6
Q ss_pred CCC--CCchHHHHHHHHhhc
Q 022738 182 FDP--TGELDSLRSFIEDNV 199 (293)
Q Consensus 182 ~y~--tGC~~~l~~~l~~n~ 199 (293)
.|. +||.+++.+|+++|+
T Consensus 91 ~~~~~~GC~~~~~~~~~~~~ 110 (110)
T cd03155 91 IYKVEGGCIPKLEDFLYDHL 110 (110)
T ss_pred cccccCChHHHHHHHHHHhC
Confidence 466 899999999999874
No 32
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=44.33 E-value=57 Score=26.95 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 022738 15 KFLNFLQGFIGVSIILYSIWMLDQ 38 (293)
Q Consensus 15 ~~lN~l~~l~Gl~lI~~giwml~~ 38 (293)
..+-++++++|..++..|+.++..
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345567788899999999987764
No 33
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=43.85 E-value=25 Score=26.12 Aligned_cols=21 Identities=33% Similarity=0.808 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 022738 18 NFLQGFIGVSIILYSIWMLDQ 38 (293)
Q Consensus 18 N~l~~l~Gl~lI~~giwml~~ 38 (293)
..+++++|+.++++|+|.+.+
T Consensus 47 ~~ll~~vg~gli~~gi~~~~~ 67 (73)
T PF06724_consen 47 RWLLGAVGLGLIGYGIWQFVK 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999998865
No 34
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=42.69 E-value=8.2 Score=40.34 Aligned_cols=28 Identities=18% Similarity=0.637 Sum_probs=0.0
Q ss_pred CcchhhhHHHhhhHHH---------HHHHHHHHHHHh
Q 022738 115 PAPWFIYSFMGVGILV---------CCIALIGCIAAE 142 (293)
Q Consensus 115 ~~~wfIY~~i~vG~i~---------~iis~~GcigA~ 142 (293)
--||.+++.|+++.+. |.+||+||||-.
T Consensus 545 KWPWyVWL~i~~~li~~~~~l~~~~~~TGCCGc~~C~ 581 (610)
T PF01601_consen 545 KWPWYVWLAIILALIAFALILLWCCCMTGCCGCCGCF 581 (610)
T ss_dssp -------------------------------------
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchh
Confidence 3478777777666543 345566444433
No 35
>cd03162 peripherin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to her
Probab=41.90 E-value=13 Score=31.77 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCCchHHHHHHHHhhc
Q 022738 175 RWEKDLPFDPTGELDSLRSFIEDNV 199 (293)
Q Consensus 175 dW~~~iP~y~tGC~~~l~~~l~~n~ 199 (293)
....+.++|++||.+++.+|+++.+
T Consensus 119 ~~~~~~~i~~~GC~~~l~~~~~~~~ 143 (143)
T cd03162 119 YQTEELNLWTRGCREALLEYYTSKM 143 (143)
T ss_pred cCcccccchHHHHHHHHHHHHHhcC
Confidence 3456688999999999999998753
No 36
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=40.53 E-value=15 Score=31.59 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=10.5
Q ss_pred hhHHHHHHHhhCCCCCCC
Q 022738 261 DIWSSRIREKYGLNGGGE 278 (293)
Q Consensus 261 d~ws~rmrekygl~~~~~ 278 (293)
..-+++||+||||..++.
