BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022739
(293 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|115334981|gb|ABI94078.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase large protein isoform [Acer rubrum]
Length = 474
Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust.
Identities = 265/293 (90%), Positives = 282/293 (96%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR+DNVAD++++KLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 302 KFYWAPTREDRIGVCKGIFRSDNVADNELIKLVDTFPGQSIDFFGALRARVYDDEVRKWI 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SG+GV SIGK+LVNSK PTFEQP+MT++KLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 362 SGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLSEAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DAI+ G+FYGKAAQQ+NVPVPEGCTD A N+DPTARSDDGSCQYTL
Sbjct: 422 LGDANDDAIKRGSFYGKAAQQVNVPVPEGCTDRNAANYDPTARSDDGSCQYTL 474
>gi|115334977|gb|ABI94076.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase large protein isoform [Acer rubrum]
Length = 474
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 265/293 (90%), Positives = 281/293 (95%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR+DNVAD +++KLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 302 KFYWAPTREDRIGVCKGIFRSDNVADGELIKLVDTFPGQSIDFFGALRARVYDDEVRKWI 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SG+GV SIGK+LVNSK PTFEQP+MT++KLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 362 SGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLSEAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DAI+ G+FYGKAAQQ+NVPVPEGCTD A N+DPTARSDDGSCQYTL
Sbjct: 422 LGDANDDAIKRGSFYGKAAQQVNVPVPEGCTDRNAANYDPTARSDDGSCQYTL 474
>gi|255566442|ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223536483|gb|EEF38130.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
Length = 473
Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust.
Identities = 263/293 (89%), Positives = 277/293 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 181 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 240
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 241 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 300
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIF+ D VA +D+VKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 301 KFYWAPTREDRIGVCTGIFKTDGVAPEDVVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 360
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
GVGV IGKSLVNSKE PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKY+SEAA
Sbjct: 361 GGVGVEKIGKSLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYMSEAA 420
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LGEAN+D+I+ G FYGKAAQQ+N+PVPEGCTDPTA+NFDPTARSDDGSC Y
Sbjct: 421 LGEANQDSIERGTFYGKAAQQVNIPVPEGCTDPTAQNFDPTARSDDGSCTYKF 473
>gi|225434859|ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 1 [Vitis vinifera]
gi|297746032|emb|CBI16088.3| unnamed protein product [Vitis vinifera]
Length = 472
Score = 555 bits (1430), Expect = e-156, Method: Compositional matrix adjust.
Identities = 263/291 (90%), Positives = 276/291 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAP REDRIGVCKGIFR+DNV DDDIVK+VDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 302 KFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWI 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV IGK LVNSKE PTFEQP+MT+EKLLEYGNM+V EQENVKRVQLADKYLSEAA
Sbjct: 362 SGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSEAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 291
LG+AN D+I+ G FYGKAAQQ+ VPVPEGCTDP+A NFDPTARSD+GSCQY
Sbjct: 422 LGDANVDSIERGTFYGKAAQQVGVPVPEGCTDPSAANFDPTARSDNGSCQY 472
>gi|147856329|emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera]
Length = 472
Score = 555 bits (1430), Expect = e-156, Method: Compositional matrix adjust.
Identities = 263/291 (90%), Positives = 276/291 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAP REDRIGVCKGIFR+DNV DDDIVK+VDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 302 KFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWI 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV IGK LVNSKE PTFEQP+MT+EKLLEYGNM+V EQENVKRVQLADKYLSEAA
Sbjct: 362 SGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSEAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 291
LG+AN D+I+ G FYGKAAQQ+ VPVPEGCTDP+A NFDPTARSD+GSCQY
Sbjct: 422 LGDANVDSIERGTFYGKAAQQVGVPVPEGCTDPSAANFDPTARSDNGSCQY 472
>gi|357492323|ref|XP_003616450.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355517785|gb|AES99408.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 476
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 256/293 (87%), Positives = 280/293 (95%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGGTT 242
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 243 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRME 302
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR+DNV ++D+VK+VDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 303 KFYWAPTREDRIGVCKGIFRHDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWI 362
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GVG+ +IGK LVNSKE PTF+QP+M++EKLLEYGNM+VQEQENVKRVQLADKYL AA
Sbjct: 363 AGVGIETIGKKLVNSKEGPPTFDQPKMSLEKLLEYGNMLVQEQENVKRVQLADKYLEGAA 422
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DAI+SG+FYGKAAQQ+N+P+PEGCTDP A+NFDPTARSDDG+C YT
Sbjct: 423 LGDANQDAIKSGSFYGKAAQQVNIPIPEGCTDPNAKNFDPTARSDDGTCLYTF 475
>gi|359481752|ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Vitis vinifera]
gi|297740331|emb|CBI30513.3| unnamed protein product [Vitis vinifera]
Length = 474
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 259/293 (88%), Positives = 279/293 (95%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR+DN+ +D+VKLVDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 302 KFYWAPTREDRIGVCTGIFRSDNIPKEDMVKLVDTFPGQSIDFFGALRARVYDDEVRKWV 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ VGV IGK LVNSKE PTFE+P+MT++KLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 362 ASVGVEGIGKKLVNSKEGPPTFEKPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSEAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+ANEDAI+SG+FYGKAAQQ+N+PVPEGCTDP+A NFDPTARSDDGSC Y +
Sbjct: 422 LGDANEDAIKSGSFYGKAAQQVNLPVPEGCTDPSANNFDPTARSDDGSCLYQI 474
>gi|12620883|gb|AAG61121.1|AF329935_1 ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2
[Gossypium hirsutum]
Length = 435
Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust.
Identities = 262/293 (89%), Positives = 273/293 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGRMGGTT
Sbjct: 143 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTT 202
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 203 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 262
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVCKGIFR D V D+DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 263 KFYWAPTRDDRIGVCKGIFRTDGVRDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 322
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S VGV S+GK LVNS+E PTFEQP+MT+EKLLEYGNM+V EQENVKRVQLADKYLSEAA
Sbjct: 323 SEVGVASVGKKLVNSREGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAA 382
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LGEANED+I G FYGKAAQQ+ VPVPEGCTDP A+NFDPTARSDDG+C Y
Sbjct: 383 LGEANEDSINRGTFYGKAAQQVGVPVPEGCTDPNADNFDPTARSDDGTCTYKF 435
>gi|449441384|ref|XP_004138462.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Cucumis sativus]
Length = 474
Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust.
Identities = 259/293 (88%), Positives = 275/293 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGR+GGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR+DN+ +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W+
Sbjct: 302 KFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWV 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
VGV +I K LVNSKE PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 362 CSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+ANEDAI+SG FYGKAAQQ+++P+PEGCTDP A+NFDPTARSDDGSC Y L
Sbjct: 422 LGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVL 474
>gi|255584538|ref|XP_002532996.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223527225|gb|EEF29388.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
Length = 474
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 258/293 (88%), Positives = 277/293 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR DNV +DIVKLVDTFPGQSIDFFGA+RARVYDDEVR WI
Sbjct: 302 KFYWAPTREDRIGVCTGIFRTDNVPKEDIVKLVDTFPGQSIDFFGAIRARVYDDEVRAWI 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S +GV ++GK LVNSKEA PTFEQP+MT++KLLEYG+M+V+EQENVKRVQLADKYL EAA
Sbjct: 362 STIGVENVGKRLVNSKEAPPTFEQPKMTLDKLLEYGSMLVKEQENVKRVQLADKYLKEAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DAIQ+G+FYGKAAQQ+ VPVPEGCTDP+AENFDPTARSDDGSC Y
Sbjct: 422 LGDANDDAIQNGSFYGKAAQQVKVPVPEGCTDPSAENFDPTARSDDGSCLYEF 474
>gi|290766481|gb|ADD60243.1| rubisco activase [Glycine max]
Length = 474
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/293 (87%), Positives = 277/293 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPI+MSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTT
Sbjct: 182 MGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVC+GIFR D V +DI+KLVDTF GQSIDFFGALRARVYDDEVRKWI
Sbjct: 302 KFYWAPTRDDRIGVCQGIFRTDGVLKEDIIKLVDTFLGQSIDFFGALRARVYDDEVRKWI 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV +IGK LVNSKE PTFEQP+MT+ KLLEYGNM+VQEQENVKRVQLADKYL+EAA
Sbjct: 362 SGVGVENIGKKLVNSKEGPPTFEQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYLNEAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DAI++GNFYG+ AQQ++VPVPEGCTDPTAEN+DPTARSDDGSC Y
Sbjct: 422 LGDANDDAIKTGNFYGQGAQQVHVPVPEGCTDPTAENYDPTARSDDGSCTYKF 474
>gi|363806750|ref|NP_001242531.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766483|gb|ADD60244.1| rubisco activase [Glycine max]
Length = 478
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 256/292 (87%), Positives = 273/292 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMM AGELESGNAGEPAKLIRQRYREAADII KGKMCCL INDLD GAGR+GGTT
Sbjct: 186 MGINPIMMGAGELESGNAGEPAKLIRQRYREAADIISKGKMCCLFINDLDVGAGRLGGTT 245
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+ENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 246 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLIRDGRME 305
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR DNV +D+IVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 306 KFYWAPTRDDRVGVCKGIFRTDNVPEDEIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 365
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV IGK LVNSKE PTF+QP+MT+ KLLEYGNM+VQEQENVKRVQLADKYL+EAA
Sbjct: 366 SGVGVDLIGKKLVNSKEGPPTFDQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYLNEAA 425
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 292
LG+AN+DAI+ G FYGKAAQQ+ +PVPEGCTDP A NFDPTARSDDG+C YT
Sbjct: 426 LGDANQDAIKRGTFYGKAAQQVKIPVPEGCTDPNASNFDPTARSDDGTCLYT 477
>gi|307136240|gb|ADN34076.1| ribulose bisphosphate carboxylase/oxygenase activase 1 [Cucumis
melo subsp. melo]
Length = 474
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/293 (87%), Positives = 273/293 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGR+GGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR+DN+ +DI+KLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 302 KFYWAPTREDRIGVCSGIFRSDNIPKEDIIKLVDTFPGQSIDFFGALRARVYDDEVRKWA 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S VGV +I K LVNSKE PT EQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 362 SSVGVENIAKKLVNSKEGPPTLEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+ANEDAI+ G FYGKAAQQ+++P+PEGCTDP A+NFDPTARSDDGSC Y
Sbjct: 422 LGDANEDAIKRGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVF 474
>gi|94549022|gb|ABF38996.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Pachysandra terminalis]
Length = 314
Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust.
Identities = 258/293 (88%), Positives = 277/293 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTT
Sbjct: 22 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGTT 81
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP+IVTGNDFSTLYAPLIRDGRME
Sbjct: 82 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPVIVTGNDFSTLYAPLIRDGRME 141
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVC GIF+ DNV +D+VK+VDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 142 KFYWAPTRDDRIGVCTGIFKADNVPPEDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWI 201
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV +GK LVNS+E PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 202 SGVGVDKVGKKLVNSREGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLADKYLSEAA 261
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DAI SG FYGKAAQQ+ +PVPEGCTDP+A+NFDPTARSDDGSC Y L
Sbjct: 262 LGDANKDAINSGTFYGKAAQQVKLPVPEGCTDPSAQNFDPTARSDDGSCLYQL 314
>gi|356504250|ref|XP_003520910.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplastic-like
[Glycine max]
Length = 474
Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust.
Identities = 256/293 (87%), Positives = 276/293 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPI+MSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTT
Sbjct: 182 MGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVC+GIFR D V +DI+KLVDTF GQSIDFFGALR RVYDDEVRKWI
Sbjct: 302 KFYWAPTRDDRIGVCQGIFRTDGVLKEDIIKLVDTFLGQSIDFFGALRXRVYDDEVRKWI 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV +IGK LVNSKE PTFEQP+MT+ KLLEYGNM+VQEQENVKRVQLADKYL+EAA
Sbjct: 362 SGVGVENIGKKLVNSKEGPPTFEQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYLNEAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DAI++GNFYG+ AQQ++VPVPEGCTDPTAEN+DPTARSDDGSC Y
Sbjct: 422 LGDANDDAIKTGNFYGQGAQQVHVPVPEGCTDPTAENYDPTARSDDGSCTYKF 474
>gi|358248528|ref|NP_001240152.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766479|gb|ADD60242.1| alpha-form rubisco activase [Glycine max]
gi|290766489|gb|ADD60247.1| alpha-form rubisco activase [Glycine max]
Length = 478
Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/292 (88%), Positives = 271/292 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC L INDLDAGAGR+GGTT
Sbjct: 186 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAGAGRLGGTT 245
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 246 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 305
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVC GIFR DNV DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 306 KFYWAPTRDDRVGVCNGIFRTDNVPKDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 365
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S VGV IGK LVNSKE PTF+QP+MT+ KLLEYGNM+VQEQENVKRVQLADKYL EAA
Sbjct: 366 SVVGVDFIGKKLVNSKEGPPTFDQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYLKEAA 425
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 292
LG+AN+D+I G FYGKAAQQ+N+PVPEGCTDP A NFDPTARSDDG+C YT
Sbjct: 426 LGDANQDSINRGTFYGKAAQQVNIPVPEGCTDPNASNFDPTARSDDGTCLYT 477
>gi|78100212|gb|ABB20913.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2
[Gossypium hirsutum]
Length = 421
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 258/293 (88%), Positives = 272/293 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGRMGGTT
Sbjct: 129 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTT 188
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 189 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 248
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR D + D+DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 249 KFYWAPTRDDRVGVCKGIFRTDGIPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 308
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S VGV +GK LVNS++ PTFEQP+MT+EKLLEYGNM+V EQENVKRVQLADKYLSEAA
Sbjct: 309 SDVGVAGVGKKLVNSRDGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAA 368
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LGEANED+I G FYGKAAQQ+ VPVPEGCTDP A+NFDPTARSDDG+C Y
Sbjct: 369 LGEANEDSINRGTFYGKAAQQVGVPVPEGCTDPNADNFDPTARSDDGTCTYQF 421
>gi|118486739|gb|ABK95205.1| unknown [Populus trichocarpa]
Length = 475
Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust.
Identities = 258/292 (88%), Positives = 274/292 (93%), Gaps = 1/292 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
MGI+PIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCL INDLDAGAGR+GGT
Sbjct: 184 MGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLGGT 243
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 244 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRM 303
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYWAPTREDRIGVC GIF+ DNV +DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 304 EKFYWAPTREDRIGVCIGIFKTDNVPEDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 363
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
+SGVGV SIGK LVNS+E PTFEQP MT+EKL EYGNM+V+EQENVKRVQLADKYLS+A
Sbjct: 364 VSGVGVESIGKKLVNSREGPPTFEQPPMTVEKLFEYGNMLVKEQENVKRVQLADKYLSDA 423
Query: 240 ALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 291
ALGEAN+DAI+ G FYG+AAQQ+ VP+PEGCTDP A NFDPTARSDDGSC Y
Sbjct: 424 ALGEANQDAIERGTFYGQAAQQVKVPIPEGCTDPNAANFDPTARSDDGSCSY 475
>gi|357469233|ref|XP_003604901.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355505956|gb|AES87098.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 476
Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust.
Identities = 254/293 (86%), Positives = 275/293 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGI+PIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 184 MGISPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGGTT 243
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 244 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRME 303
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVC+GIFR D V DDIVK+VDTFPGQSIDFFGALRARVYDDEVR WI
Sbjct: 304 KFYWAPTRDDRVGVCQGIFRTDGVPKDDIVKIVDTFPGQSIDFFGALRARVYDDEVRNWI 363
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SG+GV SIGK LVNSKE PTFEQP+MT++KLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 364 SGIGVESIGKRLVNSKEGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLSEAA 423
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DAI++GNFYG+ AQQ+ +PV EGC DP+AEN+DPTARSDDGSC YT
Sbjct: 424 LGDANDDAIKTGNFYGQGAQQVPLPVQEGCADPSAENYDPTARSDDGSCTYTF 476
>gi|13430336|gb|AAK25800.1|AF338239_1 rubisco activase [Zantedeschia aethiopica]
Length = 426
Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust.
Identities = 255/293 (87%), Positives = 275/293 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 134 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTT 193
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+ENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 194 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLIRDGRME 253
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVC GIFR+DNV +D++KLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 254 KFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSIDFFGALRARVYDDEVRKWI 313
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ +GV +GK LVNS E PTF QP+MT++KLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 314 AEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSEAA 373
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DAI++G+FYGKAAQQ NVPVPEGCTD A NFDPTARSDDGSC YTL
Sbjct: 374 LGDANQDAIKTGSFYGKAAQQANVPVPEGCTDRNATNFDPTARSDDGSCLYTL 426
>gi|13430332|gb|AAK25798.1|AF338237_1 rubisco activase, partial [Zantedeschia aethiopica]
Length = 436
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/293 (87%), Positives = 275/293 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 144 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTT 203
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+ENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 204 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLIRDGRME 263
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVC GIFR+DNV +D++KLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 264 KFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSIDFFGALRARVYDDEVRKWI 323
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ +GV +GK LVNS E PTF QP+MT++KLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 324 AEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSEAA 383
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DAI++G+FYGKAAQQ NVPVPEGCTD A NFDPTARSDDGSC YTL
Sbjct: 384 LGDANQDAIKTGSFYGKAAQQANVPVPEGCTDRNATNFDPTARSDDGSCLYTL 436
>gi|118489105|gb|ABK96359.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 476
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 257/294 (87%), Positives = 274/294 (93%), Gaps = 1/294 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCL INDLDAGAGR+GGT
Sbjct: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLGGT 242
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 243 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRM 302
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYWAPTR+DRIGVC GIF++D +A +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 303 EKFYWAPTRDDRIGVCIGIFKSDKIAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 362
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
ISGVGV SIGK LVNS++ PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEA
Sbjct: 363 ISGVGVDSIGKKLVNSRDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEA 422
Query: 240 ALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
+LGEAN+D+I G FYG+AAQQ+ VPV EGCTDP A NFDPTARSDDGSC Y
Sbjct: 423 SLGEANQDSIDRGTFYGQAAQQVKVPVAEGCTDPNAANFDPTARSDDGSCTYKF 476
>gi|68565782|sp|Q7X9A0.1|RCA1_LARTR RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1;
AltName: Full=RuBisCO activase alpha form; Flags:
Precursor
gi|32481065|gb|AAP83929.1| Rubisco activase alpha form precursor [Larrea tridentata]
Length = 476
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 261/295 (88%), Positives = 274/295 (92%), Gaps = 2/295 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVRKW+
Sbjct: 302 KFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWV 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S VGV +IGK LVNSKE P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAA
Sbjct: 362 SEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAA 421
Query: 241 LGEANEDAIQSGNFY-GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN DAI+ G FY G+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct: 422 LGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>gi|118487547|gb|ABK95600.1| unknown [Populus trichocarpa]
Length = 476
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 257/294 (87%), Positives = 273/294 (92%), Gaps = 1/294 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCL INDLDAGAGR+GGT
Sbjct: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLGGT 242
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 243 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 302
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYWAPTR+DRIGVC GIF++D + +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 303 EKFYWAPTRDDRIGVCIGIFKSDKIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 362
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
+SGVGV SIGK LVNS+E PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEA
Sbjct: 363 VSGVGVDSIGKKLVNSREGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEA 422
Query: 240 ALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
+LGEAN+D+I G FYG+AAQQ+ VPV EGCTDP A NFDPTARSDDGSC Y
Sbjct: 423 SLGEANQDSIDRGTFYGQAAQQVKVPVAEGCTDPNAANFDPTARSDDGSCTYKF 476
>gi|224109480|ref|XP_002315210.1| predicted protein [Populus trichocarpa]
gi|222864250|gb|EEF01381.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 257/292 (88%), Positives = 273/292 (93%), Gaps = 1/292 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCL INDLDAGAGR+GGT
Sbjct: 133 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLGGT 192
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 193 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 252
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYWAPTR+DRIGVC GIF++D + +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 253 EKFYWAPTRDDRIGVCIGIFKSDKIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 312
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
+SGVGV SIGK LVNS+E PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEA
Sbjct: 313 VSGVGVDSIGKKLVNSREGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEA 372
Query: 240 ALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 291
+LGEAN+D+I G FYG+AAQQ+ VPV EGCTDP A NFDPTARSDDGSC Y
Sbjct: 373 SLGEANQDSIDRGTFYGQAAQQVKVPVAEGCTDPNAANFDPTARSDDGSCTY 424
>gi|357155664|ref|XP_003577195.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic-like [Brachypodium distachyon]
Length = 465
Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust.
Identities = 247/293 (84%), Positives = 274/293 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 173 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTT 232
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 233 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 292
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC+GIF+ DN++D+ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 293 KFYWAPTREDRIGVCRGIFQTDNISDESVIKIVDTFPGQSIDFFGALRARVYDDEVRKWV 352
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S G+ +IGK LVNSK+ +FEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLADKY+SEAA
Sbjct: 353 SSTGIENIGKKLVNSKDGPVSFEQPKMTIEKLLEYGHMLVQEQDNVKRVQLADKYMSEAA 412
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN DA+++G+FYGK AQQ N+PVPEGCTD AEN+DPTARSDDGSC YT
Sbjct: 413 LGDANSDAMKTGSFYGKGAQQGNLPVPEGCTDRNAENYDPTARSDDGSCLYTF 465
>gi|109940135|sp|P93431.2|RCA_ORYSJ RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|8918359|dbj|BAA97583.1| RuBisCO activase large isoform precursor [Oryza sativa (japonica
cultivar-group)]
gi|32352158|dbj|BAC78572.1| ribulose-bisphosphate carboxylase activase large isoform precursor
protein [Oryza sativa Japonica Group]
gi|77552725|gb|ABA95522.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|125578108|gb|EAZ19330.1| hypothetical protein OsJ_34880 [Oryza sativa Japonica Group]
gi|218186228|gb|EEC68655.1| hypothetical protein OsI_37096 [Oryza sativa Indica Group]
Length = 466
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 251/294 (85%), Positives = 275/294 (93%), Gaps = 1/294 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 173 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 232
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 233 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 292
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 293 KFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWV 352
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAA
Sbjct: 353 SDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAA 412
Query: 241 LGEANEDAIQSGNFYGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN DA+++G+FYG+ AQQ N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct: 413 LGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYTF 466
>gi|297827581|ref|XP_002881673.1| hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp.
lyrata]
gi|297327512|gb|EFH57932.1| hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp.
lyrata]
Length = 474
Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust.
Identities = 251/293 (85%), Positives = 266/293 (90%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK++
Sbjct: 302 KFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFV 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
G+GV IGK LVNS+E P FEQP MT+EKL+EYGNM+V EQENVKRVQLAD YLS+AA
Sbjct: 362 EGLGVEKIGKRLVNSREGPPVFEQPEMTLEKLMEYGNMLVMEQENVKRVQLADTYLSQAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN DAI G FYGK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct: 422 LGDANADAIDRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>gi|18405145|ref|NP_565913.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|12643259|sp|P10896.2|RCA_ARATH RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|11762250|gb|AAG40401.1|AF325049_1 At2g39730 [Arabidopsis thaliana]
gi|166834|gb|AAA20202.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|2642155|gb|AAB87122.1| expressed protein [Arabidopsis thaliana]
gi|15810188|gb|AAL06995.1| At2g39730/T5I7.3_ [Arabidopsis thaliana]
gi|21594581|gb|AAM66023.1| unknown [Arabidopsis thaliana]
gi|330254620|gb|AEC09714.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 474
Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/293 (84%), Positives = 263/293 (89%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK++
Sbjct: 302 KFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFV 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GV IGK LVNS+E P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AA
Sbjct: 362 ESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN DAI G FYGK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct: 422 LGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>gi|116787538|gb|ABK24548.1| unknown [Picea sitchensis]
Length = 480
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 240/293 (81%), Positives = 272/293 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GINPIMMSAGELESG+AGEPAKL+R+RYREA+DI+KKGKMC L INDLDAGAGRMG TT
Sbjct: 185 LGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLDAGAGRMGSTT 244
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK++NPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 245 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRDGRME 304
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVC+GIFR DNV DD+V+LVDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 305 KFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWV 364
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+G G+ +IGK L+NSKE PTFE+P MT+EKLLEYGNM+V EQ+NVKRVQLADKY+SEAA
Sbjct: 365 AGTGIQNIGKKLINSKEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRVQLADKYMSEAA 424
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+ANED+I+ G FYG+AAQ +N+PVPEGCTDP A N+DPTARSD+GSC+Y
Sbjct: 425 LGDANEDSIKRGTFYGQAAQHVNLPVPEGCTDPRAANYDPTARSDNGSCEYEF 477
>gi|12643756|sp|Q40073.1|RCAA_HORVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
A, chloroplastic; Short=RA A; Short=RuBisCO activase A;
Flags: Precursor
gi|167097|gb|AAA63164.1| ribulose 1,5-bisphosphate carboxylase activase isoform 2 [Hordeum
vulgare subsp. vulgare]
Length = 464
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 242/293 (82%), Positives = 271/293 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 172 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 231
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 232 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRME 291
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 292 KFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWV 351
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AA
Sbjct: 352 GSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAA 411
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DA+++G+FYGK AQQ +PVPEGCTD A+N+DPTARSDDGSC YT
Sbjct: 412 LGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>gi|32481061|gb|AAP83927.1| Rubisco activase alpha form precursor [Deschampsia antarctica]
Length = 465
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/293 (83%), Positives = 271/293 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 173 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 232
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPI VTGNDFSTLYAPLI DGRME
Sbjct: 233 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIXVTGNDFSTLYAPLIPDGRME 292
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 293 KFYWAPTREDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWV 352
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AA
Sbjct: 353 SSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAA 412
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DA+++G+FYGK AQQ +PVPEGCTD A+NFDPTARSDDGSC YT
Sbjct: 413 LGDANKDAMKTGSFYGKGAQQGTLPVPEGCTDRDAKNFDPTARSDDGSCLYTF 465
>gi|23308421|gb|AAN18180.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/293 (84%), Positives = 263/293 (89%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL+INDLDAGAGRMGGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLLINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D + D+DIV LVD FP QSIDFFGALRARVYDDEVRK++
Sbjct: 302 KFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPDQSIDFFGALRARVYDDEVRKFV 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GV IGK LVNS+E P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AA
Sbjct: 362 ESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN DAI G FYGK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct: 422 LGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>gi|15450379|gb|AAK96483.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/293 (84%), Positives = 262/293 (89%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D + D+DIV LVD FP QSIDFFGALRARVYDDEVRK++
Sbjct: 302 KFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPDQSIDFFGALRARVYDDEVRKFV 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GV IGK LVNS+E P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AA
Sbjct: 362 ESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN DAI G FYGK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct: 422 LGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>gi|100614|pir||B23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A long form
precursor - barley (fragment)
gi|167089|gb|AAA62701.1| ribulose 1,5-bisphosphate carboxylase activase, partial [Hordeum
vulgare subsp. vulgare]
Length = 426
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/293 (82%), Positives = 270/293 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 134 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 193
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 194 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRME 253
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVCKGIF+ DNV D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 254 KFYWAPTRDDRIGVCKGIFQTDNVCDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWV 313
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AA
Sbjct: 314 GSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAA 373
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DA+++G+FYGK AQQ +PVPEGCTD A+N+DPTARSDDGSC YT
Sbjct: 374 LGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 426
>gi|293331415|ref|NP_001168488.1| uncharacterized protein LOC100382265 [Zea mays]
gi|223948617|gb|ACN28392.1| unknown [Zea mays]
gi|413920135|gb|AFW60067.1| hypothetical protein ZEAMMB73_533261 [Zea mays]
Length = 463
Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/291 (83%), Positives = 266/291 (91%), Gaps = 4/291 (1%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPI+MSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC L INDLDAGAGRMGGTT
Sbjct: 176 MGINPIVMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCVLFINDLDAGAGRMGGTT 235
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+
Sbjct: 236 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMD 295
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDR+GVCKGIFR+D V D+D+V+LVD FPGQSIDFFGALRARVYDDEVR+W+
Sbjct: 296 KFYWAPTREDRVGVCKGIFRSDGVPDEDVVRLVDAFPGQSIDFFGALRARVYDDEVRRWV 355
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ GV +I + LVNSKE PTFEQPRMT++KL+EYG M+V+EQENVKRVQLADKYLSEAA
Sbjct: 356 AETGVENIARRLVNSKEGPPTFEQPRMTLDKLMEYGRMLVEEQENVKRVQLADKYLSEAA 415
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 291
LG+AN+D + YGKAAQ + VPVPEGCTDP A NFDPTARSDDGSC Y
Sbjct: 416 LGDANDD----DDLYGKAAQHVRVPVPEGCTDPKAGNFDPTARSDDGSCVY 462
>gi|407911668|gb|AFU50382.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform a [Ipomoea batatas]
Length = 484
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/293 (82%), Positives = 267/293 (91%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MC L INDLDAGAGRMGGTT
Sbjct: 192 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCVLFINDLDAGAGRMGGTT 251
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 252 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 311
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D V D+ +VKLVDTFPGQSIDFFGALRARVYDDEVRK+I
Sbjct: 312 KFYWAPTREDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFI 371
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ +GV ++ + L+NS++ P F+QP+MT+EKLL+YG M+VQEQENVKRVQLADKYL EAA
Sbjct: 372 ASIGVDAVNERLLNSRDGPPKFDQPKMTIEKLLQYGYMLVQEQENVKRVQLADKYLKEAA 431
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+ANEDAI++GNFYG+ AQ N+ VPEGCTDP A NFDPTARSDDG+C Y +
Sbjct: 432 LGDANEDAIKNGNFYGQGAQSGNLKVPEGCTDPQASNFDPTARSDDGTCTYQV 484
>gi|407911670|gb|AFU50383.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform b [Ipomoea batatas]
Length = 484
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/293 (82%), Positives = 267/293 (91%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MC L INDLDAGAGRMGGTT
Sbjct: 192 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCVLFINDLDAGAGRMGGTT 251
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 252 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 311
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D V D+ +VKLVDTFPGQSIDFFGALRARVYDDEVRK+I
Sbjct: 312 KFYWAPTREDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFI 371
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ +GV ++ + L+NS++ P F+QP+MT+EKLL+YG M+VQEQENVKRVQLADKYL EAA
Sbjct: 372 ASIGVDAVNERLLNSRDGPPKFDQPKMTIEKLLQYGYMLVQEQENVKRVQLADKYLKEAA 431
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+ANEDAI++GNFYG+ AQ N+ VPEGCTDP A NFDPTARSDDG+C Y +
Sbjct: 432 LGDANEDAIKNGNFYGQGAQSGNLKVPEGCTDPQASNFDPTARSDDGTCTYQV 484
>gi|167999775|ref|XP_001752592.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696123|gb|EDQ82463.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 477
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/292 (83%), Positives = 267/292 (91%), Gaps = 1/292 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGRMGGTT
Sbjct: 181 LGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTT 240
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPG+YNKE PRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 241 QYTVNNQMVNATLMNIADNPTNVQLPGVYNKETIPRVPIIVTGNDFSTLYAPLIRDGRME 300
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNV DDD+VKLVD FPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 301 KFYWAPTREDRIGVCKGIFRLDNVHDDDVVKLVDKFPGQSIDFFGALRARVYDDEVRKWI 360
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
VG+ +IG++LVNSK+ PTF++P MT+EKL+EYG+M+VQEQ+NVKRVQLA++YLS A
Sbjct: 361 GKVGIENIGRNLVNSKDGPPTFQKPAMTIEKLMEYGDMLVQEQQNVKRVQLAEEYLSSDA 420
Query: 241 LGEANEDAIQSGNFY-GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 291
LG+AN DAI+ G FY G AAQ M++ VPEGCTDP AENFDPTARSDDG+C Y
Sbjct: 421 LGDANADAIKQGTFYGGNAAQHMDLKVPEGCTDPNAENFDPTARSDDGTCVY 472
>gi|407911664|gb|AFU50380.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform [Ipomoea batatas]
gi|407911672|gb|AFU50384.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform c [Ipomoea batatas]
Length = 484
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/293 (82%), Positives = 267/293 (91%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MC L INDLDAGAGRMGGTT
Sbjct: 192 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCVLFINDLDAGAGRMGGTT 251
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 252 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 311
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D V D+ +VKLVDTFPGQSIDFFGALRARVYDDEVRK+I
Sbjct: 312 KFYWAPTREDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFI 371
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ +GV ++ + L+NS++ P F+QP+MT+EKLL+YG M+VQEQENVKRVQLADKYL EAA
Sbjct: 372 ASIGVDAVNERLLNSRDGPPKFDQPKMTIEKLLQYGYMLVQEQENVKRVQLADKYLKEAA 431
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+ANEDAI++GNFYG+ AQ N+ VPEGCTDP A NFDPTARSDDG+C Y +
Sbjct: 432 LGDANEDAIKNGNFYGQGAQSGNLKVPEGCTDPQASNFDPTARSDDGTCTYQV 484
>gi|427542680|gb|AFY63117.1| alpha-form Rubisco activase [Zea mays]
Length = 463
Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/291 (83%), Positives = 265/291 (91%), Gaps = 4/291 (1%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPI+MSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC L INDL AGAGRMGGTT
Sbjct: 176 MGINPIVMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCVLFINDLYAGAGRMGGTT 235
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+
Sbjct: 236 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMD 295
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDR+GVCKGIFR+D V D+D+V+LVD FPGQSIDFFGALRARVYDDEVR+W+
Sbjct: 296 KFYWAPTREDRVGVCKGIFRSDGVPDEDVVRLVDAFPGQSIDFFGALRARVYDDEVRRWV 355
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ GV +I + LVNSKE PTFEQPRMT++KL+EYG M+V+EQENVKRVQLADKYLSEAA
Sbjct: 356 AETGVENIARRLVNSKEGPPTFEQPRMTLDKLMEYGRMLVEEQENVKRVQLADKYLSEAA 415
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 291
LG+AN+D + YGKAAQ + VPVPEGCTDP A NFDPTARSDDGSC Y
Sbjct: 416 LGDANDD----DDLYGKAAQHVRVPVPEGCTDPKAGNFDPTARSDDGSCVY 462
>gi|170129|gb|AAA34038.1| rubisco activase precursor [Spinacia oleracea]
Length = 472
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 236/293 (80%), Positives = 265/293 (90%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTT
Sbjct: 180 LGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTT 239
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATL+NIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 240 QYTVNNQMVNATLLNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRME 299
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIF+ D V + +VKLVD FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 300 KFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYDDEVRKWV 359
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ VGV ++GK LVNSK+ P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AA
Sbjct: 360 NSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAA 419
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DAI G F+GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct: 420 LGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472
>gi|12643998|sp|P10871.2|RCA_SPIOL RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|4261546|gb|AAD13840.1|S45033_1 ribulosebisphosphate carboxylase/oxygenase activase [Spinacia
oleracea]
Length = 472
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 236/293 (80%), Positives = 264/293 (90%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTT
Sbjct: 180 LGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTT 239
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 240 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRME 299
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIF+ D V + +VKLVD FPGQSIDFFGALRARVY DEVRKW+
Sbjct: 300 KFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWV 359
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ VGV ++GK LVNSK+ P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AA
Sbjct: 360 NSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAA 419
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DAI G F+GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct: 420 LGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472
>gi|302780018|ref|XP_002971784.1| hypothetical protein SELMODRAFT_95817 [Selaginella moellendorffii]
gi|300160916|gb|EFJ27533.1| hypothetical protein SELMODRAFT_95817 [Selaginella moellendorffii]
Length = 451
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/292 (83%), Positives = 264/292 (90%), Gaps = 1/292 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
+GINPI MSAGELESGNAGEPAKLIRQRYREAADIIKK G+MC L INDLDAGAGRMGGT
Sbjct: 124 LGINPIAMSAGELESGNAGEPAKLIRQRYREAADIIKKKGQMCVLFINDLDAGAGRMGGT 183
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVNNQMVNATLMNIADNPT VQLPG+Y KEE PRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 184 TQYTVNNQMVNATLMNIADNPTNVQLPGIYTKEELPRVPIIVTGNDFSTLYAPLIRDGRM 243
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYWAPTREDRIGVCKGIFR D+V D+DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 244 EKFYWAPTREDRIGVCKGIFRTDDVPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 303
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I+ VGV +IG LVNSK+ PTF +P MT++KLLEYGNM+VQEQENVKR LADKY+ +
Sbjct: 304 ITQVGVENIGPKLVNSKDGPPTFPKPPMTIDKLLEYGNMLVQEQENVKRYHLADKYMKGS 363
Query: 240 ALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 291
+LG+ANED + FYGKAAQQ+N+PVPEGCTDP A NFDPTARSDDG+C+Y
Sbjct: 364 SLGDANEDEREKDTFYGKAAQQINLPVPEGCTDPNAANFDPTARSDDGTCEY 415
>gi|302760819|ref|XP_002963832.1| hypothetical protein SELMODRAFT_79425 [Selaginella moellendorffii]
gi|300169100|gb|EFJ35703.1| hypothetical protein SELMODRAFT_79425 [Selaginella moellendorffii]
Length = 451
Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/292 (82%), Positives = 264/292 (90%), Gaps = 1/292 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
+GINPI MSAGELESGNAGEPAKLIRQRYREAADIIKK G+MC L INDLDAGAGRMGGT
Sbjct: 124 LGINPIAMSAGELESGNAGEPAKLIRQRYREAADIIKKKGQMCVLFINDLDAGAGRMGGT 183
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVNNQMVNATLMNIADNPT VQLPG+Y KEE PRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 184 TQYTVNNQMVNATLMNIADNPTNVQLPGIYTKEELPRVPIIVTGNDFSTLYAPLIRDGRM 243
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYWAPTREDRIGVCKGIFR+D V D+DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 244 EKFYWAPTREDRIGVCKGIFRSDEVPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 303
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I+ VGV +IG LVNSK+ PTF +P MT++KLLEYGNM+V+EQENVKR LADKY+ +
Sbjct: 304 ITQVGVENIGPKLVNSKDGPPTFPKPPMTIDKLLEYGNMLVKEQENVKRYHLADKYMKGS 363
Query: 240 ALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 291
+LG+ANED + FYGKAAQQ+N+PVPEGCTDP A NFDPTARSDDG+C+Y
Sbjct: 364 SLGDANEDEREKDTFYGKAAQQINLPVPEGCTDPNAANFDPTARSDDGTCEY 415
>gi|242072105|ref|XP_002451329.1| hypothetical protein SORBIDRAFT_05g027880 [Sorghum bicolor]
gi|241937172|gb|EES10317.1| hypothetical protein SORBIDRAFT_05g027880 [Sorghum bicolor]
Length = 473
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/293 (81%), Positives = 262/293 (89%), Gaps = 9/293 (3%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPI+MSAGELESGNAGEPAKLIRQRYREAAD+I KGKM CL INDLDAGAGRMGGTT
Sbjct: 187 MGINPIVMSAGELESGNAGEPAKLIRQRYREAADLISKGKMSCLFINDLDAGAGRMGGTT 246
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMY+K +NPRVPIIVTGNDFSTLYAPLIRDGRM+
Sbjct: 247 QYTVNNQMVNATLMNIADNPTNVQLPGMYSKVDNPRVPIIVTGNDFSTLYAPLIRDGRMD 306
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVCKGIFR D V D+ +V+LVD FPGQSIDFFGALRARVYDDEVR+W+
Sbjct: 307 KFYWAPTRDDRIGVCKGIFRTDGVPDEHVVQLVDAFPGQSIDFFGALRARVYDDEVRRWV 366
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ GV +I + LVNSKEA PTFEQPRMT++KL+EYG M+ +EQENVKRVQLADKYL+EAA
Sbjct: 367 AETGVENIARRLVNSKEAPPTFEQPRMTLDKLMEYGRMLEEEQENVKRVQLADKYLTEAA 426
Query: 241 LGEANEDAIQSGNFYGKAAQQMN--VPVPEGCTDPTAENFDPTARSDDGSCQY 291
LG+AN+ FYGKAAQQ++ VPVPEGCTDP A NFDP ARSDDGSC Y
Sbjct: 427 LGDAND-------FYGKAAQQVHVPVPVPEGCTDPRAGNFDPVARSDDGSCVY 472
>gi|224140291|ref|XP_002323516.1| predicted protein [Populus trichocarpa]
gi|222868146|gb|EEF05277.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 244/303 (80%), Positives = 264/303 (87%), Gaps = 18/303 (5%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
MGINP++MSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCL INDLDAGAGR GGT
Sbjct: 175 MGINPVVMSAGELESGNAGEPAKLIRQRYREAADIIKKRGKMCCLFINDLDAGAGRFGGT 234
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 235 TQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 294
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYWAPTREDRIGVC GIF +DNV +DIVKLV+TF GQSIDFFGALRAR YDDEVRKW
Sbjct: 295 EKFYWAPTREDRIGVCTGIFGSDNVPREDIVKLVNTFHGQSIDFFGALRARAYDDEVRKW 354
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
ISGVGV ++GK LVNSKE P EQP+MT+EKLLEYGNM+V EQENVKRV+L+DKYL EA
Sbjct: 355 ISGVGVENVGKRLVNSKEGPPILEQPKMTLEKLLEYGNMLVLEQENVKRVRLSDKYLKEA 414
Query: 240 ALGEANEDAIQSGNFY-------------GKAAQQMNVPVPEGCTDPTAENFDPTARSDD 286
ALG+ANEDA+++G+FY KAAQQ+N+PVPE CT+ AE TARSDD
Sbjct: 415 ALGDANEDAMKNGSFYEEIIKLLYNFLDTSKAAQQVNLPVPEDCTNSLAE----TARSDD 470
Query: 287 GSC 289
GSC
Sbjct: 471 GSC 473
>gi|410927436|gb|AFV93497.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha1, partial [Gossypium barbadense]
Length = 371
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/262 (90%), Positives = 247/262 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGRMGGTT
Sbjct: 110 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTT 169
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 170 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 229
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVCKGIFR D V D+DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 230 KFYWAPTRDDRIGVCKGIFRTDGVRDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 289
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S VGV S+GK LVNS+E PTFEQP+MT+EKLLEYGNM+V EQENVKRVQLADKYLSEAA
Sbjct: 290 SEVGVASVGKKLVNSREGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAA 349
Query: 241 LGEANEDAIQSGNFYGKAAQQM 262
LGEANED+I G FYGKAAQQ+
Sbjct: 350 LGEANEDSINRGTFYGKAAQQV 371
>gi|115334979|gb|ABI94077.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase small protein isoform [Acer rubrum]
Length = 437
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 233/256 (91%), Positives = 248/256 (96%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR+DNVAD++++KLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 302 KFYWAPTREDRIGVCKGIFRSDNVADNELIKLVDTFPGQSIDFFGALRARVYDDEVRKWI 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SG+GV SIGK+LVNSK PTFEQP+MT++KLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 362 SGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLSEAA 421
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN+DAI+ G+FYG
Sbjct: 422 LGDANDDAIKRGSFYG 437
>gi|115334975|gb|ABI94075.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase small protein isoform [Acer rubrum]
Length = 437
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 233/256 (91%), Positives = 247/256 (96%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR+DNVAD +++KLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 302 KFYWAPTREDRIGVCKGIFRSDNVADGELIKLVDTFPGQSIDFFGALRARVYDDEVRKWI 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SG+GV SIGK+LVNSK PTFEQP+MT++KLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 362 SGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLSEAA 421
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN+DAI+ G+FYG
Sbjct: 422 LGDANDDAIKRGSFYG 437
>gi|16471|emb|CAA32429.1| unnamed protein product [Arabidopsis thaliana]
Length = 473
Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/293 (80%), Positives = 253/293 (86%), Gaps = 1/293 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGE KLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEVRKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLY PLI DGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYGPLILDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KF PTREDRIGV GIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK++
Sbjct: 302 KFLTGPTREDRIGVW-GIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFV 360
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GV IGK LVNS+E P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AA
Sbjct: 361 ESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAA 420
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN DAI G FYGK A ++N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct: 421 LGDANADAIGRGTFYGKGAHEVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 473
>gi|410927466|gb|AFV93498.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha 2, partial [Gossypium barbadense]
Length = 371
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/262 (89%), Positives = 246/262 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGRMGGTT
Sbjct: 110 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTT 169
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 170 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 229
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR D + D+DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 230 KFYWAPTRDDRVGVCKGIFRTDGIPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 289
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S VGV +GK LVNS++ PTFEQP+MT+EKLLEYGNM+V EQENVKRVQLADKYLSEAA
Sbjct: 290 SDVGVAGVGKKLVNSRDGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAA 349
Query: 241 LGEANEDAIQSGNFYGKAAQQM 262
LGEANED+I G FYGKAAQQ+
Sbjct: 350 LGEANEDSINRGTFYGKAAQQV 371
>gi|359478916|ref|XP_003632187.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 2 [Vitis vinifera]
Length = 440
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/257 (90%), Positives = 244/257 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAP REDRIGVCKGIFR+DNV DDDIVK+VDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 302 KFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWI 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV IGK LVNSKE PTFEQP+MT+EKLLEYGNM+V EQENVKRVQLADKYLSEAA
Sbjct: 362 SGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSEAA 421
Query: 241 LGEANEDAIQSGNFYGK 257
LG+AN D+I+ G FYG+
Sbjct: 422 LGDANVDSIERGTFYGQ 438
>gi|154259484|gb|ABS72022.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Olea europaea]
Length = 261
Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/260 (88%), Positives = 246/260 (94%)
Query: 30 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 89
REAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMY
Sbjct: 1 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 60
Query: 90 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDI 149
NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D+V D+ +
Sbjct: 61 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDDVPDEHV 120
Query: 150 VKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTM 209
VKLVD+FPGQSIDFFGALRARVYDDEVRKWI GVGV +IGK LVNS+E PTF+QP+M++
Sbjct: 121 VKLVDSFPGQSIDFFGALRARVYDDEVRKWIGGVGVDNIGKKLVNSREGPPTFDQPKMSL 180
Query: 210 EKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEG 269
EKLLEYGNM+VQEQENVKRVQLAD+YLS AALG+AN+DA+QSG+FYGKAAQQ+ VPVPEG
Sbjct: 181 EKLLEYGNMLVQEQENVKRVQLADQYLSSAALGDANKDAMQSGSFYGKAAQQVGVPVPEG 240
Query: 270 CTDPTAENFDPTARSDDGSC 289
CTDP A NFDPTARSDDGSC
Sbjct: 241 CTDPNASNFDPTARSDDGSC 260
>gi|3914605|sp|Q40281.1|RCA_MALDO RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|415852|emb|CAA79857.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Malus x
domestica]
Length = 437
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/256 (90%), Positives = 243/256 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
M I+PIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMC L INDLDAGAGR+GGTT
Sbjct: 182 MRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 302 KFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GVGV SIGK LVNSKE PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 362 TGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAA 421
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN DA+ +G FYG
Sbjct: 422 LGDANSDAMNTGTFYG 437
>gi|410927500|gb|AFV93501.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha1, partial [Gossypium barbadense]
Length = 344
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/255 (90%), Positives = 240/255 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGRMGGTT
Sbjct: 90 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTT 149
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 150 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 209
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVCKGIFR D V D+DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 210 KFYWAPTRDDRIGVCKGIFRTDGVRDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 269
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S VGV S+GK LVNS+E PTFEQP+MT+EKLLEYGNM+V EQENVKRVQLADKYLSEAA
Sbjct: 270 SEVGVASVGKKLVNSREGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAA 329
Query: 241 LGEANEDAIQSGNFY 255
LGEANED+I G FY
Sbjct: 330 LGEANEDSINRGTFY 344
>gi|356569334|ref|XP_003552857.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 431
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/255 (89%), Positives = 239/255 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC L INDLDAGAGR+GGTT
Sbjct: 175 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAGAGRLGGTT 234
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 235 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 294
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR D + + DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 295 KFYWAPTREDRIGVCTGIFRTDGIPEQDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 354
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV S+GK LVNSK+ PTFEQP+MT+EKLL YGNM+VQEQENVKRVQLADKYL+EAA
Sbjct: 355 SGVGVDSVGKKLVNSKDGPPTFEQPKMTLEKLLLYGNMLVQEQENVKRVQLADKYLNEAA 414
Query: 241 LGEANEDAIQSGNFY 255
LG ANEDAIQ G F+
Sbjct: 415 LGNANEDAIQRGTFF 429
>gi|68565781|sp|Q7X999.1|RCA2_LARTR RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2;
AltName: Full=RuBisCO activase beta form; Flags:
Precursor
gi|32481067|gb|AAP83930.1| Rubisco activase beta form precursor [Larrea tridentata]
Length = 435
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 227/254 (89%), Positives = 242/254 (95%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 302 KFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWV 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S VGV +IGK LVNSKE PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAA
Sbjct: 362 SEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAA 421
Query: 241 LGEANEDAIQSGNF 254
LG+AN+DAI+ G F
Sbjct: 422 LGDANQDAIKRGTF 435
>gi|255635315|gb|ACU18011.1| unknown [Glycine max]
gi|290766487|gb|ADD60246.1| beta-form rubisco activase [Glycine max]
gi|290766491|gb|ADD60248.1| beta-form rubisco activase [Glycine max]
Length = 443
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/255 (89%), Positives = 239/255 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC L INDLDAGAGR+GGTT
Sbjct: 187 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAGAGRLGGTT 246
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 247 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 306
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR D + + DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 307 KFYWAPTREDRIGVCTGIFRTDGIPEQDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 366
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV S+GK LVNSK+ PTFEQP+MT+EKLL YGNM+VQEQENVKRVQLADKYL+EAA
Sbjct: 367 SGVGVDSVGKKLVNSKDGPPTFEQPKMTLEKLLLYGNMLVQEQENVKRVQLADKYLNEAA 426
Query: 241 LGEANEDAIQSGNFY 255
LG ANEDAIQ G F+
Sbjct: 427 LGNANEDAIQRGTFF 441
>gi|225449432|ref|XP_002282979.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic [Vitis vinifera]
Length = 438
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 225/255 (88%), Positives = 243/255 (95%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTT
Sbjct: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGTT 242
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP+IVTGNDFSTLYAPLIRDGRME
Sbjct: 243 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPVIVTGNDFSTLYAPLIRDGRME 302
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR DNV +DIVKLVDTFPGQSIDFFGALRARVYDD VR WI
Sbjct: 303 KFYWAPTREDRIGVCTGIFRTDNVPVEDIVKLVDTFPGQSIDFFGALRARVYDDMVRDWI 362
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+G+GV ++GK LVNSKE P+FEQP+MT+EKLLEYG+M+VQEQENVKRVQLADKYL+EAA
Sbjct: 363 AGIGVDTVGKRLVNSKEGPPSFEQPKMTLEKLLEYGSMLVQEQENVKRVQLADKYLNEAA 422
Query: 241 LGEANEDAIQSGNFY 255
LG+ANEDAI+SG+F+
Sbjct: 423 LGDANEDAIKSGSFF 437
>gi|449459892|ref|XP_004147680.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Cucumis sativus]
Length = 443
Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/254 (90%), Positives = 237/254 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM CL INDLDAGAGR+GGTT
Sbjct: 190 MGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMSCLFINDLDAGAGRLGGTT 249
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 250 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 309
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 310 KFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWV 369
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GVGV SIGK LVNSKE P FEQP M++EKLLEYG M+VQEQENVKRVQLA+ YL+EAA
Sbjct: 370 TGVGVQSIGKKLVNSKEPPPKFEQPTMSLEKLLEYGGMLVQEQENVKRVQLAETYLNEAA 429
Query: 241 LGEANEDAIQSGNF 254
LG ANEDAI G F
Sbjct: 430 LGNANEDAITRGAF 443
>gi|13430338|gb|AAK25801.1|AF338240_1 rubisco activase [Zantedeschia aethiopica]
Length = 435
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 223/256 (87%), Positives = 243/256 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 180 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTT 239
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+ENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 240 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLIRDGRME 299
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVC GIFR+DNV +D++KLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 300 KFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSIDFFGALRARVYDDEVRKWI 359
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ +GV +GK LVNS E PTF QP+MT++KLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 360 AEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSEAA 419
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN+DAI++G+FYG
Sbjct: 420 LGDANQDAIKTGSFYG 435
>gi|410927512|gb|AFV93502.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha 2, partial [Gossypium barbadense]
Length = 344
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/255 (89%), Positives = 239/255 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGRMGGTT
Sbjct: 90 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTT 149
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 150 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 209
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR D + D+DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 210 KFYWAPTRDDRVGVCKGIFRTDGIPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 269
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S VGV +GK LVNS++ PTFEQP+MT+EKLLEYGNM+V EQENVKRVQLADKYLSEAA
Sbjct: 270 SDVGVAGVGKKLVNSRDGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAA 329
Query: 241 LGEANEDAIQSGNFY 255
LGEANED+I G FY
Sbjct: 330 LGEANEDSINRGTFY 344
>gi|12620881|gb|AAG61120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1
[Gossypium hirsutum]
Length = 438
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/254 (90%), Positives = 237/254 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 185 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 244
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 245 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 304
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR DNV DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 305 KFYWAPTREDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 364
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
VGV S+GK LVNS+E P+FEQP MT+EKLLEYGNM+V EQENVKRVQLADKYLSEAA
Sbjct: 365 GEVGVNSVGKKLVNSREGPPSFEQPTMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAA 424
Query: 241 LGEANEDAIQSGNF 254
LG AN+DAI+ G F
Sbjct: 425 LGNANDDAIKRGAF 438
>gi|449503259|ref|XP_004161913.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplastic-like
[Cucumis sativus]
Length = 443
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/254 (89%), Positives = 236/254 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM CL INDLDAGAGR+GGTT
Sbjct: 190 MGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMSCLFINDLDAGAGRLGGTT 249
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 250 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 309
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 310 KFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWV 369
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GVGV SIGK LVNSKE P FEQP M++ KLLEYG M+VQEQENVKRVQLA+ YL+EAA
Sbjct: 370 TGVGVQSIGKKLVNSKEPPPKFEQPTMSLXKLLEYGGMLVQEQENVKRVQLAETYLNEAA 429
Query: 241 LGEANEDAIQSGNF 254
LG ANEDAI G F
Sbjct: 430 LGNANEDAITRGAF 443
>gi|118486993|gb|ABK95328.1| unknown [Populus trichocarpa]
Length = 361
Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/257 (89%), Positives = 243/257 (94%), Gaps = 1/257 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
MGI+PIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCL INDLDAGAGR+GGT
Sbjct: 105 MGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLGGT 164
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVP+IVTGNDFSTLYAPLIRDGRM
Sbjct: 165 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPVIVTGNDFSTLYAPLIRDGRM 224
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYWAPTREDRIGVC GIF+ DNV +DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 225 EKFYWAPTREDRIGVCIGIFKTDNVPEDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 284
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
+SGVGV SIGK LVNS+E PTFEQP MT+EKL EYGNM+V+EQENVKRVQLADKYLS+A
Sbjct: 285 VSGVGVESIGKKLVNSREGPPTFEQPPMTVEKLFEYGNMLVKEQENVKRVQLADKYLSDA 344
Query: 240 ALGEANEDAIQSGNFYG 256
ALGEAN+DAI+ G FYG
Sbjct: 345 ALGEANQDAIERGTFYG 361
>gi|8918361|dbj|BAA97584.1| RuBisCO activase small isoform precursor [Oryza sativa]
gi|62733169|gb|AAX95286.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
gi|77552726|gb|ABA95523.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|215694316|dbj|BAG89309.1| unnamed protein product [Oryza sativa Japonica Group]
gi|347737190|gb|AEP20546.1| ribulose bisphosphate carboxylase activase small isoform [Oryza
sativa Japonica Group]
Length = 433
Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust.
Identities = 223/258 (86%), Positives = 244/258 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 173 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 232
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 233 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 292
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 293 KFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWV 352
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAA
Sbjct: 353 SDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAA 412
Query: 241 LGEANEDAIQSGNFYGKA 258
LG+AN DA+++G+FYG A
Sbjct: 413 LGDANSDAMKTGSFYGSA 430
>gi|7960277|gb|AAF71272.1|AF251264_1 ribulose bisphosphate carboxylase activase B [Triticum aestivum]
Length = 432
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/257 (87%), Positives = 241/257 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 176 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 235
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQ PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 236 QYTVNNQMVNATLMNIADAPTNVQFPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 295
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 296 KFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWV 355
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GV +I K LVNS+E PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAA
Sbjct: 356 GEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAA 415
Query: 241 LGEANEDAIQSGNFYGK 257
LG+AN+DA+ +G FYGK
Sbjct: 416 LGQANDDAMATGAFYGK 432
>gi|358249078|ref|NP_001240245.1| ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
gi|290766485|gb|ADD60245.1| rubisco activase [Glycine max]
Length = 443
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/255 (87%), Positives = 238/255 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC L INDLDAGAGR+GGTT
Sbjct: 187 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCALFINDLDAGAGRLGGTT 246
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 247 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 306
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVC GIFR D++ + D+VK+VDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 307 KFYWAPTRDDRIGVCTGIFRTDSIPEQDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWI 366
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV IGK LVNSK+ PTFEQP+MT+EKLL YGNM+VQEQENVKRVQLADKYL+EAA
Sbjct: 367 SGVGVDGIGKKLVNSKDGPPTFEQPKMTLEKLLTYGNMLVQEQENVKRVQLADKYLNEAA 426
Query: 241 LGEANEDAIQSGNFY 255
LG ANEDAI G F+
Sbjct: 427 LGNANEDAINRGTFF 441
>gi|224101023|ref|XP_002312110.1| predicted protein [Populus trichocarpa]
gi|222851930|gb|EEE89477.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/255 (89%), Positives = 241/255 (94%), Gaps = 1/255 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
MGI+PIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCL INDLDAGAGR+GGT
Sbjct: 184 MGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLGGT 243
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVP+IVTGNDFSTLYAPLIRDGRM
Sbjct: 244 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPVIVTGNDFSTLYAPLIRDGRM 303
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYWAPTREDRIGVC GIF+ DNV +DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 304 EKFYWAPTREDRIGVCIGIFKTDNVPEDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 363
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
+SGVGV SIGK LVNS+E PTFEQP MT+EKL EYGNM+V+EQENVKRVQLADKYLS+A
Sbjct: 364 VSGVGVESIGKKLVNSREGPPTFEQPPMTVEKLFEYGNMLVKEQENVKRVQLADKYLSDA 423
Query: 240 ALGEANEDAIQSGNF 254
ALGEAN+DAI+ G F
Sbjct: 424 ALGEANQDAIERGTF 438
>gi|13430334|gb|AAK25799.1|AF338238_1 rubisco activase [Zantedeschia aethiopica]
Length = 334
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/256 (87%), Positives = 243/256 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 79 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTT 138
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+ENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 139 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLIRDGRME 198
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVC GIFR+DNV +D++KLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 199 KFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSIDFFGALRARVYDDEVRKWI 258
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ +GV +GK LVNS E PTF QP+MT++KLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 259 AEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSEAA 318
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN+DAI++G+FYG
Sbjct: 319 LGDANQDAIKTGSFYG 334
>gi|21950712|gb|AAM78591.1| rubisco activase [Chenopodium quinoa]
Length = 438
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/256 (87%), Positives = 238/256 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII KGKMC L INDLDAGAGRMGGTT
Sbjct: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIAKGKMCALFINDLDAGAGRMGGTT 242
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 243 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 302
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGV GIFR DNV +D +VKLVDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 303 KFYWAPTREDRIGVATGIFRTDNVPEDHVVKLVDTFPGQSIDFFGALRARVYDDEVRKWV 362
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S VG+ ++GK LVNS++ P FEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 363 SEVGIDAVGKKLVNSRDGPPVFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEAA 422
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN+DAI SG F+G
Sbjct: 423 LGDANKDAIASGAFFG 438
>gi|108864713|gb|ABG22614.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 428
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 222/256 (86%), Positives = 243/256 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 173 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 232
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 233 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 292
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 293 KFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWV 352
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAA
Sbjct: 353 SDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAA 412
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN DA+++G+FYG
Sbjct: 413 LGDANSDAMKTGSFYG 428
>gi|108864712|gb|ABG22613.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 348
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/258 (86%), Positives = 244/258 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 88 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 147
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 148 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 207
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 208 KFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWV 267
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAA
Sbjct: 268 SDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAA 327
Query: 241 LGEANEDAIQSGNFYGKA 258
LG+AN DA+++G+FYG A
Sbjct: 328 LGDANSDAMKTGSFYGSA 345
>gi|62733168|gb|AAX95285.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
gi|108864711|gb|ABG22612.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 357
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/258 (86%), Positives = 244/258 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 97 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 156
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 157 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 216
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 217 KFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWV 276
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAA
Sbjct: 277 SDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAA 336
Query: 241 LGEANEDAIQSGNFYGKA 258
LG+AN DA+++G+FYG A
Sbjct: 337 LGDANSDAMKTGSFYGSA 354
>gi|23320705|gb|AAN15946.1| rubisco activase, partial [Medicago sativa]
Length = 270
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/254 (88%), Positives = 239/254 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 17 MGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGGTT 76
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 77 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRME 136
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR+DN+A DDIVK+VDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 137 KFYWAPTREDRIGVCIGIFRHDNIAKDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWV 196
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVG+ +IGK LVNSKE P FEQP+MT+EKLLEYGNM+V EQENVKRVQLADKYL AA
Sbjct: 197 SGVGIETIGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVSEQENVKRVQLADKYLEGAA 256
Query: 241 LGEANEDAIQSGNF 254
LG+AN+DAI+ G F
Sbjct: 257 LGDANQDAIKEGKF 270
>gi|357155667|ref|XP_003577196.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic-like [Brachypodium distachyon]
Length = 440
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/258 (86%), Positives = 240/258 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D V D+ +V+LVD FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 302 KFYWAPTREDRIGVCKGIFRTDGVPDEAVVRLVDMFPGQSIDFFGALRARVYDDEVRKWV 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GV +I K LVNSKE P FEQP+MT+ KL+EYG+M+VQEQENVKRVQLADKYLSEAA
Sbjct: 362 GEIGVENISKRLVNSKEGPPKFEQPKMTISKLMEYGHMLVQEQENVKRVQLADKYLSEAA 421
Query: 241 LGEANEDAIQSGNFYGKA 258
LGEAN+DA+++G+FY KA
Sbjct: 422 LGEANDDAMKTGSFYAKA 439
>gi|297612474|ref|NP_001068555.2| Os11g0707000 [Oryza sativa Japonica Group]
gi|255680411|dbj|BAF28918.2| Os11g0707000 [Oryza sativa Japonica Group]
Length = 350
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/258 (86%), Positives = 244/258 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 90 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 149
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 150 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 209
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 210 KFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWV 269
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAA
Sbjct: 270 SDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAA 329
Query: 241 LGEANEDAIQSGNFYGKA 258
LG+AN DA+++G+FYG A
Sbjct: 330 LGDANSDAMKTGSFYGSA 347
>gi|10720249|sp|O98997.2|RCA_PHAAU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|8954287|gb|AAD20019.2| rubisco activase [Vigna radiata]
Length = 439
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 222/255 (87%), Positives = 240/255 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDLDAGAGR+GGTT
Sbjct: 184 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTT 243
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 244 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRME 303
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 304 KFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWI 363
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV + GK LVNSKE PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAA
Sbjct: 364 SGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAA 423
Query: 241 LGEANEDAIQSGNFY 255
LG ANEDAI+SG+F+
Sbjct: 424 LGNANEDAIKSGSFF 438
>gi|149392725|gb|ABR26165.1| ribulose bisphosphate carboxylase/oxygenase activase [Oryza sativa
Indica Group]
Length = 273
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/258 (86%), Positives = 244/258 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 13 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 72
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 73 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 132
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 133 KFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWV 192
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAA
Sbjct: 193 SDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAA 252
Query: 241 LGEANEDAIQSGNFYGKA 258
LG+AN DA+++G+FYG A
Sbjct: 253 LGDANSDAMKTGSFYGSA 270
>gi|62733297|gb|AAX95414.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
Length = 466
Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust.
