BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022739
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Larrea tridentata GN=RCA1 PE=1 SV=1
Length = 476
Score = 541 bits (1394), Expect = e-153, Method: Compositional matrix adjust.
Identities = 261/295 (88%), Positives = 274/295 (92%), Gaps = 2/295 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVRKW+
Sbjct: 302 KFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWV 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S VGV +IGK LVNSKE P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAA
Sbjct: 362 SEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAA 421
Query: 241 LGEANEDAIQSGNFY-GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN DAI+ G FY G+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct: 422 LGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2
Length = 466
Score = 534 bits (1375), Expect = e-151, Method: Compositional matrix adjust.
Identities = 251/294 (85%), Positives = 275/294 (93%), Gaps = 1/294 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 173 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 232
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 233 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 292
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 293 KFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWV 352
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAA
Sbjct: 353 SDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAA 412
Query: 241 LGEANEDAIQSGNFYGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN DA+++G+FYG+ AQQ N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct: 413 LGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYTF 466
>sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Arabidopsis thaliana GN=RCA PE=1 SV=2
Length = 474
Score = 525 bits (1352), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/293 (84%), Positives = 263/293 (89%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK++
Sbjct: 302 KFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFV 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GV IGK LVNS+E P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AA
Sbjct: 362 ESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAA 421
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN DAI G FYGK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct: 422 LGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1
Length = 464
Score = 524 bits (1350), Expect = e-148, Method: Compositional matrix adjust.
Identities = 242/293 (82%), Positives = 271/293 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 172 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTT 231
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRME
Sbjct: 232 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRME 291
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 292 KFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWV 351
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AA
Sbjct: 352 GSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAA 411
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DA+++G+FYGK AQQ +PVPEGCTD A+N+DPTARSDDGSC YT
Sbjct: 412 LGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Spinacia oleracea PE=1 SV=2
Length = 472
Score = 509 bits (1312), Expect = e-144, Method: Compositional matrix adjust.
Identities = 236/293 (80%), Positives = 264/293 (90%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTT
Sbjct: 180 LGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTT 239
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 240 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRME 299
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIF+ D V + +VKLVD FPGQSIDFFGALRARVY DEVRKW+
Sbjct: 300 KFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWV 359
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+ VGV ++GK LVNSK+ P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AA
Sbjct: 360 NSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAA 419
Query: 241 LGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 293
LG+AN+DAI G F+GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct: 420 LGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472
>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Malus domestica GN=RCA PE=2 SV=1
Length = 437
Score = 484 bits (1246), Expect = e-136, Method: Compositional matrix adjust.
Identities = 231/256 (90%), Positives = 243/256 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
M I+PIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMC L INDLDAGAGR+GGTT
Sbjct: 182 MRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 302 KFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GVGV SIGK LVNSKE PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAA
Sbjct: 362 TGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAA 421
Query: 241 LGEANEDAIQSGNFYG 256
LG+AN DA+ +G FYG
Sbjct: 422 LGDANSDAMNTGTFYG 437
>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1
Length = 435
Score = 480 bits (1236), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/254 (89%), Positives = 242/254 (95%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 241
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 302 KFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWV 361
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S VGV +IGK LVNSKE PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAA
Sbjct: 362 SEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAA 421
Query: 241 LGEANEDAIQSGNF 254
LG+AN+DAI+ G F
Sbjct: 422 LGDANQDAIKRGTF 435
>sp|O98997|RCA_VIGRR Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Vigna radiata var. radiata GN=RCA PE=2 SV=2
Length = 439
Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust.