T Consensus 62 e~mRq~IRdKY~l~k~e~ 79 (139)
T PF05835_consen 62 EKMRQHIRDKYGLKKKEE 79 (139)
T ss_dssp HHHHHHHHHHHT------
T ss_pred HHHHHHHHhhcccccccc
Confidence 566899999999999876
No 37
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=38.35 E-value=32 Score=31.99 Aligned_cols=33 Identities=18% Similarity=0.481 Sum_probs=28.6
Q ss_pred CCcchhhhHHHhhhHHHHHHHHHHHHHHhhccc
Q 022738 114 LPAPWFIYSFMGVGILVCCIALIGCIAAEAISG 146 (293)
Q Consensus 114 l~~~wfIY~~i~vG~i~~iis~~GcigA~~~n~ 146 (293)
-..+|+-|++|++|.++++-++++.+=+.+.-+
T Consensus 191 ~~~~wla~~Lm~~G~fI~irsi~dY~rVKR~Er 223 (233)
T PF10176_consen 191 QSNPWLAYILMAFGWFIFIRSIIDYWRVKRMER 223 (233)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999998886554
No 38
>PF15050 SCIMP: SCIMP protein
Probab=37.73 E-value=64 Score=27.23 Aligned_cols=33 Identities=30% Similarity=0.288 Sum_probs=23.6
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022738 193 SFIEDNVDICKWVGITVVIVQALSLLLAIILRAM 226 (293)
Q Consensus 193 ~~l~~n~~ii~~v~l~v~iiQilgillA~~L~~~ 226 (293)
+|-++|+.++..+++.+ +--.+|+++-|+.+..
T Consensus 2 ~WWr~nFWiiLAVaII~-vS~~lglIlyCvcR~~ 34 (133)
T PF15050_consen 2 SWWRDNFWIILAVAIIL-VSVVLGLILYCVCRWQ 34 (133)
T ss_pred chHHhchHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 68899999988888543 4456777777766644
No 39
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=36.01 E-value=17 Score=39.24 Aligned_cols=24 Identities=21% Similarity=0.096 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcc
Q 022738 149 LCFYAILKIILFLLEAALVAFIAI 172 (293)
Q Consensus 149 L~~Y~vll~lLillEia~~a~i~~ 172 (293)
=.+|.++++++.++-++.++.+|.
T Consensus 139 R~~l~~~L~~~~~~il~g~i~aF~ 162 (806)
T PF05478_consen 139 RGCLGILLLLLTLIILFGVICAFV 162 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544443
No 40
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=35.26 E-value=58 Score=29.19 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=16.7
Q ss_pred CCchhHHHHHHHhhCCCCCCCc
Q 022738 258 AHSDIWSSRIREKYGLNGGGEQ 279 (293)
Q Consensus 258 ~~~d~ws~rmrekygl~~~~~~ 279 (293)
..+|.+..-|+|++|++..+..
T Consensus 108 ~~~~~~~~m~~ee~g~~~~~~~ 129 (213)
T PF01988_consen 108 KDKDALDFMMREELGLSPEEEE 129 (213)
T ss_pred hCchHHHHHHhhhccCCccccc
Confidence 3345699999999999985544
No 41
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=34.97 E-value=36 Score=32.04 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=24.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhcc
Q 022738 146 GCCLCFYAILKIILFLLEAALVAFIAI 172 (293)
Q Consensus 146 ~c~L~~Y~vll~lLillEia~~a~i~~ 172 (293)
+-||.+|..++++++++-++++.|++.
