Query 022739
Match_columns 293
No_of_seqs 85 out of 87
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 10:20:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3thg_A Ribulose bisphosphate c 100.0 9.2E-53 3.1E-57 342.2 5.6 102 127-228 6-107 (107)
2 3t15_A Ribulose bisphosphate c 100.0 3.7E-48 1.3E-52 338.5 11.7 234 1-234 60-293 (293)
3 4b4t_L 26S protease subunit RP 97.9 2.1E-05 7.1E-10 75.1 6.9 142 2-158 240-385 (437)
4 4b4t_J 26S protease regulatory 97.8 0.00016 5.6E-09 68.8 12.1 142 2-158 207-352 (405)
5 4b4t_H 26S protease regulatory 97.8 0.00011 3.8E-09 71.4 10.9 142 2-158 268-413 (467)
6 4b4t_K 26S protease regulatory 97.8 1.6E-05 5.6E-10 75.5 4.9 142 2-158 231-377 (428)
7 4b4t_M 26S protease regulatory 97.7 0.00015 5.1E-09 69.1 9.6 142 2-158 240-385 (434)
8 4b4t_I 26S protease regulatory 97.7 0.00028 9.6E-09 68.1 11.3 142 2-158 241-386 (437)
9 3cf2_A TER ATPase, transitiona 97.5 7.1E-05 2.4E-09 76.4 5.2 142 1-158 535-681 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.0014 4.8E-08 58.0 11.0 140 2-159 71-214 (322)
11 3eie_A Vacuolar protein sortin 97.3 0.0017 5.7E-08 56.8 10.1 164 2-184 76-244 (322)
12 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.0011 3.6E-08 54.4 7.9 128 2-145 64-196 (262)
13 3h4m_A Proteasome-activating n 97.0 0.0027 9.1E-08 53.2 8.7 141 2-157 76-220 (285)
14 2zan_A Vacuolar protein sortin 96.8 0.0057 1.9E-07 56.7 10.1 162 2-182 193-359 (444)
15 3vfd_A Spastin; ATPase, microt 96.8 0.0035 1.2E-07 56.2 7.9 142 2-160 173-318 (389)
16 2qp9_X Vacuolar protein sortin 96.7 0.002 6.9E-08 57.8 6.1 140 2-159 109-252 (355)
17 3cf2_A TER ATPase, transitiona 96.7 0.0041 1.4E-07 63.6 8.9 141 1-158 262-405 (806)
18 1ypw_A Transitional endoplasmi 96.6 0.0015 5E-08 65.6 4.9 126 2-143 536-665 (806)
19 3d8b_A Fidgetin-like protein 1 96.5 0.009 3.1E-07 53.3 8.3 142 2-160 142-287 (357)
20 1lv7_A FTSH; alpha/beta domain 96.3 0.02 6.8E-07 47.6 9.2 140 3-158 71-215 (257)
21 3cf0_A Transitional endoplasmi 96.3 0.0015 5.3E-08 56.6 2.2 127 2-144 74-204 (301)
22 2r62_A Cell division protease 96.2 0.0051 1.7E-07 51.2 4.8 126 3-143 70-200 (268)
23 3b9p_A CG5977-PA, isoform A; A 96.1 0.025 8.4E-07 47.8 8.8 142 2-159 79-224 (297)
24 3hu3_A Transitional endoplasmi 95.6 0.019 6.5E-07 54.7 6.8 139 2-157 263-404 (489)
25 2ce7_A Cell division protein F 95.1 0.061 2.1E-06 51.6 8.3 143 2-160 74-221 (476)
26 2x8a_A Nuclear valosin-contain 94.8 0.093 3.2E-06 45.6 8.1 122 2-141 69-193 (274)
27 1ypw_A Transitional endoplasmi 93.6 0.25 8.4E-06 49.7 9.3 139 2-157 263-404 (806)
28 1um8_A ATP-dependent CLP prote 93.6 0.11 3.9E-06 45.8 6.1 177 2-185 97-319 (376)
29 1d2n_A N-ethylmaleimide-sensit 93.0 0.36 1.2E-05 40.5 7.9 129 16-158 100-228 (272)
30 3syl_A Protein CBBX; photosynt 91.7 0.13 4.6E-06 43.2 3.9 114 4-142 101-220 (309)
31 1sxj_A Activator 1 95 kDa subu 83.0 0.18 6E-06 47.4 -0.9 95 38-159 146-244 (516)
32 2chg_A Replication factor C sm 81.4 0.83 2.9E-05 34.9 2.5 95 38-160 100-197 (226)
33 1njg_A DNA polymerase III subu 80.0 2 6.9E-05 33.0 4.3 95 38-160 124-221 (250)
34 1sxj_B Activator 1 37 kDa subu 79.8 1.4 4.6E-05 36.7 3.5 118 38-183 105-231 (323)
35 2dhr_A FTSH; AAA+ protein, hex 79.7 5.3 0.00018 38.5 8.0 141 3-160 90-236 (499)
36 3u61_B DNA polymerase accessor 78.4 1.7 5.9E-05 37.0 3.8 111 22-159 86-208 (324)
37 1ofh_A ATP-dependent HSL prote 78.3 3.2 0.00011 34.4 5.3 160 3-184 76-247 (310)
38 1jbk_A CLPB protein; beta barr 76.5 0.74 2.5E-05 34.4 0.9 87 27-135 101-194 (195)
39 3m6a_A ATP-dependent protease 75.1 3.4 0.00012 39.5 5.2 106 42-158 177-297 (543)
40 1fnn_A CDC6P, cell division co 74.6 3.5 0.00012 35.2 4.7 97 38-156 123-227 (389)
41 2chq_A Replication factor C sm 74.4 2.7 9.2E-05 34.8 3.8 95 38-160 100-197 (319)
42 3hws_A ATP-dependent CLP prote 72.2 1.2 4.2E-05 39.1 1.3 178 2-183 76-300 (363)
43 1iqp_A RFCS; clamp loader, ext 71.3 2.7 9.3E-05 34.9 3.1 96 39-162 109-207 (327)
44 1qvr_A CLPB protein; coiled co 67.6 4.1 0.00014 40.7 4.0 136 3-166 227-387 (854)
45 1ixz_A ATP-dependent metallopr 61.9 13 0.00044 30.6 5.4 139 6-160 78-221 (254)
46 3pfi_A Holliday junction ATP-d 61.4 28 0.00097 29.6 7.6 108 38-160 104-220 (338)
47 2v1u_A Cell division control p 59.5 12 0.00041 31.6 4.9 88 31-139 120-214 (387)
48 2c9o_A RUVB-like 1; hexameric 55.5 2.9 0.0001 38.5 0.5 51 3-55 91-141 (456)
49 1kyq_A Met8P, siroheme biosynt 53.4 3.6 0.00012 37.0 0.7 103 71-222 134-254 (274)
50 3uk6_A RUVB-like 2; hexameric 53.2 14 0.00048 31.7 4.4 38 13-50 157-199 (368)
51 2qby_B CDC6 homolog 3, cell di 52.1 20 0.00067 30.7 5.1 58 95-154 163-229 (384)
52 3pvs_A Replication-associated 49.9 16 0.00054 34.2 4.5 110 20-159 86-207 (447)
53 1iy2_A ATP-dependent metallopr 48.7 37 0.0013 28.5 6.2 65 96-160 178-245 (278)
54 2qby_A CDC6 homolog 1, cell di 48.3 23 0.00078 29.8 4.8 57 30-107 117-174 (386)
55 3bos_A Putative DNA replicatio 44.7 9.2 0.00031 30.0 1.7 63 98-160 140-210 (242)
56 4fcw_A Chaperone protein CLPB; 44.1 20 0.00067 29.9 3.7 57 35-106 114-170 (311)
57 1r6b_X CLPA protein; AAA+, N-t 42.6 82 0.0028 30.6 8.3 106 26-154 264-383 (758)
58 3pxi_A Negative regulator of g 37.1 1.2E+02 0.0042 29.5 8.6 149 4-185 551-704 (758)
59 3bq7_A Diacylglycerol kinase d 34.5 11 0.00039 27.5 0.8 52 174-227 13-64 (81)
60 2eam_A Putative 47 kDa protein 32.0 9.8 0.00034 27.8 0.0 59 170-228 9-68 (80)
61 2p65_A Hypothetical protein PF 28.7 60 0.0021 24.0 3.9 25 28-52 102-127 (187)
62 2lmr_A ODIN, ankyrin repeat an 27.3 29 0.001 27.1 2.0 57 170-228 26-85 (101)
63 1x40_A ARAP2; ASAP-related pro 26.9 26 0.00091 26.4 1.7 61 173-235 15-77 (91)
64 1vpb_A Putative modulator of D 26.8 33 0.0011 31.9 2.6 108 21-128 222-358 (451)
65 1sxj_D Activator 1 41 kDa subu 26.4 25 0.00087 29.6 1.6 63 95-159 162-227 (353)
66 2dl0_A SAM and SH3 domain-cont 25.4 35 0.0012 26.3 2.1 53 174-228 24-77 (97)
67 1a5t_A Delta prime, HOLB; zinc 24.2 1.2E+02 0.004 26.4 5.5 92 38-160 106-198 (334)
68 1ub1_A MECP2, attachment regio 23.5 43 0.0015 28.1 2.4 31 117-159 56-86 (133)
69 1sxj_E Activator 1 40 kDa subu 23.3 14 0.00049 31.4 -0.5 63 95-159 163-229 (354)
70 2f3n_A SH3 and multiple ankyri 23.1 38 0.0013 24.3 1.8 52 174-227 8-59 (76)
71 2dl1_A Spartin; SPG20, MIT, st 22.9 53 0.0018 26.9 2.8 24 16-39 4-29 (116)
72 3tv9_A Putative peptide matura 22.8 52 0.0018 31.1 3.2 108 20-127 228-366 (457)
73 3qtd_A PMBA protein; putative 22.5 51 0.0017 30.9 3.0 108 20-128 217-356 (449)
74 2o5g_B CAM, smooth muscle myos 22.3 30 0.001 22.2 1.0 21 24-44 1-22 (26)
75 3pxi_A Negative regulator of g 21.9 81 0.0028 30.8 4.4 74 95-170 290-384 (758)
76 3pxg_A Negative regulator of g 21.8 1.2E+02 0.0039 28.2 5.2 57 96-154 291-359 (468)
77 2e8o_A SAM domain and HD domai 21.5 53 0.0018 25.0 2.4 50 174-226 33-85 (103)
78 1v38_A SAM-domain protein sams 20.8 23 0.0008 25.9 0.3 55 172-228 11-66 (78)
79 1jr3_A DNA polymerase III subu 20.7 29 0.00099 29.5 0.9 102 38-167 117-221 (373)
No 1
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=100.00 E-value=9.2e-53 Score=342.22 Aligned_cols=102 Identities=85% Similarity=1.341 Sum_probs=96.6
Q ss_pred CCccchhhhhcccccCCCChHHHHHHhhhCCCCcchhHhhhhhhhhhHHHHHHHhhhcccccccccccCCCCCCcccCCc
Q 022739 127 TREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPR 206 (293)
Q Consensus 127 tred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q~iDFFGALRaR~YDd~Vr~wi~~vG~e~ig~~lvns~~~~p~f~~p~ 206 (293)
|||||++||+|||++||+|++||++|||+||+||||||||||||+||++||+||+++|+|+||++||||+++||+|++|+
T Consensus 6 treDrigiv~gif~~Dgls~~dv~~LVd~Fp~QsiDFFGALRsR~YDd~Vr~wI~~vG~e~ig~~Lvns~e~~P~F~~P~ 85 (107)
T 3thg_A 6 TREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPK 85 (107)
T ss_dssp CHHHHHHHHHHHTTTTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCC
T ss_pred cHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchHHHHHHHHHhHHHHHHHHHHhCHHHHhHHHHcCCCCCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q 022739 207 MTMEKLLEYGNMIVQEQENVKR 228 (293)
Q Consensus 207 ~tl~~Lle~G~~lv~EQe~V~~ 228 (293)
|||++|||+|++|++||||||+
T Consensus 86 ~tl~~Lle~G~~Lv~EQ~~V~~ 107 (107)
T 3thg_A 86 MTIDKLLGYGGMLVQEQENVKR 107 (107)
T ss_dssp CCHHHHHHHHHHHHTTC-----
T ss_pred CCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986
No 2
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=100.00 E-value=3.7e-48 Score=338.53 Aligned_cols=234 Identities=87% Similarity=1.375 Sum_probs=199.8
Q ss_pred CCCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCC
Q 022739 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 1 MGi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
+|...+.+|+++|.+++.|++.+.||+.|++|++++++.+.|+|||.|||+..+++++.++.++++|.+..+|+++.|++
T Consensus 60 l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~ 139 (293)
T 3t15_A 60 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 139 (293)
T ss_dssp HTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCC
T ss_pred hCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccc
Confidence 36788999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccccCcCCccchhhhhcccccCCCChHHHHHHhhhCCCCc
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQS 160 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q~ 160 (293)
+.+++++.|...+..+|+||.|.|+.++|..+|+|.||||+++|-|+.++|..|++.++..++++.+++.++++.|+++.
