Query 022738
Match_columns 293
No_of_seqs 211 out of 1285
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 10:19:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022738.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022738hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2in1a1 d.20.1.4 (A:3-164) Ufm 57.3 2.9 0.00021 32.9 2.7 26 247-272 9-35 (162)
2 d1nvma1 a.5.7.1 (A:291-341) 4- 13.7 26 0.0019 22.4 0.7 13 264-276 8-20 (51)
3 d2g3ra2 b.34.9.1 (A:1538-1603) 12.6 26 0.0019 23.1 0.5 10 264-273 56-65 (66)
4 d2bv3a4 d.58.11.1 (A:404-478) 8.2 37 0.0027 22.8 0.0 17 259-275 55-71 (75)
5 d1rh5b_ f.23.28.1 (B:) Preprot 6.9 2.9E+02 0.021 17.4 4.1 27 196-222 21-47 (56)
6 d1v54i_ f.23.3.1 (I:) Mitochon 6.6 2.3E+02 0.016 19.0 3.6 14 232-245 52-65 (73)
7 d1v54m_ f.23.7.1 (M:) Mitochon 5.4 2.2E+02 0.016 17.1 2.6 18 123-140 14-31 (43)
8 d1u19a_ f.13.1.2 (A:) Rhodopsi 5.4 3.3E+02 0.024 20.9 4.8 16 257-272 307-322 (348)
9 d1y7ma2 d.7.1.1 (A:1-48) Hypot 4.8 1.5E+02 0.011 17.6 1.6 13 266-278 14-26 (48)
10 d1wfya_ d.15.1.5 (A:) Regulato 4.6 2.1E+02 0.015 20.4 2.5 18 263-280 43-60 (104)
No 1
>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.35 E-value=2.9 Score=32.95 Aligned_cols=26 Identities=19% Similarity=0.607 Sum_probs=22.7
Q ss_pred ccCcCCcCCCCCCc-hhHHHHHHHhhC
Q 022738 247 IREPLIHQQPIAHS-DIWSSRIREKYG 272 (293)
Q Consensus 247 ~r~pll~~~~~~~~-d~ws~rmrekyg 272 (293)
..-||+...+|+|+ |.|.+|+.|.|-
T Consensus 9 ~~IPll~t~AGPrD~e~W~~RLKEEy~ 35 (162)
T d2in1a1 9 SEIPVLKTNAGPRDRELWVQRLKEEYQ 35 (162)
T ss_dssp TTSCCCCCCCCTTSHHHHHHHHHHHHH
T ss_pred HhCccccccCCCCCHHHHHHHHHHHHH
Confidence 35799999998888 899999999984
No 2
>d1nvma1 a.5.7.1 (A:291-341) 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain {Pseudomonas sp. [TaxId: 306]}
Probab=13.70 E-value=26 Score=22.44 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=10.7
Q ss_pred HHHHHHhhCCCCC
Q 022738 264 SSRIREKYGLNGG 276 (293)
Q Consensus 264 s~rmrekygl~~~ 276 (293)
..|..+|||+|+-
T Consensus 8 a~raa~~ygv~~r 20 (51)
T d1nvma1 8 AEIAAAKYNLKTL 20 (51)
T ss_dssp HHHHHHHHTCCHH
T ss_pred HHHHHHHhCCCHH
Confidence 4788999999973
No 3
>d2g3ra2 b.34.9.1 (A:1538-1603) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.60 E-value=26 Score=23.06 Aligned_cols=10 Identities=60% Similarity=1.232 Sum_probs=8.0
Q ss_pred HHHHHHhhCC
Q 022738 264 SSRIREKYGL 273 (293)
Q Consensus 264 s~rmrekygl 273 (293)
-.|+||.|||
T Consensus 56 gnrlreqygl 65 (66)
T d2g3ra2 56 GNRLREQYGL 65 (66)
T ss_dssp HHTTHHHHBC
T ss_pred hhhHHHhhCC
Confidence 4678999987
No 4
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]}
Probab=8.24 E-value=37 Score=22.79 Aligned_cols=17 Identities=12% Similarity=0.440 Sum_probs=3.7
Q ss_pred CchhHHHHHHHhhCCCC
Q 022738 259 HSDIWSSRIREKYGLNG 275 (293)
Q Consensus 259 ~~d~ws~rmrekygl~~ 275 (293)
|-+.--.|||++||++.