T Consensus 34 KrcLY~fvLlL~i~ivvNLalTiWIlk 60 (292)
T KOG3950|consen 34 KRCLYTFVLLLMILIVVNLALTIWILK 60 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999886
No 42
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=31.80 E-value=39 Score=27.98 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022738 203 KWVGITVVIVQALSLLLAIILRA 225 (293)
Q Consensus 203 ~~v~l~v~iiQilgillA~~L~~ 225 (293)
+|+.++++++=++.+++.+++.+
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666665555543
No 43
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=30.58 E-value=81 Score=28.74 Aligned_cols=21 Identities=19% Similarity=0.386 Sum_probs=16.0
Q ss_pred CchhHHHHHHHhhCCCCCCCc
Q 022738 259 HSDIWSSRIREKYGLNGGGEQ 279 (293)
Q Consensus 259 ~~d~ws~rmrekygl~~~~~~ 279 (293)
+++.-...|||+||++..+.+
T Consensus 114 ~~~~~~~~~~~e~g~~~~~~~ 134 (218)
T cd02432 114 AKDALEAHARDELGITEGEYA 134 (218)
T ss_pred hcChHHHHHHHhcCCCCCCCC
Confidence 345678899999999886654
No 44
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.33 E-value=79 Score=27.42 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 022738 15 KFLNFLQGFIGVSIILYSIWML 36 (293)
Q Consensus 15 ~~lN~l~~l~Gl~lI~~giwml 36 (293)
.+.+++..++|+++++.|+-.+
T Consensus 5 ~i~~i~~iilgilli~~gI~~L 26 (191)
T PF04156_consen 5 RIISIILIILGILLIASGIAAL 26 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666555555443
No 45
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=29.88 E-value=67 Score=29.31 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=15.7
Q ss_pred CCCchhH-HHHHHHhhCCCCCC
Q 022738 257 IAHSDIW-SSRIREKYGLNGGG 277 (293)
Q Consensus 257 ~~~~d~w-s~rmrekygl~~~~ 277 (293)
..++|.| ...|||++|++..+
T Consensus 108 ~~~~~~~~~~m~~~elg~~~~~ 129 (225)
T cd02434 108 SKYRKLFVDIMMTEELGLIPDD 129 (225)
T ss_pred HhCchhhHHHHHHhhccCCCCc
Confidence 3344666 77899999998865
No 46
>PRK07375 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=29.67 E-value=3.1e+02 Score=22.29 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=11.1
Q ss_pred HhhhHHHHHHHHHHHHH
Q 022738 124 MGVGILVCCIALIGCIA 140 (293)
Q Consensus 124 i~vG~i~~iis~~Gcig 140 (293)
..++++++.+|+.|.+-
T Consensus 6 ~~~~~~Lf~iG~~gll~ 22 (112)
T PRK07375 6 YALAIALLVIGLYGLIF 22 (112)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45566777777776664
No 47
>cd03157 TM4SF12_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).
Probab=29.12 E-value=36 Score=27.20 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.9
Q ss_pred CCCCCchHHHHHHHHhh
Q 022738 182 FDPTGELDSLRSFIEDN 198 (293)
Q Consensus 182 ~y~tGC~~~l~~~l~~n 198 (293)
+|++||++++.+|++..
T Consensus 86 iy~~GC~~~i~~~l~~~ 102 (103)
T cd03157 86 LYQEGCGPKIYSFIRGT 102 (103)
T ss_pred ccccchHHHHHHHHHhc
Confidence 68899999999999863
No 48
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=29.03 E-value=3.3e+02 Score=27.15 Aligned_cols=64 Identities=20% Similarity=0.327 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccc--cCCCCchhhhhhhhccCcCCcCCC----CCCchhHHHHHHHhhC
Q 022738 204 WVGITVVIVQALSLLLAIILRAMVSTRRT--NFDEEDDYESERIRIREPLIHQQP----IAHSDIWSSRIREKYG 272 (293)
Q Consensus 204 ~v~l~v~iiQilgillA~~L~~~i~~~~~--~ydsdD~~~~~r~~~r~pll~~~~----~~~~d~ws~rmrekyg 272 (293)
..++.+.++-.+++++-+.|..+++||.. +|+ ||..-.|+ +.+-++-. -.-++-|+.-+||-.-
T Consensus 192 slgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi--~~Ka~~rr---~~~~~d~~~~f~ypydlgWr~n~r~vf~ 261 (414)
T KOG1314|consen 192 SLGLAIGVVLALTMLFFIQLKQILNNRTGIESWI--VEKAMDRR---EYYFNDDEGEFTYPYDLGWRINLREVFF 261 (414)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHH--HHHHHHHH---HhhccCCCCceeeeccccccccHHHHhh