T Consensus 140 ~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~ 219 (293)
T 3t15_A 140 TNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQS 219 (293)
T ss_dssp C-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEECCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCC
T ss_pred cccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeCcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCccc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhhhhhhhhhHHHHHHHhhhcccccccccccCCCCCCcccCCcCCHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 022739 161 IDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADK 234 (293)
Q Consensus 161 iDFFGALRaR~YDd~Vr~wi~~vG~e~ig~~lvns~~~~p~f~~p~~tl~~Lle~G~~lv~EQe~V~~~~Ls~e 234 (293)
||||+|||+|+||++|++|+.+.|++++.++++++++++|.|.+|++|+++|+|+|+.|++||++|++++|+++
T Consensus 220 l~~~~~l~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~eq~~~~~~~l~~~ 293 (293)
T 3t15_A 220 IDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTCHHHHTSCSSCSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999974
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=2.1e-05 Score=75.08 Aligned_cols=142 Identities=24% Similarity=0.285 Sum_probs=101.5
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCC-CCcceeecchhhhhhhhhhccCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~-~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
|+.-+.+|+++|-|.+-|+-.++||.-+..|.. -..|+|||.++|+=.++-+ +++...-..+.+..+|+|.-|.-
T Consensus 240 ~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~----~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 240 GANFIFSPASGIVDKYIGESARIIREMFAYAKE----HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp TCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHH----SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEehhhhccccchHHHHHHHHHHHHHHh----cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 677889999999999999999999988877754 5789999999999766542 22221111223334566655532
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCCC-hHHHHHHhhhCC
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFP 157 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~~-~~dv~~LVd~Fp 157 (293)
....+|-||.|-|....|=.-|+|-||+|+.+. -|+.+.|..|++..++.-.++ .-|+..|+..-+
T Consensus 316 -----------~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~ 384 (437)
T 4b4t_L 316 -----------DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSD 384 (437)
T ss_dssp -----------SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCC
T ss_pred -----------cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCC
Confidence 123578899999999998888999999997655 388899999987666543332 345666666554
Q ss_pred C
Q 022739 158 G 158 (293)
Q Consensus 158 ~ 158 (293)
|
T Consensus 385 G 385 (437)
T 4b4t_L 385 G 385 (437)
T ss_dssp S
T ss_pred C
Confidence 4
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00016 Score=68.77 Aligned_cols=142 Identities=20% Similarity=0.277 Sum_probs=104.2
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCC-CCcceeecchhhhhhhhhhccCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~-~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
|+.-+.+|+.+|-|.|-||-.++||+=+..|. +-..|+|||.++||=.++-+ +.+.-.-..+-+..+|+|.-|.-
T Consensus 207 ~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar----~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 207 DCKFIRVSGAELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp TCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHH----HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred CCCceEEEhHHhhccccchHHHHHHHHHHHHH----HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 56778999999999999999999998777665 45789999999999766542 22221111223345677766632
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCCCh-HHHHHHhhhCC
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFP 157 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~~~-~dv~~LVd~Fp 157 (293)
....+|-||.|-|....|=.-|+|-||+|+-.. -|+.+.|..|.+-..+.-.++. -|+..|....+
T Consensus 283 -----------~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~ 351 (405)
T 4b4t_J 283 -----------ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMN 351 (405)
T ss_dssp -----------TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCC
T ss_pred -----------CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCC
Confidence 124578899999999998877999999997543 4899999999987766655543 36777777766
Q ss_pred C
Q 022739 158 G 158 (293)
Q Consensus 158 ~ 158 (293)
|
T Consensus 352 G 352 (405)
T 4b4t_J 352 G 352 (405)
T ss_dssp S
T ss_pred C
Confidence 5
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00011 Score=71.38 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=102.6
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCC-CCcceeecchhhhhhhhhhccCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~-~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
|+.-+.+|+.+|-|.+-|+-.++||+-+..|.. -..|+|||-++|+-.++-+ +.+.....-+.+..+|+|.-|.-
T Consensus 268 ~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 268 DATFIRVIGSELVQKYVGEGARMVRELFEMART----KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp TCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHH----TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred CCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHh----cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 567789999999999999999999988887754 4689999999999876542 22222222233344566655521
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCCCh-HHHHHHhhhCC
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFP 157 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~~~-~dv~~LVd~Fp 157 (293)
....+|-+|.|=|....|=.-|+|-||+|+-+. -|+.+.|..|.+...+.-.++. -|++.|...-+
T Consensus 344 -----------~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~ 412 (467)
T 4b4t_H 344 -----------DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCP 412 (467)
T ss_dssp -----------CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCC
T ss_pred -----------CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCC
Confidence 234578899999999988777999999998655 3899999999877666544432 35666666555
Q ss_pred C
Q 022739 158 G 158 (293)
Q Consensus 158 ~ 158 (293)
|
T Consensus 413 G 413 (467)
T 4b4t_H 413 N 413 (467)
T ss_dssp S
T ss_pred C
Confidence 4
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=1.6e-05 Score=75.49 Aligned_cols=142 Identities=20% Similarity=0.265 Sum_probs=101.9
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCC-CCcceeecchhhhhhhhhhccCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~-~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
|+.-+.+|+.+|-+.+-|+-.+.||+-+..|.+ -..|+|||.++|+-.+.-+ ..+...-..+-+..+|+|.-|.-
T Consensus 231 ~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~----~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 231 KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp TCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHH----TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred CCCeEEEecchhhccccchhHHHHHHHHHHHHH----cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 667789999999999999999999988877654 4689999999999766542 11111111123345677766642
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccc-ccc--CcCCccchhhhhcccccCCCC-hHHHHHHhhhC
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK-FYW--APTREDRIGVCKGIFRNDNVA-DDDIVKLVDTF 156 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeK-FYW--~Ptred~i~iv~~if~~Dg~~-~~dv~~LVd~F 156 (293)
. ...+|-||.|-|....|=.-|+|-||+|+ ++. -|+++.|..|.+.+.+.-.++ ..|+..|+..-
T Consensus 307 ~-----------~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t 375 (428)
T 4b4t_K 307 D-----------QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRN 375 (428)
T ss_dssp C-----------SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHT
T ss_pred C-----------CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHC
Confidence 1 13458899999999999888999999995 555 388999999988777655544 33566776655
Q ss_pred CC
Q 022739 157 PG 158 (293)
Q Consensus 157 p~ 158 (293)
+|
T Consensus 376 ~G 377 (428)
T 4b4t_K 376 DS 377 (428)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00015 Score=69.14 Aligned_cols=142 Identities=21% Similarity=0.252 Sum_probs=99.3
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCc-CCCCcceeecchhhhhhhhhhccCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR-MGGTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Gr-f~~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
|+.-+.+|+.+|-+.+-|+-.++||.=+..|.+. ..|+|||.++|+=.+. .++.+...-.-+.+..+|+|.-|.-
T Consensus 240 ~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~----aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEK----APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp TCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHH----CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEehhhhhhcccchHHHHHHHHHHHHHhc----CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 5677899999999999999999999888776653 5799999999985543 3322221112233345677766532
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccc--cCcCCccchhhhhcccccCCCCh-HHHHHHhhhCC
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFP 157 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFY--W~Ptred~i~iv~~if~~Dg~~~-~dv~~LVd~Fp 157 (293)
....+|-||.|=|....|=.-|+|-||+|+-. =-|+.+.|..|.+...+.-.++. -|+..|....+
T Consensus 316 -----------~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~ 384 (434)
T 4b4t_M 316 -----------SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTD 384 (434)
T ss_dssp -----------CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCS
T ss_pred -----------CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCC
Confidence 12356888999999998887799999999744 34899999999876655433332 24555655554
Q ss_pred C
Q 022739 158 G 158 (293)
Q Consensus 158 ~ 158 (293)
|
T Consensus 385 G 385 (434)
T 4b4t_M 385 E 385 (434)
T ss_dssp S
T ss_pred C
Confidence 4
No 8
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00028 Score=68.14 Aligned_cols=142 Identities=20% Similarity=0.242 Sum_probs=102.6
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCC-CCcceeecchhhhhhhhhhccCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~-~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
|+.-+.+|+.+|-|.+-||-.++||.-+..|.+ -..|+|||.++||=.+.=+ +.+...-..+.+..+|+|.-|.-
T Consensus 241 ~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 241 SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGE----NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp TCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHH----TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEHHHhhhccCchHHHHHHHHHHHHHh----cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 567789999999999999999999998887754 4689999999999766432 22222222233445677766621
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCCCh-HHHHHHhhhCC
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFP 157 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~~~-~dv~~LVd~Fp 157 (293)
+...+|=||.|=|....|=.-|+|-||+|+-.. -|+.+.|..|.+...+.-.++. -|+..|+..-+
T Consensus 317 -----------~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~ 385 (437)
T 4b4t_I 317 -----------DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKD 385 (437)
T ss_dssp -----------CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCC
T ss_pred -----------CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCC
Confidence 223467789999999998888999999996432 3899999999987776555543 35666666554
Q ss_pred C
Q 022739 158 G 158 (293)
Q Consensus 158 ~ 158 (293)
|
T Consensus 386 G 386 (437)
T 4b4t_I 386 D 386 (437)
T ss_dssp S
T ss_pred C
Confidence 4
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.51 E-value=7.1e-05 Score=76.44 Aligned_cols=142 Identities=23% Similarity=0.349 Sum_probs=86.9
Q ss_pred CCCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCC--cceeecchhhhhhhhhhcc
Q 022739 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIAD 78 (293)
Q Consensus 1 MGi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~--TQ~TVNnQ~V~aTLMNiaD 78 (293)
+|.+-+.+|+.+|-|.|-||..+.||+=+.+| ++-+.|+|||.++|+=++.-+.+ ..-.+-.+++ .+|++.-|
T Consensus 535 ~~~~f~~v~~~~l~s~~vGese~~vr~lF~~A----r~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~-~~lL~~md 609 (806)
T 3cf2_A 535 CQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVI-NQILTEMD 609 (806)
T ss_dssp TTCEEEECCHHHHHTTTCSSCHHHHHHHHHHH----HTTCSEEEECSCGGGCC--------------CHHH-HHHHHHHH
T ss_pred hCCceEEeccchhhccccchHHHHHHHHHHHH----HHcCCceeechhhhHHhhccCCCCCCCchHHHHHH-HHHHHHHh
Confidence 36677899999999999999999999988877 45678999999999977654321 1112223333 45666555
Q ss_pred CCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccc--cccCcCCccchhhhhcccccCCCC-hHHHHHHhhh
Q 022739 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVA-DDDIVKLVDT 155 (293)
Q Consensus 79 nPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeK--FYW~Ptred~i~iv~~if~~Dg~~-~~dv~~LVd~ 155 (293)
.-. ...+|=||.|-|....|=.-|+|-||+|| ++--|+.++|..|++.+++.-.+. ..|+..|...