Identities = 222/255 (87%), Positives = 240/255 (94%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDLDAGAGR+GGTT
Sbjct: 184 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTT 243
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 244 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRME 303
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 304 KFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWI 363
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV + GK LVNSKE PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAA
Sbjct: 364 SGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAA 423
Query: 241 LGEANEDAIQSGNFY 255
LG ANEDAI+SG+F+
Sbjct: 424 LGNANEDAIKSGSFF 438
>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1
Length = 425
Score = 469 bits (1206), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/257 (86%), Positives = 241/257 (93%), Gaps = 1/257 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGN GEPAKLIRQRYREAADII KGKMCCL INDLDAGAGRMGGTT
Sbjct: 170 MGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTT 228
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 229 QYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 288
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 289 KFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWV 348
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
+GV +I K LVNS+E PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAA
Sbjct: 349 GEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAA 408
Query: 241 LGEANEDAIQSGNFYGK 257
LG+AN+DA+++G FYGK
Sbjct: 409 LGQANDDAMKTGAFYGK 425
>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Zea mays GN=RCA1 PE=2 SV=3
Length = 433
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 217/255 (85%), Positives = 239/255 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKM CL INDLDAGAGRMGGTT
Sbjct: 178 MGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTT 237
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 238 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 297
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+
Sbjct: 298 KFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWV 357
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
S GV +I + LVNSKE PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAA
Sbjct: 358 SETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAA 417
Query: 241 LGEANEDAIQSGNFY 255
LGEANEDA+++G+F+
Sbjct: 418 LGEANEDAMKTGSFF 432
>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1
Length = 441
Score = 465 bits (1196), Expect = e-130, Method: Compositional matrix adjust.
Identities = 220/255 (86%), Positives = 238/255 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKMC L INDLDAGAGR+GGTT
Sbjct: 186 MGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTT 245
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 246 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRME 305
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR D V + DIV+LVD PGQSIDFFGALRARVYDDEVRKWI
Sbjct: 306 KFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWI 365
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SGVGV S+GK LVNSKE PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAA
Sbjct: 366 SGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAA 425
Query: 241 LGEANEDAIQSGNFY 255
LG ANEDAI+SG+F+
Sbjct: 426 LGNANEDAIKSGSFF 440
>sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Nicotiana tabacum PE=1 SV=1
Length = 442
Score = 464 bits (1193), Expect = e-130, Method: Compositional matrix adjust.
Identities = 218/255 (85%), Positives = 235/255 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTT
Sbjct: 186 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTT 245
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 246 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 305
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVC GIFR DNV +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 306 KFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWV 365
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SG G+ IG L+NS + PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAA
Sbjct: 366 SGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAA 425
Query: 241 LGEANEDAIQSGNFY 255
LG+AN DAI +G+F+
Sbjct: 426 LGDANADAINNGSFF 440
>sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1
Length = 439
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 216/254 (85%), Positives = 236/254 (92%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG +CCL INDLDAGAGRMGGTT
Sbjct: 186 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTT 245
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 246 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 305