T Consensus 55 HLev~~~rL~~~~~vev 71 (75)
T d2bv3a4 55 SLEIIVDRLKREFKVDA 71 (75)
T ss_dssp HHTTCC-----------
T ss_pred HHHHHHHHHHHHHCCce
Confidence 34677788999998875
No 5
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.87 E-value=2.9e+02 Score=17.40 Aligned_cols=27 Identities=4% Similarity=0.314 Sum_probs=19.8
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHH
Q 022738 196 EDNVDICKWVGITVVIVQALSLLLAII 222 (293)
Q Consensus 196 ~~n~~ii~~v~l~v~iiQilgillA~~ 222 (293)
+|...+....+++++++-++|++.-..
T Consensus 21 ~Ef~~ia~v~~iG~~i~G~IGf~I~li 47 (56)
T d1rh5b_ 21 DEYLAVAKVTALGISLLGIIGYIIHVP 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888776543
No 6
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.65 E-value=2.3e+02 Score=18.98 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=10.1
Q ss_pred ccCCCCchhhhhhh
Q 022738 232 TNFDEEDDYESERI 245 (293)
Q Consensus 232 ~~ydsdD~~~~~r~ 245 (293)
.+||+..|++.-|.
T Consensus 52 knYDa~KdFe~Mr~ 65 (73)
T d1v54i_ 52 RNYDSMKDFEEMRK 65 (73)
T ss_dssp HTCCHHHHHHHHHH
T ss_pred HccchhhhHHHHHH
Confidence 45999999885543
No 7
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.44 E-value=2.2e+02 Score=17.13 Aligned_cols=18 Identities=11% Similarity=0.168 Sum_probs=13.6
Q ss_pred HHhhhHHHHHHHHHHHHH
Q 022738 123 FMGVGILVCCIALIGCIA 140 (293)
Q Consensus 123 ~i~vG~i~~iis~~Gcig 140 (293)
=.++|..+|+++|+|=-|
T Consensus 14 E~aigLt~~f~~~L~PaG 31 (43)
T d1v54m_ 14 EQAIGLSVTFLSFLLPAG 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHH
Confidence 357888889999887554
No 8
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.38 E-value=3.3e+02 Score=20.92 Aligned_cols=16 Identities=6% Similarity=0.046 Sum_probs=10.3
Q ss_pred CCCchhHHHHHHHhhC
Q 022738 257 IAHSDIWSSRIREKYG 272 (293)
Q Consensus 257 ~~~~d~ws~rmrekyg 272 (293)
.-++..-++.+++...
T Consensus 307 ~~~~~~fR~~~~~~l~ 322 (348)
T d1u19a_ 307 IMMNKQFRNCMVTTLC 322 (348)
T ss_dssp HHTCHHHHHHHHHHHT
T ss_pred HhcCHHHHHHHHHHhC
Confidence 5566666777776654
No 9
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=4.81 E-value=1.5e+02 Score=17.56 Aligned_cols=13 Identities=8% Similarity=0.222 Sum_probs=10.5
Q ss_pred HHHHhhCCCCCCC
Q 022738 266 RIREKYGLNGGGE 278 (293)
Q Consensus 266 rmrekygl~~~~~ 278 (293)
++.+|||++.++-
T Consensus 14 ~IA~~y~v~~~~i 26 (48)
T d1y7ma2 14 SIAADFRISTAAL 26 (48)
T ss_dssp HHHHHTTSCCCCC
T ss_pred HHHHHhCCCHHHH
Confidence 5788999998765
No 10
>d1wfya_ d.15.1.5 (A:) Regulator of G-protein signaling 14, RGS14 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.65 E-value=2.1e+02 Score=20.44 Aligned_cols=18 Identities=22% Similarity=-0.012 Sum_probs=14.0
Q ss_pred HHHHHHHhhCCCCCCCcc
Q 022738 263 WSSRIREKYGLNGGGEQY 280 (293)
Q Consensus 263 ws~rmrekygl~~~~~~~ 280 (293)
-=.-+-+||||...+-+-
T Consensus 43 vLrpIL~KYgl~l~~v~v 60 (104)
T d1wfya_ 43 ALQPILAKHGLSLDQVVL 60 (104)
T ss_dssp TTHHHHTTTTCCTTTCCB
T ss_pred HHHHHHHHhCCChhHeEE
Confidence 345578999999988776
Done!