T Consensus 610 g~~-----------~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~ 678 (806)
T 3cf2_A 610 GMS-----------TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678 (806)
T ss_dssp SSC-----------SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------
T ss_pred CCC-----------CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHh
Confidence 321 23457778888998888777999999998 445599999999999988876554 3466777665
Q ss_pred CCC
Q 022739 156 FPG 158 (293)
Q Consensus 156 Fp~ 158 (293)
.+|
T Consensus 679 t~g 681 (806)
T 3cf2_A 679 TNG 681 (806)
T ss_dssp ---
T ss_pred CCC
Confidence 443
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.36 E-value=0.0014 Score=58.01 Aligned_cols=140 Identities=18% Similarity=0.218 Sum_probs=100.9
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
+...+.+++.+|-+.+.|+..+.+|.-+..| ++.+.|+|||.++|+=.+.-+. .+..+..++++ .|++.-|.-.
T Consensus 71 ~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a----~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~-~ll~~ld~~~ 144 (322)
T 1xwi_A 71 NSTFFSISSSDLVSKWLGESEKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSE-NESEAARRIKT-EFLVQMQGVG 144 (322)
T ss_dssp SCEEEEEECCSSCCSSCCSCHHHHHHHHHHH----HHTSSEEEEEETTTGGGCCSSS-CCTTHHHHHHH-HHHHHHHCSS
T ss_pred CCcEEEEEhHHHHhhhhhHHHHHHHHHHHHH----HhcCCcEEEeecHHHhcccccc-ccchHHHHHHH-HHHHHHhccc
Confidence 4456788999999999999999888766554 4578899999999987765542 23333333443 3444444311
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccc--ccCcCCccchhhhhcccccCC--CChHHHHHHhhhCC
Q 022739 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDN--VADDDIVKLVDTFP 157 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKF--YW~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp 157 (293)
.+..+|-||.|.|....|=..|.| |.++. .--|+.++|..|+..+++.-+ ++..++..|.....
T Consensus 145 ----------~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~ 212 (322)
T 1xwi_A 145 ----------VDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTD 212 (322)
T ss_dssp ----------SCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCT
T ss_pred ----------ccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 123578899999998877777888 88763 345899999999998887654 47889999998877
Q ss_pred CC
Q 022739 158 GQ 159 (293)
Q Consensus 158 ~Q 159 (293)
|-
T Consensus 213 G~ 214 (322)
T 1xwi_A 213 GY 214 (322)
T ss_dssp TC
T ss_pred CC
Confidence 64
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.25 E-value=0.0017 Score=56.84 Aligned_cols=164 Identities=20% Similarity=0.197 Sum_probs=108.0
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
+...+.+++.+|-+.+.|+..+++|.-+..| ++.+.|+|||.|+|+=.+.-+ ..+..+...+++ .|.+.-++-.
T Consensus 76 ~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~~~-~~~~~~~~~~~~-~ll~~l~~~~ 149 (322)
T 3eie_A 76 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKPSIIFIDQVDALTGTRG-EGESEASRRIKT-ELLVQMNGVG 149 (322)
T ss_dssp TCEEEEEEHHHHHTTTGGGHHHHHHHHHHHH----HHTSSEEEEEECGGGGSCC-------CCTHHHHH-HHHHHHGGGG
T ss_pred CCCEEEEchHHHhhcccchHHHHHHHHHHHH----HhcCCeEEEechhhhhhccCC-CCcchHHHHHHH-HHHHHhcccc
Confidence 4556788999999999999999998776655 356789999999997655443 234444444443 3333333211
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccc--cCcCCccchhhhhcccccCC--CChHHHHHHhhhCC
Q 022739 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVCKGIFRNDN--VADDDIVKLVDTFP 157 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFY--W~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp 157 (293)
.....|-||.|-|....|=..|.| |.++.+ =-|+.++|..|+..+++..+ ++.+++..|.....
T Consensus 150 ----------~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~ 217 (322)
T 3eie_A 150 ----------NDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTE 217 (322)
T ss_dssp ----------TSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTT
T ss_pred ----------ccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcC
Confidence 123457788899988877655666 887633 34999999999998888765 57889999998877
Q ss_pred CCcc-hhHhhhhhhhhhHHHHHHHhhhc
Q 022739 158 GQSI-DFFGALRARVYDDEVRKWISGVG 184 (293)
Q Consensus 158 ~Q~i-DFFGALRaR~YDd~Vr~wi~~vG 184 (293)
+-+- |.. +|-.+..=..+|+.+..+.
T Consensus 218 g~sg~di~-~l~~~a~~~a~r~~~~~~~ 244 (322)
T 3eie_A 218 GYSGSDIA-VVVKDALMQPIRKIQSATH 244 (322)
T ss_dssp TCCHHHHH-HHHHHHTTHHHHHHHHCEE
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHhhhhh
Confidence 6544 332 3333334456777766543
No 12
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.21 E-value=0.0011 Score=54.44 Aligned_cols=128 Identities=20% Similarity=0.297 Sum_probs=82.5
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceee---cchhhhhhhhhhcc
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTV---NNQMVNATLMNIAD 78 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TV---NnQ~V~aTLMNiaD 78 (293)
|...+.+++.++-+...|+..+.++.-+..|. +.+-|+|||.|+|.=.+.-+ .++... ..|-.-..|++.-+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~vl~iDeid~l~~~~~-~~~~~~~~~~~~~~l~~ll~~~~ 138 (262)
T 2qz4_A 64 QVPFLAMAGAEFVEVIGGLGAARVRSLFKEAR----ARAPCIVYIDEIDAVGKKRS-TTMSGFSNTEEEQTLNQLLVEMD 138 (262)
T ss_dssp TCCEEEEETTTTSSSSTTHHHHHHHHHHHHHH----HTCSEEEEEECC--------------------CHHHHHHHHHHH
T ss_pred CCCEEEechHHHHhhccChhHHHHHHHHHHHH----hcCCeEEEEeCcchhhcccc-ccccCccchhHHHHHHHHHHHhh
Confidence 44567788899988899998888876665543 45679999999997544332 111111 11222234444333
Q ss_pred CCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCCC
Q 022739 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA 145 (293)
Q Consensus 79 nPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~~ 145 (293)
.- ....++.||.|.|....|=..|.|.||++..+. -|+.++|..|+...++.-++.
T Consensus 139 ~~-----------~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~ 196 (262)
T 2qz4_A 139 GM-----------GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT 196 (262)
T ss_dssp TC-----------CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC
T ss_pred Cc-----------CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC
Confidence 21 113478899999998888778999999987766 699999999998887766655
No 13
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.02 E-value=0.0027 Score=53.21 Aligned_cols=141 Identities=23% Similarity=0.252 Sum_probs=91.4
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCC-CcceeecchhhhhhhhhhccCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGG-TTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~-~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
+...+.+++.++-+.+.|+..+.++.-+..| +.++.++|||.|+|.=.++-.+ .....-..|-.-.+|++.-+.-
T Consensus 76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 76 NATFIRVVGSELVKKFIGEGASLVKDIFKLA----KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp TCEEEEEEGGGGCCCSTTHHHHHHHHHHHHH----HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEehHHHHHhccchHHHHHHHHHHHH----HHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 4556778899999999999888877665544 4567899999999986544321 1111112233333344433211
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCCCh-HHHHHHhhhCC
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFP 157 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~~~-~dv~~LVd~Fp 157 (293)
....++.||.|.|....|-..|.|-||.+..+. .|+.+++..|+...++.-++.. .++..|...-.
T Consensus 152 -----------~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~ 220 (285)
T 3h4m_A 152 -----------DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTE 220 (285)
T ss_dssp -----------CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCT
T ss_pred -----------CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcC
Confidence 112468899999999888888999999875333 4899999999987776555432 23444444433
No 14
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.84 E-value=0.0057 Score=56.71 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=100.2
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
|...+.+++.+|-+.+.|+..+.+|.-+..| +..+.|+|||.++|+=.+.-+. .+..+...+++ +|++.-|.-
T Consensus 193 ~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~-~lL~~l~~~- 265 (444)
T 2zan_A 193 NSTFFSISSSDLVSKWLGESEKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSE-NESEAARRIKT-EFLVQMQGV- 265 (444)
T ss_dssp SSEEEEECCC---------CCCTHHHHHHHH----HHSCSEEEEESCTTTTCCCSSC-CCCGGGHHHHH-HHHTTTTCS-
T ss_pred CCCEEEEeHHHHHhhhcchHHHHHHHHHHHH----HHcCCeEEEEechHhhccCCCC-ccccHHHHHHH-HHHHHHhCc-
Confidence 4556778999999999999988887766544 4567899999999987654432 23333333333 344433321
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCC--CChHHHHHHhhhCC
Q 022739 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFP 157 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp 157 (293)
..+..+|-||.|.|....|=..|.| |.++.+. -|+.++|..|++.+++.-+ ++..++..|.....
T Consensus 266 ---------~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~ 334 (444)
T 2zan_A 266 ---------GVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTD 334 (444)
T ss_dssp ---------SCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTT
T ss_pred ---------ccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 1124578999999998777666777 8876443 3888999999988876654 57889999999887
Q ss_pred CCcc-hhHhhhhhhhhhHHHHHHHhh
Q 022739 158 GQSI-DFFGALRARVYDDEVRKWISG 182 (293)
Q Consensus 158 ~Q~i-DFFGALRaR~YDd~Vr~wi~~ 182 (293)
|-+- |.-..++ +..-..||+.+..