Confidence 34444444555666666777766665432 132 33334443 23333311 3334559988888753
No 49
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=28.09 E-value=6.9e+02 Score=26.34 Aligned_cols=44 Identities=23% Similarity=0.365 Sum_probs=30.9
Q ss_pred CCCchHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022738 184 PTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMV 227 (293)
Q Consensus 184 ~tGC~~~l~~~l~~n~~ii~~v~l~v~iiQilgillA~~L~~~i 227 (293)
..+-...+...+.....+....++...++.++.+++.+.++..+
T Consensus 209 ~i~~~~~~~~~~~~~~~~l~~~~Iv~~v~~vv~~l~~i~lr~RI 252 (577)
T KOG1362|consen 209 TIGFTSSLFVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRI 252 (577)
T ss_pred eeecchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666666666688888888888888888777654
No 50
>PRK11901 hypothetical protein; Reviewed
Probab=27.66 E-value=53 Score=32.03 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=19.0
Q ss_pred hHHHhhhHHHHHHHHHHHHHHhh
Q 022738 121 YSFMGVGILVCCIALIGCIAAEA 143 (293)
Q Consensus 121 Y~~i~vG~i~~iis~~GcigA~~ 143 (293)
+++||+|++++++=++|+-.|.+
T Consensus 37 h~MiGiGilVLlLLIi~IgSALk 59 (327)
T PRK11901 37 HMMIGIGILVLLLLIIAIGSALK 59 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 58999999998888888766664
No 51
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=24.18 E-value=1.1e+02 Score=19.98 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHhh
Q 022738 122 SFMGVGILVCCIALIGCIAAEA 143 (293)
Q Consensus 122 ~~i~vG~i~~iis~~GcigA~~ 143 (293)
+-+.+|.+++++++.|.+....
T Consensus 11 ~Gl~~g~~l~~~~~tG~~~~f~ 32 (37)
T PF13706_consen 11 LGLILGLLLFVIFLTGAVMVFR 32 (37)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 7788999999999999987764
No 52
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.90 E-value=2.3e+02 Score=24.45 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=13.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHh
Q 022738 122 SFMGVGILVCCIALIGCIAAE 142 (293)
Q Consensus 122 ~~i~vG~i~~iis~~GcigA~ 142 (293)
+++++|+++.+.|+.+++-..
T Consensus 10 ~~iilgilli~~gI~~Lv~~~ 30 (191)
T PF04156_consen 10 ILIILGILLIASGIAALVLFI 30 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777776666666644443
No 53
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=23.77 E-value=71 Score=29.36 Aligned_cols=26 Identities=23% Similarity=0.306 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 022738 13 ILKFLNFLQGFIGVSIILYSIWMLDQ 38 (293)
Q Consensus 13 lL~~lN~l~~l~Gl~lI~~giwml~~ 38 (293)
.=.+||+++.++-+++|+++..+|+-
T Consensus 12 ~N~iLNiaI~IV~lLIiiva~~lf~~ 37 (217)
T PF07423_consen 12 TNKILNIAIGIVSLLIIIVAYQLFFG 37 (217)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhheec
Confidence 45789999999998888888877763
No 54
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=23.75 E-value=38 Score=29.47 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=12.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHhh
Q 022738 122 SFMGVGILVCCIALIGCIAAEA 143 (293)
Q Consensus 122 ~~i~vG~i~~iis~~GcigA~~ 143 (293)
+.|++|++++++.+++.+++..
T Consensus 78 ~~iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 78 TGIIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred eeeeeehhhHHHHHHHhHhhhe
Confidence 4456666665555555555443
No 55
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=23.51 E-value=73 Score=30.04 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=27.1
Q ss_pred HhhcccchhHHHHHHHHHHHHHHHHHHHhhcc
Q 022738 141 AEAISGCCLCFYAILKIILFLLEAALVAFIAI 172 (293)
Q Consensus 141 A~~~n~c~L~~Y~vll~lLillEia~~a~i~~ 172 (293)
-.-.++.||+++.++++++.++-+++..+++.