Identities = 222/256 (86%), Positives = 243/256 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 211 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 270
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 271 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 330
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 331 KFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWV 390
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAA
Sbjct: 391 SDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAA 450
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN DA+++G+FYG
Sbjct: 451 LGDANSDAMKTGSFYG 466
>gi|449450762|ref|XP_004143131.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
gi|449496654|ref|XP_004160190.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
gi|239837354|gb|ACS29559.1| chloroplast rubisco activase [Cucumis sativus]
Length = 611
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/250 (88%), Positives = 236/250 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGR+GGTT
Sbjct: 179 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTT 238
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+
Sbjct: 239 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMD 298
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIG+C GIFR D V +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 299 KFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWA 358
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
GVGV IG++LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+LADKYL+EAA
Sbjct: 359 VGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKLADKYLNEAA 418
Query: 241 LGEANEDAIQ 250
LG+ANED +Q
Sbjct: 419 LGDANEDDVQ 428
>gi|118489408|gb|ABK96507.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 461
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/252 (89%), Positives = 239/252 (94%), Gaps = 1/252 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
MGI+PIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCL INDLDAGAGR+GGT
Sbjct: 184 MGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLGGT 243
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 244 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRM 303
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYWAPTR+DRIGVC GIF+ DNV DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 304 EKFYWAPTRDDRIGVCIGIFKTDNVPQDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 363
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
+SGVGV SIGK LVNS+E PTFEQP MT+EKL EYGNM+V+EQENVKRVQLADKYLS+A
Sbjct: 364 VSGVGVESIGKKLVNSREGPPTFEQPAMTVEKLFEYGNMLVKEQENVKRVQLADKYLSDA 423
Query: 240 ALGEANEDAIQS 251
ALGEAN+DAI+S
Sbjct: 424 ALGEANQDAIES 435
>gi|337263422|gb|AEI69347.1| chloroplast rubisco activase [Ophiopogon japonicus]
Length = 435
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 224/254 (88%), Positives = 235/254 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII KGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIAKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR DRIGVC GIF DNVA DIVKLVD FPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 302 KFYWAPTRSDRIGVCTGIFMTDNVAVQDIVKLVDAFPGQSIDFFGALRARVYDDEVRKWI 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S +GV +GK LVNS E APTFEQP+MT+EKL++YGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 362 SDIGVDKVGKRLVNSAEGAPTFEQPKMTLEKLMDYGNMLVQEQENVKRVQLADKYLSEAA 421
Query: 241 LGEANEDAIQSGNF 254
LG+AN DAI++G F
Sbjct: 422 LGDANVDAIKTGKF 435
>gi|383470439|gb|AFH35543.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Brassica oleracea]
Length = 438
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 224/256 (87%), Positives = 236/256 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 242
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 243 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRME 302
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNV D+DIV LVD FPGQSIDFFGALRARVYDDEVRK++
Sbjct: 303 KFYWAPTREDRIGVCKGIFRTDNVKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFV 362
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
G+GV IGK LVNS+E P FEQP MT+EKL+EYGNM+V EQENVKRVQLAD+YL+EAA
Sbjct: 363 EGLGVEKIGKRLVNSREGPPVFEQPAMTLEKLMEYGNMLVMEQENVKRVQLADQYLNEAA 422
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN DAI G FYG
Sbjct: 423 LGDANADAIGRGTFYG 438
>gi|158726716|gb|ABW80752.1| chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase
activase [Flaveria bidentis]
Length = 438
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 223/255 (87%), Positives = 237/255 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 180 MGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 239
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 240 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 299
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVC GIFR DNV +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 300 KFYWAPTRDDRIGVCIGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 359
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
VGV +IGK LVNS+E PTFEQP+MT++KLLEYG M+VQEQENVKRVQLAD YL AA
Sbjct: 360 GEVGVETIGKKLVNSREGPPTFEQPKMTIDKLLEYGYMLVQEQENVKRVQLADTYLDSAA 419
Query: 241 LGEANEDAIQSGNFY 255
LG+AN+DA+++G F+
Sbjct: 420 LGDANKDAMETGKFF 434
>gi|225580059|gb|ACN94267.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Solenostemon scutellarioides]
Length = 436
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/255 (87%), Positives = 238/255 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 180 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTT 239
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 240 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 299
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D V D+ +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 300 KFYWAPTREDRIGVCKGIFRTDGVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWV 359
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV +IG LVNS+E P FEQP+MT+EKLLEYG M+VQEQENVKRVQLADKYL +AA
Sbjct: 360 SGVGVENIGTRLVNSREGPPKFEQPKMTLEKLLEYGFMLVQEQENVKRVQLADKYLKDAA 419
Query: 241 LGEANEDAIQSGNFY 255
LG+AN+DAI+ G F+
Sbjct: 420 LGDANKDAIERGTFF 434
>gi|1778414|gb|AAC28134.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Oryza
sativa Japonica Group]
Length = 432
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/258 (86%), Positives = 243/258 (94%), Gaps = 1/258 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGN GEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 173 MGINPIMMSAGELESGN-GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 231
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 232 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 291
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 292 KFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWV 351
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAA
Sbjct: 352 SDTGVENIGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAA 411
Query: 241 LGEANEDAIQSGNFYGKA 258
LG+AN DA+++G+FYG A
Sbjct: 412 LGDANSDAMKTGSFYGSA 429
>gi|116283512|gb|AAH29790.1| Unknown (protein for MGC:35458) [Homo sapiens]
Length = 427
Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust.
Identities = 216/256 (84%), Positives = 242/256 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 172 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 231
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 232 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRME 291
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 292 KFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWV 351
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AA
Sbjct: 352 TSTGIENIGKKLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAA 411
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN+DA+++G FYG
Sbjct: 412 LGDANQDAMKTGTFYG 427
>gi|10720253|sp|Q42450.1|RCAB_HORVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
B, chloroplastic; Short=RA B; Short=RuBisCO activase B;
Flags: Precursor
gi|167093|gb|AAA62703.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare]
gi|167095|gb|AAA63162.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare
subsp. vulgare]
Length = 425
Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust.
Identities = 223/257 (86%), Positives = 241/257 (93%), Gaps = 1/257 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGN GEPAKLIRQRYREAADII KGKMCCL INDLDAGAGRMGGTT
Sbjct: 170 MGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTT 228
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 229 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 288
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 289 KFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWV 348
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GV +I K LVNS+E PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAA
Sbjct: 349 GEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAA 408
Query: 241 LGEANEDAIQSGNFYGK 257
LG+AN+DA+++G FYGK
Sbjct: 409 LGQANDDAMKTGAFYGK 425
>gi|32481063|gb|AAP83928.1| Rubisco activase beta form precursor [Deschampsia antarctica]
Length = 428
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 218/256 (85%), Positives = 242/256 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 173 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 232
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 233 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 292
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYD EVRKW+
Sbjct: 293 KFYWAPTREDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDVEVRKWV 352
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AA
Sbjct: 353 SSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAA 412
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN+DA+++G+FYG
Sbjct: 413 LGDANKDAMKTGSFYG 428
>gi|326494300|dbj|BAJ90419.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 216/256 (84%), Positives = 242/256 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 172 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 231
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 232 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRME 291
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 292 KFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWV 351
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AA
Sbjct: 352 GSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAA 411
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN+DA+++G+FYG
Sbjct: 412 LGDANQDAMKTGSFYG 427
>gi|313574196|dbj|BAJ41041.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase small
isoform [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 216/256 (84%), Positives = 242/256 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 172 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 231
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 232 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRME 291
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 292 KFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWV 351
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AA
Sbjct: 352 GSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAA 411
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN+DA+++G+FYG
Sbjct: 412 LGDANQDAMKTGSFYG 427
>gi|312281705|dbj|BAJ33718.1| unnamed protein product [Thellungiella halophila]
Length = 437
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/256 (86%), Positives = 235/256 (91%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK++
Sbjct: 302 KFYWAPTREDRIGVCKGIFRTDKINDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFV 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
G+GV IGK LVNS+E P FEQP MT+EKL+EYGNM+V EQENVKRVQLAD+YL+EAA
Sbjct: 362 EGLGVEKIGKRLVNSREGPPVFEQPEMTLEKLMEYGNMLVMEQENVKRVQLADQYLNEAA 421
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN DAI G FYG
Sbjct: 422 LGDANADAIDRGTFYG 437
>gi|167096|gb|AAA63163.1| ribulose 1,5-bisphosphate carboxylase activase isoform 1 [Hordeum
vulgare subsp. vulgare]
Length = 427
Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust.
Identities = 215/256 (83%), Positives = 241/256 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 172 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 231
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 232 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRME 291
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 292 KFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWV 351
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AA
Sbjct: 352 GSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAA 411
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN+DA+++G+FYG
Sbjct: 412 LGDANQDAMKTGSFYG 427
>gi|168054092|ref|XP_001779467.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669152|gb|EDQ55745.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/256 (85%), Positives = 238/256 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GINPI+MSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC L INDLDAGAGRMGGTT
Sbjct: 147 LGINPIVMSAGELESGNAGEPAKLIRQRYREAADVIKKGKMCALFINDLDAGAGRMGGTT 206
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD+PT VQLPG+YNKEE PRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 207 QYTVNNQMVNATLMNIADSPTNVQLPGVYNKEEIPRVPIIVTGNDFSTLYAPLIRDGRME 266
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNV+DD++ KLVD+FPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 267 KFYWAPTREDRIGVCKGIFRLDNVSDDNVTKLVDSFPGQSIDFFGALRARVYDDEVRKWI 326
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S GV +IGK LVNSK+ PTFE+P MT+EKL+EYGNM+VQEQ+NVKRVQLAD+YLS AA
Sbjct: 327 SATGVDNIGKKLVNSKDGPPTFEKPAMTIEKLMEYGNMLVQEQQNVKRVQLADQYLSSAA 386
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN DAI G FYG
Sbjct: 387 LGDANADAISQGTFYG 402
>gi|162458161|ref|NP_001104921.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
precursor [Zea mays]
gi|29429152|sp|Q9ZT00.3|RCA_MAIZE RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|19855034|gb|AAC97932.3| ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor
[Zea mays]
gi|195620038|gb|ACG31849.1| ribulose bisphosphate carboxylase/oxygenase activase [Zea mays]
gi|313574198|dbj|BAJ41042.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase small
isoform [Zea mays]
gi|413920136|gb|AFW60068.1| ribulose bisphosphate carboxylase/oxygenase activase, Precursor
isoform 1 [Zea mays]
gi|413920137|gb|AFW60069.1| ribulose bisphosphate carboxylase/oxygenase activase, Precursor
isoform 2 [Zea mays]
Length = 433
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 217/255 (85%), Positives = 239/255 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKM CL INDLDAGAGRMGGTT
Sbjct: 178 MGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTT 237
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 238 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 297
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+
Sbjct: 298 KFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWV 357
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S GV +I + LVNSKE PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAA
Sbjct: 358 SETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAA 417
Query: 241 LGEANEDAIQSGNFY 255
LGEANEDA+++G+F+
Sbjct: 418 LGEANEDAMKTGSFF 432
>gi|10720248|sp|O64981.1|RCA_PHAVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|3033513|gb|AAC12868.1| rubisco activase [Phaseolus vulgaris]
Length = 441
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/255 (86%), Positives = 238/255 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKMC L INDLDAGAGR+GGTT
Sbjct: 186 MGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTT 245
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 246 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRME 305
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D V + DIV+LVD PGQSIDFFGALRARVYDDEVRKWI
Sbjct: 306 KFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWI 365
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV S+GK LVNSKE PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAA
Sbjct: 366 SGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAA 425
Query: 241 LGEANEDAIQSGNFY 255
LG ANEDAI+SG+F+
Sbjct: 426 LGNANEDAIKSGSFF 440
>gi|100615|pir||C23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A short
form precursor - barley
gi|167091|gb|AAA62702.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare
subsp. vulgare]
Length = 427
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 215/256 (83%), Positives = 240/256 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 172 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 231
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 232 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRME 291
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVCKGIF+ DNV D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 292 KFYWAPTRDDRIGVCKGIFQTDNVCDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWV 351
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AA
Sbjct: 352 GSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAA 411
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN+DA+++G+FYG
Sbjct: 412 LGDANQDAMKTGSFYG 427
>gi|116789461|gb|ABK25255.1| unknown [Picea sitchensis]
Length = 440
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 214/256 (83%), Positives = 240/256 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GINPIMMSAGELESG+AGEPAKL+R+RYREA+DI+KKGKMC L INDLDAGAGRMG TT
Sbjct: 185 LGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLDAGAGRMGSTT 244
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK++NPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 245 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRDGRME 304
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVC+GIFR DNV DD+V+LVDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 305 KFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWV 364
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+G G+ +IGK L+NSKE PTFE+P MT+EKLLEYGNM+V EQ+NVKRVQLADKY+SEAA
Sbjct: 365 AGTGIQNIGKKLINSKEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRVQLADKYMSEAA 424
Query: 241 LGEANEDAIQSGNFYG 256
LG+ANED+I+ G FYG
Sbjct: 425 LGDANEDSIKRGTFYG 440
>gi|12643757|sp|Q40460.1|RCA1_TOBAC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1;
Flags: Precursor
gi|1006835|gb|AAA78277.1| rubisco activase precursor [Nicotiana tabacum]
Length = 442
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/255 (85%), Positives = 235/255 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTT
Sbjct: 186 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTT 245
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 246 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 305
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR DNV +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 306 KFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWV 365
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SG G+ IG L+NS + PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAA
Sbjct: 366 SGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAA 425
Query: 241 LGEANEDAIQSGNFY 255
LG+AN DAI +G+F+
Sbjct: 426 LGDANADAINNGSFF 440
>gi|30687995|ref|NP_850320.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|166835|gb|AAA20203.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|15450671|gb|AAK96607.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
gi|23397139|gb|AAN31853.1| unknown protein [Arabidopsis thaliana]
gi|330254621|gb|AEC09715.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 446
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/261 (84%), Positives = 234/261 (89%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK++
Sbjct: 302 KFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFV 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GV IGK LVNS+E P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AA
Sbjct: 362 ESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQ 261
LG+AN DAI G FYGK ++
Sbjct: 422 LGDANADAIGRGTFYGKTEEK 442
>gi|30687999|ref|NP_850321.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|330254622|gb|AEC09716.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 441
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/257 (85%), Positives = 232/257 (90%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK++
Sbjct: 302 KFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFV 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GV IGK LVNS+E P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AA
Sbjct: 362 ESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAA 421
Query: 241 LGEANEDAIQSGNFYGK 257
LG+AN DAI G FYGK
Sbjct: 422 LGDANADAIGRGTFYGK 438
>gi|119855475|gb|ABM01871.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Morus alba var. multicaulis]
Length = 246
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/246 (88%), Positives = 235/246 (95%)
Query: 46 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 105
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGND
Sbjct: 1 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGND 60
Query: 106 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFG 165
FSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+D+V ++DIVK+VDTFPGQSIDFFG
Sbjct: 61 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRSDHVPEEDIVKIVDTFPGQSIDFFG 120
Query: 166 ALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQEN 225
ALRARVYDDEVRKWISGVGV +IGK LVNSKE PTF+QP+MT+EKLLEYGNM+VQEQEN
Sbjct: 121 ALRARVYDDEVRKWISGVGVETIGKKLVNSKEGPPTFDQPKMTVEKLLEYGNMLVQEQEN 180
Query: 226 VKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSD 285
VKRVQLADKYLSEAALG+AN+D+I+SG FYGKAAQQ+N+PVPEGCTDP A NFDPTARSD
Sbjct: 181 VKRVQLADKYLSEAALGDANQDSIKSGTFYGKAAQQINIPVPEGCTDPLAANFDPTARSD 240
Query: 286 DGSCQY 291
+GSC Y
Sbjct: 241 NGSCLY 246
>gi|12643758|sp|Q40565.1|RCA2_TOBAC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2;
Flags: Precursor
gi|19990|emb|CAA78703.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 439
Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/254 (85%), Positives = 236/254 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG +CCL INDLDAGAGRMGGTT
Sbjct: 186 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTT 245
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 246 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 305
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 306 KFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWV 365
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SG G+ +IG L+NS + PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAA
Sbjct: 366 SGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAA 425
Query: 241 LGEANEDAIQSGNF 254
LG+AN DAI +GNF
Sbjct: 426 LGDANADAINTGNF 439
>gi|223948607|gb|ACN28387.1| unknown [Zea mays]
Length = 383
Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust.
Identities = 217/255 (85%), Positives = 239/255 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKM CL INDLDAGAGRMGGTT
Sbjct: 128 MGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTT 187
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 188 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 247
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+
Sbjct: 248 KFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWV 307
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S GV +I + LVNSKE PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAA
Sbjct: 308 SETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAA 367
Query: 241 LGEANEDAIQSGNFY 255
LGEANEDA+++G+F+
Sbjct: 368 LGEANEDAMKTGSFF 382
>gi|445628|prf||1909374A RuBisCO activase
Length = 383
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/255 (85%), Positives = 235/255 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTT
Sbjct: 127 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTT 186
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 187 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 246
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR DNV +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 247 KFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWV 306
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SG G+ IG L+NS + PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAA
Sbjct: 307 SGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAA 366
Query: 241 LGEANEDAIQSGNFY 255
LG+AN DAI +G+F+
Sbjct: 367 LGDANADAINNGSFF 381
>gi|10720247|sp|O49074.1|RCA_SOLPN RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|2707330|gb|AAC15236.1| rubisco activase [Solanum pennellii]
Length = 459
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/252 (85%), Positives = 235/252 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTT
Sbjct: 181 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTT 240
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 241 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 300
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 301 KFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWV 360
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SG G+ IG+ L+NS++ PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAA
Sbjct: 361 SGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAA 420
Query: 241 LGEANEDAIQSG 252
LG+AN DAI +G
Sbjct: 421 LGDANADAINTG 432
>gi|308368980|gb|AAG22094.3| ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor
[Zea mays]
Length = 305
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 217/255 (85%), Positives = 239/255 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKM CL INDLDAGAGRMGGTT
Sbjct: 50 MGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTT 109
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 110 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 169
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+
Sbjct: 170 KFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWV 229
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S GV +I + LVNSKE PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAA
Sbjct: 230 SETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAA 289
Query: 241 LGEANEDAIQSGNFY 255
LGEANEDA+++G+F+
Sbjct: 290 LGEANEDAMKTGSFF 304
>gi|169930138|gb|ACB05667.1| chloroplast rubisco activase [Capsicum annuum]
Length = 439
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/254 (84%), Positives = 237/254 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTT
Sbjct: 186 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGTMCCLFINDLDAGAGRMGGTT 245
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 246 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENCRVPIIVTGNDFSTLYAPLIRDGRME 305
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNV D+ +VK+VD+FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 306 KFYWAPTREDRIGVCKGIFRTDNVPDEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWV 365
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SG G+ ++G+ L+NS++ PTFEQP+MT+EKLLEYGNM+V+EQENVKRVQLA+ YL EAA
Sbjct: 366 SGTGIEAVGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVKEQENVKRVQLAETYLKEAA 425
Query: 241 LGEANEDAIQSGNF 254
LG+AN DAI +G F
Sbjct: 426 LGDANADAINTGAF 439
>gi|224284512|gb|ACN39989.1| unknown [Picea sitchensis]
Length = 368
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/293 (74%), Positives = 246/293 (83%), Gaps = 27/293 (9%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GINPIMMSAGELESG+AGEPAKL+R+RYREA+DI+KKGKMC L INDLDAGAGRMG TT
Sbjct: 100 LGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLDAGAGRMGSTT 159
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK++NPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 160 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRDGRME 219
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVC+GIFR DNV DD+V+LVDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 220 KFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWV 279
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+G G+ +IGK L+NSKE PTFE+P MT+EKLLEYGNM+V EQ+NVKRVQL D
Sbjct: 280 AGTGIQNIGKKLINSKEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRVQLVD------- 332
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
+N+PVPEGCTDP A N+DPTARSD+GSC+Y
Sbjct: 333 --------------------NVNLPVPEGCTDPRAANYDPTARSDNGSCEYEF 365
>gi|168047151|ref|XP_001776035.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672693|gb|EDQ59227.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 217/255 (85%), Positives = 237/255 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GINPI+MSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC L INDLDAGAGRMGGTT
Sbjct: 182 LGINPIVMSAGELESGNAGEPAKLIRQRYREAADVIKKGKMCALFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD+PT VQLPG+YNKEE PRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADSPTNVQLPGVYNKEEIPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNV+DD++ KLVD FPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 302 KFYWAPTREDRIGVCKGIFRLDNVSDDNVTKLVDQFPGQSIDFFGALRARVYDDEVRKWI 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+G GV +IGK+LVNSK PTFE+P MT+EKL+EYG M+VQEQ+NVKRVQLA++YLS AA
Sbjct: 362 AGTGVENIGKNLVNSKNGPPTFEKPAMTIEKLMEYGEMLVQEQQNVKRVQLAEQYLSSAA 421
Query: 241 LGEANEDAIQSGNFY 255
LG+AN DAI+ G FY
Sbjct: 422 LGDANADAIKQGTFY 436
>gi|242072103|ref|XP_002451328.1| hypothetical protein SORBIDRAFT_05g027870 [Sorghum bicolor]
gi|241937171|gb|EES10316.1| hypothetical protein SORBIDRAFT_05g027870 [Sorghum bicolor]
Length = 440
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/255 (84%), Positives = 235/255 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGI PIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKM CL INDLDAGAGRMGGTT
Sbjct: 185 MGIIPIMMSAGELESGNAGEPAKLIRQRYREAADLISKGKMSCLFINDLDAGAGRMGGTT 244
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK +N RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 245 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKVDNARVPIIVTGNDFSTLYAPLIRDGRME 304
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+
Sbjct: 305 KFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWV 364
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ GV +I K LVNSKE PTFEQP+MT+EKLLEYG+M+V EQENVKRVQLADKYL+EAA
Sbjct: 365 AETGVENIAKKLVNSKEGPPTFEQPKMTIEKLLEYGHMLVAEQENVKRVQLADKYLNEAA 424
Query: 241 LGEANEDAIQSGNFY 255
LG ANEDA+++GNF+
Sbjct: 425 LGAANEDAMKTGNFF 439
>gi|380707033|gb|AFD97617.1| rubisco activase (chloroplast) [Ammopiptanthus mongolicus]
Length = 439
Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/255 (86%), Positives = 241/255 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKL+R+RYREAADII+KGKMC L IN LDAGAGR+GGTT
Sbjct: 184 MGINPIMMSAGELESGNAGEPAKLMRRRYREAADIIRKGKMCALFINGLDAGAGRLGGTT 243
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEE+PRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 244 QYTVNNQMVNATLMNIADNPTSVQLPGMYNKEESPRVPIIVTGNDFSTLYAPLIRDGRME 303
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR DN+ +DD+VKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 304 KFYWAPTRDDRVGVCKGIFRTDNITEDDVVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 363
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
G+GV +GK LVNSKE PTFEQP MT++KLLEYGNM+VQEQENVKRVQLA++Y+SEAA
Sbjct: 364 GGIGVEGVGKKLVNSKEGPPTFEQPSMTLQKLLEYGNMLVQEQENVKRVQLAEQYMSEAA 423
Query: 241 LGEANEDAIQSGNFY 255
LG ANEDAI+SG+F+
Sbjct: 424 LGNANEDAIKSGSFF 438
>gi|116789808|gb|ABK25395.1| unknown [Picea sitchensis]
Length = 310
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 212/256 (82%), Positives = 240/256 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GINPIMMSAGELESG+AGEPAKL+R+RYREA+DI+KKGKMC L INDLDAGAGRMG TT
Sbjct: 55 LGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLDAGAGRMGSTT 114
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 115 QYTVNNQMVNATLMNIADNPTNVQLPGMYNRQDNPRVPIVVTGNDFSTLYAPLIRDGRME 174
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVC+GIFR DNV DD+V+LVDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 175 KFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWV 234
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+G G+ +IGK L+NSKE PTFE+P MT+EKLLEYGNM+V EQ+NVKR+QLADKY+SEAA
Sbjct: 235 AGTGIQNIGKKLINSKEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRLQLADKYMSEAA 294
Query: 241 LGEANEDAIQSGNFYG 256
LG+ANED+I+ G FYG
Sbjct: 295 LGDANEDSIKRGTFYG 310
>gi|162312077|gb|ABX84141.1| rubisco activase [Ipomoea batatas]
gi|407911674|gb|AFU50385.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform a [Ipomoea batatas]
Length = 439
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/255 (83%), Positives = 235/255 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+KG MCCL INDLDAGAGRMGGTT
Sbjct: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDAGAGRMGGTT 242
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 243 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 302
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR D V D+ +VKLVDTFPGQSIDFFGALRARVYDDEVRK++
Sbjct: 303 KFYWAPTRDDRVGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFV 362
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+G+GV + + L+NS+E AP F QP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAA
Sbjct: 363 AGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAA 422
Query: 241 LGEANEDAIQSGNFY 255
LG+AN DAI +G F+
Sbjct: 423 LGDANADAINNGTFF 437
>gi|407911666|gb|AFU50381.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform [Ipomoea batatas]
Length = 439
Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/255 (83%), Positives = 235/255 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+KG MCCL INDLDAGAGRMGGTT
Sbjct: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDAGAGRMGGTT 242
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 243 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 302
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR D V D+ +VKLVDTFPGQSIDFFGALRARVYDDEVRK++
Sbjct: 303 KFYWAPTRDDRVGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFV 362
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+G+GV + + L+NS+E AP F QP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAA
Sbjct: 363 AGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAA 422
Query: 241 LGEANEDAIQSGNFY 255
LG+AN DAI +G F+
Sbjct: 423 LGDANADAINNGTFF 437
>gi|407911676|gb|AFU50386.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform b [Ipomoea batatas]
Length = 439
Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/255 (83%), Positives = 235/255 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+KG MCCL INDLDAGAGRMGGTT
Sbjct: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDAGAGRMGGTT 242
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 243 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 302
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR D V D+ +VKLVDTFPGQSIDFFGALRARVYDDEVRK++
Sbjct: 303 KFYWAPTRDDRVGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFV 362
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+G+GV + + L+NS+E AP F QP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAA
Sbjct: 363 AGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAA 422
Query: 241 LGEANEDAIQSGNFY 255
LG+AN DAI +G F+
Sbjct: 423 LGDANADAINNGTFF 437
>gi|407911678|gb|AFU50387.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform c [Ipomoea batatas]
Length = 439
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/255 (83%), Positives = 235/255 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+KG MCCL INDLDAGAGRMGGTT
Sbjct: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDAGAGRMGGTT 242
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 243 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 302
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIF+ D V D+ +VKLVDTFPGQSIDFFGALRARVYDDEVRK++
Sbjct: 303 KFYWAPTRDDRVGVCKGIFKTDGVPDEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFV 362
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+G+GV + + L+NS+E AP F QP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAA
Sbjct: 363 AGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAA 422
Query: 241 LGEANEDAIQSGNFY 255
LG+AN DAI +G F+
Sbjct: 423 LGDANADAINNGTFF 437
>gi|302803723|ref|XP_002983614.1| hypothetical protein SELMODRAFT_445595 [Selaginella moellendorffii]
gi|300148451|gb|EFJ15110.1| hypothetical protein SELMODRAFT_445595 [Selaginella moellendorffii]
Length = 440
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 214/255 (83%), Positives = 233/255 (91%), Gaps = 1/255 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
+G+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCL INDLDAGAGRMGGT
Sbjct: 186 LGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRMGGT 245
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVNNQMVNATLMNIADNPT VQLPG+YNKEE PRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 246 TQYTVNNQMVNATLMNIADNPTNVQLPGIYNKEEIPRVPIIVTGNDFSTLYAPLIRDGRM 305
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EK+YWAPTREDRIGVCKGIFR D +A+DD+VKLVD FPGQSIDFFGALRARVYDDEVRKW
Sbjct: 306 EKYYWAPTREDRIGVCKGIFRTDGIAEDDMVKLVDAFPGQSIDFFGALRARVYDDEVRKW 365
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I GV +IG LVNS++ PTF +P MT+ KL+ YG M+V+EQENVKRVQLA+KY+SEA
Sbjct: 366 IESTGVENIGSKLVNSRDGPPTFAKPAMTINKLMSYGYMLVKEQENVKRVQLAEKYMSEA 425
Query: 240 ALGEANEDAIQSGNF 254
ALG+ANEDAI+ G F
Sbjct: 426 ALGDANEDAIKQGTF 440
>gi|110740175|dbj|BAF01986.1| Rubisco activase [Arabidopsis thaliana]
Length = 259
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 214/259 (82%), Positives = 229/259 (88%)
Query: 35 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 94
+IKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN
Sbjct: 1 LIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN 60
Query: 95 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVD 154
RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD
Sbjct: 61 ARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVD 120
Query: 155 TFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLE 214
FPGQSIDFFGALRARVYDDEVRK++ +GV IGK LVNS+E P FEQP MT EKL+E
Sbjct: 121 QFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLME 180
Query: 215 YGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPT 274
YGNM+V EQENVKRVQLA+ YLS+AALG+AN DAI G FYGK AQQ+N+PVPEGCTDP
Sbjct: 181 YGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPV 240
Query: 275 AENFDPTARSDDGSCQYTL 293
AENFDPTARSDDG+C Y
Sbjct: 241 AENFDPTARSDDGTCVYNF 259
>gi|302802165|ref|XP_002982838.1| hypothetical protein SELMODRAFT_268623 [Selaginella moellendorffii]
gi|300149428|gb|EFJ16083.1| hypothetical protein SELMODRAFT_268623 [Selaginella moellendorffii]
Length = 440
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/255 (83%), Positives = 233/255 (91%), Gaps = 1/255 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
+G+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCL INDLDAGAGRMGGT
Sbjct: 186 LGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRMGGT 245
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVNNQMVNATLMNIADNPT VQLPG+YNKEE PRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 246 TQYTVNNQMVNATLMNIADNPTNVQLPGIYNKEEIPRVPIIVTGNDFSTLYAPLIRDGRM 305
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EK+YWAPTREDRIGVCKGIFR D ++DDD+V+LVD FPGQSIDFFGALRARVYDDEVRKW
Sbjct: 306 EKYYWAPTREDRIGVCKGIFRTDGISDDDMVRLVDAFPGQSIDFFGALRARVYDDEVRKW 365
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I GV +IG LVNS++ PTF +P MT+ KL+ YG M+V+EQENVKRVQLA+KY+SEA
Sbjct: 366 IESTGVENIGSKLVNSRDGPPTFAKPAMTINKLMSYGYMLVKEQENVKRVQLAEKYMSEA 425
Query: 240 ALGEANEDAIQSGNF 254
ALG+ANEDAI+ G F
Sbjct: 426 ALGDANEDAIKQGTF 440
>gi|4261547|gb|AAD13841.1|S45033_11 rubisco activase [Spinacia oleracea]
Length = 435
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/256 (81%), Positives = 231/256 (90%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTT
Sbjct: 180 LGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTT 239
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 240 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRME 299
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIF+ D V + +VKLVD FPGQSIDFFGALRARVY DEVRKW+
Sbjct: 300 KFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWV 359
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ VGV ++GK LVNSK+ P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AA
Sbjct: 360 NSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAA 419
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN+DAI G F+G
Sbjct: 420 LGDANKDAIDRGTFFG 435
>gi|168052682|ref|XP_001778769.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669888|gb|EDQ56467.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 471
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/262 (81%), Positives = 234/262 (89%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GINPI+MSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC L INDLDAG GRMGGTT
Sbjct: 174 LGINPIVMSAGELESGNAGEPAKLIRQRYREAADVIKKGKMCALFINDLDAGTGRMGGTT 233
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLP +YNKE PRVPIIVTGNDF TLYAPLIRDGRME
Sbjct: 234 QYTVNNQMVNATLMNIADNPTNVQLPSIYNKETIPRVPIIVTGNDFPTLYAPLIRDGRME 293
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNV D D+ KLVD FPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 294 KFYWAPTREDRIGVCKGIFRLDNVHDYDVAKLVDQFPGQSIDFFGALRARVYDDEVRKWI 353
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ VG+ +IG++LVNSK+ PTF++P MT++KL+EYGN++VQEQ+NVKRVQLADKYLS A
Sbjct: 354 AKVGIENIGRNLVNSKDGPPTFQKPAMTIDKLMEYGNLLVQEQQNVKRVQLADKYLSSDA 413
Query: 241 LGEANEDAIQSGNFYGKAAQQM 262
L +AN DAIQ G FYGK M
Sbjct: 414 LVDANADAIQQGTFYGKKTGWM 435
>gi|168047149|ref|XP_001776034.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672692|gb|EDQ59226.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 455
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/251 (82%), Positives = 231/251 (92%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
+PIMMSAGELESGNAGEPAKLIRQRYREAA II+KGKMCCL INDLDAGAGRMGGTTQYT
Sbjct: 205 HPIMMSAGELESGNAGEPAKLIRQRYREAAAIIQKGKMCCLFINDLDAGAGRMGGTTQYT 264
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
VNNQMVNATLMNIAD+PT VQLPG+YNKEE PRVPIIVTGNDFSTLYAPLIRDGRMEKFY
Sbjct: 265 VNNQMVNATLMNIADSPTNVQLPGVYNKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 324
Query: 124 WAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV 183
WAPTREDRIGVCKGIFR DN++DD++ K+VD FPGQSIDFFGALRARVYDDEVR WIS
Sbjct: 325 WAPTREDRIGVCKGIFRLDNISDDNVTKMVDMFPGQSIDFFGALRARVYDDEVRNWISAT 384
Query: 184 GVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGE 243
GV ++GK+LVNSK+ P F++P MT+EKL+EYG M+VQEQ+NVKRVQLA++YL+ AALG+
Sbjct: 385 GVENLGKNLVNSKDGPPEFKKPAMTIEKLMEYGQMLVQEQQNVKRVQLAEQYLNSAALGD 444
Query: 244 ANEDAIQSGNF 254
AN DAI+ G F
Sbjct: 445 ANADAIKQGKF 455
>gi|266893|sp|Q01587.1|RCA_CUCSA RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|18284|emb|CAA47906.1| rubisco activase [Cucumis sativus]
Length = 413
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/232 (88%), Positives = 218/232 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGR+GGTT
Sbjct: 179 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTT 238
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+
Sbjct: 239 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMD 298
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIG+C GIFR D V +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 299 KFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWA 358
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLA 232
GVGV IG++LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct: 359 VGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKLV 410
>gi|356624532|pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
gi|356624733|pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624734|pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624735|pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624736|pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624737|pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624738|pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/234 (87%), Positives = 217/234 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTT
Sbjct: 60 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTT 119
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 120 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 179
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR DNV +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 180 KFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWV 239
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADK 234
SG G+ IG L+NS + PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADK
Sbjct: 240 SGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293
>gi|296086200|emb|CBI31641.3| unnamed protein product [Vitis vinifera]
Length = 411
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/255 (80%), Positives = 219/255 (85%), Gaps = 27/255 (10%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTT
Sbjct: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGTT 242
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP+IVTGNDFSTLYAPLIRDGRME
Sbjct: 243 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPVIVTGNDFSTLYAPLIRDGRME 302
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR DNV +DIVKLVDTFPGQSIDFFGALRARVYDD VR WI
Sbjct: 303 KFYWAPTREDRIGVCTGIFRTDNVPVEDIVKLVDTFPGQSIDFFGALRARVYDDMVRDWI 362
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+G+GV + YG+M+VQEQENVKRVQLADKYL+EAA
Sbjct: 363 AGIGVDT---------------------------YGSMLVQEQENVKRVQLADKYLNEAA 395
Query: 241 LGEANEDAIQSGNFY 255
LG+ANEDAI+SG+F+
Sbjct: 396 LGDANEDAIKSGSFF 410
>gi|100380|pir||S25484 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) (clone
TA1.1) - common tobacco (fragment)
gi|19992|emb|CAA78704.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 232
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/232 (84%), Positives = 213/232 (91%)
Query: 23 KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 82
KLI QRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT
Sbjct: 1 KLISQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 60
Query: 83 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRND 142
VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D
Sbjct: 61 VQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTD 120
Query: 143 NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTF 202
NV ++ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+SG G+ +IG L+NS + PTF
Sbjct: 121 NVPEEAVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTF 180
Query: 203 EQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 254
EQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +GNF
Sbjct: 181 EQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 232
>gi|115392208|gb|ABI96906.1| chloroplast ribulose-1,5-bisphosphate carboxylase activase
[Triticum aestivum]
Length = 360
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/220 (85%), Positives = 207/220 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIM+SAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 141 MGINPIMLSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 200
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 201 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRME 260
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARV DDEVRKW+
Sbjct: 261 KFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVNDDEVRKWV 320
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIV 220
+ G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+V
Sbjct: 321 TSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 360
>gi|342360007|gb|AEL29575.1| chloroplast rubisco activase [Chlorella pyrenoidosa]
Length = 413
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/242 (77%), Positives = 213/242 (88%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GI+PI+MSAGELESGNAGEPAKLIRQRYREA+DIIKKG+MC L INDLDAGAGRMG T
Sbjct: 159 LGISPIVMSAGELESGNAGEPAKLIRQRYREASDIIKKGRMCSLFINDLDAGAGRMGDAT 218
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD+PT VQLPG+Y EE PRVPI+ TGNDFSTLYAPLIRDGRME
Sbjct: 219 QYTVNNQMVNATLMNIADSPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRME 278
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
K+YW PTREDRIGVC GIF++DNV D+ KLVD FPGQSIDFFGALRARVYDD+VR+WI
Sbjct: 279 KYYWNPTREDRIGVCMGIFQHDNVDRADVEKLVDAFPGQSIDFFGALRARVYDDKVREWI 338
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+G GV +IGK L+NS+E FE+P M + L++YGNM+V+EQENVKRVQLAD+Y+S AA
Sbjct: 339 TGTGVENIGKRLINSREGKVEFEKPSMNLSTLMQYGNMLVEEQENVKRVQLADEYMSGAA 398
Query: 241 LG 242
L
Sbjct: 399 LA 400
>gi|307111891|gb|EFN60125.1| hypothetical protein CHLNCDRAFT_133490 [Chlorella variabilis]
Length = 419
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/252 (73%), Positives = 214/252 (84%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GI+PI+MSAGELESGNAGEPAKLIRQRYREA+DIIKKG+M L INDLDAGAGRMG T
Sbjct: 164 LGISPIVMSAGELESGNAGEPAKLIRQRYREASDIIKKGRMSSLFINDLDAGAGRMGDAT 223
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPG+Y EE PRVPI+ TGNDFSTLYAPLIRDGRME
Sbjct: 224 QYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRME 283
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
K+YW PTREDR+GVC GIF++DNV D+ LVD FPGQSIDFFGALRARVYDD+VR+WI
Sbjct: 284 KYYWNPTREDRVGVCMGIFQHDNVDRADVETLVDAFPGQSIDFFGALRARVYDDKVREWI 343
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
G GV +IGK LVNS+E F++P M + L+ YGN++V+EQENVKRVQLAD+Y+S AA
Sbjct: 344 QGTGVENIGKRLVNSREGKVEFDKPPMPLSTLMNYGNLLVEEQENVKRVQLADEYMSGAA 403
Query: 241 LGEANEDAIQSG 252
L ++ ++ G
Sbjct: 404 LAGSSGSSLPEG 415
>gi|384253108|gb|EIE26583.1| Rubisco activase [Coccomyxa subellipsoidea C-169]
Length = 421
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/241 (76%), Positives = 211/241 (87%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+ INPI+MSAGELESGNAGEPAKL+RQRYREA+D+IKKGKM L INDLDAGAGRMG T
Sbjct: 171 LDINPIVMSAGELESGNAGEPAKLVRQRYREASDVIKKGKMSSLFINDLDAGAGRMGAGT 230
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPG+Y +EE PRVP+I TGNDFSTLYAPLIRDGRME
Sbjct: 231 QYTVNNQMVNATLMNIADNPTNVQLPGVYKQEEIPRVPVICTGNDFSTLYAPLIRDGRME 290
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAP+R+DR+GVC GIF++D V D+ LVDTFPGQSIDFFGALRARVYDD+VR+++
Sbjct: 291 KFYWAPSRDDRVGVCMGIFQHDGVNRTDVEHLVDTFPGQSIDFFGALRARVYDDKVREFV 350
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S +G+ +IGK LVNS+EA TFE+P M + LL+YGN++V EQENVKRVQLAD YLS A
Sbjct: 351 STIGLENIGKRLVNSREAKVTFEKPEMDLNTLLKYGNLLVDEQENVKRVQLADSYLSGAE 410
Query: 241 L 241
L
Sbjct: 411 L 411
>gi|302840850|ref|XP_002951971.1| hypothetical protein VOLCADRAFT_105291 [Volvox carteri f.
nagariensis]
gi|300262872|gb|EFJ47076.1| hypothetical protein VOLCADRAFT_105291 [Volvox carteri f.