T Consensus 335 G~sgadl~~l~~-~a~~~a~r~~~~~ 359 (444)
T 2zan_A 335 GYSGADISIIVR-DALMQPVRKVQSA 359 (444)
T ss_dssp TCCHHHHHHHHH-HHHTHHHHHHHHC
T ss_pred CCCHHHHHHHHH-HHHHHHHHHHHhh
Confidence 7443 4443333 2333456665543
No 15
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.78 E-value=0.0035 Score=56.22 Aligned_cols=142 Identities=19% Similarity=0.236 Sum_probs=86.7
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
|...+.+++.+|-+.+.|+..++++.-+..|. ..+.++|||.|+|.=.+.-. .........+.+ .|.+.-+.
T Consensus 173 ~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~il~iDEid~l~~~~~-~~~~~~~~~~~~-~ll~~l~~-- 244 (389)
T 3vfd_A 173 NATFFNISAASLTSKYVGEGEKLVRALFAVAR----ELQPSIIFIDQVDSLLCERR-EGEHDASRRLKT-EFLIEFDG-- 244 (389)
T ss_dssp TCEEEEECSCCC-------CHHHHHHHHHHHH----HSSSEEEEEETGGGGC---------CTHHHHHH-HHHHHHHH--
T ss_pred cCcEEEeeHHHhhccccchHHHHHHHHHHHHH----hcCCeEEEEECchhhcccCC-CccchHHHHHHH-HHHHHhhc--
Confidence 56678899999999999999888877666553 45678999999996443322 122223333333 33333331
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccc--cCcCCccchhhhhcccccCC--CChHHHHHHhhhCC
Q 022739 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVCKGIFRNDN--VADDDIVKLVDTFP 157 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFY--W~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp 157 (293)
.......+|-||.|-|....|=..|.| |+++.+ =-|+.+++..|+..++...+ ++.+++..|+....
T Consensus 245 -------~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~ 315 (389)
T 3vfd_A 245 -------VQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTD 315 (389)
T ss_dssp -------HC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTT
T ss_pred -------ccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 112223578899999998888666777 887533 34899999999998887654 67888888888776
Q ss_pred CCc
Q 022739 158 GQS 160 (293)
Q Consensus 158 ~Q~ 160 (293)
+-+
T Consensus 316 g~~ 318 (389)
T 3vfd_A 316 GYS 318 (389)
T ss_dssp TCC
T ss_pred CCC
Confidence 643
No 16
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.75 E-value=0.002 Score=57.76 Aligned_cols=140 Identities=19% Similarity=0.215 Sum_probs=92.6
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
|...+.+++.+|-+.+.|+..+++|.-+..| +.++.|+|||.++|+=.+.-+ ..+..+...+++. |.+.-|.-
T Consensus 109 ~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~-~~~~~~~~~~~~~-ll~~l~~~- 181 (355)
T 2qp9_X 109 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKPSIIFIDQVDALTGTRG-EGESEASRRIKTE-LLVQMNGV- 181 (355)
T ss_dssp TCEEEEEEHHHHHSCC---CHHHHHHHHHHH----HHTSSEEEEEECGGGGTC-------CTHHHHHHHH-HHHHHHHC-
T ss_pred CCCEEEeeHHHHhhhhcchHHHHHHHHHHHH----HHcCCeEEEEechHhhcccCC-CCcchHHHHHHHH-HHHHhhcc-
Confidence 4456778888998999999999888766554 457889999999997555433 2233333444443 33332321
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccc--cCcCCccchhhhhcccccCC--CChHHHHHHhhhCC
Q 022739 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVCKGIFRNDN--VADDDIVKLVDTFP 157 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFY--W~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp 157 (293)
.....+|-||.|-|....|=..|.| |.++.+ =-|+.++|..|+..+++.-+ ++..+++.|.....
T Consensus 182 ---------~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~ 250 (355)
T 2qp9_X 182 ---------GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTE 250 (355)
T ss_dssp ---------C---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTT
T ss_pred ---------cccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcC
Confidence 1123568899999998877767777 887643 34889999999988887665 57889999998877
Q ss_pred CC
Q 022739 158 GQ 159 (293)
Q Consensus 158 ~Q 159 (293)
|-
T Consensus 251 G~ 252 (355)
T 2qp9_X 251 GY 252 (355)
T ss_dssp TC
T ss_pred CC
Confidence 64
No 17
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.72 E-value=0.0041 Score=63.65 Aligned_cols=141 Identities=23% Similarity=0.330 Sum_probs=102.3
Q ss_pred CCCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCC
Q 022739 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 1 MGi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
+|+..+.+++.+|-|.+.|+-.+.||+-+.+| ++...|+|||.+||+=...-+ .++-.+..+++ .+|+++-|.-
T Consensus 262 lg~~~~~v~~~~l~sk~~gese~~lr~lF~~A----~~~~PsIIfIDEiDal~~~r~-~~~~~~~~riv-~~LL~~mdg~ 335 (806)
T 3cf2_A 262 TGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPAIIFIDELDAIAPKRE-KTHGEVERRIV-SQLLTLMDGL 335 (806)
T ss_dssp TTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHH----TTSCSEEEEEESGGGTCCTTT-TCCCTTHHHHH-HHHHTHHHHC
T ss_pred hCCeEEEEEhHHhhcccchHHHHHHHHHHHHH----HHcCCeEEEEehhcccccccC-CCCChHHHHHH-HHHHHHHhcc
Confidence 47788899999999999999999998887776 456789999999999655443 23333333333 4455444432
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccc--cCcCCccchhhhhcccccCCCC-hHHHHHHhhhCC
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFP 157 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFY--W~Ptred~i~iv~~if~~Dg~~-~~dv~~LVd~Fp 157 (293)
. ...+|.||.|-|....|=.-|.|-||.|+-. =-|+.++|..|++.+.+.-.++ ..|+..|....+
T Consensus 336 ~-----------~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~ 404 (806)
T 3cf2_A 336 K-----------QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETH 404 (806)
T ss_dssp C-----------GGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCC
T ss_pred c-----------ccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcC
Confidence 1 1357999999999999887799999998632 2499999999998777654433 345667776666
Q ss_pred C
Q 022739 158 G 158 (293)
Q Consensus 158 ~ 158 (293)
+
T Consensus 405 G 405 (806)
T 3cf2_A 405 G 405 (806)
T ss_dssp S
T ss_pred C
Confidence 5
No 18
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.64 E-value=0.0015 Score=65.63 Aligned_cols=126 Identities=23% Similarity=0.337 Sum_probs=87.3
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcce--eecchhhhhhhhhhccC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQY--TVNNQMVNATLMNIADN 79 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~--TVNnQ~V~aTLMNiaDn 79 (293)
+...+.+++++|-+.+-|+..+.+|+-+..|... ..|+|||.++|+-.+..++.... .... -+..+|.+.-|.
T Consensus 536 ~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~-~v~~~LL~~ld~ 610 (806)
T 1ypw_A 536 QANFISIKGPELLTMWFGESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAAD-RVINQILTEMDG 610 (806)
T ss_dssp TCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHH----CSBCCCCSSHHHHCCTTTTCCSHHHHHHH-HHHHHHHTTCC-
T ss_pred CCCEEEEechHhhhhhcCccHHHHHHHHHHHHhc----CCeEEEEEChhhhhhhccCCCCCcchhHH-HHHHHHHHHHhc
Confidence 4556788999999999999999998877766443 46899999999977766532111 1111 222344444442
Q ss_pred CCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccc-cc-CcCCccchhhhhcccccCC
Q 022739 80 PTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF-YW-APTREDRIGVCKGIFRNDN 143 (293)
Q Consensus 80 Pt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKF-YW-~Ptred~i~iv~~if~~Dg 143 (293)
- .....|-||.|-|....|=..|+|-||+++. |- -|+.+++..|++..++...
T Consensus 611 ~-----------~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~ 665 (806)
T 1ypw_A 611 M-----------STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP 665 (806)
T ss_dssp ----------------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-
T ss_pred c-----------cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC
Confidence 1 1235788999999998888889999999853 33 3899999999998886543
No 19
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.46 E-value=0.009 Score=53.34 Aligned_cols=142 Identities=18% Similarity=0.266 Sum_probs=94.8
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
|...+.+++.+|-+.+.|+..+.+|.-+..| +..+.++|||.|+|+=.+.-.. .....+ .-+...|++.-++-.
T Consensus 142 ~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~-~~~~~~-~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 142 GATFFSISASSLTSKWVGEGEKMVRALFAVA----RCQQPAVIFIDEIDSLLSQRGD-GEHESS-RRIKTEFLVQLDGAT 215 (357)
T ss_dssp TCEEEEEEGGGGCCSSTTHHHHHHHHHHHHH----HHTCSEEEEEETHHHHTBC-------CHH-HHHHHHHHHHHHC--
T ss_pred CCeEEEEehHHhhccccchHHHHHHHHHHHH----HhcCCeEEEEeCchhhhccCCC-CcchHH-HHHHHHHHHHHhccc
Confidence 4566788999999999999888887665443 4567899999999975443221 111122 223334444433211
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccc--ccCcCCccchhhhhcccccCC--CChHHHHHHhhhCC
Q 022739 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDN--VADDDIVKLVDTFP 157 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKF--YW~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp 157 (293)
.....+|-||.|.|....|-..|.| |.++. .--|+.+++..++..+++..+ ++.+++..|+....
T Consensus 216 ---------~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~ 284 (357)
T 3d8b_A 216 ---------TSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSD 284 (357)
T ss_dssp -----------CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTT
T ss_pred ---------ccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcC
Confidence 1123578889899998887767777 88753 445899999999988887654 67888899988876
Q ss_pred CCc
Q 022739 158 GQS 160 (293)
Q Consensus 158 ~Q~ 160 (293)
+-+
T Consensus 285 G~s 287 (357)
T 3d8b_A 285 AFS 287 (357)
T ss_dssp TCC
T ss_pred CCC
Confidence 643
No 20
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.33 E-value=0.02 Score=47.62 Aligned_cols=140 Identities=23% Similarity=0.298 Sum_probs=88.4
Q ss_pred CcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcc--eeecchhhhhhhhhhccCC
Q 022739 3 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 3 i~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ--~TVNnQ~V~aTLMNiaDnP 80 (293)
...+.+++.++.+...|+..+.++.-+.+| +++..|+|||.++|+=.+.-..... .....+.++. |++.-|.-
T Consensus 71 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~-ll~~l~~~ 145 (257)
T 1lv7_A 71 VPFFTISGSDFVEMFVGVGASRVRDMFEQA----KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQ-MLVEMDGF 145 (257)
T ss_dssp CCEEEECSCSSTTSCCCCCHHHHHHHHHHH----HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHH-HHHHHHTC
T ss_pred CCEEEEeHHHHHHHhhhhhHHHHHHHHHHH----HHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHH-HHHHhhCc
Confidence 345678888888888898888777655544 4567899999999863332211000 0011123333 33332211
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCCCh-HHHHHHhhhCC
Q 022739 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFP 157 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~~~-~dv~~LVd~Fp 157 (293)
....++-||.|-|....|-..|.|.||.+..+- -|+.++|..|+....+.-.++. .+...+....|
T Consensus 146 -----------~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~ 214 (257)
T 1lv7_A 146 -----------EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTP 214 (257)
T ss_dssp -----------CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCT
T ss_pred -----------ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcC
Confidence 123567899999999888888999999876443 4888999998877766545442 23455555555
Q ss_pred C
Q 022739 158 G 158 (293)
Q Consensus 158 ~ 158 (293)
|
T Consensus 215 G 215 (257)
T 1lv7_A 215 G 215 (257)
T ss_dssp T
T ss_pred C
Confidence 5
No 21
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.26 E-value=0.0015 Score=56.65 Aligned_cols=127 Identities=23% Similarity=0.357 Sum_probs=82.6
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCC--cceeecchhhhhhhhhhccC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADN 79 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~--TQ~TVNnQ~V~aTLMNiaDn 79 (293)
+..-+.+++.+|-+.+.|+-.+.+|.-+..| +..+.|+|||.++|+=...-++. ....+..+ +...|++.-|.