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 306 KFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWV 365
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SG G+ +IG L+NS + PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAA
Sbjct: 366 SGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAA 425
Query: 241 LGEANEDAIQSGNF 254
LG+AN DAI +GNF
Sbjct: 426 LGDANADAINTGNF 439
>sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Solanum pennellii PE=2 SV=1
Length = 459
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 215/252 (85%), Positives = 235/252 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTT
Sbjct: 181 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTT 240
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 241 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 300
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVRKW+
Sbjct: 301 KFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWV 360
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 240
SG G+ IG+ L+NS++ PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAA
Sbjct: 361 SGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAA 420
Query: 241 LGEANEDAIQSG 252
LG+AN DAI +G
Sbjct: 421 LGDANADAINTG 432
>sp|Q01587|RCA_CUCSA Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Cucumis sativus PE=2 SV=1
Length = 413
Score = 434 bits (1117), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/232 (88%), Positives = 218/232 (93%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGR+GGTT
Sbjct: 179 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTT 238
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+
Sbjct: 239 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMD 298
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
KFYWAPTREDRIG+C GIFR D V +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 299 KFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWA 358
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLA 232
GVGV IG++LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct: 359 VGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKLV 410
>sp|P23489|RCA_CHLRE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Chlamydomonas reinhardtii PE=2 SV=1
Length = 408
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/243 (74%), Positives = 203/243 (83%), Gaps = 5/243 (2%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG+MC L INDLDAGAGRMG TT
Sbjct: 155 LGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTT 214
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
QYTVNNQMVNATLMNIADNPT VQLPG+Y EE PRVPI+ TGNDFSTLYAPLIRDGRME
Sbjct: 215 QYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRME 274
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 180
K+YW PTREDRIGVC GIF+ DNV ++ LVDTFPGQSIDFFGALRARVYDD VR+WI
Sbjct: 275 KYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWI 334
Query: 181 SGVGVGSIGKSLVNSKEAAPTFEQPRMTME--KLLEYGNMIVQEQENVKRVQLADKYLSE 238
+ GV IG+ LVN+++ P+++M+ L++YG +V EQENVKRVQLAD YLS
Sbjct: 335 TDTGVDKIGQQLVNARQKVAM---PKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSG 391
Query: 239 AAL 241
A L
Sbjct: 392 AEL 394
>sp|P58555|RCA_NOSS1 Ribulose bisphosphate carboxylase/oxygenase activase OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=rca PE=3 SV=1
Length = 414
Score = 301 bits (770), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 145/236 (61%), Positives = 179/236 (75%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MGI ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R+D++G+ GIF D ++ +I +LVDTFP QSIDFF ALR+R+YD ++R +
Sbjct: 174 EKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I VG I +VNS EA P F++P ++ L+E GN+++ EQ+ V QL D+Y
Sbjct: 234 IHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>sp|Q06721|RCA_ANASC Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena
sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1
Length = 415
Score = 300 bits (768), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 141/236 (59%), Positives = 179/236 (75%), Gaps = 1/236 (0%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 59
MG+ ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR
Sbjct: 54 MGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEG 113
Query: 60 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119
TQYTVN Q+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 114 TQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRM 173
Query: 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 179
EKFYW P R++++G+ GIF D ++ D+ KLVD+FP QSIDFF ALR+R+YD+++R +
Sbjct: 174 EKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDF 233
Query: 180 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 235
I VG ++ +VNS E P F++P T+ L+E N +V EQ+ ++ QL D+Y
Sbjct: 234 IHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289
