Query 022738
Match_columns 293
No_of_seqs 211 out of 1285
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 10:19:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kpa_A Probable ubiquitin fold 54.0 7.3 0.00025 32.9 2.7 26 247-272 18-44 (168)
2 1g8q_A CD81 antigen, extracell 49.9 6.7 0.00023 28.5 1.6 17 182-198 73-89 (90)
3 3uky_C Nuclear CAP-binding pro 46.5 6.3 0.00022 24.3 0.8 15 228-242 6-20 (32)
4 3ukx_C Bimax2 peptide; arm rep 41.3 6.7 0.00023 23.1 0.3 17 228-244 8-24 (28)
5 1kil_E Complexin I snare-compl 36.0 14 0.00048 25.0 1.3 13 261-273 37-49 (49)
6 2z6o_A UFM1-conjugating enzyme 35.8 21 0.0007 30.5 2.7 26 247-272 16-42 (172)
7 3ukw_C Bimax1 peptide; arm rep 23.7 21 0.00071 21.0 0.4 16 229-246 9-24 (28)
8 3rk3_E Complexin-1; snare prot 23.2 31 0.0011 24.4 1.3 15 261-275 40-54 (63)
9 1l4a_E Synaphin A; snare, snar 20.8 36 0.0012 25.1 1.3 17 261-277 44-60 (79)
10 2wgo_A Ranaspumin-2, RSN-2; cy 19.5 47 0.0016 24.7 1.7 18 261-278 29-46 (98)
No 1
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=54.04 E-value=7.3 Score=32.94 Aligned_cols=26 Identities=31% Similarity=0.726 Sum_probs=22.9
Q ss_pred ccCcCCcCCCCCCc-hhHHHHHHHhhC
Q 022738 247 IREPLIHQQPIAHS-DIWSSRIREKYG 272 (293)
Q Consensus 247 ~r~pll~~~~~~~~-d~ws~rmrekyg 272 (293)
..-||+.+.+|.|+ |+|.+|+.|.|-
T Consensus 18 ~~ipll~t~agPrd~~~w~~RlkeEy~ 44 (168)
T 3kpa_A 18 SRIPLLKTKAGPRDGDKWTARLKEEYA 44 (168)
T ss_dssp TTSCCCCCCCCTTSTHHHHHHHHHHHH
T ss_pred hhCceeeccCCCCCHHHHHHHHHHHHH
Confidence 46799999998887 999999999873
No 2
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=49.90 E-value=6.7 Score=28.48 Aligned_cols=17 Identities=0% Similarity=0.004 Sum_probs=15.2
Q ss_pred CCCCCchHHHHHHHHhh
Q 022738 182 FDPTGELDSLRSFIEDN 198 (293)
Q Consensus 182 ~y~tGC~~~l~~~l~~n 198 (293)
.|++||.+++.+|+++|
T Consensus 73 ~~~~GC~~~i~~~~~~n 89 (90)
T 1g8q_A 73 LFKEDCHQKIDDLFSGK 89 (90)
T ss_dssp HTSCCHHHHHHHHHHTC
T ss_pred CccCCcHHHHHHHHHhC
Confidence 57889999999999886
No 3
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=46.47 E-value=6.3 Score=24.26 Aligned_cols=15 Identities=40% Similarity=0.933 Sum_probs=11.4
Q ss_pred ccccccCCCCchhhh
Q 022738 228 STRRTNFDEEDDYES 242 (293)
Q Consensus 228 ~~~~~~ydsdD~~~~ 242 (293)
+.++.+||+||.|-.