T Consensus 74 ~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~-~~~~lL~~l~~ 148 (301)
T 3cf0_A 74 QANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADR-VINQILTEMDG 148 (301)
T ss_dssp TCEEEEECHHHHHHHHHTTCTTHHHHHHHHH----HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCH-HHHHHHHHHHS
T ss_pred CCCEEEEEhHHHHhhhcCchHHHHHHHHHHH----HhcCCeEEEEEChHHHhhccCCCcCCcchHHHH-HHHHHHHHhhc
Confidence 3445667777777777777777777766655 35678999999999733222110 00011122 22345555442
Q ss_pred CCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCC
Q 022739 80 PTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV 144 (293)
Q Consensus 80 Pt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~ 144 (293)
- ....+|.||.|-|....|=..|+|.||.++.+. -|+.++|..|++..++.-++
T Consensus 149 ~-----------~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~ 204 (301)
T 3cf0_A 149 M-----------STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV 204 (301)
T ss_dssp S-----------CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB
T ss_pred c-----------cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC
Confidence 1 123578999999999888777999999986433 48899999999888765443
No 22
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.19 E-value=0.0051 Score=51.20 Aligned_cols=126 Identities=20% Similarity=0.229 Sum_probs=77.6
Q ss_pred CcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCC-Cc-ce-eecchhhhhhhhhhccC
Q 022739 3 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGG-TT-QY-TVNNQMVNATLMNIADN 79 (293)
Q Consensus 3 i~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~-~T-Q~-TVNnQ~V~aTLMNiaDn 79 (293)
...+.+++.++.+...|+..+.+|.-+..| ++.+.++|||.|+|+=.+.-.. .+ .. ....+++ ..|.+.-+.
T Consensus 70 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~-~~ll~~l~~ 144 (268)
T 2r62_A 70 VPFFSMGGSSFIEMFVGLGASRVRDLFETA----KKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTL-NQLLAEMDG 144 (268)
T ss_dssp CCCCCCCSCTTTTSCSSSCSSSSSTTHHHH----HHSCSCEEEESCGGGTTC----------CCCSCSST-TTTTTTTTC
T ss_pred CCEEEechHHHHHhhcchHHHHHHHHHHHH----HhcCCeEEEEeChhhhcccccccccCCCchhHHHHH-HHHHHHhhC
Confidence 344667777888877787766665555444 3457799999999975443210 00 00 0011222 233333332
Q ss_pred CCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCC
Q 022739 80 PTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN 143 (293)
Q Consensus 80 Pt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg 143 (293)
+. ....+|-||.|.|....|-..|+|.||.+..+. .|+.++|..++...++.-.
T Consensus 145 ~~----------~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~ 200 (268)
T 2r62_A 145 FG----------SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVK 200 (268)
T ss_dssp SS----------CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSC
T ss_pred cc----------cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCC
Confidence 11 123467899999999888777999999876443 5899999999987776533
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.13 E-value=0.025 Score=47.77 Aligned_cols=142 Identities=15% Similarity=0.256 Sum_probs=91.7
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
+..-+.+++.++-+.+.|+..+.+|.-...| +..+.++|||.++|+-.+.-. .....+...+.+ .|++.-|.+.
T Consensus 79 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~-~~~~~~~~~~~~-~ll~~l~~~~ 152 (297)
T 3b9p_A 79 SATFLNISAASLTSKYVGDGEKLVRALFAVA----RHMQPSIIFIDEVDSLLSERS-SSEHEASRRLKT-EFLVEFDGLP 152 (297)
T ss_dssp TCEEEEEESTTTSSSSCSCHHHHHHHHHHHH----HHTCSEEEEEETGGGTSBCC------CCSHHHHH-HHHHHHHHCC
T ss_pred CCCeEEeeHHHHhhcccchHHHHHHHHHHHH----HHcCCcEEEeccHHHhccccc-cCcchHHHHHHH-HHHHHHhccc
Confidence 4456778999999999999888777655443 456789999999999887654 223334444443 3443333221
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccc--cccCcCCccchhhhhcccccCC--CChHHHHHHhhhCC
Q 022739 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDN--VADDDIVKLVDTFP 157 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeK--FYW~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp 157 (293)
.. ....+|-||.|.|+...|=..+.| |.+. ++=-|+.+++..|++.+++.-+ ++.+++..|...-.
T Consensus 153 ~~--------~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~ 222 (297)
T 3b9p_A 153 GN--------PDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITD 222 (297)
T ss_dssp --------------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTT
T ss_pred cc--------CCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 11 112457899999998877666666 6643 3345888899999888776544 56777888887765
Q ss_pred CC
Q 022739 158 GQ 159 (293)
Q Consensus 158 ~Q 159 (293)
+-
T Consensus 223 g~ 224 (297)
T 3b9p_A 223 GY 224 (297)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 24
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.63 E-value=0.019 Score=54.72 Aligned_cols=139 Identities=22% Similarity=0.307 Sum_probs=93.9
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
|...+.++++++-+...|+....+|..+.+| ++++.|+|||.++|+=.+.-.. ++-.+... +...|.++-+.-
T Consensus 263 ~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A----~~~~p~iLfLDEId~l~~~~~~-~~~~~~~~-~~~~LL~~ld~~- 335 (489)
T 3hu3_A 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPAIIFIDELDAIAPKREK-THGEVERR-IVSQLLTLMDGL- 335 (489)
T ss_dssp SSEEEEEEHHHHHTSCTTHHHHHHHHHHHHH----HHTCSEEEEEESHHHHCBCTTS-CCCHHHHH-HHHHHHHHHHHS-
T ss_pred CCCEEEEEchHhhhhhcchhHHHHHHHHHHH----HhcCCcEEEecchhhhcccccc-ccchHHHH-HHHHHHHHhhcc-
Confidence 4556778899999999999888777666655 5678899999999986665431 22222222 334444444410
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccc--cccCcCCccchhhhhcccccCCCCh-HHHHHHhhhCC
Q 022739 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFP 157 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeK--FYW~Ptred~i~iv~~if~~Dg~~~-~dv~~LVd~Fp 157 (293)
.....|-||.|-|....|-..|.|.||.++ ++=-|+.++|..|+...++.-.+.. .++..|.....
T Consensus 336 ----------~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~ 404 (489)
T 3hu3_A 336 ----------KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETH 404 (489)
T ss_dssp ----------CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCT
T ss_pred ----------ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHcc
Confidence 123457788899998888877888899876 3445999999999987776555443 24555555444
No 25
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.08 E-value=0.061 Score=51.55 Aligned_cols=143 Identities=20% Similarity=0.241 Sum_probs=85.9
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCc--ceeecchhhhhhhhhhccC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADN 79 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~T--Q~TVNnQ~V~aTLMNiaDn 79 (293)
|+..+.+|+.++-+...|+-++.+|.- .+..++++.|+|||.++|+=.+.-+..+ ......|.++. |.+.-|.
T Consensus 74 ~~~f~~is~~~~~~~~~g~~~~~~r~l----f~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~-LL~~ld~ 148 (476)
T 2ce7_A 74 NVPFFHISGSDFVELFVGVGAARVRDL----FAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ-LLVEMDG 148 (476)
T ss_dssp TCCEEEEEGGGTTTCCTTHHHHHHHHH----HHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHH-HHHHHHH
T ss_pred CCCeeeCCHHHHHHHHhcccHHHHHHH----HHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHH-HHHHHhc
Confidence 445677889999888888876655544 4444567899999999998544322100 00011123322 2222221
Q ss_pred CCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccc-c-CcCCccchhhhhcccccCCCCh-HHHHHHhhhC
Q 022739 80 PTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY-W-APTREDRIGVCKGIFRNDNVAD-DDIVKLVDTF 156 (293)
Q Consensus 80 Pt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFY-W-~Ptred~i~iv~~if~~Dg~~~-~dv~~LVd~F 156 (293)
+ .....|-||.|-|....|=..|+|.||.+.-+ - -|+.++|..|+....+.-.++. .++..|....
T Consensus 149 -----~------~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t 217 (476)
T 2ce7_A 149 -----F------DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRT 217 (476)
T ss_dssp -----S------CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC
T ss_pred -----c------CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhc
Confidence 0 01236789999999877655588999988432 2 4888888888866555444432 2355566666
Q ss_pred CCCc
Q 022739 157 PGQS 160 (293)
Q Consensus 157 p~Q~ 160 (293)
||-+
T Consensus 218 ~G~s 221 (476)
T 2ce7_A 218 PGFV 221 (476)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 6554
No 26
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.83 E-value=0.093 Score=45.58 Aligned_cols=122 Identities=25% Similarity=0.429 Sum_probs=75.9
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
+..-|.+++.++.+.+.|+-.+.|+.=+.. .+....|++||.++|+..+.-+.. ....-..+++. +.+
T Consensus 69 ~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~----a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~-~l~------ 136 (274)
T 2x8a_A 69 GLNFISVKGPELLNMYVGESERAVRQVFQR----AKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQ-LLT------ 136 (274)
T ss_dssp TCEEEEEETTTTCSSTTHHHHHHHHHHHHH----HHHTCSEEEEEETCTTTCC----------CTTHHHH-HHH------
T ss_pred CCCEEEEEcHHHHhhhhhHHHHHHHHHHHH----HHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHH-HHH------
Confidence 344577888888888777755555544433 334567999999999977653311 11011111111 111
Q ss_pred ccCCCCcCCC-CCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhccccc
Q 022739 82 CVQLPGMYNK-EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN 141 (293)
Q Consensus 82 ~Vqlpg~y~~-~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~ 141 (293)
.++. +....+=+|.+-|+..-|=.+|.|-||+|+... -|+.++|..|++.+.+.
