Query 022739
Match_columns 293
No_of_seqs 85 out of 87
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 05:47:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00020 ribulose bisphosphate 100.0 2.8E-92 6.1E-97 673.9 17.8 240 1-241 172-413 (413)
2 KOG0651 26S proteasome regulat 100.0 1.3E-61 2.9E-66 457.2 10.2 198 1-237 190-387 (388)
3 PF00004 AAA: ATPase family as 98.8 2.7E-09 5.9E-14 80.6 3.9 110 1-126 22-131 (132)
4 PRK03992 proteasome-activating 98.1 5.4E-06 1.2E-10 78.3 6.4 143 2-158 190-335 (389)
5 TIGR01242 26Sp45 26S proteasom 97.8 6.3E-05 1.4E-09 69.6 6.8 142 3-158 182-326 (364)
6 CHL00195 ycf46 Ycf46; Provisio 97.7 4.6E-05 1E-09 75.4 5.8 137 2-156 284-425 (489)
7 TIGR03689 pup_AAA proteasome A 97.3 0.00069 1.5E-08 67.9 7.2 124 7-142 256-381 (512)
8 PTZ00454 26S protease regulato 97.1 0.0009 2E-08 64.5 5.7 139 2-155 204-346 (398)
9 TIGR01243 CDC48 AAA family ATP 96.8 0.0097 2.1E-07 60.6 10.9 161 1-181 511-674 (733)
10 PRK10733 hflB ATP-dependent me 96.2 0.0039 8.4E-08 63.3 3.7 124 2-141 210-337 (644)
11 COG0464 SpoVK ATPases of the A 96.2 0.027 5.8E-07 54.2 9.0 133 2-154 301-441 (494)
12 TIGR01241 FtsH_fam ATP-depende 96.2 0.0046 1E-07 60.0 3.7 124 2-143 113-242 (495)
13 KOG0733 Nuclear AAA ATPase (VC 95.0 0.051 1.1E-06 57.4 6.5 145 1-158 247-394 (802)
14 CHL00176 ftsH cell division pr 94.7 0.12 2.6E-06 53.2 8.1 141 2-158 241-386 (638)
15 PTZ00361 26 proteosome regulat 94.3 0.047 1E-06 53.9 4.1 137 3-154 243-383 (438)
16 COG1222 RPT1 ATP-dependent 26S 93.9 0.14 3E-06 51.1 6.3 142 3-159 211-359 (406)
17 TIGR01243 CDC48 AAA family ATP 90.3 1 2.2E-05 46.3 7.8 140 2-158 237-379 (733)
18 KOG0652 26S proteasome regulat 90.0 0.98 2.1E-05 44.6 6.9 123 19-156 247-376 (424)
19 KOG0726 26S proteasome regulat 88.5 0.97 2.1E-05 45.1 5.8 106 10-130 252-358 (440)
20 PRK04195 replication factor C 87.6 2.8 6E-05 41.1 8.3 126 2-158 64-194 (482)
21 KOG0743 AAA+-type ATPase [Post 86.3 0.66 1.4E-05 47.0 3.3 138 40-215 286-430 (457)
22 TIGR00763 lon ATP-dependent pr 85.2 2.8 6.1E-05 43.7 7.4 140 2-158 372-536 (775)
23 PHA02544 44 clamp loader, smal 85.1 3.4 7.4E-05 37.0 7.0 109 22-157 81-200 (316)
24 PRK12402 replication factor C 83.6 1.1 2.4E-05 40.0 3.1 110 23-159 107-219 (337)
25 KOG0729 26S proteasome regulat 74.9 3.9 8.5E-05 40.6 4.1 113 6-135 240-357 (435)
26 CHL00181 cbbX CbbX; Provisiona 71.7 3 6.4E-05 38.7 2.4 145 6-182 95-249 (287)
27 CHL00206 ycf2 Ycf2; Provisiona 66.2 6.7 0.00015 46.5 4.1 93 26-134 1718-1815(2281)
28 PRK11034 clpA ATP-dependent Cl 62.1 8.9 0.00019 40.7 3.9 122 26-169 264-407 (758)
29 KOG0730 AAA+-type ATPase [Post 61.7 11 0.00024 40.3 4.5 135 2-155 243-381 (693)
30 KOG0730 AAA+-type ATPase [Post 59.2 5.1 0.00011 42.7 1.5 158 2-183 493-656 (693)
31 KOG0733 Nuclear AAA ATPase (VC 57.9 14 0.0003 40.0 4.4 206 2-241 570-794 (802)
32 TIGR02880 cbbX_cfxQ probable R 49.5 27 0.00058 32.2 4.4 122 5-152 93-223 (284)
33 PF04611 AalphaY_MDB: Mating t 48.5 14 0.0003 32.8 2.3 24 160-183 99-122 (147)
34 TIGR02881 spore_V_K stage V sp 48.1 23 0.0005 31.6 3.7 136 6-168 78-225 (261)
35 PF12157 DUF3591: Protein of u 47.7 40 0.00086 34.4 5.6 91 134-237 246-343 (457)
36 COG1223 Predicted ATPase (AAA+ 47.1 11 0.00024 37.3 1.6 119 5-159 179-303 (368)
37 cd01396 MeCP2_MBD MeCP2, MBD1, 44.0 20 0.00043 28.0 2.3 35 116-162 23-57 (77)
38 TIGR03345 VI_ClpV1 type VI sec 44.0 66 0.0014 34.7 6.9 162 34-243 662-843 (852)
39 PF07647 SAM_2: SAM domain (St 42.8 19 0.00042 25.4 2.0 51 174-226 7-58 (66)
40 PRK14086 dnaA chromosomal repl 42.0 43 0.00094 35.4 5.0 104 40-167 377-489 (617)
41 cd00166 SAM Sterile alpha moti 39.4 11 0.00024 25.6 0.3 50 174-225 5-54 (63)
42 PRK00149 dnaA chromosomal repl 38.9 20 0.00043 34.8 2.0 102 40-168 211-324 (450)
43 KOG0735 AAA+-type ATPase [Post 36.6 1.4E+02 0.0031 33.2 7.9 132 38-192 758-902 (952)
44 KOG0727 26S proteasome regulat 34.7 1E+02 0.0022 30.9 5.9 132 8-154 220-355 (408)
45 KOG0734 AAA+-type ATPase conta 33.4 1.1E+02 0.0024 33.1 6.4 134 3-155 363-516 (752)
46 TIGR02397 dnaX_nterm DNA polym 33.4 35 0.00075 30.9 2.5 63 96-160 147-212 (355)
47 PRK09087 hypothetical protein; 33.0 45 0.00098 29.8 3.1 69 96-165 117-194 (226)
48 COG4387 Mu-like prophage prote 32.8 35 0.00076 30.2 2.3 21 23-43 84-107 (139)
49 PRK08691 DNA polymerase III su 32.7 97 0.0021 33.5 5.9 118 38-183 117-244 (709)
50 KOG2511 Nicotinic acid phospho 31.6 51 0.0011 33.5 3.5 74 14-88 273-359 (420)
51 PRK08727 hypothetical protein; 31.3 28 0.00061 30.9 1.5 104 40-167 93-205 (233)
52 cd02907 Macro_Af1521_BAL_like 30.9 1.4E+02 0.003 25.5 5.5 38 20-57 92-129 (175)
53 PRK14970 DNA polymerase III su 30.6 95 0.002 28.9 4.9 95 38-159 106-202 (367)
54 KOG4330 Uncharacterized conser 30.6 77 0.0017 29.6 4.2 36 203-238 142-185 (206)
55 PF01524 Gemini_V1: Geminiviru 30.0 36 0.00079 27.6 1.8 57 123-181 1-63 (78)
56 cd00009 AAA The AAA+ (ATPases 29.9 1.2E+02 0.0027 22.0 4.5 16 93-108 117-132 (151)
57 KOG0739 AAA+-type ATPase [Post 29.6 33 0.00072 34.7 1.9 47 7-57 196-242 (439)
58 PF15167 DUF4581: Domain of un 29.5 20 0.00044 31.2 0.3 26 102-129 12-37 (128)
59 KOG1431 GDP-L-fucose synthetas 28.5 48 0.001 32.4 2.7 31 2-43 230-265 (315)
60 PF10722 YbjN: Putative bacter 28.3 14 0.0003 27.4 -0.8 52 115-168 75-126 (127)
61 TIGR02639 ClpA ATP-dependent C 28.0 1.4E+02 0.0029 31.4 6.0 71 111-183 331-429 (731)
62 PRK11034 clpA ATP-dependent Cl 26.8 3.9E+02 0.0084 28.9 9.1 160 35-239 552-724 (758)
63 PRK00440 rfc replication facto 26.7 43 0.00094 29.6 1.9 63 95-159 131-196 (319)
64 PRK14088 dnaA chromosomal repl 26.4 62 0.0013 31.9 3.1 100 40-167 194-306 (440)
65 PF15097 Ig_J_chain: Immunoglo 26.3 26 0.00056 30.7 0.4 44 58-103 72-117 (134)
66 PRK10834 vancomycin high tempe 26.1 1.1E+02 0.0025 28.6 4.6 29 19-47 60-88 (239)
67 PF09818 ABC_ATPase: Predicted 25.8 24 0.00052 36.1 0.2 33 113-145 356-390 (448)
68 PRK04024 cofactor-independent 25.7 74 0.0016 31.7 3.5 85 16-106 270-370 (412)
69 PRK06718 precorrin-2 dehydroge 25.3 1.2E+02 0.0025 26.9 4.3 15 159-173 150-164 (202)
70 PF14771 DUF4476: Domain of un 25.0 46 0.001 25.8 1.6 50 126-175 21-73 (95)
71 KOG1202 Animal-type fatty acid 24.6 61 0.0013 38.2 2.9 93 81-186 1517-1627(2376)
72 KOG4565 E93 protein involved i 23.7 43 0.00094 31.1 1.4 22 23-44 113-142 (206)
73 KOG0728 26S proteasome regulat 22.9 1E+02 0.0022 30.8 3.8 116 5-135 209-327 (404)
74 PF00536 SAM_1: SAM domain (St 22.8 55 0.0012 23.0 1.5 51 174-226 6-56 (64)
75 COG2733 Predicted membrane pro 21.5 75 0.0016 32.5 2.6 97 118-237 158-259 (415)
76 KOG4245 Predicted metal-depend 21.3 27 0.00059 33.5 -0.4 38 115-163 137-179 (297)
77 TIGR02928 orc1/cdc6 family rep 21.1 2.7E+02 0.0058 25.5 5.9 56 32-107 120-176 (365)
78 PF04816 DUF633: Family of unk 20.9 1.3E+02 0.0028 27.1 3.7 92 143-236 74-175 (205)
79 PF11348 DUF3150: Protein of u 20.6 3E+02 0.0065 25.8 6.2 47 142-193 30-78 (257)
80 PF05334 DUF719: Protein of un 20.3 1.6E+02 0.0034 27.0 4.2 59 174-232 83-163 (181)
81 PRK14961 DNA polymerase III su 20.2 56 0.0012 30.9 1.4 93 38-158 117-212 (363)
82 PRK08116 hypothetical protein; 20.0 1.3E+02 0.0029 27.6 3.8 50 34-106 171-221 (268)
No 1
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=2.8e-92 Score=673.87 Aligned_cols=240 Identities=82% Similarity=1.274 Sum_probs=235.5
Q ss_pred CCCcceeecccccCCCCCCCchHHHHHHHHHHHHHHh-cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccC
Q 022739 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 79 (293)
Q Consensus 1 MGi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik-~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDn 79 (293)
||+++|+||+|||+|+|+|||+|+||++|++|++++| +|+||||||||||||+|+++ +||+|||+|+|++|||||+||
T Consensus 172 lg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~-~~~~tv~~qiV~~tLLnl~D~ 250 (413)
T PLN00020 172 MGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG-TTQYTVNNQMVNGTLMNIADN 250 (413)
T ss_pred cCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC-CCCcchHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999996 99999999999999999998 799999999999999999999
Q ss_pred CCccCCCCcCC-CCCCCCCCEEEecCCccccccccccCCCccccccCcCCccchhhhhcccccCCCChHHHHHHhhhCCC
Q 022739 80 PTCVQLPGMYN-KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 158 (293)
Q Consensus 80 Pt~Vqlpg~y~-~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~ 158 (293)
||+||+||.|+ .+.++|||||+||||+++||+||+|+||||||||.|++++|++|++.+|++|+++.+||++||++||+
T Consensus 251 p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~~f~g 330 (413)
T PLN00020 251 PTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDDGVSREDVVKLVDTFPG 330 (413)
T ss_pred CccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHcCCC
Confidence 99999999994 56789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHhhhhhhhhhHHHHHHHhhhcccccccccccCCCCCCcccCCcCCHHHHHHHHHHHHHHHHHHhhhhhHHHHhcc
Q 022739 159 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSE 238 (293)
Q Consensus 159 Q~iDFFGALRaR~YDd~Vr~wi~~vG~e~ig~~lvns~~~~p~f~~p~~tl~~Lle~G~~lv~EQe~V~~~~Ls~eYl~~ 238 (293)
|+||||||||||+|||+||+||+++|+|+||++|||+++++|+|++|+|||++|||+|++|++|||||+++|||+|||++
T Consensus 331 q~~Df~GAlrar~yd~~v~~~i~~~g~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~eq~~v~~~~l~~~y~~~ 410 (413)
T PLN00020 331 QPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVREQENVKRVQLSDEYLKN 410 (413)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 022739 239 AAL 241 (293)
Q Consensus 239 a~l 241 (293)
++|
T Consensus 411 ~~~ 413 (413)
T PLN00020 411 AAL 413 (413)
T ss_pred ccC
Confidence 875
No 2
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-61 Score=457.24 Aligned_cols=198 Identities=27% Similarity=0.377 Sum_probs=188.0
Q ss_pred CCCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCC
Q 022739 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 1 MGi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
||+||++||||||||..|||||||||+|||+|+++++ |||||||||||.||+ .||+|||||+|++|||||+|
T Consensus 190 mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~p----ciifmdeiDAigGRr--~se~Ts~dreiqrTLMeLln-- 261 (388)
T KOG0651|consen 190 MGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIP----CIIFMDEIDAIGGRR--FSEGTSSDREIQRTLMELLN-- 261 (388)
T ss_pred cCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCc----eEEeehhhhhhccEE--eccccchhHHHHHHHHHHHH--
Confidence 8999999999999999999999999999999999998 999999999999999 69999999999999999999
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccccCcCCccchhhhhcccccCCCChHHHHHHhhhCCCCc
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQS 160 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q~ 160 (293)
|++....++|||||+|||||||||+||||+||||||||.| +.++|.+|| |+.||+|+
T Consensus 262 ------qmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iP----lpne~~r~~-------------I~Kih~~~ 318 (388)
T KOG0651|consen 262 ------QMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIP----LPNEQARLG-------------ILKIHVQP 318 (388)
T ss_pred ------hhccchhcccccEEEecCCccccchhhcCCccccceeccC----Ccchhhcee-------------eEeecccc
Confidence 6677778999999999999999999999999999999999 999999999 99999999
Q ss_pred chhHhhhhhhhhhHHHHHHHhhhcccccccccccCCCCCCcccCCcCCHHHHHHHHHHHHHHHHHHhhhhhHHHHhc
Q 022739 161 IDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLS 237 (293)
Q Consensus 161 iDFFGALRaR~YDd~Vr~wi~~vG~e~ig~~lvns~~~~p~f~~p~~tl~~Lle~G~~lv~EQe~V~~~~Ls~eYl~ 237 (293)
|||||+|| |++|++|+...|.+. +..+..|++ .|..|+++-+.|+|+|.++++||.++|+++|+.+|++
T Consensus 319 i~~~Geid----~eaivK~~d~f~gad---~rn~~tEag-~Fa~~~~~~~vl~Ed~~k~vrk~~~~kkle~~~~Y~~ 387 (388)
T KOG0651|consen 319 IDFHGEID----DEAILKLVDGFNGAD---LRNVCTEAG-MFAIPEERDEVLHEDFMKLVRKQADAKKLELSLDYKK 387 (388)
T ss_pred cccccccc----HHHHHHHHhccChHH---Hhhhccccc-ccccchhhHHHhHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 99999999 999999999997655 445566664 9999999999999999999999999999999999985
No 3
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.84 E-value=2.7e-09 Score=80.61 Aligned_cols=110 Identities=27% Similarity=0.406 Sum_probs=95.2
Q ss_pred CCCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCC
Q 022739 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 1 MGi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
+|+..+.++++++.+..+++..+.|+.-+.+|.+.- +.|+|+|.|+|+=.+.. .++.....+.+..+|+++-+++
T Consensus 22 l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~vl~iDe~d~l~~~~--~~~~~~~~~~~~~~L~~~l~~~ 96 (132)
T PF00004_consen 22 LGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA---KPCVLFIDEIDKLFPKS--QPSSSSFEQRLLNQLLSLLDNP 96 (132)
T ss_dssp TTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS---TSEEEEEETGGGTSHHC--STSSSHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccc---cceeeeeccchhccccc--ccccccccccccceeeeccccc
Confidence 467788999999999999999999999988864333 68999999999988887 4567777888889999999998
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccccCc
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 126 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~P 126 (293)
... .+++.+|.|.|+...+..+|+| ||+++.+|=|
T Consensus 97 ~~~----------~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 97 SSK----------NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp TTT----------SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred ccc----------cccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 776 5789999999999999999999 9999987754
No 4
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.10 E-value=5.4e-06 Score=78.35 Aligned_cols=143 Identities=27% Similarity=0.378 Sum_probs=101.4
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
+...+.+++.+|-+.+.|+..+++|+-+..| ++...|+|||.|+|+=.+.-++.. +-+..-++.+|+.+-..