nagariensis]
Length = 409
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/241 (76%), Positives = 206/241 (85%), Gaps = 1/241 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GI+PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKGKMC L INDLDAGAGRMG TT
Sbjct: 155 LGISPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGKMCSLFINDLDAGAGRMGDTT 214
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPG+Y EE PRVPI+ TGNDFSTLYAPLIRDGRME
Sbjct: 215 QYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRME 274
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
K+YW PTREDRIGVC GIF+ DNV+ D+ +LVDTFPGQSIDFFGALRARVYDD VRKWI
Sbjct: 275 KYYWNPTREDRIGVCMGIFQEDNVSRGDVERLVDTFPGQSIDFFGALRARVYDDMVRKWI 334
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ VG+ IG LVN ++ +F + M+++ LL+YG +V EQENVKRVQLAD YLS A
Sbjct: 335 AEVGIEGIGSKLVNGRQKV-SFPKVSMSLDVLLKYGRALVDEQENVKRVQLADAYLSGAE 393
Query: 241 L 241
L
Sbjct: 394 L 394
>gi|3687652|gb|AAC62207.1| rubisco activase precursor [Datisca glomerata]
Length = 373
Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/192 (93%), Positives = 184/192 (95%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQR REAADIIKKGKM CL INDLDAGAGR+GGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRCREAADIIKKGKMSCLFINDLDAGAGRLGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 302 KFYWAPTREDRIGVCTGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 361
Query: 181 SGVGVGSIGKSL 192
SGVGV +GKSL
Sbjct: 362 SGVGVQDVGKSL 373
>gi|3687676|gb|AAC62215.1| rubisco activase precursor [Datisca glomerata]
Length = 244
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/192 (93%), Positives = 184/192 (95%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQR REAADIIKKGKM CL INDLDAGAGR+GGTT
Sbjct: 53 MGINPIMMSAGELESGNAGEPAKLIRQRCREAADIIKKGKMSCLFINDLDAGAGRLGGTT 112
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 113 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 172
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 173 KFYWAPTREDRIGVCTGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 232
Query: 181 SGVGVGSIGKSL 192
SGVGV +GKSL
Sbjct: 233 SGVGVQDVGKSL 244
>gi|159468147|ref|XP_001692244.1| rubisco activase [Chlamydomonas reinhardtii]
gi|38532373|gb|AAR23425.1| rubisco activase [Chlamydomonas reinhardtii]
gi|158278430|gb|EDP04194.1| rubisco activase [Chlamydomonas reinhardtii]
Length = 408
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/243 (74%), Positives = 203/243 (83%), Gaps = 5/243 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG+MC L INDLDAGAGRMG TT
Sbjct: 155 LGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTT 214
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPG+Y EE PRVPI+ TGNDFSTLYAPLIRDGRME
Sbjct: 215 QYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRME 274
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
K+YW PTREDRIGVC GIF+ DNV ++ LVDTFPGQSIDFFGALRARVYDD VR+WI
Sbjct: 275 KYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWI 334
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTME--KLLEYGNMIVQEQENVKRVQLADKYLSE 238
+ GV IG+ LVN+++ P+++M+ L++YG +V EQENVKRVQLAD YLS
Sbjct: 335 TDTGVDKIGQQLVNARQKVAM---PKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSG 391
Query: 239 AAL 241
A L
Sbjct: 392 AEL 394
>gi|132167|sp|P23489.1|RCA_CHLRE RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|167434|gb|AAA33091.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase
[Chlamydomonas reinhardtii]
gi|227783|prf||1710353A RuBisCO activase
Length = 408
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/243 (74%), Positives = 203/243 (83%), Gaps = 5/243 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG+MC L INDLDAGAGRMG TT
Sbjct: 155 LGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTT 214
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPG+Y EE PRVPI+ TGNDFSTLYAPLIRDGRME
Sbjct: 215 QYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRME 274
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
K+YW PTREDRIGVC GIF+ DNV ++ LVDTFPGQSIDFFGALRARVYDD VR+WI
Sbjct: 275 KYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWI 334
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTME--KLLEYGNMIVQEQENVKRVQLADKYLSE 238
+ GV IG+ LVN+++ P+++M+ L++YG +V EQENVKRVQLAD YLS
Sbjct: 335 TDTGVDKIGQQLVNARQKVAM---PKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSG 391
Query: 239 AAL 241
A L
Sbjct: 392 AEL 394
>gi|410927414|gb|AFV93495.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta1, partial [Gossypium barbadense]
Length = 296
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 178/187 (95%), Positives = 178/187 (95%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 110 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 169
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 170 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 229
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR DNV DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 230 KFYWAPTREDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 289
Query: 181 SGVGVGS 187
VGV S
Sbjct: 290 GEVGVNS 296
>gi|410927420|gb|AFV93496.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta2, partial [Gossypium barbadense]
Length = 296
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 177/187 (94%), Positives = 178/187 (95%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 110 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 169
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 170 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 229
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR DNV DD+VKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 230 KFYWAPTREDRIGVCTGIFRTDNVPVDDLVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 289
Query: 181 SGVGVGS 187
VGV S
Sbjct: 290 GEVGVNS 296
>gi|1805719|emb|CAA71667.1| Rubisco activase [Chlorococcum littorale]
Length = 403
Score = 365 bits (938), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 172/241 (71%), Positives = 203/241 (84%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GI+PI+MSAGELESGNAGEPAKLIRQRYREA+D +KKGKMC L INDLDAGAGRMG T
Sbjct: 149 LGISPIVMSAGELESGNAGEPAKLIRQRYREASDSVKKGKMCSLFINDLDAGAGRMGMGT 208
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPG+Y + + PRVPI+ TGNDFSTLYAPLIRDGRME
Sbjct: 209 QYTVNNQMVNATLMNIADNPTNVQLPGVYKEVQIPRVPIVCTGNDFSTLYAPLIRDGRME 268
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
K+YW PTREDRIGVC GIF+ DNV ++ LVD FPGQSIDFFGALRARVYDD+VR+++
Sbjct: 269 KYYWNPTREDRIGVCMGIFQEDNVNRGEVEVLVDAFPGQSIDFFGALRARVYDDKVREFV 328
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
GV ++ K L+NS+E FE+P M ++ L++YG + EQENVKRVQLA++Y+ A+
Sbjct: 329 KNTGVENLSKRLINSREGKVVFEKPSMNLDILMKYGKFLTNEQENVKRVQLAEEYMMGAS 388
Query: 241 L 241
L
Sbjct: 389 L 389
>gi|255075671|ref|XP_002501510.1| ribulose bisphosphate carboxylase/oxygenase activase,chloroplast
precursor [Micromonas sp. RCC299]
gi|226516774|gb|ACO62768.1| ribulose bisphosphate carboxylase/oxygenase activase,chloroplast
precursor [Micromonas sp. RCC299]
Length = 413
Score = 363 bits (932), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 176/242 (72%), Positives = 201/242 (83%), Gaps = 1/242 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ PI+MSAGELESGNAGEPAKLIRQRYREA+DIIKKG+M L INDLDAGAGRMGG+T
Sbjct: 157 LGVGPIVMSAGELESGNAGEPAKLIRQRYREASDIIKKGRMSTLFINDLDAGAGRMGGST 216
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMN+ADNPT VQLPG Y EE PRVPII TGNDFSTLYAPLIRDGRME
Sbjct: 217 QYTVNNQMVNATLMNLADNPTNVQLPGQYQVEEIPRVPIIATGNDFSTLYAPLIRDGRME 276
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
K+YW+P+ EDR+GV GIF+ D VA+ D+ LV TF GQSIDFFGALRARVYDD+VR+WI
Sbjct: 277 KYYWSPSFEDRVGVACGIFKADGVAEKDVEVLVRTFDGQSIDFFGALRARVYDDKVREWI 336
Query: 181 SGVGVGSIGKSLVNSKEAAP-TFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
G+ ++G LVN K + TFE PRM+++ LL+YG + EQENVKRVQLAD YL A
Sbjct: 337 RETGIEAMGPLLVNPKRGSKVTFEPPRMSLDILLQYGKALEMEQENVKRVQLADAYLDGA 396
Query: 240 AL 241
L
Sbjct: 397 VL 398
>gi|19988|emb|CAA78702.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 206
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 170/204 (83%), Positives = 185/204 (90%)
Query: 53 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 112
AGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAP
Sbjct: 2 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAP 61
Query: 113 LIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVY 172
LIRDGRMEKFYWAPTREDRIGVC GIFR DNV +D+VK+VD FPGQSIDFFGALRARVY
Sbjct: 62 LIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVY 121
Query: 173 DDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLA 232
DDEVRKW+SG G+ IG L+NS + PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA
Sbjct: 122 DDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLA 181
Query: 233 DKYLSEAALGEANEDAIQSGNFYG 256
DKYL EAALG+AN DAI +G+F+
Sbjct: 182 DKYLKEAALGDANADAINNGSFFA 205
>gi|412985893|emb|CCO17093.1| predicted protein [Bathycoccus prasinos]
Length = 480
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 173/247 (70%), Positives = 204/247 (82%), Gaps = 1/247 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GI+PI+MSAGELESGNAGEPAKL+RQRYREA+DI+KKGK+ L INDLDAGAGRMGGTT
Sbjct: 225 LGISPIVMSAGELESGNAGEPAKLVRQRYREASDIVKKGKLSTLFINDLDAGAGRMGGTT 284
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPG Y E PRVP+I TGNDFSTLYAPL+RDGRM+
Sbjct: 285 QYTVNNQMVNATLMNIADNPTNVQLPGQYEVVEIPRVPVIATGNDFSTLYAPLVRDGRMD 344
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPT EDR+G+ GIF+ D V + D+ LV+ F GQSIDFFGALRARVYDD+VR++I
Sbjct: 345 KFYWAPTFEDRVGIANGIFKADGVDEADVRSLVEAFDGQSIDFFGALRARVYDDKVREFI 404
Query: 181 SGVGVGSIGKSLVNSKEAAP-TFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
+G+ +IGK LVN ++ +F+ P M++E LLEYG + EQENVKRVQLAD YL A
Sbjct: 405 QEMGLENIGKRLVNVRKGEEVSFDAPAMSIEILLEYGKALENEQENVKRVQLADAYLDGA 464
Query: 240 ALGEANE 246
L ++E
Sbjct: 465 VLAGSDE 471
>gi|308802948|ref|XP_003078787.1| RuBisCO activase (IC) [Ostreococcus tauri]
gi|116057240|emb|CAL51667.1| RuBisCO activase (IC) [Ostreococcus tauri]
Length = 407
Score = 359 bits (922), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 176/252 (69%), Positives = 200/252 (79%), Gaps = 5/252 (1%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GINPI+MSAGELESGNAGEPAKL+RQRYREA+DI+KKG+M L INDLDAGAGRMGGTT
Sbjct: 150 LGINPIVMSAGELESGNAGEPAKLVRQRYREASDIVKKGRMSTLFINDLDAGAGRMGGTT 209
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPG Y E PRVPII TGNDFSTLYAPL+RDGRM+
Sbjct: 210 QYTVNNQMVNATLMNIADNPTNVQLPGQYEVIEIPRVPIIATGNDFSTLYAPLVRDGRMD 269
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYW+PT EDR+G+ GIF D V+ +D+ LV TF GQSIDFFGALRARVYDD+VR +I
Sbjct: 270 KFYWSPTFEDRVGIANGIFMADGVSPEDVEVLVSTFEGQSIDFFGALRARVYDDKVRDFI 329
Query: 181 SGVGVGSIGKSLVNSKEAAP-TFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
VG +GK L+N ++ FE P MT+E LL YG I EQEN+KR+QLAD YL A
Sbjct: 330 LSVGYDQLGKRLINPRKGEEVVFEPPAMTLEVLLAYGKEIENEQENIKRIQLADAYLDGA 389
Query: 240 AL----GEANED 247
L G +N D
Sbjct: 390 VLAGSGGSSNTD 401
>gi|149941206|emb|CAO02535.1| putative rubisco activase [Vigna unguiculata]
Length = 244
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 169/189 (89%), Positives = 178/189 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGR+GGTT
Sbjct: 56 MGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTT 115
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 116 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAPLIRDGRME 175
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR D V + ++ KLVDTFPGQSIDFFGALRA+VYDDEVRKW+
Sbjct: 176 KFYWAPTRDDRVGVCKGIFRTDGVPEKEVTKLVDTFPGQSIDFFGALRAKVYDDEVRKWV 235
Query: 181 SGVGVGSIG 189
SGVGV IG
Sbjct: 236 SGVGVDGIG 244
>gi|145346050|ref|XP_001417509.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577736|gb|ABO95802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 415
Score = 353 bits (905), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 169/242 (69%), Positives = 196/242 (80%), Gaps = 1/242 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GI+PI+MSAGELESGNAGEPAKL+RQRYREA+DI+KKG+M L INDLDAGAGRMGGTT
Sbjct: 159 LGISPIVMSAGELESGNAGEPAKLVRQRYREASDIVKKGRMSTLFINDLDAGAGRMGGTT 218
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPG Y E PRVPII TGNDFSTLYAPL+RDGRM+
Sbjct: 219 QYTVNNQMVNATLMNIADNPTNVQLPGQYEVIEIPRVPIIATGNDFSTLYAPLVRDGRMD 278
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYW+PTREDR+G+ GIF D + +D+ LVDTF GQSIDFFGALR+RVYDD VR +I
Sbjct: 279 KFYWSPTREDRVGIANGIFMADGIEKEDVEVLVDTFEGQSIDFFGALRSRVYDDLVRDFI 338
Query: 181 SGVGVGSIGKSLVNSKEAAPT-FEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
VG ++G L+N ++ F P+MT+E LL YG + EQEN+KR+QLAD YL A
Sbjct: 339 LEVGYEALGPRLINPRKGEEVNFNPPKMTLEVLLAYGKELENEQENIKRIQLADAYLDGA 398
Query: 240 AL 241
L
Sbjct: 399 VL 400
>gi|303277399|ref|XP_003057993.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226460650|gb|EEH57944.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 419
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 175/243 (72%), Positives = 195/243 (80%), Gaps = 2/243 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GI PI+MSAGELESGNAGEPAKLIRQRYREA+DIIKKGKM L INDLDAGAGRMGG+T
Sbjct: 158 LGIAPIIMSAGELESGNAGEPAKLIRQRYREASDIIKKGKMSTLFINDLDAGAGRMGGST 217
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMN+ADNPT VQLPG Y EE PRVPII TGNDFSTLYAPLIRDGRM+
Sbjct: 218 QYTVNNQMVNATLMNLADNPTNVQLPGQYQVEEIPRVPIIATGNDFSTLYAPLIRDGRMD 277
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYW+PT EDR GV GIF+ D V + D+ LV TF GQSIDFFGALRARVYD +VR+W+
Sbjct: 278 KFYWSPTFEDRCGVACGIFKADGVNEKDVEVLVRTFDGQSIDFFGALRARVYDQKVREWV 337
Query: 181 SGVGVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSE 238
VG +IG LVN + FE P M++E LL++G + EQENVKRVQLAD YL
Sbjct: 338 QTVGQENIGSYLVNPSRDKGKLEFEPPVMSLEVLLQHGKALEGEQENVKRVQLADAYLDG 397
Query: 239 AAL 241
A L
Sbjct: 398 AVL 400
>gi|149941202|emb|CAO02533.1| putative rubisco activase [Vigna unguiculata]
Length = 251
Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 165/182 (90%), Positives = 174/182 (95%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGR+GGTT
Sbjct: 70 MGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTT 129
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 130 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAPLIRDGRME 189
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR D V ++++ KLVDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 190 KFYWAPTRDDRVGVCKGIFRTDGVPEEEVTKLVDTFPGQSIDFFGALRARVYDDEVRKWV 249
Query: 181 SG 182
SG
Sbjct: 250 SG 251
>gi|37783283|gb|AAP72270.1| ribulose-1,5-bisphosphate carboxylase activase [Triticum aestivum]
Length = 201
Score = 346 bits (887), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 156/201 (77%), Positives = 183/201 (91%)
Query: 93 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKL 152
ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+
Sbjct: 1 ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKI 60
Query: 153 VDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKL 212
VDTFPGQSIDFFGALRARVYDDEVRKW++ G+ +IGK LVNS++ TFEQP+MT+EKL
Sbjct: 61 VDTFPGQSIDFFGALRARVYDDEVRKWVTSTGIENIGKKLVNSRDGPVTFEQPKMTVEKL 120
Query: 213 LEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTD 272
LEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G FYGK AQQ +PVP GCTD
Sbjct: 121 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGTFYGKGAQQGTLPVPAGCTD 180
Query: 273 PTAENFDPTARSDDGSCQYTL 293
TA+NFDPTARSDDGSC YT
Sbjct: 181 QTAKNFDPTARSDDGSCLYTF 201
>gi|312064704|gb|ADQ27442.1| chloroplast Rubisco activase [Solanum tuberosum]
Length = 359
Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 161/176 (91%), Positives = 169/176 (96%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTT
Sbjct: 184 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTT 243
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 244 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENCRVPIIVTGNDFSTLYAPLIRDGRME 303
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEV 176
KFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEV
Sbjct: 304 KFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEV 359
>gi|13569643|gb|AAK31173.1| ribulose-1,5-bisphosphate carboxylase activase [Oryza sativa Indica
Group]
Length = 193
Score = 337 bits (863), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 156/190 (82%), Positives = 177/190 (93%)
Query: 69 VNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 128
VNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR
Sbjct: 1 VNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 60
Query: 129 EDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSI 188
+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S GV +I
Sbjct: 61 DDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENI 120
Query: 189 GKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDA 248
GK LVNS+E P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN DA
Sbjct: 121 GKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDA 180
Query: 249 IQSGNFYGKA 258
+++G+FYG A
Sbjct: 181 MKTGSFYGSA 190
>gi|428227229|ref|YP_007111326.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
gi|427987130|gb|AFY68274.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
Length = 415
Score = 336 bits (862), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 157/236 (66%), Positives = 194/236 (82%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI P+ MSAGELES +AG+PA+LIR RYREA + I+ +G+MC LMINDLDAGAGR G
Sbjct: 54 MGIEPVHMSAGELESPDAGDPARLIRLRYREAGEYIRTRGRMCVLMINDLDAGAGRFDGG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+++ PRVPI+VTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTNVQLPGSYDEKPLPRVPILVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P EDR+G+ GIF +D ++ D +LVDTFP QSIDFFGALR+R YD++VR++
Sbjct: 174 EKFYWDPDYEDRVGIVSGIFSDDGLSRQDFERLVDTFPAQSIDFFGALRSRFYDEQVRRF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I VGV + L+NSKE APTF++PR T+E+LLE+G ++VQEQE V+ +LA++Y
Sbjct: 234 IQEVGVEQVSFRLLNSKEGAPTFQKPRFTLERLLEFGYLMVQEQERVRTSRLAEEY 289
>gi|388505442|gb|AFK40787.1| unknown [Lotus japonicus]
Length = 187
Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 158/187 (84%), Positives = 173/187 (92%)
Query: 68 MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 127
MVNATLMNIADNPT VQLPGMYNKE+NPRVPI+VTGND STLYAPLIRDGRMEKFYWAPT
Sbjct: 1 MVNATLMNIADNPTNVQLPGMYNKEDNPRVPIVVTGNDSSTLYAPLIRDGRMEKFYWAPT 60
Query: 128 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGS 187
REDRIGVCKGIF+ DNV+++ +V +VDTFPGQSIDFFGALRARVYDDEVRKWISGVGV
Sbjct: 61 REDRIGVCKGIFQTDNVSEEAVVTIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDL 120
Query: 188 IGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANED 247
IGK LVNSKE P FEQP+MT+EKLLEYGNM+VQEQENV+RVQLADKYL+EAALG AN+D
Sbjct: 121 IGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVQEQENVERVQLADKYLNEAALGNANDD 180
Query: 248 AIQSGNF 254
AI+ G F
Sbjct: 181 AIKRGTF 187
>gi|149941204|emb|CAO02534.1| putative rubisco activase [Vigna unguiculata]
Length = 229
Score = 334 bits (856), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 158/174 (90%), Positives = 167/174 (95%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGR+GGTT
Sbjct: 56 MGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTT 115
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 116 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 175
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDD 174
KFYWAPTR+DR+GVCKGIFR D V ++++ +LVDTFPGQSIDFFGALRARVYDD
Sbjct: 176 KFYWAPTRDDRVGVCKGIFRTDGVPEEEVYQLVDTFPGQSIDFFGALRARVYDD 229
>gi|327323113|gb|AEA48974.1| rubisco activase, partial [Rosa roxburghii]
Length = 265
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/256 (66%), Positives = 184/256 (71%), Gaps = 51/256 (19%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAG E A +I++ + GR
Sbjct: 61 MGINPIMMSAGELESGNAG-----------EPAKLIRQRYL------------GR----- 92
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
G YNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 93 -----------------------DHAGRYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 129
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVC GIF+ D+VA DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 130 KFYWAPTRDDRIGVCTGIFKTDSVAQSDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 189
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV +GK LVNSKE PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLAD+YL+EAA
Sbjct: 190 SGVGVDGVGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADQYLNEAA 249
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN DAI G F+G
Sbjct: 250 LGDANSDAIDRGTFFG 265
>gi|410927480|gb|AFV93499.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta1, partial [Gossypium barbadense]
Length = 236
Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 155/161 (96%), Positives = 155/161 (96%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 76 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 135
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 136 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 195
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 161
KFYWAPTREDRIGVC GIFR DNV DDIVKLVDTFPGQSI
Sbjct: 196 KFYWAPTREDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSI 236
>gi|410927496|gb|AFV93500.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta2, partial [Gossypium barbadense]
Length = 250
Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 154/161 (95%), Positives = 155/161 (96%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 90 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 149
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 150 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 209
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 161
KFYWAPTREDRIGVC GIFR DNV DD+VKLVDTFPGQSI
Sbjct: 210 KFYWAPTREDRIGVCTGIFRTDNVPVDDLVKLVDTFPGQSI 250
>gi|307102907|gb|EFN51173.1| hypothetical protein CHLNCDRAFT_141315 [Chlorella variabilis]
Length = 295
Score = 319 bits (818), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 160/252 (63%), Positives = 187/252 (74%), Gaps = 30/252 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GI PI+MSAGELESGNAGEPAKLIRQRYREA+D+IKKG+MC L INDLDAGAGRMG T
Sbjct: 62 LGIAPIVMSAGELESGNAGEPAKLIRQRYREASDVIKKGRMCSLFINDLDAGAGRMGDAT 121
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPG+Y EE PRVPI
Sbjct: 122 QYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPI--------------------- 160
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
DRIGVC GIF++DNV D+ KLVD FPGQSIDFFGA+RARVYDD+V WI
Sbjct: 161 ---------DRIGVCMGIFQHDNVDRADVEKLVDAFPGQSIDFFGAIRARVYDDKVHDWI 211
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
G GV +IGK L+NSKE TF++P M + L++YGN++V+EQENVKRVQLAD+Y+S AA
Sbjct: 212 MGTGVENIGKRLINSKEGKVTFDKPSMDLGTLMKYGNLLVEEQENVKRVQLADEYMSGAA 271
Query: 241 LGEANEDAIQSG 252
L ++ ++ G
Sbjct: 272 LAGSSGSSLPEG 283
>gi|149941210|emb|CAO02537.1| putative rubisco activase [Vigna unguiculata]
Length = 236
Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 151/167 (90%), Positives = 159/167 (95%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGR+GGTT
Sbjct: 70 MGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTT 129
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 130 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAPLIRDGRME 189
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGAL 167
KFYWAPTR+DR+GVCKGIFR D V ++++ KLVDTFPGQSIDFFGAL
Sbjct: 190 KFYWAPTRDDRVGVCKGIFRTDGVPEEEVYKLVDTFPGQSIDFFGAL 236
>gi|334117637|ref|ZP_08491728.1| ribulose bisphosphate carboxylase small chain [Microcoleus
vaginatus FGP-2]
gi|333460746|gb|EGK89354.1| ribulose bisphosphate carboxylase small chain [Microcoleus
vaginatus FGP-2]
Length = 425
Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 143/236 (60%), Positives = 187/236 (79%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG P+M+S GELES +AG+PA+LIR RYREAA+ I+ +G+MC + INDLDAGAGR T
Sbjct: 54 MGFEPVMISGGELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDST 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN QMVNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQMVNATLMNIADNPTNVQLPGSYDSTPLDRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P+R+D+IG+ GIF +D ++ +IV LVD FP Q+IDFF ALR+R+YD+++R++
Sbjct: 174 EKFYWEPSRDDKIGIVGGIFESDKLSKTEIVGLVDNFPDQAIDFFSALRSRIYDEQIREF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I +G+ + K LVN+ EAAP F+ P ++ LLE G+++V +Q+ ++ ++L D+Y
Sbjct: 234 IHKIGIERVSKRLVNTLEAAPDFQNPNFSLAHLLEMGSLMVGQQKRIQEMRLVDEY 289
>gi|428320865|ref|YP_007118747.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
gi|428244545|gb|AFZ10331.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
Length = 424
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/236 (61%), Positives = 187/236 (79%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG P+M+S GELES +AG+PA+LIR RYREAA+ I+ +G+MC + INDLDAGAGR T
Sbjct: 54 MGFEPVMISGGELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDTT 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN QMVNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQMVNATLMNIADNPTNVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P+R+D+IG+ GIF +D ++ +IV LVD FP Q+IDFF ALR+R+YD++VR++
Sbjct: 174 EKFYWEPSRDDKIGIVGGIFESDKLSKTEIVGLVDHFPDQAIDFFSALRSRIYDEQVREF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I VG+ + K LVN+ EAAP F+ P ++ LLE G+++V +Q+ ++ ++L D+Y
Sbjct: 234 IHKVGIERVSKRLVNTLEAAPDFKNPDFSLAHLLEMGSLMVGQQKRIQEMRLVDEY 289
>gi|411118859|ref|ZP_11391239.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410710722|gb|EKQ68229.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 507
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 153/289 (52%), Positives = 203/289 (70%), Gaps = 20/289 (6%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+N + MSAGELES +AG+PA+LIR RYREAA+++K +GKM LMIND+DAGAGR+
Sbjct: 113 MGVNVVHMSAGELESPDAGDPARLIRLRYREAAELVKVRGKMAVLMINDIDAGAGRVDQY 172
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VN TLMNIADNPT VQLPG Y+ E R+PIIVTGNDFSTLY PL+RDGRM
Sbjct: 173 TQYTVNTQLVNGTLMNIADNPTNVQLPGSYDSEPIQRIPIIVTGNDFSTLYQPLVRDGRM 232
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P +DR+G+ GIF+ D V+ DI KLVDTFP Q+IDFFGALR+R++D+++R +
Sbjct: 233 EKFYWEPNWDDRVGIVAGIFQVDPVSRADIEKLVDTFPNQAIDFFGALRSRLFDEQIRNF 292
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLA---DKYL 236
I VG+ + + +VNSKEA P F++P ++ L+E GN +V EQ+ V+ LA +K+L
Sbjct: 293 IHSVGIERVSQRVVNSKEAPPEFKKPDFSLPHLIEVGNQMVYEQKRVQESGLAQEYNKFL 352
Query: 237 SEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSD 285
LG+ + + +G D ++ NF T +S+
Sbjct: 353 YNRRLGDTDSSTLPR----------------QGSIDSSSSNFFRTYQSE 385
>gi|428305071|ref|YP_007141896.1| ribulose 1,5-bisphosphate carboxylase small subunit [Crinalium
epipsammum PCC 9333]
gi|428246606|gb|AFZ12386.1| ribulose 1,5-bisphosphate carboxylase small subunit [Crinalium
epipsammum PCC 9333]
Length = 427
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 136/236 (57%), Positives = 188/236 (79%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI + MSAGELES +AG+P++L+R RYREAA++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGIEVVHMSAGELESPDAGDPSRLVRLRYREAAELIKVRGKMCVLMINDLDAGAGRFDQG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN QMVNATLMNIADNPT VQLPG Y+ RVPI+VTGNDF+TLYAPLIRDGRM
Sbjct: 114 TQYTVNTQMVNATLMNIADNPTNVQLPGSYDSTPLHRVPILVTGNDFTTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKF+W PTR++++G+ +GI+ D +++ +I +LVD F Q++DFFGALR+R+YD+++R++
Sbjct: 174 EKFHWEPTRDEKVGIVRGIYSEDGLSESEIAQLVDNFVTQAVDFFGALRSRIYDEQIRQF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I VG + ++VNS + P F++P ++ +L+E+GN++ QEQ+ V+ +L ++Y
Sbjct: 234 IHQVGYNKVSSAVVNSVDGPPIFQKPDFSLSRLIEFGNLMAQEQQRVQSSRLVEEY 289
>gi|428299641|ref|YP_007137947.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
gi|428236185|gb|AFZ01975.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
Length = 425
Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 143/236 (60%), Positives = 186/236 (78%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI ++S GELES +AG+PA+LIR RYRE A+++K +GKMC LMINDLDAGAGR
Sbjct: 54 MGIEVTLISGGELESPDAGDPARLIRLRYRETAELVKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R+D++GV +GIF +D ++ ++ +LVDTFP QSIDF+ A+R+R+YD++V +
Sbjct: 174 EKFYWEPDRDDKVGVVEGIFGDDGLSRREVAQLVDTFPNQSIDFYSAMRSRLYDEQVLHF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I +GV ++ + +VNS EAAP F +P ++ +LLE GN +V EQ++V+ QL ++Y
Sbjct: 234 IHDIGVENVSQRVVNSAEAAPIFGKPDFSLSRLLEMGNFMVSEQQHVENSQLVEQY 289
>gi|300868066|ref|ZP_07112703.1| Ribulose bisphosphate carboxylase/oxygenase activase [Oscillatoria
sp. PCC 6506]
gi|300333904|emb|CBN57881.1| Ribulose bisphosphate carboxylase/oxygenase activase [Oscillatoria
sp. PCC 6506]
Length = 425
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 141/252 (55%), Positives = 185/252 (73%), Gaps = 1/252 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
+G P+ +S GELES +AG+PA+LIR RYREAA+ I+ +G+MC + INDLDAGAGR T
Sbjct: 54 LGFEPVTISGGELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDST 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDF+TLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTNVQLPGSYDDTPLHRVPIIVTGNDFATLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R+D+IG+ GIF D + +I + VD FP Q+IDFF ALR+R+YD+++R++
Sbjct: 174 EKFYWEPNRDDKIGIVSGIFEADGMPQSEIAEFVDAFPDQAIDFFSALRSRIYDEQIREF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I G+G+ + K LVNS EAAP F +P ++ +L+E G +V +Q +K ++L ++Y
Sbjct: 234 IHGIGIEKVSKRLVNSLEAAPHFPKPNFSLSRLIEIGRAMVGQQYRIKEMRLVEEYNQNR 293
Query: 240 ALGEANEDAIQS 251
G N + S
Sbjct: 294 LFGSQNSGEVSS 305
>gi|116791872|gb|ABK26141.1| unknown [Picea sitchensis]
Length = 363
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 140/161 (86%), Positives = 154/161 (95%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GINPIMMSAGELESG+AGEPAKL+R+RYREA+DI+KKGKMC L INDL+AGAGRMG TT
Sbjct: 185 LGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLEAGAGRMGSTT 244
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK++NPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 245 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRDGRME 304
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 161
KFYWAPTR+DRIGVC+GIFR DNV DD+V+LVDTFPGQSI
Sbjct: 305 KFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSI 345
>gi|75910107|ref|YP_324403.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
gi|75703832|gb|ABA23508.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
Length = 414
Score = 302 bits (774), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 145/236 (61%), Positives = 180/236 (76%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R+D++G+ GIF D ++ +I +LVDTFP QSIDFF ALR+R+YD+++R +
Sbjct: 174 EKFYWEPNRDDKVGIVGGIFAEDGLSKREIEQLVDTFPKQSIDFFSALRSRIYDEQIRDF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I VG I +VNS EA P F++P ++ L+E GN+++ EQ+ V QL D+Y
Sbjct: 234 IHQVGFERISLRVVNSVEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>gi|427728382|ref|YP_007074619.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
gi|427364301|gb|AFY47022.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
Length = 415
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 142/236 (60%), Positives = 179/236 (75%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R+D++G+ GIF D ++ ++ +LVDTFP QSIDFF ALR+R+YD+++R +
Sbjct: 174 EKFYWEPNRDDKVGIVGGIFGEDGLSQREVEQLVDTFPNQSIDFFSALRSRIYDEQIRNF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I VG + +VNS E P F++P ++ L+E GN +V EQ+ V+ QL D+Y
Sbjct: 234 IHQVGFEHVSLRVVNSLEGPPAFKKPEFSLSHLIESGNFMVGEQKRVETSQLVDEY 289
>gi|113475266|ref|YP_721327.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
gi|110166314|gb|ABG50854.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
Length = 423
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 141/243 (58%), Positives = 181/243 (74%), Gaps = 1/243 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI P+ +S GELES +AG+PA+L+R RYREA++ +K +G+MC L INDLDAGAGR G
Sbjct: 54 MGIEPVTISGGELESKDAGDPARLLRLRYREASEKVKVQGRMCALFINDLDAGAGRFDGG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y++ R+PIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTNVQLPGSYDETPLHRIPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P REDR+G+ IF+ D ++ DI L+D F Q+IDFF ALR+R+YD+++R +
Sbjct: 174 EKFYWEPNREDRVGIVGSIFKTDELSTGDIDNLIDEFSDQAIDFFSALRSRIYDEQIRDF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I VG+ I + +VNS E P F QP + +LLEYG ++V EQE ++ + L ++Y
Sbjct: 234 IHQVGIEKISRRVVNSVEKIPDFPQPTFNVSRLLEYGKIMVGEQERIRELGLVEEYNKSR 293
Query: 240 ALG 242
G
Sbjct: 294 LFG 296
>gi|209526170|ref|ZP_03274701.1| ribulose bisphosphate carboxylase small chain [Arthrospira maxima
CS-328]
gi|376005139|ref|ZP_09782687.1| Ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
sp. PCC 8005]
gi|423065450|ref|ZP_17054240.1| ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
platensis C1]
gi|209493426|gb|EDZ93750.1| ribulose bisphosphate carboxylase small chain [Arthrospira maxima
CS-328]
gi|375326497|emb|CCE18440.1| Ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
sp. PCC 8005]
gi|406713143|gb|EKD08317.1| ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
platensis C1]
Length = 434
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 134/236 (56%), Positives = 186/236 (78%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI P+M+S GELES +AG+P++L+R RYREAA+ ++ KG+MC + IND DAGAGR
Sbjct: 54 MGIEPVMISGGELESPDAGDPSRLLRLRYREAAEQVRVKGQMCAIFINDFDAGAGRFDSG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y++ R+PII+TGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTNVQLPGSYDETPLHRIPIIITGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
+KFYW P+REDRI + +GIF +D+++D I+KLVD F GQ+IDFF A+R+R+YD+++R++
Sbjct: 174 DKFYWEPSREDRIAIVRGIFADDSLSDSQIIKLVDDFTGQAIDFFSAMRSRIYDEQIREF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I G+ I + LVNS + P QP +++ L+E G +V+EQ+ +++++L ++Y
Sbjct: 234 IYHQGLDKISRRLVNSVDKPPELPQPDFSLQHLIESGRAMVEEQQQIQKLRLVEEY 289
>gi|186684323|ref|YP_001867519.1| ribulose bisphosphate carboxylase, small chain [Nostoc punctiforme
PCC 73102]
gi|186466775|gb|ACC82576.1| ribulose bisphosphate carboxylase, small chain [Nostoc punctiforme
PCC 73102]
Length = 425
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 155/294 (52%), Positives = 195/294 (66%), Gaps = 9/294 (3%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI +S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGIEVTHVSGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R+D++G+ KGIF D ++ ++ +LVDTF QSIDFF ALR+R+YD+++R +
Sbjct: 174 EKFYWEPDRDDKVGIVKGIFEPDGLSQKEVEQLVDTFVNQSIDFFSALRSRIYDEQIRNY 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I VG + S+VNS E P F++P + L+E GN +V EQ+ V+ L D Y +
Sbjct: 234 IHQVGFERVSLSVVNSTEGPPEFKKPDFRLSHLIESGNFLVGEQKRVENSHLVDDY-NRL 292
Query: 240 ALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
G ++ A AA +N P G T N + + + S TL
Sbjct: 293 NRGRNSQSA-------SPAATPINQPSSNGATQEAKTNGNGFQKQEGLSSHLTL 339
>gi|17229025|ref|NP_485573.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nostoc
sp. PCC 7120]
gi|20139326|sp|P58555.1|RCA_ANASP RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase;
Short=RA; Short=RuBisCO activase
gi|17135353|dbj|BAB77899.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nostoc
sp. PCC 7120]
Length = 414
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 145/236 (61%), Positives = 179/236 (75%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R+D++G+ GIF D ++ +I +LVDTFP QSIDFF ALR+R+YD ++R +
Sbjct: 174 EKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I VG I +VNS EA P F++P ++ L+E GN+++ EQ+ V QL D+Y
Sbjct: 234 IHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>gi|434391832|ref|YP_007126779.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
gi|428263673|gb|AFZ29619.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
Length = 462
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 147/252 (58%), Positives = 185/252 (73%), Gaps = 3/252 (1%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI I +S GELES +AG+PA+LIR RYREAA++IK +GKM LMINDLDAGAGR
Sbjct: 54 MGIEVIHISGGELESPDAGDPARLIRLRYREAAELIKVRGKMVALMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIR+GRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIREGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R+D+IG+ GIF D ++ ++ +LVD FP Q+IDFF ALR+RVYD+++R++
Sbjct: 174 EKFYWEPDRDDKIGIVGGIFAEDGLSAQEVTQLVDAFPDQAIDFFSALRSRVYDEQIRRF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I G+ + +VNS E P F++P + LLE GN +VQEQ+ V+ +L +Y
Sbjct: 234 IHETGIERVSLRVVNSTEGPPVFQKPDFRLSHLLESGNFMVQEQQRVESSRLVHEY--NQ 291
Query: 240 ALGEANEDAIQS 251
AL AN + I +
Sbjct: 292 ALYYANRNPISA 303
>gi|443313470|ref|ZP_21043081.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
gi|442776413|gb|ELR86695.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
Length = 498
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 142/236 (60%), Positives = 177/236 (75%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI I MSAGELES +AG+P +L+R RYREA+++ K +GKMC LMINDLDAGAGR
Sbjct: 54 MGIEAIHMSAGELESPDAGDPGRLVRLRYREASELSKVRGKMCVLMINDLDAGAGRFDRG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VN TLMNIADNPT VQLPG Y+ R+PIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNGTLMNIADNPTDVQLPGSYDSTPLQRIPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKF+W P R+D++G+ GIF D + DI KLVDTF Q IDFF ALR+R+YD+++R +
Sbjct: 174 EKFFWEPNRDDKVGIVSGIFEPDGLPKRDIEKLVDTFLNQPIDFFSALRSRIYDEQIRDF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I G + +VNS EAAPTF +P + +L+EYGN++V+EQ+ V+ L +Y
Sbjct: 234 IHTTGFEKVSLRVVNSTEAAPTFAKPNFQLPRLIEYGNLMVKEQQRVENSGLVREY 289
>gi|332710946|ref|ZP_08430882.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
gi|332350260|gb|EGJ29864.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
Length = 448
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 139/236 (58%), Positives = 179/236 (75%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI + MS+GELES +AG+PA+LIR RYRE A++I+ KGKMC LMINDLDAGAGR
Sbjct: 56 MGIEAVHMSSGELESPDAGDPARLIRLRYRETAEMIRVKGKMCVLMINDLDAGAGRFDER 115
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+V+ TLMNIADNPT VQLPG Y+ + RVPIIVTGNDFSTLYAPL RDGRM
Sbjct: 116 TQYTVNTQLVHGTLMNIADNPTNVQLPGSYDSQPIHRVPIIVTGNDFSTLYAPLTRDGRM 175
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
KFYW P REDRIG+ GIF D ++ +I +L+DTF Q+IDFF ALR+R+YD+++RK+
Sbjct: 176 SKFYWEPNREDRIGIVSGIFHGDGLSSGEIEQLIDTFDNQAIDFFSALRSRIYDEQIRKF 235
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I +G+ + +VNSK+ P FE P ++ +L+E+G +I EQ+ ++ LA +Y
Sbjct: 236 IYDIGIDRVSSRVVNSKQGPPKFETPNFSISRLIEFGELIKAEQQRLELSGLAREY 291
>gi|10720250|sp|Q06721.1|RCA_ANASC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase;
Short=RA; Short=RuBisCO activase
gi|485516|pir||S33627 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) - Anabaena
sp. (strain CA)
gi|296414|emb|CAA48129.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Anabaena
sp. CA]
Length = 415
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 141/236 (59%), Positives = 179/236 (75%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R++++G+ GIF D ++ D+ KLVD+FP QSIDFF ALR+R+YD+++R +
Sbjct: 174 EKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I VG ++ +VNS E P F++P T+ L+E N +V EQ+ ++ QL D+Y
Sbjct: 234 IHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289
>gi|428310574|ref|YP_007121551.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
gi|428252186|gb|AFZ18145.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
Length = 437
Score = 300 bits (767), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 142/236 (60%), Positives = 177/236 (75%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ + MSAGELES +AG+PA+LIR RYREAA++I+ +GKM LMINDLDAGAGR
Sbjct: 54 MGVEAVHMSAGELESPDAGDPARLIRLRYREAAELIRVRGKMAVLMINDLDAGAGRFDQG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VN TLMNIADNPT VQLPG Y+ RVPI+VTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNGTLMNIADNPTDVQLPGSYDSTPLHRVPILVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P REDRIG+ GIF D + I +LVDTFPGQ IDFF ALR+R+YD+++ ++
Sbjct: 174 EKFYWEPDREDRIGIVSGIFSEDGLPRQQIEQLVDTFPGQPIDFFSALRSRIYDEQILQF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I +G I +VNS E AP F +P + +L+E+GN++ EQ+ V+ + L +Y
Sbjct: 234 IQKIGFERISSRIVNSAEEAPKFPKPNFNLSRLIEFGNLLRGEQKQVENMGLVREY 289
>gi|220909662|ref|YP_002484973.1| ribulose bisphosphate carboxylase small chain [Cyanothece sp. PCC
7425]
gi|219866273|gb|ACL46612.1| ribulose bisphosphate carboxylase small chain [Cyanothece sp. PCC
7425]
Length = 423
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 139/236 (58%), Positives = 183/236 (77%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI + MSAGELES +AG+P++LIR RYREA + K G+M LMIND+DAG GR+ T
Sbjct: 54 MGIGVVYMSAGELESPDAGDPSRLIRLRYREAGEWSKVNGRMAALMINDVDAGIGRVDET 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y++E R+PII+TGNDFST+YAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTNVQLPGSYDQEPTRRIPIILTGNDFSTMYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R DR+G+ +GIF D + D +I KLVD+FP QSIDFFGALR+R+YD+++R+
Sbjct: 174 EKFYWEPDRSDRLGIVQGIFALDQIPDPEIEKLVDSFPDQSIDFFGALRSRLYDEQIRQL 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I VG+ I +VNS E P F +P ++ L+E G ++V+EQ+ ++ ++L+++Y
Sbjct: 234 IQEVGIERISPRVVNSAEPLPEFRRPNFSLPHLIEIGQLMVREQQRIRELRLSEEY 289
>gi|427715651|ref|YP_007063645.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
gi|427348087|gb|AFY30811.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
Length = 417
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 141/236 (59%), Positives = 180/236 (76%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDF+TLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFTTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R+D++G+ GIF D ++ ++ +LVDTFP QSIDF+ A+R+R+YD+++R +
Sbjct: 174 EKFYWEPDRDDKVGIVGGIFEPDGLSRKEVEQLVDTFPHQSIDFYSAVRSRIYDEQIRNY 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I VG + S+VNS E P F++P + L+E GN++V EQ+ V+ QL D+Y
Sbjct: 234 IHKVGFEQVSLSVVNSVEGPPEFKKPNFGLSHLIEAGNLMVGEQKRVENSQLVDEY 289
>gi|428220631|ref|YP_007104801.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
gi|427993971|gb|AFY72666.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
Length = 418
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/239 (58%), Positives = 182/239 (76%), Gaps = 2/239 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI P+ MSAGELES +AG+P +LIR RYREAAD+IK +GKMC L+IND+DAGAGR+ +
Sbjct: 54 MGIEPVRMSAGELESPDAGDPVRLIRTRYREAADLIKVRGKMCVLLINDIDAGAGRVDSS 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VN TLMNIADNPT VQLPG Y E RVPI++TGNDFSTLYAPL+RDGRM
Sbjct: 114 TQYTVNTQLVNGTLMNIADNPTDVQLPGSYETEPISRVPILLTGNDFSTLYAPLLRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW PT+EDRIG+ GIF+ D + + ++ +L+ FP QSIDFFGALR++VYD +VR +
Sbjct: 174 EKFYWEPTKEDRIGIVTGIFKADGLTEQNVEELISNFPHQSIDFFGALRSQVYDQQVRDF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQ-PRMTMEKLLEYGNMIVQEQENVKRVQLADKYLS 237
I +G+ + +VN+ + F+Q P + L++ GNM+V EQ+ V+ L ++Y +
Sbjct: 234 IREIGINKVSTHIVNNPDLTVKFQQSPNFGLPYLIKLGNMMVHEQQRVQSRGLVEEYTT 292
>gi|119508823|ref|ZP_01627975.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nodularia
spumigena CCY9414]
gi|119466352|gb|EAW47237.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nodularia
spumigena CCY9414]
Length = 416
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/236 (60%), Positives = 177/236 (75%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI +S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGIEVTNISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN QMVNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQMVNATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R+D++G+ GIF D ++ ++ +LVDTFP QSIDF+ ALR+R+YD +VR++
Sbjct: 174 EKFYWEPDRDDKVGIVGGIFAEDGLSQREVAQLVDTFPHQSIDFYSALRSRIYDQQVREF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I VG + +VNS E P F++P ++ L+ GN +V EQ+ V+ QL D+Y
Sbjct: 234 IHQVGFERVSSRIVNSAEKPPEFKKPDFSLSNLISAGNFMVGEQQRVETSQLVDEY 289
>gi|434404079|ref|YP_007146964.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
gi|428258334|gb|AFZ24284.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
Length = 415
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 150/282 (53%), Positives = 191/282 (67%), Gaps = 16/282 (5%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI +S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGIEVTQISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P+R+D++G+ GIF D ++ + +LVDTF QS+DFF ALR+R+YD+++R++
Sbjct: 174 EKFYWEPSRDDKVGIVGGIFAEDGLSQRQVEQLVDTFINQSVDFFSALRSRIYDEQIREF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I VG + +VNS E P F++P ++ L+E GN+IV EQ+ V+ L D Y
Sbjct: 234 IHQVGFERVSLRVVNSAEKPPEFKKPDFSLSHLIEAGNLIVGEQQRVETSHLVDDY---- 289
Query: 240 ALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTD----PTAEN 277
+ + G Y A+ PV + T+ P A N
Sbjct: 290 -------NRLNRGRSYQAASPAAETPVSQPSTNGFPKPEASN 324
>gi|158334944|ref|YP_001516116.1| ribulose bisphosphate carboxylase activase [Acaryochloris marina
MBIC11017]
gi|158305185|gb|ABW26802.1| Ribulose bisphosphate carboxylase activase, putative [Acaryochloris
marina MBIC11017]
Length = 416
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/240 (59%), Positives = 181/240 (75%), Gaps = 1/240 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI P+ MSAGELES +AG+P +LIR RYREAA++IK +GKMC L+INDLDAGAGRM T
Sbjct: 54 MGIEPVRMSAGELESPDAGDPVRLIRMRYREAAELIKVRGKMCVLLINDLDAGAGRMDQT 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VN TLMNIADNPT VQLPG Y+ + RVPI+VTGNDFSTLYAPL+RDGRM
Sbjct: 114 TQYTVNTQLVNGTLMNIADNPTDVQLPGSYDTQPIRRVPILVTGNDFSTLYAPLVRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
+KFYW P EDR+G+ +GIF D ++ I +LV+ F Q+IDFFGALR+R+YD++VR +
Sbjct: 174 DKFYWQPNHEDRLGIVQGIFEPDRLSSSVIEQLVNHFADQAIDFFGALRSRIYDEQVRDF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I +G+G++ LVNS E + P +T++ L+ G +V EQ+ + LA YLS A
Sbjct: 234 IRNLGIGNVSTYLVNSPERQVQIQPPALTLDYLINLGEAMVGEQDRLHHAGLAQAYLSGA 293
>gi|354567922|ref|ZP_08987089.1| ribulose bisphosphate carboxylase small chain [Fischerella sp.
JSC-11]
gi|353541596|gb|EHC11063.1| ribulose bisphosphate carboxylase small chain [Fischerella sp.
JSC-11]
Length = 415
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 152/269 (56%), Positives = 189/269 (70%), Gaps = 11/269 (4%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ +S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGVEVTHISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDPTPLHRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R+D+IG+ GIF D ++ +I +LVDTF QSIDFF ALR+R+YD+++R +
Sbjct: 174 EKFYWEPDRDDKIGIVGGIFSEDGLSQREIEQLVDTFLNQSIDFFSALRSRIYDEQIRDF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY---- 235
I VGV + + +VNS E P F +P + L+E GN++V EQ+ V QL +Y
Sbjct: 234 IYEVGVERVSRRVVNSLEGPPQFRKPNFNLSHLIEMGNVMVTEQQRVLTSQLVTEYNRGL 293
Query: 236 ----LSE--AALGEANEDAIQSGNFYGKA 258
LS+ A +AN+ GN Y K+
Sbjct: 294 YSRNLSQPTATPTQANQPVNNGGNGYHKS 322
>gi|414076620|ref|YP_006995938.1| ribulose bisphosphate carboxylase activase [Anabaena sp. 90]
gi|413970036|gb|AFW94125.1| ribulose bisphosphate carboxylase activase [Anabaena sp. 90]
Length = 407
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 140/236 (59%), Positives = 177/236 (75%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPLCRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
+KFYW P R+D++G+ GIF D ++ +I + VDTFP QSIDFF ALR+R+YD+++R +
Sbjct: 174 DKFYWEPNRDDKVGIVGGIFAEDGLSQKEIAQFVDTFPHQSIDFFSALRSRIYDEQIRHF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I +G ++ +VNS E P F++P T+ L+E G +V EQ+ V+ L D+Y
Sbjct: 234 IHKIGFENVSLRVVNSLEGPPAFKKPDFTLSHLIESGKFMVGEQKRVETSHLVDEY 289
>gi|427707439|ref|YP_007049816.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
gi|427359944|gb|AFY42666.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
Length = 415
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 143/273 (52%), Positives = 191/273 (69%), Gaps = 12/273 (4%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ ++S GELES +AG+PA+LIR RYRE A+ +K +G+MC LMINDLDAGAGR
Sbjct: 54 MGVEVTLISGGELESPDAGDPARLIRLRYRETAEQVKVRGRMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R++++G+ GIF D ++ ++ + VDTFP QSIDFF A+R+R+YD+++RK+
Sbjct: 174 EKFYWEPNRDEKVGIVGGIFVEDGLSSREVEQFVDTFPNQSIDFFSAVRSRIYDEQIRKF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I +G +I +VNS E PTF++P + L+E G+ +V EQ+ V+ QL D+Y
Sbjct: 234 IHEIGFENISLRVVNSVEGPPTFKKPNFNLSHLIESGHFMVGEQKRVENSQLVDEY---- 289
Query: 240 ALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTD 272
+ + G Y A ++ P+ + T+
Sbjct: 290 -------NRLNRGRSYQVAPPKVETPISQPSTN 315
>gi|359457374|ref|ZP_09245937.1| ribulose bisphosphate carboxylase small chain [Acaryochloris sp.
CCMEE 5410]
Length = 416
Score = 296 bits (757), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 141/240 (58%), Positives = 181/240 (75%), Gaps = 1/240 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI P+ MSAGELES +AG+P +LIR RYREAA++IK +GKMC L+INDLDAGA RM T
Sbjct: 54 MGIEPVRMSAGELESPDAGDPVRLIRMRYREAAELIKVRGKMCVLLINDLDAGASRMDQT 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VN TLMNIADNPT VQLPG Y+ + RVPI+VTGNDFSTLYAPL+RDGRM
Sbjct: 114 TQYTVNTQLVNGTLMNIADNPTDVQLPGSYDTQPIRRVPILVTGNDFSTLYAPLVRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
+KFYW P+ EDR+G+ +GIF D ++ I +LV+ F Q+IDFFGALR+R+YD++VR +
Sbjct: 174 DKFYWQPSDEDRLGIVQGIFEPDRLSSSVIEQLVNHFADQAIDFFGALRSRIYDEQVRDF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I +G+G++ LVNS E + P + ++ L+E G +V EQ+ + LA YLS A
Sbjct: 234 IRNLGIGNVSTYLVNSPERQVQIQPPALALDYLIELGEAMVGEQDRLHHAGLAQAYLSGA 293
>gi|434387097|ref|YP_007097708.1| ATP-dependent 26S proteasome regulatory subunit [Chamaesiphon
minutus PCC 6605]
gi|428018087|gb|AFY94181.1| ATP-dependent 26S proteasome regulatory subunit [Chamaesiphon
minutus PCC 6605]
Length = 302
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 184/237 (77%), Gaps = 2/237 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
M + I +SAGELES +AG+ A+LIR RYREAA+IIK +G+M L+IND+DAGAGR
Sbjct: 54 MKVEAIHISAGELESPDAGDSARLIRLRYREAAEIIKVRGRMAVLVINDIDAGAGRFDQG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIAD+PT VQLPG Y+ PR+PIIVTGND STLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADHPTNVQLPGSYDSTPLPRIPIIVTGNDLSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EK+YW PTRED+IG+ +GIF DN+++ +IV LVD FP +++DFF A+RAR+YD+++R +
Sbjct: 174 EKYYWVPTREDKIGIVRGIFAPDNISEREIVNLVDRFPDRAVDFFAAMRARIYDEQIRDF 233
Query: 180 ISGVGVGSIGKSLVNSKEA-APTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I VG+ + +VN PTF +P T+ +L+E+GN++VQEQ++V +L ++Y
Sbjct: 234 IHKVGLERLSIEVVNPASGIKPTFPKPYFTLARLIEFGNLLVQEQKSVDESRLVEEY 290
>gi|440681100|ref|YP_007155895.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
gi|428678219|gb|AFZ56985.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
Length = 414
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 141/236 (59%), Positives = 175/236 (74%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R+D++G+ GIF D + +I +LVDTF Q+IDFF +LR+R+YD ++R +
Sbjct: 174 EKFYWEPNRDDKVGIVGGIFAPDGFSQREIEELVDTFANQAIDFFSSLRSRIYDQQIRNF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I VG I K +VNS E P F++P + L+E G ++V EQ+ V+ L D+Y
Sbjct: 234 IHQVGFEQISKRVVNSLEGPPEFKKPNFNLSHLIESGKLMVGEQKRVETSHLVDEY 289
>gi|159885646|dbj|BAF93200.1| RuBisCO activase [Hordeum vulgare]
Length = 158
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 139/151 (92%), Positives = 146/151 (96%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 8 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 67
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 68 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRME 127
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVK 151
KFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK
Sbjct: 128 KFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 158
>gi|427736905|ref|YP_007056449.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
gi|427371946|gb|AFY55902.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
Length = 787
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 145/283 (51%), Positives = 193/283 (68%), Gaps = 7/283 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ +S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGVEVTHISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW PTRED++G+ GIF D ++ D+ +LVD F Q++DF+ ALR+R+YD+++R++
Sbjct: 174 EKFYWEPTREDKVGIIGGIFSEDGLSKQDVEQLVDHFGNQAVDFYSALRSRIYDEQIRRF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I GV + +VNS P+F++P+ + L+E +++V+EQ+ V L ++Y +
Sbjct: 234 IQNKGVDRVSSQVVNSNN-IPSFQKPKFGLSDLMEVASLMVEEQQRVDNSHLVEEY-NRG 291
Query: 240 ALGEANEDAIQSGN---FYGKAAQQMNVPVPEGCTDPTAENFD 279
AL Q+ + + + +P PTA NFD
Sbjct: 292 ALRHQKHFVPQAAPTPVYEARPTSHFDANLPTYQARPTA-NFD 333
>gi|427419082|ref|ZP_18909265.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
gi|425761795|gb|EKV02648.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
Length = 428
Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 145/281 (51%), Positives = 204/281 (72%), Gaps = 9/281 (3%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+N + +S GELES +AG+PA+LIR RYREAAD++K +G+M LMINDLDAGAGR G
Sbjct: 54 MGVNVVHISGGELESPDAGDPARLIRLRYREAADLVKIRGEMAVLMINDLDAGAGRFDGM 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VN TLMNIADNPT VQLPG Y++ PR+PI+VTGNDF+TLYAPL+RDGRM
Sbjct: 114 TQYTVNTQLVNNTLMNIADNPTNVQLPGSYDETPLPRIPIVVTGNDFATLYAPLVRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
+KFYW P R+DR+G+ GIF D+++ +DI LVDTFP Q+IDF+GALR+++YD+++ +
Sbjct: 174 QKFYWEPNRDDRLGIVGGIFSPDDLSRNDIETLVDTFPNQAIDFYGALRSQIYDEQIIDF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I VGV ++ +++VN+K P+F++P + L+E G +V+EQ ++ + L +Y
Sbjct: 234 IHRVGVENVSRNVVNTK-TPPSFKKPDFRIGHLIEVGQRLVREQRRLQEMGLVQEY--NQ 290
Query: 240 ALGEANEDAIQ-SGNFYGKAAQQMNVPV----PEGCTDPTA 275
AL + E+ +GN+Y +VP+ P G ++ A
Sbjct: 291 ALNKVEENRSNGNGNYYRAYQPAPSVPLQPVEPNGASNTPA 331
>gi|443478603|ref|ZP_21068337.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
gi|443016085|gb|ELS30823.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
Length = 297
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 140/237 (59%), Positives = 178/237 (75%), Gaps = 1/237 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
+GI PI MS GELES +AG+PA+LIR RYREAA+++K +GKMC L+INDLDAGAGR+ T
Sbjct: 54 LGIEPIRMSGGELESPDAGDPARLIRMRYREAAELVKVRGKMCALLINDLDAGAGRVDST 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPL+RDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTNVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLVRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKF+W P R DRIG+ GIF DN+ +I +LVD +P +SIDFFG+LR+ +YD++VRK+
Sbjct: 174 EKFFWMPDRTDRIGIVSGIFAPDNIPQWEIERLVDMYPDRSIDFFGSLRSSLYDEQVRKF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 236
+ +G+ + LVNS EA P F P + L E G+ ++ E + V + L +Y+
Sbjct: 234 VYDIGLERLSLRLVNSTEALPEFRPPSFDLRTLKEAGDRLLAEGDRVSQRNLIQEYM 290
>gi|86605146|ref|YP_473909.1| ribulose bisphosphate carboxylase/oxygenase activase [Synechococcus
sp. JA-3-3Ab]
gi|86553688|gb|ABC98646.1| ribulose bisphosphate carboxylase/oxygenase activase [Synechococcus
sp. JA-3-3Ab]
Length = 407
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 182/237 (76%), Gaps = 1/237 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
M + + +S GELES +AG+PA++IR RYREAA+ I+K G+M LMINDLDAGAGR+
Sbjct: 54 MKVYAVHISGGELESPDAGDPARMIRLRYREAAEHIRKFGQMAVLMINDLDAGAGRLNSM 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+V+ATLMNIADNPT VQLPG Y+ + PRVPII TGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVSATLMNIADNPTNVQLPGSYDPKPLPRVPIIATGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
KFYW P+R DRI + GIF+ D ++ ++I +LVD FP Q+IDFFGALRA++YD++V ++
Sbjct: 174 RKFYWEPSRTDRIHIVHGIFQADGLSLEEIERLVDAFPEQAIDFFGALRAQLYDEQVWQF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 236
I VG+ I L+ SKE AP F PR ++E+L++ G+ + EQ V+ +L+++YL
Sbjct: 234 IQEVGLEGIAFRLLKSKEGAPQFPPPRFSLEQLIQAGHQLKAEQHQVEARRLSEEYL 290
>gi|282898324|ref|ZP_06306315.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
gi|281196855|gb|EFA71760.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
Length = 362
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/236 (58%), Positives = 179/236 (75%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ ++S GELES +AG+PA+LIR RYRE A+++K +GKMC LMINDLDAGAGR
Sbjct: 1 MGVGVTLISGGELESPDAGDPARLIRLRYRETAELVKVRGKMCVLMINDLDAGAGRFDEG 60
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIAD+PT VQLPG Y+ + RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 61 TQYTVNTQLVNATLMNIADSPTDVQLPGSYDAKPIRRVPIIVTGNDFSTLYAPLIRDGRM 120
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P +D++G+ GIF D ++ +I +LV+TFP QSIDFF ALR+R+YD+++R +
Sbjct: 121 EKFYWEPNHDDKVGIVGGIFAEDGLSPVEIEQLVNTFPHQSIDFFSALRSRIYDEQIRDF 180
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I +G + +VNS E P F++P T+ L+E GN++V EQ++V+ L +Y
Sbjct: 181 IHEIGYDRVSMRVVNSMEPPPQFQKPEFTLFHLIEAGNVMVGEQKHVESSHLVAEY 236
>gi|298491099|ref|YP_003721276.1| ribulose bisphosphate carboxylase small chain ['Nostoc azollae'
0708]
gi|298233017|gb|ADI64153.1| ribulose bisphosphate carboxylase small chain ['Nostoc azollae'
0708]
Length = 408
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 142/269 (52%), Positives = 184/269 (68%), Gaps = 12/269 (4%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGIETTLISGGELESSDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIAD+PT VQLPG Y+ RVPIIVTGNDFSTLYAPL RDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADSPTDVQLPGSYDSNPTRRVPIIVTGNDFSTLYAPLTRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R+D++G+ GIF D + +I +LVD F QSIDFF LR+R+YD+++R++
Sbjct: 174 EKFYWEPNRDDKVGMVGGIFAEDALLQREIEQLVDNFAYQSIDFFSTLRSRIYDEQIREF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I +G ++ +VNS E P F++P ++ L++ G +V EQ+ V+ QL D+Y
Sbjct: 234 IHTIGFENVSSRVVNSAEGPPAFKRPNFSLSHLIDSGKFMVAEQKRVETSQLVDEY---- 289
Query: 240 ALGEANEDAIQSGNFYGKAAQQMNVPVPE 268
+ + G Y AA PV +
Sbjct: 290 -------NRLNRGKSYQPAASIAETPVSQ 311
>gi|119486453|ref|ZP_01620511.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
gi|119456355|gb|EAW37486.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
Length = 445
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 132/236 (55%), Positives = 176/236 (74%), Gaps = 2/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG P+ +S GELES +AG+P++LIR RYREA++ K +G+MC L IND+DAGAGR
Sbjct: 54 MGFEPVTISGGELESPDAGDPSRLIRLRYREASEQTKVRGQMCALFINDIDAGAGRFDSG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y++ R+PIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTNVQLPGSYDETPLQRIPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P ++R+ + +GIF+ + + DI+KLVD FP QS+DFF ALR+R+YD++++ +
Sbjct: 174 EKFYWEPNSKERVEIVEGIFQQE-LLKQDIIKLVDEFPEQSVDFFSALRSRIYDEQIQSF 232
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I +G+ I K +VNS E P F +P LLE G+ +V EQ ++ ++L ++Y
Sbjct: 233 IHQMGIEKISKRIVNSTEKPPEFNKPNFKFSHLLEMGHQMVAEQRRIQELRLVEEY 288
>gi|443316141|ref|ZP_21045597.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
gi|442784241|gb|ELR94125.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
Length = 461
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 141/247 (57%), Positives = 181/247 (73%), Gaps = 4/247 (1%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ + +S GELES +AG+PA+LIR RYREAA++++ +G M LMINDLDAGAGR
Sbjct: 54 MGVEVVAISGGELESPDAGDPARLIRLRYREAAELVRVRGVMAVLMINDLDAGAGRFDAL 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VN TLMNIADNPT VQLPG Y+ + RVPII TGNDFSTLY PL+RDGRM
Sbjct: 114 TQYTVNTQLVNNTLMNIADNPTNVQLPGSYDDQPIRRVPIIATGNDFSTLYEPLVRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R DRIG+ GIF D + I +LVDTF Q++DFFGALRAR+YD++VR +
Sbjct: 174 EKFYWMPDRSDRIGIVAGIFEPDQLGTAAIEQLVDTFSQQAVDFFGALRARIYDEQVRDF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
I VG+ + + +VNS E +PTF +P T+ L+E G +V EQ+ ++ ++L D+Y
Sbjct: 234 IQSVGLDKVSQRVVNS-ETSPTFTRPTFTLSHLIEVGQQMVIEQQWLQEMRLGDQY--NR 290
Query: 240 ALGEANE 246
AL E N+
Sbjct: 291 ALREKND 297
>gi|428210200|ref|YP_007094553.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
gi|428012121|gb|AFY90684.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
Length = 475
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 129/223 (57%), Positives = 173/223 (77%), Gaps = 1/223 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI +S GELES +AG+P++L+R RYRE A++I+ +GKMC +MINDLDAGAGR
Sbjct: 54 MGIEITHISGGELESPDAGDPSRLLRLRYRETAELIRVRGKMCAIMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y++ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTNVQLPGSYDETPLHRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R D++G+ GI+ +D ++ +I +LVDTF QS+DFF ALR+R+YD+++R +
Sbjct: 174 EKFYWQPDRSDKVGIVAGIYSDDGLSSREIEQLVDTFSNQSVDFFSALRSRIYDEQIRDF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQE 222
I +G+ + + +VNS + P F +P+ + +L+E GN++V+E
Sbjct: 234 IFKIGIEQVSRRVVNSADRPPEFSKPKFNLSRLIEMGNLMVKE 276
>gi|254422770|ref|ZP_05036488.1| ribulose bisphosphate carboxylase, small subunit, putative
[Synechococcus sp. PCC 7335]
gi|196190259|gb|EDX85223.1| ribulose bisphosphate carboxylase, small subunit, putative
[Synechococcus sp. PCC 7335]
Length = 455
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 127/236 (53%), Positives = 182/236 (77%), Gaps = 2/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ + +S GELES +AG+PA+LIR RYREAA++++ +G+M LMINDLDAGAGR
Sbjct: 54 MGVEVVHISGGELESPDAGDPARLIRLRYREAAELVRVRGRMAVLMINDLDAGAGRFDRM 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VN TLMNIADNPT VQLPG Y+++ PR+PII TGNDF+TLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNNTLMNIADNPTNVQLPGSYDEKALPRIPIIATGNDFATLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
+KFYW P+ EDR+G+ G+F D ++ +DI +LV F Q++DFFGA+R+++YD+++ ++
Sbjct: 174 QKFYWQPSEEDRVGIVGGMFAGDGLSAEDIEQLVKQFKDQAVDFFGAVRSQLYDEQITRF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I VG+ + ++VN+ + PTF +P T++ L+ GN +V+EQ+ V+ + L ++Y
Sbjct: 234 IEQVGIEKVATNVVNTPQ-KPTFNRPHFTLDHLVAAGNTLVEEQDRVRTMGLVNEY 288
>gi|254416331|ref|ZP_05030084.1| ribulose bisphosphate carboxylase, small subunit, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176769|gb|EDX71780.1| ribulose bisphosphate carboxylase, small subunit, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 447
Score = 280 bits (715), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 133/225 (59%), Positives = 169/225 (75%), Gaps = 1/225 (0%)
Query: 12 ELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVN 70
ELES +AG+PA+LIR RYREAA++IK +GKMC LMINDLDAG GR TTQYTVN Q+V+
Sbjct: 70 ELESPDAGDPARLIRLRYREAAEMIKVQGKMCGLMINDLDAGVGRFDSTTQYTVNTQLVS 129
Query: 71 ATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 130
ATLMNIAD+PT VQLPG Y+ RVPIIVTGNDFSTLYAPLIR+GRMEK+YW P+RE+
Sbjct: 130 ATLMNIADHPTDVQLPGSYDANPLHRVPIIVTGNDFSTLYAPLIREGRMEKYYWEPSREE 189
Query: 131 RIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGK 190
RIG+ GIF D + DI +LVD FP Q+IDFF ALR+R+YD ++ +I VG+ +
Sbjct: 190 RIGIVGGIFAADGLPRRDIEQLVDQFPDQAIDFFSALRSRIYDQQILHFIHDVGLDQVSF 249
Query: 191 SLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
+V S EA P FE+P + L+E+G +++ EQ V++ L +Y
Sbjct: 250 RVVRSTEAPPEFEKPNFDISHLIEFGQVMIGEQRQVEQTGLVREY 294
>gi|428215450|ref|YP_007088594.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
gi|428003831|gb|AFY84674.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
Length = 435
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/236 (57%), Positives = 171/236 (72%), Gaps = 2/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGKMCCLMINDLDAGAGRMGGT 59
M + I +SAGELES +AG+P++L+R RYREAADII K GK+ LMIND+DAGAGR+
Sbjct: 54 MKVQAIHLSAGELESPDAGDPSRLVRFRYREAADIITKHGKLAVLMINDIDAGAGRVDSG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ E PRVPIIVTGNDF TLYAPL+RDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTNVQLPGSYDSEPLPRVPIIVTGNDFGTLYAPLVRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
+KFYW P REDR+ + GIF D + I +LV F GQSIDFF ALRA +YD+++ +
Sbjct: 174 DKFYWEPNREDRLEIVNGIFTPDGLNRQQIEQLVSKFEGQSIDFFSALRASIYDEQILAF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I G IG + NS E +F +P +E L+E G +V+EQ++++ ++L Y
Sbjct: 234 IEQTGFDKIGLKVANSTEKH-SFIKPDFRLEHLIEKGEQMVKEQQHIQELRLVAAY 288
>gi|149941212|emb|CAO02538.1| putative rubisco activase [Vigna unguiculata]
Length = 194
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 131/139 (94%), Positives = 135/139 (97%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGR+GGTT
Sbjct: 56 MGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTT 115
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 116 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAPLIRDGRME 175
Query: 121 KFYWAPTREDRIGVCKGIF 139
KFYWAPTR+DR+GVCKGIF
Sbjct: 176 KFYWAPTRDDRVGVCKGIF 194
>gi|169635155|gb|ACA58354.1| rubisco activase 2 [Arachis diogoi]
Length = 160
Score = 263 bits (672), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 144/159 (90%)
Query: 135 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVN 194
C GIFR DNV +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+SGVGV +GK LVN
Sbjct: 2 CTGIFRTDNVPPEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGVDGVGKKLVN 61
Query: 195 SKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 254
SKE PTFEQP+MT+ KLLEYGNM+VQEQENVKRVQLADKYL+EAALG+AN+DAI+SG+F
Sbjct: 62 SKEGPPTFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYLNEAALGDANQDAIKSGSF 121
Query: 255 YGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
YGKAAQQ+ VPVPEGCTDP A NFDPTARSDDG+C YT
Sbjct: 122 YGKAAQQIGVPVPEGCTDPNASNFDPTARSDDGTCLYTF 160
>gi|149941208|emb|CAO02536.1| putative rubisco activase [Vigna unguiculata]
Length = 214
Score = 263 bits (671), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 126/134 (94%), Positives = 130/134 (97%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGR+GGTT
Sbjct: 81 MGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTT 140
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 141 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAPLIRDGRME 200
Query: 121 KFYWAPTREDRIGV 134
KFYWAPTR+DR+GV
Sbjct: 201 KFYWAPTRDDRVGV 214
>gi|117661805|gb|ABK55669.1| chloroplast rubisco activase [Cucumis sativus]
Length = 150
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 125/129 (96%), Positives = 127/129 (98%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGR+GGTT
Sbjct: 22 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTT 81
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+
Sbjct: 82 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMD 141
Query: 121 KFYWAPTRE 129
KFYWAPTRE
Sbjct: 142 KFYWAPTRE 150
>gi|224057192|ref|XP_002299165.1| predicted protein [Populus trichocarpa]
gi|222846423|gb|EEE83970.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 174/241 (72%), Gaps = 6/241 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
+G+ P++MSAGELES AGEP +LIR+RYR A+ +++ +GKM CLMINDLDAG GR G
Sbjct: 184 LGVEPVIMSAGELESERAGEPGRLIRERYRTASQVVQNQGKMSCLMINDLDAGLGRFG-N 242
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN++DNPT V + + + + RVPIIVTGNDFST+YAPLIRDGR
Sbjct: 243 TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRVPIIVTGNDFSTIYAPLIRDGR 302
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
MEKFYW P RED + + ++ D ++ D++V +V+ FP Q++DF+GALR+R YD + K
Sbjct: 303 MEKFYWQPNREDIVNIVHRMYEKDGISRDEVVSIVNKFPNQALDFYGALRSRTYDRSISK 362
Query: 179 WISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
W+ + G+ ++GK L+ K E P F P TME LLE G+ +++EQ+ + +L+ +Y
Sbjct: 363 WVDDIGGIENLGKQLLRRKKDEKLPEFTPPEQTMEALLESGHSLIREQQLIMETKLSKEY 422
Query: 236 L 236
+
Sbjct: 423 M 423
>gi|242077492|ref|XP_002448682.1| hypothetical protein SORBIDRAFT_06g031390 [Sorghum bicolor]
gi|241939865|gb|EES13010.1| hypothetical protein SORBIDRAFT_06g031390 [Sorghum bicolor]
Length = 433
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/241 (52%), Positives = 172/241 (71%), Gaps = 6/241 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GK+ CLMINDLDAG GR G
Sbjct: 190 MGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKLSCLMINDLDAGVGRFG-N 248
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+ TLMN+ADNP V + + + + RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 249 TQMTVNNQIAVGTLMNLADNPNRVSIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGR 308
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
MEKFYW PTRED I + G++R D ++ +++ ++VDTFP Q++DF+GALR+R YD + +
Sbjct: 309 MEKFYWQPTREDIISIVHGMYRKDGLSAEEVARVVDTFPNQALDFYGALRSRTYDRAILE 368
Query: 179 WISGVGVG-SIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
W+ +G + L+ K E PTF P+ ++E L+E G +V+EQE + +L+ +Y
Sbjct: 369 WVEEIGGHEQLRAKLLKRKKGEELPTFIAPKPSLEALIESGYSLVKEQELIMNSKLSKEY 428
Query: 236 L 236
+
Sbjct: 429 M 429
>gi|168812226|gb|ACA30289.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase
alpha 2 [Cupressus sempervirens]
Length = 145
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 120/145 (82%), Positives = 134/145 (92%)
Query: 90 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDI 149
NKE+NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIFR DN++D I
Sbjct: 1 NKEDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDNISDAAI 60
Query: 150 VKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTM 209
VK+VD+FPGQSI+FFGALRARVYDDEVRKWI VGV IGK LVNS++ PTFE+P MT+
Sbjct: 61 VKIVDSFPGQSINFFGALRARVYDDEVRKWIGEVGVEGIGKKLVNSRDGPPTFEKPAMTV 120
Query: 210 EKLLEYGNMIVQEQENVKRVQLADK 234
EKLLEYGNM+V+EQENVKRVQLADK
Sbjct: 121 EKLLEYGNMLVKEQENVKRVQLADK 145
>gi|156106226|gb|ABU49419.1| rubisco activase [Camellia sinensis]
Length = 139
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 122/134 (91%), Positives = 126/134 (94%)
Query: 11 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVN 70
GELESGNAGEPAKLIRQRYREA+DII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVN
Sbjct: 4 GELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN 63
Query: 71 ATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 130
ATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEK +WAP RED
Sbjct: 64 ATLMNIADNPTSVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKLHWAPNRED 123
Query: 131 RIGVCKGIFRNDNV 144
RIGVC GIFR DN
Sbjct: 124 RIGVCMGIFRTDNC 137
>gi|449436220|ref|XP_004135891.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
Length = 426
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 125/242 (51%), Positives = 174/242 (71%), Gaps = 8/242 (3%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CLMIND+DAG GR G
Sbjct: 182 MGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFG-Q 240
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN--PRVPIIVTGNDFSTLYAPLIRDG 117
TQ TVNNQ+V+ TLMN+ADNPT V + G +E + R+PII+TGNDFST+YAPLIRDG
Sbjct: 241 TQVTVNNQIVSGTLMNLADNPTRVSI-GQDWREADILHRIPIILTGNDFSTIYAPLIRDG 299
Query: 118 RMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 177
RMEKFYW P RED + + ++ D ++ +V +V+TFP Q++DF+GALR+R YD +
Sbjct: 300 RMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNTFPNQALDFYGALRSRTYDSAIS 359
Query: 178 KWISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADK 234
KW+ + GV +G+ L+ + E PTF P T+E LL+ G +V+EQ+ + +L+ +
Sbjct: 360 KWVDDIGGVEKLGEKLLRRRKSEKLPTFTPPEQTLEALLKAGYSLVKEQQLIMETKLSKE 419
Query: 235 YL 236
Y+
Sbjct: 420 YM 421
>gi|225443213|ref|XP_002270825.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Vitis vinifera]
Length = 442
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 173/241 (71%), Gaps = 6/241 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CLMIND+DAG GR G
Sbjct: 198 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFG-N 256
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+ TLMN++DNPT V + + + + RVPIIVTGNDFST+YAPLIRDGR
Sbjct: 257 TQVTVNNQIAVGTLMNLSDNPTRVSIGQDWRETDITNRVPIIVTGNDFSTIYAPLIRDGR 316
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
M+KFYW PT ED I + ++ D ++ D +V++VDTFP Q++DF+GALR+R YD + K
Sbjct: 317 MDKFYWQPTHEDIINIVDRMYEKDGISRDAVVRIVDTFPNQALDFYGALRSRTYDRSISK 376
Query: 179 WISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
W+ + GV ++G L+ + E P F P+ T++ LLE G +++EQ+ + +L+ +Y
Sbjct: 377 WVDDIGGVENLGNKLLRRRKDEKLPVFVPPKQTIDALLESGYSLIKEQQLIMETKLSKEY 436
Query: 236 L 236
+
Sbjct: 437 M 437
>gi|298204740|emb|CBI25238.3| unnamed protein product [Vitis vinifera]
Length = 440
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 173/241 (71%), Gaps = 6/241 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CLMIND+DAG GR G
Sbjct: 196 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFG-N 254
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+ TLMN++DNPT V + + + + RVPIIVTGNDFST+YAPLIRDGR
Sbjct: 255 TQVTVNNQIAVGTLMNLSDNPTRVSIGQDWRETDITNRVPIIVTGNDFSTIYAPLIRDGR 314
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
M+KFYW PT ED I + ++ D ++ D +V++VDTFP Q++DF+GALR+R YD + K
Sbjct: 315 MDKFYWQPTHEDIINIVDRMYEKDGISRDAVVRIVDTFPNQALDFYGALRSRTYDRSISK 374
Query: 179 WISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
W+ + GV ++G L+ + E P F P+ T++ LLE G +++EQ+ + +L+ +Y
Sbjct: 375 WVDDIGGVENLGNKLLRRRKDEKLPVFVPPKQTIDALLESGYSLIKEQQLIMETKLSKEY 434
Query: 236 L 236
+
Sbjct: 435 M 435
>gi|116310848|emb|CAH67790.1| OSIGBa0132E09-OSIGBa0108L24.4 [Oryza sativa Indica Group]
Length = 441
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 128/245 (52%), Positives = 171/245 (69%), Gaps = 14/245 (5%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMINDLDAG GR G
Sbjct: 197 MGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDLDAGVGRFG-N 255
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN+ADNPT V + + + + RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 256 TQMTVNNQIVIGTLMNLADNPTRVSIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGR 315
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
MEKFYW P RED I + ++ D ++ +D+ K+VDTFP Q++DF+GALR+R YD + +
Sbjct: 316 MEKFYWQPDREDIINIVHRMYIKDGLSFEDVSKIVDTFPNQALDFYGALRSRTYDRAILQ 375
Query: 179 WISGVGVGSIGKSLVNSK-------EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 231
W+ +G G +N K E PTF P+ T++ L+E G+ +V+EQE + +L
Sbjct: 376 WVEEIG----GHEQLNEKLLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKL 431
Query: 232 ADKYL 236
+ +Y+
Sbjct: 432 SKEYM 436
>gi|47176692|gb|AAT12492.1| putative RuBisCo activase protein [Zantedeschia hybrid cultivar]
Length = 244
Score = 254 bits (648), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 122/240 (50%), Positives = 170/240 (70%), Gaps = 6/240 (2%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTT 60
GI PI+MSAGELES NAGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G T
Sbjct: 1 GIEPIIMSAGELESENAGEPGRLIRERYRTASQVVQNQGKMSCLTINDIDAGLGRFGNT- 59
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRM 119
Q TVNNQ+ TLMN++DNPT V + + + + R+P+IVTGNDFSTLYAPLIRDGRM
Sbjct: 60 QVTVNNQIAVGTLMNLSDNPTRVSIGQKWRESDVTHRIPVIVTGNDFSTLYAPLIRDGRM 119
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW PT ED I + + ++ D ++ D + +VD+FP Q++DF+GALR+R YD KW
Sbjct: 120 EKFYWQPTHEDIINIVQRMYEKDGISRDAVESIVDSFPNQALDFYGALRSRTYDKSTLKW 179
Query: 180 ISGV-GVGSIGKSLVNSKEAA--PTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 236
I + G ++ L+ ++ PTF P+ T+E LLE G+ +++EQE + +L+ +Y+
Sbjct: 180 IDEIGGYENLSDKLLRERKEGKLPTFVPPKQTLEALLESGHSLIEEQELIMNTKLSKEYM 239
>gi|115461056|ref|NP_001054128.1| Os04g0658300 [Oryza sativa Japonica Group]
gi|38346401|emb|CAE04234.2| OSJNBa0011F23.7 [Oryza sativa Japonica Group]
gi|113565699|dbj|BAF16042.1| Os04g0658300 [Oryza sativa Japonica Group]
Length = 441
Score = 254 bits (648), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 128/245 (52%), Positives = 171/245 (69%), Gaps = 14/245 (5%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMINDLDAG GR G
Sbjct: 197 MGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDLDAGVGRFG-N 255
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN+ADNPT V + + + + RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 256 TQMTVNNQIVIGTLMNLADNPTRVSIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGR 315
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
MEKFYW P RED I + ++ D ++ +D+ K+VDTFP Q++DF+GALR+R YD + +
Sbjct: 316 MEKFYWQPGREDIINIVHRMYIKDGLSFEDVSKVVDTFPNQALDFYGALRSRTYDRAILQ 375
Query: 179 WISGVGVGSIGKSLVNSK-------EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 231
W+ +G G +N K E PTF P+ T++ L+E G+ +V+EQE + +L
Sbjct: 376 WVEEIG----GHEQLNEKLLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKL 431
Query: 232 ADKYL 236
+ +Y+
Sbjct: 432 SKEYM 436
>gi|5903100|gb|AAD55658.1|AC008017_31 Highly similar to ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Arabidopsis thaliana]
Length = 245
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 169/241 (70%), Gaps = 6/241 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMIND+DAG GR G
Sbjct: 1 MGVEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRFG-E 59
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP-RVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN+ADNPT V + + + + RVP+IVTGNDFSTLYAPLIR+GR
Sbjct: 60 TQMTVNNQIVVGTLMNLADNPTRVSVGQEWREADMVNRVPLIVTGNDFSTLYAPLIREGR 119
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
MEKFYW PTRED + + ++ D ++ D++ +VD FP Q++DF+GALR+R YD + K
Sbjct: 120 MEKFYWQPTREDIVNIVSRMYEKDGISRKDVISIVDKFPNQALDFYGALRSRTYDRSILK 179
Query: 179 WISGV-GVGSIGKSLVNSKEA--APTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
W+ G+ ++GK L+ K+ P F P T+E LLE G ++ EQ+ + +L+ +Y
Sbjct: 180 WVDEAGGMETLGKVLLRRKKTQEVPQFTAPEQTVEALLESGYSLINEQKLIMETKLSKEY 239
Query: 236 L 236
+
Sbjct: 240 M 240
>gi|297842049|ref|XP_002888906.1| hypothetical protein ARALYDRAFT_476441 [Arabidopsis lyrata subsp.