T Consensus 137 ------~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~ 193 (274)
T 2x8a_A 137 ------EMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKN 193 (274)
T ss_dssp ------HHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTT
T ss_pred ------hhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 1111 123455677889999888788999999998766 48899999999877643
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.62 E-value=0.25 Score=49.73 Aligned_cols=139 Identities=22% Similarity=0.307 Sum_probs=92.1
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022739 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
+...+.+++.++-+...|+-.+.++.-+.+|. +...|+|||.++|+.....+ ..+-.+... +...|.++-+.-
T Consensus 263 ~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~-~~~~~~~~~-~~~~Ll~ll~g~- 335 (806)
T 1ypw_A 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPAIIFIDELDAIAPKRE-KTHGEVERR-IVSQLLTLMDGL- 335 (806)
T ss_dssp TCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHH----HHCSEEEEEESGGGTSCTTS-CCCSHHHHH-HHHHHHHHHHSS-
T ss_pred CCcEEEEEchHhhhhhhhhHHHHHHHHHHHHH----hcCCcEEEeccHHHhhhccc-cccchHHHH-HHHHHHHHhhhh-
Confidence 34457778888888888988888877766653 45679999999999988765 233333322 334455554421
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccc--cccCcCCccchhhhhcccccCCCCh-HHHHHHhhhCC
Q 022739 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFP 157 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeK--FYW~Ptred~i~iv~~if~~Dg~~~-~dv~~LVd~Fp 157 (293)
.....|-+|.|-|+...|=.-|.|-||.++ .+..|+.++|..|+..+.+.-.+.. .++..+.....
T Consensus 336 ----------~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~ 404 (806)
T 1ypw_A 336 ----------KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETH 404 (806)
T ss_dssp ----------CTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCS
T ss_pred ----------cccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhc
Confidence 122567888999998887655667799876 4667999999999987665433322 23444444433
No 28
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.57 E-value=0.11 Score=45.80 Aligned_cols=177 Identities=18% Similarity=0.290 Sum_probs=85.8
Q ss_pred CCcceeecccccC-CCCCCC-chHHHHHHHHHHHHHHhcccceEEEeecccccCCcCC-CCcceeecchhhhhhhhhhcc
Q 022739 2 GINPIMMSAGELE-SGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIAD 78 (293)
Q Consensus 2 Gi~pI~mSAGELE-s~~AGe-ParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~-~~TQ~TVNnQ~V~aTLMNiaD 78 (293)
|...+.+++..+. ++..|+ ..+.++.-...+...+.+..-++|||.++|.=...-+ ......+.+.-+..+|..+-+
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le 176 (376)
T 1um8_A 97 DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVE 176 (376)
T ss_dssp TCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHH
T ss_pred CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhh
Confidence 3344556666654 444454 3444443333332233445678999999997544321 112223333446777888887
Q ss_pred CCCccCCC---CcCC------CCCCCCCCEEEecCCccccccccccCCCccc----------------------------
Q 022739 79 NPTCVQLP---GMYN------KEENPRVPIIVTGNDFSTLYAPLIRDGRMEK---------------------------- 121 (293)
Q Consensus 79 nPt~Vqlp---g~y~------~~~~~RVPIIVTGNDfStLYAPLiRDGRMeK---------------------------- 121 (293)
.+. |++| +... .-.+..+.+|.||| +..|-..|.| |+++
T Consensus 177 ~~~-~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~--R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 252 (376)
T 1um8_A 177 GSL-VNIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKK--RTTQNVLGFTQEKMSKKEQEAILHLVQTHDLV 252 (376)
T ss_dssp CCE-EC---------------CEECTTCEEEEEEC-CTTHHHHTTT--SCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHH
T ss_pred ccc-eecccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHH--HhcccccCCCchhhhccchhHHHhhcCHHHHh
Confidence 653 2222 2111 11235567888888 6666555554 4432
Q ss_pred -cccCcCCccchhhhhcccccCCCChHHHHHHhhhCCCCcchhHhhhh-----hhhhhHHHHHHHhhhcc
Q 022739 122 -FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR-----ARVYDDEVRKWISGVGV 185 (293)
Q Consensus 122 -FYW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q~iDFFGALR-----aR~YDd~Vr~wi~~vG~ 185 (293)
+...|.--.|++. ++.-..++.+|+..++..+-+.-+..|...- .-.+++++.+||.+.+.
T Consensus 253 ~~~~~p~l~~R~~~---~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 319 (376)
T 1um8_A 253 TYGLIPELIGRLPV---LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLAL 319 (376)
T ss_dssp HTTCCHHHHTTCCE---EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH
T ss_pred hcCCChHHhcCCCc---eeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhc
Confidence 2223333344432 3444568889999988765444444333211 22367777777776543
No 29
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.98 E-value=0.36 Score=40.50 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=70.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCC
Q 022739 16 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 95 (293)
Q Consensus 16 ~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~ 95 (293)
...|.+..-.....++..+...+++.++|||.|+|.=.|.-..+. ...+.+. .+|..+-+.. .....
T Consensus 100 ~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~l-~~L~~~~~~~----------~~~~~ 166 (272)
T 1d2n_A 100 KMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP--RFSNLVL-QALLVLLKKA----------PPQGR 166 (272)
T ss_dssp GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT--BCCHHHH-HHHHHHTTCC----------CSTTC
T ss_pred HhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh--hHHHHHH-HHHHHHhcCc----------cCCCC
Confidence 345555433333444444445568899999999996433321111 1122222 2233332211 11224
Q ss_pred CCCEEEecCCccccccccccCCCccccccCcCCccchhhhhcccccCCCChHHHHHHhhhCCC
Q 022739 96 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 158 (293)
Q Consensus 96 RVPIIVTGNDfStLYAPLiRDGRMeKFYW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~ 158 (293)
++-||.|-|....|- ++..-+|....+.=|.-.+|..+..-+-+...++.+++..|+....+
T Consensus 167 ~~~ii~ttn~~~~l~-~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 167 KLLIIGTTSRKDVLQ-EMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKG 228 (272)
T ss_dssp EEEEEEEESCHHHHH-HTTCTTTSSEEEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTT
T ss_pred CEEEEEecCChhhcc-hhhhhcccceEEcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHhcC
Confidence 566888999876553 32223576666666765555444433334557788888888877766
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.75 E-value=0.13 Score=43.22 Aligned_cols=114 Identities=13% Similarity=0.187 Sum_probs=68.7
Q ss_pred cceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCcc
Q 022739 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV 83 (293)
Q Consensus 4 ~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~V 83 (293)
..+.+++.+|.+..-|+..+.++....+| +-++|||.|+|.=.+.-. ... .++-+...|.++-+++
T Consensus 101 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-------~~~vl~iDEid~l~~~~~-~~~---~~~~~~~~Ll~~l~~~--- 166 (309)
T 3syl_A 101 HLVSVTRDDLVGQYIGHTAPKTKEVLKRA-------MGGVLFIDEAYYLYRPDN-ERD---YGQEAIEILLQVMENN--- 166 (309)
T ss_dssp CEEEECGGGTCCSSTTCHHHHHHHHHHHH-------TTSEEEEETGGGSCCCC----C---CTHHHHHHHHHHHHHC---
T ss_pred cEEEEcHHHhhhhcccccHHHHHHHHHhc-------CCCEEEEEChhhhccCCC-ccc---ccHHHHHHHHHHHhcC---
Confidence 45677889999999998877666555444 347999999995332211 111 1344556677777654
Q ss_pred CCCCcCCCCCCCCCCEEEecCCcc-ccc---cccccCCCc-cccccC-cCCccchhhhhcccccC
Q 022739 84 QLPGMYNKEENPRVPIIVTGNDFS-TLY---APLIRDGRM-EKFYWA-PTREDRIGVCKGIFRND 142 (293)
Q Consensus 84 qlpg~y~~~~~~RVPIIVTGNDfS-tLY---APLiRDGRM-eKFYW~-Ptred~i~iv~~if~~D 142 (293)
..++.||.|+|.-. ..| .|-+++ |+ ..++.. |+.+++..|+..+++.-
T Consensus 167 ----------~~~~~~i~~~~~~~~~~~~~~~~~l~~-R~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 167 ----------RDDLVVILAGYADRMENFFQSNPGFRS-RIAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp ----------TTTCEEEEEECHHHHHHHHHHSTTHHH-HEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred ----------CCCEEEEEeCChHHHHHHHhhCHHHHH-hCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 25678999997432 122 143333 55 333333 66677777776666543
No 31
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.98 E-value=0.18 Score=47.44 Aligned_cols=95 Identities=17% Similarity=0.258 Sum_probs=62.6
Q ss_pred cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCcc-ccccccccC
Q 022739 38 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRD 116 (293)
Q Consensus 38 ~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfS-tLYAPLiRD 116 (293)
+++-++|||.++|.=.+ .. |-....|.++.+. .++|||+++|+.. ....||.|
T Consensus 146 ~~~~~vliIDEid~l~~----~~------~~~l~~L~~~l~~---------------~~~~iIli~~~~~~~~l~~l~~- 199 (516)
T 1sxj_A 146 NGKHFVIIMDEVDGMSG----GD------RGGVGQLAQFCRK---------------TSTPLILICNERNLPKMRPFDR- 199 (516)
T ss_dssp STTSEEEEECSGGGCCT----TS------TTHHHHHHHHHHH---------------CSSCEEEEESCTTSSTTGGGTT-
T ss_pred cCCCeEEEEECCCccch----hh------HHHHHHHHHHHHh---------------cCCCEEEEEcCCCCccchhhHh-
Confidence 57889999999985322 11 2223456666553 3679999999864 23345433
Q ss_pred CCccccccC-cCCccchhhhhcccccCC--CChHHHHHHhhhCCCC
Q 022739 117 GRMEKFYWA-PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQ 159 (293)
Q Consensus 117 GRMeKFYW~-Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp~Q 159 (293)
|-..+... |+.+++..++..+....+ ++.+.+..|+...+|-
T Consensus 200 -r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~Gd 244 (516)
T 1sxj_A 200 -VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGD 244 (516)
T ss_dssp -TSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTC
T ss_pred -ceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Confidence 33344433 788888888888776544 6788889999888773
No 32
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=81.38 E-value=0.83 Score=34.93 Aligned_cols=95 Identities=16% Similarity=0.210 Sum_probs=59.1
Q ss_pred cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCC
Q 022739 38 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 117 (293)
Q Consensus 38 ~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDG 117 (293)
.++-++|+|.|+|.=.. . ....|..+.+++ ...+.+|+|+|....+..+|.+
T Consensus 100 ~~~~~vliiDe~~~l~~----~---------~~~~l~~~l~~~-------------~~~~~~i~~~~~~~~~~~~l~~-- 151 (226)
T 2chg_A 100 GAPFKIIFLDEADALTA----D---------AQAALRRTMEMY-------------SKSCRFILSCNYVSRIIEPIQS-- 151 (226)
T ss_dssp TCSCEEEEEETGGGSCH----H---------HHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHT--
T ss_pred ccCceEEEEeChhhcCH----H---------HHHHHHHHHHhc-------------CCCCeEEEEeCChhhcCHHHHH--
Confidence 47889999999876321 1 122344444443 2357899999988877766665
Q ss_pred CccccccC-cCCccchhhhhcccccCC--CChHHHHHHhhhCCCCc
Q 022739 118 RMEKFYWA-PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQS 160 (293)
Q Consensus 118 RMeKFYW~-Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp~Q~ 160 (293)
|...+.-. |+.++...++..+++..| ++.+.+..|+...+|.+
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~ 197 (226)
T 2chg_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDF 197 (226)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCH
T ss_pred hCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 33444443 567777777776665443 45666777776665543
No 33
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=79.98 E-value=2 Score=32.95 Aligned_cols=95 Identities=14% Similarity=0.229 Sum_probs=57.3
Q ss_pred cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCC
Q 022739 38 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 117 (293)
Q Consensus 38 ~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDG 117 (293)
.++-.+|+|.|+|. +... ....|..+-+++ ...+.||+|+|+...+...|.+
T Consensus 124 ~~~~~vlviDe~~~----l~~~---------~~~~l~~~l~~~-------------~~~~~~i~~t~~~~~~~~~l~~-- 175 (250)
T 1njg_A 124 RGRFKVYLIDEVHM----LSRH---------SFNALLKTLEEP-------------PEHVKFLLATTDPQKLPVTILS-- 175 (250)
T ss_dssp SSSSEEEEEETGGG----SCHH---------HHHHHHHHHHSC-------------CTTEEEEEEESCGGGSCHHHHT--
T ss_pred cCCceEEEEECccc----ccHH---------HHHHHHHHHhcC-------------CCceEEEEEeCChHhCCHHHHH--
Confidence 56778999999875 2211 223455554443 2467899999998877665554
Q ss_pred CccccccC-cCCccchhhhhcccccCC--CChHHHHHHhhhCCCCc
Q 022739 118 RMEKFYWA-PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQS 160 (293)
Q Consensus 118 RMeKFYW~-Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp~Q~ 160 (293)
|...+.-. |+.++...++...++..+ ++.+.+..|+..-+|-+
T Consensus 176 r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~ 221 (250)
T 1njg_A 176 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 221 (250)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCH
T ss_pred HhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCH
Confidence 33344433 456667777766665443 34556666666655543
No 34
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.80 E-value=1.4 Score=36.72 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=74.1
Q ss_pred cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCC
Q 022739 38 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 117 (293)
Q Consensus 38 ~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDG 117 (293)
.|+-++++|.|+|. +.... ...|..+.++| .+.+.+|+|.|+.+.+..+|...+
T Consensus 105 ~~~~~viiiDe~~~----l~~~~---------~~~L~~~le~~-------------~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 105 PGKHKIVILDEADS----MTAGA---------QQALRRTMELY-------------SNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp TTCCEEEEEESGGG----SCHHH---------HHTTHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHTTS
T ss_pred CCCceEEEEECccc----CCHHH---------HHHHHHHHhcc-------------CCCceEEEEeCChhhchhHHHhhc
Confidence 56688999999764 32111 12244444443 245789999999999988877655
Q ss_pred Ccccccc-CcCCccchhhhhcccccCC--CChHHHHHHhhhCCCCcchhHhhhhhh------hhhHHHHHHHhhh
Q 022739 118 RMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSIDFFGALRAR------VYDDEVRKWISGV 183 (293)
Q Consensus 118 RMeKFYW-~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp~Q~iDFFGALRaR------~YDd~Vr~wi~~v 183 (293)
. .+.. .|+.++...++..+++..| ++.+.+..|+....|-+-.-...|..- +--+.|.+++...