T Consensus 190 ~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~IlfiDEiD~l~~~r~~~~--~~~~~~~~~~l~~lL~~-- 261 (389)
T PRK03992 190 NATFIRVVGSELVQKFIGEGARLVRELFELA----REKAPSIIFIDEIDAIAAKRTDSG--TSGDREVQRTLMQLLAE-- 261 (389)
T ss_pred CCCEEEeehHHHhHhhccchHHHHHHHHHHH----HhcCCeEEEEechhhhhcccccCC--CCccHHHHHHHHHHHHh--
Confidence 4567889999999999999999998655444 456789999999999665543211 11223345555554321
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCCCh-HHHHHHhhhCCC
Q 022739 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFPG 158 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~~~-~dv~~LVd~Fp~ 158 (293)
+.+ -....+|.||.|.|....|-..|.|.||.|+.++ -|+.++|..|++..++.-.++. .++..|+....+
T Consensus 262 ---ld~---~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g 335 (389)
T PRK03992 262 ---MDG---FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEG 335 (389)
T ss_pred ---ccc---cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCC
Confidence 111 1123478999999999999999999999999877 6999999999988777655543 456666655543
No 5
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.76 E-value=6.3e-05 Score=69.65 Aligned_cols=142 Identities=26% Similarity=0.358 Sum_probs=95.1
Q ss_pred CcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCc
Q 022739 3 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 82 (293)
Q Consensus 3 i~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~ 82 (293)
..-+.++++++-+.+.|+..+++|+-++.| +....|+|||-|+|+=.+...+. .+-..+-++.+|+.+-..
T Consensus 182 ~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~il~iDEiD~l~~~~~~~--~~~~~~~~~~~l~~ll~~--- 252 (364)
T TIGR01242 182 ATFIRVVGSELVRKYIGEGARLVREIFELA----KEKAPSIIFIDEIDAIAAKRTDS--GTSGDREVQRTLMQLLAE--- 252 (364)
T ss_pred CCEEecchHHHHHHhhhHHHHHHHHHHHHH----HhcCCcEEEhhhhhhhccccccC--CCCccHHHHHHHHHHHHH---
Confidence 445667788888888899888887755543 45678999999999855443211 111233344455544321
Q ss_pred cCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCCCh-HHHHHHhhhCCC
Q 022739 83 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFPG 158 (293)
Q Consensus 83 Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~~~-~dv~~LVd~Fp~ 158 (293)
+.+ + .....|-||.|.|....+-..|.|-||.|++++ -|+.++|..|+....+.-.++. .+...|+...++
T Consensus 253 --ld~-~--~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g 326 (364)
T TIGR01242 253 --LDG-F--DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEG 326 (364)
T ss_pred --hhC-C--CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCC
Confidence 111 1 123468899999999999999999999999887 5899999999877665555443 345555555543
No 6
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.73 E-value=4.6e-05 Score=75.35 Aligned_cols=137 Identities=23% Similarity=0.339 Sum_probs=96.3
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
|+.-+.++.|+|.+.+-|+..+.+|+-++.|. .-+-|+|||.++|+..++-+....-...++++ +||.+.-++
T Consensus 284 ~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~----~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl-~~lL~~l~~-- 356 (489)
T CHL00195 284 QLPLLRLDVGKLFGGIVGESESRMRQMIRIAE----ALSPCILWIDEIDKAFSNSESKGDSGTTNRVL-ATFITWLSE-- 356 (489)
T ss_pred CCCEEEEEhHHhcccccChHHHHHHHHHHHHH----hcCCcEEEehhhhhhhccccCCCCchHHHHHH-HHHHHHHhc--
Confidence 55567889999999999999999987776553 33689999999998766432111111223333 444443332
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccccC--cCCccchhhhhcccccCC---CChHHHHHHhhhC
Q 022739 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN---VADDDIVKLVDTF 156 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~--Ptred~i~iv~~if~~Dg---~~~~dv~~LVd~F 156 (293)
....|.||.|-|+...|=..|+|-||.|+.++= |+.++|..|....++.-+ .+..++..|+..-
T Consensus 357 -----------~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T 425 (489)
T CHL00195 357 -----------KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLS 425 (489)
T ss_pred -----------CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhc
Confidence 134689999999999888789999999975543 899999999987776533 3355666666543
No 7
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.26 E-value=0.00069 Score=67.91 Aligned_cols=124 Identities=19% Similarity=0.280 Sum_probs=90.8
Q ss_pred eecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCC
Q 022739 7 MMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86 (293)
Q Consensus 7 ~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlp 86 (293)
-++..+|-+.+-|+-.+.||+-+..|.+....|+.|+|||.++|+=++.-+.+..-.+.+.++ .+|.+.-|.-
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il-~~LL~~LDgl------ 328 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVV-PQLLSELDGV------ 328 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHH-HHHHHHhccc------
Confidence 345678888899999999999998888888899999999999998654433211112223333 4555554432
Q ss_pred CcCCCCCCCCCCEEEecCCccccccccccCCCccc-c-ccCcCCccchhhhhcccccC
Q 022739 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK-F-YWAPTREDRIGVCKGIFRND 142 (293)
Q Consensus 87 g~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeK-F-YW~Ptred~i~iv~~if~~D 142 (293)
+...+|-||.|-|....|=-.|+|-||+|+ + +=.|+.+++..|....+.++
T Consensus 329 -----~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~ 381 (512)
T TIGR03689 329 -----ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS 381 (512)
T ss_pred -----ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc
Confidence 123578999999998887666999999996 3 33599999999998887653
No 8
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.07 E-value=0.0009 Score=64.50 Aligned_cols=139 Identities=22% Similarity=0.319 Sum_probs=92.7
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccC-CcCCCCcceeecchhhhhhhhhhccCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~-Grf~~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
+..-+.+++.++.+.+.|+..+.+|+-+..| +..+.|+|||.++|+=. .|++..+...-.-|-+..+|++.-|.-
T Consensus 204 ~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A----~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 204 TATFIRVVGSEFVQKYLGEGPRMVRDVFRLA----RENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred CCCEEEEehHHHHHHhcchhHHHHHHHHHHH----HhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 3455667778888889999988887766554 45678999999999843 344322222112233334555544421
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCCCh-HHHHHHhhh
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD-DDIVKLVDT 155 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~~~-~dv~~LVd~ 155 (293)
....+|-||.|.|....|=..|+|-||.|+-.+ -|+.++|..|...+++.-+++. -++..|+..
T Consensus 280 -----------~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~ 346 (398)
T PTZ00454 280 -----------DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSR 346 (398)
T ss_pred -----------CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHH
Confidence 113467899999999888777999999987544 3888999999988777666553 245555443
No 9
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.83 E-value=0.0097 Score=60.65 Aligned_cols=161 Identities=25% Similarity=0.330 Sum_probs=104.1
Q ss_pred CCCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCC
Q 022739 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 1 MGi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
+|++-+.+++-||-+.+-|+-.+.||+=++.| ++...|+|||.++|+=++.-+......+. +-+..+|.+.-|.
T Consensus 511 ~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A----~~~~p~iifiDEid~l~~~r~~~~~~~~~-~~~~~~lL~~ldg- 584 (733)
T TIGR01243 511 SGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAPAIIFFDEIDAIAPARGARFDTSVT-DRIVNQLLTEMDG- 584 (733)
T ss_pred cCCCEEEEehHHHhhcccCcHHHHHHHHHHHH----HhcCCEEEEEEChhhhhccCCCCCCccHH-HHHHHHHHHHhhc-
Confidence 35677888999999999999999998777666 45678999999999865544322122222 2233344443332
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccccC--cCCccchhhhhcccccCCCC-hHHHHHHhhhCC
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFP 157 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~--Ptred~i~iv~~if~~Dg~~-~~dv~~LVd~Fp 157 (293)
-++..+|-||.|-|....|=.-|+|-||.|+.+.= |+.++|..|.....+.-.++ ..|+..|...-.
T Consensus 585 ----------~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~ 654 (733)
T TIGR01243 585 ----------IQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTE 654 (733)
T ss_pred ----------ccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcC
Confidence 12345788999999999888889999999986543 78888888875444333332 345666666554
Q ss_pred CCcchhHhhhhhhhhhHHHHHHHh
Q 022739 158 GQSIDFFGALRARVYDDEVRKWIS 181 (293)
Q Consensus 158 ~Q~iDFFGALRaR~YDd~Vr~wi~ 181 (293)
+ |-||=-..+..++....+.
T Consensus 655 g----~sgadi~~~~~~A~~~a~~ 674 (733)
T TIGR01243 655 G----YTGADIEAVCREAAMAALR 674 (733)
T ss_pred C----CCHHHHHHHHHHHHHHHHH
Confidence 4 4444333344444444443
No 10
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.23 E-value=0.0039 Score=63.28 Aligned_cols=124 Identities=24% Similarity=0.351 Sum_probs=84.7
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcc--eeecchhhhhhhhhhccC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADN 79 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ--~TVNnQ~V~aTLMNiaDn 79 (293)
|+..+.+|+.++.+...|+-++.+|.-+..| ++...|+|||.++|+=..+-+.... ..-..|.+|.-|.- -|
T Consensus 210 ~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a----~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~-md- 283 (644)
T PRK10733 210 KVPFFTISGSDFVEMFVGVGASRVRDMFEQA----KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE-MD- 283 (644)
T ss_pred CCCEEEEehHHhHHhhhcccHHHHHHHHHHH----HhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHh-hh-
Confidence 5566778888888888888888777776655 5567899999999995443321100 00112344333321 12
Q ss_pred CCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccccC--cCCccchhhhhccccc
Q 022739 80 PTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN 141 (293)
Q Consensus 80 Pt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~--Ptred~i~iv~~if~~ 141 (293)
|- ....+|-+|.|-|....|-..|.|.||-|+...= |+.++|..|++..++.
T Consensus 284 -------g~---~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 284 -------GF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred -------cc---cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 21 1235678888999999999999999999987765 7878899998877654
No 11
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.027 Score=54.24 Aligned_cols=133 Identities=26% Similarity=0.358 Sum_probs=94.3
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcc---eeecchhhhhhhhhhcc
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ---YTVNNQMVNATLMNIAD 78 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ---~TVNnQ~V~aTLMNiaD 78 (293)
+.+-+.+++++|=|.|-||-.|.||+-++.|- +.+.|+|||..+|+-+..-+.+.. -.|.||.. |.|+-..
T Consensus 301 ~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~----~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL--~~~d~~e 374 (494)
T COG0464 301 RSRFISVKGSELLSKWVGESEKNIRELFEKAR----KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLL--TELDGIE 374 (494)
T ss_pred CCeEEEeeCHHHhccccchHHHHHHHHHHHHH----cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHH--HHhcCCC
Confidence 55667777889999999999999999999886 789999999999999988763211 13444433 3333221
Q ss_pred CCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccccC--cCCccchhhhhcccccCCCC---hHHHHHHh
Q 022739 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA---DDDIVKLV 153 (293)
Q Consensus 79 nPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~--Ptred~i~iv~~if~~Dg~~---~~dv~~LV 153 (293)
. ...|=+|-+=|-...|=.-+.|-||.|+..-- |+.++|..|.+...++-+.+ .-+...|+
T Consensus 375 ~--------------~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~ 440 (494)
T COG0464 375 K--------------AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELA 440 (494)
T ss_pred c--------------cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHH
Confidence 1 12244677778777777778999999975443 88899999997777743332 45555555
Q ss_pred h
Q 022739 154 D 154 (293)
Q Consensus 154 d 154 (293)
.
T Consensus 441 ~ 441 (494)
T COG0464 441 E 441 (494)
T ss_pred H
Confidence 5
No 12
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.16 E-value=0.0046 Score=60.04 Aligned_cols=124 Identities=25% Similarity=0.344 Sum_probs=82.2
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCC----CCcceeecchhhhhhhhhhc
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIA 77 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~----~~TQ~TVNnQ~V~aTLMNia 77 (293)
|+.-+.+|+.++.+.+.|+-.+.||.-+.+| ++...|+|||.|+|+=...-+ +..+. -.+.+| +|.+.-
T Consensus 113 ~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a----~~~~p~Il~iDEid~l~~~r~~~~~~~~~~--~~~~~~-~lL~~~ 185 (495)
T TIGR01241 113 GVPFFSISGSDFVEMFVGVGASRVRDLFEQA----KKNAPCIIFIDEIDAVGRQRGAGLGGGNDE--REQTLN-QLLVEM 185 (495)
T ss_pred CCCeeeccHHHHHHHHhcccHHHHHHHHHHH----HhcCCCEEEEechhhhhhccccCcCCccHH--HHHHHH-HHHhhh
Confidence 4556778888888888888888777766655 456789999999998322211 11111 113333 233333
Q ss_pred cCCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCC
Q 022739 78 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN 143 (293)
Q Consensus 78 DnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg 143 (293)
|.-. ....|-||.|-|....|=.-|+|.||.|+... -|+.++|..|+...++...
T Consensus 186 d~~~-----------~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~ 242 (495)
T TIGR01241 186 DGFG-----------TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK 242 (495)
T ss_pred cccc-----------CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC
Confidence 3211 13458899999999888888999999987544 3888899999887765443
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.051 Score=57.36 Aligned_cols=145 Identities=26% Similarity=0.375 Sum_probs=105.4
Q ss_pred CCCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCC
Q 022739 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 1 MGi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
+|+.-+-+||=|+-|+--||--+-||+=+++|. .--.|++||.||||=.++=. .-|-..--- +.++|.+.-|++
T Consensus 247 l~vPf~~isApeivSGvSGESEkkiRelF~~A~----~~aPcivFiDeIDAI~pkRe-~aqreMErR-iVaQLlt~mD~l 320 (802)
T KOG0733|consen 247 LGVPFLSISAPEIVSGVSGESEKKIRELFDQAK----SNAPCIVFIDEIDAITPKRE-EAQREMERR-IVAQLLTSMDEL 320 (802)
T ss_pred cCCceEeecchhhhcccCcccHHHHHHHHHHHh----ccCCeEEEeecccccccchh-hHHHHHHHH-HHHHHHHhhhcc
Confidence 477788899999999999999999999999885 45789999999999777764 345444434 459999999999
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccc--ccCcCCccchhhhhcccccCCCC-hHHHHHHhhhCC
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFP 157 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKF--YW~Ptred~i~iv~~if~~Dg~~-~~dv~~LVd~Fp 157 (293)
++.---| ..|=+|-+-|-.-.|=.-|-|-||.|.= .=-|++..|..|++-|-+.=.++ .=|+.+|-..=|
T Consensus 321 ~~~~~~g-------~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTP 393 (802)
T KOG0733|consen 321 SNEKTKG-------DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTP 393 (802)
T ss_pred cccccCC-------CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCC
Confidence 8875422 4466777778888888889999998752 12377777777766665433333 234444444444
Q ss_pred C
Q 022739 158 G 158 (293)
Q Consensus 158 ~ 158 (293)
|
T Consensus 394 G 394 (802)
T KOG0733|consen 394 G 394 (802)
T ss_pred C
Confidence 3
No 14
>CHL00176 ftsH cell division protein; Validated
Probab=94.67 E-value=0.12 Score=53.22 Aligned_cols=141 Identities=25% Similarity=0.322 Sum_probs=85.6
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceee--cchhhhhhhhhhccC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTV--NNQMVNATLMNIADN 79 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TV--NnQ~V~aTLMNiaDn 79 (293)
|+..+.+|+.++.+...|.-.+.+|. ..+..+++..|+|||.|+|+=..+-+...+..- -.|.++ .|.+.-|.
T Consensus 241 ~~p~i~is~s~f~~~~~g~~~~~vr~----lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~-~LL~~~dg 315 (638)
T CHL00176 241 EVPFFSISGSEFVEMFVGVGAARVRD----LFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLN-QLLTEMDG 315 (638)
T ss_pred CCCeeeccHHHHHHHhhhhhHHHHHH----HHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHH-HHHhhhcc
Confidence 45566778777776666665554444 444456788999999999974322111111000 012222 23333332
Q ss_pred CCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCCC-hHHHHHHhhhC
Q 022739 80 PTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA-DDDIVKLVDTF 156 (293)
Q Consensus 80 Pt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~~-~~dv~~LVd~F 156 (293)
- ....+|=+|.|-|....|=..|+|-||.|.... -|+.++|..|++...+...+. ..++..|...-
T Consensus 316 ~-----------~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t 384 (638)
T CHL00176 316 F-----------KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRT 384 (638)
T ss_pred c-----------cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcC
Confidence 1 123467788899998777666999999987443 499999999998777654332 34455555555
Q ss_pred CC
Q 022739 157 PG 158 (293)
Q Consensus 157 p~ 158 (293)
||
T Consensus 385 ~G 386 (638)
T CHL00176 385 PG 386 (638)
T ss_pred CC
Confidence 55
No 15
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.32 E-value=0.047 Score=53.88 Aligned_cols=137 Identities=20% Similarity=0.251 Sum_probs=87.0
Q ss_pred CcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCC-CcceeecchhhhhhhhhhccCCC
Q 022739 3 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGG-TTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 3 i~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~-~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
..-+.+++.+|-+.+-|+-.+++|+-++.|. .+..|+|||.++|+=.++-.+ .+...-.-|-+...|+|.-|.-
T Consensus 243 ~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~- 317 (438)
T PTZ00361 243 ATFLRVVGSELIQKYLGDGPKLVRELFRVAE----ENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF- 317 (438)
T ss_pred CCEEEEecchhhhhhcchHHHHHHHHHHHHH----hCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh-
Confidence 3446677888888888998899888887664 468899999999986553321 1111000111122344443321
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccc--cCcCCccchhhhhcccccCCCCh-HHHHHHhh
Q 022739 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVCKGIFRNDNVAD-DDIVKLVD 154 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFY--W~Ptred~i~iv~~if~~Dg~~~-~dv~~LVd 154 (293)
.....|-||+|-|....|=.-|+|.||.|.-. =-|+.++|..|+....+.-.++. -+++.++.