>sp|P85086|RCA_ARAHY Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1
Length = 140
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 81/168 (48%), Gaps = 85/168 (50%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPAK MCCL INDLDAGAGR
Sbjct: 58 MGINPIMMSAGELESGNAGEPAK-----------------MCCLFINDLDAGAGR----- 95
Query: 61 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 120
VPIIVTGNDFSTLYAPLI
Sbjct: 96 ------------------------------------VPIIVTGNDFSTLYAPLI------ 113
Query: 121 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR 168
RIGVC GIFR LVDTFPGQSIDFFGALR
Sbjct: 114 ----------RIGVCTGIFR-----------LVDTFPGQSIDFFGALR 140
>sp|P85111|RCA_VITSX Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1
Length = 62
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 40/60 (66%), Gaps = 17/60 (28%)
Query: 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 60
MGINPIMMSAGELESGNAGEPA KMCCL INDLDAGAGR+G T
Sbjct: 16 MGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVCT 58
>sp|P84562|RCA_POPEU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Populus euphratica PE=1 SV=1
Length = 32
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 29/60 (48%), Gaps = 28/60 (46%)
Query: 152 LVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEK 211
LVDTFPGQSIDFFGALR E PTFEQP MT+EK
Sbjct: 1 LVDTFPGQSIDFFGALR----------------------------EGPPTFEQPAMTIEK 32
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 19/160 (11%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + EL S GE K +R+ +R+A + C + +++D+ A R GG
Sbjct: 516 NFISVKGPELLSKWVGESEKHVREMFRKARQVAP----CVIFFDEIDSLAPRRGGIGDSH 571
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 123
V ++V+ L +L G+ EE V +I N + L+R GR+E+
Sbjct: 572 VTERVVSQLL---------TELDGL---EELKDVVVIAATNRPDMIDPALLRPGRLERHI 619
Query: 124 WAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ P ++ R+ + K R +ADD +I +L + G S
Sbjct: 620 YIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYS 659
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 44.7 bits (104), Expect = 9e-04, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 22/167 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + E+ S GE K IR+ +R+A ++ C + +++DA A + G
Sbjct: 511 GANFISVKGPEIFSKWVGESEKAIREIFRKA----RQSAPCIIFFDEIDAIAPKRGRDLS 566
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
V +++VN L +L GM EE V +I N + L+R GR+++
Sbjct: 567 SAVTDKVVNQLL---------TELDGM---EEPKDVVVIAATNRPDIIDPALLRPGRLDR 614
Query: 122 FYWAPTRED--RIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 162
P ++ R+ + K R+ N+A+D ++ K + + G I+
Sbjct: 615 VILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTEGYTGADIE 661
>sp|Q2KIW6|PRS10_BOVIN 26S protease regulatory subunit 10B OS=Bos taurus GN=PSMC6 PE=2
SV=1
Length = 389
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHAGPITKHGEIDYEAIVKLSDGFNGADL 343
>sp|P62335|PRS10_SPETR 26S protease regulatory subunit 10B OS=Spermophilus
tridecemlineatus GN=PSMC6 PE=2 SV=1
Length = 389
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHAGPITKHGEIDYEAIVKLSDGFNGADL 343
>sp|P62334|PRS10_MOUSE 26S protease regulatory subunit 10B OS=Mus musculus GN=Psmc6 PE=1
SV=1
Length = 389
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHAGPITKHGEIDYEAIVKLSDGFNGADL 343
>sp|P62333|PRS10_HUMAN 26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1
SV=1
Length = 389
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A+LIR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 209 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 262
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
Q+ G + RV +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 263 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 314
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSI 161
I ++ + + IVKL D F G +
Sbjct: 315 IHAGPITKHGEIDYEAIVKLSDGFNGADL 343
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 11 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMV 69
EL GE A+L+R+ + D+ KK + I+++DA GA R T T ++ V
Sbjct: 246 SELVQKYIGEGARLVRELF----DLAKKKAPTIIFIDEIDAVGASR---TEANTSGDREV 298
Query: 70 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-- 127
TLM + L GM E V II N L L+R GR ++ P
Sbjct: 299 QRTLMQL--------LAGMDGFETRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLPD 350
Query: 128 REDRIGVCK 136
E R+ + K
Sbjct: 351 EEGRLSILK 359
>sp|Q2FQ56|PAN_METHJ Proteasome-activating nucleotidase OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=pan PE=3 SV=1
Length = 412
Score = 38.5 bits (88), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 18/140 (12%)
Query: 11 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMV 69
EL GE A+L+R+ + D+ K+ + I+++DA GA R T T ++ V
Sbjct: 221 SELVQKYIGEGARLVRELF----DLAKEKAPSIVFIDEIDAIGASR---TEAMTSGDREV 273