T Consensus 6 i~Gwrk~cly~~vllL~il~iiNL~LTiwIl~ 37 (264)
T PF04790_consen 6 IYGWRKRCLYLFVLLLFILAIINLALTIWILK 37 (264)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 34467889999999999999999999988775
No 56
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=22.77 E-value=3.9e+02 Score=23.23 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=28.5
Q ss_pred chhhhHHHhhhHHHHHHHHHHHHHHhhcccc-------------hhHHHHHHHHHHHH
Q 022738 117 PWFIYSFMGVGILVCCIALIGCIAAEAISGC-------------CLCFYAILKIILFL 161 (293)
Q Consensus 117 ~wfIY~~i~vG~i~~iis~~GcigA~~~n~c-------------~L~~Y~vll~lLil 161 (293)
|-.++.....++++++++++-.....+..+. -+..|.++++-+++
T Consensus 29 P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~~~~~h~h~~~~~~~~~~y~l~~iPll~ 86 (182)
T PF09323_consen 29 PRYIPLLYFAAILLLILAIVQLWRWFRPKRRKEDCHDHGHSKSKKLWSYFLFLIPLLI 86 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 3345567777888888888877777655443 45556665554443
No 57
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=21.86 E-value=2.2e+02 Score=20.95 Aligned_cols=33 Identities=9% Similarity=0.338 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCCCCchhh
Q 022738 209 VVIVQALSLLLAIILRAMVSTRRTNFDEEDDYE 241 (293)
Q Consensus 209 v~iiQilgillA~~L~~~i~~~~~~ydsdD~~~ 241 (293)
+.++-++++.++.+.|...++..+.+.++|+.+
T Consensus 13 i~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~e 45 (58)
T PF13314_consen 13 IILIVLFGASFTLFIRRILINSNAKKQDVDSME 45 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchhHHH
Confidence 444556778888888888766666666655543
No 58
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=21.46 E-value=92 Score=28.26 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=17.5
Q ss_pred hhhhHHHhhhHHHHHHHHHHHH
Q 022738 118 WFIYSFMGVGILVCCIALIGCI 139 (293)
Q Consensus 118 wfIY~~i~vG~i~~iis~~Gci 139 (293)
+.+++++.+|++++++|-+|.+
T Consensus 7 iI~~vLLliG~~f~ligaIGLl 28 (197)
T PRK12585 7 IIISIMILIGGLLSILAAIGVI 28 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999888864
No 59
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=20.89 E-value=2.1e+02 Score=21.34 Aligned_cols=30 Identities=13% Similarity=0.332 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022738 8 ISFAFILKFLNFLQGFIGVSIILYSIWMLD 37 (293)
Q Consensus 8 ~~lk~lL~~lN~l~~l~Gl~lI~~giwml~ 37 (293)
.++|.+-+.+.+++++.|...+.++.+++.
T Consensus 5 ~~fk~iW~~~DIi~Fila~i~i~it~F~~n 34 (63)
T PF06341_consen 5 KFFKTIWKYFDIILFILAMIFINITAFLIN 34 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999998764
No 60
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=20.07 E-value=4.5e+02 Score=21.21 Aligned_cols=31 Identities=10% Similarity=0.394 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 022738 11 AFILKFLNFLQGFIGVSIILYSIWMLDQWNH 41 (293)
Q Consensus 11 k~lL~~lN~l~~l~Gl~lI~~giwml~~~~~ 41 (293)
..+..+.+.+++++.++.++.++|-+.+--.
T Consensus 2 ~~l~~~~~~i~~~l~~~~~~~~v~Alv~aa~ 32 (100)
T PF10724_consen 2 SFLFQIQGWILLALSLVALVLAVWALVDAAR 32 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777888889999999999999887544
Done!