T Consensus 318 ----------~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~ 383 (438)
T PTZ00361 318 ----------DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIM 383 (438)
T ss_pred ----------cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHH
Confidence 11236789999999988865589999998633 23888999999876655544432 24444443
No 16
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.14 Score=51.09 Aligned_cols=142 Identities=26% Similarity=0.442 Sum_probs=105.4
Q ss_pred CcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccc-cCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022739 3 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 3 i~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDA-G~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
++-|-+++.||-..-=||=+||+|+=++ +-|.-+.|.+||.-||| |.=||+++|. .--=|+=|||-|-.
T Consensus 211 AtFIrvvgSElVqKYiGEGaRlVRelF~----lArekaPsIIFiDEIDAIg~kR~d~~t~---gDrEVQRTmleLL~--- 280 (406)
T COG1222 211 ATFIRVVGSELVQKYIGEGARLVRELFE----LAREKAPSIIFIDEIDAIGAKRFDSGTS---GDREVQRTMLELLN--- 280 (406)
T ss_pred ceEEEeccHHHHHHHhccchHHHHHHHH----HHhhcCCeEEEEechhhhhcccccCCCC---chHHHHHHHHHHHH---
Confidence 4567888999999999999999986655 55677899999999999 6668875444 44567777776643
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhh----cccccCCCChHHHHHHhhh
Q 022739 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 155 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~----~if~~Dg~~~~dv~~LVd~ 155 (293)
|+-| | .+...|-||..=|-+.+|=--|+|-||.|...= -|+.+.|..|.+ .|=-++++.-+.+.++-+-
T Consensus 281 --qlDG-F--D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g 355 (406)
T COG1222 281 --QLDG-F--DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEG 355 (406)
T ss_pred --hccC-C--CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCC
Confidence 3433 2 235678999999999999888999999997543 377777877763 3445566767777777776
Q ss_pred CCCC
Q 022739 156 FPGQ 159 (293)
Q Consensus 156 Fp~Q 159 (293)
|.|-
T Consensus 356 ~sGA 359 (406)
T COG1222 356 FSGA 359 (406)
T ss_pred CchH
Confidence 6554
No 17
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.34 E-value=1 Score=46.25 Aligned_cols=140 Identities=27% Similarity=0.333 Sum_probs=89.4
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
|...+.+++.++.+...|+-.+.+|.-+.+|. +...|+|||.|+|+=.+.-+ .....+... +..+|.++-|.=
T Consensus 237 ~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~----~~~p~il~iDEid~l~~~r~-~~~~~~~~~-~~~~Ll~~ld~l- 309 (733)
T TIGR01243 237 GAYFISINGPEIMSKYYGESEERLREIFKEAE----ENAPSIIFIDEIDAIAPKRE-EVTGEVEKR-VVAQLLTLMDGL- 309 (733)
T ss_pred CCeEEEEecHHHhcccccHHHHHHHHHHHHHH----hcCCcEEEeehhhhhccccc-CCcchHHHH-HHHHHHHHhhcc-
Confidence 44567788889999999998888887776664 45679999999998443322 111111122 233444444321
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccc--ccCcCCccchhhhhcccccCCCC-hHHHHHHhhhCCC
Q 022739 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFPG 158 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKF--YW~Ptred~i~iv~~if~~Dg~~-~~dv~~LVd~Fp~ 158 (293)
....+|-||.|.|....|=..|.|-||.++- ..-|+.++|..|++...+.-.++ ..++..|+...++
T Consensus 310 ----------~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G 379 (733)
T TIGR01243 310 ----------KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHG 379 (733)
T ss_pred ----------ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCC
Confidence 0123566676889888876568888998653 45699999999988655543333 3346666666555
No 18
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=89.96 E-value=0.98 Score=44.59 Aligned_cols=123 Identities=28% Similarity=0.430 Sum_probs=81.0
Q ss_pred CCchHHHHHHHHHHHHHHhcccceEEEeecccc-cCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCC
Q 022739 19 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 97 (293)
Q Consensus 19 GeParLIR~RYReAae~ik~GkM~~L~INDLDA-G~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RV 97 (293)
|+-+||.|. |..+-|.-+.|.+||..||| |.-||++.-.---.=|-..-.|.|. |-|- +...||
T Consensus 247 GdGAkLVRD----AFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ--------LDGF---ss~~~v 311 (424)
T KOG0652|consen 247 GDGAKLVRD----AFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ--------LDGF---SSDDRV 311 (424)
T ss_pred cchHHHHHH----HHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh--------hcCC---CCccce
Confidence 588999875 55566778899999999999 8999974222222223334456664 4442 234577
Q ss_pred CEEEecCCccccccccccCCCccccc--cCcCCccchhhhh----cccccCCCChHHHHHHhhhC
Q 022739 98 PIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVCK----GIFRNDNVADDDIVKLVDTF 156 (293)
Q Consensus 98 PIIVTGNDfStLYAPLiRDGRMeKFY--W~Ptred~i~iv~----~if~~Dg~~~~dv~~LVd~F 156 (293)
-+|..-|----|=--|.|.||.|.=. =-|+.+-|..|.+ .|--.|.+.-+++.+--|.|
T Consensus 312 KviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddF 376 (424)
T KOG0652|consen 312 KVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDF 376 (424)
T ss_pred EEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhccccc
Confidence 77777776655555599999999632 2377777777763 34445667777777666633
No 19
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=88.48 E-value=0.97 Score=45.07 Aligned_cols=106 Identities=28% Similarity=0.429 Sum_probs=75.8
Q ss_pred ccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccc-cCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCc
Q 022739 10 AGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM 88 (293)
Q Consensus 10 AGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDA-G~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~ 88 (293)
+.||--..-||-.||.||=+|-|-++ -.|.+||..||| |--||+.+.--.-.=|-..-.|.| ||.|
T Consensus 252 GseLiQkylGdGpklvRqlF~vA~e~----apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLN--------QldG- 318 (440)
T KOG0726|consen 252 GSELIQKYLGDGPKLVRELFRVAEEH----APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN--------QLDG- 318 (440)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHhc----CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHH--------hccC-
Confidence 34555666789999999999988775 579999999999 777886433222222333335666 4544
Q ss_pred CCCCCCCCCCEEEecCCccccccccccCCCccccccCcCCcc
Q 022739 89 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 130 (293)
Q Consensus 89 y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~Ptred 130 (293)
|++ ...|-+|..-|-..+|=--|||-||.|+=.-=|..++
T Consensus 319 Fds--rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe 358 (440)
T KOG0726|consen 319 FDS--RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 358 (440)
T ss_pred ccc--cCCeEEEEecccccccCHhhcCCCccccccccCCCch
Confidence 332 4578999999999999888999999997554455554
No 20
>PRK04195 replication factor C large subunit; Provisional
Probab=87.58 E-value=2.8 Score=41.05 Aligned_cols=126 Identities=21% Similarity=0.282 Sum_probs=78.4
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHh-cc-cceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KG-KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 79 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik-~G-kM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDn 79 (293)
|.+.+.+.|+... ....|++.-.+++..-. .| +-.||+|.++|.=.+.-+ . +- ...|.++..+
T Consensus 64 ~~~~ielnasd~r------~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d---~-----~~-~~aL~~~l~~ 128 (482)
T PRK04195 64 GWEVIELNASDQR------TADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED---R-----GG-ARAILELIKK 128 (482)
T ss_pred CCCEEEEcccccc------cHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc---h-----hH-HHHHHHHHHc
Confidence 5566666665322 23467776666666544 44 678999999985333111 0 11 1234444432
Q ss_pred CCccCCCCcCCCCCCCCCCEEEecCCcccccc-ccccCCCccccccCcCCccchhhhhcccccCCC--ChHHHHHHhhhC
Q 022739 80 PTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNV--ADDDIVKLVDTF 156 (293)
Q Consensus 80 Pt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYA-PLiRDGRMeKFYW~Ptred~i~iv~~if~~Dg~--~~~dv~~LVd~F 156 (293)
.+.|||+|.||...+-. +|.+-+..=.|. .|+.+++..++..+++..|+ +.+.+..|+...
T Consensus 129 ---------------~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~-~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s 192 (482)
T PRK04195 129 ---------------AKQPIILTANDPYDPSLRELRNACLMIEFK-RLSTRSIVPVLKRICRKEGIECDDEALKEIAERS 192 (482)
T ss_pred ---------------CCCCEEEeccCccccchhhHhccceEEEec-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 34699999999876654 454434333322 27788899999999987774 577888888876
Q ss_pred CC
Q 022739 157 PG 158 (293)
Q Consensus 157 p~ 158 (293)
.+
T Consensus 193 ~G 194 (482)
T PRK04195 193 GG 194 (482)
T ss_pred CC
Confidence 54
No 21
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.25 E-value=0.66 Score=47.02 Aligned_cols=138 Identities=22% Similarity=0.366 Sum_probs=84.9
Q ss_pred cceEEEeecccccCCcCCCCcceeecchh----h-hhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCccccccccc
Q 022739 40 KMCCLMINDLDAGAGRMGGTTQYTVNNQM----V-NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 114 (293)
Q Consensus 40 kM~~L~INDLDAG~Grf~~~TQ~TVNnQ~----V-~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLi 114 (293)
-=|+|+|-|||+.+=--+.+.+-+.+-|- | =.-|.| -+-|-|...-..|| ||.|=|-.-.|=.-||
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLN--------fiDGlwSscg~ERI-ivFTTNh~EkLDPALl 356 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLN--------FLDGLWSSCGDERI-IVFTTNHKEKLDPALL 356 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhh--------hhccccccCCCceE-EEEecCChhhcCHhhc
Confidence 34899999999986433323343444442 1 111344 24477888766776 7778888888877799
Q ss_pred cCCCccccccCcCCccchhhhhcccccCCCChHHHHHHhhhCCCCcchhHhhhhhhhhhHHHHHHHhhh--ccccccccc
Q 022739 115 RDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV--GVGSIGKSL 192 (293)
Q Consensus 115 RDGRMeKFYW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q~iDFFGALRaR~YDd~Vr~wi~~v--G~e~ig~~l 192 (293)
|-||||.- |+- .--+.+.+.+|...|=+.+= =.++|++ |-+.+.++ ---.|+..|
T Consensus 357 RpGRmDmh---------------I~m-gyCtf~~fK~La~nYL~~~~------~h~L~~e-ie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 357 RPGRMDMH---------------IYM-GYCTFEAFKTLASNYLGIEE------DHRLFDE-IERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCCcceeE---------------EEc-CCCCHHHHHHHHHHhcCCCC------CcchhHH-HHHHhhcCccCHHHHHHHH
Confidence 99999972 111 12457788888888877732 2344444 33366554 344567777
Q ss_pred ccCCCCCCcccCCcCCHHHHHHH
Q 022739 193 VNSKEAAPTFEQPRMTMEKLLEY 215 (293)
Q Consensus 193 vns~~~~p~f~~p~~tl~~Lle~ 215 (293)
+.++. -++-.|+.|++.
T Consensus 414 m~~~~------dad~~lk~Lv~~ 430 (457)
T KOG0743|consen 414 MKNKN------DADVALKGLVEA 430 (457)
T ss_pred hhccc------cHHHHHHHHHHH
Confidence 76654 345556666553
No 22
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=85.25 E-value=2.8 Score=43.74 Aligned_cols=140 Identities=21% Similarity=0.382 Sum_probs=82.5
Q ss_pred CCcceeecccccC---------CCCCCC-chHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhh
Q 022739 2 GINPIMMSAGELE---------SGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNA 71 (293)
Q Consensus 2 Gi~pI~mSAGELE---------s~~AGe-ParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~a 71 (293)
|..-+.++.|.+. +.+.|. |++++ +..++| ..+-+++||..+|.=...+.+. ...
T Consensus 372 ~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~-~~l~~~-----~~~~~villDEidk~~~~~~~~---------~~~ 436 (775)
T TIGR00763 372 NRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRII-QGLKKA-----KTKNPLFLLDEIDKIGSSFRGD---------PAS 436 (775)
T ss_pred cCCeEEEeCCCcccHHHHcCCCCceeCCCCchHH-HHHHHh-----CcCCCEEEEechhhcCCccCCC---------HHH
Confidence 3445566666543 234555 55543 443333 2233589999999755332211 234
Q ss_pred hhhhhccCCCccCCCCcCCC--CCCCCCCEEEecCCccccccccccCCCccccccC-cCCccchhhhhccc---------
Q 022739 72 TLMNIADNPTCVQLPGMYNK--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIF--------- 139 (293)
Q Consensus 72 TLMNiaDnPt~Vqlpg~y~~--~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~-Ptred~i~iv~~if--------- 139 (293)
.|..+-|...+-.+-..|-. -+...|.+|.|.|...++-.||.+ ||+-+... |+.+++..|++...
T Consensus 437 aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~ 514 (775)
T TIGR00763 437 ALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RMEVIELSGYTEEEKLEIAKKYLIPKALEDHG 514 (775)
T ss_pred HHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--CeeEEecCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 56666663222222222221 245688999999999999888875 89877766 57788888886533
Q ss_pred -ccC--CCChHHHHHHhhhCCC
Q 022739 140 -RND--NVADDDIVKLVDTFPG 158 (293)
Q Consensus 140 -~~D--g~~~~dv~~LVd~Fp~ 158 (293)
..+ .++.+.+..|+..|-.
T Consensus 515 l~~~~~~~~~~~l~~i~~~~~~ 536 (775)
T TIGR00763 515 LKPDELKITDEALLLLIKYYTR 536 (775)
T ss_pred CCcceEEECHHHHHHHHHhcCh
Confidence 111 3566777777776553
No 23
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=85.10 E-value=3.4 Score=37.01 Aligned_cols=109 Identities=21% Similarity=0.316 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHh-cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEE
Q 022739 22 AKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 100 (293)
Q Consensus 22 arLIR~RYReAae~ik-~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPII 100 (293)
-..||..-.+.+.... .+.-.+|+|.|+|.. +. --.+..|.++-++| ...++||
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l----~~--------~~~~~~L~~~le~~-------------~~~~~~I 135 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRL----GL--------ADAQRHLRSFMEAY-------------SKNCSFI 135 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccc----cC--------HHHHHHHHHHHHhc-------------CCCceEE
Confidence 3456665555555444 567789999999753 11 01234455544433 2467999
Q ss_pred EecCCccccccccccCCCcccccc-CcCCccchhhhhc-------ccccCCCC--hHHHHHHhhhCC
Q 022739 101 VTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKG-------IFRNDNVA--DDDIVKLVDTFP 157 (293)
Q Consensus 101 VTGNDfStLYAPLiRDGRMeKFYW-~Ptred~i~iv~~-------if~~Dg~~--~~dv~~LVd~Fp 157 (293)
+|.|+.+.+..+|.. |...+.. .|+.+++..+++. +++..|++ ++.+..|+...-
T Consensus 136 lt~n~~~~l~~~l~s--R~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 136 ITANNKNGIIEPLRS--RCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF 200 (316)
T ss_pred EEcCChhhchHHHHh--hceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC
Confidence 999999988887765 5567777 7888888766443 34445543 445566665443
No 24
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=83.58 E-value=1.1 Score=39.95 Aligned_cols=110 Identities=17% Similarity=0.227 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHh-cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEE
Q 022739 23 KLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 101 (293)
Q Consensus 23 rLIR~RYReAae~ik-~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIV 101 (293)
.++|+-.++++.... .++..+|+|.|+| .+....|. .|-.+-+++ .+.+.+|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~vlilDe~~----~l~~~~~~---------~L~~~le~~-------------~~~~~~Il 160 (337)
T PRK12402 107 DNFKHVLKEYASYRPLSADYKTILLDNAE----ALREDAQQ---------ALRRIMEQY-------------SRTCRFII 160 (337)
T ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCcc----cCCHHHHH---------HHHHHHHhc-------------cCCCeEEE
Confidence 345544445544433 4556689999987 33211111 122222222 12345788
Q ss_pred ecCCccccccccccCCCccccccCcCCccchhhhhcccccCCC--ChHHHHHHhhhCCCC
Q 022739 102 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNV--ADDDIVKLVDTFPGQ 159 (293)
Q Consensus 102 TGNDfStLYAPLiRDGRMeKFYW~Ptred~i~iv~~if~~Dg~--~~~dv~~LVd~Fp~Q 159 (293)
|++..+.++.||...+..=.|. .|+.++...++..+++..|+ +.+.++.|+...++.