Query: 70 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-- 127
TLM + L M E V II N L A L+R GR ++ P
Sbjct: 274 QRTLMQL--------LAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPD 325
Query: 128 REDRIGVCKGIFRNDNVADD 147
E R + K R N+++D
Sbjct: 326 TEGRYSILKVHTRCMNLSED 345
>sp|B0TII6|RECA_HELMI Protein RecA OS=Heliobacterium modesticaldum (strain ATCC 51547 /
Ice1) GN=recA PE=3 SV=1
Length = 346
Score = 38.1 bits (87), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 11 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
GE+ + G A+L+ Q R+ ++ K K CCL IN + G M G + T
Sbjct: 159 GEMGDAHVGLQARLMSQALRKLTGVVSKSKTCCLFINQIREKVGVMFGNPETT 211
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 38.1 bits (87), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 29/181 (16%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 78
GE A++IR+ + A D + C + ++++DA GR ++ T ++ + TLM + +
Sbjct: 226 GESARMIREMFNYARD----HQPCIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 279
Query: 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 136
QL G + +V +I+ N TL L+R GR+++ P + R+ + K
Sbjct: 280 -----QLDGF---DSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILK 331
Query: 137 ----GIFRNDNVADDDIVKLVDTFPGQSID-------FFG--ALRARVYDDEVRKWISGV 183
I ++ + + +VKL D F + F A R V D++ K + V
Sbjct: 332 IHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKV 391
Query: 184 G 184
G
Sbjct: 392 G 392
>sp|O14126|PRS6A_SCHPO 26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tbp1 PE=3 SV=1
Length = 438
Score = 37.7 bits (86), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTV 64
+ ++A +L G+ AKL+R +A + K+ + I++LDA G R
Sbjct: 248 LKLAAPQLVQMFIGDGAKLVR----DAFALAKEKSPAIIFIDELDAIGTKRFDSEK---A 300
Query: 65 NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF-- 122
++ V T++ + + QL G + + RV +I N TL L+R GR+++
Sbjct: 301 GDREVQRTMLELLN-----QLDGFSS---DDRVKVIAATNRVDTLDPALLRSGRLDRKLE 352
Query: 123 YWAPTREDRIGVCKGIFRNDNVADDDI 149
+ P E R+G+ + I DDDI
Sbjct: 353 FPLPNEEARVGILR-IHSRKMAIDDDI 378
>sp|B8D065|FTSH_HALOH ATP-dependent zinc metalloprotease FtsH OS=Halothermothrix orenii
(strain H 168 / OCM 544 / DSM 9562) GN=ftsH PE=3 SV=1
Length = 630
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 23/139 (16%)
Query: 28 RYREAADIIKKGKMCCLMINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADNPTC 82
R R+ + KK C + I++LDA GAG GG + Q +N L
Sbjct: 243 RVRDLFEQGKKNAPCIIFIDELDAVGRQRGAGLGGGHDE---REQTLNQLL--------- 290
Query: 83 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFR 140
V++ G E N + ++ N L L+R GR ++ P + R+G+ K R
Sbjct: 291 VEMDGF---EPNEGIIVMAATNRPDVLDPALLRPGRFDRQVVVDKPDVKGRMGILKIHLR 347
Query: 141 NDNVADD-DIVKLVDTFPG 158
N VADD D+ L PG
Sbjct: 348 NKPVADDVDVEVLAKRTPG 366
>sp|Q07590|SAV_SULAC Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=sav PE=3
SV=2
Length = 780
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 22/167 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G N I + E+ S GE K IR+ +R+A ++ + +++D+ A G +T
Sbjct: 546 GANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAPTVIFFDEIDSIAPIRGLSTD 601
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
V ++VN L A+ V L NK V II N L L+R GR ++
Sbjct: 602 SGVTERIVNQLL---AEMDGIVPL----NK-----VVIIAATNRPDILDPALLRPGRFDR 649
Query: 122 FYWAPT--REDRIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 162
+ P + R + K +N +A+D DI + + + G ++
Sbjct: 650 LIYVPPPDKTARFEILKVHTKNVPLAEDVSLEDIAEKAEGYTGADLE 696
>sp|P49825|FTSH_ODOSI ATP-dependent zinc metalloprotease FtsH OS=Odontella sinensis
GN=ftsH PE=3 SV=1
Length = 644
Score = 35.0 bits (79), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 26/138 (18%)
Query: 34 DIIKKGKM---CCLMINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 85
D+ KK C + I+++DA GAG GG + Q +N L
Sbjct: 269 DLFKKASENAPCIVFIDEIDAVGRERGAGVGGGNDE---REQTLNQLLTE---------- 315
Query: 86 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN 143
M +EN V ++ N L A L+R GR ++ P R R+G+ K RN
Sbjct: 316 --MDGFKENKGVIVVGATNRADILDAALLRPGRFDRQVTVNLPDRLGRVGILKVHARNKP 373
Query: 144 VADD-DIVKLVDTFPGQS 160
+ +D +V+L + PG S
Sbjct: 374 LGEDVSLVQLANRTPGFS 391
>sp|Q9DBY8|NVL_MOUSE Nuclear valosin-containing protein-like OS=Mus musculus GN=Nvl PE=1
SV=1
Length = 855
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 19/142 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G+N I + EL + GE + +RQ ++ A K C + +++DA R +
Sbjct: 639 GLNFISVKGPELLNMYVGESERAVRQVFQRA----KNSAPCVIFFDEVDALCPRRSD-RE 693
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
+ ++VN L ++ G+ +++ V I+ N + ++R GR++K
Sbjct: 694 TGASVRVVNQLL---------TEMDGLETRQQ---VFILAATNRPDIIDPAILRPGRLDK 741
Query: 122 --FYWAPTREDRIGVCKGIFRN 141
F P DR+ + K I +N
Sbjct: 742 TLFVGLPPPADRVAILKTITKN 763
>sp|P46465|PRS6A_ORYSJ 26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp.