T Consensus 6 ~KRr~dfd~ddgYrD 20 (32)
T 3uky_C 6 RKRRGDFDEDENYRD 20 (32)
T ss_pred ccccccCcccccccc
Confidence 467788999998843
No 4
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=41.34 E-value=6.7 Score=23.14 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=11.2
Q ss_pred ccccccCCCCchhhhhh
Q 022738 228 STRRTNFDEEDDYESER 244 (293)
Q Consensus 228 ~~~~~~ydsdD~~~~~r 244 (293)
+.+..|||+|||-...|
T Consensus 8 rkrkrewdddddppkkr 24 (28)
T 3ukx_C 8 RKRKREWDDDDDPPKKR 24 (28)
T ss_dssp CCCCCCCCCSSSCCSCC
T ss_pred HHhhcccccCCCchhhh
Confidence 45667899888854333
No 5
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=35.96 E-value=14 Score=25.04 Aligned_cols=13 Identities=38% Similarity=0.912 Sum_probs=10.1
Q ss_pred hhHHHHHHHhhCC
Q 022738 261 DIWSSRIREKYGL 273 (293)
Q Consensus 261 d~ws~rmrekygl 273 (293)
..-++-+|+|||+
T Consensus 37 E~mRq~IRdKY~i 49 (49)
T 1kil_E 37 EVMRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCC
Confidence 4457789999996
No 6
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=35.81 E-value=21 Score=30.52 Aligned_cols=26 Identities=19% Similarity=0.607 Sum_probs=21.8
Q ss_pred ccCcCCcCCCCCCc-hhHHHHHHHhhC
Q 022738 247 IREPLIHQQPIAHS-DIWSSRIREKYG 272 (293)
Q Consensus 247 ~r~pll~~~~~~~~-d~ws~rmrekyg 272 (293)
..-||+.+.+|.|+ |+|.+|+.|-|-
T Consensus 16 ~~ip~m~t~a~p~~~~~w~~RL~eE~k 42 (172)
T 2z6o_A 16 SEIPVLKTNAGPRDRELWVQRLKEEYQ 42 (172)
T ss_dssp TTSCCCCCCCCTTCTHHHHHHHHHHHH
T ss_pred HhCcccccccCCCccHHHHHHHHHHHH
Confidence 46799999888888 999999987664
No 7
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=23.67 E-value=21 Score=21.02 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=8.6
Q ss_pred cccccCCCCchhhhhhhh
Q 022738 229 TRRTNFDEEDDYESERIR 246 (293)
Q Consensus 229 ~~~~~ydsdD~~~~~r~~ 246 (293)
.+.-+||+|+| |+|.+
T Consensus 9 krplewdedee--pprkr 24 (28)
T 3ukw_C 9 KRPLEWDEDEE--PPRKR 24 (28)
T ss_dssp CCCCCCCGGGS--CCSSC
T ss_pred cCCcccccccC--cchhh
Confidence 44456765554 55543
No 8
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=23.19 E-value=31 Score=24.42 Aligned_cols=15 Identities=33% Similarity=0.663 Sum_probs=11.6
Q ss_pred hhHHHHHHHhhCCCC
Q 022738 261 DIWSSRIREKYGLNG 275 (293)
Q Consensus 261 d~ws~rmrekygl~~ 275 (293)
..-++-||+|||+..
T Consensus 40 E~mRQ~IRdKY~ikK 54 (63)
T 3rk3_E 40 EAVRQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHhccch
Confidence 456788999999986
No 9
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=20.80 E-value=36 Score=25.12 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=12.1
Q ss_pred hhHHHHHHHhhCCCCCC
Q 022738 261 DIWSSRIREKYGLNGGG 277 (293)
Q Consensus 261 d~ws~rmrekygl~~~~ 277 (293)
..-++-||+|||+..-+
T Consensus 44 E~mRq~IRdKY~ikKKe 60 (79)
T 1l4a_E 44 EEMRQTIRDKYGLKKKV 60 (79)
T ss_dssp HHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHhcccccc
Confidence 56688899999998733
No 10
>2wgo_A Ranaspumin-2, RSN-2; cystatin fold, surfactant protein; NMR {Engystomops pustulosus}
Probab=19.53 E-value=47 Score=24.66 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=15.3
Q ss_pred hhHHHHHHHhhCCCCCCC
Q 022738 261 DIWSSRIREKYGLNGGGE 278 (293)
Q Consensus 261 d~ws~rmrekygl~~~~~ 278 (293)
|.....+.+|||+||.+.
T Consensus 29 dkfqddikdkygvdtkdl 46 (98)
T 2wgo_A 29 DKFQDDIKDKYGVDTKDL 46 (98)
T ss_dssp HHSHHHHHHHTCCCTTTC
T ss_pred HHHHHhhhhhhCCCccce
Confidence 778888999999999654
Done!