T Consensus 161 ~~~~~~~~~~~L~sr~~~v~~~-~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gd 219 (337)
T PRK12402 161 ATRQPSKLIPPIRSRCLPLFFR-APTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGD 219 (337)
T ss_pred EeCChhhCchhhcCCceEEEec-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 8887888888887655443333 36778999999999888774 588899999998774
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.88 E-value=3.9 Score=40.62 Aligned_cols=113 Identities=26% Similarity=0.446 Sum_probs=77.5
Q ss_pred eeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccc-cCCcCCCC--cceeecchhhhhhhhhhccCCCc
Q 022739 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGT--TQYTVNNQMVNATLMNIADNPTC 82 (293)
Q Consensus 6 I~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDA-G~Grf~~~--TQ~TVNnQ~V~aTLMNiaDnPt~ 82 (293)
|.+-+.||-...-||-||+.|+= .+|-+.-|.|.+|...+|| |--||+++ .-..| |-..-.|.|.
T Consensus 240 irvigselvqkyvgegarmvrel----f~martkkaciiffdeidaiggarfddg~ggdnev--qrtmleli~q------ 307 (435)
T KOG0729|consen 240 IRVIGSELVQKYVGEGARMVREL----FEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEV--QRTMLELINQ------ 307 (435)
T ss_pred EeehhHHHHHHHhhhhHHHHHHH----HHHhcccceEEEEeeccccccCccccCCCCCcHHH--HHHHHHHHHh------
Confidence 45566777778889999998754 4677888999999999999 55588642 22222 3333345664
Q ss_pred cCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccc-c-cCcCCccchhhh
Q 022739 83 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF-Y-WAPTREDRIGVC 135 (293)
Q Consensus 83 Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKF-Y-W~Ptred~i~iv 135 (293)
|-| |+ +...+-+...-|-.-||=--|.|-||.|.= - --|.-|.|..|.
T Consensus 308 --ldg-fd--prgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~ 357 (435)
T KOG0729|consen 308 --LDG-FD--PRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIF 357 (435)
T ss_pred --ccC-CC--CCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeE
Confidence 333 22 233456677889999998889999999852 1 238888887665
No 26
>CHL00181 cbbX CbbX; Provisional
Probab=71.67 E-value=3 Score=38.65 Aligned_cols=145 Identities=17% Similarity=0.288 Sum_probs=75.1
Q ss_pred eeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCC
Q 022739 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 85 (293)
Q Consensus 6 I~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vql 85 (293)
+.+|+.+|.+...|+=++.++.-..+| .| ++|||.++|. .++-++.+.+ +.-+..+|..+-++..
T Consensus 95 ~~v~~~~l~~~~~g~~~~~~~~~l~~a-----~g--gVLfIDE~~~-l~~~~~~~~~---~~e~~~~L~~~me~~~---- 159 (287)
T CHL00181 95 LTVTRDDLVGQYIGHTAPKTKEVLKKA-----MG--GVLFIDEAYY-LYKPDNERDY---GSEAIEILLQVMENQR---- 159 (287)
T ss_pred EEecHHHHHHHHhccchHHHHHHHHHc-----cC--CEEEEEccch-hccCCCccch---HHHHHHHHHHHHhcCC----
Confidence 455555666655555443333322222 34 6999999985 1111111111 1334457766555421
Q ss_pred CCcCCCCCCCCCCEEEecCCc--cccc--cc-cccCCCccc-cccC-cCCccchhhhhcccccCC--CChHHHHHHhhhC
Q 022739 86 PGMYNKEENPRVPIIVTGNDF--STLY--AP-LIRDGRMEK-FYWA-PTREDRIGVCKGIFRNDN--VADDDIVKLVDTF 156 (293)
Q Consensus 86 pg~y~~~~~~RVPIIVTGNDf--StLY--AP-LiRDGRMeK-FYW~-Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~F 156 (293)
..+=||.+|+.- ..+| -| |.+ |++. ++.. ++.+++..|+..+++..+ ++.+....|.+.+
T Consensus 160 ---------~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i 228 (287)
T CHL00181 160 ---------DDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYI 228 (287)
T ss_pred ---------CCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 345578888632 1223 14 433 6652 3333 567789999988887654 5566555555543
Q ss_pred CCCc-chhHhhhhhhhhhHHHHHHHhh
Q 022739 157 PGQS-IDFFGALRARVYDDEVRKWISG 182 (293)
Q Consensus 157 p~Q~-iDFFGALRaR~YDd~Vr~wi~~ 182 (293)
-.+. .+.||-.| .||.+|.+
T Consensus 229 ~~~~~~~~~GNaR------~vrn~ve~ 249 (287)
T CHL00181 229 KKRMEQPLFANAR------SVRNALDR 249 (287)
T ss_pred HHhCCCCCCccHH------HHHHHHHH
Confidence 3222 24555433 35555544
No 27
>CHL00206 ycf2 Ycf2; Provisional
Probab=66.15 E-value=6.7 Score=46.52 Aligned_cols=93 Identities=12% Similarity=0.123 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCC
Q 022739 26 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 105 (293)
Q Consensus 26 R~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGND 105 (293)
|.|=|..-+..|+-..|++||-+|||=... +. .. ...+.|+|.-| |.-.......|=||.+=|-
T Consensus 1718 ~~rIr~lFelARk~SPCIIFIDEIDaL~~~-ds--~~-----ltL~qLLneLD--------g~~~~~s~~~VIVIAATNR 1781 (2281)
T CHL00206 1718 RFYITLQFELAKAMSPCIIWIPNIHDLNVN-ES--NY-----LSLGLLVNSLS--------RDCERCSTRNILVIASTHI 1781 (2281)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEchhhcCCC-cc--ce-----ehHHHHHHHhc--------cccccCCCCCEEEEEeCCC
Confidence 345677777778888999999999997654 21 11 12344555333 2211123456777888888
Q ss_pred ccccccccccCCCcccccc-----CcCCccchhh
Q 022739 106 FSTLYAPLIRDGRMEKFYW-----APTREDRIGV 134 (293)
Q Consensus 106 fStLYAPLiRDGRMeKFYW-----~Ptred~i~i 134 (293)
.-.|=.-|+|-||.|+-.- .|.|++++.+
T Consensus 1782 PD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~I 1815 (2281)
T CHL00206 1782 PQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFT 1815 (2281)
T ss_pred cccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHH
Confidence 8888777999999998765 2455554443
No 28
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=62.14 E-value=8.9 Score=40.75 Aligned_cols=122 Identities=18% Similarity=0.324 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhh-hccCCCccCCCCcCCCCCCCCCCEEEecC
Q 022739 26 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMN-IADNPTCVQLPGMYNKEENPRVPIIVTGN 104 (293)
Q Consensus 26 R~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMN-iaDnPt~Vqlpg~y~~~~~~RVPIIVTGN 104 (293)
.+|.+...+.+++.+-++|||.+++.=+|.=+. -.+|+-.+.++. +- ...++.+|-+.|
T Consensus 264 e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~-----~~g~~d~~nlLkp~L---------------~~g~i~vIgATt 323 (758)
T PRK11034 264 EKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA-----SGGQVDAANLIKPLL---------------SSGKIRVIGSTT 323 (758)
T ss_pred HHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC-----CCcHHHHHHHHHHHH---------------hCCCeEEEecCC
Confidence 345566666666556679999999953332110 112322222221 11 134678887776
Q ss_pred C--cc---ccccccccCCCccccccC-cCCccchhhhhcccc------cCCCChHHHHHHhh---------hCCCCcchh
Q 022739 105 D--FS---TLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFR------NDNVADDDIVKLVD---------TFPGQSIDF 163 (293)
Q Consensus 105 D--fS---tLYAPLiRDGRMeKFYW~-Ptred~i~iv~~if~------~Dg~~~~dv~~LVd---------~Fp~Q~iDF 163 (293)
- +. .+=..|.| |.++++-. |+.++++.|++++-. .=.++.+.++..|+ .||+.+||+
T Consensus 324 ~~E~~~~~~~D~AL~r--RFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidl 401 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401 (758)
T ss_pred hHHHHHHhhccHHHHh--hCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHH
Confidence 3 22 23344766 87777654 999999999987632 22456777766653 578899999
Q ss_pred Hhhhhh
Q 022739 164 FGALRA 169 (293)
Q Consensus 164 FGALRa 169 (293)
.--.-|
T Consensus 402 ldea~a 407 (758)
T PRK11034 402 IDEAGA 407 (758)
T ss_pred HHHHHH
Confidence 854433
No 29
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=61.69 E-value=11 Score=40.26 Aligned_cols=135 Identities=21% Similarity=0.299 Sum_probs=96.8
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhccc-ceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~Gk-M~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
|+.-..+++.||=+.-+||-.+.+|.=+.+| .+.+ .+++||-+||+=++.-. .++- +--=|.++||-+.|.=
T Consensus 243 ~a~~~~i~~peli~k~~gEte~~LR~~f~~a----~k~~~psii~IdEld~l~p~r~-~~~~--~e~Rv~sqlltL~dg~ 315 (693)
T KOG0730|consen 243 GAFLFLINGPELISKFPGETESNLRKAFAEA----LKFQVPSIIFIDELDALCPKRE-GADD--VESRVVSQLLTLLDGL 315 (693)
T ss_pred CceeEecccHHHHHhcccchHHHHHHHHHHH----hccCCCeeEeHHhHhhhCCccc-ccch--HHHHHHHHHHHHHhhC
Confidence 4566778899999999999988887655544 5667 99999999999888654 2333 3444668888888753
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccc--cccCcCCccchhhhhcccccCCCC-hHHHHHHhhh
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVA-DDDIVKLVDT 155 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeK--FYW~Ptred~i~iv~~if~~Dg~~-~~dv~~LVd~ 155 (293)
. .-..|=+|-|-|-.-+|=--|-| ||-|+ +.=-|+.++|..|+.-+++.=+.. ..|.+.+-..
T Consensus 316 ~-----------~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~ 381 (693)
T KOG0730|consen 316 K-----------PDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVS 381 (693)
T ss_pred c-----------CcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 3 12344455566666666666777 99876 445699999999999999887776 4555555433
No 30
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=59.17 E-value=5.1 Score=42.74 Aligned_cols=158 Identities=27% Similarity=0.441 Sum_probs=106.5
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCC-Cc--ceeecchhhhhhhhhhcc
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGG-TT--QYTVNNQMVNATLMNIAD 78 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~-~T--Q~TVNnQ~V~aTLMNiaD 78 (293)
|+|-+-+++=||=|.|=||--|.||+=+|+|-+. -.|++|..-|||=+|.=++ .+ +--|=||+. |-||
T Consensus 493 ~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~----aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLL--tEmD--- 563 (693)
T KOG0730|consen 493 GMNFLSVKGPELFSKYVGESERAIREVFRKARQV----APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLL--TEMD--- 563 (693)
T ss_pred cCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhc----CCeEEehhhHHhHhhccCCCccchHHHHHHHHH--HHcc---
Confidence 5677889999999999999999999999988544 4699999999997776643 22 333333433 3332
Q ss_pred CCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccccC--cCCccchhhhhcccccCCCChH-HHHHHhhh
Q 022739 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD-DIVKLVDT 155 (293)
Q Consensus 79 nPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~--Ptred~i~iv~~if~~Dg~~~~-dv~~LVd~ 155 (293)
|. +....|=||--=|-.-.|=.-|+|-||.|+-..= |..+-|..|++.-.++=.++++ |+++|+..
T Consensus 564 --------G~---e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~ 632 (693)
T KOG0730|consen 564 --------GL---EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQA 632 (693)
T ss_pred --------cc---cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 11 2235677777777777777779999999997665 6777788888777776666655 66666653
Q ss_pred CCCCcchhHhhhhhhhhhHHHHHHHhhh
Q 022739 156 FPGQSIDFFGALRARVYDDEVRKWISGV 183 (293)
Q Consensus 156 Fp~Q~iDFFGALRaR~YDd~Vr~wi~~v 183 (293)
=-+ |-||==.-+.-++-.-|+++.
T Consensus 633 T~g----~SGAel~~lCq~A~~~a~~e~ 656 (693)
T KOG0730|consen 633 TEG----YSGAEIVAVCQEAALLALRES 656 (693)
T ss_pred hcc----CChHHHHHHHHHHHHHHHHHh
Confidence 221 334422233344445565553
No 31
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=57.87 E-value=14 Score=39.97 Aligned_cols=206 Identities=24% Similarity=0.354 Sum_probs=124.7
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
|+|-|-+-+=||=+-|-||--|-+|+=+..| +.--.|++|..-|||=.-|=+.. --. +...+||.-
T Consensus 570 g~NFisVKGPELlNkYVGESErAVR~vFqRA----R~saPCVIFFDEiDaL~p~R~~~-~s~-----~s~RvvNqL---- 635 (802)
T KOG0733|consen 570 GANFISVKGPELLNKYVGESERAVRQVFQRA----RASAPCVIFFDEIDALVPRRSDE-GSS-----VSSRVVNQL---- 635 (802)
T ss_pred cCceEeecCHHHHHHHhhhHHHHHHHHHHHh----hcCCCeEEEecchhhcCcccCCC-Cch-----hHHHHHHHH----
Confidence 6778888888999999999999999988776 45679999999999988777531 112 222333310
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccccC--cCCccchhhhhccccc------CCCChHHHHHHh
Q 022739 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN------DNVADDDIVKLV 153 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~--Ptred~i~iv~~if~~------Dg~~~~dv~~LV 153 (293)
.+-+-| -++..-|=||-.-|-.--+=.-++|-||.||-.+= |+-+||+.|++.+-+. +.+.-++|.+.-
T Consensus 636 LtElDG---l~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~ 712 (802)
T KOG0733|consen 636 LTELDG---LEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNT 712 (802)
T ss_pred HHHhcc---cccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcc
Confidence 012222 12344555666666665555669999999996664 9999999999999882 223334444443
Q ss_pred h--hCCCCcch------hHhhhhhhhhhHHHHHHHhhhcccccccccccCCCCCCcccCCcCCHHHHHHHHHHH---HHH
Q 022739 154 D--TFPGQSID------FFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI---VQE 222 (293)
Q Consensus 154 d--~Fp~Q~iD------FFGALRaR~YDd~Vr~wi~~vG~e~ig~~lvns~~~~p~f~~p~~tl~~Lle~G~~l---v~E 222 (293)
. -|-|--|- =+-|||.++.+-. .+.+.++-+. .+-..|..|+-|+=..+ +.|
T Consensus 713 ~c~gftGADLaaLvreAsi~AL~~~~~~~~-------~~~~~~~~~~----------~~~~~t~~hF~eA~~~i~pSv~~ 775 (802)
T KOG0733|consen 713 KCEGFTGADLAALVREASILALRESLFEID-------SSEDDVTVRS----------STIIVTYKHFEEAFQRIRPSVSE 775 (802)
T ss_pred cccCCchhhHHHHHHHHHHHHHHHHHhhcc-------ccCcccceee----------eeeeecHHHHHHHHHhcCCCccH
Confidence 3 34433221 2346666665211 1222222111 01233444555544444 568
Q ss_pred HHHHhhhhhHHHHhccccc
Q 022739 223 QENVKRVQLADKYLSEAAL 241 (293)
Q Consensus 223 Qe~V~~~~Ls~eYl~~a~l 241 (293)
|++.+-=+|.+.|=-..++
T Consensus 776 ~dr~~Yd~l~k~~~L~~~~ 794 (802)
T KOG0733|consen 776 RDRKKYDRLNKSRSLSTAT 794 (802)
T ss_pred HHHHHHHHHhhhhcccccC
Confidence 8888888888776433333
No 32
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=49.48 E-value=27 Score=32.18 Aligned_cols=122 Identities=12% Similarity=0.224 Sum_probs=59.2
Q ss_pred ceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccC
Q 022739 5 PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQ 84 (293)
Q Consensus 5 pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vq 84 (293)
.+.+++-+|-+...|+.+..+++-..+| .| ++|||.++|.=.+.-+ .+.+ ++-+..+|.++-++..