lyrata]
gi|297334747|gb|EFH65165.1| hypothetical protein ARALYDRAFT_476441 [Arabidopsis lyrata subsp.
lyrata]
Length = 419
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 170/241 (70%), Gaps = 6/241 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMIND+DAG GR G
Sbjct: 175 MGVEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRFG-E 233
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP-RVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN+ADNPT V + + + + RVP+IVTGNDFSTLYAPLIR+GR
Sbjct: 234 TQMTVNNQIVVGTLMNLADNPTRVSVGQEWREADIVNRVPLIVTGNDFSTLYAPLIREGR 293
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
MEKFYW PTRED + + ++ D ++ D++ +VD FP Q++DF+GALR+R YD + K
Sbjct: 294 MEKFYWQPTREDIVNIVSRMYEKDGISRKDVISIVDKFPNQALDFYGALRSRTYDRSILK 353
Query: 179 WISGV-GVGSIGKSLVNSKEA--APTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
W+ G+ ++GK L+ SK+ P F P T+E LLE G ++ EQ+ + +L+ +Y
Sbjct: 354 WVDEAGGMETLGKILLRSKKTKEVPQFTPPEQTVEALLESGYSLINEQKLIMETKLSKEY 413
Query: 236 L 236
+
Sbjct: 414 M 414
>gi|255543431|ref|XP_002512778.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative [Ricinus communis]
gi|223547789|gb|EEF49281.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative [Ricinus communis]
Length = 428
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 121/241 (50%), Positives = 169/241 (70%), Gaps = 6/241 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CLMIND+DAG GR G
Sbjct: 184 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-N 242
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN+ DNPT V + + + R+PIIVTGNDFST+YAPLIRDGR
Sbjct: 243 TQMTVNNQIVVGTLMNLVDNPTRVSTGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGR 302
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
MEKF+W P +ED + + ++ D ++ D++V +V TFP Q++DF+GALR+R YD + K
Sbjct: 303 MEKFFWQPNQEDIVNIVHRMYEKDGISRDEVVSIVKTFPNQALDFYGALRSRTYDMSISK 362
Query: 179 WISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
WI + GV ++G L+ + E P + P T+E L E G +++EQ+ + +L+ +Y
Sbjct: 363 WIDDIGGVENLGNKLLKRRKNETLPVYTPPEQTVEALFESGYSLIREQQLIMETKLSKEY 422
Query: 236 L 236
+
Sbjct: 423 M 423
>gi|15219376|ref|NP_177454.1| putative Rubisco activase 2 [Arabidopsis thaliana]
gi|13605706|gb|AAK32846.1|AF361834_1 At1g73110/F3N23_39 [Arabidopsis thaliana]
gi|18700270|gb|AAL77745.1| At1g73110/F3N23_39 [Arabidopsis thaliana]
gi|26452888|dbj|BAC43522.1| unknown protein [Arabidopsis thaliana]
gi|332197294|gb|AEE35415.1| putative Rubisco activase 2 [Arabidopsis thaliana]
Length = 432
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 169/241 (70%), Gaps = 6/241 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMIND+DAG GR G
Sbjct: 188 MGVEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRFG-E 246
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP-RVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN+ADNPT V + + + + RVP+IVTGNDFSTLYAPLIR+GR
Sbjct: 247 TQMTVNNQIVVGTLMNLADNPTRVSVGQEWREADMVNRVPLIVTGNDFSTLYAPLIREGR 306
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
MEKFYW PTRED + + ++ D ++ D++ +VD FP Q++DF+GALR+R YD + K
Sbjct: 307 MEKFYWQPTREDIVNIVSRMYEKDGISRKDVISIVDKFPNQALDFYGALRSRTYDRSILK 366
Query: 179 WISGV-GVGSIGKSLVNSKEA--APTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
W+ G+ ++GK L+ K+ P F P T+E LLE G ++ EQ+ + +L+ +Y
Sbjct: 367 WVDEAGGMETLGKVLLRRKKTQEVPQFTAPEQTVEALLESGYSLINEQKLIMETKLSKEY 426
Query: 236 L 236
+
Sbjct: 427 M 427
>gi|356550687|ref|XP_003543716.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 428
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/241 (50%), Positives = 173/241 (71%), Gaps = 6/241 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CLMIND+DAG GR G
Sbjct: 184 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-N 242
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN++DNPT V + + + + R+PIIVTGNDFSTLYAPLIRDGR
Sbjct: 243 TQMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNRIPIIVTGNDFSTLYAPLIRDGR 302
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
M+KFYW P +ED + + ++ D+++ D++ ++V+TFP Q++DF+GALR+R YD + K
Sbjct: 303 MDKFYWQPNQEDILNIVHRMYEKDSISRDEVERVVNTFPNQALDFYGALRSRTYDRSILK 362
Query: 179 WISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
WI + GV + G L+ + ++ P F P T++ LLE G +++EQ + +L+ +Y
Sbjct: 363 WIDDIGGVENFGNKLLKRRKDQSLPVFIPPEQTVDALLESGYSLIKEQRLIMETKLSKEY 422
Query: 236 L 236
+
Sbjct: 423 M 423
>gi|71834884|gb|AAZ41846.1| Rubisco activase 2 [Mesembryanthemum crystallinum]
Length = 456
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 170/241 (70%), Gaps = 6/241 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGE+ES AGEP +LIR+RYR A+ +++ GK+ CLMINDLDAG GR G
Sbjct: 212 MGVEPVIMSAGEMESEKAGEPGRLIRERYRAASQVVQNHGKLSCLMINDLDAGIGRFG-N 270
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP-RVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ TLMN+ADNPT V + + + + R+P+IVTGNDFST+YAPLIRDGR
Sbjct: 271 TQVTVNNQTAAGTLMNLADNPTRVSIGQKWRENDTTHRIPVIVTGNDFSTIYAPLIRDGR 330
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
M+KFYW PT +D + + ++ D ++ D++V +V+TFP Q++DF+GA+R+R YD V K
Sbjct: 331 MDKFYWQPTHDDIVNIVHRMYEKDGISWDEVVSIVNTFPNQALDFYGAMRSRTYDRSVLK 390
Query: 179 WISGV-GVGSIGKSLVNSKEA--APTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
W+ + G+ ++G L+ ++ P F P +E LLE G +++EQ+ + + +LA +Y
Sbjct: 391 WVDDIGGIDNLGAKLLQLRKGDELPVFVPPEQNVEALLESGYSLLREQQLINKTKLAKEY 450
Query: 236 L 236
+
Sbjct: 451 M 451
>gi|449491096|ref|XP_004158798.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
Length = 427
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 172/243 (70%), Gaps = 9/243 (3%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CLMIND+DAG GR G
Sbjct: 182 MGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFG-Q 240
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN--PRVPIIVTGNDFSTLYAPLIRDG 117
TQ TVNNQ+V+ TLMN+ADNPT V + G +E + R+PII+TGNDFST+YAPLIRDG
Sbjct: 241 TQVTVNNQIVSGTLMNLADNPTRVSI-GQDWREADILHRIPIILTGNDFSTIYAPLIRDG 299
Query: 118 RMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ-SIDFFGALRARVYDDEV 176
RMEKFYW P RED + + ++ D ++ +V +V+TFP Q + F+GALR+R YD +
Sbjct: 300 RMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNTFPNQGNFGFYGALRSRTYDSAI 359
Query: 177 RKWISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLAD 233
KW+ + GV +G+ L+ + E PTF P T+E LL+ G +V+EQ+ + +L+
Sbjct: 360 SKWVDDIGGVEKLGEKLLRRRKSEKLPTFTPPEQTLEALLKAGYSLVKEQQLIMETKLSK 419
Query: 234 KYL 236
+Y+
Sbjct: 420 EYM 422
>gi|388517903|gb|AFK47013.1| unknown [Lotus japonicus]
Length = 421
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 120/241 (49%), Positives = 171/241 (70%), Gaps = 6/241 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGELES AGEP +LIR+RYR A+ +++ +GKM CLMIND+DAG GR G
Sbjct: 177 MGMEPVIMSAGELESERAGEPGRLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-N 235
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN++DNPT V + + + + R+PIIVTGNDFST+YAPLIRDGR
Sbjct: 236 TQMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGR 295
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
M+KFYW P RED + ++ D ++ D++ ++VDTFP Q++DF+GALR+R YD + K
Sbjct: 296 MDKFYWQPNREDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILK 355
Query: 179 WISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
W+ + GV + G ++ + + P F P T++ LLE G +++EQE V +L+ +Y
Sbjct: 356 WVDDIGGVENFGTKILKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEY 415
Query: 236 L 236
+
Sbjct: 416 M 416
>gi|357166474|ref|XP_003580722.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Brachypodium distachyon]
Length = 437
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 169/241 (70%), Gaps = 6/241 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM CLMINDLDAG GR G
Sbjct: 193 MGVEPVIMSAGELESERAGEPGRLIRDRYRTASQVIQNQGKMSCLMINDLDAGVGRFG-N 251
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN+ADNPT V + + + + RVPII TGNDFSTLYAPLIRDGR
Sbjct: 252 TQMTVNNQIVVGTLMNLADNPTRVSIGQKWRESDITHRVPIIATGNDFSTLYAPLIRDGR 311
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
MEKFYW P RED I + ++ D ++ +++ ++VDTFP Q++DF+GALR+R YD + +
Sbjct: 312 MEKFYWQPDREDIINIVHRMYMKDGLSFEEVSRIVDTFPNQALDFYGALRSRTYDQAILQ 371
Query: 179 WISGVG---VGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
W++ +G +E PTF P+ T++ L+E G+ +V+EQE + +L+ +Y
Sbjct: 372 WVNDIGGYEQLGEKLLKKKKREKLPTFIPPKPTLDALIESGDSLVKEQELIMNSKLSKEY 431
Query: 236 L 236
+
Sbjct: 432 M 432
>gi|6967045|emb|CAB72439.1| rubisco activase [Pinus halepensis]
Length = 226
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 115/124 (92%), Positives = 120/124 (96%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GINPIMMSAGELESG+AGEPAKLIR+RYREAADI+KKGKMC L INDLDAGAGRMG TT
Sbjct: 103 LGINPIMMSAGELESGDAGEPAKLIRKRYREAADIVKKGKMCVLFINDLDAGAGRMGSTT 162
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 163 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRME 222
Query: 121 KFYW 124
KFYW
Sbjct: 223 KFYW 226
>gi|218195741|gb|EEC78168.1| hypothetical protein OsI_17750 [Oryza sativa Indica Group]
Length = 456
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 127/256 (49%), Positives = 172/256 (67%), Gaps = 21/256 (8%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMINDLDAG GR G
Sbjct: 197 MGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDLDAGVGRFG-N 255
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN+ADNPT V + + + + RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 256 TQMTVNNQIVIGTLMNLADNPTRVSIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGR 315
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
MEKFYW P RED I + ++ D ++ +D+ K+VDTFP Q++DF+GALR+R YD + +
Sbjct: 316 MEKFYWQPDREDIINIVHRMYIKDGLSFEDVSKIVDTFPNQALDFYGALRSRTYDRAILQ 375
Query: 179 ---------------WISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIV 220
W+ + G + + L+ K E PTF P+ T++ L+E G+ +V
Sbjct: 376 LLKMYFFANTVEDVLWVEEIGGHEQLNEKLLKRKKGEELPTFIPPKTTVDALIESGDSLV 435
Query: 221 QEQENVKRVQLADKYL 236
+EQE + +L+ +Y+
Sbjct: 436 KEQELIMNSKLSKEYM 451
>gi|19387266|gb|AAL87177.1|AF480497_5 putative rubisco activase [Oryza sativa Japonica Group]
Length = 435
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 128/260 (49%), Positives = 171/260 (65%), Gaps = 29/260 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMINDLDAG GR G
Sbjct: 176 MGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDLDAGVGRFG-N 234
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN+ADNPT V + + + + RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 235 TQMTVNNQIVIGTLMNLADNPTRVSIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGR 294
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
MEKFYW P RED I + ++ D ++ +D+ K+VDTFP Q++DF+GALR+R YD + +
Sbjct: 295 MEKFYWQPGREDIINIVHRMYIKDGLSFEDVSKVVDTFPNQALDFYGALRSRTYDRAILQ 354
Query: 179 ---------------WISGVGVGSIGKSLVNSK-------EAAPTFEQPRMTMEKLLEYG 216
W+ +G G +N K E PTF P+ T++ L+E G
Sbjct: 355 LLKMYFFANTVEDVLWVEEIG----GHEQLNEKLLKRKKGEELPTFIPPKTTVDALIESG 410
Query: 217 NMIVQEQENVKRVQLADKYL 236
+ +V+EQE + +L+ +Y+
Sbjct: 411 DSLVKEQELIMNSKLSKEYM 430
>gi|222629697|gb|EEE61829.1| hypothetical protein OsJ_16474 [Oryza sativa Japonica Group]
Length = 456
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 128/260 (49%), Positives = 171/260 (65%), Gaps = 29/260 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMINDLDAG GR G
Sbjct: 197 MGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDLDAGVGRFG-N 255
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN+ADNPT V + + + + RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 256 TQMTVNNQIVIGTLMNLADNPTRVSIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGR 315
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
MEKFYW P RED I + ++ D ++ +D+ K+VDTFP Q++DF+GALR+R YD + +
Sbjct: 316 MEKFYWQPGREDIINIVHRMYIKDGLSFEDVSKVVDTFPNQALDFYGALRSRTYDRAILQ 375
Query: 179 ---------------WISGVGVGSIGKSLVNSK-------EAAPTFEQPRMTMEKLLEYG 216
W+ +G G +N K E PTF P+ T++ L+E G
Sbjct: 376 LLKMYFFANTVEDVLWVEEIG----GHEQLNEKLLKRKKGEELPTFIPPKTTVDALIESG 431
Query: 217 NMIVQEQENVKRVQLADKYL 236
+ +V+EQE + +L+ +Y+
Sbjct: 432 DSLVKEQELIMNSKLSKEYM 451
>gi|168063726|ref|XP_001783820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664649|gb|EDQ51360.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 458
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/244 (50%), Positives = 170/244 (69%), Gaps = 7/244 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI PI+MSAGE+ES AGEP KLIR+RYR A +I +GKM CLMINDLDAG GR
Sbjct: 203 MGIEPIIMSAGEMESEWAGEPGKLIRERYRAAHLVINNQGKMSCLMINDLDAGIGRFE-N 261
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQMV TLMN+ADNP V + + + + RVPIIVTGNDFST++APLIRDGR
Sbjct: 262 TQMTVNNQMVVGTLMNLADNPNRVSVGQAWREADIVNRVPIIVTGNDFSTIWAPLIRDGR 321
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
M+KFYW PTR+D + + +++ D +++ DI ++DTFP Q++DF+GALR+R YD V +
Sbjct: 322 MDKFYWQPTRDDLVKIVYQMYKKDGLSEADIGFIIDTFPNQALDFYGALRSRTYDKHVLE 381
Query: 179 WISGV-GVGSIGKSLVNSKEA---APTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADK 234
W++ + G IG L+ K+ P F P ++ L++ G +V+EQ V ++L+D+
Sbjct: 382 WVNEIGGAEQIGPKLLRRKKGDAPLPEFIAPEQNVDDLIKAGYELVEEQNMVNNMKLSDE 441
Query: 235 YLSE 238
Y+ +
Sbjct: 442 YMKK 445
>gi|388512327|gb|AFK44225.1| unknown [Medicago truncatula]
Length = 418
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 168/241 (69%), Gaps = 6/241 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGELES NAGEP +LIR+RYR A+ +++ +GKM CLMIND+DAG GR G
Sbjct: 174 MGVEPVIMSAGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFG-N 232
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN+ DNPT V + + + + R+PIIVTGND ST+YAPLIRDGR
Sbjct: 233 TQMTVNNQIVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGR 292
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
M+KFYW P +ED + + + ++ D ++ D++ K+V TFP Q++DF+GALR+R YD + K
Sbjct: 293 MDKFYWQPNQEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILK 352
Query: 179 WISGVGVGS--IGKSLVNSKEA-APTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
W+ +G K L K+ P F P T++ LLE G +++EQ+ + +L+ +Y
Sbjct: 353 WVDDIGGAESFTSKFLKRRKDQNLPVFIPPEQTIDALLESGYSLLKEQQLIMETKLSKEY 412
Query: 236 L 236
+
Sbjct: 413 M 413
>gi|302769017|ref|XP_002967928.1| hypothetical protein SELMODRAFT_88296 [Selaginella moellendorffii]
gi|300164666|gb|EFJ31275.1| hypothetical protein SELMODRAFT_88296 [Selaginella moellendorffii]
Length = 421
Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 120/241 (49%), Positives = 169/241 (70%), Gaps = 4/241 (1%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGE+ES AGEP +LIR RYR AA ++K +GK+ CLMIND+DAG GR
Sbjct: 171 MGVEPVIMSAGEMESERAGEPGRLIRDRYRTAAQVVKNQGKLSCLMINDIDAGIGRFE-N 229
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN-PRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN+ADNPT V + + + + RVPIIVTGNDFSTL+APLIRDGR
Sbjct: 230 TQMTVNNQIVVGTLMNLADNPTQVSVGQDWREGDVIKRVPIIVTGNDFSTLWAPLIRDGR 289
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
M+KFYW P+RED I + ++ D ++ D+ +VD FP Q++DF+GAL++R D+E+ K
Sbjct: 290 MDKFYWQPSREDLINIVYRMYSKDGLSRVDVETIVDKFPNQALDFYGALKSRACDEELWK 349
Query: 179 WI-SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLS 237
W+ S G + + SK+ F P T+ LL+ G +V+EQ+ V +++L+D+Y+
Sbjct: 350 WLESNGGPEKLNEIFRQSKKKTIDFNPPEQTLTSLLKAGTSLVEEQKMVTKMRLSDEYMK 409
Query: 238 E 238
+
Sbjct: 410 K 410
>gi|302761150|ref|XP_002963997.1| hypothetical protein SELMODRAFT_82367 [Selaginella moellendorffii]
gi|300167726|gb|EFJ34330.1| hypothetical protein SELMODRAFT_82367 [Selaginella moellendorffii]
Length = 421
Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 120/241 (49%), Positives = 169/241 (70%), Gaps = 4/241 (1%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGE+ES AGEP +LIR RYR AA ++K +GK+ CLMIND+DAG GR
Sbjct: 171 MGVEPVIMSAGEMESERAGEPGRLIRDRYRTAAQVVKNQGKLSCLMINDIDAGIGRFE-N 229
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN-PRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQ+V TLMN+ADNPT V + + + + RVPIIVTGNDFSTL+APLIRDGR
Sbjct: 230 TQMTVNNQIVVGTLMNLADNPTQVSVGQDWREGDVIKRVPIIVTGNDFSTLWAPLIRDGR 289
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
M+KFYW P+RED I + ++ D ++ D+ +VD FP Q++DF+GAL++R D+E+ K
Sbjct: 290 MDKFYWQPSREDLINIVYRMYSKDGLSRVDVETIVDKFPNQALDFYGALKSRACDEELWK 349
Query: 179 WI-SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLS 237
W+ S G + + SK+ F P T+ LL+ G +V+EQ+ V +++L+D+Y+
Sbjct: 350 WLESNGGPEKLNEIFRQSKKKTIDFNPPEQTLTSLLKAGTSLVEEQKMVTKMRLSDEYMK 409
Query: 238 E 238
+
Sbjct: 410 K 410
>gi|384253471|gb|EIE26946.1| hypothetical protein COCSUDRAFT_11792, partial [Coccomyxa
subellipsoidea C-169]
Length = 404
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/260 (46%), Positives = 174/260 (66%), Gaps = 19/260 (7%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
+GI P++MSAGELES AG P +LIR RYR AA++ K +G++ CLMINDLDAG G +
Sbjct: 137 LGIEPVVMSAGELESEWAGAPGRLIRDRYRRAAEVAKVRGRLPCLMINDLDAGVG-IQEN 195
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
Q TVNNQMV+ TLMN+ DNP V + ++ + RVPIIVTGNDFSTL+APL+RDGR
Sbjct: 196 VQRTVNNQMVSGTLMNLCDNPNRVSVFQVWRDSDLVQRVPIIVTGNDFSTLFAPLVRDGR 255
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
M KFYW P R D + + +++ D ++ +D L+DTFPGQS+DFFGALRA YD+++R+
Sbjct: 256 MAKFYWEPDRIDLLNILHQMYKEDGLSVEDTQTLLDTFPGQSLDFFGALRAATYDNQIRR 315
Query: 179 WISGVGVGS-----------IGKSLVNS-----KEAAPTFEQPRMTMEKLLEYGNMIVQE 222
WI V + + K L++ ++ P+FE + +E LL+ G+ + +E
Sbjct: 316 WIKEEVVKADITDEDANMRELSKRLIDHMHVVRRKDLPSFEPVDLKLEDLLKEGHRLAEE 375
Query: 223 QENVKRVQLADKYLSEAALG 242
QENV R++L+++Y+ + G
Sbjct: 376 QENVNRLKLSEEYMKNSGGG 395
>gi|307108081|gb|EFN56322.1| hypothetical protein CHLNCDRAFT_144763 [Chlorella variabilis]
Length = 434
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/250 (48%), Positives = 167/250 (66%), Gaps = 13/250 (5%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
+G+ PI+MSAGELE+ AG P KLIR+RYR AA++ K GK+ CLMINDLDAG G
Sbjct: 173 LGVEPIIMSAGELENEWAGVPGKLIRERYRRAAEVSKVHGKLSCLMINDLDAGIGHFE-N 231
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQL-PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 118
TQ TVNNQMV TLMNI DNPT + + G + R+PIIVTGNDFST++APL+RDGR
Sbjct: 232 TQITVNNQMVVGTLMNICDNPTRISIGQGWMENDVTRRIPIIVTGNDFSTIFAPLVRDGR 291
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
M+KFYW PT ED +G+ ++++D +++ D+ L+ FPGQ++DFFGALR+ YD ++R+
Sbjct: 292 MDKFYWQPTEEDLVGILHQMYKDDGLSESDMAALLRAFPGQTLDFFGALRSSTYDGQIRQ 351
Query: 179 WI-SGVGVGSIGKSLVNSKEAA---------PTFEQPRMTMEKLLEYGNMIVQEQENVKR 228
WI V G I + N +E P FE +T+ L+E G + EQ+ V
Sbjct: 352 WIKQDVIHGEIAEDNQNMRELGRRLLRQEDLPQFEPVDLTLLMLMEEGRRLQAEQDMVNS 411
Query: 229 VQLADKYLSE 238
++L+D+YL +
Sbjct: 412 MRLSDEYLKK 421
>gi|125535371|gb|EAY81919.1| hypothetical protein OsI_37097 [Oryza sativa Indica Group]
Length = 360
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 162/292 (55%), Gaps = 75/292 (25%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGIN IMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDLDAG
Sbjct: 142 MGINLIMMSAGELESGNAGEPAKLIRQRYREAADMINKGKMCLLFINDLDAG-------R 194
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR-VPIIVTGNDFSTLYAPLIRDGRM 119
V+ + + AD + G ++ PR V + PLIRDGRM
Sbjct: 195 HDAVHGEQPDGE--RDAD-----EHRGQPHQRAAPRDVQPPCPHHRHRQRLLPLIRDGRM 247
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
+KFYWAPTREDRIGVC+GIFR+D K+ D FP S
Sbjct: 248 DKFYWAPTREDRIGVCRGIFRSD--------KVPDAFPSTS------------------- 280
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
G G+ G +EQENVKRV+LADKYLSEA
Sbjct: 281 -----SGRCGR-------------------------GCTATREQENVKRVRLADKYLSEA 310
Query: 240 ALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 291
ALG+AN D SG FYGKAAQQ VPVP GCTD A N+DPTARSDDGSC Y
Sbjct: 311 ALGDANHD---SGEFYGKAAQQSPVPVPAGCTDQRAANYDPTARSDDGSCVY 359
>gi|37522136|ref|NP_925513.1| ribulose-bisphosphate carboxylase activase, partial [Gloeobacter
violaceus PCC 7421]
gi|35213136|dbj|BAC90508.1| ribulose-bisphosphate carboxylase activase [Gloeobacter violaceus
PCC 7421]
Length = 294
Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 107/227 (47%), Positives = 155/227 (68%), Gaps = 3/227 (1%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQY 62
N I++S+ ELES +AGEP +LIR RYREAA+++K +G++ ++I+D+DAGAG TTQY
Sbjct: 58 NVIVISSSELESPDAGEPGRLIRLRYREAAELVKVRGRVAAIVIHDIDAGAGFWSATTQY 117
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
TVN Q+VNA LM IADNPT VQLPG Y+ PR+P +VTGNDFS LYAPL+RDGRM KF
Sbjct: 118 TVNTQLVNAALMAIADNPTNVQLPGSYDPTPLPRIPFVVTGNDFSKLYAPLVRDGRMSKF 177
Query: 123 YWAPTREDRIGVCKGIFRNDNVA--DDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
W PT ++ + +F D A D+ +L+ F Q +DFF A+R+R YDD + + +
Sbjct: 178 SWEPTFAEKSEIVAHLFAEDGAALGRYDLERLIQRFGAQPVDFFAAIRSRAYDDMLLQQV 237
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVK 227
G+ ++ ++LVN P FE R+ +++ L +G I+ +Q+ ++
Sbjct: 238 KAWGLENVSRNLVNHGGQPPRFEAVRLDLDRCLRWGEQIMSDQQAIE 284
>gi|358346465|ref|XP_003637288.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355503223|gb|AES84426.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 459
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/282 (41%), Positives = 168/282 (59%), Gaps = 47/282 (16%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ P++MSAGELES NAGEP +LIR+RYR A+ +++ +GKM CLMIND+DAG GR G T
Sbjct: 174 MGVEPVIMSAGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFGNT 233
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGR 118
Q TVNNQ+V TLMN+ DNPT V + + + + R+PIIVTGND ST+YAPLIRDGR
Sbjct: 234 -QMTVNNQIVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGR 292
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
M+KFYW P +ED + + + ++ D ++ D++ K+V TFP Q++DF+GALR+R YD + K
Sbjct: 293 MDKFYWQPNQEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILK 352
Query: 179 -----------------------------------------WISGV-GVGSIGKSLVNSK 196
W+ + G S + +
Sbjct: 353 GVELEEKPLSKESPVSYLLCTSNAVGITHTDRLIPQHLPTPWVDDIGGAESFASKFLKRR 412
Query: 197 --EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 236
+ P F P T++ LLE G +++EQ+ + +L+ +Y+
Sbjct: 413 KDQNLPVFIPPEQTIDALLESGYSLLKEQQLIMETKLSKEYM 454
>gi|145346081|ref|XP_001417523.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577750|gb|ABO95816.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 381
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/241 (47%), Positives = 153/241 (63%), Gaps = 6/241 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
MG+ PI+ SAGELE AGEP ++R+RY AA +++ GK+ CL+IND+DAG G+
Sbjct: 141 MGLQPIVTSAGELEDSTAGEPGAMLRRRYLTAARAMRETGKLSCLIINDIDAGIGKFKDD 200
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMY---NKEENPRVPIIVTGNDFSTLYAPLIRD 116
TVNNQ+ + TLMNI DNPT V ++ +K N RVPIIVTGNDFS LYAPL RD
Sbjct: 201 LG-TVNNQITHGTLMNICDNPTIVSEGLVWRTDSKSTNARVPIIVTGNDFSRLYAPLTRD 259
Query: 117 GRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEV 176
GRM+ + W PT ++ + + + ++D + LV TFP Q +DFFGALRARVYDD V
Sbjct: 260 GRMDLWMWEPTSQELVEMIHAMMKDDGLTTACCETLVATFPNQPLDFFGALRARVYDDAV 319
Query: 177 RKWISGVGVGSIGKSLVNSKEAAP-TFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
++ VG+ + SLV E +T+E+LL G +V EQENV +QLA +Y
Sbjct: 320 SDFVFNVGLDGLNDSLVGLDERRRLKLGDVTITLERLLACGRNVVGEQENVNNIQLAREY 379
Query: 236 L 236
+
Sbjct: 380 M 380
>gi|159491655|ref|XP_001703775.1| RuBisCO activase-like protein [Chlamydomonas reinhardtii]
gi|158270456|gb|EDO96301.1| RuBisCO activase-like protein [Chlamydomonas reinhardtii]
Length = 533
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/252 (42%), Positives = 156/252 (61%), Gaps = 15/252 (5%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
+G ++MS+GELE AG P KLIR+RYR+A+++ K +GKM L+I+D+DAG G
Sbjct: 220 LGAETVVMSSGELEHEWAGTPGKLIRERYRKASEMSKVRGKMTALLIHDIDAGLGHFD-H 278
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQL-PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 118
Q TVNNQ+V TLMNI DNP V + R PIIVTGNDFS ++APLIRDGR
Sbjct: 279 VQVTVNNQIVIGTLMNICDNPNVVSTGQDWFAVSRIRRTPIIVTGNDFSKMFAPLIRDGR 338
Query: 119 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
M+K+YW PTRED + + ++++D + D+ L+D F Q +DF+GALRA YD+++R
Sbjct: 339 MDKYYWKPTREDMVNIVLQMYQDDGITRRDVEALLDRFRHQPLDFYGALRASTYDEQIRD 398
Query: 179 WIS-----------GVGVGSIGKSLVN-SKEAAPTFEQPRMTMEKLLEYGNMIVQEQENV 226
WI + ++ K+L++ + P FE R+T++ L+ G + EQ+ V
Sbjct: 399 WIKTDVTGEEFIADAANLSNMAKTLLSVDRSEMPKFEPVRLTLDMLVAEGERLEMEQQQV 458
Query: 227 KRVQLADKYLSE 238
+L+++YL
Sbjct: 459 NDHKLSEQYLKH 470
>gi|326493048|dbj|BAJ84985.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326524450|dbj|BAK00608.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 206
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 140/202 (69%), Gaps = 5/202 (2%)
Query: 39 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRV 97
GKM CLMINDLDAG GR G T Q TVNNQ+V TLMN+ADNP V + + + + R+
Sbjct: 1 GKMSCLMINDLDAGLGRFGNT-QMTVNNQIVVGTLMNLADNPNRVSVGQKWRESDITHRI 59
Query: 98 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFP 157
PII TGNDFSTLYAPLIRDGRMEKFYW PTRED I + ++ D ++ +++ +VDTFP
Sbjct: 60 PIIATGNDFSTLYAPLIRDGRMEKFYWQPTREDIINIIHRMYTKDGLSLEEVSSIVDTFP 119
Query: 158 GQSIDFFGALRARVYDDEVRKWISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLE 214
Q++DF+GALR+R YD + +W++ + G +G+ L+ K E PTF P+ T++ L++
Sbjct: 120 NQALDFYGALRSRTYDQAILQWVNDIGGYEQLGEKLLKRKNREKLPTFIPPKPTLDALIQ 179
Query: 215 YGNMIVQEQENVKRVQLADKYL 236
GN +V+EQ V L+ +Y+
Sbjct: 180 SGNSLVEEQAFVMNSNLSKEYM 201
>gi|308803006|ref|XP_003078816.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
gi|116057269|emb|CAL51696.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
Length = 584
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 157/242 (64%), Gaps = 18/242 (7%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
MG+ PI+ SAGELE G AGEP ++R+RY AA +++ G++ CL+IND+DAG GR
Sbjct: 140 MGLMPIVTSAGELEDGTAGEPGAMLRRRYLTAARAMRETGRLSCLIINDIDAGIGRFRDD 199
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYN---KEENPRVPIIVTGNDFSTLYAPLIRD 116
TVNNQ+ + TLMNI DNPT V + K N RVPIIVTGNDFS LYAPL RD
Sbjct: 200 LG-TVNNQITHGTLMNICDNPTLVSEGNAWRHDAKMTNARVPIIVTGNDFSRLYAPLTRD 258
Query: 117 GRMEKFYWAPTREDRIGVC-KGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDE 175
GRM+ W +C I ++D +++ D LVDTFP Q +DFFGA+RARVYDD
Sbjct: 259 GRMD--LW---------ICYTAITKDDGLSEKDCETLVDTFPQQPLDFFGAIRARVYDDA 307
Query: 176 VRKWISGVGVGSIGKSLVNSKEAA-PTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADK 234
VR +I VG+ + ++LV E+ T + ++E+L++ G+ + +EQENV +QLA +
Sbjct: 308 VRDFILDVGLVGMNEALVGGVESKRKTLGKVNASLERLIQAGHELCEEQENVSNIQLARE 367
Query: 235 YL 236
Y+
Sbjct: 368 YM 369
>gi|414585019|tpg|DAA35590.1| TPA: hypothetical protein ZEAMMB73_040721 [Zea mays]
Length = 203
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/200 (50%), Positives = 138/200 (69%), Gaps = 5/200 (2%)
Query: 41 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPI 99
M CLMINDLDAG GR G T Q TVNNQ+ TLMN+ADNPT V + + + + RVPI
Sbjct: 1 MSCLMINDLDAGVGRFGNT-QMTVNNQIAVGTLMNLADNPTRVSIGQKWRESDVTHRVPI 59
Query: 100 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 159
IVTGNDFSTLYAPLIRDGRMEKFYW P RED I + G++ D ++ +++ ++VD FP Q
Sbjct: 60 IVTGNDFSTLYAPLIRDGRMEKFYWQPNREDIISIVHGMYIKDGLSVEEVSRIVDAFPNQ 119
Query: 160 SIDFFGALRARVYDDEVRKWISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYG 216
++DF+GALR+R YD + +W+ + G + + L+ K E PTF P+ T+E L+E G
Sbjct: 120 ALDFYGALRSRTYDQAILEWVEEIGGHEQLNEKLLKRKKGEELPTFIPPKPTLEALIESG 179
Query: 217 NMIVQEQENVKRVQLADKYL 236
+V+EQE + +L+ +Y+
Sbjct: 180 YSLVKEQELIMSSKLSKEYM 199
>gi|412986205|emb|CCO17405.1| predicted protein [Bathycoccus prasinos]
Length = 596
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 143/241 (59%), Gaps = 4/241 (1%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
+G+ PI+ SAGELE AGEP KL+R+RY A + ++ G CL+IND+DAG GR T
Sbjct: 138 LGVLPIVTSAGELEDATAGEPGKLLRRRYLAAGKMTRETGVPTCLIINDIDAGVGRFKHT 197
Query: 60 TQYTVNNQMVNATLMNIADNPTCV--QLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 117
T TVNNQ+V TLMNIADNPT V + N+ PRVP+IVTGNDFS LYAPL RDG
Sbjct: 198 TSSTVNNQIVQGTLMNIADNPTNVYEDTSIVGNRASVPRVPVIVTGNDFSRLYAPLARDG 257
Query: 118 RMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 177
RM+KF+W P+RE+ +G+ IF + D KLV FP Q +DFF A+R R D V
Sbjct: 258 RMDKFFWEPSREEIVGIMTPIFAQHGLDKRDTEKLVSHFPNQPLDFFSAVRNRAIDAFVL 317
Query: 178 KWISGVGVGSIGKSL-VNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 236
+ + L N + + ++ E L + EQ+NV +QL+ +YL
Sbjct: 318 DFCVENEMAFTSALLDANKSSSQSKVSERTVSYETFLSAARYVQNEQQNVNNLQLSREYL 377
Query: 237 S 237
+
Sbjct: 378 A 378
>gi|255078274|ref|XP_002502717.1| predicted protein [Micromonas sp. RCC299]
gi|226517982|gb|ACO63975.1| predicted protein [Micromonas sp. RCC299]
Length = 396
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 96/186 (51%), Positives = 132/186 (70%), Gaps = 8/186 (4%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
+G++P++MSAGELE AGEP +LIR+RYR AA+I+K +GK CL+IND+DAG G
Sbjct: 212 LGVHPVVMSAGELEDEWAGEPGRLIRRRYRHAAEIMKVRGKATCLIINDIDAGVGWFK-Q 270
Query: 60 TQYTVNNQMVNATLMNIADNPTCV------QLPGMYNKEENPRVPIIVTGNDFSTLYAPL 113
TQ TVN QMV TLMNI D+P V ++ + E RVPII+TGND STLYAPL
Sbjct: 271 TQATVNTQMVMGTLMNICDHPNFVSNEEDDEIHAYRDDEYIRRVPIIITGNDLSTLYAPL 330
Query: 114 IRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYD 173
+RDGRM+KFYW+PTRED + ++++D+V + +LV + Q +DFFGA+R+R+YD
Sbjct: 331 LRDGRMDKFYWSPTREDICDMVHAMYKDDDVPRATVERLVQAYSHQPLDFFGAIRSRMYD 390
Query: 174 DEVRKW 179
+ + +W
Sbjct: 391 EAIARW 396
>gi|303290017|ref|XP_003064296.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454612|gb|EEH51918.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 505
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 156/271 (57%), Gaps = 36/271 (13%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
+ I P++MSAGELE AG P +LIR RYR+AA+II+ GKM CL+IND+DAG GR
Sbjct: 231 LDITPVVMSAGELEDEWAGNPGRLIRSRYRKAAEIIRNHGKMSCLIINDIDAGVGRFK-R 289
Query: 60 TQYTVNNQMVNATLMNIADNPTCV------QLPGMYNKEENPRVPIIVTGNDFSTLYAPL 113
TQ TVN QMV TLMN+ D+PT V ++ +E RVPIIVTGND STLYAPL
Sbjct: 290 TQATVNTQMVMGTLMNLCDHPTQVSNEEDDEIHEYREEERIRRVPIIVTGNDLSTLYAPL 349
Query: 114 IRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYD 173
+RDGRMEKFYW PTR D + ++R+D+V+ + + +LV GQ +DFFGA RAR+YD
Sbjct: 350 LRDGRMEKFYWQPTRTDIADMVHAMYRDDDVSRETVERLVARHEGQPLDFFGATRARMYD 409
Query: 174 DEVRKWISGVG-------------VGSIGKSLVNSKEA---------------APTFEQP 205
+ +W ++G+ L+ ++ P F
Sbjct: 410 RCIVEWAESFRSETPDPVTGQRHVTKAMGEHLMKNRTRERPDDEHDPGDFVLWKPDFTVQ 469
Query: 206 RMTMEKLLEYGNMIVQEQENVKRVQLADKYL 236
+ E L+ + + + +EQ V +L++ Y+
Sbjct: 470 DCSEEALMRHADDLAREQRLVNEKRLSEDYM 500
>gi|303281738|ref|XP_003060161.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458816|gb|EEH56113.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 498
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/255 (43%), Positives = 156/255 (61%), Gaps = 20/255 (7%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK--------GKMCCLMINDLDAG 52
M +PI++SAGELE AG P + IR+RYR A+ ++ + G++ CL+INDLDAG
Sbjct: 203 MRASPIIVSAGELEDEWAGAPGRRIRERYRAASRLMSQARSISTLTGRLACLVINDLDAG 262
Query: 53 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE--ENPRVPIIVTGNDFSTLY 110
AG T Q TVN QMV TLMN+ D+PT V + +E E RVPII+TGND STLY
Sbjct: 263 AGTYRAT-QKTVNMQMVMGTLMNLCDHPTSVSVGAEEWREDRELRRVPIIITGNDLSTLY 321
Query: 111 APLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQS---IDFFGAL 167
APL+RDGRM+KF WAP+ ++R + + V D ++LV F Q+ +DFFGAL
Sbjct: 322 APLLRDGRMDKFMWAPSIDERAAAVHAVMADAGVTARDALELVRAFSNQARSPLDFFGAL 381
Query: 168 RARVYDDEVRKWIS-GVGVGSIGKSLVNS---KEAAPTFEQ--PRMTMEKLLEYGNMIVQ 221
AR D V +WI+ G +G +L+ AP+ ++ R+T+E LLE G + +
Sbjct: 382 HARTVDAAVLEWIARNGGARGMGDALLRGDARTRKAPSVDRSSSRLTLEALLEIGRELER 441
Query: 222 EQENVKRVQLADKYL 236
EQ+ V V+L D+Y+
Sbjct: 442 EQQRVLDVRLVDEYM 456
>gi|305855733|gb|ADM67707.1| putative rubisco activase [Rhododendron mariesii]
Length = 171
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/95 (97%), Positives = 94/95 (98%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 77 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTT 136
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 95
QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP
Sbjct: 137 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 171
>gi|145353113|ref|XP_001420873.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581108|gb|ABO99166.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/189 (51%), Positives = 133/189 (70%), Gaps = 7/189 (3%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
MG+ PI+ SAGELE NAG P +LIR+RY+ A +I+++ G M CL+IND+DAG G
Sbjct: 155 MGVTPIITSAGELEDENAGAPGRLIRERYKRAGEILRRTGVMSCLIINDVDAGIGWFK-D 213
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE----ENPRVPIIVTGNDFSTLYAPLIR 115
TQ+TVNNQ V TLMN+ D+P V L ++ + RVPIIVTGND ST+YAPL+R
Sbjct: 214 TQHTVNNQTVCGTLMNLCDHPELVSLGEDRGEDGKNLQTARVPIIVTGNDLSTVYAPLLR 273
Query: 116 DGRMEKFYWAPTREDRIGVCKGIFRND-NVADDDIVKLVDTFPGQSIDFFGALRARVYDD 174
DGRM+K+YW P+R+D + +F+++ + + D +LV+ FPGQ +DFFGA RA+VYDD
Sbjct: 274 DGRMDKWYWNPSRDDICDIVHALFKDEVDWSPDATARLVNAFPGQPLDFFGAARAKVYDD 333
Query: 175 EVRKWISGV 183
V +W+ V
Sbjct: 334 AVSRWMCEV 342
>gi|338807890|gb|AEJ07669.1| putative rubisco activase [Rhododendron chihsinianum]
Length = 171
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/95 (96%), Positives = 94/95 (98%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 77 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTT 136
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 95
QYTVNNQMVNATLMNIADNPTCVQLPGMYNKE+NP
Sbjct: 137 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEDNP 171
>gi|305855731|gb|ADM67706.1| putative rubisco activase [Rhododendron ellipticum]
gi|305855735|gb|ADM67708.1| putative rubisco activase [Rhododendron nakaharae]
gi|305855737|gb|ADM67709.1| putative rubisco activase [Rhododendron noriakianum]
gi|305855739|gb|ADM67710.1| putative rubisco activase [Rhododendron kanehirai]
gi|305855741|gb|ADM67711.1| putative rubisco activase [Rhododendron simsii]
gi|305855743|gb|ADM67712.1| putative rubisco activase [Rhododendron oldhamii]
gi|305855745|gb|ADM67713.1| putative rubisco activase [Rhododendron rubropilosum]
gi|338807888|gb|AEJ07668.1| putative rubisco activase [Rhododendron simsii]
gi|338807892|gb|AEJ07670.1| putative rubisco activase [Rhododendron seniavinii]
gi|338807896|gb|AEJ07672.1| putative rubisco activase [Rhododendron simsii]
gi|338807898|gb|AEJ07673.1| putative rubisco activase [Rhododendron scabrum]
Length = 171
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/95 (96%), Positives = 94/95 (98%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 77 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTT 136
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 95
QYTVNNQMVNATLMNIADNPTCVQLPGMYNKE+NP
Sbjct: 137 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEDNP 171
>gi|305855727|gb|ADM67704.1| putative rubisco activase [Pieris japonica var. taiwanensis]
Length = 171
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 91/95 (95%), Positives = 93/95 (97%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 77 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTT 136
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 95
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NP
Sbjct: 137 QYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDNP 171
>gi|305855755|gb|ADM67718.1| putative rubisco activase [Rhododendron rubropunctatum]
gi|305855757|gb|ADM67719.1| putative rubisco activase [Rhododendron morii]
gi|305855759|gb|ADM67720.1| putative rubisco activase [Rhododendron pseudochrysanthum]
Length = 171
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 91/95 (95%), Positives = 93/95 (97%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 77 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTT 136
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 95
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NP
Sbjct: 137 QYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDNP 171
>gi|305855747|gb|ADM67714.1| putative rubisco activase [Rhododendron breviperulatum]
Length = 171
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 91/95 (95%), Positives = 93/95 (97%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 77 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTT 136
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 95
QYTVNNQMVNATLMNIADNPTCVQLP MYNKE+NP
Sbjct: 137 QYTVNNQMVNATLMNIADNPTCVQLPCMYNKEDNP 171
>gi|338807894|gb|AEJ07671.1| putative rubisco activase [Rhododendron wiltonii]
Length = 171
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 91/95 (95%), Positives = 93/95 (97%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 77 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTT 136
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 95
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NP
Sbjct: 137 QYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDNP 171
>gi|412985424|emb|CCO18870.1| predicted protein [Bathycoccus prasinos]
Length = 1026
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 97/189 (51%), Positives = 127/189 (67%), Gaps = 9/189 (4%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
+G+ PI+ SAGELE +AG P +LIRQRYR A ++++ GKM CL++ND+DAG G T
Sbjct: 225 LGMMPIVTSAGELEDESAGGPGRLIRQRYRRAGEVVRVHGKMSCLIVNDIDAGLGWFKDT 284
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP-----RVPIIVTGNDFSTLYAPLI 114
Q TVNNQ V TLMN+ D+P V L G +E+ R+PIIVTGND S LYAPL+
Sbjct: 285 QQ-TVNNQTVCGTLMNLCDHPELVSL-GEERREDGSNLQTVRIPIIVTGNDLSRLYAPLL 342
Query: 115 RDGRMEKFYWAPTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFPGQSIDFFGALRARVYD 173
RDGRMEK+YW P +D + + +F++D + DD LV FP Q +DFFGA R+ VYD
Sbjct: 343 RDGRMEKWYWDPQFDDIVNMVDALFKDDPLWSIDDTRALVAKFPNQPLDFFGATRSTVYD 402
Query: 174 DEVRKWISG 182
D +R W+ G
Sbjct: 403 DAIRNWMIG 411
>gi|305855749|gb|ADM67715.1| putative rubisco activase [Rhododendron kawakamii]
Length = 171
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 90/95 (94%), Positives = 93/95 (97%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 77 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTT 136
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 95
Q+TVNNQMVNATLMNIADNPTCVQLPG YNKE+NP
Sbjct: 137 QFTVNNQMVNATLMNIADNPTCVQLPGRYNKEDNP 171
>gi|305855729|gb|ADM67705.1| putative rubisco activase [Rhododendron ovatum]
Length = 171
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/95 (94%), Positives = 92/95 (96%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESG AGEPAKLIRQRYREAADII+KGKMCCL INDL+AGAGRMGGTT
Sbjct: 77 MGINPIMMSAGELESGKAGEPAKLIRQRYREAADIIRKGKMCCLFINDLEAGAGRMGGTT 136
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 95
QYTVNNQMVNATLMNIA NPTCVQLPGMYNKEENP
Sbjct: 137 QYTVNNQMVNATLMNIAHNPTCVQLPGMYNKEENP 171
>gi|305855753|gb|ADM67717.1| putative rubisco activase [Rhododendron hyperythrum]
Length = 171
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/94 (95%), Positives = 92/94 (97%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 77 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTT 136
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 94
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N
Sbjct: 137 QYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDN 170
>gi|305855751|gb|ADM67716.1| putative rubisco activase [Rhododendron formosanum]
Length = 171
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 90/95 (94%), Positives = 92/95 (96%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTT
Sbjct: 77 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTT 136
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 95
QYTVNNQMVNATLMNIADNPT VQLPGM NKE+NP
Sbjct: 137 QYTVNNQMVNATLMNIADNPTSVQLPGMNNKEDNP 171
>gi|345111061|pdb|3THG|A Chain A, Crystal Structure Of The Creosote Rubisco Activase
C-Domain
Length = 107
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 87/102 (85%), Positives = 94/102 (92%)
Query: 127 TREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVG 186
TREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+S VGV
Sbjct: 6 TREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVD 65
Query: 187 SIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKR 228
+IGK LVNSKE P+FEQP+MT++KLL YG M+VQEQENVKR
Sbjct: 66 TIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKR 107
>gi|133711850|gb|ABO36654.1| RuBisCO activase [Cucumis sativus]
Length = 111
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/108 (79%), Positives = 96/108 (88%)
Query: 125 APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVG 184
APTREDRIG+C GIFR D V +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW GVG
Sbjct: 1 APTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVG 60
Query: 185 VGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLA 232
V IG++LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct: 61 VERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKLV 108
>gi|303281566|ref|XP_003060075.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458730|gb|EEH56027.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 390
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/250 (41%), Positives = 150/250 (60%), Gaps = 19/250 (7%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
MG+ PI+ SAGELE AGEP L+R+RY A+ I+ GK DLDAG GR
Sbjct: 67 MGVTPIVTSAGELEDPVAGEPGALLRRRYLAASTAIRHTGKPA-----DLDAGIGRHR-D 120
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR---VPIIVTGNDFSTLYAPLIRD 116
+ TVNNQ+V ATLMN+ D+PT V + G + ++ R VPI+VTGND S +YAPL R
Sbjct: 121 DKTTVNNQIVAATLMNLCDDPTRVSVGGEWRADDRARCERVPIVVTGNDLSRVYAPLTRS 180
Query: 117 GRMEKFYWAPTREDRIGVCKGIFRNDNVAD-----DDIVKLVDTFPGQSIDFFGALRARV 171
GRM+ + W PTR++ + + ++D +D + VD F Q +DFFGA R+R
Sbjct: 181 GRMDLWMWEPTRDEIAEMVHQLLKDDKRPGGYGGIEDARRFVDAFDAQPLDFFGAARSRC 240
Query: 172 YDDEVRKWISGVGVGSIGKSLVNS----KEAAPTFEQPRMTMEKLLEYGNMIVQEQENVK 227
DD+VR ++ VGV S+G L++S K + + +++E L+ G I +EQ+NV
Sbjct: 241 VDDDVRAFVDRVGVESLGTRLLSSGDKIKSKSVVVGRGDVSLEALVRAGRAIEREQQNVL 300
Query: 228 RVQLADKYLS 237
V+L+ +YL+
Sbjct: 301 DVRLSREYLA 310
>gi|290760300|gb|ADD54590.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1
[Linum usitatissimum]
Length = 178
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/87 (96%), Positives = 85/87 (97%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREA+DIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 92 MGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIKKGKMCCLFINDLDAGAGRMGGTT 151
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPG 87
QYTVNNQMVNATLMNIADNPT VQLPG
Sbjct: 152 QYTVNNQMVNATLMNIADNPTNVQLPG 178
>gi|255088359|ref|XP_002506102.1| ribulose bisphosphate carboxylase/oxygenase activase [Micromonas
sp. RCC299]
gi|226521373|gb|ACO67360.1| ribulose bisphosphate carboxylase/oxygenase activase [Micromonas
sp. RCC299]
Length = 395
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 151/254 (59%), Gaps = 21/254 (8%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAA-DIIKKGKMCCLMINDLDAGAGRMGGT 59
+G+ P+++SAGELE AGEP ++R+RY A + G C+++ND+DAG GR
Sbjct: 145 LGVFPVVVSAGELEDPTAGEPGAMLRRRYLTAGKHMSASGAPTCVIVNDVDAGVGRFK-D 203
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN---PRVPIIVTGNDFSTLYAPLIRD 116
+ TVNNQ+ ATLMN+ D P V + G + ++ PRVPI+VT ND S LYAPL R+
Sbjct: 204 DKATVNNQIAQATLMNLCDEPNRVSVGGEWRSDDRAHCPRVPIVVTANDPSVLYAPLTRN 263
Query: 117 GRMEKFYWAPTREDRIGVCKGIFRNDNVA-----DDDIVKLVDTFPGQSIDFFGALRARV 171
GR + + W PTR + + K + + A + D ++LV+ FP Q +DFFGA+R+R
Sbjct: 264 GRTDLWMWEPTRGE---ITKMVHDALDGAPGYGGESDALELVNAFPSQPLDFFGAVRSRC 320
Query: 172 YDDEVRKWISGVGVGSIGKSLVNSK--------EAAPTFEQPRMTMEKLLEYGNMIVQEQ 223
DD VR++I+ VG+ ++G +L + +A T ++ LLE G I +EQ
Sbjct: 321 ADDAVRRFIARVGLENLGATLCGHRGREGGDPGWSASTLTGMDASLRSLLEAGAEIAREQ 380
Query: 224 ENVKRVQLADKYLS 237
+NV V L+ +Y++
Sbjct: 381 QNVMDVALSREYVA 394
>gi|388515017|gb|AFK45570.1| unknown [Lotus japonicus]
Length = 184
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 121/178 (67%), Gaps = 4/178 (2%)
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
TVNNQ+V TLMN++DNPT V + + + + R+PIIVTGNDFST+YAPLIRDGRM+K
Sbjct: 2 TVNNQIVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDK 61
Query: 122 FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 181
FYW P RED + ++ D ++ D++ ++VDTFP Q++DF+GALR+R YD + KW+
Sbjct: 62 FYWQPNREDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWVD 121
Query: 182 GV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 236
+ GV + G ++ + + P F P T++ LLE G +++EQE V +L+ +Y+
Sbjct: 122 DIGGVENFGSKILKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYM 179
>gi|111162643|gb|ABH07508.1| RuBisCO activase, partial [Nicotiana attenuata]
Length = 100
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/100 (73%), Positives = 87/100 (87%)
Query: 140 RNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAA 199
R DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW+SG G+ +IG L+NS +
Sbjct: 1 RTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGP 60
Query: 200 PTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239
PTFEQP+MT+EKLL YGNM+VQEQENVKRVQLA+ YL EA
Sbjct: 61 PTFEQPKMTVEKLLGYGNMLVQEQENVKRVQLAETYLKEA 100
>gi|168415082|gb|ACA23474.1| rubisco activase [Arachis diogoi]
Length = 94
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/91 (82%), Positives = 82/91 (90%)
Query: 166 ALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQEN 225
ALRARVYDDEVRKWISGVGV +GK LVNSKE PTFEQP+MT+EKLLEYGNM+VQEQEN
Sbjct: 1 ALRARVYDDEVRKWISGVGVEGVGKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQEN 60
Query: 226 VKRVQLADKYLSEAALGEANEDAIQSGNFYG 256
VKRVQLADKYL+EAALG+AN DAI G F+G
Sbjct: 61 VKRVQLADKYLNEAALGDANADAINRGAFFG 91
>gi|356494967|ref|XP_003516352.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 118
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/94 (76%), Positives = 81/94 (86%)
Query: 163 FFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQE 222
FFGAL+ARVYDDEVRKWIS VGV IGK LVNSKE P F+QP+MT+ KLLEYGNM+VQE
Sbjct: 18 FFGALKARVYDDEVRKWISVVGVDFIGKKLVNSKEGPPNFDQPKMTLSKLLEYGNMLVQE 77
Query: 223 QENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 256
QENV+RVQLAD YL EAALG+AN+D+I G FYG
Sbjct: 78 QENVERVQLADMYLKEAALGDANQDSINRGTFYG 111
>gi|307104587|gb|EFN52840.1| hypothetical protein CHLNCDRAFT_26386, partial [Chlorella
variabilis]
Length = 239
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 113/187 (60%), Gaps = 5/187 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 59
MG+ P+ +SAGELE AGEP + +R+RY AA + G+ CL+I+DLDAG G T
Sbjct: 1 MGVLPVCLSAGELEDEWAGEPGRRLRERYAFAARHTESTGEATCLVISDLDAGVGVFANT 60
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYN--KEENPRVPIIVTGNDFSTLYAPLIRDG 117
TVN Q + +LM + D+P V + + RVPI VT ND + LYAPL+R+G
Sbjct: 61 AN-TVNTQNLQGSLMALCDDPLLVSAGQEWAAVRRRALRVPIYVTANDLTCLYAPLVREG 119
Query: 118 RMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 177
RM+KFY+ P+R + + +F + D+ L+D FP Q +DFFG+++AR+ D VR
Sbjct: 120 RMDKFYFEPSRGEMAAALRALF-APQLGAADVKVLLDAFPEQPMDFFGSIKARLVDGAVR 178
Query: 178 KWISGVG 184
+W+ G
Sbjct: 179 RWLHQAG 185
>gi|115486825|ref|NP_001068556.1| Os11g0707100 [Oryza sativa Japonica Group]
gi|62733170|gb|AAX95287.1| Similar to ribulose bisphosphate carboxylase/oxygenase activase b,
chloroplastprecursor (rubisco activase b) (ra b) [Oryza
sativa Japonica Group]
gi|62733298|gb|AAX95415.1| ribulose bisphosphate carboxylase/oxygenase activase b,
chloroplastprecursor (rubisco activase b) (ra b)-related
[Oryza sativa Japonica Group]
gi|77552727|gb|ABA95524.1| expressed protein [Oryza sativa Japonica Group]
gi|113645778|dbj|BAF28919.1| Os11g0707100 [Oryza sativa Japonica Group]
gi|125578109|gb|EAZ19331.1| hypothetical protein OsJ_34881 [Oryza sativa Japonica Group]
Length = 366
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 83/131 (63%), Gaps = 34/131 (25%)
Query: 161 IDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIV 220
IDFFGALRARVY DEVR+W++ +GV +IG+ L
Sbjct: 269 IDFFGALRARVYGDEVRRWVAEIGVENIGRRL---------------------------- 300
Query: 221 QEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDP 280
ENVKRV+LADKYLSEAALG+AN D SG FYGKA QQ VPVP GCTD A N+DP
Sbjct: 301 ---ENVKRVRLADKYLSEAALGDANHD---SGEFYGKAEQQSPVPVPAGCTDQRAANYDP 354
Query: 281 TARSDDGSCQY 291
TARSDDGSC Y
Sbjct: 355 TARSDDGSCVY 365
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 40/52 (76%), Gaps = 8/52 (15%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 52
MGIN IMMSAGE PAKLIRQRYREAAD+I KGKMC L INDLDAG
Sbjct: 142 MGINLIMMSAGE--------PAKLIRQRYREAADMINKGKMCVLFINDLDAG 185
>gi|302836245|ref|XP_002949683.1| hypothetical protein VOLCADRAFT_42653 [Volvox carteri f.