japonica GN=TBP1 PE=2 SV=2
Length = 429
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 77
G+ AKL+R ++ A K+ C + I+++DA G R Q L+N
Sbjct: 252 GDGAKLVRDAFQLA----KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN-- 305
Query: 78 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVC 135
QL G + E R+ +I N L L+R GR+++ + P+ E R +
Sbjct: 306 ------QLDGFSSDE---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARIL 356
Query: 136 KGIFRNDNVADD----DIVKLVDTFPGQSI 161
+ R NV D ++ + D F G +
Sbjct: 357 QIHSRKMNVNPDVNFEELARSTDDFNGAQL 386
>sp|P54776|PRS6A_SOLLC 26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum
GN=TBP1 PE=2 SV=1
Length = 423
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 77
G+ AKL+R ++ A K+ C + I+++DA G R Q L+N
Sbjct: 246 GDGAKLVRDAFQLA----KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN-- 299
Query: 78 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVC 135
QL G + + R+ +I N L L+R GR+++ + PT E R +
Sbjct: 300 ------QLDGFSSDD---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARIL 350
Query: 136 KGIFRNDNVADD----DIVKLVDTFPGQSI 161
+ R NV D ++ + D F G +
Sbjct: 351 QIHSRKMNVNPDVNFEELARSTDDFNGAQL 380
>sp|P46470|PRS8_XENLA 26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2
SV=2
Length = 461
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 24/161 (14%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLMINDLDAGAGRMGGTTQY 62
I +S EL GE A+++R+ + RE A I + ++++D+ R+ G +
Sbjct: 207 IRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEIDSIGSRLEGGSGG 259
Query: 63 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
Q L+N QL G E + +I+ N L + L+R GR+++
Sbjct: 260 DSEVQRTMLELLN--------QLDGF---EATKNIKVIMATNRIDILDSALLRPGRIDRK 308
Query: 123 --YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ P E R+ + K R N+ ++ K+ + PG S
Sbjct: 309 IEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGAS 349
>sp|Q9HPF0|CDCH_HALSA Protein CdcH OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=cdcH PE=3 SV=1
Length = 742
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 63
N I + +L S GE K IRQ +R+A + + ++LD+ A G T
Sbjct: 523 NFISVRGPQLLSKWVGESEKAIRQTFRKARQVAP----TVIFFDELDSLAPGRGQTGGNN 578
Query: 64 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 122
V+ ++VN L +L G+ EE V +I N + LIR GR ++
Sbjct: 579 VSERVVNQLL---------TELDGLEEMEE---VMVIAATNRPDIIDPALIRSGRFDRL 625
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 15/71 (21%)
Query: 32 AADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL------ 85
AAD++ C +M L +G+G QY V + A + +I +NP C+++
Sbjct: 267 AADVVHD--TCVVMPGALQSGSG-----GQYAVYSPWFRAWIKHIEENPECLEIYEKPGP 319
Query: 86 --PGMYNKEEN 94
PG K EN
Sbjct: 320 NPPGTKEKHEN 330
>sp|P62198|PRS8_RAT 26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5
PE=1 SV=1
Length = 406
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLMINDLDA-GAGRMGGTTQ 61
I +S EL GE A+++R+ + RE A I + ++++D+ G+ R+ G +
Sbjct: 212 IRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEIDSIGSSRLEGGSG 264
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
Q L+N QL G E + +I+ N L + L+R GR+++
Sbjct: 265 GDSEVQRTMLELLN--------QLDGF---EATKNIKVIMATNRIDILDSALLRPGRIDR 313
Query: 122 F--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ P E R+ + K R N+ ++ K+ + PG S
Sbjct: 314 KIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGAS 355
>sp|P62197|PRS8_PIG 26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1
Length = 406
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLMINDLDA-GAGRMGGTTQ 61
I +S EL GE A+++R+ + RE A I + ++++D+ G+ R+ G +
Sbjct: 212 IRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEIDSIGSSRLEGGSG 264
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
Q L+N QL G E + +I+ N L + L+R GR+++
Sbjct: 265 GDSEVQRTMLELLN--------QLDGF---EATKNIKVIMATNRIDILDSALLRPGRIDR 313
Query: 122 F--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ P E R+ + K R N+ ++ K+ + PG S
Sbjct: 314 KIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGAS 355
>sp|P62196|PRS8_MOUSE 26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1
SV=1
Length = 406
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLMINDLDA-GAGRMGGTTQ 61
I +S EL GE A+++R+ + RE A I + ++++D+ G+ R+ G +