T Consensus 93 ~v~v~~~~l~~~~~g~~~~~~~~~~~~a-----~~--gvL~iDEi~~L~~~~~-~~~~---~~~~~~~Ll~~le~~~--- 158 (284)
T TIGR02880 93 LVSVTRDDLVGQYIGHTAPKTKEILKRA-----MG--GVLFIDEAYYLYRPDN-ERDY---GQEAIEILLQVMENQR--- 158 (284)
T ss_pred EEEecHHHHhHhhcccchHHHHHHHHHc-----cC--cEEEEechhhhccCCC-ccch---HHHHHHHHHHHHhcCC---
Confidence 3445555666666676654444322222 34 7999999985322211 1111 2334455666655431
Q ss_pred CCCcCCCCCCCCCCEEEecCCc--cccc--cc-cccCCCcc-ccccC-cCCccchhhhhcccccCC--CChHHHHHH
Q 022739 85 LPGMYNKEENPRVPIIVTGNDF--STLY--AP-LIRDGRME-KFYWA-PTREDRIGVCKGIFRNDN--VADDDIVKL 152 (293)
Q Consensus 85 lpg~y~~~~~~RVPIIVTGNDf--StLY--AP-LiRDGRMe-KFYW~-Ptred~i~iv~~if~~Dg--~~~~dv~~L 152 (293)
.++=||++|+-- -.+| .| |.+ |.. ++... ++.+|+..|++.+++..+ ++.+.+..|
T Consensus 159 ----------~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L 223 (284)
T TIGR02880 159 ----------DDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAF 223 (284)
T ss_pred ----------CCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 344577777521 1111 12 111 322 12222 456777777777776643 344444333
No 33
>PF04611 AalphaY_MDB: Mating type protein A alpha Y mating type dependent binding region ; InterPro: IPR007689 Mating-type protein A-alpha specifies the A-alpha-Y mating type. The A-alpha-Y protein binds to the AalphaZ protein of another mating type in Schizophyllum commune [] and may also regulate gene expression of the homokaryotic cell.; GO: 0006355 regulation of transcription, DNA-dependent, 0019953 sexual reproduction
Probab=48.52 E-value=14 Score=32.84 Aligned_cols=24 Identities=33% Similarity=0.760 Sum_probs=21.3
Q ss_pred cchhHhhhhhhhhhHHHHHHHhhh
Q 022739 160 SIDFFGALRARVYDDEVRKWISGV 183 (293)
Q Consensus 160 ~iDFFGALRaR~YDd~Vr~wi~~v 183 (293)
-+-.|.+||-|+|-+||.+|.-+|
T Consensus 99 Nlhll~~LR~rlyt~QVekW~~qV 122 (147)
T PF04611_consen 99 NLHLLNQLRFRLYTQQVEKWLWQV 122 (147)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355799999999999999999876
No 34
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=48.12 E-value=23 Score=31.59 Aligned_cols=136 Identities=20% Similarity=0.239 Sum_probs=64.6
Q ss_pred eeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCC
Q 022739 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 85 (293)
Q Consensus 6 I~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vql 85 (293)
+.+++-+|-+.+-|+=++.++ +++++-.-++|||.++|. ..+ + .+... ++-+..+|++.-++-
T Consensus 78 v~~~~~~l~~~~~g~~~~~~~-------~~~~~a~~~VL~IDE~~~-L~~-~--~~~~~-~~~~i~~Ll~~~e~~----- 140 (261)
T TIGR02881 78 IEVERADLVGEYIGHTAQKTR-------EVIKKALGGVLFIDEAYS-LAR-G--GEKDF-GKEAIDTLVKGMEDN----- 140 (261)
T ss_pred EEecHHHhhhhhccchHHHHH-------HHHHhccCCEEEEechhh-hcc-C--Cccch-HHHHHHHHHHHHhcc-----
Confidence 334444555555555444333 334321226999999985 111 1 11111 222334566655441
Q ss_pred CCcCCCCCCCCCCEEEecC-----CccccccccccCCCcccccc--CcCCccchhhhhcccccCC--CChHHHHHHhhhC
Q 022739 86 PGMYNKEENPRVPIIVTGN-----DFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VADDDIVKLVDTF 156 (293)
Q Consensus 86 pg~y~~~~~~RVPIIVTGN-----DfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~F 156 (293)
...+-+|++|+ .|..+-.+|.+ |+..... .++.+++..|++.+++..+ ++++.+..|.+.+
T Consensus 141 --------~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~ 210 (261)
T TIGR02881 141 --------RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHL 210 (261)
T ss_pred --------CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Confidence 12234555663 22223233432 5533122 2467888888888887664 4455444443332
Q ss_pred ---CCCcchhHhhhh
Q 022739 157 ---PGQSIDFFGALR 168 (293)
Q Consensus 157 ---p~Q~iDFFGALR 168 (293)
+....+-||-.|
T Consensus 211 ~~~~~~~~~~~gn~R 225 (261)
T TIGR02881 211 YKVDQLSSREFSNAR 225 (261)
T ss_pred HHHHhccCCCCchHH
Confidence 322345555544
No 35
>PF12157 DUF3591: Protein of unknown function (DUF3591); InterPro: IPR022591 This functionally uncharacterised domain is found centrally in the eukaryotic transcription initiation factor TFIID subunit 1.
Probab=47.74 E-value=40 Score=34.39 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=59.2
Q ss_pred hhhcccccCCCChHHHHHHhhhCCCCcchhHhhhhhhhhhHHHHHHHhhh-cccc----cccccccCCCCCCcccCCc--
Q 022739 134 VCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVGS----IGKSLVNSKEAAPTFEQPR-- 206 (293)
Q Consensus 134 iv~~if~~Dg~~~~dv~~LVd~Fp~Q~iDFFGALRaR~YDd~Vr~wi~~v-G~e~----ig~~lvns~~~~p~f~~p~-- 206 (293)
++..+|..++-.+=-+..|...||+|+ |-+||+++++. -..+ -+--.+++....|.-+.-+
T Consensus 246 ~iyRlf~~~~~~ri~~~di~~~Fp~~s------------e~~iRkrLKe~~~~~R~g~~~~~W~lk~~~~lp~eeelr~m 313 (457)
T PF12157_consen 246 IIYRLFNKSQPRRIKVDDIKKHFPDQS------------ESQIRKRLKEFADFQRTGDDSGWWVLKPGFRLPDEEELRKM 313 (457)
T ss_pred HHHHHHhhccCCccCHHHHHHhCCCCc------------HHHHHHHHHHHHhccCCCCCCCeEEECCCCCCCCHHHHHhh
Confidence 457788866555556667778899996 67888888876 2211 1222334444455554333
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhHHHHhc
Q 022739 207 MTMEKLLEYGNMIVQEQENVKRVQLADKYLS 237 (293)
Q Consensus 207 ~tl~~Lle~G~~lv~EQe~V~~~~Ls~eYl~ 237 (293)
+|.|..-.+=-|++.||.. ++..+......
T Consensus 314 vtPE~vC~~eSM~ag~~rL-~D~G~~~~~~~ 343 (457)
T PF12157_consen 314 VTPEDVCAYESMQAGEQRL-KDAGYGELSEF 343 (457)
T ss_pred CCHHHHHHHHHHHHHHHHH-HhcCCcccccc
Confidence 8889888888889988865 66666555444
No 36
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=47.06 E-value=11 Score=37.34 Aligned_cols=119 Identities=29% Similarity=0.440 Sum_probs=74.9
Q ss_pred ceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccC-Cc-C---CCCcceeecchhhhhhhhhhccC
Q 022739 5 PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA-GR-M---GGTTQYTVNNQMVNATLMNIADN 79 (293)
Q Consensus 5 pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~-Gr-f---~~~TQ~TVNnQ~V~aTLMNiaDn 79 (293)
-+.|-|-||=-+--|+-+|.||+=|-.|.++ -.|++||..|||=+ -| + .|.. -.+|||-|-|+---
T Consensus 179 ~l~vkat~liGehVGdgar~Ihely~rA~~~----aPcivFiDE~DAiaLdRryQelRGDV-----sEiVNALLTelDgi 249 (368)
T COG1223 179 LLLVKATELIGEHVGDGARRIHELYERARKA----APCIVFIDELDAIALDRRYQELRGDV-----SEIVNALLTELDGI 249 (368)
T ss_pred eEEechHHHHHHHhhhHHHHHHHHHHHHHhc----CCeEEEehhhhhhhhhhhHHHhcccH-----HHHHHHHHHhccCc
Confidence 3567777888888999999999999988765 58999999999943 22 1 1111 24788888876310
Q ss_pred CCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc-CcCCccchhhhhcccccCCCChHHHHHHhhhCCC
Q 022739 80 PTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 158 (293)
Q Consensus 80 Pt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW-~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~ 158 (293)
.++--|=-|..-|- -.|.-|-||.---+..=+ =|+-|+|..|+ +..+.+||-
T Consensus 250 ------------~eneGVvtIaaTN~-p~~LD~aiRsRFEeEIEF~LP~~eEr~~il--------------e~y~k~~Pl 302 (368)
T COG1223 250 ------------KENEGVVTIAATNR-PELLDPAIRSRFEEEIEFKLPNDEERLEIL--------------EYYAKKFPL 302 (368)
T ss_pred ------------ccCCceEEEeecCC-hhhcCHHHHhhhhheeeeeCCChHHHHHHH--------------HHHHHhCCC
Confidence 12223333333333 345667787643222211 28888888776 455667775
Q ss_pred C
Q 022739 159 Q 159 (293)
Q Consensus 159 Q 159 (293)
+
T Consensus 303 p 303 (368)
T COG1223 303 P 303 (368)
T ss_pred c
Confidence 4
No 37
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=44.02 E-value=20 Score=27.99 Aligned_cols=35 Identities=17% Similarity=0.478 Sum_probs=26.7
Q ss_pred CCCccccccCcCCccchhhhhcccccCCCChHHHHHHhhhCCCCcch
Q 022739 116 DGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSID 162 (293)
Q Consensus 116 DGRMeKFYW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q~iD 162 (293)
.|+||.||.+|+= .++ -|..||.+.+...|...+|
T Consensus 23 ~~k~DvyY~sP~G-kk~-----------RS~~ev~~yL~~~~~~~~~ 57 (77)
T cd01396 23 AGKFDVYYISPTG-KKF-----------RSKVELARYLEKNGPTSLD 57 (77)
T ss_pred CCcceEEEECCCC-CEE-----------ECHHHHHHHHHhCCCCCCc
Confidence 4899999999984 443 5788899998887755443
No 38
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=43.99 E-value=66 Score=34.69 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=98.4
Q ss_pred HHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCcccccccc
Q 022739 34 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 113 (293)
Q Consensus 34 e~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPL 113 (293)
+.+++..-|+|+|-++| .+. +-|...|+.+-|+-.-..--| +..+..+.-||+|-|-.+..+...
T Consensus 662 ~~v~~~p~svvllDEie----ka~---------~~v~~~Llq~ld~g~l~d~~G--r~vd~~n~iiI~TSNlg~~~~~~~ 726 (852)
T TIGR03345 662 EAVRRKPYSVVLLDEVE----KAH---------PDVLELFYQVFDKGVMEDGEG--REIDFKNTVILLTSNAGSDLIMAL 726 (852)
T ss_pred HHHHhCCCcEEEEechh----hcC---------HHHHHHHHHHhhcceeecCCC--cEEeccccEEEEeCCCchHHHHHh
Confidence 44567788999999997 222 234456777877754321111 233567899999999888766543
Q ss_pred ccCCC----ccc----------cccCcCCccchhhhhcccccCCCChHHHHHHhhhCCCCcchhHhhhhhh-----hhhH
Q 022739 114 IRDGR----MEK----------FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAR-----VYDD 174 (293)
Q Consensus 114 iRDGR----MeK----------FYW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q~iDFFGALRaR-----~YDd 174 (293)
.-+.. -++ -+|.|-.=.|+.|+ .|. .++.+++.++|+..-.+-..- |+.+ .+|+
T Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI--~F~--pLs~e~l~~Iv~~~L~~l~~r---l~~~~gi~l~i~d 799 (852)
T TIGR03345 727 CADPETAPDPEALLEALRPELLKVFKPAFLGRMTVI--PYL--PLDDDVLAAIVRLKLDRIARR---LKENHGAELVYSE 799 (852)
T ss_pred ccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEE--EeC--CCCHHHHHHHHHHHHHHHHHH---HHHhcCceEEECH
Confidence 32211 010 12455555555433 454 699999999998764432221 2222 5999
Q ss_pred HHHHHHhhhccc-ccccccccCCCCCCcccCCcCCHHHHHHHHHHHHHHHHHHhhhhhHHHHhcccccCc
Q 022739 175 EVRKWISGVGVG-SIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGE 243 (293)
Q Consensus 175 ~Vr~wi~~vG~e-~ig~~lvns~~~~p~f~~p~~tl~~Lle~G~~lv~EQe~V~~~~Ls~eYl~~a~l~d 243 (293)
++.+||.+.|.. ..|.| .|.+-=|....-.||+..|++.+-++
T Consensus 800 ~a~~~La~~g~~~~~GAR--------------------------~L~r~Ie~~i~~~la~~~l~~~~~~~ 843 (852)
T TIGR03345 800 ALVEHIVARCTEVESGAR--------------------------NIDAILNQTLLPELSRQILERLAAGE 843 (852)
T ss_pred HHHHHHHHHcCCCCCChH--------------------------HHHHHHHHHHHHHHHHHHHhChhcCC
Confidence 999999998764 33432 23333344455789999998876653
No 39
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=42.80 E-value=19 Score=25.41 Aligned_cols=51 Identities=16% Similarity=0.365 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcccccccccccCCCCC-CcccCCcCCHHHHHHHHHHHHHHHHHH
Q 022739 174 DEVRKWISGVGVGSIGKSLVNSKEAA-PTFEQPRMTMEKLLEYGNMIVQEQENV 226 (293)
Q Consensus 174 d~Vr~wi~~vG~e~ig~~lvns~~~~-p~f~~p~~tl~~Lle~G~~lv~EQe~V 226 (293)
++|.+|+..+|++.....+....=.- -.+ +.+|-+.|.+.|=.-...+..+
T Consensus 7 ~~v~~WL~~~gl~~y~~~f~~~~i~g~~~L--~~l~~~~L~~lGI~~~~~r~kl 58 (66)
T PF07647_consen 7 EDVAEWLKSLGLEQYADNFRENGIDGLEDL--LQLTEEDLKELGITNLGHRRKL 58 (66)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHTTCSHHHHH--TTSCHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHcCCcHHHHH--hhCCHHHHHHcCCCCHHHHHHH
Confidence 68999999999988887777543221 222 7788888877775544444443
No 40
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=41.98 E-value=43 Score=35.36 Aligned_cols=104 Identities=17% Similarity=0.295 Sum_probs=64.7
Q ss_pred cceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCc
Q 022739 40 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 119 (293)
Q Consensus 40 kM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRM 119 (293)
+..+|+|.||+.-.|.= .||- .+. .|+|-.-+ ...+||+|+|-...-.. .+-+-=-
T Consensus 377 ~~DLLlIDDIq~l~gke--~tqe----eLF--~l~N~l~e---------------~gk~IIITSd~~P~eL~-~l~~rL~ 432 (617)
T PRK14086 377 EMDILLVDDIQFLEDKE--STQE----EFF--HTFNTLHN---------------ANKQIVLSSDRPPKQLV-TLEDRLR 432 (617)
T ss_pred cCCEEEEehhccccCCH--HHHH----HHH--HHHHHHHh---------------cCCCEEEecCCChHhhh-hccHHHH
Confidence 36799999999877643 2331 122 34454431 23589999986532221 1111111
Q ss_pred cccccC-------cCCccchhhhhcccccCCCC--hHHHHHHhhhCCCCcchhHhhh
Q 022739 120 EKFYWA-------PTREDRIGVCKGIFRNDNVA--DDDIVKLVDTFPGQSIDFFGAL 167 (293)
Q Consensus 120 eKFYW~-------Ptred~i~iv~~if~~Dg~~--~~dv~~LVd~Fp~Q~iDFFGAL 167 (293)
..|-|- |..|.|+.|++..++..++. ++-++-|+..|+..-=...|||
T Consensus 433 SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL 489 (617)
T PRK14086 433 NRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGAL 489 (617)
T ss_pred hhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 246664 89999999999999888655 7777888888887633334443
No 41
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=39.42 E-value=11 Score=25.60 Aligned_cols=50 Identities=18% Similarity=0.394 Sum_probs=27.7
Q ss_pred HHHHHHHhhhcccccccccccCCCCCCcccCCcCCHHHHHHHHHHHHHHHHH
Q 022739 174 DEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQEN 225 (293)
Q Consensus 174 d~Vr~wi~~vG~e~ig~~lvns~~~~p~f~~p~~tl~~Lle~G~~lv~EQe~ 225 (293)
++|.+|+.++|.+.....+....=.-..+ +.+|-+.|.+.|-.....+..
T Consensus 5 ~~V~~wL~~~~~~~y~~~f~~~~i~g~~L--~~l~~~dL~~lgi~~~g~r~~ 54 (63)
T cd00166 5 EDVAEWLESLGLGQYADNFRENGIDGDLL--LLLTEEDLKELGITLPGHRKK 54 (63)
T ss_pred HHHHHHHHHcChHHHHHHHHHcCCCHHHH--hHCCHHHHHHcCCCCHHHHHH
Confidence 57899999999887777665432111111 144555555555444333333
No 42
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=38.93 E-value=20 Score=34.76 Aligned_cols=102 Identities=22% Similarity=0.306 Sum_probs=66.0
Q ss_pred cceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCcccccc---ccccC
Q 022739 40 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA---PLIRD 116 (293)
Q Consensus 40 kM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYA---PLiRD 116 (293)
++.+|+|-|||.-.|.= .|| -.--.++|-.-. ...+||+|+|..+.... |=++
T Consensus 211 ~~dlLiiDDi~~l~~~~--~~~------~~l~~~~n~l~~---------------~~~~iiits~~~p~~l~~l~~~l~- 266 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKE--RTQ------EEFFHTFNALHE---------------AGKQIVLTSDRPPKELPGLEERLR- 266 (450)
T ss_pred cCCEEEEehhhhhcCCH--HHH------HHHHHHHHHHHH---------------CCCcEEEECCCCHHHHHHHHHHHH-
Confidence 57899999999866542 122 111222332211 12369999987654432 3222
Q ss_pred CCcccccc-------CcCCccchhhhhcccccCC--CChHHHHHHhhhCCCCcchhHhhhh
Q 022739 117 GRMEKFYW-------APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSIDFFGALR 168 (293)
Q Consensus 117 GRMeKFYW-------~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp~Q~iDFFGALR 168 (293)
.|+ -| .|+.++|..|++...+..+ ++++-++-|++.+.+-.=..-|||.