nagariensis]
gi|300265042|gb|EFJ49235.1| hypothetical protein VOLCADRAFT_42653 [Volvox carteri f.
nagariensis]
Length = 323
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 132/245 (53%), Gaps = 13/245 (5%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
+G ++MS+GELE AG P KLIR+RYR+A+++ K +GKM L+I+D+DAG G
Sbjct: 86 LGAETVVMSSGELEHEWAGTPGKLIRERYRKASEMSKVRGKMTALLIHDIDAGLGHF-DH 144
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN-PRVPIIVTGNDFSTLYAP-LIRDG 117
Q TVNNQ+V TLMNI DNP V + + E+ R PIIVTG + ++ L+R
Sbjct: 145 VQVTVNNQIVIGTLMNICDNPNVVSVGQDWRSEDRIRRTPIIVTGRGPTRRFSRYLLRVT 204
Query: 118 RMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 177
+ + P + + C + + V F Q +DFFGALRA YD+++R
Sbjct: 205 SVTQ----PHSTNHLSNC--YLPTNTPCCTYVYTYVCRFKRQPLDFFGALRASTYDEQIR 258
Query: 178 KWI-SGVGVGSIGKSLV--NSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADK 234
+WI + G G+ V K P FE R+T++ L+ G + EQ+ V +L+
Sbjct: 259 QWIRRDITGGLWGEVCVGGTDKSGLPRFEPVRLTVDMLVAEGERLENEQQQVLNHKLSAD 318
Query: 235 YLSEA 239
YL
Sbjct: 319 YLRHV 323
>gi|22255887|gb|AAM94806.1| rubisco activase alpha [Gossypium hirsutum]
Length = 76
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 67/76 (88%)
Query: 218 MIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAEN 277
M+V EQENVKRVQLADKYLSEAALGEANED+I G FYGKAAQQ+ VPVPEGCTDP A+N
Sbjct: 1 MLVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFYGKAAQQVGVPVPEGCTDPNADN 60
Query: 278 FDPTARSDDGSCQYTL 293
FDPTARSDDG+C Y
Sbjct: 61 FDPTARSDDGTCTYKF 76
>gi|301323237|gb|ADK70390.1| rubisco activase [Musa AB Group]
Length = 68
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/67 (85%), Positives = 63/67 (94%)
Query: 225 NVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARS 284
NVKRVQLADKYLSEAALG+AN+DAI++G FYGKAAQQ+N+PVPEGCTDP A NFDPTARS
Sbjct: 2 NVKRVQLADKYLSEAALGDANQDAIKTGQFYGKAAQQVNIPVPEGCTDPIATNFDPTARS 61
Query: 285 DDGSCQY 291
DDGSC Y
Sbjct: 62 DDGSCLY 68
>gi|134035003|sp|P85086.1|RCA_ARAHY RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase
Length = 140
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 81/168 (48%), Gaps = 85/168 (50%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAK MCCL INDLDAGAGR
Sbjct: 58 MGINPIMMSAGELESGNAGEPAK-----------------MCCLFINDLDAGAGR----- 95
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
VPIIVTGNDFSTLYAPLI
Sbjct: 96 ------------------------------------VPIIVTGNDFSTLYAPLI------ 113
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR 168
RIGVC GIFR LVDTFPGQSIDFFGALR
Sbjct: 114 ----------RIGVCTGIFR-----------LVDTFPGQSIDFFGALR 140
>gi|308810312|ref|XP_003082465.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
gi|116060933|emb|CAL57411.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
Length = 555
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 75/113 (66%), Gaps = 7/113 (6%)
Query: 74 MNIADNPTCVQLPGMYNKEE-----NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 128
MN+ D+P V + G ++ RVPIIVT ND ST+YAPL+RDGRM+K+YW+PTR
Sbjct: 1 MNLCDHPELVSV-GEDRGDDGRNMVTARVPIIVTANDLSTVYAPLLRDGRMDKWYWSPTR 59
Query: 129 EDRIGVCKGIFRN-DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
+D + +F++ + + +LVD FPGQ +DFFGA RA+VYDD + W+
Sbjct: 60 DDICDIVHALFKDEEKWTYEATARLVDEFPGQPLDFFGAARAKVYDDAIHHWM 112
>gi|187470377|gb|ACD11149.1| ribulose bisphosphate carboxylase activase [Lemna minor]
Length = 68
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/55 (94%), Positives = 52/55 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 55
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII KGKMC L INDLDAGAGR
Sbjct: 14 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIAKGKMCALFINDLDAGAGR 68
>gi|18476502|gb|AAL50316.1| ultraviolet-B-repressible rubisco activase [Pisum sativum]
Length = 50
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/50 (86%), Positives = 48/50 (96%)
Query: 205 PRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 254
P+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+ANEDAI+ G F
Sbjct: 1 PKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANEDAIKRGTF 50
>gi|62176924|emb|CAG25592.1| putative rubisco activase [Triticum durum]
Length = 50
Score = 83.2 bits (204), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/50 (74%), Positives = 49/50 (98%)
Query: 207 MTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 256
MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYG
Sbjct: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 50
>gi|338746118|emb|CCC15108.1| rubisco activase [Lepidodinium chlorophorum]
Length = 252
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 42/48 (87%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 48
+GINPI+MSAGELESGNAGEPAKL+R +EA++ IKKGKMC L IN+
Sbjct: 205 LGINPIVMSAGELESGNAGEPAKLVRAGNKEASEFIKKGKMCFLFINE 252
>gi|145566934|sp|P85111.1|RCA_VITSX RecName: Full=Ribulose bisphosphate carboxylase/oxygenase
activase, chloroplastic; Short=RA; Short=RuBisCO
activase
Length = 62
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 40/60 (66%), Gaps = 17/60 (28%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPA KMCCL INDLDAGAGR+G T
Sbjct: 16 MGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVCT 58
>gi|86611442|gb|ABD14394.1| chloroplast RuBisCO small isoform precursor [Oryza sativa Japonica
Group]
Length = 31
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 28/31 (90%)
Query: 263 NVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct: 1 NLPVPEGCTDPVAKNFDPTARSDDGSCLYTF 31
>gi|22255885|gb|AAM94805.1| rubisco activase beta [Gossypium hirsutum]
Length = 37
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/37 (81%), Positives = 33/37 (89%)
Query: 218 MIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 254
M+V EQENVKRVQLADKYLSEAALG AN+DAI+ G F
Sbjct: 1 MLVAEQENVKRVQLADKYLSEAALGNANDDAIKRGAF 37
>gi|222641172|gb|EEE69304.1| hypothetical protein OsJ_28586 [Oryza sativa Japonica Group]
Length = 318
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 26/36 (72%)
Query: 258 AAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
A Q N+PVPEGCTDP A NFDPTA S+D C YT
Sbjct: 283 AQQAGNLPVPEGCTDPVANNFDPTAMSNDSICLYTF 318
>gi|431794110|ref|YP_007221015.1| ATP-dependent Zn protease [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430784336|gb|AGA69619.1| ATP-dependent Zn protease [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 493
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM--CCLMINDLDAGAGRMGGTTQYT 63
+ +S E AG A+ +R+ +R+A D+ KK K + I+++D + G +
Sbjct: 127 LAISGSEFVEMYAGVGAERVRRLFRKARDLAKKEKKDRAIIFIDEMDILGAKRGSNVSHH 186
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
+Q +N L V++ G+ ++E+ P++ I+ N L L+R GR ++
Sbjct: 187 EYDQTLNQLL---------VEMDGLGSEEQGPQILIVAATNRAEALDPALLRPGRFDRQV 237
Query: 124 WA--PTREDRIGVCKGIFRNDNVADD 147
P RE R+ + K +N +A D
Sbjct: 238 KVDLPDREGRLAILKIHAKNKPLATD 263
>gi|397671724|ref|YP_006513259.1| AAA ATPase [Propionibacterium propionicum F0230a]
gi|395141804|gb|AFN45911.1| ATPase, AAA family [Propionibacterium propionicum F0230a]
Length = 514
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 45/179 (25%)
Query: 28 RYREAADIIKKGKMCCLMINDLDAGA--GRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 85
R REA ++ C L I++++ G G GGTT+ + +
Sbjct: 313 RLREALATAERVAPCVLWIDEIEKGLAQGSDGGTTRRLIGQFL----------------- 355
Query: 86 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCKGIFR 140
+ +E +V ++ T ND STL L+R GR ++ ++ AP RE+ IG+ FR
Sbjct: 356 --FWMQELTAKVFMVATANDVSTLPPELLRKGRFDELFFVDLPEAPDREEIIGLY---FR 410
Query: 141 NDNVAD------DDIVKLVDTFPGQSID-FFGALRARVYDD---------EVRKWISGV 183
A+ D+V L D F G ID + +VY D E++K+ + V
Sbjct: 411 KYLGAEPSQELLTDLVTLTDGFSGSDIDAVIHDIATKVYVDRMPGLPPEPEIKKFFTNV 469
>gi|448725635|ref|ZP_21708082.1| proteasome-activating nucleotidase [Halococcus morrhuae DSM 1307]
gi|445797859|gb|EMA48297.1| proteasome-activating nucleotidase [Halococcus morrhuae DSM 1307]
Length = 405
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I M+ EL GE A+L+R + ++ + + + I+++DA A + T T
Sbjct: 214 IKMAGSELVRKFIGEGARLVRDLF----ELASEHEPAVIFIDEIDAVASKR--TDSKTSG 267
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 125
+ V T+M + L M EE + II N F L ++R GR ++
Sbjct: 268 DAEVQRTMMQL--------LSEMDGFEERGDISIIAATNRFDMLDRAILRPGRFDRLIEV 319
Query: 126 PT-----REDRIGV-CKGIFRNDNVADDDIVKLVDTFPGQSID 162
P RE + +G+ +D+VA D++ ++ D F G I+
Sbjct: 320 PKPGPDGREKIFAIHTRGMNLDDDVAFDELAEMADEFSGAEIE 362
>gi|428221330|ref|YP_007105500.1| AAA ATPase [Synechococcus sp. PCC 7502]
gi|427994670|gb|AFY73365.1| AAA+ family ATPase [Synechococcus sp. PCC 7502]
Length = 515
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 25/166 (15%)
Query: 5 PIM-MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
P++ + G+L G+ RQ ++A I C L I+++D G + G + +
Sbjct: 295 PLLRLDVGKLFGSLLGQSESRTRQTIQQAEAI----SPCILWIDEIDKAFGGISGISMDS 350
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
+Q V ATL+ + +E+ V I+ T N+ L L+R GR ++ +
Sbjct: 351 GTSQRVFATLLT-------------WMQEKTSSVFIVATANNIHVLPPELLRKGRFDEIF 397
Query: 124 W--APTREDRIGVCK---GIFRNDNVAD--DDIVKLVDTFPGQSID 162
+ P E+R + K FR D+VA D I ++ + F G I+
Sbjct: 398 FINLPNYEERKQILKVHLQRFRPDSVAFDLDAIAQITEDFSGAEIE 443
>gi|331699452|ref|YP_004335691.1| Microtubule-severing ATPase [Pseudonocardia dioxanivorans CB1190]
gi|326954141|gb|AEA27838.1| Microtubule-severing ATPase [Pseudonocardia dioxanivorans CB1190]
Length = 802
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 20/148 (13%)
Query: 3 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQY 62
+N + + EL GE + +R+ +R+A+D + ++++DA A R GG+T
Sbjct: 599 LNVLSVKGAELLDKYVGESERAVRELFRKASD----AAPALVFLDEVDALAPRRGGSTDS 654
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP-LIRDGRMEK 121
V +++V A L + + + R ++V + L P L+R GR+E+
Sbjct: 655 GVADRVVAALLTEL-------------DGAQPLREVVVVGATNRPELIDPALLRPGRLER 701
Query: 122 FYWAPT--REDRIGVCKGIFRNDNVADD 147
+ P E R + + RN +ADD
Sbjct: 702 LVYVPPPDAEARAAILRAAGRNTPLADD 729
>gi|68565625|sp|P84562.1|RCA_POPEU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase
Length = 32
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 29/60 (48%), Gaps = 28/60 (46%)
Query: 152 LVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEK 211
LVDTFPGQSIDFFGALR E PTFEQP MT+EK
Sbjct: 1 LVDTFPGQSIDFFGALR----------------------------EGPPTFEQPAMTIEK 32
>gi|89894709|ref|YP_518196.1| hypothetical protein DSY1963 [Desulfitobacterium hafniense Y51]
gi|89334157|dbj|BAE83752.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 491
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK--MCCLMINDLDAGAGRMGGTTQYT 63
+ +S E AG A +R+ +++A ++ KK K + I+++D + G +
Sbjct: 125 LAVSGSEFVEMYAGVGADRVRRLFKKARELAKKEKKDRAIIFIDEMDILGAKRGSNVSHH 184
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
+Q +N L V++ G+ N E+ P++ +I N L L+R GR ++
Sbjct: 185 EYDQTLNQLL---------VEMDGLGNSEQGPKILMIAATNRAEALDPALVRPGRFDRLV 235
Query: 124 WA--PTREDRIGVCKGIFRNDNVA 145
P +E R+ + K +N +A
Sbjct: 236 KVDLPDKEGRLAILKIHTKNKPLA 259
>gi|423074649|ref|ZP_17063374.1| ATP-dependent metallopeptidase HflB [Desulfitobacterium hafniense
DP7]
gi|361854469|gb|EHL06535.1| ATP-dependent metallopeptidase HflB [Desulfitobacterium hafniense
DP7]
Length = 493
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK--MCCLMINDLDAGAGRMGGTTQYT 63
+ +S E AG A +R+ +++A ++ KK K + I+++D + G +
Sbjct: 127 LAVSGSEFVEMYAGVGADRVRRLFKKARELAKKEKKDRAIIFIDEMDILGAKRGSNVSHH 186
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
+Q +N L V++ G+ N E+ P++ +I N L L+R GR ++
Sbjct: 187 EYDQTLNQLL---------VEMDGLGNSEQGPKILMIAATNRAEALDPALVRPGRFDRLV 237
Query: 124 WA--PTREDRIGVCKGIFRNDNVA 145
P +E R+ + K +N +A
Sbjct: 238 KVDLPDKEGRLAILKIHTKNKPLA 261
>gi|11498895|ref|NP_070126.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304]
gi|41688749|sp|O28972.1|Y1297_ARCFU RecName: Full=Cell division cycle protein 48 homolog AF_1297
gi|2649281|gb|AAB89948.1| cell division control protein 48, AAA family (cdc48-1)
[Archaeoglobus fulgidus DSM 4304]
Length = 733
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 19/160 (11%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + EL S GE K +R+ +R+A + C + +++D+ A R GG
Sbjct: 516 NFISVKGPELLSKWVGESEKHVREMFRKARQVAP----CVIFFDEIDSLAPRRGGIGDSH 571
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++V+ L +L G+ EE V +I N + L+R GR+E+
Sbjct: 572 VTERVVSQLL---------TELDGL---EELKDVVVIAATNRPDMIDPALLRPGRLERHI 619
Query: 124 WAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ P ++ R+ + K R +ADD +I +L + G S
Sbjct: 620 YIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYS 659
>gi|225021604|ref|ZP_03710796.1| hypothetical protein CORMATOL_01626 [Corynebacterium matruchotii
ATCC 33806]
gi|305680771|ref|ZP_07403578.1| ATPase, AAA family [Corynebacterium matruchotii ATCC 14266]
gi|224945595|gb|EEG26804.1| hypothetical protein CORMATOL_01626 [Corynebacterium matruchotii
ATCC 33806]
gi|305658976|gb|EFM48476.1| ATPase, AAA family [Corynebacterium matruchotii ATCC 14266]
Length = 516
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 24/144 (16%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
Q REA + ++ C L I++++ G G+ +V +++ L
Sbjct: 312 QNLREALETAERMAPCVLWIDEIEKGLA--TGSGDSSVTKRLIGQFLF------------ 357
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT---REDRIGVCKGIFRN 141
+ +E +V I+ T ND STL L+R GR ++ ++ PT R D I +C + N
Sbjct: 358 --WLQESQAKVFIVATANDVSTLPPELLRKGRFDEIFFVDLPTETERTDIIDLCFWKYTN 415
Query: 142 DNVADDDIVKLVDT---FPGQSID 162
+ + +L + F G ID
Sbjct: 416 HAIPSHLVAELAEVSEGFAGSDID 439
>gi|378729074|gb|EHY55533.1| adenosinetriphosphatase [Exophiala dermatitidis NIH/UT8656]
Length = 814
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 32/210 (15%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+N I +SA + SG +GE K +R + EA K+ C + I+++DA + +
Sbjct: 259 LGVNFISISAPSIVSGMSGESEKALRDHFDEA----KRAAPCLIFIDEIDAITPKR-ESA 313
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L L R GR +
Sbjct: 314 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDVALRRGGRFD 365
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGALRARVYDDEVR 177
K P R + + + R N+ADD D L PG F GA ++
Sbjct: 366 KEINMSVPNEPVREQILRALTRETNLADDVDFSLLAKRTPG----FVGA--------DLN 413
Query: 178 KWISGVGVGSIGKSL----VNSKEAAPTFE 203
+S G +I + L NS+ A T +
Sbjct: 414 DLVSTAGAAAIKRYLDTLKANSEAATATMD 443
>gi|289192266|ref|YP_003458207.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
FS406-22]
gi|288938716|gb|ADC69471.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
FS406-22]
Length = 903
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 24/168 (14%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + E+ S GE K IR+ +R+A ++ C + +++DA A + G
Sbjct: 511 GANFISVKGPEIFSKWVGESEKAIREIFRKA----RQSAPCIIFFDEIDAIAPKRGRDLS 566
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP-LIRDGRME 120
V +++VN L +L GM E P+ I++ + + P L+R GR++
Sbjct: 567 SAVTDKVVNQLL---------TELDGM----EEPKDVIVIAATNRPDIIDPALLRPGRLD 613
Query: 121 KFYWAPTRED--RIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 162
+ P ++ R+ + K R N+A+D ++ K + + G I+
Sbjct: 614 RVILVPVPDEKARLDIFKIHTRAMNLAEDVSLEELAKKTEGYTGADIE 661
>gi|327400638|ref|YP_004341477.1| AAA family ATPase [Archaeoglobus veneficus SNP6]
gi|327316146|gb|AEA46762.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus veneficus SNP6]
Length = 734
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + EL S GE K +R+ +R+A + C L +++D+ A R GG
Sbjct: 517 NFISVKGPELLSKWVGESEKHVREMFRKARQVAP----CVLFFDEIDSLAPRRGGGADSH 572
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++V+ L +L GM EE V +I N + L+R GR+E+
Sbjct: 573 VTERVVSQLL---------TELDGM---EELKDVVVIAATNRPDIVDPALLRPGRIERHI 620
Query: 124 WAPT--REDRIGVCKGIFRNDNVADD 147
+ P ++ R + K R +ADD
Sbjct: 621 YIPPPDKKARKEIFKIHLRGKPLADD 646
>gi|1478008|gb|AAB36380.1| gibberellin A-binding protein, GABP=47 kda
ribulose-1,5-bisphosphate carboxylase/oxygenase
activase homolog [Oryza sativa=rice, leaves, Peptide,
56 aa]
Length = 56
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 14 ESGNAGEPAKLIRQRYREAAD 34
ESGNAGEPAKLIRQRYREAAD
Sbjct: 23 ESGNAGEPAKLIRQRYREAAD 43
>gi|256810701|ref|YP_003128070.1| AAA ATPase [Methanocaldococcus fervens AG86]
gi|256793901|gb|ACV24570.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens
AG86]
Length = 903
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + E+ S GE K IR+ +R+A ++ C + +++DA A + G
Sbjct: 511 GANFISVKGPEIFSKWVGESEKAIREIFRKA----RQSAPCIIFFDEIDAIAPKRGRDLS 566
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
V +++VN L +L GM EE V +I N + L+R GR+++
Sbjct: 567 SAVTDKVVNQLL---------TELDGM---EEPKDVVVIAATNRPDIIDPALLRPGRLDR 614
Query: 122 FYWAPTRED--RIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 162
P ++ R+ + K R N+A+D ++ K + + G I+
Sbjct: 615 VILVPVPDEKARLDIFKIHTRGMNLAEDVDLEELAKKTEGYTGADIE 661
>gi|333910254|ref|YP_004483987.1| ATPase AAA [Methanotorris igneus Kol 5]
gi|333750843|gb|AEF95922.1| AAA family ATPase, CDC48 subfamily [Methanotorris igneus Kol 5]
Length = 732
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 19/160 (11%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + E+ S GE K IR+ +R+A ++ C + +++D+ A R G
Sbjct: 513 NFISVKGPEIFSKWVGESEKAIREIFRKA----RQTAPCIIFFDEIDSIAPRRGSGHDSG 568
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++VN L +L G+ EE V +I N L L+R GR+++
Sbjct: 569 VTEKVVNQLL---------TELDGL---EEPKDVVVIAATNRPDILDPALLRPGRLDRIV 616
Query: 124 W--APTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
AP ++ R+ + K R +ADD D+ KL + G +
Sbjct: 617 LVPAPDKKARLAIFKVHTRKMPLADDVDLEKLAEKTEGYT 656
>gi|262067243|ref|ZP_06026855.1| ATPase, AAA family [Fusobacterium periodonticum ATCC 33693]
gi|291379036|gb|EFE86554.1| ATPase, AAA family [Fusobacterium periodonticum ATCC 33693]
Length = 523
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 22/129 (17%)
Query: 42 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 101
C L I++++ G G + V+ +MV L + +E +V ++
Sbjct: 331 CILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF--------------WLQESKKQVFVVA 376
Query: 102 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD------DDIVKLV 153
T ND S L + L+R GR ++ ++ PT E+R + K R D D IV++
Sbjct: 377 TANDVSMLPSELLRRGRFDELFFIDLPTTEERYDIIKMYMRKYLSLDFTGELADRIVEMT 436
Query: 154 DTFPGQSID 162
D F G ++
Sbjct: 437 DGFTGADLE 445
>gi|258568646|ref|XP_002585067.1| ribosome biogenesis ATPase RIX7 [Uncinocarpus reesii 1704]
gi|237906513|gb|EEP80914.1| ribosome biogenesis ATPase RIX7 [Uncinocarpus reesii 1704]
Length = 741
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 32/232 (13%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA K+ C + I+++DA + +
Sbjct: 232 LGVPFISISAPSIVSGMSGESEKALREHFDEA----KRAAPCLVFIDEIDAITPKR-ESA 286
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L L R GR +
Sbjct: 287 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDPALRRGGRFD 338
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGALRARVYDDEVR 177
K P+ R + + + RN N+A+D D L PG F GA ++
Sbjct: 339 KEINLSVPSEPVREQILRTLTRNMNLANDLDFALLAKRTPG----FVGA--------DLN 386
Query: 178 KWISGVGVGSIGKSLVNSK---EAAPTFEQPRMTME-KLLEYGNMIVQEQEN 225
+S G +I + L + K + E+P + K+LE +I + +E
Sbjct: 387 DLVSTAGTAAIKRYLEHLKALGDEEMDIEEPHNNISPKILELRRLIKRARET 438
>gi|261403322|ref|YP_003247546.1| ATPase AAA [Methanocaldococcus vulcanius M7]
gi|261370315|gb|ACX73064.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius
M7]
Length = 903
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 22/167 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + E+ S GE K IR+ +R+A ++ C + +++DA A + G
Sbjct: 511 GANFISVKGPEIFSKWVGESEKAIREIFRKA----RQSAPCIIFFDEIDAIAPKRGRDLS 566
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
V +++VN L +L GM EE V +I N + + L+R GR+++
Sbjct: 567 SAVTDKVVNQLL---------TELDGM---EEPKDVIVIAATNRPDIIDSALLRPGRLDR 614
Query: 122 FYWAPTRED--RIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 162
P ++ R+ + K R+ N+ +D ++ K + + G I+
Sbjct: 615 VILVPVPDEKARLDILKIHTRSMNLDEDVNLEELAKKTEGYTGADIE 661
>gi|326432763|gb|EGD78333.1| hypothetical protein PTSG_09399 [Salpingoeca sp. ATCC 50818]
Length = 864
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + EL + GE + +RQ + A K C + ++LDA R G +
Sbjct: 633 NFISIKGPELMNKFVGESERAVRQLFTRA----KTSSPCVVFFDELDALCPRRGDASSSR 688
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V+ ++VN L V+L G + EE ++ +I N + ++R GR+EK
Sbjct: 689 VSERIVNQLL---------VELDGFDSGEE--KIFVIGATNRIDIIDPAMLRPGRLEKLV 737
Query: 124 WA--PTREDRIGVCKGIFRNDNVADD 147
+ P + R + K RN ++A D
Sbjct: 738 YVDLPDQHARAEIFKTQARNISLAPD 763
>gi|401015370|gb|AFP89349.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase, partial
[Prunus persica]
Length = 23
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/22 (95%), Positives = 22/22 (100%)
Query: 1 MGINPIMMSAGELESGNAGEPA 22
MGI+PIMMSAGELESGNAGEPA
Sbjct: 2 MGISPIMMSAGELESGNAGEPA 23
>gi|358466313|ref|ZP_09176148.1| hypothetical protein HMPREF9093_00618 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069173|gb|EHI79116.1| hypothetical protein HMPREF9093_00618 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 523
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 22/129 (17%)
Query: 42 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 101
C L I++++ G G + V+ +MV L + +E +V ++
Sbjct: 331 CILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF--------------WLQESKKQVFVVA 376
Query: 102 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD------DDIVKLV 153
T ND S L + L+R GR ++ ++ PT E+R + K R D D IV++
Sbjct: 377 TANDVSMLPSELLRRGRFDELFFIDLPTTEERHDIIKMYMRKYLSLDFTGELADRIVEMT 436
Query: 154 DTFPGQSID 162
D F G ++
Sbjct: 437 DGFTGADLE 445
>gi|290976655|ref|XP_002671055.1| predicted protein [Naegleria gruberi]
gi|284084620|gb|EFC38311.1| predicted protein [Naegleria gruberi]
Length = 883
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 22/163 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + EL + GE + +RQ + AA C + +++DA + +
Sbjct: 611 GANFISIKGPELLNKYVGESERAVRQVFSRAA----ASSPCVIFFDEMDALCPKRDNESS 666
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
+ ++VN L M E V +I N + + ++R GR++K
Sbjct: 667 SQSSERVVNQLLT------------AMDGLESRGMVFVIAATNRPDMIDSAMLRPGRLDK 714
Query: 122 FYWA--PTREDRIGVCKGIFRNDNVADD----DIVKLVDTFPG 158
+ P ++RI V K I R +A D +I KL + F G
Sbjct: 715 LLYVKLPNEQERISVLKTIARKTPLASDVNLEEIAKLCENFSG 757
>gi|110669061|ref|YP_658872.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
walsbyi DSM 16790]
gi|385804649|ref|YP_005841049.1| AAA ATPase [Haloquadratum walsbyi C23]
gi|109626808|emb|CAJ53276.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi DSM 16790]
gi|339730141|emb|CCC41459.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi C23]
Length = 742
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 22/165 (13%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + +L S GE K IRQ +R+A + + ++LD+ A GG T
Sbjct: 523 NFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SPTVIFFDELDSLAPSRGGGTGNN 578
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V+ ++VN L +L G+ EEN V ++ N + LIR GR ++
Sbjct: 579 VSERVVNQLL---------TELDGL---EENGNVMVVAATNRPDMIDPALIRSGRFDRLV 626
Query: 124 W--APTREDRIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 162
P E R + K RN +A D +I ++ D + G ++
Sbjct: 627 LIGQPGEEGREQILKIHTRNSPLAPDVSLREIAEITDGYVGSDLE 671
>gi|334135697|ref|ZP_08509178.1| ATPase, AAA family [Paenibacillus sp. HGF7]
gi|333606759|gb|EGL18092.1| ATPase, AAA family [Paenibacillus sp. HGF7]
Length = 521
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 28 RYREAADIIKKGKMCCLMINDLDAG-AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
R +EA C L I++++ G AG +G + + +MV L
Sbjct: 312 RLKEALSTADHVSPCVLWIDEIEKGLAGAIGASNDGGTSTRMVGQFLF------------ 359
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTRED--RIGVCKGIF 139
+ +E RV ++ T ND S L L+R GR ++ ++ A RED +I + KG+
Sbjct: 360 --WLQESMARVFVVATANDVSKLPPELLRRGRFDELFFVDLPTAKEREDIIKIYIEKGL- 416
Query: 140 RNDNVADDDIVKLVDTFPGQSIDFFGA-LRARVYD 173
NV+ D + KLV G F GA L A V D
Sbjct: 417 -KTNVSPDLLEKLVHISEG----FAGADLEAAVRD 446
>gi|148508161|gb|ABQ75952.1| AAA-type ATPase [uncultured haloarchaeon]
Length = 752
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 22/165 (13%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + +L S GE K IRQ +R+A + + ++LD+ A GG T
Sbjct: 533 NFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SPTVIFFDELDSLAPSRGGGTGNN 588
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V+ ++VN L +L G+ EEN V ++ N + LIR GR ++
Sbjct: 589 VSERVVNQLL---------TELDGL---EENGNVMVVAATNRPDMIDPALIRSGRFDRLV 636
Query: 124 W--APTREDRIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 162
P E R + K RN +A D +I ++ D + G ++
Sbjct: 637 LIGQPGEEGREQILKIHTRNSPLAPDVSLREIAEITDGYVGSDLE 681
>gi|15669345|ref|NP_248150.1| cell division protein CDC48 [Methanocaldococcus jannaschii DSM
2661]
gi|2492505|sp|Q58556.1|Y1156_METJA RecName: Full=Cell division cycle protein 48 homolog MJ1156
gi|1591785|gb|AAB99153.1| cell division control protein 48 (cdc48), AAA family
[Methanocaldococcus jannaschii DSM 2661]
Length = 903
Score = 44.7 bits (104), Expect = 0.053, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 22/167 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + E+ S GE K IR+ +R+A ++ C + +++DA A + G
Sbjct: 511 GANFISVKGPEIFSKWVGESEKAIREIFRKA----RQSAPCIIFFDEIDAIAPKRGRDLS 566
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
V +++VN L +L GM EE V +I N + L+R GR+++
Sbjct: 567 SAVTDKVVNQLL---------TELDGM---EEPKDVVVIAATNRPDIIDPALLRPGRLDR 614
Query: 122 FYWAPTRED--RIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 162
P ++ R+ + K R+ N+A+D ++ K + + G I+
Sbjct: 615 VILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTEGYTGADIE 661
>gi|356517889|ref|XP_003527618.1| PREDICTED: 26S protease regulatory subunit 10B homolog A-like
[Glycine max]
Length = 387
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 20/146 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ ++ A + + C + ++++DA AGR + + ++ + TL + +
Sbjct: 212 GESARLIREMFKYA----RNHQPCIIFMDEIDAIAGRRSSNRKGS--DREIQRTLKELLN 265
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 136
QL G+ + E +V II+ N L L+R GR+++ P R+ R+ + K
Sbjct: 266 -----QLDGLNHLE---KVKIIMATNRLDVLDPALLRHGRIDRKIEITLPNRKSRMEIFK 317
Query: 137 ----GIFRNDNVADDDIVKLVDTFPG 158
G+ + + + +VKL + F G
Sbjct: 318 IHAEGVTKRGEIDYEAVVKLAEGFNG 343
>gi|424896405|ref|ZP_18319979.1| AAA+ family ATPase [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393180632|gb|EJC80671.1| AAA+ family ATPase [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 298
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 22/171 (12%)
Query: 15 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 74
SG GE LI Q +++ + K K L+I++ D+ A + + VN +
Sbjct: 115 SGMVGEMGTLISQAFQQVIKAVGKNKRAILIIDEGDSLAANRSQEHSHHEDKVAVNTLIQ 174
Query: 75 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 134
+I D + N R+ +I+ N S L L R + + + PT E+R
Sbjct: 175 HIDDL-----------RRFNGRILVILCTNRLSVLDPALRRRAAVVRAFSRPTPEER--- 220
Query: 135 CKGIFRND----NVADDDIVKLVD-TFP--GQSIDFFGALRARVYDDEVRK 178
K +F +D N + DD+ KLV T P Q + +R R+Y + K
Sbjct: 221 -KALFSSDLAALNPSADDLAKLVAITGPRADQPTWTYSDIRTRLYPQALAK 270
>gi|34762147|ref|ZP_00143155.1| AAA family ATPase [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|27888224|gb|EAA25282.1| AAA family ATPase [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 523
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 22/144 (15%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV 144
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMRKYLS 421
Query: 145 AD------DDIVKLVDTFPGQSID 162
D D IV + + F G ++
Sbjct: 422 LDFAGELADKIVNMTEGFTGADLE 445
>gi|256846870|ref|ZP_05552324.1| AAA family ATPase [Fusobacterium sp. 3_1_36A2]
gi|256717668|gb|EEU31227.1| AAA family ATPase [Fusobacterium sp. 3_1_36A2]
Length = 523
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 22/144 (15%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV 144
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMRKYLS 421
Query: 145 AD------DDIVKLVDTFPGQSID 162
D D IV + + F G ++
Sbjct: 422 LDFAGELADKIVNMTEGFTGADLE 445
>gi|237742898|ref|ZP_04573379.1| AAA family ATPase [Fusobacterium sp. 4_1_13]
gi|421144253|ref|ZP_15604169.1| ATPase AAA [Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
gi|229430546|gb|EEO40758.1| AAA family ATPase [Fusobacterium sp. 4_1_13]
gi|395489354|gb|EJG10193.1| ATPase AAA [Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
Length = 523
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 22/144 (15%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV 144
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMRKYLS 421
Query: 145 AD------DDIVKLVDTFPGQSID 162
D D IV + + F G ++
Sbjct: 422 LDFAGELADKIVNMTEGFTGADLE 445
>gi|294784210|ref|ZP_06749505.1| AAA ATPase, central region [Fusobacterium sp. 3_1_27]
gi|294488076|gb|EFG35427.1| AAA ATPase, central region [Fusobacterium sp. 3_1_27]
Length = 523
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 22/144 (15%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV 144
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMRKYLS 421
Query: 145 AD------DDIVKLVDTFPGQSID 162
D D IV + + F G ++
Sbjct: 422 LDFAGELADKIVNMTEGFTGADLE 445
>gi|339627940|ref|YP_004719583.1| Vesicle-fusing ATPase [Sulfobacillus acidophilus TPY]
gi|379007573|ref|YP_005257024.1| Microtubule-severing ATPase [Sulfobacillus acidophilus DSM 10332]
gi|339285729|gb|AEJ39840.1| Vesicle-fusing ATPase [Sulfobacillus acidophilus TPY]
gi|361053835|gb|AEW05352.1| Microtubule-severing ATPase [Sulfobacillus acidophilus DSM 10332]
Length = 488
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 14/143 (9%)
Query: 9 SAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLM-INDLDAGAGRMGGTTQYTVNN 66
S E AG A+ +RQ +R+A + K+ G+ ++ I++++ AGR G + +
Sbjct: 130 SGSEFVEVYAGVGAQRVRQLFRDARSLAKREGRQSAIIFIDEIEVMAGRRGQHQSHLEYD 189
Query: 67 QMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 125
Q +N L V++ GM E+ R+ +I N L L+R GR ++
Sbjct: 190 QTLNQLL---------VEMDGMAT-HEDVRILVIAATNRADLLDPALMRPGRFDRLVRVD 239
Query: 126 -PTREDRIGVCKGIFRNDNVADD 147
P RE R + +N +ADD
Sbjct: 240 LPDREGREAILALHTQNKPMADD 262
>gi|289766162|ref|ZP_06525540.1| AAA family ATPase [Fusobacterium sp. D11]
gi|289717717|gb|EFD81729.1| AAA family ATPase [Fusobacterium sp. D11]
Length = 523
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 22/144 (15%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV 144
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMRKYLS 421
Query: 145 AD------DDIVKLVDTFPGQSID 162
D D IV + + F G ++
Sbjct: 422 LDFTGELADKIVNMTEGFTGADLE 445
>gi|118393771|ref|XP_001029293.1| ATPase, AAA family protein [Tetrahymena thermophila]
gi|89283465|gb|EAR81630.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 702
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + EL + GE K +RQ + A K C + ++LDA + GG +
Sbjct: 487 NFISVKGPELLNKYVGESEKSVRQVFSRA----KASAPCIIFFDELDALVPKRGGDSTNQ 542
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++VN+ L +L G +++ V +I N + ++R GR++K
Sbjct: 543 VTERVVNSLL---------AELDGFEGRKQ---VYVIAATNRPDIIDPAILRGGRLDKLL 590
Query: 124 WA--PTREDRIGVCKGIFRNDNVADD 147
+ PT ++++ + + + R + D
Sbjct: 591 YVPLPTNDEKVSILEALIRKTPLEQD 616
>gi|325095497|gb|EGC48807.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus H88]
Length = 751
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA KK C + I+++DA + +
Sbjct: 235 LGVPFIAISAPSIVSGMSGESEKALREHFDEA----KKVAPCLIFIDEIDAITPKR-ESA 289
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 290 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 341
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + R+ N+ADD D L PG F GA
Sbjct: 342 KEINLTVPSEPVREQILRTLTRDMNLADDLDFKLLAKRTPG----FVGA 386
>gi|225557765|gb|EEH06050.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus G186AR]
Length = 751
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA KK C + I+++DA + +
Sbjct: 235 LGVPFIAISAPSIVSGMSGESEKALREHFDEA----KKVAPCLIFIDEIDAITPKR-ESA 289
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 290 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 341
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + R+ N+ADD D L PG F GA
Sbjct: 342 KEINLTVPSEPVREQILRTLTRDMNLADDLDFKLLAKRTPG----FVGA 386
>gi|327402033|ref|YP_004342871.1| PKD domain-containing protein [Fluviicola taffensis DSM 16823]
gi|327317541|gb|AEA42033.1| PKD domain containing protein [Fluviicola taffensis DSM 16823]
Length = 649
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 269 GCTDPTAENFDPTARSDDGSCQY 291
GCTDP AEN+DPTA ++DGSC Y
Sbjct: 534 GCTDPLAENYDPTAVANDGSCNY 556
>gi|240274120|gb|EER37638.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus H143]
Length = 751
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA KK C + I+++DA + +
Sbjct: 235 LGVPFIAISAPSIVSGMSGESEKALREHFDEA----KKVAPCLIFIDEIDAITPKR-ESA 289
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 290 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 341
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + R+ N+ADD D L PG F GA
Sbjct: 342 KEINLTVPSEPVREQILRTLTRDMNLADDLDFKLLAKRTPG----FVGA 386
>gi|212528130|ref|XP_002144222.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Talaromyces marneffei ATCC 18224]
gi|210073620|gb|EEA27707.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Talaromyces marneffei ATCC 18224]
Length = 741
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 109/259 (42%), Gaps = 38/259 (14%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA KK C + I+++DA + +
Sbjct: 233 LGVPFISISAPSIVSGMSGESEKALREHFDEA----KKVAPCLIFIDEIDAITPKR-ESA 287
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L L R GR +
Sbjct: 288 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDPALRRGGRFD 339
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGALRARVYDDEVR 177
K P+ R + + + R +ADD D L G F GA ++
Sbjct: 340 KEINLTVPSEPVREQILRTLTRKMQLADDLDFSTLAKRTAG----FVGA--------DLN 387
Query: 178 KWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLS 237
+S G +I + L E + M +E + E + E VK ++ K+
Sbjct: 388 DLVSTAGAAAIKRYL----ELLKSNTGEEMDIEDMTEQ-----EATEKVKEIRRLIKHAK 438
Query: 238 EAALG-EANEDAIQSGNFY 255
EA +G E+N + + +F+
Sbjct: 439 EAPIGQESNPVLVSNADFF 457
>gi|422314849|ref|ZP_16396300.1| hypothetical protein FPOG_00580 [Fusobacterium periodonticum D10]
gi|404593275|gb|EKA94845.1| hypothetical protein FPOG_00580 [Fusobacterium periodonticum D10]
Length = 523
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 22/129 (17%)
Query: 42 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 101
C L I++++ G G + V+ +MV L + +E +V ++
Sbjct: 331 CILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF--------------WLQESKKQVFVVA 376
Query: 102 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD------DDIVKLV 153
T ND S L + L+R GR ++ ++ PT E+R + K R D D IV++
Sbjct: 377 TANDVSMLPSELLRRGRFDELFFIDLPTAEERYDIIKMYMRKYLSLDFAGELADRIVEMT 436
Query: 154 DTFPGQSID 162
+ F G ++
Sbjct: 437 EGFTGADLE 445
>gi|340754488|ref|ZP_08691240.1| hypothetical protein FSAG_02050 [Fusobacterium sp. 2_1_31]
gi|229423993|gb|EEO39040.1| hypothetical protein FSAG_02050 [Fusobacterium sp. 2_1_31]
Length = 523
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 22/129 (17%)
Query: 42 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 101
C L I++++ G G + V+ +MV L + +E +V ++
Sbjct: 331 CILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF--------------WLQESKKQVFVVA 376
Query: 102 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD------DDIVKLV 153
T ND S L + L+R GR ++ ++ PT E+R + K R D D IV++
Sbjct: 377 TANDVSMLPSELLRRGRFDELFFIDLPTAEERYDIIKMYMRKYLSLDFAGELADRIVEMT 436
Query: 154 DTFPGQSID 162
+ F G ++
Sbjct: 437 EGFTGADLE 445
>gi|308798689|ref|XP_003074124.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
gi|116000296|emb|CAL49976.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
Length = 723
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA--GAGRMGGT 59
G + +S+G++ AGE K +R+ + A ++KKG C ++I++LDA R G
Sbjct: 266 GAETLTVSSGDVAGAYAGESEKRLRKVFERARKLVKKGSPCVIVIDELDAMCPTRRDGNA 325
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
+ V Q++ TLM+ A + V VP++ T + + + L R GR
Sbjct: 326 HEARVVAQLL--TLMDGAGESSEVH------------VPVVATTSRPNAIDPALRRPGRF 371
Query: 120 EK 121
++
Sbjct: 372 DR 373
>gi|254167175|ref|ZP_04874028.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
gi|197624031|gb|EDY36593.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
Length = 394
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 43/205 (20%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTV 64
I EL GE AKL+R+ + D+ +K + I+++DA GA R+ T
Sbjct: 201 IRTVGSELVRKYIGEGAKLVRELF----DLARKKAPSIVFIDEIDAIGARRLDMATS--- 253
Query: 65 NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 124
++ V TLM + +L G E V II N L L+R GR ++
Sbjct: 254 GDREVQRTLMQL-----LAELDGF---EPLDNVKIIAATNRPDILDEALLRPGRFDRIIQ 305
Query: 125 AP--TREDRIGVCKGIFRNDNVAD---DDIVKLVDTFPGQSI------------------ 161
P E RI + K R N+ D + I K D F G +
Sbjct: 306 VPYPDYEARIEILKIHTRRMNLKDVNLEKIAKKTDGFSGADLKVICMEAGMFAIRDERDY 365
Query: 162 ----DFFGALRARVYDDEVRKWISG 182
DF A+R ++ D++RK I G
Sbjct: 366 VTQEDFENAIRKFLHADDLRKEIPG 390
>gi|448738116|ref|ZP_21720147.1| proteasome-activating nucleotidase [Halococcus thailandensis JCM
13552]
gi|445802700|gb|EMA53004.1| proteasome-activating nucleotidase [Halococcus thailandensis JCM
13552]
Length = 405
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I M+ EL GE A+L+R + ++ + + + I+++DA A + T T
Sbjct: 214 IKMAGSELVRKFIGEGARLVRDLF----ELASEHEPAVIFIDEIDAVASKR--TDSKTSG 267
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 125
+ V T+M + L M E+ + II N F L ++R GR ++
Sbjct: 268 DAEVQRTMMQL--------LSEMDGFEDRGDISIIAATNRFDMLDRAILRPGRFDRLIEV 319
Query: 126 PT-----REDRIGV-CKGIFRNDNVADDDIVKLVDTFPGQSID 162
P RE + +G+ D+V D++ + D F G I+
Sbjct: 320 PKPGPDGREKIFAIHTRGMNLADDVEFDELATMADEFSGAEIE 362
>gi|239609886|gb|EEQ86873.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis ER-3]
Length = 751
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA KK C + I+++DA + +
Sbjct: 235 LGVPFIAISAPSIVSGMSGESEKALREHFDEA----KKVAPCLIFIDEIDAITPKR-ESA 289
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 290 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 341
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + ++ N+ADD D L PG F GA
Sbjct: 342 KEINLTVPSEPVREQILRALTKDMNLADDLDFKLLAKRTPG----FVGA 386
>gi|261198899|ref|XP_002625851.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis SLH14081]
gi|239595003|gb|EEQ77584.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis SLH14081]
Length = 751
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA KK C + I+++DA + +
Sbjct: 235 LGVPFIAISAPSIVSGMSGESEKALREHFDEA----KKVAPCLIFIDEIDAITPKR-ESA 289
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 290 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 341
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + ++ N+ADD D L PG F GA
Sbjct: 342 KEINLTVPSEPVREQILRALTKDMNLADDLDFKLLAKRTPG----FVGA 386
>gi|325000843|ref|ZP_08121955.1| ATPase [Pseudonocardia sp. P1]
Length = 420
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 21/162 (12%)
Query: 3 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQY 62
+N + EL GE + +R+ +R AA + + ++++DA A R GG+T
Sbjct: 218 LNVFAVKGAELLDKYVGESERAVRELFRRAA----EAAPALIFLDEVDALAPRRGGSTDA 273
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP-LIRDGRMEK 121
V +++V A L + D T + R ++V + L P L+R GR+E+
Sbjct: 274 GVADRVVAALLTEL-DGATPL------------REVVVVGATNRPELIDPALLRPGRLER 320
Query: 122 FYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ P E R + + R+ +ADD D+ L G S
Sbjct: 321 LVFVPPPDAEARADILRASGRDVPLADDVDLDALASDLDGYS 362
>gi|344230035|gb|EGV61920.1| hypothetical protein CANTEDRAFT_107330 [Candida tenuis ATCC 10573]
Length = 835
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 29/198 (14%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + EL + GE + IRQ ++ A + C + ++LDA R + +
Sbjct: 594 NFISIKGPELLNKYVGESERAIRQVFQRA----RASVPCIIFFDELDALVPRRDASLSES 649
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEK 121
++++VN L +L G+ N R I V G N + +IR GR++K
Sbjct: 650 -SSRVVNTLL---------TELDGL-----NDRKGIFVIGATNRPDMIDPAMIRPGRLDK 694
Query: 122 FYW--APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI-DFFGA-LRARVYDDEV- 176
+ PT E+R+ + K + +++ D+ V L D Q +F GA L + V + V
Sbjct: 695 SLYIELPTEEERLDILKTLIKSNGTPIDESVNLKDIVYNQKCRNFSGADLSSLVREAGVI 754
Query: 177 ---RKWISGVGVGSIGKS 191
RK+ VG + KS
Sbjct: 755 ALKRKFFHHQKVGDLDKS 772
>gi|365986426|ref|XP_003670045.1| hypothetical protein NDAI_0D04890 [Naumovozyma dairenensis CBS 421]
gi|343768814|emb|CCD24802.1| hypothetical protein NDAI_0D04890 [Naumovozyma dairenensis CBS 421]
Length = 870
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 23/166 (13%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I +SA + SG +GE K IR+ + EA K C + +++DA + G Q +
Sbjct: 287 ISISAPSVVSGMSGESEKKIRELFEEA----KALAPCLMFFDEIDAITPKRDGGAQREME 342
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFY 123
++V A L+ D T Q G P+IV G N +L A L R GR ++
Sbjct: 343 RRIV-AQLLTSMDELTMEQTNGK---------PVIVIGATNRPDSLDAALRRAGRFDREI 392
Query: 124 W--APTREDRIGVCKGIFRNDNV-ADDDIVKLVDTFPGQSIDFFGA 166
P R+ + K + +N + D +KL PG F GA
Sbjct: 393 CLNVPNEVSRLHILKKMSQNLKIDGSIDFLKLAKLTPG----FVGA 434
>gi|313125329|ref|YP_004035593.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
gi|448287075|ref|ZP_21478291.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
gi|312291694|gb|ADQ66154.1| Proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
gi|445572821|gb|ELY27351.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
Length = 409
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I M+ EL GE A+L+R + AAD + + I+++DA A + T T
Sbjct: 214 IKMAGSELVRKFIGEGARLVRDLFELAAD----REPAVIFIDEIDAVASKR--TDSKTSG 267
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 125
+ V T+M + ++ G ++ E + I+ N F L ++R GR ++
Sbjct: 268 DAEVQRTMMQL-----LSEMDGFDDRGE---IRIMAATNRFDMLDEAILRPGRFDRLIEV 319
Query: 126 PTREDRIGVCKGI---FRNDNVADD-DIVKLVDTFPGQS 160
P D G+ K + R N+ADD D +L + GQS
Sbjct: 320 PN-PDPEGIVKILEIHTREMNIADDVDFEELAEELDGQS 357
>gi|402590003|gb|EJW83934.1| hypothetical protein WUBG_05154 [Wuchereria bancrofti]
Length = 397
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 29/181 (16%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A++IR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 217 GESARMIREMFNYARD----HQPCIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 270
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV II+ N TL L+R GR+++ P + R+ V K
Sbjct: 271 -----QMDGF---DSLGRVKIIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEVLK 322
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSID-------FFG--ALRARVYDDEVRKWISGV 183
I ++ ++ + +VKL D F G + F A R V D++ K + V
Sbjct: 323 IHASKITKHGDIDYEAVVKLSDGFSGADLRNVCTEAGLFAIRAEREYVIDEDFMKAVRKV 382
Query: 184 G 184
G
Sbjct: 383 G 383
>gi|376316134|emb|CCF99534.1| conserved hypothetical protein [uncultured Flavobacteriia
bacterium]
Length = 388
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 22/25 (88%)
Query: 268 EGCTDPTAENFDPTARSDDGSCQYT 292
EGCTDP A+N++ A++DDGSC+Y+
Sbjct: 24 EGCTDPLADNYNEDAKTDDGSCEYS 48
>gi|312068505|ref|XP_003137245.1| proteasome 26S subunit [Loa loa]
gi|307767590|gb|EFO26824.1| 26S protease regulatory subunit 10B [Loa loa]
Length = 397
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 29/181 (16%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A++IR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 217 GESARMIREMFNYARD----HQPCIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 270
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV II+ N TL L+R GR+++ P + R+ V K
Sbjct: 271 -----QMDGF---DSLGRVKIIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEVLK 322
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSID-------FFG--ALRARVYDDEVRKWISGV 183
I ++ ++ + +VKL D F G + F A R V D++ K + V
Sbjct: 323 IHASKITKHGDIDYEAVVKLSDGFSGADLRNVCTEAGLFAIRAEREYVIDEDFMKAVRKV 382
Query: 184 G 184
G
Sbjct: 383 G 383
>gi|225678278|gb|EEH16562.1| cdcH [Paracoccidioides brasiliensis Pb03]
Length = 801
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA KK C + I+++DA + +
Sbjct: 286 LGVPFIAISAPSIVSGMSGESEKALREHFEEA----KKVAPCLIFIDEIDAITPKR-ESA 340
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 341 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 392
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + ++ N+ADD D L PG F GA
Sbjct: 393 KEINLTVPSEPVREQILRVLTKDMNLADDLDFKLLAKRTPG----FVGA 437
>gi|220932030|ref|YP_002508938.1| Microtubule-severing ATPase [Halothermothrix orenii H 168]
gi|219993340|gb|ACL69943.1| Microtubule-severing ATPase [Halothermothrix orenii H 168]
Length = 490
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 9 SAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLM-INDLDAGAGRMGGTTQYTVNN 66
S E AG AK +RQ ++EA KK GK ++ I+++D G+ G T + +
Sbjct: 131 SGSEFIEMYAGLGAKRVRQLFKEARQSAKKYGKSSAIVFIDEIDVVGGKRGQVTSHLEYD 190
Query: 67 QMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 125
Q +N L V++ G+ +E ++ ++ T N L L+R GR ++
Sbjct: 191 QTLNQLL---------VEMDGLSVDDE-VQILVMATTNRIDILDPALLRPGRFDRIVQVD 240
Query: 126 -PTREDRIGVCKGIFRNDNVADD 147
P +E R+ + K N +A++
Sbjct: 241 LPAKEGRLSILKIHTSNKPLAEE 263
>gi|374635878|ref|ZP_09707467.1| AAA family ATPase, CDC48 subfamily [Methanotorris formicicus
Mc-S-70]
gi|373560840|gb|EHP87090.1| AAA family ATPase, CDC48 subfamily [Methanotorris formicicus
Mc-S-70]
Length = 732
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + E+ S GE K IR+ +R+A ++ + +++D+ A R G
Sbjct: 513 NFISVKGPEIFSKWVGESEKAIREIFRKA----RQTAPTVIFFDEIDSIAPRRGSGHDSG 568
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK-- 121
V ++VN L +L G+ EE V +I N L L+R GR+++
Sbjct: 569 VTEKVVNQLL---------TELDGL---EEPKDVVVIAATNRPDILDPALLRPGRLDRIV 616
Query: 122 FYWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
F AP ++ R+ + K +N +A+D D+ KL + G +
Sbjct: 617 FVPAPDKKTRLSIFKVHTKNMPLAEDVDLEKLAEKTEGYT 656
>gi|297181630|gb|ADI17814.1| hypothetical protein [uncultured Sphingobacteriales bacterium
HF0130_33B19]
Length = 623
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 257 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
A+ Q+ GCTDP A+N+D TA DDGSC YT+
Sbjct: 16 NASGQVGTCAVYGCTDPAADNYDATATVDDGSCTYTI 52
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 266 VPEGCTDPTAENFDPTARSDDGSCQY 291
+P+GCTDP A+N+D +A DDGSC Y
Sbjct: 278 LPDGCTDPNADNYDASALCDDGSCTY 303
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 266 VPEGCTDPTAENFDPTARSDDGSCQY 291
+P GCTDP A N+D +A DDGSC Y
Sbjct: 227 LPNGCTDPAASNYDASATCDDGSCTY 252
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 266 VPEGCTDPTAENFDPTARSDDGSC 289
+P+GCTDPTA N+D A DDGSC
Sbjct: 126 LPDGCTDPTASNYDANAVCDDGSC 149
>gi|170586148|ref|XP_001897842.1| Probable 26S protease regulatory subunit S10B [Brugia malayi]
gi|158594737|gb|EDP33319.1| Probable 26S protease regulatory subunit S10B, putative [Brugia
malayi]
Length = 467
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 29/181 (16%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A++IR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 217 GESARMIREMFNYARD----HQPCIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 270
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 136
Q+ G + RV II+ N TL L+R GR+++ P + R+ V K
Sbjct: 271 -----QMDGF---DSLGRVKIIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEVLK 322
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSID-------FFG--ALRARVYDDEVRKWISGV 183
I ++ ++ + +VKL D F G + F A R V D++ K + V
Sbjct: 323 IHASKITKHGDIDYEAVVKLSDGFSGADLRNVCTEAGLFAIRAEREYVIDEDFMKAVRKV 382
Query: 184 G 184
G
Sbjct: 383 G 383
>gi|158295544|ref|XP_316268.4| AGAP006205-PA [Anopheles gambiae str. PEST]
gi|157016089|gb|EAA10786.4| AGAP006205-PA [Anopheles gambiae str. PEST]
Length = 1020
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 27/176 (15%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
GIN I + EL + GE + +RQ ++ A + C + ++ D+ + T +
Sbjct: 791 GINFISVKGPELLNMYVGESERAVRQCFQRA----RNSAPCVIFFDEFDSLCPKRSDTAE 846
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
+ ++VN L M EE V ++ N + ++R GR++K
Sbjct: 847 GSAGTRVVNQLLTE------------MDGIEERKGVFLMAATNRPDIVDPAVLRPGRLDK 894
Query: 122 FYWA--PTREDRIGVCKGIFRN-------DNVADDDIVKLVDTFPGQSIDFFGALR 168
+ P +EDR+ + + + +N D+V + + +L + + G D G +R
Sbjct: 895 ILYVGLPAKEDRVDILRALTKNRTQPRLADDVELEKVAELTEGYTGA--DLAGLVR 948
>gi|68076831|ref|XP_680335.1| 26S proteasome regulatory subunit 7 [Plasmodium berghei strain
ANKA]
gi|56501247|emb|CAH95167.1| 26S proteasome regulatory subunit 7, putative [Plasmodium berghei]
Length = 420
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I + EL GE A+L+R+ ++ A K K C L I+++DA G G + +
Sbjct: 225 ICVIGSELVQKYVGEGARLVRELFQMA----KSKKACILFIDEVDAIGGSRGDESAH--G 278
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--Y 123
+ V T++ I + QL G N+ + +I+ N TL + L+R GR+++ +
Sbjct: 279 DHEVQRTMLEIVN-----QLDGFDNRGN---IKVIMATNRPDTLDSALVRPGRIDRKIEF 330
Query: 124 WAPTREDRIGVCK 136
P E R + K
Sbjct: 331 SLPDLEGRTHIFK 343
>gi|455649926|gb|EMF28716.1| ATPase [Streptomyces gancidicus BKS 13-15]
Length = 522
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 30/146 (20%)
Query: 28 RYREAADIIKKGKMCCLMINDLDAG-AGR--MGGTTQYTVNNQMVNATLMNIADNPTCVQ 84
R+REA + + C L I++++ G AG+ M G Q + +
Sbjct: 316 RFREALAMADRVAPCILWIDEIEKGLAGKDDMSGVPQRIIGQFL---------------- 359
Query: 85 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND 142
+ +E N R ++ T ND +L L+R GR ++ ++ P +DR + + FR
Sbjct: 360 ---FWLQESNSRAFVVATANDIRSLPPELLRKGRFDELFFVDLPDSQDRREIIELYFRRY 416
Query: 143 NVAD------DDIVKLVDTFPGQSID 162
D D +V + + F G I+
Sbjct: 417 LKIDPEPEQLDRLVDMSEGFAGSDIE 442
>gi|392866138|gb|EAS28750.2| ribosome biogenesis ATPase RIX7 [Coccidioides immitis RS]
Length = 741
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 32/231 (13%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA KK C + I+++DA + +
Sbjct: 232 LGVPFIAISAPSIVSGMSGESEKALREHFDEA----KKAAPCLVFIDEIDAITPKR-ESA 286
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L L R GR +
Sbjct: 287 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDPALRRGGRFD 338
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGALRARVYDDEVR 177
K P+ R + + + RN N+A+ D L PG F GA ++
Sbjct: 339 KEINLSVPSEPVREQILRTLTRNMNLANGLDFPLLAKRTPG----FVGA--------DLN 386
Query: 178 KWISGVGVGSIGKSLVNSKEAAPT---FEQPRMTME-KLLEYGNMIVQEQE 224
+S G +I + L + K E+P+ + K+LE +I + +E
Sbjct: 387 DLVSTAGTAAIKRYLDHLKSLGDEEMDIEEPQSNISPKILELRRLIRRARE 437
>gi|422340150|ref|ZP_16421104.1| AAA ATPase, central region [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370090|gb|EHG17478.1| AAA ATPase, central region [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 523
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 22/144 (15%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV 144
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMRKYLS 421
Query: 145 AD------DDIVKLVDTFPGQSID 162
D + IV + + F G ++
Sbjct: 422 LDFAGELANKIVDMTEGFTGADLE 445
>gi|147920787|ref|YP_685407.1| cell division cycle protein 48 [Methanocella arvoryzae MRE50]
gi|110620803|emb|CAJ36081.1| cell division cycle protein 48 [Methanocella arvoryzae MRE50]
Length = 743
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 24/167 (14%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ-- 61
N I + EL S GE K +R+ +R+A + + ++LDA A GG +
Sbjct: 524 NFINIRGPELLSKWVGESEKAVRETFRKARQV----SPSIIFFDELDALAPARGGGGEDG 579
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
V+ ++VN L + V+L G V +I N + L+R GR ++
Sbjct: 580 SRVSERVVNQILTELDG---LVELEG---------VVVIGASNRPDIIDPALLRPGRFDR 627
Query: 122 FYW--APTREDRIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 162
+ AP++E RIG+ K RN +A D I L + + G ++
Sbjct: 628 LVYVGAPSKEGRIGILKIHTRNMPLAADVDLGQIADLTENYVGSDLE 674
>gi|452846664|gb|EME48596.1| hypothetical protein DOTSEDRAFT_49041 [Dothistroma septosporum
NZE10]
Length = 710
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 22/169 (13%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ + + + SG +GE K +R R+ EA KK C L I+++DA A + T+
Sbjct: 202 LGVPFVEILGPSIVSGMSGESEKGVRDRFEEA----KKNAPCLLFIDEIDAIAPKR-ETS 256
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM- 119
Q + ++V L+++ + NKE P V ++ N +L L R GR
Sbjct: 257 QSQMEKRIVAQLLVSMDE----------INKEGGPPVIVLAATNRPDSLDPALRRGGRFG 306
Query: 120 -EKFYWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
E P + R + + R+ +A D D+VKL G F GA
Sbjct: 307 TEININVPNEQVRQSILETQTRSMTLAADVDLVKLAKDTAG----FVGA 351
>gi|421527143|ref|ZP_15973747.1| ATPase AAA [Fusobacterium nucleatum ChDC F128]