T Consensus 159 ~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~ 231 (323)
T 1sxj_B 159 A--ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSP 231 (323)
T ss_dssp E--EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSBCHHHHHHHHTSC
T ss_pred e--EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHCCC
Confidence 4 4433 4788899999988876655 457888888888777653333333222 3335566655443
No 35
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=79.65 E-value=5.3 Score=38.48 Aligned_cols=141 Identities=23% Similarity=0.324 Sum_probs=79.2
Q ss_pred CcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCC---cceeecchhhhhhhhhhccC
Q 022739 3 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGT---TQYTVNNQMVNATLMNIADN 79 (293)
Q Consensus 3 i~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~---TQ~TVNnQ~V~aTLMNiaDn 79 (293)
..-|.+|+.++.+...|+-.+.+|. ..+..++...|+|||.+||+=.+..+.. .+- ...|.++. |++.-|
T Consensus 90 ~~~i~i~g~~~~~~~~g~~~~~v~~----lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~-e~~~~l~~-LL~~Ld- 162 (499)
T 2dhr_A 90 VPFITASGSDFVEMFVGVGAARVRD----LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGND-EREQTLNQ-LLVEMD- 162 (499)
T ss_dssp CCEEEEEGGGGTSSCTTHHHHHHHH----HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSH-HHHHHHHH-HHHHGG-
T ss_pred CCEEEEehhHHHHhhhhhHHHHHHH----HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcH-HHHHHHHH-HHHHhc-
Confidence 3456788888887777765544432 2222223456999999999843332210 000 01122322 222212
Q ss_pred CCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCCC-hHHHHHHhhhC
Q 022739 80 PTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA-DDDIVKLVDTF 156 (293)
Q Consensus 80 Pt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~~-~~dv~~LVd~F 156 (293)
|. +....+-+|.|-|....|=.+|.|-||.+..+. -|+.++|..|+....+.-.++ ..++..|....
T Consensus 163 -------g~---~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t 232 (499)
T 2dhr_A 163 -------GF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRT 232 (499)
T ss_dssp -------GC---CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTS
T ss_pred -------cc---ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhc
Confidence 10 122345677788988888888999999886432 388889999887655433333 22344444444
Q ss_pred CCCc
Q 022739 157 PGQS 160 (293)
Q Consensus 157 p~Q~ 160 (293)
||-+
T Consensus 233 ~G~~ 236 (499)
T 2dhr_A 233 PGFV 236 (499)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 4433
No 36
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=78.38 E-value=1.7 Score=37.01 Aligned_cols=111 Identities=21% Similarity=0.339 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHh-cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEE
Q 022739 22 AKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 100 (293)
Q Consensus 22 arLIR~RYReAae~ik-~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPII 100 (293)
...||..-.++++... .|+-.+|||.|+|.=.| .. ....|..+-++|. ..++||
T Consensus 86 ~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~---~~---------~~~~L~~~le~~~-------------~~~~iI 140 (324)
T 3u61_B 86 IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL---AE---------SQRHLRSFMEAYS-------------SNCSII 140 (324)
T ss_dssp HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG---HH---------HHHHHHHHHHHHG-------------GGCEEE
T ss_pred HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc---HH---------HHHHHHHHHHhCC-------------CCcEEE
Confidence 5567766666666555 77899999999974221 11 1223444444331 467999
Q ss_pred EecCCccccccccccCCCccccccC-cCCccchh-------hhhcccccCCCC--h-HHHHHHhhhCCCC
Q 022739 101 VTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIG-------VCKGIFRNDNVA--D-DDIVKLVDTFPGQ 159 (293)
Q Consensus 101 VTGNDfStLYAPLiRDGRMeKFYW~-Ptred~i~-------iv~~if~~Dg~~--~-~dv~~LVd~Fp~Q 159 (293)
.|.|+...+..+|.+ |...|... |+.+++.. .+..+.+..|+. + +.+..|+...++.
T Consensus 141 ~~~n~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd 208 (324)
T 3u61_B 141 ITANNIDGIIKPLQS--RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD 208 (324)
T ss_dssp EEESSGGGSCTTHHH--HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC
T ss_pred EEeCCccccCHHHHh--hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC
Confidence 999999999988887 45567774 66677543 344444555544 4 6677777776654
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=78.27 E-value=3.2 Score=34.37 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=82.0
Q ss_pred CcceeecccccCC-CCCC-CchHHHHHHHHHHHHHHh-cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccC
Q 022739 3 INPIMMSAGELES-GNAG-EPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 79 (293)
Q Consensus 3 i~pI~mSAGELEs-~~AG-eParLIR~RYReAae~ik-~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDn 79 (293)
...+.+++.++-+ +..| +....++.-...+...++ .++-++|||.++|.=..... ...+.+..+-+...|.++-++
T Consensus 76 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~-~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 76 APFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE-YSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS-CCSSHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccc-ccccchhHHHHHHHHHHHhcC
Confidence 3445667776654 3444 244556654443322333 34578999999997544432 223444445556677777775
Q ss_pred CCccCCCCcCCCCCCCCCCEEEecCC----ccccccccccCCCccccccCcCCccchhhhhcccccCCCChHHHHHHhhh
Q 022739 80 PTCVQLPGMYNKEENPRVPIIVTGND----FSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDT 155 (293)
Q Consensus 80 Pt~Vqlpg~y~~~~~~RVPIIVTGND----fStLYAPLiRDGRMeKFYW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~ 155 (293)
.+...-.+ ..+..++-+|.|+|- ...+-.+|. .|.+ -.+.=..++.+++.+++..
T Consensus 155 ~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~l~--~R~~----------------~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHG---MVKTDHILFIASGAFQVARPSDLIPELQ--GRLP----------------IRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTE---EEECTTCEEEEEECCSSSCGGGSCHHHH--HTCC----------------EEEECCCCCHHHHHHHHHS
T ss_pred CeEecccc---cccCCcEEEEEcCCcccCCcccCCHHHH--hhCC----------------ceEEcCCcCHHHHHHHHHh
Confidence 43221111 223457788888752 222222222 2322 1233345667777777775
Q ss_pred CCCCcchhHhhh-hh----hhhhHHHHHHHhhhc
Q 022739 156 FPGQSIDFFGAL-RA----RVYDDEVRKWISGVG 184 (293)
Q Consensus 156 Fp~Q~iDFFGAL-Ra----R~YDd~Vr~wi~~vG 184 (293)
.-..-+..|..+ +. -.+++++.++|.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 247 (310)
T 1ofh_A 214 PHASLTEQYKALMATEGVNIAFTTDAVKKIAEAA 247 (310)
T ss_dssp STTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHh
Confidence 443333333221 11 146777777777654
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=76.55 E-value=0.74 Score=34.37 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=44.6
Q ss_pred HHHHHHHHHHh-cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCC
Q 022739 27 QRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 105 (293)
Q Consensus 27 ~RYReAae~ik-~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGND 105 (293)
...++..+.+. .++-++|+|.|+|.=.+.-+...+.. +...|..+.++ .++.+|.|+|.