T Consensus 267 SRl---~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~ 324 (450)
T PRK00149 267 SRF---EWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALN 324 (450)
T ss_pred hHh---cCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHH
Confidence 243 34 5999999999999988655 6788999999999987655566654
No 43
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=36.65 E-value=1.4e+02 Score=33.25 Aligned_cols=132 Identities=25% Similarity=0.442 Sum_probs=80.3
Q ss_pred cccceEEEeecccccCCcCC-CCcce--eecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCccccccc-c
Q 022739 38 KGKMCCLMINDLDAGAGRMG-GTTQY--TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP-L 113 (293)
Q Consensus 38 ~GkM~~L~INDLDAG~Grf~-~~TQ~--TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAP-L 113 (293)
.-|.|+||...+|.=|-+-| +.|-. .|=||+. | |+-| .+-..-|=|+ ..----.|--| |
T Consensus 758 ~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlL--T-----------elDG---~Egl~GV~i~-aaTsRpdliDpAL 820 (952)
T KOG0735|consen 758 SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLL--T-----------ELDG---AEGLDGVYIL-AATSRPDLIDPAL 820 (952)
T ss_pred ccCCeEEEeccccccCcccCCCCCCchHHHHHHHH--H-----------hhcc---ccccceEEEE-EecCCccccCHhh
Confidence 67999999999998877765 23333 3556665 1 2222 1112223222 22222234456 9
Q ss_pred ccCCCccccccC--cCCccchhhhhcccc----cCCCChHHHHHHhhhCCCCcchhHhhhhhhhhhH---HHHHHHhhhc
Q 022739 114 IRDGRMEKFYWA--PTREDRIGVCKGIFR----NDNVADDDIVKLVDTFPGQSIDFFGALRARVYDD---EVRKWISGVG 184 (293)
Q Consensus 114 iRDGRMeKFYW~--Ptred~i~iv~~if~----~Dg~~~~dv~~LVd~Fp~Q~iDFFGALRaR~YDd---~Vr~wi~~vG 184 (293)
.|-||.||-..- |+..+|+.|.+.+=. ++.+.-+-+...-|-|.|- -|.+-+||- +|++|+.+.|
T Consensus 821 LRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgA------Dlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 821 LRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGA------DLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred cCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchh------hHHHHHHHHHHHHHHHHHHhcC
Confidence 999999998775 777888888766533 3344444444445555442 256677775 5789999998
Q ss_pred cccccccc
Q 022739 185 VGSIGKSL 192 (293)
Q Consensus 185 ~e~ig~~l 192 (293)
.+.+....
T Consensus 895 ~~~~~p~~ 902 (952)
T KOG0735|consen 895 EEGVVPSI 902 (952)
T ss_pred ccccCCcc
Confidence 77766533
No 44
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=34.66 E-value=1e+02 Score=30.93 Aligned_cols=132 Identities=26% Similarity=0.371 Sum_probs=85.2
Q ss_pred ecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccC-CcCCCCcceeecchhhhhhhhhhccCCCccCCC
Q 022739 8 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 86 (293)
Q Consensus 8 mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~-Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlp 86 (293)
+-+.|.-...-||--|+.|.=+|-| |..-.+.+||..+||=+ -||+..|-.--.-|-+--.|.|.-|-
T Consensus 220 vvgsefvqkylgegprmvrdvfrla----kenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdg------- 288 (408)
T KOG0727|consen 220 VVGSEFVQKYLGEGPRMVRDVFRLA----KENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDG------- 288 (408)
T ss_pred eccHHHHHHHhccCcHHHHHHHHHH----hccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccC-------
Confidence 3344444555688889999888865 55778999999999965 58875554444445555556664431
Q ss_pred CcCCCCCCCCCCEEEecCCccccccccccCCCccccccC--cCCccchhhhhcccccCCCC-hHHHHHHhh
Q 022739 87 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIVKLVD 154 (293)
Q Consensus 87 g~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~--Ptred~i~iv~~if~~Dg~~-~~dv~~LVd 154 (293)
|+ ....|-+|..-|---||=--|+|-||.|.=.== |.|-.+.=+...|-.+=.+| +-|++.+|.
T Consensus 289 --fd--q~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~ 355 (408)
T KOG0727|consen 289 --FD--QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVA 355 (408)
T ss_pred --cC--cccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhc
Confidence 22 234567888889999998889999999964333 44444444444454444555 335555554
No 45
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.43 E-value=1.1e+02 Score=33.12 Aligned_cols=134 Identities=25% Similarity=0.427 Sum_probs=85.7
Q ss_pred CcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCc
Q 022739 3 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 82 (293)
Q Consensus 3 i~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~ 82 (293)
+---.||+.|.+----|-=||.||.=+++| |+--.|++||..|||==|.=....|. .-+|..|--|
T Consensus 363 VPFF~~sGSEFdEm~VGvGArRVRdLF~aA----k~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLL--------- 428 (752)
T KOG0734|consen 363 VPFFYASGSEFDEMFVGVGARRVRDLFAAA----KARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLL--------- 428 (752)
T ss_pred CCeEeccccchhhhhhcccHHHHHHHHHHH----HhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHH---------
Confidence 344568888888888889999999888776 67789999999999943332223442 3344444333
Q ss_pred cCCCCcCCCCCCCCCCEEEec-CCccccccc-cccCCCccccccCc--CCccchhhhhcccc----------------cC
Q 022739 83 VQLPGMYNKEENPRVPIIVTG-NDFSTLYAP-LIRDGRMEKFYWAP--TREDRIGVCKGIFR----------------ND 142 (293)
Q Consensus 83 Vqlpg~y~~~~~~RVPIIVTG-NDfStLYAP-LiRDGRMeKFYW~P--tred~i~iv~~if~----------------~D 142 (293)
|.+-| |..++ +|||-| -.|-.-.-| |+|-||.|+-.--| .-..|..|+..... +-
T Consensus 429 vEmDG-F~qNe----GiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~ 503 (752)
T KOG0734|consen 429 VEMDG-FKQNE----GIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTP 503 (752)
T ss_pred HHhcC-cCcCC----ceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCC
Confidence 23333 22222 777766 345555555 99999999876654 44566666643322 23
Q ss_pred CCChHHHHHHhhh
Q 022739 143 NVADDDIVKLVDT 155 (293)
Q Consensus 143 g~~~~dv~~LVd~ 155 (293)
|.+-.|++.||+.
T Consensus 504 GFsGAdLaNlVNq 516 (752)
T KOG0734|consen 504 GFSGADLANLVNQ 516 (752)
T ss_pred CCchHHHHHHHHH
Confidence 5567788888864
No 46
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=33.40 E-value=35 Score=30.94 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=44.2
Q ss_pred CCCEEEecCCccccccccccCCCccccccC-cCCccchhhhhcccccCC--CChHHHHHHhhhCCCCc
Q 022739 96 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQS 160 (293)
Q Consensus 96 RVPIIVTGNDfStLYAPLiRDGRMeKFYW~-Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp~Q~ 160 (293)
.+-+|++.|+.+.|...|... ...|... |+.++...++..+++..| ++++.+..|++...+-+
T Consensus 147 ~~~lIl~~~~~~~l~~~l~sr--~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~ 212 (355)
T TIGR02397 147 HVVFILATTEPHKIPATILSR--CQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSL 212 (355)
T ss_pred ceeEEEEeCCHHHHHHHHHhh--eeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCh
Confidence 355667778888777666554 4455444 567888889999998887 56777777887776643
No 47
>PRK09087 hypothetical protein; Validated
Probab=33.02 E-value=45 Score=29.79 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=45.5
Q ss_pred CCCEEEecCCccccccccccCCCcccccc-------CcCCccchhhhhcccccCC--CChHHHHHHhhhCCCCcchhHh
Q 022739 96 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW-------APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSIDFFG 165 (293)
Q Consensus 96 RVPIIVTGNDfStLYAPLiRDGRMeKFYW-------~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp~Q~iDFFG 165 (293)
+.+||+|++-...-+.....|-| ..|-| .|+.+++..+++..|+..+ ++++-++-|+..+++.--.-.+
T Consensus 117 g~~ilits~~~p~~~~~~~~dL~-SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 117 GTSLLMTSRLWPSSWNVKLPDLK-SRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred CCeEEEECCCChHHhccccccHH-HHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHH
Confidence 45899999854444433333322 11222 3999999999999998875 4588888888888875433333
No 48
>COG4387 Mu-like prophage protein gp36 [Function unknown]
Probab=32.81 E-value=35 Score=30.17 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHh---cccceE
Q 022739 23 KLIRQRYREAADIIK---KGKMCC 43 (293)
Q Consensus 23 rLIR~RYReAae~ik---~GkM~~ 43 (293)
--||+||++|...++ +|+.++
T Consensus 84 dq~r~rYe~av~~L~~va~G~V~l 107 (139)
T COG4387 84 DQARQRYEDAVRFLEKVASGAVSL 107 (139)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcc
Confidence 358999999999887 899864
No 49
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=32.74 E-value=97 Score=33.46 Aligned_cols=118 Identities=19% Similarity=0.286 Sum_probs=78.9
Q ss_pred cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCC
Q 022739 38 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 117 (293)
Q Consensus 38 ~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDG 117 (293)
.|+-.++||.+.| ++. ....|+-|-.|-+ +...+.+|.+.||...+-.+++ +
T Consensus 117 ~gk~KVIIIDEad----~Ls--------~~A~NALLKtLEE--------------Pp~~v~fILaTtd~~kL~~TIr--S 168 (709)
T PRK08691 117 AGKYKVYIIDEVH----MLS--------KSAFNAMLKTLEE--------------PPEHVKFILATTDPHKVPVTVL--S 168 (709)
T ss_pred hCCcEEEEEECcc----ccC--------HHHHHHHHHHHHh--------------CCCCcEEEEEeCCccccchHHH--H
Confidence 6888899999974 342 2334554444433 2245788888899998887765 8
Q ss_pred CccccccC-cCCccchhhhhcccccCCCC--hHHHHHHhhhCCCCcchhHhhh-------hhhhhhHHHHHHHhhh
Q 022739 118 RMEKFYWA-PTREDRIGVCKGIFRNDNVA--DDDIVKLVDTFPGQSIDFFGAL-------RARVYDDEVRKWISGV 183 (293)
Q Consensus 118 RMeKFYW~-Ptred~i~iv~~if~~Dg~~--~~dv~~LVd~Fp~Q~iDFFGAL-------RaR~YDd~Vr~wi~~v 183 (293)
|.-.|... ++.++....+..|++..|++ .+.+..|++..-|-.-|...-| ..++-.+.|++++..+
T Consensus 169 RC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAV 244 (709)
T ss_pred HHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHccc
Confidence 88888765 67788899999999988865 5667777777665544444433 2245555566655443
No 50
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]
Probab=31.57 E-value=51 Score=33.49 Aligned_cols=74 Identities=27% Similarity=0.353 Sum_probs=47.9
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHh--cccceEEEeeccccc-----------CCcCCCCcceeecchhhhhhhhhhccCC
Q 022739 14 ESGNAGEPAKLIRQRYREAADIIK--KGKMCCLMINDLDAG-----------AGRMGGTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 14 Es~~AGeParLIR~RYReAae~ik--~GkM~~L~INDLDAG-----------~Grf~~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
.|+++-+=.|-+|.-|-.-....| +|||..--.||+-+= .--||=+|-.|-.-|-++-- |-|..+|
T Consensus 273 DSGdl~~~skkvr~~y~~v~~~~K~~~~~m~~~a~N~~ne~ti~~lnkq~~e~~aFGIGTnl~t~~q~~sqP-iKLseDv 351 (420)
T KOG2511|consen 273 DSGDLAEYSKKVRKHYCDVERDPKPSKGIMYSDALNVLNEITIDALNKQGGEVDAFGIGTNLTTDFQKNSQP-IKLSEDV 351 (420)
T ss_pred cCCCHHHHHHHHHHHHHHhhccCCCcceEEEEecccchhHHHHHHHHhcCCceeeeccccccccccccccCC-ccccccc
Confidence 344444445567788888887776 999999999997530 11233233333333443333 7899999
Q ss_pred CccCCCCc
Q 022739 81 TCVQLPGM 88 (293)
Q Consensus 81 t~Vqlpg~ 88 (293)
|-|++|+.
T Consensus 352 tkvSiP~~ 359 (420)
T KOG2511|consen 352 TKVSIPGN 359 (420)
T ss_pred ceeccccc
Confidence 99999985
No 51
>PRK08727 hypothetical protein; Validated
Probab=31.30 E-value=28 Score=30.85 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=60.3
Q ss_pred cceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCcccccc----cccc
Q 022739 40 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA----PLIR 115 (293)
Q Consensus 40 kM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYA----PLiR 115 (293)
+.-+|+|.|++.-.|.-. + |...-.|+|-.-. ++.++|+|+|....-+. .|..
T Consensus 93 ~~dlLiIDDi~~l~~~~~--~------~~~lf~l~n~~~~---------------~~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 93 GRSLVALDGLESIAGQRE--D------EVALFDFHNRARA---------------AGITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred cCCEEEEeCcccccCChH--H------HHHHHHHHHHHHH---------------cCCeEEEECCCChhhhhhhhHHHHH
Confidence 446899999975544221 2 2222235554322 24579999997655443 3443
Q ss_pred C---CCccccccCcCCccchhhhhcccccC--CCChHHHHHHhhhCCCCcchhHhhh
Q 022739 116 D---GRMEKFYWAPTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIDFFGAL 167 (293)
Q Consensus 116 D---GRMeKFYW~Ptred~i~iv~~if~~D--g~~~~dv~~LVd~Fp~Q~iDFFGAL 167 (293)
. |..-+| =.|+.+++..|++.+.+.. .++++.+.-|+..++++.=...++|
T Consensus 150 Rl~~~~~~~l-~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L 205 (233)
T PRK08727 150 RLAQCIRIGL-PVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALL 205 (233)
T ss_pred HHhcCceEEe-cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 2 221121 1378899999998766544 4568888888888886433333334
No 52
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=30.91 E-value=1.4e+02 Score=25.46 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=33.4
Q ss_pred CchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCC
Q 022739 20 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 57 (293)
Q Consensus 20 eParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~ 57 (293)
+.-.+|++.||.+.+...+-++..+-|=-|=+|.+.|.
T Consensus 92 ~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p 129 (175)
T cd02907 92 ECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFP 129 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCC
Confidence 34679999999999999977899999999988888885
No 53
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.63 E-value=95 Score=28.94 Aligned_cols=95 Identities=13% Similarity=0.238 Sum_probs=64.6
Q ss_pred cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCC
Q 022739 38 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 117 (293)
Q Consensus 38 ~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDG 117 (293)
.|+..+++|.+.| .+.. +.. ..|.+.-++|. ...-+|++.|.-+.++.+|...+
T Consensus 106 ~~~~kiviIDE~~----~l~~--------~~~-~~ll~~le~~~-------------~~~~~Il~~~~~~kl~~~l~sr~ 159 (367)
T PRK14970 106 TGKYKIYIIDEVH----MLSS--------AAF-NAFLKTLEEPP-------------AHAIFILATTEKHKIIPTILSRC 159 (367)
T ss_pred cCCcEEEEEeChh----hcCH--------HHH-HHHHHHHhCCC-------------CceEEEEEeCCcccCCHHHHhcc
Confidence 5777899999976 3321 122 23444445541 12347778888889988877666
Q ss_pred CccccccCcCCccchhhhhcccccCC--CChHHHHHHhhhCCCC
Q 022739 118 RMEKFYWAPTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQ 159 (293)
Q Consensus 118 RMeKFYW~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp~Q 159 (293)
+.=. +..|+.++...++..+.+..| ++++.+..|+....+.
T Consensus 160 ~~v~-~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gd 202 (367)
T PRK14970 160 QIFD-FKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGA 202 (367)
T ss_pred eeEe-cCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCC
Confidence 5422 456788999999999988888 5688888888877653
No 54
>KOG4330 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.60 E-value=77 Score=29.60 Aligned_cols=36 Identities=36% Similarity=0.450 Sum_probs=26.2
Q ss_pred cCCcCCH-------HHHH-HHHHHHHHHHHHHhhhhhHHHHhcc
Q 022739 203 EQPRMTM-------EKLL-EYGNMIVQEQENVKRVQLADKYLSE 238 (293)
Q Consensus 203 ~~p~~tl-------~~Ll-e~G~~lv~EQe~V~~~~Ls~eYl~~ 238 (293)
++|.||| |.|| +.-..|-+|=|.|.+.+|+++|=.-
T Consensus 142 ek~~FTlrqVqmICErllKerE~klReeyE~vLttKLaEQydaf 185 (206)
T KOG4330|consen 142 EKPLFTLRQVQMICERLLKEREIKLREEYEMVLTTKLAEQYDAF 185 (206)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777 4454 4455677778899999999999543
No 55
>PF01524 Gemini_V1: Geminivirus V1 protein; InterPro: IPR002511 Disruption of the V1 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect Solanum lycopersicum (Tomato) (Lycopersicon esculentum) plants, suggesting that the V1 gene product is required for successful infection of the host [].; GO: 0019048 virus-host interaction, 0060967 negative regulation of gene silencing by RNA, 0030430 host cell cytoplasm
Probab=29.99 E-value=36 Score=27.59 Aligned_cols=57 Identities=25% Similarity=0.451 Sum_probs=35.9
Q ss_pred ccCcCCccchhhhhcccccCCCChHHHHHHhhhCCCCcc------hhHhhhhhhhhhHHHHHHHh
Q 022739 123 YWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI------DFFGALRARVYDDEVRKWIS 181 (293)
Q Consensus 123 YW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q~i------DFFGALRaR~YDd~Vr~wi~ 181 (293)
+|.|--.|-=.-||| |+- =+.-+.+..+-++++--++ |....||+|-|+++-+++-+
T Consensus 1 MWDPLlnefP~tvHG-fRC-MLAiKYlq~~~~~Y~p~tlG~dlirdLI~vlR~rnY~eA~~RY~~ 63 (78)
T PF01524_consen 1 MWDPLLNEFPETVHG-FRC-MLAIKYLQLVEKTYSPDTLGYDLIRDLISVLRARNYVEASRRYSH 63 (78)
T ss_pred CCccccccCCccccc-hhH-HHHHHHHHHcccccCCCCccHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 466655555555555 221 1233444445556666665 78899999999999888743
No 56
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=29.92 E-value=1.2e+02 Score=22.04 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=13.2
Q ss_pred CCCCCCEEEecCCccc
Q 022739 93 ENPRVPIIVTGNDFST 108 (293)
Q Consensus 93 ~~~RVPIIVTGNDfSt 108 (293)
..++++||+|+|+...