gi|402256577|gb|EJU07055.1| ATPase AAA [Fusobacterium nucleatum ChDC F128]
Length = 523
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 22/144 (15%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV 144
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMRKYLS 421
Query: 145 AD------DDIVKLVDTFPGQSID 162
D + IV + + F G ++
Sbjct: 422 LDFAGELANKIVDMTEGFTGADLE 445
>gi|254302208|ref|ZP_04969566.1| AAA family ATPase [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
gi|148322400|gb|EDK87650.1| AAA family ATPase [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
Length = 523
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 22/144 (15%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV 144
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMRKYLS 421
Query: 145 AD------DDIVKLVDTFPGQSID 162
D + IV + + F G ++
Sbjct: 422 LDFAGELANKIVDMTEGFTGADLE 445
>gi|448633745|ref|ZP_21674244.1| cell division control protein 48 [Haloarcula vallismortis ATCC
29715]
gi|445750436|gb|EMA01874.1| cell division control protein 48 [Haloarcula vallismortis ATCC
29715]
Length = 757
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG-RMGGTTQY 62
N I + EL + GE K +R+ + +A ++ + +++D+ AG R GGTT
Sbjct: 527 NFISVKGPELLNKFVGESEKGVREVFSKA----RENAPTVVFFDEIDSIAGERGGGTTDS 582
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
V ++V+ L +L G+ EE V ++ T N + L+R GR+++
Sbjct: 583 GVGERVVSQLL---------TELDGI---EEMENVVVVATTNRPDLIDDALLRPGRLDRH 630
Query: 123 YWAPTRED--RIGVCKGIFRNDNVAD----DDIVKLVDTFPGQSIDFFGALRARVYDDEV 176
P ++ R + + RN +AD D++ + D + G I+ A+
Sbjct: 631 VHVPVPDEDARRAIFQVHTRNKPLADGVDLDELARRTDGYVGADIE---AVAREASMAAT 687
Query: 177 RKWISGVGVGSIGKSLVNSKEAAPTFEQ 204
R++I+ V IG S+ N + FE
Sbjct: 688 REFINSVDPEEIGDSVSNVRVTMDHFEH 715
>gi|320041387|gb|EFW23320.1| ribosome biogenesis ATPase [Coccidioides posadasii str. Silveira]
Length = 762
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 32/231 (13%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA KK C + I+++DA + +
Sbjct: 253 LGVPFIAISAPSIVSGMSGESEKALREHFDEA----KKAAPCLVFIDEIDAITPKR-ESA 307
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L L R GR +
Sbjct: 308 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDPALRRGGRFD 359
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGALRARVYDDEVR 177
K P+ R + + + RN N+A+ D L PG F GA ++
Sbjct: 360 KEINLSVPSEPVREQILRTLTRNMNLANGLDFPLLAKRTPG----FVGA--------DLN 407
Query: 178 KWISGVGVGSIGKSLVNSKEAAPT---FEQPRMTME-KLLEYGNMIVQEQE 224
+S G +I + L + K E+P+ + K+LE +I + +E
Sbjct: 408 DLVSTAGTAAIKRYLDHLKSLGDEEMDIEEPQSNISPKILELRRLIRRARE 458
>gi|303320579|ref|XP_003070289.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240109975|gb|EER28144.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 762
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 32/231 (13%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA KK C + I+++DA + +
Sbjct: 253 LGVPFIAISAPSIVSGMSGESEKALREHFDEA----KKAAPCLVFIDEIDAITPKR-ESA 307
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L L R GR +
Sbjct: 308 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDPALRRGGRFD 359
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGALRARVYDDEVR 177
K P+ R + + + RN N+A+ D L PG F GA ++
Sbjct: 360 KEINLSVPSEPVREQILRTLTRNMNLANGLDFPLLAKRTPG----FVGA--------DLN 407
Query: 178 KWISGVGVGSIGKSLVNSKEAAPT---FEQPRMTME-KLLEYGNMIVQEQE 224
+S G +I + L + K E+P+ + K+LE +I + +E
Sbjct: 408 DLVSTAGTAAIKRYLDHLKSLGDEEMDIEEPQSNISPKILELRRLIRRARE 458
>gi|219669145|ref|YP_002459580.1| microtubule-severing ATPase [Desulfitobacterium hafniense DCB-2]
gi|219539405|gb|ACL21144.1| Microtubule-severing ATPase [Desulfitobacterium hafniense DCB-2]
Length = 493
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 13/144 (9%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM--CCLMINDLDAGAGRMGGTTQYT 63
+ +S E AG A+ +R+ +++A + KK K + I+++D + G +
Sbjct: 127 LAISGSEFVEMYAGVGAERVRKLFKKARESAKKEKKDRAIIFIDEMDILGAKRGSNVSHH 186
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
+Q +N L V++ G+ N E+ ++ +I N L L+R GR ++
Sbjct: 187 EYDQTLNQLL---------VEMDGLGNSEQGTQILLIAATNRAEALDPALLRPGRFDRLV 237
Query: 124 WA--PTREDRIGVCKGIFRNDNVA 145
P +E R+ + K +N +A
Sbjct: 238 KVDLPDKEGRLAILKIHTKNKPLA 261
>gi|308322419|gb|ADO28347.1| 26S protease regulatory subunit s10b [Ictalurus furcatus]
Length = 389
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ V TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREVQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ ++ + IVKL D F G +
Sbjct: 315 IHSGPITKHGDIDYEAIVKLSDGFNGADL 343
>gi|320033057|gb|EFW15006.1| AAA family ATPase [Coccidioides posadasii str. Silveira]
Length = 749
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 21/162 (12%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G+N + + E+ S GE + +R+ +R+A + + + +++DA AGR G +Q
Sbjct: 544 GLNFLAVKGAEILSMYVGESERALREIFRKA----RAARPSIIFFDEIDAIAGRRGPGSQ 599
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
+N V TL+N ++ G+ EE V ++ N TL L+R GR++
Sbjct: 600 SGIN---VLTTLLN--------EMDGI---EELKNVLVVAATNKPETLDPALMRPGRLDN 645
Query: 122 FYWA--PTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ P E R + F V D+ D + L G S
Sbjct: 646 ILYVGLPDMEARKEILDIWFSKSEVHDEVDPIALASRTEGYS 687
>gi|119179544|ref|XP_001241347.1| hypothetical protein CIMG_08510 [Coccidioides immitis RS]
gi|392866735|gb|EAS30090.2| AAA family ATPase [Coccidioides immitis RS]
Length = 749
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 21/162 (12%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G+N + + E+ S GE + +R+ +R+A + + + +++DA AGR G +Q
Sbjct: 544 GLNFLAVKGAEILSMYVGESERALREIFRKA----RAARPSIIFFDEIDAIAGRRGPGSQ 599
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
+N V TL+N D EE V ++ N TL L+R GR++
Sbjct: 600 SGIN---VLTTLLNEMD-----------GIEELKNVLVVAATNKPETLDPALMRPGRLDN 645
Query: 122 FYWA--PTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ P E R + F V D+ D + L G S
Sbjct: 646 ILYVGLPDMEARKEILDIWFSKSEVHDEVDPIALASRTEGYS 687
>gi|119184765|ref|XP_001243250.1| hypothetical protein CIMG_07146 [Coccidioides immitis RS]
Length = 697
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 32/231 (13%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA KK C + I+++DA + +
Sbjct: 232 LGVPFIAISAPSIVSGMSGESEKALREHFDEA----KKAAPCLVFIDEIDAITPKR-ESA 286
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L L R GR +
Sbjct: 287 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDPALRRGGRFD 338
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGALRARVYDDEVR 177
K P+ R + + + RN N+A+ D L PG F GA ++
Sbjct: 339 KEINLSVPSEPVREQILRTLTRNMNLANGLDFPLLAKRTPG----FVGA--------DLN 386
Query: 178 KWISGVGVGSIGKSLVNSKEAAPT---FEQPRMTME-KLLEYGNMIVQEQE 224
+S G +I + L + K E+P+ + K+LE +I + +E
Sbjct: 387 DLVSTAGTAAIKRYLDHLKSLGDEEMDIEEPQSNISPKILELRRLIRRARE 437
>gi|303320901|ref|XP_003070445.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240110141|gb|EER28300.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 749
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 21/162 (12%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G+N + + E+ S GE + +R+ +R+A + + + +++DA AGR G +Q
Sbjct: 544 GLNFLAVKGAEILSMYVGESERALREIFRKA----RAARPSIIFFDEIDAIAGRRGPGSQ 599
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
+N V TL+N ++ G+ EE V ++ N TL L+R GR++
Sbjct: 600 SGIN---VLTTLLN--------EMDGI---EELKNVLVVAATNKPETLDPALMRPGRLDN 645
Query: 122 FYWA--PTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ P E R + F V D+ D + L G S
Sbjct: 646 ILYVGLPDMEARKEILDIWFSKSEVHDEVDPIALASRTEGYS 687
>gi|225715516|gb|ACO13604.1| 26S protease regulatory subunit S10B [Esox lucius]
Length = 389
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ V TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREVQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G E RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---ETLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARMDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHSGPITKHGEMDYEAIVKLSDGFNGADL 343
>gi|340502234|gb|EGR28943.1| vesicular transport protein cdc48, putative [Ichthyophthirius
multifiliis]
Length = 670
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + EL + GE K +RQ + A K C + +++DA + G +
Sbjct: 460 NFISVKGPELLNKYVGESEKSVRQVFSRA----KTSAPCIIFFDEIDALVPKRGSDSTNQ 515
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++VN+ L +L G +++ V +I N + L+R GR++K
Sbjct: 516 VTERVVNSLL---------AELDGFEGRKQ---VFVIAATNRPDIIDPALLRGGRLDKLL 563
Query: 124 WA--PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGA 166
+ P E++I + + + + V DD I F ++ F GA
Sbjct: 564 YVPLPANEEKILILEALLKKTPV-DDSICLRSIAFDKRTEGFSGA 607
>gi|70941981|ref|XP_741212.1| 26S proteasome regulatory subunit 7 [Plasmodium chabaudi chabaudi]
gi|56519448|emb|CAH83988.1| 26S proteasome regulatory subunit 7, putative [Plasmodium chabaudi
chabaudi]
Length = 295
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I + EL GE A+L+R+ ++ A K K C L I+++DA G G + +
Sbjct: 100 ICVIGSELVQKYVGEGARLVRELFQMA----KSKKACILFIDEVDAIGGSRGDESAH--G 153
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--Y 123
+ V T++ I + QL G N+ + +I+ N TL + L+R GR+++ +
Sbjct: 154 DHEVQRTMLEIVN-----QLDGFDNRGN---IKVIMATNRPDTLDSALVRPGRIDRKIEF 205
Query: 124 WAPTREDRIGVCK 136
P E R + K
Sbjct: 206 SLPDLEGRTHIFK 218
>gi|255939672|ref|XP_002560605.1| Pc16g02330 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585228|emb|CAP92903.1| Pc16g02330 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 727
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA K+ C + I+++DA + +
Sbjct: 219 LGVPFISISAPSVVSGMSGESEKALREYFEEA----KRLAPCLIFIDEIDAITPKR-ESA 273
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 274 QREMEKRIVAQLL-------TCMDEIALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 325
Query: 121 KFY--WAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + R +ADD D+ L PG F GA
Sbjct: 326 KEINMTVPSEPVREQILRALTRKMRLADDIDLKTLAKRTPG----FVGA 370
>gi|51467888|ref|NP_001003832.1| 26S protease regulatory subunit S10B [Danio rerio]
gi|49619121|gb|AAT68145.1| 26S protease regulatory subunit S10B [Danio rerio]
gi|54035446|gb|AAH83283.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|94734053|emb|CAK10966.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|156230928|gb|AAI52261.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|161611577|gb|AAI55770.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|182890938|gb|AAI65828.1| Psmc6 protein [Danio rerio]
Length = 389
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ ++ + IVKL D F G +
Sbjct: 315 IHSGPITKHGDIDYEAIVKLSDGFNGADL 343
>gi|238926612|ref|ZP_04658372.1| AAA family ATPase [Selenomonas flueggei ATCC 43531]
gi|238885558|gb|EEQ49196.1| AAA family ATPase [Selenomonas flueggei ATCC 43531]
Length = 523
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 22/144 (15%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
Q+ ++A + C L I++++ G G T V+ +MV L
Sbjct: 316 QQLKDALTTAENVAPCILWIDEIEKGLSGAGSTNDGGVSTRMVGQFLF------------ 363
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV 144
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + + R
Sbjct: 364 --WLQECRKQVFVVATANDVSMLPSELLRRGRFDELFFVDLPTAEERHDILQLYMRKYLG 421
Query: 145 AD------DDIVKLVDTFPGQSID 162
D D +V + D F G ++
Sbjct: 422 LDFAGAFADTLVAMTDGFTGADLE 445
>gi|355745594|gb|EHH50219.1| hypothetical protein EGM_01010, partial [Macaca fascicularis]
Length = 392
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM++ +
Sbjct: 212 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMDLLN 265
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+T N TL L+R GR+++ P + R+ K
Sbjct: 266 -----QMDGF---DTLHRVKMIMTTNRPDTLDLALLRPGRLDRKIHIDLPNEQARLDTLK 317
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 318 IHAGPITKHGEIDYEAIVKLSDGFNGADL 346
>gi|425774370|gb|EKV12678.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Penicillium digitatum PHI26]
gi|425776880|gb|EKV15078.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Penicillium digitatum Pd1]
Length = 729
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA K+ C + I+++DA + +
Sbjct: 220 LGVPFISISAPSVVSGMSGESEKALREYFEEA----KRLAPCLIFIDEIDAITPKR-ESA 274
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 275 QREMEKRIVAQLL-------TCMDEIALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 326
Query: 121 KFY--WAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + R +ADD D+ L PG F GA
Sbjct: 327 KEINMTVPSEPVREQILRALTRKMRLADDIDLKTLAKRTPG----FVGA 371
>gi|297297860|ref|XP_001082028.2| PREDICTED: 26S protease regulatory subunit S10B-like [Macaca
mulatta]
Length = 409
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM++ +
Sbjct: 229 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMDLLN 282
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+T N TL L+R GR+++ P + R+ K
Sbjct: 283 -----QMDGF---DTLHRVKMIMTTNRPDTLDLALLRPGRLDRKIHIDLPNEQARLDTLK 334
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 335 IHAGPITKHGEIDYEAIVKLSDGFNGADL 363
>gi|254167708|ref|ZP_04874558.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
gi|289597057|ref|YP_003483753.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
gi|197623236|gb|EDY35801.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
gi|289534844|gb|ADD09191.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
Length = 394
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 82/205 (40%), Gaps = 43/205 (20%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTV 64
I EL GE AKL+R+ + D+ +K + I+++DA GA R+ T
Sbjct: 201 IRTVGSELVRKYIGEGAKLVRELF----DLARKKAPSIVFIDEIDAIGARRLDMATS--- 253
Query: 65 NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 124
++ V TLM + +L G E V II N L L+R GR ++
Sbjct: 254 GDREVQRTLMQL-----LAELDGF---EPLDNVKIIAATNRPDILDEALLRPGRFDRIIQ 305
Query: 125 AP--TREDRIGVCKGIFRNDNVAD---DDIVKLVDTFPGQSI------------------ 161
P + RI + K R N+ D + I K D F G +
Sbjct: 306 VPYPDYDARIEILKIHTRRMNLKDVNLEKIAKKTDGFSGADLKVICMEAGMFAIRDERDY 365
Query: 162 ----DFFGALRARVYDDEVRKWISG 182
DF A+R ++ D++RK I G
Sbjct: 366 VTQEDFENAIRKFLHADDLRKEIPG 390
>gi|294495131|ref|YP_003541624.1| proteasome-activating nucleotidase [Methanohalophilus mahii DSM
5219]
gi|292666130|gb|ADE35979.1| Proteasome-activating nucleotidase [Methanohalophilus mahii DSM
5219]
Length = 408
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 23/161 (14%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I MS +L GE A+L++ ++ A D C L I+++DA G T T
Sbjct: 216 IRMSGSDLVQKFIGEGARLVKDVFQMARD----KSPCILFIDEIDAVGGM--RTHDGTTG 269
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 125
+ VN T++ + L M E +V II N L L+R GR ++
Sbjct: 270 SAEVNRTMLQL--------LSEMDGFEPRGQVKIIAATNRIDLLDPALLRPGRFDRVIEI 321
Query: 126 P-----TREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
P RED + + R+ N+ADD D+ KL G S
Sbjct: 322 PIPDEKAREDILRIHT---RHMNLADDVDMAKLAKMANGLS 359
>gi|225717030|gb|ACO14361.1| 26S protease regulatory subunit S10B [Esox lucius]
Length = 389
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQGTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHVELPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHSGPITKHGEIDYEAIVKLSDGFNGADL 343
>gi|384251463|gb|EIE24941.1| AAA-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 605
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G+ + +SA E+ +G +GE +RQ ++EAA + C + I+++DA A + T Q
Sbjct: 81 GVPFLRISAPEIVAGVSGESEAKVRQLFQEAASLAP----CIIFIDEIDAIAAKR-ETAQ 135
Query: 62 YTVNNQMVNATLM---NIADNPTCVQLPGMYNKEENPRVP--IIVTG--NDFSTLYAPLI 114
+ ++V L ++++ P G + + R+P ++V G N +L A L
Sbjct: 136 REMERRIVAQMLTCMDDLSEQPLAGGTGGGTERGDPARLPKHVVVIGATNRPDSLDAALR 195
Query: 115 RDGRMEK--FYWAPTREDRIGVCKGIFRNDNV-ADDDIVKLVDTFPGQSIDFFGA 166
R GR ++ P++E R + + + R + D D ++ PG F GA
Sbjct: 196 RAGRFDREIALGIPSQEARAKILQVLARRLRLDGDFDFAQVAVKTPG----FVGA 246
>gi|121702141|ref|XP_001269335.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus clavatus NRRL 1]
gi|119397478|gb|EAW07909.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus clavatus NRRL 1]
Length = 738
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GI I +SA + SG +GE K +R+ + EA K+ C + I+++DA + +
Sbjct: 230 LGIPFIPISAPSIVSGMSGESEKALREHFEEA----KRIAPCLIFIDEIDAITPKR-ESA 284
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 285 QREMEKRIVAQLL-------TCMDDLALDKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 336
Query: 121 KFY--WAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + R +ADD D L PG F GA
Sbjct: 337 KEINMTVPSEPVREQILRALTRKMRLADDLDFKTLAKRTPG----FVGA 381
>gi|448414973|ref|ZP_21577922.1| proteasome-activating nucleotidase [Halosarcina pallida JCM 14848]
gi|445681670|gb|ELZ34100.1| proteasome-activating nucleotidase [Halosarcina pallida JCM 14848]
Length = 409
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I M+ EL GE ++L+R + AAD + + I+++DA A + T T
Sbjct: 214 IKMAGSELVRKFIGEGSRLVRDLFELAAD----REPAVIFIDEIDAVASKR--TDSKTSG 267
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 125
+ V T+M + ++ G ++ E + II N F L ++R GR ++
Sbjct: 268 DAEVQRTMMQL-----LSEMDGFDDRGE---IRIIAATNRFDMLDEAILRPGRFDRLIEV 319
Query: 126 PT--REDRIGVCKGIFRNDNVAD----DDIVKLVDTFPGQSI 161
P E R+ + + R+ NVAD +++ + +D + G I
Sbjct: 320 PNPGPEGRVKILEIHTRDMNVADGVDFEELAEELDGYSGADI 361
>gi|448666749|ref|ZP_21685394.1| cell division control protein 48/AAA family ATPase [Haloarcula
amylolytica JCM 13557]
gi|445771880|gb|EMA22936.1| cell division control protein 48/AAA family ATPase [Haloarcula
amylolytica JCM 13557]
Length = 757
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 26/208 (12%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG-RMGGTTQY 62
N I + EL + GE K +R+ + +A ++ + +++D+ AG R GGTT
Sbjct: 527 NFISVKGPELLNKFVGESEKGVREVFSKA----RENAPTVVFFDEIDSIAGERGGGTTDS 582
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
V ++V+ L +L G+ + E V ++ T N + L+R GR+++
Sbjct: 583 GVGERVVSQLL---------TELDGIEDME---NVVVVATTNRPDLIDDALLRPGRLDRH 630
Query: 123 YWAPT--REDRIGVCKGIFRNDNVAD----DDIVKLVDTFPGQSIDFFGALRARVYDDEV 176
P E R + + R+ +AD DD+ D + G I+ A+
Sbjct: 631 VHVPVPDEEARRAIFQVHTRDKPLADGVDLDDLASRTDGYVGADIE---AVAREASMAAT 687
Query: 177 RKWISGVGVGSIGKSLVNSKEAAPTFEQ 204
R++I+ V IG S+ N + FE
Sbjct: 688 REFINSVDPEDIGDSVSNVRVTMDHFEH 715
>gi|407465786|ref|YP_006776668.1| ATPase AAA [Candidatus Nitrosopumilus sp. AR2]
gi|407048974|gb|AFS83726.1| ATPase AAA [Candidatus Nitrosopumilus sp. AR2]
Length = 710
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 24/165 (14%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + EL S GE K +R+ +R+A ++ C + ++++DA R G +
Sbjct: 511 NFISIKGPELLSKWVGESEKGVREIFRKA----RQAAPCIIFLDEVDALVPRRGSGSDSH 566
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V +V+ L I G+ EE V II N + L+R GR ++
Sbjct: 567 VTENVVSQILTEID---------GL---EELHNVLIIGATNRLDIVDEALLRPGRFDRII 614
Query: 124 WAPTREDR-------IGVCKGIFRNDNVADDDIVKLVDTFPGQSI 161
P +++ I K +D V +IVKL D F G I
Sbjct: 615 KVPNPDEKGRQHIFEIHTKKKPLASD-VKISEIVKLTDDFSGAEI 658
>gi|384245132|gb|EIE18627.1| hypothetical protein COCSUDRAFT_49151 [Coccomyxa subellipsoidea
C-169]
Length = 623
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 269 GCTDPTAENFDPTARSDDGSCQYTL 293
GCTDP+A N+DP A ++DGSC + +
Sbjct: 114 GCTDPSASNYDPNATAEDGSCTFVV 138
>gi|298674960|ref|YP_003726710.1| AAA ATPase [Methanohalobium evestigatum Z-7303]
gi|298287948|gb|ADI73914.1| AAA family ATPase, CDC48 subfamily [Methanohalobium evestigatum
Z-7303]
Length = 733
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + EL S GE + IR+ +R+A K+ + I+++D+ A R G +
Sbjct: 511 NFISIKGPELLSKYVGESERAIRETFRKA----KQAAPTVIFIDEIDSIAPRRGKSNDSN 566
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++V+ L M EE V +I N + L+R GR ++
Sbjct: 567 VTERVVSQILTE------------MDGIEELKDVVVIAATNRLDIVDPALLRPGRFDRMV 614
Query: 124 WA--PTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ P +E R + +AD+ DI KL + G S
Sbjct: 615 YVSIPEKESRKMIFNIHLEGKPLADNVDIEKLANITEGYS 654
>gi|213512535|ref|NP_001134354.1| 26S protease regulatory subunit S10B [Salmo salar]
gi|209732644|gb|ACI67191.1| 26S protease regulatory subunit S10B [Salmo salar]
Length = 389
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 20/167 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
M N + + + + GE A+LIR+ + A D + C + ++++DA GR +
Sbjct: 191 MDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FS 244
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
+ T ++ + TLM + + Q+ G + RV +I+ N TL L+R GR++
Sbjct: 245 EGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLD 296
Query: 121 K--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDTFPGQSI 161
+ P + R+ + K I ++ + + IVKL D F G +
Sbjct: 297 RKIHIELPNEQARLDILKIHSGPITKHGEIDYEAIVKLSDGFNGADL 343
>gi|83315300|ref|XP_730734.1| 26S proteasome subunit P45 [Plasmodium yoelii yoelii 17XNL]
gi|23490548|gb|EAA22299.1| 26S proteasome subunit P45 family, putative [Plasmodium yoelii
yoelii]
Length = 475
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I + EL GE A+L+R+ ++ A K K C L I+++DA G G + +
Sbjct: 255 ICVIGSELVQKYVGEGARLVRELFQMA----KSKKACILFIDEVDAIGGSRGDESAH--G 308
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--Y 123
+ V T++ I + QL G N+ + +I+ N TL + L+R GR+++ +
Sbjct: 309 DHEVQRTMLEIVN-----QLDGFDNRGN---IKVIMATNRPDTLDSALVRPGRIDRKIEF 360
Query: 124 WAPTREDRIGVCK 136
P E R + K
Sbjct: 361 SLPDLEGRTHIFK 373
>gi|70995044|ref|XP_752288.1| AAA family ATPase/60S ribosome export protein Rix7 [Aspergillus
fumigatus Af293]
gi|66849923|gb|EAL90250.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus fumigatus Af293]
gi|159131044|gb|EDP56157.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus fumigatus A1163]
Length = 784
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA K+ C + I+++DA + +
Sbjct: 278 LGVPFIPISAPSIVSGMSGESEKALREHFEEA----KRLAPCLIFIDEIDAITPKR-ESA 332
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 333 QREMEKRIVAQLL-------TCMDDLALDKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 384
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + R +ADD D L PG F GA
Sbjct: 385 KEINMTVPSEPVREQILRALTRKMRLADDLDFKTLAKRTPG----FVGA 429
>gi|229367834|gb|ACQ58897.1| 26S protease regulatory subunit S10B [Anoplopoma fimbria]
Length = 389
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHASPITKHGEIDYEAIVKLSDGFNGADL 343
>gi|342306104|dbj|BAK54193.1| ATPase [Sulfolobus tokodaii str. 7]
Length = 773
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + E+ S GE K IR+ +R+A ++ + +++DA A G TT
Sbjct: 528 GANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAPTVIFFDEIDAIAPMRGLTTD 583
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
V ++VN L ++ G+ K EN V II N L L+R GR ++
Sbjct: 584 SGVTERIVNQLL---------AEMDGI-EKLEN--VVIIAATNRPDILDPALLRPGRFDR 631
Query: 122 FYWAPT--REDRIGVCKGIFRNDNVADD 147
+ P + R + K RN +A+D
Sbjct: 632 LIYVPPPDKRARAEILKVHTRNVPLAED 659
>gi|322388707|ref|ZP_08062305.1| AAA family ATPase [Streptococcus infantis ATCC 700779]
gi|419842778|ref|ZP_14366113.1| ATPase, AAA family [Streptococcus infantis ATCC 700779]
gi|321140457|gb|EFX35964.1| AAA family ATPase [Streptococcus infantis ATCC 700779]
gi|385703513|gb|EIG40628.1| ATPase, AAA family [Streptococcus infantis ATCC 700779]
Length = 525
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 23/145 (15%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAG-AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 85
Q+ ++A + C L I++++ G +G GG V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGATGGANDGGVSTRMVGQFLF----------- 364
Query: 86 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN-- 141
+ +E +V ++ T ND S L + L+R GR ++ ++ PT ++R + F+
Sbjct: 365 ---WMQECKKQVFVVATANDVSMLPSELLRRGRFDELFFVDLPTADERKEILALYFKKYL 421
Query: 142 ----DNVADDDIVKLVDTFPGQSID 162
+ D+I+++ D F G ++
Sbjct: 422 SLEFEGEFADNIIQISDGFTGADLE 446
>gi|198285437|gb|ACH85257.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Salmo
salar]
Length = 387
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 20/167 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
M N + + + + GE A+LIR+ + A D + C + ++++DA GR +
Sbjct: 189 MDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FS 242
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
+ T ++ + TLM + + Q+ G + RV +I+ N TL L+R GR++
Sbjct: 243 EGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLD 294
Query: 121 K--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDTFPGQSI 161
+ P + R+ + K I ++ + + IVKL D F G +
Sbjct: 295 RKIHIELPNEQARLDILKIHSGPITKHGEIDYEAIVKLSDGFNGADL 341
>gi|410928219|ref|XP_003977498.1| PREDICTED: 26S protease regulatory subunit 10B-like isoform 3
[Takifugu rubripes]
Length = 337
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 20/146 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 157 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 210
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 211 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILK 262
Query: 137 ----GIFRNDNVADDDIVKLVDTFPG 158
I ++ + + IVKL D F G
Sbjct: 263 IHSSPITKHGEIDYEAIVKLSDGFNG 288
>gi|15920392|ref|NP_376061.1| hypothetical protein ST0209 [Sulfolobus tokodaii str. 7]
Length = 689
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + E+ S GE K IR+ +R+A ++ + +++DA A G TT
Sbjct: 444 GANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAPTVIFFDEIDAIAPMRGLTTD 499
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
V ++VN L ++ G+ K EN V II N L L+R GR ++
Sbjct: 500 SGVTERIVNQLL---------AEMDGI-EKLEN--VVIIAATNRPDILDPALLRPGRFDR 547
Query: 122 FYWAPT--REDRIGVCKGIFRNDNVADD 147
+ P + R + K RN +A+D
Sbjct: 548 LIYVPPPDKRARAEILKVHTRNVPLAED 575
>gi|148225468|ref|NP_001090469.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
laevis]
gi|67677964|gb|AAH97594.1| MGC114813 protein [Xenopus laevis]
Length = 389
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHAGPITKHGEIDYEAIVKLSDGFNGADL 343
>gi|258577759|ref|XP_002543061.1| ATPase [Uncinocarpus reesii 1704]
gi|237903327|gb|EEP77728.1| ATPase [Uncinocarpus reesii 1704]
Length = 751
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 20/148 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G+N + + E+ S GE + +R+ +R+A + + + +++DA AGR G Q
Sbjct: 544 GLNFLAVKGAEVLSMYVGESERALREIFRKA----RAARPSIIFFDEIDAIAGRRGPGQQ 599
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
VN V TL+N D EE V ++ N TL L+R GR++
Sbjct: 600 SGVN---VLTTLLNEMD-----------GIEELKNVLVVAATNKPDTLDPALMRPGRLDN 645
Query: 122 FYW--APTREDRIGVCKGIFRNDNVADD 147
+ P E R + F +V D+
Sbjct: 646 ILYIGLPDMEARKEILDIWFAKSDVHDE 673
>gi|432945585|ref|XP_004083671.1| PREDICTED: 26S protease regulatory subunit 10B-like [Oryzias
latipes]
Length = 377
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 197 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 250
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 251 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILK 302
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 303 IHSSPITKHGEIDYEAIVKLSDGFNGADL 331
>gi|390342478|ref|XP_785648.3| PREDICTED: nuclear valosin-containing protein [Strongylocentrotus
purpuratus]
Length = 976
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 18/142 (12%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
GIN I + EL + GE + +RQ ++ A + C + ++LDA R +
Sbjct: 716 GINFISVKGPELMNMYVGESERAVRQCFQRA----RNSSPCVIFFDELDALCPRRSDVSD 771
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
+ ++VN L ++ G+ E +V I+ N + ++R GRM+K
Sbjct: 772 SGSSARVVNQLL---------TEMDGL---EARKQVFIMGATNRPDIIDPAVLRPGRMDK 819
Query: 122 FYWA--PTREDRIGVCKGIFRN 141
+ P+ +DRI + + I +N
Sbjct: 820 ILYVGIPSNQDRIAILRTITKN 841
>gi|331265521|ref|YP_004325151.1| ATPase AAA [Streptococcus oralis Uo5]
gi|326682193|emb|CBY99810.1| AAA family ATPase [Streptococcus oralis Uo5]
Length = 525
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 23/145 (15%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAG-AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 85
Q+ ++A + C L I++++ G +G GG V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGATGGANDGGVSTRMVGQFLF----------- 364
Query: 86 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN-- 141
+ +E +V ++ T ND S L + L+R GR ++ ++ PT ++R + F+
Sbjct: 365 ---WMQECKKQVFVVATANDVSMLPSELLRRGRFDELFFVDLPTADERKEILALYFKKYL 421
Query: 142 ----DNVADDDIVKLVDTFPGQSID 162
+ D+I+++ D F G ++
Sbjct: 422 SLEFEGEFADNIIQISDGFTGADLE 446
>gi|28278099|gb|AAH45087.1| Psmc6 protein, partial [Xenopus laevis]
Length = 403
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 223 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 276
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 277 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILK 328
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 329 IHAGPITKHGEIDYEAIVKLSDGFNGADL 357
>gi|348537164|ref|XP_003456065.1| PREDICTED: 26S protease regulatory subunit 10B [Oreochromis
niloticus]
Length = 389
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHSSPITKHGEIDFEAIVKLSDGFNGADL 343
>gi|49258183|gb|AAH73644.1| Psmc6 protein, partial [Xenopus laevis]
Length = 392
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 212 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 265
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 266 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILK 317
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 318 IHAGPITKHGEIDYEAIVKLSDGFNGADL 346
>gi|410928215|ref|XP_003977496.1| PREDICTED: 26S protease regulatory subunit 10B-like isoform 1
[Takifugu rubripes]
Length = 389
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHSSPITKHGEIDYEAIVKLSDGFNGADL 343
>gi|47205942|emb|CAF93631.1| unnamed protein product [Tetraodon nigroviridis]
Length = 389
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHSSPITKHGEIDFEAIVKLSDGFNGADL 343
>gi|45361531|ref|NP_989342.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
(Silurana) tropicalis]
gi|39850228|gb|AAH64227.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
(Silurana) tropicalis]
gi|89266829|emb|CAJ83423.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
(Silurana) tropicalis]
Length = 389
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHAGPITKHGEIDYEAIVKLSDGFNGADL 343
>gi|449664501|ref|XP_002169843.2| PREDICTED: nuclear valosin-containing protein-like [Hydra
magnipapillata]
Length = 400
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 21/157 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
GIN I + EL + GE K +RQ ++ A K C + +++DA R T
Sbjct: 140 GINFISVKGPELLNMYVGESEKAVRQVFQRA----KNSAPCVIFFDEIDALCPRRSETGD 195
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
+ ++++VN L ++ G+ E V I+ N L A ++R GR++K
Sbjct: 196 SSASSRVVNQLL---------TEMDGL---ETRKNVFIMGATNRPDILDAAILRPGRLDK 243
Query: 122 FYWA--PTREDRIGVCKGIFRN---DNVADDDIVKLV 153
+ P DR + I N +ADD ++++
Sbjct: 244 LLYVGLPNPSDRKKILNTITMNGTKPKMADDVTIEVI 280
>gi|256048950|ref|XP_002569488.1| 26S protease regulatory subunit [Schistosoma mansoni]
gi|353231858|emb|CCD79213.1| putative 26s protease regulatory subunit [Schistosoma mansoni]
Length = 431
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 25/162 (15%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLMINDLDA-GAGRMGGTTQ 61
I +S EL GE A+++R+ + RE A I + ++++D+ G+ R+ T
Sbjct: 236 IRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEVDSIGSTRLESGTG 288
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
Q L+N QL G K+ + +I+ N L + L+R GR+++
Sbjct: 289 GDSEVQRTMLELLN--------QLDGFEPKQN---IKVIMATNRIDILDSALLRPGRIDR 337
Query: 122 F--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ AP E R+ + K R N+ D D+ KL ++ PG S
Sbjct: 338 KIEFPAPNEEARLDILKIHSRKMNLTRDIDLRKLAESMPGAS 379
>gi|77993700|gb|ABB13463.1| 26S proteasome subunit RPT6, partial [Schistosoma mansoni]
Length = 382
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 25/162 (15%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLMINDLDA-GAGRMGGTTQ 61
I +S EL GE A+++R+ + RE A I + ++++D+ G+ R+ T
Sbjct: 188 IRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEVDSIGSTRLESGTG 240
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
Q L+N QL G K+ + +I+ N L + L+R GR+++
Sbjct: 241 GDSEVQRTMLELLN--------QLDGFEPKQN---IKVIMATNRIDILDSALLRPGRIDR 289
Query: 122 F--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ AP E R+ + K R N+ D D+ KL ++ PG S
Sbjct: 290 KIEFPAPNEEARLDILKIHSRKMNLTRDIDLRKLAESMPGAS 331
>gi|149622137|ref|XP_001521658.1| PREDICTED: 26S protease regulatory subunit 10B-like, partial
[Ornithorhynchus anatinus]
Length = 400
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 220 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 273
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 274 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 325
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 326 IHAGPITKHGEIDYEAIVKLSDGFNGADL 354
>gi|389623479|ref|XP_003709393.1| hypothetical protein MGG_06686 [Magnaporthe oryzae 70-15]
gi|351648922|gb|EHA56781.1| hypothetical protein MGG_06686 [Magnaporthe oryzae 70-15]
gi|440469561|gb|ELQ38669.1| ribosome biogenesis ATPase RIX7 [Magnaporthe oryzae Y34]
gi|440482858|gb|ELQ63310.1| ribosome biogenesis ATPase RIX7 [Magnaporthe oryzae P131]
Length = 770
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 79/192 (41%), Gaps = 25/192 (13%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
+ +SA L SG +GE K IR+ + EA + C L ++++D AG+M G Q +
Sbjct: 260 VPVSATSLVSGISGESEKNIREAFDEAIRLAP----CLLFLDEVDVVAGKMDG-AQKAME 314
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 125
+M + + C PG R +++ + P +R E
Sbjct: 315 VRMSSEISQGLDKIVRCTS-PG--------RNVVVIAATNRPDSIEPTVRRRFQELEMSM 365
Query: 126 PTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPG-------QSIDFFG--ALRARVYDDE 175
P R + + + RN ++DD D L PG ++DF A+ A VY +
Sbjct: 366 PDEAARESILRTMTRNKRLSDDVDFTALARLTPGYVGADLATAVDFAASEAMMA-VYTAK 424
Query: 176 VRKWISGVGVGS 187
+ + + V GS
Sbjct: 425 ISRLTAAVATGS 436
>gi|34783985|gb|AAH57997.1| Psmc6 protein, partial [Mus musculus]
Length = 382
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 202 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 255
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 256 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 307
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 308 IHAGPITKHGEIDYEAIVKLSDGFNGADL 336
>gi|324506772|gb|ADY42884.1| 26S protease regulatory subunit 10B [Ascaris suum]
Length = 449
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 29/181 (16%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A++IR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 269 GESARMIREMFNYARD----HQPCIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 322
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + +V II+ N TL L+R GR+++ P + R+ V K
Sbjct: 323 -----QMDGF---DSLGKVKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQSRLEVLK 374
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSID---------FFGALRARVYDDEVRKWISGV 183
I ++ + + IVKL D F G + A R V D++ K + V
Sbjct: 375 IHASKITKHGEIDYEAIVKLSDGFSGADLRNVCTEAGLYAIRAEREYVIDEDFMKAVRKV 434
Query: 184 G 184
G
Sbjct: 435 G 435
>gi|355714057|gb|AES04878.1| proteasome 26S ATPase subunit 6 [Mustela putorius furo]
Length = 370
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 190 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 243
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 244 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 295
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 296 IHAGPITKHGEIDYEAIVKLSDGFNGADL 324
>gi|387592229|gb|EIJ87253.1| ATPase [Nematocida parisii ERTm3]
gi|387597428|gb|EIJ95048.1| ATPase [Nematocida parisii ERTm1]
Length = 389
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE +++IR+ + A K+ + C + ++++DA G+ +++ T +++ V TLM + +
Sbjct: 209 GESSRMIREMFTYA----KENQPCVIFLDEIDAIGGKR--SSESTSSDREVQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G EE RV +I+ N L L+R GR+++ PT + R+ + K
Sbjct: 263 -----QMDGF---EELGRVKVIMATNRPDILDPALLRPGRLDRKIEIPLPTSQGRLEILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
+ + ++ + IVK+ F G I
Sbjct: 315 IHSQKMEKKGDIDYNTIVKMSHGFNGADI 343
>gi|58259998|ref|XP_567409.1| ATPase [Cryptococcus neoformans var. neoformans JEC21]
gi|134116132|ref|XP_773237.1| hypothetical protein CNBJ0160 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255859|gb|EAL18590.1| hypothetical protein CNBJ0160 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229459|gb|AAW45892.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21]
Length = 405
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A ++ + C + ++++DA GR +Q T ++ + TLM + +
Sbjct: 225 GESARLIREMFAYA----REHEPCVIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN 278
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV-- 134
Q+ G E R II+ N TL L+R GR+++ P + R+ +
Sbjct: 279 -----QMDGF---ESLGRTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILK 330
Query: 135 --CKGIFRNDNVADDDIVKLVDTFPGQSI 161
K + ++ ++ + IVKL D F G +
Sbjct: 331 IHAKKVNKSGDIDYEAIVKLSDGFNGADL 359
>gi|345795599|ref|XP_003434055.1| PREDICTED: 26S protease regulatory subunit 10B-like [Canis lupus
familiaris]
Length = 418
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 238 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 291
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 292 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 343
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 344 IHAGPITKHGEIDYEAIVKLSDGFNGADL 372
>gi|81294202|gb|AAI07951.1| Psmc6 protein [Rattus norvegicus]
Length = 381
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 201 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 254
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 255 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 306
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 307 IHAGPITKHGEIDYEAIVKLSDGFNGADL 335
>gi|195539395|ref|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapiens]
gi|73963837|ref|XP_535701.2| PREDICTED: 26S protease regulatory subunit 10B [Canis lupus
familiaris]
gi|114653051|ref|XP_001159476.1| PREDICTED: 26S protease regulatory subunit 10B isoform 2 [Pan
troglodytes]
gi|291403875|ref|XP_002718294.1| PREDICTED: proteasome 26S ATPase subunit 6 [Oryctolagus cuniculus]
gi|296215034|ref|XP_002753956.1| PREDICTED: 26S protease regulatory subunit 10B [Callithrix jacchus]
gi|297695107|ref|XP_002824794.1| PREDICTED: 26S protease regulatory subunit 10B [Pongo abelii]
gi|332237110|ref|XP_003267746.1| PREDICTED: 26S protease regulatory subunit 10B [Nomascus
leucogenys]
gi|344273723|ref|XP_003408668.1| PREDICTED: 26S protease regulatory subunit 10B-like [Loxodonta
africana]
gi|348572189|ref|XP_003471876.1| PREDICTED: 26S protease regulatory subunit 10B-like [Cavia
porcellus]
gi|397523475|ref|XP_003831757.1| PREDICTED: 26S protease regulatory subunit 10B [Pan paniscus]
gi|410962256|ref|XP_003987690.1| PREDICTED: 26S protease regulatory subunit 10B [Felis catus]
gi|426232518|ref|XP_004010269.1| PREDICTED: 26S protease regulatory subunit 10B [Ovis aries]
gi|426376918|ref|XP_004055227.1| PREDICTED: 26S protease regulatory subunit 10B-like [Gorilla
gorilla gorilla]
gi|351707287|gb|EHB10206.1| 26S protease regulatory subunit S10B [Heterocephalus glaber]
gi|380814880|gb|AFE79314.1| 26S protease regulatory subunit 10B [Macaca mulatta]
gi|410216102|gb|JAA05270.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Pan
troglodytes]
gi|410290648|gb|JAA23924.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Pan
troglodytes]
gi|417400316|gb|JAA47112.1| Putative 26s protease regulatory subunit s10b-like protein
[Desmodus rotundus]
gi|431895846|gb|ELK05264.1| 26S protease regulatory subunit S10B [Pteropus alecto]
Length = 403
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 223 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 276
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 277 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 328
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 329 IHAGPITKHGEIDYEAIVKLSDGFNGADL 357
>gi|358342186|dbj|GAA49709.1| 26S proteasome regulatory subunit T6, partial [Clonorchis sinensis]
Length = 666
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 25/162 (15%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLMINDLDA-GAGRMGGTTQ 61
I +S EL GE A+++R+ + RE A I + ++++D+ G+ R+ ++
Sbjct: 232 IRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEVDSIGSTRVESSSG 284
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
Q L+N QL G K+ + +I+ N L + L+R GR+++
Sbjct: 285 GDSEVQRTMLELLN--------QLDGFEPKQN---IKVIMATNRIDILDSALLRPGRIDR 333
Query: 122 F--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ AP E R+ + K R N+ D D+ KL ++ PG S
Sbjct: 334 KIEFPAPNEEARLDILKIHSRKMNLTRDIDLRKLAESMPGAS 375
>gi|114053003|ref|NP_001039705.1| 26S protease regulatory subunit 10B [Bos taurus]
gi|119390895|sp|Q2KIW6.1|PRS10_BOVIN RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6
gi|86827363|gb|AAI12483.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Bos taurus]
Length = 389
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHAGPITKHGEIDYEAIVKLSDGFNGADL 343
>gi|395838570|ref|XP_003792186.1| PREDICTED: 26S protease regulatory subunit 10B [Otolemur garnettii]
Length = 403
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 223 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 276
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 277 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 328
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 329 IHAGPITKHGEIDYEAIVKLSDGFNGADL 357
>gi|403278020|ref|XP_003930633.1| PREDICTED: 26S protease regulatory subunit 10B [Saimiri boliviensis
boliviensis]
Length = 428
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 223 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 276
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 277 -----QMDGFDTLH---RVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 328
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 329 IHAGPITKHGEIDYEAIVKLSDGFNGADL 357
>gi|213404048|ref|XP_002172796.1| 19S proteasome regulatory subunit Rpt5 [Schizosaccharomyces
japonicus yFS275]
gi|212000843|gb|EEB06503.1| 19S proteasome regulatory subunit Rpt5 [Schizosaccharomyces
japonicus yFS275]
Length = 439
Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 18/145 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTV 64
+ ++A +L G+ AKL+R +A + K+ + I++LDA G R
Sbjct: 249 LKLAAPQLVQMFIGDGAKLVR----DAFALAKEKSPAIIFIDELDAIGTKRFDSEK---A 301
Query: 65 NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF-- 122
++ V T++ + + QL G + + RV +I N TL L+R GR+++
Sbjct: 302 GDREVQRTMLELLN-----QLDGFSS---DDRVKVIAATNRVDTLDPALLRSGRLDRKLE 353
Query: 123 YWAPTREDRIGVCKGIFRNDNVADD 147
+ P E R+G+ + R VADD
Sbjct: 354 FPLPNEEARVGILRIHSRKMTVADD 378
>gi|221060877|ref|XP_002262008.1| 26S proteasome regulatory subunit 7 [Plasmodium knowlesi strain H]
gi|193811158|emb|CAQ41886.1| 26S proteasome regulatory subunit 7, putative [Plasmodium knowlesi
strain H]
Length = 441
Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I + EL GE A+++R+ ++ A K K C L I+++DA G G + +
Sbjct: 225 ICVIGSELVQKYVGEGARMVRELFQMA----KSKKACILFIDEVDAIGGSRGDESAH--G 278
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--Y 123
+ V T++ I + QL G N+ + +++ N TL + L+R GR+++ +
Sbjct: 279 DHEVQRTMLEIVN-----QLDGFDNRGN---IKVLMATNRPDTLDSALVRPGRIDRKIEF 330
Query: 124 WAPTREDRIGVCK 136
P E R + K
Sbjct: 331 SLPDLEGRTHIFK 343
>gi|449278480|gb|EMC86302.1| 26S protease regulatory subunit S10B, partial [Columba livia]
Length = 361
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 181 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 234
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 235 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 286
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 287 IHAGPITKHGEIDYEAIVKLSDGFNGADL 315
>gi|378755356|gb|EHY65383.1| 26S protease regulatory subunit S10B [Nematocida sp. 1 ERTm2]
Length = 389
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE +++IR+ + A K+ + C + ++++DA G+ +++ T +++ V TLM + +
Sbjct: 209 GESSRMIREMFTYA----KENQPCVIFLDEIDAIGGKR--SSESTSSDREVQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK 136
Q+ G EE RV +I+ N L L+R GR+++ PT + R+ + K
Sbjct: 263 -----QMDGF---EELGRVKVIMATNRPDILDPALLRPGRLDRKIEIPLPTSQGRLEILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
+ + ++ + IVK+ F G I
Sbjct: 315 IHSAKMEKKGDIDYNTIVKMSHGFNGADI 343
>gi|395504310|ref|XP_003756498.1| PREDICTED: 26S protease regulatory subunit 10B [Sarcophilus
harrisii]
Length = 387
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 207 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 260
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 261 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 312
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 313 IHAGPITKHGEIDYEAIVKLSDGFNGADL 341
>gi|355563435|gb|EHH19997.1| hypothetical protein EGK_02756, partial [Macaca mulatta]
Length = 319
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 140 GESARLIREMFNYARD----RQPCLIFMDEIDAIGGRR--FSEGTSADREIRRTLMELLN 193
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G RV +I+ N TL L+R GR+++ +P + R+ + K
Sbjct: 194 -----QMDGFGTLH---RVKMIMATNRPDTLDPALLRPGRLDRKTHIDSPNEQARLDILK 245
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 246 IHAGPITKHGEIDYEAIVKLSDGFNGADL 274
>gi|326921318|ref|XP_003206908.1| PREDICTED: 26S protease regulatory subunit 10B-like [Meleagris
gallopavo]
Length = 372
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 192 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 245
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 246 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 297
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 298 IHAGPITKHGEIDYEAIVKLSDGFNGADL 326
>gi|213972598|ref|NP_001093979.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Rattus
norvegicus]
gi|149033503|gb|EDL88301.1| rCG61291 [Rattus norvegicus]
Length = 403
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 223 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 276
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 277 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 328
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 329 IHAGPITKHGEIDYEAIVKLSDGFNGADL 357
>gi|327286230|ref|XP_003227834.1| PREDICTED: 26S protease regulatory subunit 10B-like, partial
[Anolis carolinensis]
Length = 382
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 202 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 255
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 256 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 307
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 308 IHAGPITKHGEIDYEAIVKLSDGFNGADL 336
>gi|30583901|gb|AAP36199.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, ATPase, 6
[synthetic construct]
gi|60653563|gb|AAX29475.1| proteasome 26S subunit 6 [synthetic construct]
Length = 390
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHAGPITKHGEIDYEAIVKLSDGFNGADL 343
>gi|448688419|ref|ZP_21694252.1| cell division control protein 48 [Haloarcula japonica DSM 6131]
gi|445779480|gb|EMA30410.1| cell division control protein 48 [Haloarcula japonica DSM 6131]
Length = 757
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 32/226 (14%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG-RMGGTTQY 62
N I + EL + GE K +R+ + +A ++ + +++D+ AG R GGTT
Sbjct: 527 NFISVKGPELLNKFVGESEKGVREVFSKA----RENAPTVVFFDEIDSIAGERGGGTTDS 582
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
V ++V+ L +L G+ EE V ++ T N + L+R GR+++
Sbjct: 583 GVGERVVSQLL---------TELDGI---EEMENVVVVATTNRPDLIDDALLRPGRLDRH 630
Query: 123 YWAPT--REDRIGVCKGIFRNDNVAD----DDIVKLVDTFPGQSIDFFGALRARVYDDEV 176
P E R + + R+ +AD D++ D + G I+ A+
Sbjct: 631 VHVPVPDEEARRAIFQVHTRSKPLADGVDLDELASRTDGYVGADIE---AVAREASMAAT 687
Query: 177 RKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQE 222
R++I+ V IG S+ N + FE L E G + +E
Sbjct: 688 REFINSVDPEEIGDSVSNVRVTMDHFEH------ALSEVGPSVTEE 727
>gi|27754103|ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus]
gi|354497334|ref|XP_003510776.1| PREDICTED: 26S protease regulatory subunit 10B [Cricetulus griseus]
gi|51702772|sp|P62333.1|PRS10_HUMAN RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6; AltName:
Full=Proteasome subunit p42
gi|55977306|sp|P62334.1|PRS10_MOUSE RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6; AltName:
Full=Proteasome subunit p42
gi|59800155|sp|P62335.1|PRS10_SPETR RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Conserved ATPase domain protein 44; Short=CADp44;
AltName: Full=Proteasome 26S subunit ATPase 6; AltName:
Full=Proteasome subunit p42
gi|1045497|gb|AAB40354.1| conserved ATPase domain protein 44 [Spermophilus tridecemlineatus]
gi|2213932|gb|AAB61616.1| 26S proteasome regulatory subunit [Homo sapiens]
gi|12848757|dbj|BAB28078.1| unnamed protein product [Mus musculus]
gi|13529266|gb|AAH05390.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
sapiens]
gi|30582525|gb|AAP35489.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
sapiens]
gi|48145535|emb|CAG32990.1| PSMC6 [Homo sapiens]
gi|61361236|gb|AAX42017.1| proteasome 26S subunit 6 [synthetic construct]
gi|61361244|gb|AAX42018.1| proteasome 26S subunit 6 [synthetic construct]
gi|74185083|dbj|BAE39144.1| unnamed protein product [Mus musculus]
gi|74194908|dbj|BAE26034.1| unnamed protein product [Mus musculus]
gi|109733764|gb|AAI16753.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus
musculus]
gi|111601154|gb|AAI19169.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus
musculus]
gi|119586049|gb|EAW65645.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
sapiens]
gi|123994057|gb|ABM84630.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic
construct]
gi|148688745|gb|EDL20692.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6, isoform
CRA_b [Mus musculus]
gi|189053915|dbj|BAG36422.1| unnamed protein product [Homo sapiens]
gi|208967156|dbj|BAG73592.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic
construct]
gi|296483635|tpg|DAA25750.1| TPA: 26S protease regulatory subunit S10B [Bos taurus]
gi|335775939|gb|AEH58739.1| 26S protease regulatory subunit S10B-like protein [Equus caballus]
Length = 389
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHAGPITKHGEIDYEAIVKLSDGFNGADL 343
>gi|57529874|ref|NP_001006494.1| 26S protease regulatory subunit S10B [Gallus gallus]
gi|53130584|emb|CAG31621.1| hypothetical protein RCJMB04_8n6 [Gallus gallus]
Length = 389
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHAGPITKHGEIDYEAIVKLSDGFNGADL 343
>gi|389586053|dbj|GAB68782.1| 26S proteasome ATPase subunit [Plasmodium cynomolgi strain B]
Length = 420
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I + EL GE A+++R+ ++ A K K C L I+++DA G G + +
Sbjct: 225 ICVIGSELVQKYVGEGARMVRELFQMA----KSKKACILFIDEVDAIGGSRGDESAH--G 278
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--Y 123
+ V T++ I + QL G N+ + +++ N TL + L+R GR+++ +
Sbjct: 279 DHEVQRTMLEIVN-----QLDGFDNRGN---IKVLMATNRPDTLDSALVRPGRIDRKIEF 330
Query: 124 WAPTREDRIGVCK 136
P E R + K
Sbjct: 331 SLPDLEGRTHIFK 343
>gi|335280279|ref|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa]
Length = 403
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 223 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 276
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 277 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 328
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 329 IHAGPITKHGEIDYEAIVKLSDGFNGADL 357
>gi|334310858|ref|XP_001365047.2| PREDICTED: 26S protease regulatory subunit 10B-like [Monodelphis
domestica]
Length = 403
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 223 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 276
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 277 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 328
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 329 IHAGPITKHGEIDYEAIVKLSDGFNGADL 357
>gi|296005359|ref|XP_001349843.2| 26S proteasome regulatory subunit 7, putative [Plasmodium
falciparum 3D7]
gi|225631944|emb|CAD52250.2| 26S proteasome regulatory subunit 7, putative [Plasmodium
falciparum 3D7]
Length = 420
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I + EL GE A+++R+ ++ A K K C L I+++DA G G + +
Sbjct: 225 ICVIGSELVQKYVGEGARMVRELFQMA----KSKKACILFIDEVDAIGGSRGDESAH--G 278
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--Y 123
+ V T++ I + QL G N+ + +++ N TL + L+R GR+++ +
Sbjct: 279 DHEVQRTMLEIVN-----QLDGFDNRGN---IKVLMATNRPDTLDSALVRPGRIDRRIEF 330
Query: 124 WAPTREDRIGVCK 136
P E R + K
Sbjct: 331 SLPDLEGRTHIFK 343