Sbjct: 212 IRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEIDSIGSSRLEGGSG 264
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
Q L+N QL G E + +I+ N L + L+R GR+++
Sbjct: 265 GDSEVQRTMLELLN--------QLDGF---EATKNIKVIMATNRIDILDSALLRPGRIDR 313
Query: 122 F--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ P E R+ + K R N+ ++ K+ + PG S
Sbjct: 314 KIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGAS 355
>sp|P62195|PRS8_HUMAN 26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1
SV=1
Length = 406
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLMINDLDA-GAGRMGGTTQ 61
I +S EL GE A+++R+ + RE A I + ++++D+ G+ R+ G +
Sbjct: 212 IRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEIDSIGSSRLEGGSG 264
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
Q L+N QL G E + +I+ N L + L+R GR+++
Sbjct: 265 GDSEVQRTMLELLN--------QLDGF---EATKNIKVIMATNRIDILDSALLRPGRIDR 313
Query: 122 F--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ P E R+ + K R N+ ++ K+ + PG S
Sbjct: 314 KIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGAS 355
>sp|P62194|PRS8_BOVIN 26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1
Length = 406
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 6 IMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLMINDLDA-GAGRMGGTTQ 61
I +S EL GE A+++R+ + RE A I + ++++D+ G+ R+ G +
Sbjct: 212 IRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEIDSIGSSRLEGGSG 264
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
Q L+N QL G E + +I+ N L + L+R GR+++
Sbjct: 265 GDSEVQRTMLELLN--------QLDGF---EATKNIKVIMATNRIDILDSALLRPGRIDR 313
Query: 122 F--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 160
+ P E R+ + K R N+ ++ K+ + PG S
Sbjct: 314 KIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGAS 355
>sp|A7NR63|RL3_ROSCS 50S ribosomal protein L3 OS=Roseiflexus castenholzii (strain DSM
13941 / HLO8) GN=rplC PE=3 SV=1
Length = 210
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 139 FRNDNVADDDI--VKLVDTF-PGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKS 191
FR DN+AD + V V+ F PGQ +D G + R + V++ G G + G+S
Sbjct: 82 FRTDNIADHKVGDVLTVEMFAPGQRVDVIGTSKGRGFQGVVKRHGFGGGPRTHGQS 137
>sp|Q3UMC0|SPAT5_MOUSE Spermatogenesis-associated protein 5 OS=Mus musculus GN=Spata5 PE=2
SV=2
Length = 893
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 21/166 (12%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G+N + + EL + GE + +R+ +R+A + + ++LDA A G ++
Sbjct: 686 GLNFLAIKGPELMNKYVGESERAVREIFRKARAVAP----SIIFFDELDALAVERGSSSG 741
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
N+AD L M E+ V ++ N + L+R GR+++
Sbjct: 742 AG-----------NVADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDR 790
Query: 122 FYWAP-----TREDRIGVCKGIFRNDNVAD-DDIVKLVDTFPGQSI 161
+ P TR + + + N D D++V DT+ G I
Sbjct: 791 IIYVPLPDAATRREILNLQFHSMPISNEVDLDELVLQTDTYSGAEI 836
>sp|O15381|NVL_HUMAN Nuclear valosin-containing protein-like OS=Homo sapiens GN=NVL PE=1
SV=1
Length = 856
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 19/142 (13%)
Query: 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 61
G+N I + EL + GE + +RQ ++ A K C + +++DA R +
Sbjct: 640 GLNFISVKGPELLNMYVGESERAVRQVFQRA----KNSAPCVIFFDEVDALCPRRSD-RE 694
Query: 62 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 121
+ ++VN L ++ G+ +++ V I+ N + ++R GR++K
Sbjct: 695 TGASVRVVNQLL---------TEMDGLEARQQ---VFIMAATNRPDIIDPAILRPGRLDK 742
Query: 122 --FYWAPTREDRIGVCKGIFRN 141
F P DR+ + K I +N
Sbjct: 743 TLFVGLPPPADRLAILKTITKN 764
>sp|A5USI9|RL3_ROSS1 50S ribosomal protein L3 OS=Roseiflexus sp. (strain RS-1) GN=rplC
PE=3 SV=1
Length = 210
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 139 FRNDNVADDDI--VKLVDTF-PGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKS 191
FR DN+AD + V V+ F PGQ +D G + R + V++ G G + G+S
Sbjct: 82 FRADNIADHKVGDVLTVEMFTPGQRVDVIGTSKGRGFQGVVKRHGFGGGPRTHGQS 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,962,213
Number of Sequences: 539616
Number of extensions: 4881752
Number of successful extensions: 11640
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 11592
Number of HSP's gapped (non-prelim): 84
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)