T Consensus 117 ~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 117 DRENVRVIGATNRPLL 132 (151)
T ss_pred cCCCeEEEEecCcccc
Confidence 3578999999998874
No 57
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=29.61 E-value=33 Score=34.70 Aligned_cols=47 Identities=23% Similarity=0.457 Sum_probs=39.7
Q ss_pred eecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCC
Q 022739 7 MMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 57 (293)
Q Consensus 7 ~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~ 57 (293)
-+|+..|-|-|-||--||.++=+ +|-+.-|.+.+||..||.=-|+-.
T Consensus 196 SvSSSDLvSKWmGESEkLVknLF----emARe~kPSIIFiDEiDslcg~r~ 242 (439)
T KOG0739|consen 196 SVSSSDLVSKWMGESEKLVKNLF----EMARENKPSIIFIDEIDSLCGSRS 242 (439)
T ss_pred EeehHHHHHHHhccHHHHHHHHH----HHHHhcCCcEEEeehhhhhccCCC
Confidence 46888999999999999999876 456778999999999997666554
No 58
>PF15167 DUF4581: Domain of unknown function (DUF4581)
Probab=29.55 E-value=20 Score=31.16 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=16.9
Q ss_pred ecCCccccccccccCCCccccccCcCCc
Q 022739 102 TGNDFSTLYAPLIRDGRMEKFYWAPTRE 129 (293)
Q Consensus 102 TGNDfStLYAPLiRDGRMeKFYW~Ptre 129 (293)
+||=|--|+|--. .-||| |||+|--.
T Consensus 12 s~~pf~lIaaee~-erRmD-FyadPgvS 37 (128)
T PF15167_consen 12 SGNPFDLIAAEEK-ERRMD-FYADPGVS 37 (128)
T ss_pred cCCChhhhhhhhh-hhccC-cccCCCCc
Confidence 4555555555544 56887 89999643
No 59
>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=28.50 E-value=48 Score=32.43 Aligned_cols=31 Identities=42% Similarity=0.734 Sum_probs=22.0
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHh-----cccceE
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-----KGKMCC 43 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik-----~GkM~~ 43 (293)
|+|||++|+||-..- -| ||||++++ +||+.|
T Consensus 230 ~vEpiils~ge~~EV-------tI----~e~aeaV~ea~~F~G~l~~ 265 (315)
T KOG1431|consen 230 GVEPIILSVGESDEV-------TI----REAAEAVVEAVDFTGKLVW 265 (315)
T ss_pred CccceEeccCcccee-------EH----HHHHHHHHHHhCCCceEEe
Confidence 789999999974321 23 57777775 888754
No 60
>PF10722 YbjN: Putative bacterial sensory transduction regulator; InterPro: IPR019660 YbjN is a putative sensory transduction regulator protein found in Proteobacteria. As it is a multi-copy suppressor of the coenzyme A-associated temperature sensitivity in temperature-sensitive mutant strains of Escherichia coli the suggestion is that it both helps CoA-A1 and possibly works as a general stabiliser for some other unstable proteins []. ; PDB: 2PLG_B.
Probab=28.32 E-value=14 Score=27.42 Aligned_cols=52 Identities=25% Similarity=0.449 Sum_probs=34.9
Q ss_pred cCCCccccccCcCCccchhhhhcccccCCCChHHHHHHhhhCCCCcchhHhhhh
Q 022739 115 RDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR 168 (293)
Q Consensus 115 RDGRMeKFYW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q~iDFFGALR 168 (293)
+.=++=|||. ..++.+-+-+.+.-..|++.+.+..++..|-...-+|+-+|+
T Consensus 75 ~~~~~~k~~~--~~d~~~~~~~~~~~~~g~s~~ql~~~l~~~~~~~~~~~~~l~ 126 (127)
T PF10722_consen 75 REYRFPKFYL--DEDGDVVLEYDLPLDAGLSDEQLDSALDRFLSTADQFFDALR 126 (127)
T ss_dssp TTTTTT-EEE--EETTEEEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeEEEE--EeCCeEEEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667777 334444466667778899999999999999888888888775
No 61
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=28.03 E-value=1.4e+02 Score=31.40 Aligned_cols=71 Identities=21% Similarity=0.372 Sum_probs=47.7
Q ss_pred cccccCCCcccccc-CcCCccchhhhhccccc------CCCChHHHHHHhh---------hCCCCcchhHhhhhhh----
Q 022739 111 APLIRDGRMEKFYW-APTREDRIGVCKGIFRN------DNVADDDIVKLVD---------TFPGQSIDFFGALRAR---- 170 (293)
Q Consensus 111 APLiRDGRMeKFYW-~Ptred~i~iv~~if~~------Dg~~~~dv~~LVd---------~Fp~Q~iDFFGALRaR---- 170 (293)
..|.| |..+++- +|+.++++.|++++-.. =.++.+.++.+|+ .||+-+||+....-|+
T Consensus 331 ~al~r--Rf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~ 408 (731)
T TIGR02639 331 RALSR--RFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLR 408 (731)
T ss_pred HHHHH--hCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcC
Confidence 34666 7777755 48999999999865432 2478888888774 4699999998544332
Q ss_pred --------hhhHHHHHHHhhh
Q 022739 171 --------VYDDEVRKWISGV 183 (293)
Q Consensus 171 --------~YDd~Vr~wi~~v 183 (293)
+.-+.|.+.|..+
T Consensus 409 ~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 409 PKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred cccccccccCHHHHHHHHHHH
Confidence 4445556655554
No 62
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=26.79 E-value=3.9e+02 Score=28.91 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=92.6
Q ss_pred HHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCccccccc-c
Q 022739 35 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP-L 113 (293)
Q Consensus 35 ~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAP-L 113 (293)
.+++-.-|+|++.++|.-- .-|...|..+-|+-+-..-. -+..+.+.+=||.|.|.-+....- -
T Consensus 552 ~v~~~p~sVlllDEieka~-------------~~v~~~LLq~ld~G~ltd~~--g~~vd~rn~iiI~TsN~g~~~~~~~~ 616 (758)
T PRK11034 552 AVIKHPHAVLLLDEIEKAH-------------PDVFNLLLQVMDNGTLTDNN--GRKADFRNVVLVMTTNAGVRETERKS 616 (758)
T ss_pred HHHhCCCcEEEeccHhhhh-------------HHHHHHHHHHHhcCeeecCC--CceecCCCcEEEEeCCcCHHHHhhcc
Confidence 3454456999999998642 12566677777765443211 233455677899999955432111 0
Q ss_pred ccCCC-c--------cccccCcCCccchh-hhhcccccCCCChHHHHHHhhhCCCCcchhHhhh-hhhhhhHHHHHHHhh
Q 022739 114 IRDGR-M--------EKFYWAPTREDRIG-VCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGAL-RARVYDDEVRKWISG 182 (293)
Q Consensus 114 iRDGR-M--------eKFYW~Ptred~i~-iv~~if~~Dg~~~~dv~~LVd~Fp~Q~iDFFGAL-RaR~YDd~Vr~wi~~ 182 (293)
+-.+. . =|.++.|..-.|+. || .| ..++.+++.++++.+=.+--.-+..- -.-.+++++.+||.+
T Consensus 617 ~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii--~f--~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~ 692 (758)
T PRK11034 617 IGLIHQDNSTDAMEEIKKIFTPEFRNRLDNII--WF--DHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAE 692 (758)
T ss_pred cCcccchhhHHHHHHHHHhcCHHHHccCCEEE--Ec--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHH
Confidence 00000 0 03467776666664 33 34 34889999999986533211111000 122489999999998
Q ss_pred hcccc-cccccccCCCCCCcccCCcCCHHHHHHHHHHHHHHHHHHhhhhhHHHHhccc
Q 022739 183 VGVGS-IGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 239 (293)
Q Consensus 183 vG~e~-ig~~lvns~~~~p~f~~p~~tl~~Lle~G~~lv~EQe~V~~~~Ls~eYl~~a 239 (293)
.|.+. .|.| .|.+.=++...-.||+++|++.
T Consensus 693 ~~~~~~~GAR--------------------------~l~r~i~~~l~~~la~~il~~~ 724 (758)
T PRK11034 693 KGYDRAMGAR--------------------------PMARVIQDNLKKPLANELLFGS 724 (758)
T ss_pred hCCCCCCCCc--------------------------hHHHHHHHHHHHHHHHHHHhCc
Confidence 88653 4443 2444556667778999999753
No 63
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=26.67 E-value=43 Score=29.58 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=47.8
Q ss_pred CCCCEEEecCCccccccccccCCCccccccC-cCCccchhhhhcccccCC--CChHHHHHHhhhCCCC
Q 022739 95 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQ 159 (293)
Q Consensus 95 ~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~-Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp~Q 159 (293)
+.+.+|+++|..+.++.+|...+.+ +.-. |+.++...++..+++..| ++++.+..|+....+.
T Consensus 131 ~~~~lIl~~~~~~~l~~~l~sr~~~--~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd 196 (319)
T PRK00440 131 QNTRFILSCNYSSKIIDPIQSRCAV--FRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGD 196 (319)
T ss_pred CCCeEEEEeCCccccchhHHHHhhe--eeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 3567999999999999888765544 3333 667888889988888776 4688888888877653
No 64
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=26.42 E-value=62 Score=31.88 Aligned_cols=100 Identities=17% Similarity=0.351 Sum_probs=61.0
Q ss_pred cceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecC-C---cccccccccc
Q 022739 40 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-D---FSTLYAPLIR 115 (293)
Q Consensus 40 kM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGN-D---fStLYAPLiR 115 (293)
+..+|+|.|++...|.-+ +|- .+. .++|-.-. ...+||+|+| + +..+..+|+.
T Consensus 194 ~~dvLlIDDi~~l~~~~~--~q~----elf--~~~n~l~~---------------~~k~iIitsd~~p~~l~~l~~rL~S 250 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTG--VQT----ELF--HTFNELHD---------------SGKQIVICSDREPQKLSEFQDRLVS 250 (440)
T ss_pred cCCEEEEechhhhcCcHH--HHH----HHH--HHHHHHHH---------------cCCeEEEECCCCHHHHHHHHHHHhh
Confidence 567999999999887643 331 111 12332111 1236888886 2 2223333331
Q ss_pred CCCcccccc-------CcCCccchhhhhcccccCC--CChHHHHHHhhhCCCCcchhHhhh
Q 022739 116 DGRMEKFYW-------APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSIDFFGAL 167 (293)
Q Consensus 116 DGRMeKFYW-------~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp~Q~iDFFGAL 167 (293)
.|-| .|+.|.|..|+..+.+..+ ++++-++-|.+.+++.-=...|||
T Consensus 251 -----R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 251 -----RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_pred -----HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHH
Confidence 1222 3889999999998887654 568888899999998644444444
No 65
>PF15097 Ig_J_chain: Immunoglobulin J chain
Probab=26.28 E-value=26 Score=30.73 Aligned_cols=44 Identities=30% Similarity=0.428 Sum_probs=32.1
Q ss_pred CCcceeecchhhhhhhhhhccCCCccCCCCcCCCC--CCCCCCEEEec
Q 022739 58 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE--ENPRVPIIVTG 103 (293)
Q Consensus 58 ~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~--~~~RVPIIVTG 103 (293)
+.|....+||+|.||--||||.|. ..=-.|+.. -+..||++--|
T Consensus 72 dp~evel~~qvvtAtqsn~cde~~--etCyTydRNKCYt~~vpl~y~G 117 (134)
T PF15097_consen 72 DPTEVELDNQVVTATQSNICDEDS--ETCYTYDRNKCYTNTVPLTYGG 117 (134)
T ss_pred CccccccCCEEEEeecCcccCCCC--CceeeeccCceeeeeeeeecCC
Confidence 468899999999999999999996 222235443 35777876544
No 66
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=26.13 E-value=1.1e+02 Score=28.64 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=27.2
Q ss_pred CCchHHHHHHHHHHHHHHhcccceEEEee
Q 022739 19 GEPAKLIRQRYREAADIIKKGKMCCLMIN 47 (293)
Q Consensus 19 GeParLIR~RYReAae~ik~GkM~~L~IN 47 (293)
|.|...++.|-.+|+++-++||.+.|++.
T Consensus 60 g~ps~~l~~Rl~~A~~LYk~gk~~~ilvS 88 (239)
T PRK10834 60 GVINQYYRYRIQGAINAYNSGKVNYLLLS 88 (239)
T ss_pred CCcCHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 89999999999999999999999988776
No 67
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=25.80 E-value=24 Score=36.08 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=27.6
Q ss_pred cccCCCccccc--cCcCCccchhhhhcccccCCCC
Q 022739 113 LIRDGRMEKFY--WAPTREDRIGVCKGIFRNDNVA 145 (293)
Q Consensus 113 LiRDGRMeKFY--W~Ptred~i~iv~~if~~Dg~~ 145 (293)
||||.||.+.. |.-.-.=-+..|..+|++-|+|
T Consensus 356 miRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvS 390 (448)
T PF09818_consen 356 MIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVS 390 (448)
T ss_pred eehhHHHHHhhccCCCCcchHHHHHHHHHHHcCce
Confidence 89999999988 7766666777888888888887
No 68
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=25.70 E-value=74 Score=31.68 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=57.1
Q ss_pred CCC-CCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcce------eecchhh---------hhhhhhhccC
Q 022739 16 GNA-GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQY------TVNNQMV---------NATLMNIADN 79 (293)
Q Consensus 16 ~~A-GeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~------TVNnQ~V---------~aTLMNiaDn 79 (293)
+.| |+...-.+.+-..|.+.+++.-..++-+-..|. +|+-++ -+- .+..++. ..+|+=.|||
T Consensus 270 pg~tg~~~t~~~~k~~~~~~~l~~~Dfv~vh~~~~D~-~GH~gd-~~~k~~aiE~iD~~l~~il~~l~~~~~~liITaDH 347 (412)
T PRK04024 270 EGATGGKDTNYMAKAKAAVELLKEYDFVLLNIKGTDE-AGHDGD-FEGKVEVIEKIDKMLGYILDNLDLDEVYIAVTGDH 347 (412)
T ss_pred CCCcCCCCCCHHHHHHHHHHHhccCCEEEEeccCcch-hhcCCC-HHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEecCC
Confidence 444 777777888888999999988899999999998 777662 111 1122221 2356667899
Q ss_pred CCccCCCCcCCCCCCCCCCEEEecCCc
Q 022739 80 PTCVQLPGMYNKEENPRVPIIVTGNDF 106 (293)
Q Consensus 80 Pt~Vqlpg~y~~~~~~RVPIIVTGNDf 106 (293)
+|-+ ....-...-||+||.|...
T Consensus 348 gtp~----~~~~HT~~pVP~ii~g~~v 370 (412)
T PRK04024 348 STPV----EVKDHSGDPVPILIYGPGV 370 (412)
T ss_pred CCCc----ccccCCCCCEeEEEEcCCc
Confidence 9943 3333345569999998643
No 69
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=25.25 E-value=1.2e+02 Score=26.86 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=11.1
Q ss_pred CcchhHhhhhhhhhh
Q 022739 159 QSIDFFGALRARVYD 173 (293)
Q Consensus 159 Q~iDFFGALRaR~YD 173 (293)
+-+.|-|.||.++..