>gi|156102703|ref|XP_001617044.1| 26S proteasome ATPase subunit [Plasmodium vivax Sal-1]
gi|148805918|gb|EDL47317.1| 26S proteasome ATPase subunit, putative [Plasmodium vivax]
Length = 420
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I + EL GE A+++R+ ++ A K K C L I+++DA G G + +
Sbjct: 225 ICVIGSELVQKYVGEGARMVRELFQMA----KSKKACILFIDEVDAIGGSRGDESAH--G 278
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--Y 123
+ V T++ I + QL G N+ + +++ N TL + L+R GR+++ +
Sbjct: 279 DHEVQRTMLEIVN-----QLDGFDNRGN---IKVLMATNRPDTLDSALVRPGRIDRKIEF 330
Query: 124 WAPTREDRIGVCK 136
P E R + K
Sbjct: 331 SLPDLEGRTHIFK 343
>gi|115402109|ref|XP_001217131.1| ribosome biogenesis ATPase RIX7 [Aspergillus terreus NIH2624]
gi|114188977|gb|EAU30677.1| ribosome biogenesis ATPase RIX7 [Aspergillus terreus NIH2624]
Length = 514
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA K+ C + I+++DA + +
Sbjct: 168 LGVPFISISAPSIVSGMSGESEKALREHFEEA----KRLAPCLIFIDEIDAITPKR-ESA 222
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 223 QREMEKRIVAQLL-------TCMDDLALDKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 274
Query: 121 KFY--WAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + R +ADD D L PG F GA
Sbjct: 275 KEINMTVPSEPVREKILRALTRKMVLADDLDFKTLAKRTPG----FVGA 319
>gi|449504593|ref|XP_002200452.2| PREDICTED: 26S protease regulatory subunit 10B [Taeniopygia
guttata]
Length = 391
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 211 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 264
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 265 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 316
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 317 IHAGPITKHGEIDYEAIVKLSDGFNGADL 345
>gi|119496141|ref|XP_001264844.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Neosartorya fischeri NRRL 181]
gi|119413006|gb|EAW22947.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Neosartorya fischeri NRRL 181]
Length = 736
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA ++ C + I+++DA + +
Sbjct: 230 LGVPFIPISAPSIVSGMSGESEKALREHFEEA----RRLAPCLIFIDEIDAITPKR-ESA 284
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 285 QREMEKRIVAQLL-------TCMDDLALDKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 336
Query: 121 KFY--WAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + R +ADD D L PG F GA
Sbjct: 337 KEINMTVPSEPVREQILRALTRKMRLADDLDFKTLAKRTPG----FVGA 381
>gi|448639878|ref|ZP_21677026.1| cell division control protein 48/AAA family ATPase [Haloarcula
sinaiiensis ATCC 33800]
gi|445762405|gb|EMA13626.1| cell division control protein 48/AAA family ATPase [Haloarcula
sinaiiensis ATCC 33800]
Length = 757
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 26/208 (12%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG-RMGGTTQY 62
N I + EL + GE K +R+ + +A ++ + +++D+ AG R GGTT
Sbjct: 527 NFISVKGPELLNKFVGESEKGVREVFSKA----RENAPTVVFFDEIDSIAGERGGGTTDS 582
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
V ++V+ L +L G+ + E V ++ T N + L+R GR+++
Sbjct: 583 GVGERVVSQLL---------TELDGIEDME---NVVVVATTNRPDLIDDALLRPGRLDRH 630
Query: 123 YWAPT--REDRIGVCKGIFRNDNVAD----DDIVKLVDTFPGQSIDFFGALRARVYDDEV 176
P E R + + R+ +AD D++ D + G I+ A+
Sbjct: 631 VHVPVPDEEARHAIFQVHTRDKPLADGVDLDELASRTDGYVGADIE---AVAREASMAAT 687
Query: 177 RKWISGVGVGSIGKSLVNSKEAAPTFEQ 204
R++I+ V IG S+ N + FE
Sbjct: 688 REFINSVDPEEIGDSVSNVRVTMDHFEH 715
>gi|355572388|ref|ZP_09043532.1| Proteasome-activating nucleotidase [Methanolinea tarda NOBI-1]
gi|354824762|gb|EHF09004.1| Proteasome-activating nucleotidase [Methanolinea tarda NOBI-1]
Length = 412
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 11 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMV 69
EL GE A+L+R+ + D+ KK + I+++DA GA R TT ++ V
Sbjct: 221 SELVQKYIGEGARLVRELF----DLAKKKAPTIIFIDEIDAVGASRTESTTS---GDREV 273
Query: 70 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 129
TLM + L GM E V II N L L+R GR ++ P +
Sbjct: 274 QRTLMQL--------LAGMDGFERRGDVKIIGATNRIDILDRALLRPGRFDRIIEIPLPD 325
Query: 130 --DRIGVCKGIFR----NDNVADDDIVKLVD 154
R+ + K R ++NV ++I +L +
Sbjct: 326 ILGRVAILKVHTRKMNLDENVDLEEIARLTE 356
>gi|119773293|ref|YP_926033.1| serine protease [Shewanella amazonensis SB2B]
gi|119765793|gb|ABL98363.1| serine protease, subtilase family [Shewanella amazonensis SB2B]
Length = 1638
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 266 VPEGCTDPTAENFDPTARSDDGSCQY 291
V +GCTD A NFDP A DDGSC++
Sbjct: 1573 VEKGCTDSGATNFDPNANQDDGSCKF 1598
>gi|288930616|ref|YP_003434676.1| ATPase AAA, CDC48 subfamily [Ferroglobus placidus DSM 10642]
gi|288892864|gb|ADC64401.1| AAA family ATPase, CDC48 subfamily [Ferroglobus placidus DSM 10642]
Length = 791
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 22/165 (13%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + EL S GE K +R+ +R+A + C L +++D+ A R G
Sbjct: 574 NFISVKGPELLSKWVGESEKHVREMFRKARQVAP----CVLFFDEIDSLAPRRGTGGDTH 629
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++V+ L +L G+ EE V +I N + L+R GR+E+
Sbjct: 630 VTERVVSQLL---------TELDGL---EELKDVVVIAATNRPDMIDPALLRPGRLERHI 677
Query: 124 WAPTREDRIGV------CKGIFRNDNVADDDIVKLVDTFPGQSID 162
+ P +++ + +G+ +++V +++ K + + G I+
Sbjct: 678 YIPPPDEKARLEIFKIHTRGMPLDEDVNLEELAKKTEGYSGADIE 722
>gi|350629383|gb|EHA17756.1| hypothetical protein ASPNIDRAFT_55895 [Aspergillus niger ATCC 1015]
Length = 736
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA K+ C + I+++DA + +
Sbjct: 227 LGVPFISISAPSVISGMSGESEKALREYFEEA----KRIAPCLIFIDEIDAITPKR-ESA 281
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 282 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 333
Query: 121 KFY--WAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + R +ADD D L PG F GA
Sbjct: 334 KEINMTVPSEPVREQILRALTRKMRLADDLDFKTLAKRTPG----FVGA 378
>gi|15897351|ref|NP_341956.1| AAA ATPase [Sulfolobus solfataricus P2]
gi|13813572|gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus P2]
Length = 769
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 28/184 (15%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + E+ S GE K +R+ +R A ++ C + +++D+ A G T
Sbjct: 535 GANFIAVRGPEILSKWVGESEKAVREIFRRA----RQTAPCVIFFDEIDSIAPMRGFTHD 590
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
V ++VN L M + RV +I N L L+R GR ++
Sbjct: 591 SGVTERIVNQLLSE------------MDGIQSLNRVVVIAATNRPDILDPALLRPGRFDR 638
Query: 122 FYWAPTRED--RIGVCKGIFR----NDNVADDDIVKLVDTFPGQSIDFFG------ALRA 169
+ P ++ RI + K R + +V +++ K ++ + G I+ LR
Sbjct: 639 LIYVPPPDEKARIEILKIYTRTLPIDSSVNLEELAKKLEGYTGADIEALARETTMKVLRQ 698
Query: 170 RVYD 173
+ YD
Sbjct: 699 KYYD 702
>gi|145239089|ref|XP_001392191.1| hypothetical protein ANI_1_94074 [Aspergillus niger CBS 513.88]
gi|134076694|emb|CAK45225.1| unnamed protein product [Aspergillus niger]
Length = 736
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA K+ C + I+++DA + +
Sbjct: 227 LGVPFISISAPSVISGMSGESEKALREYFEEA----KRIAPCLIFIDEIDAITPKR-ESA 281
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 282 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 333
Query: 121 KFY--WAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + R +ADD D L PG F GA
Sbjct: 334 KEINMTVPSEPVREQILRALTRKMRLADDLDFKTLAKRTPG----FVGA 378
>gi|12852148|dbj|BAB29293.1| unnamed protein product [Mus musculus]
Length = 389
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + + ++ + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMF----NYVRDHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNSPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHAGPITKHGEIDYEAIVKLSDGFNGADL 343
>gi|402876178|ref|XP_003901853.1| PREDICTED: 26S protease regulatory subunit 10B [Papio anubis]
Length = 378
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 198 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 251
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 252 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 303
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 304 IHAGPITKHGEIDYEAIVKLSDGFNGADL 332
>gi|284173309|ref|ZP_06387278.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2]
gi|384433872|ref|YP_005643230.1| AAA ATPase [Sulfolobus solfataricus 98/2]
gi|261602026|gb|ACX91629.1| AAA family ATPase, CDC48 subfamily [Sulfolobus solfataricus 98/2]
Length = 759
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 28/184 (15%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + E+ S GE K +R+ +R A ++ C + +++D+ A G T
Sbjct: 525 GANFIAVRGPEILSKWVGESEKAVREIFRRA----RQTAPCVIFFDEIDSIAPMRGFTHD 580
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
V ++VN L M + RV +I N L L+R GR ++
Sbjct: 581 SGVTERIVNQLLSE------------MDGIQSLNRVVVIAATNRPDILDPALLRPGRFDR 628
Query: 122 FYWAPTRED--RIGVCKGIFR----NDNVADDDIVKLVDTFPGQSIDFFG------ALRA 169
+ P ++ RI + K R + +V +++ K ++ + G I+ LR
Sbjct: 629 LIYVPPPDEKARIEILKIYTRTLPIDSSVNLEELAKKLEGYTGADIEALARETTMKVLRQ 688
Query: 170 RVYD 173
+ YD
Sbjct: 689 KYYD 692
>gi|390954266|ref|YP_006418024.1| hypothetical protein Aeqsu_1520 [Aequorivita sublithincola DSM
14238]
gi|390420252|gb|AFL81009.1| hypothetical protein Aeqsu_1520 [Aequorivita sublithincola DSM
14238]
Length = 304
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 264 VPVPEGCTDPTAENFDPTARSDDGSCQY 291
+ V GCTDP + N++P A +DDGSC Y
Sbjct: 50 IAVILGCTDPASSNYNPDANTDDGSCVY 77
>gi|448659284|ref|ZP_21683252.1| cell division control protein 48 [Haloarcula californiae ATCC
33799]
gi|445760786|gb|EMA12043.1| cell division control protein 48 [Haloarcula californiae ATCC
33799]
Length = 757
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 26/208 (12%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG-RMGGTTQY 62
N I + EL + GE K +R+ + +A ++ + +++D+ AG R GGTT
Sbjct: 527 NFISVKGPELLNKFVGESEKGVREVFSKA----RENAPTVVFFDEIDSIAGERGGGTTDS 582
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
V ++V+ L +L G+ + E V ++ T N + L+R GR+++
Sbjct: 583 GVGERVVSQLL---------TELDGIEDME---NVVVVATTNRPDLIDDALLRPGRLDRH 630
Query: 123 YWAPTRED--RIGVCKGIFRNDNVAD----DDIVKLVDTFPGQSIDFFGALRARVYDDEV 176
P ++ R + R+ +AD DD+ D + G I+ A+
Sbjct: 631 VHVPVPDEDARRAIFHVHTRDKPLADGVDLDDLASRTDGYVGADIE---AVAREASMAAT 687
Query: 177 RKWISGVGVGSIGKSLVNSKEAAPTFEQ 204
R++I+ V IG S+ N + FE
Sbjct: 688 REFINSVDPEDIGDSVSNVRVTMDHFEH 715
>gi|425899584|ref|ZP_18876175.1| ATPase, AAA family [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397890300|gb|EJL06782.1| ATPase, AAA family [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
Length = 853
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 30/169 (17%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G + + + G L+ GE + IR R I+ C L I+++D G G+ +
Sbjct: 501 GFSLVRLDMGALQDKWLGESERNIRSALR----IVDAMSPCILWIDEIDKGLGQ-----E 551
Query: 62 YTVN-NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
+T + Q VNATL+ + +E ++ T N F L L R GR +
Sbjct: 552 HTHSAAQNVNATLLT-------------WLQESRAPAFVVATANRFGGLPPELTRAGRFD 598
Query: 121 K--FYWAPTREDRIGVCKGIF--RNDNVAD---DDIVKLVDTFPGQSID 162
F+ P E R+ + + RN +++ D ++ L + F G ++
Sbjct: 599 GRFFFGCPGSEGRLEILRIHLAARNCELSEAPLDTVISLTEGFTGAELE 647
>gi|403225149|gb|AFR24761.1| ATPase AAA family [uncultured Pelagomonas]
Length = 493
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 28/168 (16%)
Query: 5 PIM-MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
P++ + G L +G GE +R+ R A + C + I+++D + G
Sbjct: 286 PLLRLDFGRLFAGIVGESESRVREMIRVAEAL----SPCIVWIDEIDKSFNQSEGKGDSG 341
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
N+++ AT + + E+ +V ++ T N+F L LIR GR ++ +
Sbjct: 342 TTNRVL-ATFLT-------------WLSEKTSQVFVVATANNFEVLPLELIRKGRFDEIF 387
Query: 124 WA--PTREDR---IGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGA 166
+ P +R V R D+V + D+ + ++IDF GA
Sbjct: 388 FVGLPVESERKQIFEVLLSQLRPDSVQNYDL----QSLSKKAIDFSGA 431
>gi|328909565|gb|AEB61450.1| 26S protease regulatory subunit 10B-like protein, partial [Equus
caballus]
Length = 182
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 2 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 55
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 56 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 107
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 108 IHAGPITKHGEIDYEAIVKLSDGFNGADL 136
>gi|259488300|tpe|CBF87639.1| TPA: AAA family ATPase/60S ribosome export protein Rix7, putative
(AFU_orthologue; AFUA_1G09210) [Aspergillus nidulans
FGSC A4]
Length = 729
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA K+ C + I+++DA + +
Sbjct: 223 LGVPFISISAPSIVSGMSGESEKALREHFEEA----KRLAPCLIFIDEIDAITPKREN-S 277
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 278 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 329
Query: 121 KFY--WAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + R + DD D L PG F GA
Sbjct: 330 KEINMTVPSEPVREQILRALTRKMRLVDDLDFKTLAKRTPG----FVGA 374
>gi|67521818|ref|XP_658970.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
gi|40746393|gb|EAA65549.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
Length = 628
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 20/169 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA K+ C + I+++DA + +
Sbjct: 122 LGVPFISISAPSIVSGMSGESEKALREHFEEA----KRLAPCLIFIDEIDAITPKREN-S 176
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 177 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 228
Query: 121 KFY--WAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K P+ R + + + R + DD D L PG F GA
Sbjct: 229 KEINMTVPSEPVREQILRALTRKMRLVDDLDFKTLAKRTPG----FVGA 273
>gi|148688744|gb|EDL20691.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6, isoform
CRA_a [Mus musculus]
Length = 212
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 33 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 86
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 87 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 138
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 139 IHAGPITKHGEIDYEAIVKLSDGFNGADL 167
>gi|19263883|gb|AAH25134.1| Psmc6 protein, partial [Mus musculus]
Length = 293
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 113 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 166
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 167 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 218
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 219 IHAGPITKHGEIDYEAIVKLSDGFNGADL 247
>gi|340345795|ref|ZP_08668927.1| AAA family ATPase, CDC48 subfamily [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520936|gb|EGP94659.1| AAA family ATPase, CDC48 subfamily [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 714
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 28/187 (14%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG-GTTQY 62
N I + EL S GE K +R+ +R+A ++ C + ++++DA R G G +
Sbjct: 513 NFISIKGPELLSKWVGESEKGVREIFRKA----RQAAPCIIFLDEVDALVPRRGSGDSSS 568
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
V +V+ L I G+ EE V II N + L+R GR ++
Sbjct: 569 HVTENVVSQILTEID---------GL---EELHNVLIIGATNRLDIIDEALLRPGRFDRI 616
Query: 123 YWAPTREDR-------IGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDE 175
PT + + I K +D V+ +V+L D F G I A+ R
Sbjct: 617 IEVPTPDSKGRQHIFEIHTKKKPLASD-VSIAKLVELTDGFSGAEI---AAVANRAAITA 672
Query: 176 VRKWISG 182
+++++SG
Sbjct: 673 LKRYVSG 679
>gi|114052605|ref|NP_001040484.1| 26S proteasome regulatory ATPase subunit 10B [Bombyx mori]
gi|95103080|gb|ABF51481.1| 26S proteasome regulatory ATPase subunit 10B [Bombyx mori]
Length = 396
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 216 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 269
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + +V II+ N TL L+R GR+++ P + R+ + K
Sbjct: 270 -----QMDGF---DSLGQVKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILK 321
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + +VKL DTF G +
Sbjct: 322 IHASPIAKHGEMDYEAVVKLSDTFNGADL 350
>gi|389610171|dbj|BAM18697.1| 26S protease regulatory subunit rpt4 [Papilio xuthus]
Length = 396
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 216 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 269
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + +V II+ N TL L+R GR+++ P + R+ + K
Sbjct: 270 -----QMDGF---DSLGQVKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILK 321
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + +VKL DTF G +
Sbjct: 322 IHAAPIAKHGEMDYEAVVKLSDTFNGADL 350
>gi|429736552|ref|ZP_19270447.1| ATPase, AAA family [Selenomonas sp. oral taxon 138 str. F0429]
gi|429154849|gb|EKX97560.1| ATPase, AAA family [Selenomonas sp. oral taxon 138 str. F0429]
Length = 524
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 22/144 (15%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
Q+ R+A + C L I++++ G G + V+ +MV L
Sbjct: 316 QQLRDALTTAENVAPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV 144
+ +E +V ++ T ND S L + L+R GR ++ ++ PT ++R + + R
Sbjct: 364 --WLQECRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTADERRDILRLYMRKYLE 421
Query: 145 AD------DDIVKLVDTFPGQSID 162
D D +V + D F G ++
Sbjct: 422 LDFAGAFADTLVAMTDGFTGADLE 445
>gi|434393705|ref|YP_007128652.1| AAA ATPase central domain protein [Gloeocapsa sp. PCC 7428]
gi|428265546|gb|AFZ31492.1| AAA ATPase central domain protein [Gloeocapsa sp. PCC 7428]
Length = 504
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 35/170 (20%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
+ + G L G GE R R+ + + C L I+++D +GG
Sbjct: 288 LRLDVGRLFGGLVGES----ESRTRQMIQVAEALSPCILWIDEIDKAFAGIGGKGDAGTT 343
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 125
+++ + +A E+ V ++ T ND +L ++R GR ++ ++
Sbjct: 344 SRVFGTFITWLA--------------EKTSPVFVVATANDIQSLPPEMLRKGRFDEIFFV 389
Query: 126 --PTREDRIGVCKGIF-------RNDNVADDDIVKLVDTFPGQSIDFFGA 166
PT+E+R K IF R N+ DI +L P DF GA
Sbjct: 390 GLPTQEER----KAIFTVHLSRLRPHNIKTYDIERLAYETP----DFSGA 431
>gi|389749535|gb|EIM90706.1| AAA-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 785
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA K+ C L I+++DA + +
Sbjct: 166 LGVPFIQVSAPSIVSGMSGESEKTLRETFEEA----KRVAPCLLFIDEIDAITPKR-ESA 220
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM- 119
Q + ++V A + D + ++K EN V +I N L A L R GR
Sbjct: 221 QREMERRIV-AQFLTCMDELS-------WDKTENKPVIVIGATNRPDALDAALRRAGRFD 272
Query: 120 -EKFYWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGALRARVYDDEVR 177
E P E R + K + + D D L PG AL V+
Sbjct: 273 HEISMGVPDDEGRAQILKVLCSKLRLEGDFDFTALAKATPGYVGADLTALTGAAGIIAVK 332
Query: 178 KWISGVGVGSI 188
+ G+ GSI
Sbjct: 333 RIFRGISDGSI 343
>gi|324508906|gb|ADY43754.1| 26S protease regulatory subunit 4 [Ascaris suum]
Length = 422
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 20/129 (15%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I + +L N+GE AKL+R+ +R A K+ C + I+++DA GT +Y +
Sbjct: 230 IRATGADLIQKNSGEGAKLVRELFRLA----KESAPCIVFIDEIDA-----VGTKRYDTS 280
Query: 66 N---QMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
+ + V TL+ + + Q+ G ++ + V II+ N L LIR GR+++
Sbjct: 281 SGGEREVQRTLLELLN-----QMDGFESRGD---VKIIMATNRIDVLDPALIRPGRIDRK 332
Query: 123 YWAPTREDR 131
P +++
Sbjct: 333 IELPKPDEK 341
>gi|386495|gb|AAB27310.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase, Rubisco
activase {ATP gamma-phosphate binding domain, internal
fragment, region III} {EC 4.1.1.39} [Nicotiana
tabacum=tobacco, cv. KY-14, leaves, Peptide Partial, 18
aa]
Length = 18
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 17/18 (94%), Positives = 17/18 (94%)
Query: 97 VPIIVTGNDFSTLYAPLI 114
VPIIVTGNDFSTLY PLI
Sbjct: 1 VPIIVTGNDFSTLYXPLI 18
>gi|320166983|gb|EFW43882.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 5484
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 265 PVPEGCTDPTAENFDPTARSDDGSCQYTL 293
P+P GCT+PTA N++ A DDGSC Y +
Sbjct: 888 PIP-GCTNPTAFNYNSNANQDDGSCVYIV 915
>gi|2960216|emb|CAA11285.1| 26S proteasome regulatory ATPase subunit 10b (S10b) [Manduca sexta]
Length = 396
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 216 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 269
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + +V II+ N TL L+R GR+++ P + R+ + K
Sbjct: 270 -----QMDGF---DSLGQVKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILK 321
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + +VKL DTF G +
Sbjct: 322 IHAAPIAKHGEMDYEAVVKLSDTFNGADL 350
>gi|55377635|ref|YP_135485.1| cell division control protein 48 [Haloarcula marismortui ATCC
43049]
gi|55230360|gb|AAV45779.1| cell division control protein 48 [Haloarcula marismortui ATCC
43049]
Length = 757
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 32/226 (14%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG-RMGGTTQY 62
N I + EL + GE K +R+ + +A ++ + +++D+ AG R GGTT
Sbjct: 527 NFISVKGPELLNKFVGESEKGVREVFSKA----RENAPTVVFFDEIDSIAGERGGGTTDS 582
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
V ++V+ L +L G+ + E V ++ T N + L+R GR+++
Sbjct: 583 GVGERVVSQLL---------TELDGIEDME---NVVVVATTNRPDLIDDALLRPGRLDRH 630
Query: 123 YWAPT--REDRIGVCKGIFRNDNVAD----DDIVKLVDTFPGQSIDFFGALRARVYDDEV 176
P E R + + R+ +AD D++ D + G I+ A+
Sbjct: 631 VHVPVPDEEARRAIFQVHTRDKPLADGVDLDELASRTDGYVGADIE---AVAREASMAAT 687
Query: 177 RKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQE 222
R++I+ V IG S+ N + FE L E G + +E
Sbjct: 688 REFINSVDPEDIGDSVSNVRVTMDHFEH------ALSEVGPSVTEE 727
>gi|226467157|emb|CAX76059.1| Tat-binding protein 10 [Schistosoma japonicum]
gi|226467161|emb|CAX76061.1| Tat-binding protein 10 [Schistosoma japonicum]
gi|226467163|emb|CAX76062.1| Tat-binding protein 10 [Schistosoma japonicum]
Length = 430
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 25/162 (15%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLMINDLDA-GAGRMGGTTQ 61
I +S EL GE A+++R+ + RE A I + ++++D+ G+ R+ T
Sbjct: 236 IRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEVDSIGSTRLESGTG 288
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
Q L+N QL G K+ + +I+ N L + L+R GR+++
Sbjct: 289 GDSEVQRTMLELLN--------QLDGFEPKQN---IKVIMATNRIDILDSALLRPGRIDR 337
Query: 122 F--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ AP E R+ + + R N+ D D+ KL ++ PG S
Sbjct: 338 KIEFPAPNEEARLDILRIHSRKMNLTRDIDLRKLAESMPGAS 379
>gi|357121245|ref|XP_003562331.1| PREDICTED: uncharacterized protein LOC100845363 [Brachypodium
distachyon]
Length = 267
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 252 GNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSC 289
G FY + + + + GC DPT+ FDP A DDGSC
Sbjct: 222 GGFYEEGGDRCKLDIVSGCMDPTSNMFDPLATVDDGSC 259
>gi|482299|pir||A37458 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) - common
tobacco (fragments)
Length = 40
Score = 39.7 bits (91), Expect = 1.6, Method: Composition-based stats.
Identities = 17/18 (94%), Positives = 17/18 (94%)
Query: 97 VPIIVTGNDFSTLYAPLI 114
VPIIVTGNDFSTLY PLI
Sbjct: 23 VPIIVTGNDFSTLYXPLI 40
>gi|426359627|ref|XP_004047068.1| PREDICTED: 26S protease regulatory subunit 10B-like [Gorilla
gorilla gorilla]
Length = 389
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESAHLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHAGPITKHGEIDYEAIVKLSDGFNGADL 343
>gi|226467155|emb|CAX76058.1| Tat-binding protein 10 [Schistosoma japonicum]
Length = 398
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 25/162 (15%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLMINDLDA-GAGRMGGTTQ 61
I +S EL GE A+++R+ + RE A I + ++++D+ G+ R+ T
Sbjct: 204 IRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEVDSIGSTRLESGTG 256
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
Q L+N QL G K+ + +I+ N L + L+R GR+++
Sbjct: 257 GDSEVQRTMLELLN--------QLDGFEPKQN---IKVIMATNRIDILDSALLRPGRIDR 305
Query: 122 F--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ AP E R+ + + R N+ D D+ KL ++ PG S
Sbjct: 306 KIEFPAPNEEARLDILRIHSRKMNLTRDIDLRKLAESMPGAS 347
>gi|260791609|ref|XP_002590821.1| hypothetical protein BRAFLDRAFT_90046 [Branchiostoma floridae]
gi|229276018|gb|EEN46832.1| hypothetical protein BRAFLDRAFT_90046 [Branchiostoma floridae]
Length = 753
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 74/145 (51%), Gaps = 17/145 (11%)
Query: 17 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 76
+ GE + +R+ ++EA I ++G C L I++LDA + GG+ + + N+MV A ++ +
Sbjct: 269 HPGESEENLRRVFQEAVTISEEGP-CVLFIDELDALCPKRGGSGK-SQENRMV-AQMLTL 325
Query: 77 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV 134
D + R+ ++ N + + L R GR +K P +++R +
Sbjct: 326 MD-----------GQAGRGRLVVVAATNRPNAIDPALRRPGRFDKEVHVGVPNQQEREEI 374
Query: 135 CKGIFRNDNVADD-DIVKLVDTFPG 158
+ + R+ ++A+D D+ +L + PG
Sbjct: 375 LRVVSRDMSLAEDVDLNRLAEMTPG 399
>gi|260821714|ref|XP_002606248.1| hypothetical protein BRAFLDRAFT_84010 [Branchiostoma floridae]
gi|229291589|gb|EEN62258.1| hypothetical protein BRAFLDRAFT_84010 [Branchiostoma floridae]
Length = 751
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 74/145 (51%), Gaps = 17/145 (11%)
Query: 17 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 76
+ GE + +R+ ++EA I ++G C L I++LDA + GG+ + + N+MV A ++ +
Sbjct: 269 HPGESEENLRRVFQEAVTISEEGP-CVLFIDELDALCPKRGGSGK-SQENRMV-AQMLTL 325
Query: 77 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV 134
D + R+ ++ N + + L R GR +K P +++R +
Sbjct: 326 MD-----------GQAGRGRLVVVAATNRPNAIDPALRRPGRFDKEVHVGVPNQQEREEI 374
Query: 135 CKGIFRNDNVADD-DIVKLVDTFPG 158
+ + R+ ++A+D D+ +L + PG
Sbjct: 375 LRVVSRDMSLAEDVDLNRLAEMTPG 399
>gi|344211715|ref|YP_004796035.1| cell division control protein 48/AAA family ATPase [Haloarcula
hispanica ATCC 33960]
gi|343783070|gb|AEM57047.1| cell division control protein 48 / AAA family ATPase, CDC48
subfamily [Haloarcula hispanica ATCC 33960]
Length = 757
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 26/208 (12%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG-RMGGTTQY 62
N I + EL + GE K +R+ + +A ++ + +++D+ AG R GGTT
Sbjct: 527 NFISVKGPELLNKFVGESEKGVREVFSKA----RENAPTVVFFDEIDSIAGERGGGTTDS 582
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
V ++V+ L +L G+ + E V ++ T N + L+R GR+++
Sbjct: 583 GVGERVVSQLL---------TELDGIEDME---NVVVVATTNRPDLIDDALLRPGRLDRH 630
Query: 123 YWAPT--REDRIGVCKGIFRNDNVAD----DDIVKLVDTFPGQSIDFFGALRARVYDDEV 176
P E R + + R+ +AD D++ D + G I+ A+
Sbjct: 631 VHVPVPDEEARRAIFQVHTRDKPLADGVDLDELASRTDGYVGADIE---AVAREASMAAT 687
Query: 177 RKWISGVGVGSIGKSLVNSKEAAPTFEQ 204
R++I+ V IG S+ N + FE
Sbjct: 688 REFINSVDPEDIGDSVSNVRVTMDHFEH 715
>gi|415717044|ref|ZP_11466731.1| ATPase [Gardnerella vaginalis 1500E]
gi|388061544|gb|EIK84200.1| ATPase [Gardnerella vaginalis 1500E]
Length = 517
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 22/141 (15%)
Query: 30 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 89
REA + C L I++++ G G + V ++V L +
Sbjct: 315 REALAAADRVAPCVLWIDEIEKGLSGSNGDSGGGVAKRLVGQFLF--------------W 360
Query: 90 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN------ 141
+E +V ++ T ND S+L L+R GR ++ ++ PT ++R + + F
Sbjct: 361 LQESTSKVFLVATANDVSSLPPELLRKGRFDEIFFVDLPTEDERAEILRLCFTKYAKVCP 420
Query: 142 DNVADDDIVKLVDTFPGQSID 162
D +++V+L D F G ID
Sbjct: 421 DPSLINELVELSDGFAGSDID 441
>gi|375083130|ref|ZP_09730162.1| CDC48/VCP like protein, AAA superfamily, partial [Thermococcus
litoralis DSM 5473]
gi|374742216|gb|EHR78622.1| CDC48/VCP like protein, AAA superfamily, partial [Thermococcus
litoralis DSM 5473]
Length = 535
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + E+ S GE K IR+ +R+A ++ + I+++DA A R G T
Sbjct: 304 NFIGIRGPEVLSKWVGESEKNIREIFRKA----RQAAPTVVFIDEIDAIAPRRG-TDVNR 358
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++++N L M EEN V +I N L L+R GR ++
Sbjct: 359 VTDRLINQLLTE------------MDGIEENSGVVVIAATNRPDILDPALLRPGRFDRLI 406
Query: 124 W--APTREDRIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 162
AP + R+ + K RN +A+D ++ K + + G I+
Sbjct: 407 LVPAPDEKARLEIFKVHTRNVPLAEDVSLEELAKRTEGYTGADIE 451
>gi|198418753|ref|XP_002130650.1| PREDICTED: similar to nuclear VCP-like [Ciona intestinalis]
Length = 779
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
GIN I + EL + GE + +RQ + A + C + ++LD+ R + +
Sbjct: 557 GINFISVKGPELLNMYVGESERAVRQCFERA----RNSAPCVVFFDELDSLCPRR-TSAE 611
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
+ ++VN L +L G+ ++++ V ++ N + ++R GR++K
Sbjct: 612 SGASARVVNQML---------TELDGLESRKQ---VFVVAATNRPDIIDPAILRPGRLDK 659
Query: 122 FYWA--PTREDRIGVCKGIFRN 141
+ PT EDRI + + I +N
Sbjct: 660 VLYVGIPTTEDRIQILRTITKN 681
>gi|356502624|ref|XP_003520118.1| PREDICTED: cell division control protein 48 homolog B-like [Glycine
max]
Length = 606
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 13/137 (9%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G + ++S + +AGE +++R+ + EA+ + GK + I+++DA R +
Sbjct: 73 GAHLTVISPHSVHRAHAGESERILREAFSEASSHVALGKPSVIFIDEIDALCARRDSKRE 132
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM-- 119
V TLM+ ++ PT P V ++ + N + L R GR
Sbjct: 133 QDVRVASQLFTLMD-SNKPTF----------STPGVVVVASTNRVDAIDPALRRSGRFDA 181
Query: 120 EKFYWAPTREDRIGVCK 136
E P +DR + K
Sbjct: 182 EIEVTVPNEDDRFQILK 198
>gi|341583068|ref|YP_004763560.1| cell division protein CDC48 [Thermococcus sp. 4557]
gi|340810726|gb|AEK73883.1| cell division protein CDC48 [Thermococcus sp. 4557]
Length = 795
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + E+ S GE K IR+ +R+A ++ + I+++DA A R G +
Sbjct: 577 NFIAIKGPEVLSKWVGESEKNIREIFRKA----RQAAPTVIFIDEIDAIAPRRGTDVNH- 631
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++++N L M +EN V +I N + L+R GR ++
Sbjct: 632 VTDRLINQLLTE------------MDGIQENSGVVVIAATNRPDIIDPALLRPGRFDRLI 679
Query: 124 W--APTREDRIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 162
AP + R+ + K RN +A+D ++ K + + G I+
Sbjct: 680 LVPAPDEKARLEIFKVHTRNVPLAEDVRLEELAKRTEGYTGADIE 724
>gi|14590568|ref|NP_142636.1| cell division control [Pyrococcus horikoshii OT3]
gi|3257095|dbj|BAA29778.1| 840aa long hypothetical cell division control protein (transitional
endoplasmic reticulum ATPase) [Pyrococcus horikoshii
OT3]
Length = 840
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + E+ S GE K IR+ +R+A ++ + I+++DA A G +
Sbjct: 608 NFIAVRGPEVLSKWVGESEKRIREIFRKA----RQAAPAIIFIDEIDAIAPARGTSEGEK 663
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++++N L ++ G+ EN V +I N L L+R GR ++
Sbjct: 664 VTDRIINQLL---------TEMDGLV---ENSGVVVIAATNRPDILDPALLRPGRFDRLI 711
Query: 124 W--APTREDRIGVCKGIFRNDNVADD 147
AP E R + K R+ +ADD
Sbjct: 712 LVPAPDEEARFEIFKVHTRSMPLADD 737
>gi|390472883|ref|XP_002756429.2| PREDICTED: 26S protease regulatory subunit 10B-like [Callithrix
jacchus]
Length = 402
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A LIR+ + A D + C + ++++DA GR+ ++ T ++ + TLM
Sbjct: 222 GESAHLIREMFNYARD----HQPCIIFMDEIDAIGGRL--FSEGTSADREIQRTLME--- 272
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
+ Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 273 --SLNQMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 327
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 328 IHAGPITKHGEIDYEAIVKLSDGFNGADL 356
>gi|353242842|emb|CCA74450.1| probable RPT4-26S proteasome regulatory subunit [Piriformospora
indica DSM 11827]
Length = 389
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A ++ + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFGYA----REHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DSLGRVKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILK 314
Query: 137 GIFRNDNVADD----DIVKLVDTFPGQSI 161
R+ N + D IVKL D F G +
Sbjct: 315 IHARSVNKSGDIDYEAIVKLSDGFNGADL 343
>gi|254387365|ref|ZP_05002615.1| ATPase [Streptomyces sp. Mg1]
gi|194346160|gb|EDX27126.1| ATPase [Streptomyces sp. Mg1]
Length = 521
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 30/146 (20%)
Query: 28 RYREAADIIKKGKMCCLMINDLD---AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQ 84
R+REA + + C L I++++ AGAG G Q + +
Sbjct: 316 RFREALETADRVAPCVLWIDEIEKGLAGAGDGTGVPQRIIGQFL---------------- 359
Query: 85 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCKGIF 139
+ +E R ++ T ND +L L+R GR ++ ++ A RE+ IG+ +
Sbjct: 360 ---FWLQESQSRSFVVATANDVRSLPPELLRKGRFDELFFVDLPDAQDREEIIGIYYRRY 416
Query: 140 RNDNVADDDIVKLVDT---FPGQSID 162
+ + + +LVD F G I+
Sbjct: 417 LKTDPDPEQLARLVDLSEGFAGSDIE 442
>gi|50553670|ref|XP_504246.1| YALI0E21868p [Yarrowia lipolytica]
gi|49650115|emb|CAG79841.1| YALI0E21868p [Yarrowia lipolytica CLIB122]
Length = 410
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G N I A + GE A+LIR+ + A K+ + C + ++++DA GR +
Sbjct: 212 IGANFIFSPASAIVDKYIGESARLIREMFGYA----KEHEPCIIFMDEVDAIGGRR--FS 265
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
+ T +++ + TLM + + G + +I+ N TL L+R GR++
Sbjct: 266 EGTSSDREIQRTLMELLNQMDGFDYLG--------KTKVIMATNRPDTLDPALLRAGRLD 317
Query: 121 KFYWAPTRED--RIGVCK----GIFRNDNVADDDIVKLVDTFPGQSI 161
+ P + R+ V K G+ + + + +VK+ D F G I
Sbjct: 318 RKIEIPLPNEAGRLEVFKIHAAGVQKQGEIDYEALVKMSDGFNGADI 364
>gi|242767242|ref|XP_002341331.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Talaromyces stipitatus ATCC 10500]
gi|218724527|gb|EED23944.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Talaromyces stipitatus ATCC 10500]
Length = 740
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 109/258 (42%), Gaps = 36/258 (13%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA KK C + I+++DA + +
Sbjct: 232 LGVPFISISAPSVVSGMSGESEKALREHFDEA----KKVAPCLIFIDEIDAITPKR-ESA 286
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + P V ++ N +L L R GR +
Sbjct: 287 QREMEKRIVAQLL-------TCMDDLALEKTNGKP-VIVLAATNRPDSLDPALRRGGRFD 338
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
K P+ R + + + R +ADD + T ++ F GA ++
Sbjct: 339 KEINLTVPSEPVREQILRTLTRKMQLADDLDFQ---TLAKRTAGFVGA--------DLND 387
Query: 179 WISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSE 238
+S G +I + L K A T E+ M +E G E VK ++ K+ E
Sbjct: 388 LVSTAGAAAIKRYLELLK--ANTGEE--MDIE-----GETEQDLTEKVKEIRRLIKHAKE 438
Query: 239 AALG-EANEDAIQSGNFY 255
A +G E N + + +F+
Sbjct: 439 APMGQETNPVLVSNADFF 456
>gi|14591590|ref|NP_143672.1| cell division control [Pyrococcus horikoshii OT3]
gi|3258278|dbj|BAA30961.1| 798aa long hypothetical transitional endoplasmic reticulum ATPase
[Pyrococcus horikoshii OT3]
Length = 798
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 19/146 (13%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + E+ S GE K IR+ +R+A ++ + I+++DA A R G T
Sbjct: 580 NFIAVRGPEVLSKWVGESEKNIREIFRKA----RQAAPTVIFIDEIDAIAPRRG-TDVNR 634
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++++N L M +EN V +I N L L+R GR ++
Sbjct: 635 VTDRLINQLLTE------------MDGIQENTGVVVIAATNRPDILDPALLRPGRFDRLI 682
Query: 124 W--APTREDRIGVCKGIFRNDNVADD 147
AP E R + K R+ +ADD
Sbjct: 683 LVPAPDEEARFEIFKVHTRSMPLADD 708
>gi|296108730|ref|YP_003615679.1| ATPase AAA [methanocaldococcus infernus ME]
gi|295433544|gb|ADG12715.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus infernus ME]
Length = 903
Score = 39.3 bits (90), Expect = 2.1, Method: Composition-based stats.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + E+ S GE K IR+ +++A ++ C + +++DA A + G
Sbjct: 511 GANFISVKGPEIFSKWVGESEKAIREIFKKA----RQNAPCIIFFDEIDAIAPKRGRDIS 566
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
V +++VN L +L G+ EE V +I N + L+R GR+++
Sbjct: 567 SGVTDKVVNQIL---------TELDGL---EEPKDVVVIAATNRPDIIDPALLRPGRLDR 614
Query: 122 FYWAPTRED--RIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 162
P ++ R+ + K R ++A+D ++ K + + G I+
Sbjct: 615 IILVPVPDEKARLDIFKIHTRGMSLAEDVDLEELAKKTEGYTGADIE 661
>gi|71028288|ref|XP_763787.1| 26S proteasome regulatory subunit [Theileria parva strain Muguga]
gi|68350741|gb|EAN31504.1| 26S proteasome regulatory subunit, putative [Theileria parva]
Length = 415
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G N + + A + GE AK+IR+ + A D + C + I+++DA GR +
Sbjct: 217 LGCNFLKVVASAVVDKYIGESAKIIREMFGYAKD----NQPCIIFIDEIDAIGGRR--FS 270
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q T ++ + TLM + L G +E +V II+ N L L+R GR++
Sbjct: 271 QGTSADREIQRTLMEL-----LTHLDGF---DELGQVKIIMATNRPDVLDPALLRPGRID 322
Query: 121 KFYWAPTRED--RIGVCKGIFRNDNVAD----DDIVKLVDTFPGQSI 161
+ P + RI + K + N+ ++I KL D F G +
Sbjct: 323 RKIEIPLPNETARIEILKIHTQKLNIQYPINFNNICKLCDGFNGADL 369
>gi|452823572|gb|EME30581.1| AAA-type ATPase [Galdieria sulphuraria]
Length = 699
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + EL + GE + +R+ ++ + C + ++LDA A R GG
Sbjct: 482 GANFISIKGPELLNKYVGESERAVRRVFQRG----RASAPCIIFFDELDALAPRRGGFAS 537
Query: 62 YTVNNQMVNAT-LMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
YT + +++ N +L G+ E +V +I N + ++R GR++
Sbjct: 538 YTDSESFGSSSGASERVVNQLLTELDGV---EARSQVFVIAATNRPDMIDPAMLRPGRLD 594
Query: 121 KFYWAPT--REDRIGVCKGIFRNDNVADD 147
K + P + R + + + R +ADD
Sbjct: 595 KLLFVPLPDKYGRKAILETLTRKMPLADD 623
>gi|321263320|ref|XP_003196378.1| 6S protease subunit rpt4 [Cryptococcus gattii WM276]
gi|317462854|gb|ADV24591.1| 6S protease subunit rpt4, putative [Cryptococcus gattii WM276]
Length = 405
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A ++ + C + ++++DA GR +Q T ++ + TLM + +
Sbjct: 225 GESARLIREMFAYA----REHEPCVIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN 278
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV-- 134
Q+ G + R II+ N TL L+R GR+++ P + R+ +
Sbjct: 279 -----QMDGF---DSLGRTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILK 330
Query: 135 --CKGIFRNDNVADDDIVKLVDTFPGQSI 161
K + ++ ++ + IVKL D F G +
Sbjct: 331 IHAKKVNKSGDIDYEAIVKLSDGFNGADL 359
>gi|387915818|gb|AFK11518.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6
[Callorhinchus milii]
Length = 389
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 20/144 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTF 156
I ++ + + +VKL D F
Sbjct: 315 IHAGPITKHGEIDYEAVVKLSDGF 338
>gi|337283526|ref|YP_004623000.1| cell division control protein [Pyrococcus yayanosii CH1]
gi|334899460|gb|AEH23728.1| cell division control protein [Pyrococcus yayanosii CH1]
Length = 836
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 18/146 (12%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + E+ S GE K IR+ +R+A ++ + I+++DA A G
Sbjct: 606 NFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAPAIIFIDEIDAIAPARGAVEGER 661
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++++N L M EEN V +I N L L+R GR ++
Sbjct: 662 VTDRLINQLLTE------------MDGIEENSGVVVIAATNRPDILDPALLRPGRFDRLI 709
Query: 124 W--APTREDRIGVCKGIFRNDNVADD 147
AP R+ + + RN +A D
Sbjct: 710 LVPAPDERARLEIFRVHTRNMPLAKD 735
>gi|88807547|ref|ZP_01123059.1| hypothetical protein WH7805_13388 [Synechococcus sp. WH 7805]
gi|88788761|gb|EAR19916.1| hypothetical protein WH7805_13388 [Synechococcus sp. WH 7805]
Length = 499
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 17/95 (17%)
Query: 42 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 101
C L I+++D G G++GG+ T +Q V AT++ + E+ V ++
Sbjct: 322 CVLWIDEIDKGFGQVGGSDGGT--SQRVLATVLT-------------WMAEKRSAVFVVA 366
Query: 102 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV 134
T N L L+R GR ++ + P+R++R G+
Sbjct: 367 TANGVERLPPELLRKGRFDEIFLLDLPSRDERCGI 401
>gi|257387362|ref|YP_003177135.1| proteasome-activating nucleotidase [Halomicrobium mukohataei DSM
12286]
gi|257169669|gb|ACV47428.1| 26S proteasome subunit P45 family [Halomicrobium mukohataei DSM
12286]
Length = 406
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I M+ EL GE A+L+R + AAD + + I+++DA A + T T
Sbjct: 214 IKMAGSELVRKFIGEGARLVRDLFELAAD----REPAVIFIDEIDAIAAKR--TESKTSG 267
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 125
+ V T+M + L M +E + II N F L ++R GR ++
Sbjct: 268 DAEVQRTMMQL--------LSEMDGFDERGEIRIIAATNRFDMLDRAILRPGRFDRLIEV 319
Query: 126 P 126
P
Sbjct: 320 P 320
>gi|448534026|ref|ZP_21621530.1| ATPase AAA [Halorubrum hochstenium ATCC 700873]
gi|445705241|gb|ELZ57142.1| ATPase AAA [Halorubrum hochstenium ATCC 700873]
Length = 745
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 65/172 (37%), Gaps = 23/172 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQ---RYREAADIIKKGKMCCLMINDLDAGAGRMGG 58
G+N I ++ EL GE K +R+ R R+AA I + D DA G G
Sbjct: 545 GVNFIQVAGPELLDRYVGESEKAVRELFDRARQAAPAIVFFDEIDAVATDRDAAGGDGSG 604
Query: 59 TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 118
+ V+ + L DNP V ++ N L L+R GR
Sbjct: 605 VGERVVSQLLTE--LDRAGDNPNLV---------------VLAATNRRDALDRALLRPGR 647
Query: 119 MEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGAL 167
+E P RE R + R +ADD D+ +L D G S AL
Sbjct: 648 LETHVEVPEPDREARRKILDVHTREKPIADDVDVERLADETEGYSGAEIAAL 699
>gi|414078652|ref|YP_006997970.1| AAA ATPase [Anabaena sp. 90]
gi|413972068|gb|AFW96157.1| AAA ATPase [Anabaena sp. 90]
Length = 532
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 20/134 (14%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTV 64
+ + G L G GE IRQ + +++ C L I++ D G + GT +
Sbjct: 309 LRLDVGRLFGGIVGESESRIRQVIK----LVEAIAPCVLFIDEADKAFGNVNTGTDGDSG 364
Query: 65 NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 124
++ V +L+ + +E+ V I++T N+ L A L+R GR+++ +W
Sbjct: 365 TSRRVFGSLIT-------------WMQEKVSPVFIVLTANNVEILPAELLRKGRLDEIFW 411
Query: 125 --APTREDRIGVCK 136
P +++R+ + +
Sbjct: 412 LNLPNQKERLQIFR 425
>gi|391332687|ref|XP_003740763.1| PREDICTED: 26S protease regulatory subunit 10B-like [Metaseiulus
occidentalis]
Length = 403
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 223 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 276
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + +V II+ N TL L+R GR+++ P + R+ + K
Sbjct: 277 -----QMDGF---DALGQVKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDILK 328
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ ++ + +VKL D F G +
Sbjct: 329 IHARSITKHGDIDWEAVVKLSDGFNGADL 357
>gi|405122542|gb|AFR97308.1| ATPase [Cryptococcus neoformans var. grubii H99]
Length = 405
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A ++ + C + ++++DA GR +Q T ++ + TLM + +
Sbjct: 225 GESARLIREMFAYA----REHEPCVIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN 278
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV-- 134
Q+ G + R II+ N TL L+R GR+++ P + R+ +
Sbjct: 279 -----QMDGF---DSLGRTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILK 330
Query: 135 --CKGIFRNDNVADDDIVKLVDTFPGQSI 161
K + ++ ++ + IVKL D F G +
Sbjct: 331 IHAKKVNKSGDIDYEAIVKLSDGFNGADL 359
>gi|448410103|ref|ZP_21575052.1| cell division control protein 48/AAA family ATPase [Halosimplex
carlsbadense 2-9-1]
gi|445672383|gb|ELZ24959.1| cell division control protein 48/AAA family ATPase [Halosimplex
carlsbadense 2-9-1]
Length = 756
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 26/208 (12%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGG-TTQY 62
N I + EL + GE K +R+ + +A + + +++D+ AG GG TT
Sbjct: 527 NFISIKGPELLNKFVGESEKGVREVFEKA----RANAPTVVFFDEIDSIAGERGGNTTDS 582
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
V ++V+ L +L G+ EE V +I T N + + L+R GR+++
Sbjct: 583 GVGERVVSQLL---------TELDGL---EELEDVVVIATTNRPDLIDSALLRPGRLDRH 630
Query: 123 YWAPT--REDRIGVCKGIFRNDNVAD----DDIVKLVDTFPGQSIDFFGALRARVYDDEV 176
P E R + + R+ +A+ DD+ D + G I+ A+
Sbjct: 631 VHVPVPDEEGRRKIFEVHTRDKPLAEGVDLDDLAARTDGYVGADIE---AVTREASMAAT 687
Query: 177 RKWISGVGVGSIGKSLVNSKEAAPTFEQ 204
R++++ V IG S+ N K FE
Sbjct: 688 REFLASVDPEDIGDSVGNVKVTMDHFEH 715
>gi|84996219|ref|XP_952831.1| 26S proteasome ATPase subunit [Theileria annulata strain Ankara]
gi|65303829|emb|CAI76206.1| 26S proteasome ATPase subunit, putative [Theileria annulata]
Length = 448
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 20/164 (12%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G N + + A + GE AK+IR+ + A D + C + I+++DA GR +
Sbjct: 250 LGCNFLKVVASAVVDKYIGESAKIIREMFGYAKD----NQPCIIFIDEIDAIGGRR--FS 303
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q T ++ + TLM + L G +E +V II+ N L L+R GR++
Sbjct: 304 QGTSADREIQRTLMEL-----LTHLDGF---DELGQVKIIMATNRPDVLDPALLRPGRID 355
Query: 121 KFYWAPTRED--RIGVCKGIFRNDNVA----DDDIVKLVDTFPG 158
+ P + RI + K + N+ ++I KL D F G
Sbjct: 356 RKIEIPLPNETARIEILKIHTQKLNIQYPINYNNICKLCDGFNG 399
>gi|448677880|ref|ZP_21689070.1| cell division control protein 48 [Haloarcula argentinensis DSM
12282]
gi|445773555|gb|EMA24588.1| cell division control protein 48 [Haloarcula argentinensis DSM
12282]
Length = 757
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 26/208 (12%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG-RMGGTTQY 62
N I + EL + GE K +R+ + +A ++ + +++D+ AG R GGTT
Sbjct: 527 NFISVKGPELLNKFVGESEKGVREVFSKA----RENAPTVVFFDEIDSIAGERGGGTTDS 582
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
V ++V+ L +L G+ + E V ++ T N + L+R GR+++
Sbjct: 583 GVGERVVSQLL---------TELDGIEDME---NVVVVATTNRPDLIDDALLRPGRLDRH 630
Query: 123 YWAPT--REDRIGVCKGIFRNDNVAD----DDIVKLVDTFPGQSIDFFGALRARVYDDEV 176
P E R + + R+ +AD D + D + G I+ A+
Sbjct: 631 VHVPVPDEEARRAIFQVHTRDKPLADGVDLDQLASRTDGYVGADIE---AVAREASMAAT 687
Query: 177 RKWISGVGVGSIGKSLVNSKEAAPTFEQ 204
R++I+ V IG S+ N + FE
Sbjct: 688 REFINSVDPEEIGDSVSNVRVTMDHFEH 715
>gi|365153042|ref|ZP_09349486.1| ATP-dependent metallopeptidase HflB [Campylobacter sp. 10_1_50]
gi|363652358|gb|EHL91398.1| ATP-dependent metallopeptidase HflB [Campylobacter sp. 10_1_50]
Length = 558
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
+R RE K + I+++DA GGT N ATL N ++
Sbjct: 239 KRVRELFSRAKSYAPSIIFIDEIDAVGKSRGGT-----RNDEREATL-----NQLLTEMD 288
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDN- 143
G E+N V +I N + L+R GR ++ F P DR+ + R+ N
Sbjct: 289 GF---EDNSGVIVIAATNRIEMIDEALLRSGRFDRRIFLSMPDFNDRVAILNTYLRDKNC 345
Query: 144 -VADDDIVKLVDTFPGQSI 161
V+ +DI ++ F G ++
Sbjct: 346 EVSAEDIARMSVGFSGAAL 364
>gi|392394101|ref|YP_006430703.1| ATP-dependent Zn protease [Desulfitobacterium dehalogenans ATCC
51507]
gi|390525179|gb|AFM00910.1| ATP-dependent Zn protease [Desulfitobacterium dehalogenans ATCC
51507]
Length = 493
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 13/144 (9%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM--CCLMINDLDAGAGRMGGTTQYT 63
+ +S E AG A+ +R+ +++A + KK K + I+++D + G +
Sbjct: 127 LAVSGSEFVEMYAGVGAERVRKLFKKARETAKKEKKDRAIIFIDEMDILGAKRGSNVSHH 186
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
+Q +N L V++ G+ N E+ ++ +I N L L+R GR ++
Sbjct: 187 EYDQTLNQLL---------VEMDGLGNSEQGSQILVIAATNRAEALDPALLRPGRFDRQV 237
Query: 124 WA--PTREDRIGVCKGIFRNDNVA 145
P +E R+ + +N +A
Sbjct: 238 KVDLPDKEGRLAILTIHTKNKPLA 261
>gi|415883676|ref|ZP_11545705.1| AAA ATPase central domain protein [Bacillus methanolicus MGA3]
gi|387591471|gb|EIJ83788.1| AAA ATPase central domain protein [Bacillus methanolicus MGA3]
Length = 520
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 22/143 (15%)
Query: 28 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPG 87
R +EA C L I++++ G G + +MV L + ++P
Sbjct: 312 RLKEALATADHVAPCVLWIDEIEKGLAGAVGGGDGGTSTRMVGQFLYWLQESPA------ 365
Query: 88 MYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT---RED--RIGVCKGIFR 140
RV ++ T ND S L L+R GR ++ ++ PT RE+ RI + KG+ R
Sbjct: 366 --------RVFVVATANDVSKLPPELLRRGRFDELFFVDLPTPKEREEIIRIYINKGLKR 417
Query: 141 NDNVA-DDDIVKLVDTFPGQSID 162
+ + + + +V+L D F G I+
Sbjct: 418 DVSPSLLEKLVRLSDGFAGADIE 440
>gi|416115867|ref|ZP_11594218.1| Cell division protein FtsH [Campylobacter concisus UNSWCD]
gi|384577650|gb|EIF06929.1| Cell division protein FtsH [Campylobacter concisus UNSWCD]
Length = 550
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
+R RE K + I+++DA GGT N ATL N ++
Sbjct: 231 KRVRELFSRAKSYAPSIIFIDEIDAVGKSRGGT-----RNDEREATL-----NQLLTEMD 280
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDN- 143
G E+N V +I N + L+R GR ++ F P DR+ + R+ N
Sbjct: 281 GF---EDNSGVIVIAATNRIEMIDEALLRSGRFDRRIFLSMPDFNDRVAILNTYLRDKNC 337
Query: 144 -VADDDIVKLVDTFPGQSI 161
V+ +DI ++ F G ++
Sbjct: 338 EVSAEDIARMSVGFSGAAL 356
>gi|154151004|ref|YP_001404622.1| proteasome-activating nucleotidase [Methanoregula boonei 6A8]
gi|166199290|sp|A7I8B8.1|PAN_METB6 RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
AltName: Full=Proteasomal ATPase; AltName:
Full=Proteasome regulatory ATPase; AltName:
Full=Proteasome regulatory particle
gi|153999556|gb|ABS55979.1| 26S proteasome subunit P45 family [Methanoregula boonei 6A8]
Length = 436
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 11 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMV 69
EL GE A+L+R+ + D+ KK + I+++DA GA R T T ++ V
Sbjct: 246 SELVQKYIGEGARLVRELF----DLAKKKAPTIIFIDEIDAVGASR---TEANTSGDREV 298
Query: 70 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-- 127
TLM + L GM E V II N L L+R GR ++ P
Sbjct: 299 QRTLMQL--------LAGMDGFETRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLPD 350
Query: 128 REDRIGVCK 136
E R+ + K
Sbjct: 351 EEGRLSILK 359
>gi|302503873|ref|XP_003013896.1| hypothetical protein ARB_08008 [Arthroderma benhamiae CBS 112371]
gi|291177462|gb|EFE33256.1| hypothetical protein ARB_08008 [Arthroderma benhamiae CBS 112371]
Length = 743
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 15/149 (10%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R + EA KK C + ++++DA + +
Sbjct: 235 LGVPFIAISAPSIISGMSGESEKALRDHFEEA----KKVAPCLIFMDEIDAITPKR-ESA 289
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L L R GR +
Sbjct: 290 QREMEKRIVAQLL-------TCMDDLALAKTDGKP-VIVLAATNRPDSLDPALRRGGRFD 341
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD 147
K P+ R + + + R N+ADD
Sbjct: 342 KEINLTVPSEPVREQILRALTREMNLADD 370
>gi|302659175|ref|XP_003021281.1| hypothetical protein TRV_04594 [Trichophyton verrucosum HKI 0517]
gi|291185172|gb|EFE40663.1| hypothetical protein TRV_04594 [Trichophyton verrucosum HKI 0517]
Length = 747
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 15/149 (10%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R + EA KK C + ++++DA + +
Sbjct: 239 LGVPFIAISAPSIISGMSGESEKALRDHFEEA----KKVAPCLIFMDEIDAITPKR-ESA 293
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L L R GR +
Sbjct: 294 QREMEKRIVAQLL-------TCMDDLALAKTDGKP-VIVLAATNRPDSLDPALRRGGRFD 345
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD 147
K P+ R + + + R N+ADD
Sbjct: 346 KEINLTVPSEPVREQILRALTREMNLADD 374
>gi|157164271|ref|YP_001466756.1| M41 family peptidase [Campylobacter concisus 13826]
gi|157101415|gb|EAT97495.2| putative Cell division protease FtsH homolog [Campylobacter
concisus 13826]
Length = 558
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
+R RE K + I+++DA GGT N ATL N ++
Sbjct: 239 KRVRELFSRAKSYAPSIIFIDEIDAVGKSRGGT-----RNDEREATL-----NQLLTEMD 288
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDN- 143
G E+N V +I N + L+R GR ++ F P DR+ + R+ N
Sbjct: 289 GF---EDNSGVIVIAATNRIEMIDEALLRSGRFDRRIFLSMPDFNDRVAILNTYLRDKNC 345
Query: 144 -VADDDIVKLVDTFPGQSI 161
V+ +DI ++ F G ++
Sbjct: 346 EVSAEDIARMSVGFSGAAL 364
>gi|326470013|gb|EGD94022.1| ribosome biogenesis ATPase RIX7 [Trichophyton tonsurans CBS 112818]
Length = 743
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 15/149 (10%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R + EA KK C + ++++DA + +
Sbjct: 235 LGVPFIAISAPSIISGMSGESEKALRDHFEEA----KKVAPCLIFMDEIDAITPKR-ESA 289
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L L R GR +
Sbjct: 290 QREMEKRIVAQLL-------TCMDDLALAKTDGKP-VIVLAATNRPDSLDPALRRGGRFD 341
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD 147
K P+ R + + + R N+ADD
Sbjct: 342 KEINLTVPSEPVREQILRALTREMNLADD 370
>gi|242008303|ref|XP_002424946.1| 26S protease regulatory subunit S10B, putative [Pediculus humanus
corporis]
gi|212508560|gb|EEB12208.1| 26S protease regulatory subunit S10B, putative [Pediculus humanus
corporis]
Length = 395
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 215 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 268
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + +V II+ N TL L+R GR+++ P + R+ + K
Sbjct: 269 -----QMDGF---DSLGQVKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILK 320
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 321 IHAMPITKHGEIDYEAIVKLSDGFNGADL 349
>gi|442753613|gb|JAA68966.1| Putative 26s proteasome regulatory complex atpase rpt4 [Ixodes
ricinus]
Length = 404
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 224 GESARLIREMFNYARD----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 277
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + +V II+ N TL L+R GR+++ P + R+ + K
Sbjct: 278 -----QMDGF---DSLGQVKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIVK 329
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ V + +VKL D F G +
Sbjct: 330 IHAAPITKHGEVDWEAVVKLSDGFNGADL 358
>gi|336477419|ref|YP_004616560.1| 26S proteasome subunit P45 family protein [Methanosalsum zhilinae
DSM 4017]
gi|335930800|gb|AEH61341.1| 26S proteasome subunit P45 family [Methanosalsum zhilinae DSM 4017]
Length = 410
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 20/162 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I MS +L GE A+L+R ++ A D L I+++DA G T T
Sbjct: 218 IRMSGSDLVQKFVGEGARLVRDVFQMARD----KSPSILFIDEIDAVGGMR--THDGTTG 271
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 125
+ VN T++ + L M + V II N L L+R GR ++
Sbjct: 272 SAEVNRTMLQL--------LAEMDGFDPTGDVKIIAATNRIDLLDPALLRPGRFDRIIEV 323
Query: 126 PT-----REDRIGV-CKGIFRNDNVADDDIVKLVDTFPGQSI 161
P R D + + + + D+V D + KL D F G +
Sbjct: 324 PLPDESGRSDILKIHTRHMSLGDDVDFDRLAKLTDGFSGADL 365
>gi|406700181|gb|EKD03362.1| ATPase [Trichosporon asahii var. asahii CBS 8904]
Length = 399
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+L+R+ + A ++ + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 219 GESARLVREMFAYA----REHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 272
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV-- 134
Q+ G + R +I+ N TL L+R GR+++ P + R+ +
Sbjct: 273 -----QMDGF---DSLGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILK 324
Query: 135 --CKGIFRNDNVADDDIVKLVDTFPGQSI 161
KGI ++ ++ + +VKL D F G +
Sbjct: 325 IHAKGINKSGDIDYEAVVKLSDGFNGADL 353
>gi|401886263|gb|EJT50312.1| ATPase [Trichosporon asahii var. asahii CBS 2479]
Length = 403
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+L+R+ + A ++ + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 223 GESARLVREMFAYA----REHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 276
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV-- 134
Q+ G + R +I+ N TL L+R GR+++ P + R+ +
Sbjct: 277 -----QMDGF---DSLGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILK 328
Query: 135 --CKGIFRNDNVADDDIVKLVDTFPGQSI 161
KGI ++ ++ + +VKL D F G +
Sbjct: 329 IHAKGINKSGDIDYEAVVKLSDGFNGADL 357
>gi|367006109|ref|XP_003687786.1| hypothetical protein TPHA_0K02220 [Tetrapisispora phaffii CBS 4417]
gi|357526091|emb|CCE65352.1| hypothetical protein TPHA_0K02220 [Tetrapisispora phaffii CBS 4417]
Length = 820
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I +SA + SG +GE K IR+ + EA + C + +++DA + G Q +
Sbjct: 257 ISISAPSVVSGMSGESEKKIRELFDEAKSLAP----CLMFFDEIDAITPKRDGGAQREME 312
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFY 123
++V A L+ D + + G P+IV G N +L A L R GR ++
Sbjct: 313 RRIV-AQLLTAMDELSMEKTGGK---------PVIVIGATNRPDSLDAALRRAGRFDREI 362
Query: 124 W--APTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA-LRARV 171
P R+ + K + + + + D +KL PG F GA L+A V
Sbjct: 363 CLNVPNEVSRLHILKKMSEHLKIKGEIDYLKLAKLTPG----FVGADLKALV 410
>gi|326482765|gb|EGE06775.1| ribosome biogenesis ATPase RIX7 [Trichophyton equinum CBS 127.97]
Length = 743
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 15/149 (10%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R + EA KK C + ++++DA + +
Sbjct: 235 LGVPFIAISAPSIISGMSGESEKALRDHFEEA----KKVAPCLIFMDEIDAITPKR-ESA 289
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L L R GR +
Sbjct: 290 QREMEKRIVAQLL-------TCMDDLALAKTDGKP-VIVLAATNRPDSLDPALRRGGRFD 341
Query: 121 KF--YWAPTREDRIGVCKGIFRNDNVADD 147
K P+ R + + + R N+ADD
Sbjct: 342 KEINLTVPSEPVREQILRALTREMNLADD 370
>gi|29825445|gb|AAO92283.1| 26S proteasome regulatory subunit [Dermacentor variabilis]
Length = 402
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 222 GESARLIREMFNYARD----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 275
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + +V II+ N TL L+R GR+++ P + R+ + K
Sbjct: 276 -----QMDGF---DSLGQVKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIVK 327
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ V + +VKL D F G +
Sbjct: 328 IHATPITKHGEVDWEAVVKLSDGFNGADL 356
>gi|225713006|gb|ACO12349.1| 26S protease regulatory subunit S10B [Lepeophtheirus salmonis]
gi|290561741|gb|ADD38268.1| 26S protease regulatory subunit S10B [Lepeophtheirus salmonis]
Length = 392
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 212 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 265
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK 136
+ G +V +I+ N TL L+R GR+++ P D R+ + K
Sbjct: 266 QMDGFDVLG--------QVKMIMATNRPDTLDPALLRPGRLDRKVEIPLPNDQARLEILK 317
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + +VKL D F G +
Sbjct: 318 IHAGPITKHGEIDYEAVVKLSDGFNGADL 346
>gi|339234579|ref|XP_003378844.1| 26S protease regulatory subunit S10B [Trichinella spiralis]
gi|316978544|gb|EFV61519.1| 26S protease regulatory subunit S10B [Trichinella spiralis]
Length = 452
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A++IR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 216 GESARMIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 269
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIG 133
Q+ G + +V II+ N TL L+R GR+++ P R D I
Sbjct: 270 -----QMDGF---DALGKVKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIIK 321
Query: 134 V-CKGIFRNDNVADDDIVKLVDTFPGQSI 161
+ K I + + + +VKL D F G +
Sbjct: 322 IHAKPITKKGIIDFESVVKLSDGFSGADL 350
>gi|403341369|gb|EJY69989.1| ATPase, AAA family protein [Oxytricha trifallax]
Length = 648
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 28/187 (14%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G+N I + EL S G+ K IR+ +R+A + + +++DA A + G
Sbjct: 436 GLNFIAIKGPELFSKYVGDTEKAIREIFRKA----RLSSPSIIFFDEIDAMATQRGNDE- 490
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
+++D C L M E +V ++ N + L+R GR ++
Sbjct: 491 ------------TSVSDRALCQLLNEMDGVESRAQVIVVAATNRLDIIDTALLRPGRFDR 538
Query: 122 FYWAP-----TRED--RIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFF---GALRARV 171
+ P RE RI V K + ++D++ + + + D G I L+A
Sbjct: 539 LIYVPLPSQQAREQILRINVGK-MQKSDDIDYEKLARETDGMSGAEIALICREAGLKALT 597
Query: 172 YDDEVRK 178
D + K
Sbjct: 598 QDMNIEK 604
>gi|346472533|gb|AEO36111.1| hypothetical protein [Amblyomma maculatum]
Length = 361
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 181 GESARLIREMFNYARD----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 234
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + +V II+ N TL L+R GR+++ P + R+ + K
Sbjct: 235 -----QMDGF---DSLGQVKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIVK 286
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ V + +VKL D F G +
Sbjct: 287 IHAAPITKHGEVDWEAVVKLSDGFNGADL 315
>gi|399217513|emb|CCF74400.1| unnamed protein product [Babesia microti strain RI]
Length = 419
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I + EL GE A+++R+ ++ A + K C L I+++DA G G + +
Sbjct: 224 ICVIGSELVQKYVGEGARMVRELFQMA----RSKKACILFIDEVDAIGGSRGSESAH--G 277
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--Y 123
+ V T++ I + QL G + + +++ N TL L+R GR+++ +
Sbjct: 278 DHEVQRTMLEIVN-----QLDGF---DARGNIKVLMATNRPDTLDPALLRPGRIDRKVEF 329
Query: 124 WAPTREDRIGVCK 136
P E RI + K
Sbjct: 330 GLPDLEGRIHIFK 342
>gi|88602329|ref|YP_502507.1| proteasome-activating nucleotidase [Methanospirillum hungatei JF-1]
gi|121731703|sp|Q2FQ56.1|PAN_METHJ RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
AltName: Full=Proteasomal ATPase; AltName:
Full=Proteasome regulatory ATPase; AltName:
Full=Proteasome regulatory particle
gi|88187791|gb|ABD40788.1| Proteasome-activating nucleotidase [Methanospirillum hungatei JF-1]
Length = 412
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 18/140 (12%)
Query: 11 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMV 69
EL GE A+L+R+ + D+ K+ + I+++DA GA R T T ++ V
Sbjct: 221 SELVQKYIGEGARLVRELF----DLAKEKAPSIVFIDEIDAIGASR---TEAMTSGDREV 273
Query: 70 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-- 127
TLM + L M E V II N L A L+R GR ++ P
Sbjct: 274 QRTLMQL--------LAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPD 325
Query: 128 REDRIGVCKGIFRNDNVADD 147
E R + K R N+++D
Sbjct: 326 TEGRYSILKVHTRCMNLSED 345
>gi|170591993|ref|XP_001900754.1| 26S proteasome regulatory chain 4 [Brugia malayi]
gi|158591906|gb|EDP30509.1| 26S proteasome regulatory chain 4, putative [Brugia malayi]
Length = 727
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 6 IMMSAGELESGNAGEPAKLIRQ-RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTV 64
I ++ +L N+G+ +KL+RQ +RE I ++ C + I+++DA GT +Y
Sbjct: 531 IRVTGADLIQKNSGDGSKLVRQYSFRELFRIARESVPCIIFIDEIDA-----VGTKRYDT 585
Query: 65 N---NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
+ V T++ + + QL G E V +I+ N L LIR GR+++
Sbjct: 586 TCGGEREVQRTMLELLN-----QLDGF---ESRGDVKVIMATNRIDVLDPALIRPGRIDR 637
Query: 122 FYWAP 126
P
Sbjct: 638 KIELP 642
>gi|256016691|emb|CAR63641.1| putative 26S proteasome regulatory chain 4 [Angiostrongylus
cantonensis]
Length = 435
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTV 64
I + +L N+G+ AKL+R+ ++ A K+ C + ++++DA G R +++
Sbjct: 243 IRATGADLVQKNSGDGAKLVRELFKMA----KESAPCIVFLDEIDAVGTKRFDTSSR--- 295
Query: 65 NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 124
Q V TL+ + + QL G ++ + V +I+ N +L + L+R GR+++
Sbjct: 296 GEQEVQRTLLELLN-----QLDGFESRGD---VKVILATNRIDSLDSALLRPGRIDRKIE 347
Query: 125 AP-----TREDRIGV 134
P TR+ G+
Sbjct: 348 LPKPDEKTRQKIFGI 362
>gi|124810171|ref|XP_001348790.1| ATP-dependent protease la, putative [Plasmodium falciparum 3D7]
gi|23497690|gb|AAN37229.1| ATP-dependent protease la, putative [Plasmodium falciparum 3D7]
Length = 706
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 5 PIMMSAG-ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
P + ++G E E G A+ IR+ ++ A KK C + I+++DA G+ + +
Sbjct: 314 PFLQASGSEFEEMFVGVGARRIRELFQAA----KKHAPCIVFIDEIDAV-----GSKRSS 364
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
+N V TL N V+L G E+N + +I N +L L+R GR++K
Sbjct: 365 RDNSAVRMTL-----NQLLVELDGF---EQNEGIVVICATNFPQSLDKALVRPGRLDKTI 416
Query: 124 WAP 126
P
Sbjct: 417 VVP 419
>gi|18977335|ref|NP_578692.1| cell division protein CDC48 [Pyrococcus furiosus DSM 3638]
gi|397651469|ref|YP_006492050.1| cell division protein CDC48 [Pyrococcus furiosus COM1]
gi|18893012|gb|AAL81087.1| cell division control protein 48, aaa family [Pyrococcus furiosus
DSM 3638]
gi|393189060|gb|AFN03758.1| cell division protein CDC48 [Pyrococcus furiosus COM1]
Length = 837
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + E+ S GE K IR+ +R+A ++ + I+++DA A GG
Sbjct: 605 NFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAPAIIFIDEIDAIAPARGGYEGER 660
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++++N L M +EN V +I N + L+R GR ++
Sbjct: 661 VTDRLINQLLTE------------MDGIQENSGVVVIGATNRPDIIDPALLRPGRFDRLI 708
Query: 124 W--APTREDRIGVCKGIFRNDNVADD 147
AP + R+ + K R +ADD
Sbjct: 709 LVPAPDEKARLEIFKVHTRGMPLADD 734
>gi|327403994|ref|YP_004344832.1| hypothetical protein Fluta_2008 [Fluviicola taffensis DSM 16823]
gi|327319502|gb|AEA43994.1| hypothetical protein Fluta_2008 [Fluviicola taffensis DSM 16823]
Length = 731
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 269 GCTDPTAENFDPTARSDDGSCQY 291
GCTDP A N+DPTA +DGSC +
Sbjct: 617 GCTDPLAVNYDPTAVLNDGSCVF 639
>gi|358058571|dbj|GAA95534.1| hypothetical protein E5Q_02189 [Mixia osmundae IAM 14324]
Length = 432
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MG+N + + + + GE ++L+R+ + A K+ + C + ++++DA GR +
Sbjct: 233 MGVNFLKVVSSAIVDKYIGESSRLVREMFAYA----KEHEPCIIFMDEIDAIGGRR--FS 286
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
+ T ++ + TLM + + Q+ G + R +I+ N TL L+R GR++
Sbjct: 287 EGTSADREIQRTLMELLN-----QMDGF---DSLGRTKVIMATNRPDTLDPALLRPGRLD 338
Query: 121 KFYWAP-----TREDRIGV-CKGIFRNDNVADDDIVKLVDTFPGQSI 161
+ P R + I + + + ++ + D +VKL + F G +
Sbjct: 339 RKIEIPLPNEIARTEIIKIHAQNVQKSGEIDYDPVVKLSEGFNGADL 385
>gi|225718662|gb|ACO15177.1| 26S protease regulatory subunit S10B [Caligus clemensi]
Length = 392
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 212 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 265
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK 136
+ G +V +I+ N TL L+R GR+++ P D R+ + K
Sbjct: 266 QMDGFDVLG--------QVKMIMATNRPDTLDPALLRPGRLDRKVEIPLPNDQARLEILK 317
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + +VKL D F G +
Sbjct: 318 IHAGPITKHGGIDYEAVVKLSDGFNGADL 346
>gi|167630439|ref|YP_001680938.1| reca protein [Heliobacterium modesticaldum Ice1]
gi|238687993|sp|B0TII6.1|RECA_HELMI RecName: Full=Protein RecA; AltName: Full=Recombinase A
gi|167593179|gb|ABZ84927.1| reca protein [Heliobacterium modesticaldum Ice1]
Length = 346
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 11 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
GE+ + G A+L+ Q R+ ++ K K CCL IN + G M G + T
Sbjct: 159 GEMGDAHVGLQARLMSQALRKLTGVVSKSKTCCLFINQIREKVGVMFGNPETT 211
>gi|169768094|ref|XP_001818518.1| hypothetical protein AOR_1_2826174 [Aspergillus oryzae RIB40]
gi|238485043|ref|XP_002373760.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus flavus NRRL3357]
gi|83766373|dbj|BAE56516.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220701810|gb|EED58148.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus flavus NRRL3357]
gi|391869899|gb|EIT79089.1| nuclear AAA ATPase [Aspergillus oryzae 3.042]
Length = 735
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+G+ I +SA + SG +GE K +R+ + EA K+ C + I+++DA + +
Sbjct: 229 LGVPFISISAPSIVSGMSGESEKALREYFEEA----KRIAPCLIFIDEIDAITPKR-ESA 283
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 284 QREMEKRIVAQLL-------TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 335
Query: 121 KFY--WAPTREDRIGVCKGIFRNDNVADD 147
K P+ R + + + R +ADD
Sbjct: 336 KEINMTVPSEPVREQILRALTRKMRLADD 364
>gi|125544662|gb|EAY90801.1| hypothetical protein OsI_12403 [Oryza sativa Indica Group]
Length = 200
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 248 AIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSC 289
+ + G++Y + + + + GC DP + FDP A DDGSC
Sbjct: 151 SCEMGSYYEEGGDRCKLDIVSGCMDPNSHMFDPLATVDDGSC 192
>gi|221059143|ref|XP_002260217.1| peptidase [Plasmodium knowlesi strain H]
gi|193810290|emb|CAQ41484.1| peptidase, putative [Plasmodium knowlesi strain H]
Length = 702
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I S E E G A+ IR+ ++ A KK C + I+++DA G+ + +
Sbjct: 312 IQASGSEFEEMFVGVGARRIRELFQAA----KKHAPCIVFIDEIDAV-----GSKRSNRD 362
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 125
N V TL N V+L G E+N + +I N +L L+R GR++K
Sbjct: 363 NSAVRMTL-----NQLLVELDGF---EQNEGIVVICATNFPQSLDKALVRPGRLDKTIVV 414
Query: 126 P 126
P
Sbjct: 415 P 415
>gi|390332227|ref|XP_001186944.2| PREDICTED: 26S protease regulatory subunit 10B-like isoform 1
[Strongylocentrotus purpuratus]
gi|390332229|ref|XP_003723449.1| PREDICTED: 26S protease regulatory subunit 10B-like isoform 2
[Strongylocentrotus purpuratus]
Length = 389
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFAYARD----HEPCVVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
G +V II+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 QMDGFDTLG--------KVKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ ++ + +VKL D F G +
Sbjct: 315 IHAAPITKHGDIDYEAVVKLSDGFNGADL 343
>gi|281344564|gb|EFB20148.1| hypothetical protein PANDA_019466 [Ailuropoda melanoleuca]
Length = 389
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESACLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHAGPITKHGEIDYEAIVKLSDGFNGADL 343
>gi|257387828|ref|YP_003177601.1| ATPase AAA [Halomicrobium mukohataei DSM 12286]
gi|257170135|gb|ACV47894.1| AAA family ATPase, CDC48 subfamily [Halomicrobium mukohataei DSM
12286]
Length = 740
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 27/182 (14%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + +L S GE K IRQ +R+A + + ++LD+ A GG T
Sbjct: 523 NFISVRGPQLLSKWVGESEKAIRQTFRKARQVAP----TVIFFDELDSLAPGRGGETGSN 578
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V+ ++VN L +L G+ EE V +I N + LIR GR ++
Sbjct: 579 VSERVVNQLL---------TELDGLEEMEE---VMVIGATNRPDMIDPALIRSGRFDRLV 626
Query: 124 WA--PTREDRIGVCKGIFRND-----NVADDDIVKLVDTFPGQSIDFFG---ALRARVYD 173
P E R + K I +D +V+ ++ ++ D + G ++ G A+ A D
Sbjct: 627 MVGEPGIEGREQILK-IHTDDTPLSPDVSLRELAEMTDGYVGSDLESIGREAAIEALRED 685
Query: 174 DE 175
D+
Sbjct: 686 DD 687
>gi|448485180|ref|ZP_21606488.1| ATPase AAA [Halorubrum arcis JCM 13916]
gi|445818525|gb|EMA68380.1| ATPase AAA [Halorubrum arcis JCM 13916]
Length = 751
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 23/165 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQ---RYREAADIIKKGKMCCLMINDLDAGAGRMGG 58
G+N I ++ EL GE K +R+ R R+AA I + D DA G G
Sbjct: 551 GVNYIQVAGPELLDRYVGESEKAVRELFDRARQAAPAIIFFDEIDAVATDRDAAGGDSSG 610
Query: 59 TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 118
++ V+ + L +DNP V ++ N L L+R GR
Sbjct: 611 VSERVVSQLLTE--LDRASDNPNLV---------------VLAATNRRDALDPALLRPGR 653
Query: 119 MEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+E P RE R + + R + DD D+ ++ D G S
Sbjct: 654 LETHVEVPEPDREARRKILEVHTRGKPLTDDVDLERVADETEGYS 698
>gi|421859398|ref|ZP_16291621.1| ATP-dependent Zn protease [Paenibacillus popilliae ATCC 14706]
gi|410831041|dbj|GAC42058.1| ATP-dependent Zn protease [Paenibacillus popilliae ATCC 14706]
Length = 501
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 20/152 (13%)
Query: 18 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 77
AG +L +Q + AA +K + + I+++D G+ G Q + +
Sbjct: 154 AGRVRELFKQARQRAAK--EKKQNAVIFIDEIDVIGGKREGGQQREYDQTL--------- 202
Query: 78 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC 135
N ++ G+Y + +PR+ ++ N L + L+R GR ++ P ++ R+ +
Sbjct: 203 -NQLLTEMDGLY-ADMSPRILVMAATNRKEILDSALLRPGRFDRHIQVDLPDKKGRLHIL 260
Query: 136 KGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 166
K +N +ADD D+ ++ D ++ F GA
Sbjct: 261 KLHAQNKPLADDVDLERIAD----ETFGFSGA 288
>gi|115453937|ref|NP_001050569.1| Os03g0586500 [Oryza sativa Japonica Group]
gi|50399944|gb|AAT76332.1| expressed protein [Oryza sativa Japonica Group]
gi|108709556|gb|ABF97351.1| expressed protein [Oryza sativa Japonica Group]
gi|113549040|dbj|BAF12483.1| Os03g0586500 [Oryza sativa Japonica Group]
gi|215695566|dbj|BAG90757.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765505|dbj|BAG87202.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 271
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 231 LADKYLSEAALGEA---NEDAI----QSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTAR 283
LAD+ E A A +E+ + + G++Y + + + + GC DP + FDP A
Sbjct: 198 LADELNREGACDRAIFPDENVVITSCEMGSYYEEGGDRCKLDIVSGCMDPNSHMFDPLAT 257
Query: 284 SDDGSC 289
DDGSC
Sbjct: 258 VDDGSC 263
>gi|390951337|ref|YP_006415096.1| AAA ATPase [Thiocystis violascens DSM 198]
gi|390427906|gb|AFL74971.1| AAA+ family ATPase [Thiocystis violascens DSM 198]
Length = 496
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
G+ + + G L GE K +R R + AD++ C L I++++ G G+
Sbjct: 288 FGVPLLRIDFGALYDKYIGETEKNLR-RALDTADLMAP---CVLWIDEIEKGIA--SGSE 341
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
V +++ L+ +A+ T RV ++ T ND S L LIR GR++
Sbjct: 342 DEGVGRRILGTLLIWMAERAT--------------RVFLVATANDISRLPPELIRKGRID 387
Query: 121 KFYWA--PTREDR 131
+ ++ PT E R
Sbjct: 388 ELFFVDLPTAEVR 400
>gi|159472777|ref|XP_001694521.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276745|gb|EDP02516.1| predicted protein [Chlamydomonas reinhardtii]
Length = 580
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + EL + GE + +RQ + A + C L ++LDA A R G
Sbjct: 372 GANFISIKGPELLNKYVGESERAVRQLFARA----RAAHPCVLFFDELDALAPRRG---- 423
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
T NNQ + N ++ G+ +++ + I+ N + L+R GR+EK
Sbjct: 424 -TDNNQAAERVV-----NQLLTEMDGVDSRQG---LFIVAATNRPDMIDPALLRPGRLEK 474
Query: 122 FYWAPT--REDRIGVCKGIFRNDNVADD 147
+ P +DR + K R + D
Sbjct: 475 VLYVPLPPPQDRAAILKAQVRKTPLEPD 502
>gi|432330935|ref|YP_007249078.1| 26S proteasome subunit P45 family [Methanoregula formicicum SMSP]
gi|432137644|gb|AGB02571.1| 26S proteasome subunit P45 family [Methanoregula formicicum SMSP]
Length = 436
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 12 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVN 70
EL GE A+L+R+ + D+ KK + I+++DA GA R T T ++ V
Sbjct: 247 ELVQKYIGEGARLVRELF----DLAKKKAPTIIFIDEIDAVGASR---TEANTSGDREVQ 299
Query: 71 ATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 130
TLM + L GM E V II N L L+R GR ++ P ++
Sbjct: 300 RTLMQL--------LAGMDGFENRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLPDE 351
Query: 131 --RIGVCK 136
R+ + K
Sbjct: 352 KGRLSILK 359
>gi|254412421|ref|ZP_05026195.1| ATPase, AAA family protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196180731|gb|EDX75721.1| ATPase, AAA family protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 532
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 27/179 (15%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTV 64
+ + G L G GE +RQ + + I C L I+++D G +G G +
Sbjct: 299 LRLDTGRLFGGIVGESESRVRQMIQISEAIAP----CVLWIDEIDKAFGNIGAGVDGDSG 354
Query: 65 NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 124
++ V TL+ + +E+ V I+ T N+ L A L+R GR ++ ++
Sbjct: 355 TSRRVFGTLIT-------------WMQEKTSPVFIVATANNVQILPAELLRKGRFDEIFF 401
Query: 125 --APT---REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 178
PT R+D V R + D D+ +L Q+ +F GA +V D + +
Sbjct: 402 LNLPTEAERKDIFKVHLQPLRPSRLRDFDLARLAR----QAKNFSGAEIEQVIIDAMHR 456
>gi|301787789|ref|XP_002929310.1| PREDICTED: 26S protease regulatory subunit 10B-like [Ailuropoda
melanoleuca]
Length = 403
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 223 GESACLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 276
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 277 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 328
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 329 IHAGPITKHGEIDYEAIVKLSDGFNGADL 357
>gi|400597658|gb|EJP65388.1| ATPase protein [Beauveria bassiana ARSEF 2860]
Length = 733
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 18/145 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I+++ EL + GE + +R+ + A + C L ++ D+ A R G
Sbjct: 522 ILINGPELLNKYVGESERAVRELFSRA----RSSTPCILFFDEFDSIAPRRDGGGASEAG 577
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FY 123
++VNA L +L G ++ V +I T N + ++R GR+ K F
Sbjct: 578 TRVVNALL---------TELDGARGRDG---VYVIGTTNRPDMIDDAMLRPGRLSKQLFL 625
Query: 124 WAPTREDRIGVCKGIFRNDNVADDD 148
PT +R+ + I+R +V D
Sbjct: 626 DLPTAAERVDILLAIYRTRHVGATD 650
>gi|376316133|emb|CCF99533.1| peptidase, M75 family, imelysin-like [uncultured Flavobacteriia
bacterium]
Length = 396
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 268 EGCTDPTAENFDPTARSDDGSCQY 291
+GCTDP A N+DP A+ ++ SC+Y
Sbjct: 30 KGCTDPLALNYDPNAKKENQSCEY 53
>gi|124485689|ref|YP_001030305.1| proteasome-activating nucleotidase [Methanocorpusculum labreanum Z]
gi|124363230|gb|ABN07038.1| 26S proteasome subunit P45 family [Methanocorpusculum labreanum Z]
Length = 429
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 21/171 (12%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTT 60
G+ + M+ EL GE A+L+R + A D+ +K + I+++DA G+ R T
Sbjct: 225 GVPFLRMAGSELVHKYIGEGAQLVRDLFEMARDLAEKNNGVVVFIDEIDAVGSMR---TN 281
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
T + V TLM + ++ G N+ + I+ N L A L+R GR +
Sbjct: 282 DGTSGSAEVQRTLMQL-----LAEMDGFNNR---GNIRIMAATNRPDMLDAALLRPGRFD 333
Query: 121 KFYW--APTREDRIGVCKGIFRNDNVAD-------DDIVKLVDTFPGQSID 162
+ AP R+ + K + A D++V++ + G I+
Sbjct: 334 RLIKIPAPDNAARMQIFKVHMKKMEAAGSLSGIDYDELVRMTEGLTGAEIE 384
>gi|255727749|ref|XP_002548800.1| protein AFG2 [Candida tropicalis MYA-3404]
gi|240133116|gb|EER32672.1| protein AFG2 [Candida tropicalis MYA-3404]
Length = 770
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G+N + + E+ + GE + IR+ +R+A + + +++DA AG G +
Sbjct: 564 GLNFLAVKGPEIFNKYVGESERTIREIFRKA----RAASPSIIFFDEIDAIAGDRDGDSS 619
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
T + ++ +L+N D EE V I+ N + + L+R GR+++
Sbjct: 620 TTAASNVL-TSLLNEID-----------GVEELKGVVIVGATNKPTEIDPALLRPGRLDR 667
Query: 122 FYWA--PTREDRIGVCKGIFRNDNVADDDI--VKLVDTFPGQS 160
+ P E R+ + + RN N+ D++ KL D G S
Sbjct: 668 HIYVAPPDYEARLQILQKCTRNFNLDKDEVALTKLADLTEGCS 710
>gi|126465619|ref|YP_001040728.1| ATPase AAA [Staphylothermus marinus F1]
gi|126014442|gb|ABN69820.1| AAA family ATPase, CDC48 subfamily [Staphylothermus marinus F1]
Length = 738
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + E+ S GE K IR+ +R+A + + +++DA A G
Sbjct: 522 GANFIAVRGPEILSKWVGESEKAIREIFRKA----RLYAPAVIFFDEIDAIAPARGYAFD 577
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
V ++V+ L ++ G+ N+ +N V +I N L L+R GR +K
Sbjct: 578 SRVTERIVSQLL---------TEMDGI-NRLDN--VVVIAATNRPDILDPALLRPGRFDK 625
Query: 122 FYWAPTRE--DRIGVCKGIFRNDNVADD----DIVKLVDTFPGQSIDFF---GALRARVY 172
+ P + RI + K RN +ADD +I +L + + G ++ A+RA
Sbjct: 626 LIYVPPPDLNGRIEILKIHTRNMPLADDVDLYEIARLTEGYSGADLEALVREAAMRALKE 685
Query: 173 DDEVRK 178
+ E+ K
Sbjct: 686 NIEINK 691
>gi|125586968|gb|EAZ27632.1| hypothetical protein OsJ_11576 [Oryza sativa Japonica Group]
Length = 271
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 231 LADKYLSEAALGEA---NEDAI----QSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTAR 283
LAD+ E A A +E+ + + G++Y + + + + GC DP + FDP A
Sbjct: 198 LADELNREGACDRAIFPDENVVITSCEMGSYYEEGGDRCKLDIVSGCMDPNSHMFDPLAT 257
Query: 284 SDDGSC 289
DDGSC
Sbjct: 258 VDDGSC 263
>gi|71987372|ref|NP_001022114.1| Protein RPT-4, isoform b [Caenorhabditis elegans]
gi|373218667|emb|CCD62358.1| Protein RPT-4, isoform b [Caenorhabditis elegans]
Length = 398
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 29/181 (16%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A++IR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 218 GESARMIREMFNYARD----HQPCIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 271
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
QL G + +V +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 272 -----QLDGF---DSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILK 323
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSID-------FFG--ALRARVYDDEVRKWISGV 183
I ++ + + +VKL D F + F A R V D++ K + V
Sbjct: 324 IHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKV 383
Query: 184 G 184
G
Sbjct: 384 G 384
>gi|82540809|ref|XP_724694.1| ATP-dependent metalloprotease FtsH [Plasmodium yoelii yoelii 17XNL]
gi|23479426|gb|EAA16259.1| ATP-dependent metalloprotease FtsH, putative [Plasmodium yoelii
yoelii]
Length = 703
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I S E E G A+ IR+ ++ A KK C + I+++DA G+ + +
Sbjct: 313 IQASGSEFEEMFVGVGARRIRELFQTA----KKHAPCIVFIDEIDAV-----GSKRSNRD 363
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 125
N V TL N V+L G E+N + +I N +L L+R GR++K
Sbjct: 364 NSAVRMTL-----NQLLVELDGF---EQNEGIVVICATNFPQSLDKALVRPGRLDKTIVV 415
Query: 126 P 126
P
Sbjct: 416 P 416
>gi|268534030|ref|XP_002632145.1| C. briggsae CBR-RPT-4 protein [Caenorhabditis briggsae]
Length = 398
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 29/181 (16%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A++IR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 218 GESARMIREMFNYARD----HQPCIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 271
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
QL G + +V +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 272 -----QLDGF---DSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILK 323
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSID-------FFG--ALRARVYDDEVRKWISGV 183
I ++ + + +VKL D F + F A R V D++ K + V
Sbjct: 324 IHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKV 383
Query: 184 G 184
G
Sbjct: 384 G 384
>gi|71987364|ref|NP_001022113.1| Protein RPT-4, isoform a [Caenorhabditis elegans]
gi|21264496|sp|O17071.2|PRS10_CAEEL RecName: Full=Probable 26S protease regulatory subunit 10B;
AltName: Full=26S proteasome AAA-ATPase subunit rpt-4;
AltName: Full=Proteasome regulatory particle ATPase-like
protein 4
gi|373218666|emb|CCD62357.1| Protein RPT-4, isoform a [Caenorhabditis elegans]
Length = 406
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 29/181 (16%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A++IR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 226 GESARMIREMFNYARD----HQPCIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 279
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
QL G + +V +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 280 -----QLDGF---DSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILK 331
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSID-------FFG--ALRARVYDDEVRKWISGV 183
I ++ + + +VKL D F + F A R V D++ K + V
Sbjct: 332 IHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKV 391
Query: 184 G 184
G
Sbjct: 392 G 392
>gi|126661984|ref|ZP_01732983.1| CHU large protein; uncharacterized [Flavobacteria bacterium BAL38]
gi|126625363|gb|EAZ96052.1| CHU large protein; uncharacterized [Flavobacteria bacterium BAL38]
Length = 1715
Score = 38.1 bits (87), Expect = 5.3, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 269 GCTDPTAENFDPTARSDDGSCQY 291
GCTDP + N++P A DDGSC Y
Sbjct: 280 GCTDPASTNYNPLATIDDGSCVY 302
>gi|403223916|dbj|BAM42046.1| metallopeptidase [Theileria orientalis strain Shintoku]
Length = 680
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 85/216 (39%), Gaps = 34/216 (15%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G+ I S E E G A+ IR ++ A I C + I++LDA + T
Sbjct: 255 GVPFIHASGSEFEEMFVGVGARRIRDLFKTAKTIAP----CIVFIDELDAVGSKRTSTDH 310
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
T M + N V+L G + K+E + ++ N +L L+R GR++K
Sbjct: 311 NT----------MRMTLNQLLVELDG-FAKQEG--IVVLCATNFPESLDPALVRPGRLDK 357
Query: 122 FYWAPT--REDRIGVCKGIFRNDNVADDDI---VKLVDTFPGQSIDFFGALR-------- 168
+ P + R+ + K ++ + + DI V T D F L
Sbjct: 358 TVYIPLPDLKGRLEILK-LYASKLILSSDIDLNVVAKRTVGMTGADLFNILNTAALKCSM 416
Query: 169 ---ARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPT 201
+ + V + V VG GKSLVN +E T
Sbjct: 417 QGLSSITAAAVEEAFDRVVVGLKGKSLVNERERRST 452
>gi|381159205|ref|ZP_09868438.1| AAA+ family ATPase [Thiorhodovibrio sp. 970]
gi|380880563|gb|EIC22654.1| AAA+ family ATPase [Thiorhodovibrio sp. 970]
Length = 490
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 34/205 (16%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
G+ + + G L + GE + +R+ + A + C L +++++ G GG++
Sbjct: 287 FGVPLLRLDFGALYNKYIGETERNLRESLKTAEVMAP----CVLWLDEIEKGLA--GGSS 340
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
+++ L +A+ V L + T ND L L+R GR +
Sbjct: 341 DEGTGQRIIGTLLTWMAERKAAVFL--------------VATSNDIKQLPPELVRKGRFD 386
Query: 121 KFYW-----APTRED--RIGVCKGIFRNDNVADDDIVKLVDTFPGQSID--FFGALRARV 171
+ ++ A R + RI + K D+ D + L D F G I+ AL A
Sbjct: 387 EIFFVDLPDAEVRREIFRIHLAKRNLNPDDFDLDQLAALSDGFSGAGIEQAVVSALYAAR 446
Query: 172 YDDEVRKWISGVGVGSIGKSLVNSK 196
DD SGV +I L ++
Sbjct: 447 ADDS-----SGVNTRAIAAELQRTQ 466
>gi|145531483|ref|XP_001451508.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124419163|emb|CAK84111.1| unnamed protein product [Paramecium tetraurelia]
Length = 393
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 19/159 (11%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTV 64
I +S EL GE A+++R+ + A ++ C + I+++D+ G RM G
Sbjct: 199 IRVSGSELVQKYIGEGARMVRELFVMA----RQHSPCLIFIDEVDSIGGARMEGERGGDS 254
Query: 65 NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF-- 122
Q L+N QL G E + II+ N L A L+R GR+++
Sbjct: 255 EVQRTMLELLN--------QLDGF---ESTQTIKIIMATNRIDILDAALLRPGRIDRKVE 303
Query: 123 YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ P + R+ + K + N+ D+ K+ + PG S
Sbjct: 304 FPNPGVDARLEILKIHSKKMNLMRGIDLRKIAEVMPGAS 342
>gi|440798212|gb|ELR19280.1| ATPase, AAA domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 882
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 25/166 (15%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + EL S GE + +R+ +R+A + C + +++DA A GG +
Sbjct: 674 GANFIAVKGPELFSKWVGESERAVREVFRKA----RAAAPCIIFFDEIDALAVHRGGGDE 729
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
+ +AD L M EE V ++ N + L+R GR+++
Sbjct: 730 GS----------SGVADRVVSQLLTEMNGIEELKNVTVVAATNRPDMIDKALLRPGRIDR 779
Query: 122 FYW-----APTREDRIGVCKGIFRNDNVADDDIV--KLVDTFPGQS 160
+ AP+RE RI IF N DDI KL + G S
Sbjct: 780 MLYVSPPDAPSRE-RI---FQIFLNKTPHADDIALPKLAELTEGYS 821
>gi|145532457|ref|XP_001451984.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124419661|emb|CAK84587.1| unnamed protein product [Paramecium tetraurelia]
Length = 393
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 19/159 (11%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTV 64
I +S EL GE A+++R+ + A ++ C + I+++D+ G RM G
Sbjct: 199 IRVSGSELVQKYIGEGARMVRELFVMA----RQHSPCLIFIDEVDSIGGARMEGERGGDS 254
Query: 65 NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF-- 122
Q L+N QL G E + II+ N L A L+R GR+++
Sbjct: 255 EVQRTMLELLN--------QLDGF---ESTQTIKIIMATNRIDILDAALLRPGRIDRKVE 303
Query: 123 YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ P + R+ + K + N+ D+ K+ + PG S
Sbjct: 304 FPNPGVDARLEILKIHSKKMNLMRGIDLRKIAEVMPGAS 342
>gi|341893757|gb|EGT49692.1| CBN-RPT-4 protein [Caenorhabditis brenneri]
Length = 398
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 29/181 (16%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A++IR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 218 GESARMIREMFNYARD----HQPCIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 271
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
QL G + +V +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 272 -----QLDGF---DSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILK 323
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSID-------FFG--ALRARVYDDEVRKWISGV 183
I ++ + + +VKL D F + F A R V D++ K + V
Sbjct: 324 IHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKV 383
Query: 184 G 184
G
Sbjct: 384 G 384
>gi|434385673|ref|YP_007096284.1| hypothetical protein Cha6605_1605 [Chamaesiphon minutus PCC 6605]
gi|428016663|gb|AFY92757.1| hypothetical protein Cha6605_1605 [Chamaesiphon minutus PCC 6605]
Length = 487
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 145 ADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKE---AAPT 201
A D L + G+S L +++ KWI G GVGSIGK+L N KE AP
Sbjct: 282 AQCDYTVLQNIVAGRSNPLNRNLAIQIHKPGQTKWIDG-GVGSIGKTLWNFKEPPGVAPA 340
Query: 202 FEQPRMTMEKLLEYGN 217
F+ +M + +LE GN
Sbjct: 341 FDSDQMKL--VLERGN 354
>gi|260799531|ref|XP_002594749.1| hypothetical protein BRAFLDRAFT_81216 [Branchiostoma floridae]
gi|229279985|gb|EEN50760.1| hypothetical protein BRAFLDRAFT_81216 [Branchiostoma floridae]
Length = 467
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 17/28 (60%)
Query: 265 PVPEGCTDPTAENFDPTARSDDGSCQYT 292
P GCT P A NFD A DDGSC YT
Sbjct: 413 PPRRGCTCPAAANFDIQATVDDGSCLYT 440
>gi|162312486|ref|XP_001713083.1| 19S proteasome regulatory subunit Rpt5 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|3024433|sp|O14126.1|PRS6A_SCHPO RecName: Full=26S protease regulatory subunit 6A
gi|6681372|dbj|BAA88693.1| regulatory subunit of 26S proteasome [Schizosaccharomyces pombe]
gi|159883985|emb|CAB16588.2| 19S proteasome regulatory subunit Rpt5 (predicted)
[Schizosaccharomyces pombe]
Length = 438
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTV 64
+ ++A +L G+ AKL+R +A + K+ + I++LDA G R
Sbjct: 248 LKLAAPQLVQMFIGDGAKLVR----DAFALAKEKSPAIIFIDELDAIGTKRFDSEK---A 300
Query: 65 NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF-- 122
++ V T++ + + QL G + + RV +I N TL L+R GR+++
Sbjct: 301 GDREVQRTMLELLN-----QLDGFSS---DDRVKVIAATNRVDTLDPALLRSGRLDRKLE 352
Query: 123 YWAPTREDRIGVCKGIFRNDNVADDDI 149
+ P E R+G+ + I DDDI
Sbjct: 353 FPLPNEEARVGILR-IHSRKMAIDDDI 378
>gi|434385842|ref|YP_007096453.1| hypothetical protein Cha6605_1805 [Chamaesiphon minutus PCC 6605]
gi|428016832|gb|AFY92926.1| hypothetical protein Cha6605_1805 [Chamaesiphon minutus PCC 6605]
Length = 486
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 167 LRARVYDDEVRKWISGVGVGSIGKSLVNSKE---AAPTFEQPRMTMEKLLEYGN 217
L +++ KWI G GVGSIGK+L N KE AP F+ +M + +LE GN
Sbjct: 304 LAIQIHKPGQTKWIDG-GVGSIGKTLWNFKEPPGVAPAFDSDQMKL--VLERGN 354
>gi|357627263|gb|EHJ77001.1| 26S proteasome regulatory ATPase subunit 10B [Danaus plexippus]
Length = 373
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 193 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 246
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + +V II+ N TL L+R GR+++ P + R+ + K
Sbjct: 247 -----QMDGF---DSLGQVKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILK 298
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + +VKL D F G +
Sbjct: 299 IHASPIAKHGEMDYEAVVKLSDAFNGADL 327
>gi|442805345|ref|YP_007373494.1| ATP-dependent zinc metalloprotease FtsH [Clostridium stercorarium
subsp. stercorarium DSM 8532]
gi|442741195|gb|AGC68884.1| ATP-dependent zinc metalloprotease FtsH [Clostridium stercorarium
subsp. stercorarium DSM 8532]
Length = 385
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 21/164 (12%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR--MGGT 59
G+N I + +S + ++Q +R+A ++ K C + I++ D R G+
Sbjct: 191 GVNFIATKGADFQSMFMSVGPRKVKQLFRKA----RRNKPCIVFIDEFDGIGERRNFAGS 246
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
NN+++ A L ++ G N++ V +I N +++L LIR GR
Sbjct: 247 GVDKENNRIITAMLN---------EMDGFENEDG---VLVIAATNSYASLDPALIRPGRF 294
Query: 120 EKFYWAPT--REDRIGVCKGIFRNDNV-ADDDIVKLVDTFPGQS 160
+ Y P +E RI + + R + + AD +L F G S
Sbjct: 295 DLKYTVPNPDQETRIKLIRMYTRKNRLSADIQTEELAKKFNGLS 338
>gi|448453007|ref|ZP_21593607.1| ATPase AAA [Halorubrum litoreum JCM 13561]
gi|445808094|gb|EMA58169.1| ATPase AAA [Halorubrum litoreum JCM 13561]
Length = 751
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 23/165 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQ---RYREAADIIKKGKMCCLMINDLDAGAGRMGG 58
G+N I ++ EL GE K +R+ R R+AA I + D DA G G
Sbjct: 551 GVNYIQVAGPELLDRYVGESEKAVRELFDRARQAAPAIIFFDEIDAVATDRDAAGGDGSG 610
Query: 59 TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 118
++ V+ + L +DNP V ++ N L L+R GR
Sbjct: 611 VSERVVSQLLTE--LDRASDNPNLV---------------VLAATNRRDALDPALLRPGR 653
Query: 119 MEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+E P RE R + + R + DD D+ ++ D G S
Sbjct: 654 LETHVEVPEPDREARRKILEVHTRGKPLTDDVDLERVADETEGYS 698
>gi|330790803|ref|XP_003283485.1| hypothetical protein DICPUDRAFT_44885 [Dictyostelium purpureum]
gi|325086595|gb|EGC39982.1| hypothetical protein DICPUDRAFT_44885 [Dictyostelium purpureum]
Length = 627
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 17/124 (13%)
Query: 3 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQY 62
++ I ++ E E G A+ +R ++ A +K C + I+++D+ +GG+
Sbjct: 80 VSFITINGSEFEEAFVGVGARRVRDLFQTA----RKNAPCIVFIDEIDS----VGGSRSK 131
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
VN A N V+L G +E V +I N TL A LIR GR ++
Sbjct: 132 RVNYHPSEAL------NQLLVELDGFTGRE---GVMVIAATNYQETLDAALIRSGRFDRI 182
Query: 123 YWAP 126
P
Sbjct: 183 IQVP 186
>gi|388501902|gb|AFK39017.1| unknown [Lotus japonicus]
Length = 276
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 202 FEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQS----GNFYGK 257
F+ P++ K +E+ N + E+ L + E A+ + I GN +
Sbjct: 182 FQVPKVLQNKPIEFFNEGLAEE-------LGKEGACEQAIFPDSNKVITKCAMLGNLTVE 234
Query: 258 AAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
+ ++ + EGCTDP++ ++P A DDG+C L
Sbjct: 235 GGDRCDLNLVEGCTDPSSHLYNPLANVDDGTCPLDL 270
>gi|448425588|ref|ZP_21582918.1| ATPase AAA [Halorubrum terrestre JCM 10247]
gi|445680659|gb|ELZ33102.1| ATPase AAA [Halorubrum terrestre JCM 10247]
Length = 751
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 23/165 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQ---RYREAADIIKKGKMCCLMINDLDAGAGRMGG 58
G+N I ++ EL GE K +R+ R R+AA I + D DA G G
Sbjct: 551 GVNYIQVAGPELLDRYVGESEKAVRELFDRARQAAPAIIFFDEIDAVATDRDAAGGDGSG 610
Query: 59 TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 118
++ V+ + L +DNP V ++ N L L+R GR
Sbjct: 611 VSERVVSQLLTE--LDRASDNPNLV---------------VLAATNRRDALDPALLRPGR 653
Query: 119 MEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+E P RE R + + R + DD D+ ++ D G S
Sbjct: 654 LETHVEVPEPDREARRKILEVHTRGKPLTDDVDLERVADETEGYS 698
>gi|359411497|ref|ZP_09203962.1| AAA family ATPase, CDC48 subfamily [Clostridium sp. DL-VIII]
gi|357170381|gb|EHI98555.1| AAA family ATPase, CDC48 subfamily [Clostridium sp. DL-VIII]
Length = 706
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 22/164 (13%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + EL S GE K +R+ +++A K+ C + +++D+ G + +
Sbjct: 516 NFISVKGPELLSKWVGESEKGLREIFKKA----KQAAPCVIFFDEIDSIVPARGRVSDGS 571
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR--MEK 121
+M+ C L + E+ V I+ N + L+R GR M
Sbjct: 572 ATERML------------CQMLTEIDGVEDLNGVLILGATNRLDIIDPALLRPGRFGMTL 619
Query: 122 FYWAPTREDRIGVCKGIFRNDNVADD-DIVKL---VDTFPGQSI 161
+ PT E+RI + K + +ADD D+++L D F G I
Sbjct: 620 EFKEPTLEERIEILKIHLKGKPIADDVDLIELAEATDGFTGADI 663
>gi|374611413|ref|ZP_09684199.1| AAA ATPase central domain protein [Mycobacterium tusciae JS617]
gi|373549123|gb|EHP75796.1| AAA ATPase central domain protein [Mycobacterium tusciae JS617]
Length = 522
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 23/143 (16%)
Query: 28 RYREAADIIKKGKMCCLMINDLD-AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
R REA ++ + C L I++++ A AG G + +M+ L
Sbjct: 314 RLREALEMASRVAPCVLWIDEIEKALAGGGSGGDATGITRRMIGQFLY------------ 361
Query: 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV 144
+ +E +V I+ T ND ++L L+R GR ++ ++ P EDR + + F
Sbjct: 362 --WLQESRAKVFIVATANDVTSLPPELLRKGRFDELFFVDLPDTEDRAEIVRMYFDTYLK 419
Query: 145 AD------DDIVKLVDTFPGQSI 161
D +++V L D F G I
Sbjct: 420 TDISPYLLEELVALSDGFAGADI 442
>gi|242398512|ref|YP_002993936.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
739]
gi|242264905|gb|ACS89587.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
739]
Length = 810
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 23/165 (13%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + E+ S GE K IR+ +R+A ++ + I+++DA A R G
Sbjct: 579 NFIGIRGPEVLSKWVGESEKNIREIFRKA----RQAAPTVIFIDEIDAIAPRRGSDVN-R 633
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++++N L M EEN V +I N L L+R GR ++
Sbjct: 634 VTDRLINQLLTE------------MDGIEENSGVVVIAATNRPDILDPALLRPGRFDRII 681
Query: 124 W--APTREDRIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 162
AP + R+ + K RN +A D ++ K + + G I+
Sbjct: 682 LVPAPDVKARLEIFKVHTRNVPLAKDVNLEELAKRTEGYTGADIE 726
>gi|448507739|ref|ZP_21615127.1| ATPase AAA [Halorubrum distributum JCM 9100]
gi|448518711|ref|ZP_21617718.1| ATPase AAA [Halorubrum distributum JCM 10118]
gi|445698075|gb|ELZ50127.1| ATPase AAA [Halorubrum distributum JCM 9100]
gi|445704644|gb|ELZ56554.1| ATPase AAA [Halorubrum distributum JCM 10118]
Length = 751
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 23/165 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQ---RYREAADIIKKGKMCCLMINDLDAGAGRMGG 58
G+N I ++ EL GE K +R+ R R+AA I + D DA G G
Sbjct: 551 GVNYIQVAGPELLDRYVGESEKAVRELFDRARQAAPAIIFFDEIDAVATDRDAAGGDGSG 610
Query: 59 TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 118
++ V+ + L +DNP V ++ N L L+R GR
Sbjct: 611 VSERVVSQLLTE--LDRASDNPNLV---------------VLAATNRRDALDPALLRPGR 653
Query: 119 MEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+E P RE R + + R + DD D+ ++ D G S
Sbjct: 654 LETHVEVPEPDREARRKILEVHTRGKPLTDDVDLERVADETEGYS 698
>gi|390961725|ref|YP_006425559.1| cell division protein containing CDC48 domain 1 [Thermococcus sp.
CL1]
gi|390520033|gb|AFL95765.1| cell division protein containing CDC48 domain 1 [Thermococcus sp.
CL1]
Length = 795
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + E+ S GE K IR+ +R+A ++ + I+++DA A R G T
Sbjct: 577 NFIAIKGPEVLSKWVGESEKNIREIFRKA----RQAAPTVIFIDEIDAIAPRRG-TDVNR 631
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++++N L M +EN V +I N + L+R GR ++
Sbjct: 632 VTDRLINQLLTE------------MDGIQENSGVVVIGATNRPDIIDPALLRPGRFDRLI 679
Query: 124 W--APTREDRIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 162
AP + R+ + K RN +A+D ++ K + + G I+
Sbjct: 680 LVPAPDEKARLEIFKVHTRNVPLAEDVKLEELAKRTEGYTGADIE 724
>gi|28175479|gb|AAH43044.1| Psmc6 protein [Mus musculus]
Length = 390
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA G ++ T ++ + TLM + +
Sbjct: 210 GESARLIREMFNYARD----HQPCIIFMDEIDAIGG--PRFSEGTSADREIQRTLMELLN 263
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 264 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 315
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 316 IHAGPITKHGEIDYEAIVKLSDGFNGADL 344
>gi|341896869|gb|EGT52804.1| hypothetical protein CAEBREN_04435 [Caenorhabditis brenneri]
Length = 268
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 20/144 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A++IR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 88 GESARMIREMFNYARD----HQPCIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 141
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 136
QL G + +V +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 142 -----QLDGF---DSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILK 193
Query: 137 ----GIFRNDNVADDDIVKLVDTF 156
I ++ + + +VKL D F
Sbjct: 194 IHSNKITKHGEIDFEAVVKLSDGF 217
>gi|308470578|ref|XP_003097522.1| CRE-RPT-4 protein [Caenorhabditis remanei]
gi|308240039|gb|EFO83991.1| CRE-RPT-4 protein [Caenorhabditis remanei]
Length = 492
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 20/144 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A++IR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 312 GESARMIREMFNYARD----HQPCIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 365
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
QL G + +V +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 366 -----QLDGF---DSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILK 417
Query: 137 ----GIFRNDNVADDDIVKLVDTF 156
I ++ + + +VKL D F
Sbjct: 418 IHSNKITKHGEIDFEAVVKLSDGF 441
>gi|428215715|ref|YP_007088859.1| AAA ATPase [Oscillatoria acuminata PCC 6304]
gi|428004096|gb|AFY84939.1| AAA+ family ATPase [Oscillatoria acuminata PCC 6304]
Length = 544
Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 20/134 (14%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM-GGTTQYTV 64
+ + G L G GE R R+ + + C L I+++D G + GGT +
Sbjct: 311 LRLDTGRLFGGIVGES----ESRLRQMIQLAEAMSPCVLWIDEIDKAFGNISGGTDGDSG 366
Query: 65 NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 124
++ V TL+ + +E+ V I+ T N+ L A L+R GR ++ ++
Sbjct: 367 TSRRVFGTLIT-------------WMQEKTAPVFIVATANNVRILPAELLRKGRFDEIFF 413
Query: 125 --APTREDRIGVCK 136
PT +R + K
Sbjct: 414 LNLPTETERREIFK 427
>gi|357979439|emb|CCE67060.1| cell division protein FtsH [Candidatus Mycoplasma haemominutum
'Birmingham 1']
Length = 757
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 27 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86
+R RE D KK C + I+++DA AG+ GG N Q +N L ++
Sbjct: 371 KRVRELFDKAKKLSPCIIFIDEIDALAGKRGGKFNIQGNEQTINQLLS---------EMD 421
Query: 87 GMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND 142
G N + II+ G N ++ ++R GR ++ P +R + K +N
Sbjct: 422 GF-----NTQAGIIIIGATNRLESIDEAVLRPGRFDRHIQINLPDIAERREILKLHAKNK 476
Query: 143 NVADD-DIVKLVDTFPGQS 160
N+++ D+ ++ PG S
Sbjct: 477 NLSNKIDLEEVARKTPGFS 495
>gi|156087018|ref|XP_001610916.1| 26S protease regulatory subunit 7 [Babesia bovis T2Bo]
gi|154798169|gb|EDO07348.1| 26S protease regulatory subunit 7, putative [Babesia bovis]
Length = 425
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 65
I + EL GE A+L+R+ ++ A + K C L I+++DA G G + +
Sbjct: 230 ICVIGSELVQKYVGEGARLVRELFQMA----RSKKACILFIDEVDAIGGSRGDESAH--G 283
Query: 66 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
+ V T++ I + QL G ++ N + +I+ N TL L+R GR+++
Sbjct: 284 DHEVQRTMLEIVN-----QLDG-FDARGN--IKVIMATNRPDTLDPALLRPGRIDR 331
>gi|226226799|ref|YP_002760905.1| ATP-dependent protease FtsH [Gemmatimonas aurantiaca T-27]
gi|226089990|dbj|BAH38435.1| ATP-dependent protease FtsH [Gemmatimonas aurantiaca T-27]
Length = 658
Score = 37.0 bits (84), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 26/138 (18%)
Query: 34 DIIKKGKM---CCLMINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 85
D+ ++GK C + I+++DA GAG GG + Q +N L V++
Sbjct: 255 DLFEQGKAHAPCIIFIDEIDAVGRHRGAGLGGGHDE---REQTLNQLL---------VEM 302
Query: 86 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDN 143
G E N V +I N L L+R GR ++ AP R G+ K RN
Sbjct: 303 DGF---ESNDGVILIAATNRPDVLDPALLRPGRFDRQIVVDAPDLRGREGILKVHLRNKP 359
Query: 144 VADD-DIVKLVDTFPGQS 160
+ADD + L PG S
Sbjct: 360 IADDVSVTALARGTPGMS 377
>gi|195997743|ref|XP_002108740.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190589516|gb|EDV29538.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 387
Score = 37.0 bits (84), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 207 GESARLIREMFAYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 260
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + +V II+ N TL L+R GR+++ P + R+ + K
Sbjct: 261 -----QMDGF---DALGQVKIIMATNRPDTLDPALLRPGRLDRKIQIALPNEQARLEILK 312
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + +VKL + F G +
Sbjct: 313 IHASPITKHGEIDYEAVVKLAEEFNGADL 341
>gi|348681221|gb|EGZ21037.1| hypothetical protein PHYSODRAFT_557274 [Phytophthora sojae]
Length = 433
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 18/166 (10%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM--CCLMINDLDA-GAGRMGGTTQY 62
+ ++A +L G+ AKL+R + A + K + I++LDA G R GG
Sbjct: 236 LKLAAPQLVQMFIGDGAKLVRDAFELAKEKCKDENRGGAIIFIDELDAIGTKRFGGEQSG 295
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
Q L+N QL G N N ++ +I N L L+R GR+++
Sbjct: 296 DREVQRTMLELLN--------QLDGFTN---NTKIKVIAATNRPDVLDPALLRSGRLDRK 344
Query: 123 YW--APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGA 166
PT E R + + R NV +D D + DF GA
Sbjct: 345 IELPHPTEEARARILQIHSRKMNVDTEDTN--FDELARSTDDFNGA 388
>gi|227830675|ref|YP_002832455.1| AAA ATPase [Sulfolobus islandicus L.S.2.15]
gi|229579582|ref|YP_002837981.1| AAA ATPase [Sulfolobus islandicus Y.G.57.14]
gi|284998202|ref|YP_003419969.1| ATPase AAA [Sulfolobus islandicus L.D.8.5]
gi|227457123|gb|ACP35810.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
gi|228010297|gb|ACP46059.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
Y.G.57.14]
gi|284446097|gb|ADB87599.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
Length = 759
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 28/184 (15%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + E+ S GE K +R+ +R A ++ C + +++D+ A G T
Sbjct: 525 GANFIAVRGPEILSKWVGESEKAVREIFRRA----RQTAPCVIFFDEIDSIAPMRGFTHD 580
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
V ++VN L M + RV +I N L L+R GR ++
Sbjct: 581 SGVTERIVNQLLSE------------MDGIQSLNRVVVIAATNRPDILDPALLRPGRFDR 628
Query: 122 FYWAPTRED--RIGVCKGIFR----NDNVADDDIVKLVDTFPGQSIDFFG------ALRA 169
+ P ++ RI + K + + +V +++ K ++ + G I+ LR
Sbjct: 629 LIYVPPPDEKARIEILKIYTKTLPIDSSVNLEELAKKLEGYTGADIEALARETTMKVLRQ 688
Query: 170 RVYD 173
+ Y+
Sbjct: 689 KYYE 692
>gi|229581753|ref|YP_002840152.1| AAA ATPase [Sulfolobus islandicus Y.N.15.51]
gi|228012469|gb|ACP48230.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
Y.N.15.51]
Length = 759
Score = 37.0 bits (84), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 28/184 (15%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + E+ S GE K +R+ +R A ++ C + +++D+ A G T
Sbjct: 525 GANFIAVRGPEILSKWVGESEKAVREIFRRA----RQTAPCVIFFDEIDSIAPMRGFTHD 580
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
V ++VN L M + RV +I N L L+R GR ++
Sbjct: 581 SGVTERIVNQLLSE------------MDGIQSLNRVVVIAATNRPDILDPALLRPGRFDR 628
Query: 122 FYWAPTRED--RIGVCKGIFR----NDNVADDDIVKLVDTFPGQSIDFFG------ALRA 169
+ P ++ RI + K + + +V +++ K ++ + G I+ LR
Sbjct: 629 LIYVPPPDEKARIEILKIYTKTLPIDSSVNLEELAKKLEGYTGADIEALARETTMKVLRQ 688
Query: 170 RVYD 173
+ Y+
Sbjct: 689 KYYE 692
>gi|56750555|ref|YP_171256.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
gi|56685514|dbj|BAD78736.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
Length = 632
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 26/153 (16%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-----GAGRM 56
G+ MS E G A +R +R+A K+ C + I+++DA GAG
Sbjct: 226 GVPFFSMSGSEFVEMFVGVGASRVRDLFRKA----KENSPCIVFIDEIDAVGRQRGAGIG 281
Query: 57 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 116
GG + Q +N L M EEN V II N L + L+R
Sbjct: 282 GGNDE---REQTLNQLLTE------------MDGFEENSGVIIIAATNRPDVLDSALLRP 326
Query: 117 GRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 147
GR ++ P+ R+G+ + RN +A++
Sbjct: 327 GRFDRQITVDLPSYNGRLGILQVHARNKKLAEE 359
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,785,147,202
Number of Sequences: 23463169
Number of extensions: 204003027
Number of successful extensions: 453044
Number of sequences better than 100.0: 665
Number of HSP's better than 100.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 351
Number of HSP's that attempted gapping in prelim test: 452356
Number of HSP's gapped (non-prelim): 711
length of query: 293
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 152
effective length of database: 9,050,888,538
effective search space: 1375735057776
effective search space used: 1375735057776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)