T Consensus 150 ~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 150 SYIDFLYECRQKIKE 164 (202)
T ss_pred HHHHHHHHHHHHHHH
Confidence 357788888887754
No 70
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=24.99 E-value=46 Score=25.77 Aligned_cols=50 Identities=12% Similarity=0.258 Sum_probs=41.6
Q ss_pred cCCccchhhhhcccccCC-CChHHHHHHhhhC--CCCcchhHhhhhhhhhhHH
Q 022739 126 PTREDRIGVCKGIFRNDN-VADDDIVKLVDTF--PGQSIDFFGALRARVYDDE 175 (293)
Q Consensus 126 Ptred~i~iv~~if~~Dg-~~~~dv~~LVd~F--p~Q~iDFFGALRaR~YDd~ 175 (293)
+--+|++.++..+.+... ++..+|.+|+..| .+--|-+--.|-.++||.+
T Consensus 21 ~fd~dkl~~l~~~~~~~~~~T~~Qv~~il~~f~fd~~kl~~lk~l~p~i~D~~ 73 (95)
T PF14771_consen 21 SFDSDKLKVLEAAAKTNNCFTCAQVKQILSLFSFDNDKLKALKLLYPYIVDPQ 73 (95)
T ss_pred CCcHHHHHHHHHHHhcCCceeHHHHHHHHHHcCCCHHHHHHHHHHhhhccCHH
Confidence 556899999999999988 9999999999955 4457777777788888876
No 71
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=24.64 E-value=61 Score=38.15 Aligned_cols=93 Identities=25% Similarity=0.422 Sum_probs=72.1
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccccCcCCccchhhh----------------h--cccccC
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC----------------K--GIFRND 142 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~Ptred~i~iv----------------~--~if~~D 142 (293)
---++|..|.-++-.-||.+ +||.|--|++.|+|-| .|++=|- | ..|.+=
T Consensus 1517 ~lWevP~~WTleeAstVP~V-----YsTaYYALVvRG~mkk-------GekiLIHaGsGGVGQAAIaiALa~G~~VFTTV 1584 (2376)
T KOG1202|consen 1517 FLWEVPSKWTLEEASTVPVV-----YSTAYYALVVRGQMKK-------GEKILIHAGSGGVGQAAIAIALAHGCTVFTTV 1584 (2376)
T ss_pred hhhhCCcccchhhcccCceE-----eeeehhhhhhhccccC-------CcEEEEecCCCchhHHHHHHHHHcCCEEEEec
Confidence 34589999999999999999 8999999999999987 4554221 1 246665
Q ss_pred CCChHHHHHHhhhCCCCcchhHhhhhhhhhhHHHHHHHhhhccc
Q 022739 143 NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVG 186 (293)
Q Consensus 143 g~~~~dv~~LVd~Fp~Q~iDFFGALRaR~YDd~Vr~wi~~vG~e 186 (293)
| |.|-=+-|..+||.--=--||-=|.--+..-|+.--+.-|++
T Consensus 1585 G-SaEKRefL~~rFPqLqe~~~~NSRdtsFEq~vl~~T~GrGVd 1627 (2376)
T KOG1202|consen 1585 G-SAEKREFLLKRFPQLQETNFANSRDTSFEQHVLWHTKGRGVD 1627 (2376)
T ss_pred C-cHHHHHHHHHhchhhhhhcccccccccHHHHHHHHhcCCCee
Confidence 5 567778899999986666778888888888888776666766
No 72
>KOG4565 consensus E93 protein involved in programmed cell death, putative transcription regulator [Transcription]
Probab=23.71 E-value=43 Score=31.12 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=17.3
Q ss_pred HHHHHHHH--------HHHHHHhcccceEE
Q 022739 23 KLIRQRYR--------EAADIIKKGKMCCL 44 (293)
Q Consensus 23 rLIR~RYR--------eAae~ik~GkM~~L 44 (293)
|--|-||| ||..++..|||++-
T Consensus 113 RkKRGrYRqYd~eileEAi~~VmsGkMsVs 142 (206)
T KOG4565|consen 113 RKKRGRYRQYDKEILEEAIRSVMSGKMSVS 142 (206)
T ss_pred cccccchhhhhHHHHHHHHHHHhcCceeee
Confidence 44577888 67888889999984
No 73
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.94 E-value=1e+02 Score=30.82 Aligned_cols=116 Identities=23% Similarity=0.427 Sum_probs=76.9
Q ss_pred ceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccc-cCCcCCCCcceeecchhhhhhhhhhccCCCcc
Q 022739 5 PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCV 83 (293)
Q Consensus 5 pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDA-G~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~V 83 (293)
-|-+|+.||-...-||-+|+.|+=|--|-|+ -.|.+|...||. |--|..+++--.-.-|-..-.|.|.
T Consensus 209 firvsgselvqk~igegsrmvrelfvmareh----apsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq------- 277 (404)
T KOG0728|consen 209 FIRVSGSELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ------- 277 (404)
T ss_pred EEEechHHHHHHHhhhhHHHHHHHHHHHHhc----CCceEeeecccccccccccCCCCccHHHHHHHHHHHHh-------
Confidence 4778999999999999999999888766554 578999999985 5556543221111123333456664
Q ss_pred CCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccc-c-CcCCccchhhh
Q 022739 84 QLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY-W-APTREDRIGVC 135 (293)
Q Consensus 84 qlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFY-W-~Ptred~i~iv 135 (293)
|-| | +.+..+-+|..-|-.--|=.-|+|-||.|.=. + .|+.+-|..|+
T Consensus 278 -ldg-f--eatknikvimatnridild~allrpgridrkiefp~p~e~ar~~il 327 (404)
T KOG0728|consen 278 -LDG-F--EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDIL 327 (404)
T ss_pred -ccc-c--ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHH
Confidence 333 1 23455677777777776666799999998532 2 35555555555
No 74
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=22.81 E-value=55 Score=23.04 Aligned_cols=51 Identities=16% Similarity=0.368 Sum_probs=29.5
Q ss_pred HHHHHHHhhhcccccccccccCCCCCCcccCCcCCHHHHHHHHHHHHHHHHHH
Q 022739 174 DEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENV 226 (293)
Q Consensus 174 d~Vr~wi~~vG~e~ig~~lvns~~~~p~f~~p~~tl~~Lle~G~~lv~EQe~V 226 (293)
++|.+|+..+|.+.....+.+..-....| ..+|-+.|.+-|=.....|..+
T Consensus 6 ~~V~~WL~~~~l~~y~~~F~~~~i~g~~L--~~lt~~dL~~lgi~~~ghr~ki 56 (64)
T PF00536_consen 6 EDVSEWLKSLGLEQYAENFEKNYIDGEDL--LSLTEEDLEELGITKLGHRKKI 56 (64)
T ss_dssp HHHHHHHHHTTGGGGHHHHHHTTSSHHHH--TTSCHHHHHHTT-SSHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCchHHHH--HhcCHHHHHHcCCCCHHHHHHH
Confidence 68999999999988777663332111111 2456666666554444444444
No 75
>COG2733 Predicted membrane protein [Function unknown]
Probab=21.48 E-value=75 Score=32.49 Aligned_cols=97 Identities=21% Similarity=0.360 Sum_probs=59.2
Q ss_pred CccccccCcCCccchhhhhcccccCCCChHHHHHHhhhCCCCcchhHhhhhhhhhhHHHHHHHhhhcccccccccccCCC
Q 022739 118 RMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKE 197 (293)
Q Consensus 118 RMeKFYW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q~iDFFGALRaR~YDd~Vr~wi~~vG~e~ig~~lvns~~ 197 (293)
+.+||||+|+-.+ +...+..+|+ .++|+| ++++-|-.-.-+++|+++|.++-.+-+ + +
T Consensus 158 ~i~e~~~~~~~~~---vL~~l~~d~r-----~q~l~D-------~~~~~L~r~~~~~~v~~~i~~~i~r~~-----~--e 215 (415)
T COG2733 158 AIAEVYLGPTAGR---VLESLTADDR-----HQALLD-------KLIDRLIRWLLNDKVREFIAAVIVRYL-----E--E 215 (415)
T ss_pred HHhcccccchHHH---HHHHHHhccc-----HHHHHH-------HHHHHHHHHhhhhhhHHHHHHHHHHHH-----H--h
Confidence 4579999999875 4455666666 466777 456667777778888888877633221 1 1
Q ss_pred CCCcccCCcCCHH----H-HHHHHHHHHHHHHHHhhhhhHHHHhc
Q 022739 198 AAPTFEQPRMTME----K-LLEYGNMIVQEQENVKRVQLADKYLS 237 (293)
Q Consensus 198 ~~p~f~~p~~tl~----~-Lle~G~~lv~EQe~V~~~~Ls~eYl~ 237 (293)
..|.| .|.++.+ + +-+++..+..|=-...++++-.+|=+
T Consensus 216 e~p~f-~~~~~~~~v~~~~I~~a~~~~~D~v~~~p~h~~rk~~~R 259 (415)
T COG2733 216 EHPLF-APIIIVSLVGKRDISDAVNSFLDEVRRDPDHKMRKDFDR 259 (415)
T ss_pred cCccc-hhhhhHHHHhhchHHHHHHHHHHHHHhCcCccchHHHHH
Confidence 22333 2333332 2 45556777777666666776666644
No 76
>KOG4245 consensus Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=21.30 E-value=27 Score=33.45 Aligned_cols=38 Identities=37% Similarity=0.800 Sum_probs=23.3
Q ss_pred cCCCccccccCcC-----CccchhhhhcccccCCCChHHHHHHhhhCCCCcchh
Q 022739 115 RDGRMEKFYWAPT-----REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDF 163 (293)
Q Consensus 115 RDGRMeKFYW~Pt-----red~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q~iDF 163 (293)
-||||+| ||-|- .|--+.||.-|.. .+...||.-.+=|
T Consensus 137 wdgrl~k-ywlpwlvgmpaeta~aics~img----------~i~~~fpklklcf 179 (297)
T KOG4245|consen 137 WDGRLAK-YWLPWLVGMPAETAIAICSMIMG----------GIFEKFPKLKLCF 179 (297)
T ss_pred cccchHh-hhhHHHhCCchHHHHHHHHHHHh----------hHHHhCchheeee
Confidence 3999999 89873 3445566654432 2445566655554
No 77
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=21.09 E-value=2.7e+02 Score=25.48 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=33.1
Q ss_pred HHHHHh-cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCcc
Q 022739 32 AADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 107 (293)
Q Consensus 32 Aae~ik-~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfS 107 (293)
..+.++ .++..+|+|-++|.=.+.- |-+--+|+.+.+++ ..+...|.+|+++|+.+
T Consensus 120 l~~~l~~~~~~~vlvIDE~d~L~~~~----------~~~L~~l~~~~~~~----------~~~~~~v~lI~i~n~~~ 176 (365)
T TIGR02928 120 LYKELNERGDSLIIVLDEIDYLVGDD----------DDLLYQLSRARSNG----------DLDNAKVGVIGISNDLK 176 (365)
T ss_pred HHHHHHhcCCeEEEEECchhhhccCC----------cHHHHhHhcccccc----------CCCCCeEEEEEEECCcc
Confidence 333444 7889999999999765321 11222344442221 12336788999999865
No 78
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=20.93 E-value=1.3e+02 Score=27.12 Aligned_cols=92 Identities=20% Similarity=0.354 Sum_probs=53.9
Q ss_pred CCChHHHHHHhhhCCCCc--c-hhHhhhhhhhhhHHHHHHHhhhcccccccccccCCCCC-------CcccCCcCCHHHH
Q 022739 143 NVADDDIVKLVDTFPGQS--I-DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAA-------PTFEQPRMTMEKL 212 (293)
Q Consensus 143 g~~~~dv~~LVd~Fp~Q~--i-DFFGALRaR~YDd~Vr~wi~~vG~e~ig~~lvns~~~~-------p~f~~p~~tl~~L 212 (293)
|+--.-|.++++.-|.+. . .| -|-.-..-..+|+|+.+.|.+=+...||...... +...+++..-+.-
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~l--ILqP~~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~~~~~~~~~~~ 151 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRL--ILQPNTHAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGEEKPESLSEAE 151 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EE--EEEESS-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESSS------HHH
T ss_pred cCCHHHHHHHHHhhHHHhccCCeE--EEeCCCChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCCCCCCCCChHH
Confidence 444556777777665431 0 11 1222334578999999999999999999776542 3334443334667
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHh
Q 022739 213 LEYGNMIVQEQENVKRVQLADKYL 236 (293)
Q Consensus 213 le~G~~lv~EQe~V~~~~Ls~eYl 236 (293)
++.|..|.+++.-+....|..+.-
T Consensus 152 ~~~G~~l~~~~~~~~~~~l~~~~~ 175 (205)
T PF04816_consen 152 LEFGPVLLEKKDPLLKEYLQRKLR 175 (205)
T ss_dssp HHH-HHHHHHT-HHHHHHHHHHHH
T ss_pred HHhCHHHHhccCHHHHHHHHHHHH
Confidence 899999998877666655555443
No 79
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.59 E-value=3e+02 Score=25.77 Aligned_cols=47 Identities=23% Similarity=0.356 Sum_probs=40.8
Q ss_pred CCCChHHHHHHh--hhCCCCcchhHhhhhhhhhhHHHHHHHhhhcccccccccc
Q 022739 142 DNVADDDIVKLV--DTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLV 193 (293)
Q Consensus 142 Dg~~~~dv~~LV--d~Fp~Q~iDFFGALRaR~YDd~Vr~wi~~vG~e~ig~~lv 193 (293)
+.++.+++..|- .-+|-.+|-+|.+||+| .++.+..+|+.-+|--+|
T Consensus 30 ~~lpp~~laslGsKri~dp~~L~~f~~lk~~-----A~r~~~~~G~rFlgG~aV 78 (257)
T PF11348_consen 30 DELPPEDLASLGSKRICDPDALKPFSKLKKR-----AERLCLKVGVRFLGGYAV 78 (257)
T ss_pred ccCCHHHHHhcCceeeeChHHcCHHHHHHHH-----HHHHHHHcCCcccceeEc
Confidence 789999999998 78999999999999987 467888899988887665
No 80
>PF05334 DUF719: Protein of unknown function (DUF719); InterPro: IPR007998 This family consists of several eukaryotic proteins of unknown function.
Probab=20.28 E-value=1.6e+02 Score=27.02 Aligned_cols=59 Identities=22% Similarity=0.413 Sum_probs=39.5
Q ss_pred HHHHHHHhhhc----------ccccccccccC-CCCCCcccC---------Cc-CCHHHHHHHHHHHHHH-HHHHhhhhh
Q 022739 174 DEVRKWISGVG----------VGSIGKSLVNS-KEAAPTFEQ---------PR-MTMEKLLEYGNMIVQE-QENVKRVQL 231 (293)
Q Consensus 174 d~Vr~wi~~vG----------~e~ig~~lvns-~~~~p~f~~---------p~-~tl~~Lle~G~~lv~E-Qe~V~~~~L 231 (293)
..|..+|..+| +|-|||+-.+= .++.|.|.+ .+ .+|+.+|...+.-..+ |+....+++
T Consensus 83 s~it~~Vq~tG~~VlsGGLDaLE~IGKKTM~VL~E~DPG~kktr~l~~~~~~~~~~LSqvLREAKekae~~e~~~~q~~~ 162 (181)
T PF05334_consen 83 SSITKVVQNTGKKVLSGGLDALEFIGKKTMDVLQEGDPGFKKTRALMGLEANRPSNLSQVLREAKEKAEELERTAQQVQS 162 (181)
T ss_pred HHHHHHHHHHhhhhhcCcHHHHHHhhHHHHHHHhccCcccchhhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777664 67888887752 455566544 45 4999999999998544 666665554
Q ss_pred H
Q 022739 232 A 232 (293)
Q Consensus 232 s 232 (293)
.
T Consensus 163 e 163 (181)
T PF05334_consen 163 E 163 (181)
T ss_pred H
Confidence 4
No 81
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.24 E-value=56 Score=30.95 Aligned_cols=93 Identities=15% Similarity=0.279 Sum_probs=62.3
Q ss_pred cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCC
Q 022739 38 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 117 (293)
Q Consensus 38 ~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDG 117 (293)
.|+--+++|.+.| ++ +.+..|+=|-.|-+.| +.+-+|.++++.+.|..+|. +
T Consensus 117 ~~~~kviIIDEa~----~l--------~~~a~naLLk~lEe~~--------------~~~~fIl~t~~~~~l~~tI~--S 168 (363)
T PRK14961 117 KSRFKVYLIDEVH----ML--------SRHSFNALLKTLEEPP--------------QHIKFILATTDVEKIPKTIL--S 168 (363)
T ss_pred cCCceEEEEEChh----hc--------CHHHHHHHHHHHhcCC--------------CCeEEEEEcCChHhhhHHHH--h
Confidence 4667788988854 33 2233444444444433 35678888899999887764 5
Q ss_pred CccccccCc-CCccchhhhhcccccCC--CChHHHHHHhhhCCC
Q 022739 118 RMEKFYWAP-TREDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 158 (293)
Q Consensus 118 RMeKFYW~P-tred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp~ 158 (293)
|.-.|.-.| +.++...+++.+++..| ++++.+..|+....|
T Consensus 169 Rc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G 212 (363)
T PRK14961 169 RCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG 212 (363)
T ss_pred hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 566777765 68888889999988877 556666666665543
No 82
>PRK08116 hypothetical protein; Validated
Probab=20.04 E-value=1.3e+02 Score=27.57 Aligned_cols=50 Identities=32% Similarity=0.424 Sum_probs=27.8
Q ss_pred HHHh-cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCc
Q 022739 34 DIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 106 (293)
Q Consensus 34 e~ik-~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDf 106 (293)
++++ --+.-+|+|.||.+- + .|.+ ...+|.||-|+=. ....|+|+|.|--
T Consensus 171 ~~~~~l~~~dlLviDDlg~e--~---~t~~------~~~~l~~iin~r~------------~~~~~~IiTsN~~ 221 (268)
T PRK08116 171 EIIRSLVNADLLILDDLGAE--R---DTEW------AREKVYNIIDSRY------------RKGLPTIVTTNLS 221 (268)
T ss_pred HHHHHhcCCCEEEEecccCC--C---CCHH------HHHHHHHHHHHHH------------HCCCCEEEECCCC
Confidence 3444 335568999998431 1 1222 2345556655311 2345899999843
Done!