T Consensus 101 ~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~-----~~~~l~~~~~~---------------~~~~~i~~~~~ 160 (195)
T 1jbk_A 101 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD-----AGNMLKPALAR---------------GELHCVGATTL 160 (195)
T ss_dssp HHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC-----CHHHHHHHHHT---------------TSCCEEEEECH
T ss_pred HHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH-----HHHHHHHhhcc---------------CCeEEEEeCCH
Confidence 34444444443 77889999999987433211111111 12222222221 36789999997
Q ss_pred cc-----ccccccccCCCccccccC-cCCccchhhh
Q 022739 106 FS-----TLYAPLIRDGRMEKFYWA-PTREDRIGVC 135 (293)
Q Consensus 106 fS-----tLYAPLiRDGRMeKFYW~-Ptred~i~iv 135 (293)
.. .+-.+|.+ |.+.++-. |+.+++..|+
T Consensus 161 ~~~~~~~~~~~~l~~--r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 161 DEYRQYIEKDAALER--RFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHTTTCHHHHT--TEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHhcCHHHHH--HhceeecCCCCHHHHHHHh
Confidence 65 33344544 66554443 5555555443
No 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=75.14 E-value=3.4 Score=39.47 Aligned_cols=106 Identities=19% Similarity=0.369 Sum_probs=69.7
Q ss_pred eEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCC--CCCCCCEEEecCCccccccccccCCCc
Q 022739 42 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE--ENPRVPIIVTGNDFSTLYAPLIRDGRM 119 (293)
Q Consensus 42 ~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~--~~~RVPIIVTGNDfStLYAPLiRDGRM 119 (293)
.+|||..+|.=...+.+. +...|..+-|...+-.+-..|... +...|-||.|.|...+|=.||.+ ||
T Consensus 177 ~vl~lDEid~l~~~~~~~---------~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~ 245 (543)
T 3m6a_A 177 PVFLLDEIDKMSSDFRGD---------PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RM 245 (543)
T ss_dssp EEEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HE
T ss_pred CEEEEhhhhhhhhhhccC---------HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hc
Confidence 399999998654433222 234456666654443333334333 34688899999999999888887 99
Q ss_pred cccccC-cCCccchhhhhcccc-----cC-------CCChHHHHHHhhhCCC
Q 022739 120 EKFYWA-PTREDRIGVCKGIFR-----ND-------NVADDDIVKLVDTFPG 158 (293)
Q Consensus 120 eKFYW~-Ptred~i~iv~~if~-----~D-------g~~~~dv~~LVd~Fp~ 158 (293)
+.++.. |+.++++.|+...|. .. .++.+.+..|++.|..
T Consensus 246 ~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~ 297 (543)
T 3m6a_A 246 EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTR 297 (543)
T ss_dssp EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCC
T ss_pred ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCCh
Confidence 877665 788899999988762 12 3467888888987775
No 40
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=74.59 E-value=3.5 Score=35.16 Aligned_cols=97 Identities=10% Similarity=0.127 Sum_probs=58.7
Q ss_pred cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCc---cccccccc
Q 022739 38 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---STLYAPLI 114 (293)
Q Consensus 38 ~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDf---StLYAPLi 114 (293)
.++.++|+|.|+|.- ++-+...|..+..+... ....+++||+++|+. ..+-.++.
T Consensus 123 ~~~~~vlilDE~~~l-------------~~~~~~~L~~~~~~~~~---------~~~~~~~iI~~~~~~~~~~~l~~~~~ 180 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNL-------------APDILSTFIRLGQEADK---------LGAFRIALVIVGHNDAVLNNLDPSTR 180 (389)
T ss_dssp TTCCEEEEEETGGGS-------------CHHHHHHHHHHTTCHHH---------HSSCCEEEEEEESSTHHHHTSCHHHH
T ss_pred cCCeEEEEEECcccc-------------chHHHHHHHHHHHhCCC---------CCcCCEEEEEEECCchHHHHhCHHhh
Confidence 688999999999875 12334455555543311 012478999999987 33323332
Q ss_pred cCCCccccccCc-CCccchhhhhccccc----CCCChHHHHHHhhhC
Q 022739 115 RDGRMEKFYWAP-TREDRIGVCKGIFRN----DNVADDDIVKLVDTF 156 (293)
Q Consensus 115 RDGRMeKFYW~P-tred~i~iv~~if~~----Dg~~~~dv~~LVd~F 156 (293)
+.-....+...| +.++...++...+.. ..++.+.+..|+...
T Consensus 181 ~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 181 GIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 227 (389)
T ss_dssp HHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHH
T ss_pred hcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 211111355554 567777787665543 567888888888777
No 41
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=74.40 E-value=2.7 Score=34.84 Aligned_cols=95 Identities=16% Similarity=0.210 Sum_probs=65.8
Q ss_pred cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCC
Q 022739 38 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 117 (293)
Q Consensus 38 ~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDG 117 (293)
.++-.+|+|.|+|. +... ....|..+.++| .+.+.+|+|.|....+..+|.+..
T Consensus 100 ~~~~~vliiDe~~~----l~~~---------~~~~L~~~le~~-------------~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 100 GAPFKIIFLDEADA----LTAD---------AQAALRRTMEMY-------------SKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp SCCCEEEEEETGGG----SCHH---------HHHTTGGGTSSS-------------SSSEEEEEEESCGGGSCHHHHTTC
T ss_pred CCCceEEEEeCCCc----CCHH---------HHHHHHHHHHhc-------------CCCCeEEEEeCChhhcchHHHhhC
Confidence 37788999988764 3211 112244444443 356789999999998888887655
Q ss_pred Ccccccc-CcCCccchhhhhcccccCCC--ChHHHHHHhhhCCCCc
Q 022739 118 RMEKFYW-APTREDRIGVCKGIFRNDNV--ADDDIVKLVDTFPGQS 160 (293)
Q Consensus 118 RMeKFYW-~Ptred~i~iv~~if~~Dg~--~~~dv~~LVd~Fp~Q~ 160 (293)
. .+.. .|+.+++..++..+++..|+ +.+.+..|+...+|-.
T Consensus 154 ~--~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~ 197 (319)
T 2chq_A 154 A--VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDF 197 (319)
T ss_dssp E--EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCH
T ss_pred e--EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 4 4444 46888899999888887765 7888888988877754
No 42
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=72.20 E-value=1.2 Score=39.15 Aligned_cols=178 Identities=15% Similarity=0.227 Sum_probs=87.1
Q ss_pred CCcceeecccccCC-CCCCCc-hHHHHHHHHHHHHHHhcccceEEEeecccc-cCCcCCCCcceeecchhhhhhhhhhcc
Q 022739 2 GINPIMMSAGELES-GNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIAD 78 (293)
Q Consensus 2 Gi~pI~mSAGELEs-~~AGeP-arLIR~RYReAae~ik~GkM~~L~INDLDA-G~Grf~~~TQ~TVNnQ~V~aTLMNiaD 78 (293)
|..-+.++++++-+ ++-|+- .+.++.-.+.+.-.+++..-|+|||.++|. ...|-+......+.++-+..+|+.+-|
T Consensus 76 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le 155 (363)
T 3hws_A 76 DVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE 155 (363)
T ss_dssp TCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH
T ss_pred CCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhc
Confidence 33445566666543 244442 444544444433223445568999999994 333333334445555668888888888
Q ss_pred CCCccCCCCcCCC---------CCCCCCCEEEecCC--ccccccc---------c-------------------ccCCCc
Q 022739 79 NPTCVQLPGMYNK---------EENPRVPIIVTGND--FSTLYAP---------L-------------------IRDGRM 119 (293)
Q Consensus 79 nPt~Vqlpg~y~~---------~~~~RVPIIVTGND--fStLYAP---------L-------------------iRDGRM 119 (293)
=+.+.+|..... -....+.+|+|||- ...+-.- . ++.+-.
T Consensus 156 -g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l 234 (363)
T 3hws_A 156 -GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 234 (363)
T ss_dssp -CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHH
T ss_pred -CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHH
Confidence 455555432211 12356788999983 2211000 0 000001
Q ss_pred cccccCcCCccchhhhhcccccCCCChHHHHHHhhhCCCCcchhHhhhh-----hhhhhHHHHHHHhhh
Q 022739 120 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR-----ARVYDDEVRKWISGV 183 (293)
Q Consensus 120 eKFYW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q~iDFFGALR-----aR~YDd~Vr~wi~~v 183 (293)
.+|.+.|..-.|+. .++.-..+++++++.++..+-+.-+..|...- .-.+++++.+||.+.
T Consensus 235 ~~~~~~~~l~~R~~---~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~ 300 (363)
T 3hws_A 235 IKFGLIPEFIGRLP---VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKK 300 (363)
T ss_dssp HHHTCCHHHHTTCC---EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred HHcCCCHHHhcccC---eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHh
Confidence 12223343333333 23333457788888888765544455444321 124678888888764
No 43
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=71.28 E-value=2.7 Score=34.95 Aligned_cols=96 Identities=15% Similarity=0.186 Sum_probs=63.6
Q ss_pred ccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCC
Q 022739 39 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 118 (293)
Q Consensus 39 GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGR 118 (293)
|+-.+|+|.|+|. +...+ ...|..+.++| ...+.+|+|+|..+.+..+|.....
T Consensus 109 ~~~~vliiDe~~~----l~~~~---------~~~L~~~le~~-------------~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 109 ASFKIIFLDEADA----LTQDA---------QQALRRTMEMF-------------SSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp CSCEEEEEETGGG----SCHHH---------HHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred CCCeEEEEeCCCc----CCHHH---------HHHHHHHHHhc-------------CCCCeEEEEeCCccccCHHHHhhCc
Confidence 7788999999764 32111 12344444443 2356899999999888877765433
Q ss_pred ccccc-cCcCCccchhhhhcccccCC--CChHHHHHHhhhCCCCcch
Q 022739 119 MEKFY-WAPTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSID 162 (293)
Q Consensus 119 MeKFY-W~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp~Q~iD 162 (293)
.+. ..|+.++...++..+++..| ++.+.+..|+...+|-+-.
T Consensus 163 --~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~ 207 (327)
T 1iqp_A 163 --IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRR 207 (327)
T ss_dssp --EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHH
T ss_pred --EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHH
Confidence 333 34677888888888877666 5677888888877764433
No 44
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=67.62 E-value=4.1 Score=40.73 Aligned_cols=136 Identities=21% Similarity=0.354 Sum_probs=67.6
Q ss_pred CcceeecccccCC--CCCCCchHHHHHHHHHHHHHHh-cccceEEEeecccc--cCCcCCCCcceeecchhhhhhhhhhc
Q 022739 3 INPIMMSAGELES--GNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDA--GAGRMGGTTQYTVNNQMVNATLMNIA 77 (293)
Q Consensus 3 i~pI~mSAGELEs--~~AGeParLIR~RYReAae~ik-~GkM~~L~INDLDA--G~Grf~~~TQ~TVNnQ~V~aTLMNia 77 (293)
...+.++.+.+.+ ..-|+ ...|++...+.++ .++-++|||.|+|. |.|...+ + ..+-| .|-.+.
T Consensus 227 ~~~~~l~~~~l~~g~~~~g~----~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-~-~~~~~-----~L~~~l 295 (854)
T 1qvr_A 227 KRIVSLQMGSLLAGAKYRGE----FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-A-VDAGN-----MLKPAL 295 (854)
T ss_dssp CEEEEECC-----------C----HHHHHHHHHHHHHTTCSSEEEEECCC--------------------------HHHH
T ss_pred CeEEEeehHHhhccCccchH----HHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-h-HHHHH-----HHHHHH
Confidence 3445566666642 23343 3456666666666 45789999999996 4443321 1 11111 111111
Q ss_pred cCCCccCCCCcCCCCCCCCCCEEEecCCcc----ccccccccCCCccccccC-cCCccchhhhhcccc------cCCCCh
Q 022739 78 DNPTCVQLPGMYNKEENPRVPIIVTGNDFS----TLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFR------NDNVAD 146 (293)
Q Consensus 78 DnPt~Vqlpg~y~~~~~~RVPIIVTGNDfS----tLYAPLiRDGRMeKFYW~-Ptred~i~iv~~if~------~Dg~~~ 146 (293)
. ...+.+|.++|.-. .+-..|.| |.++++-. |+.++++.|+.++.+ .-.++.
T Consensus 296 ~---------------~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~ 358 (854)
T 1qvr_A 296 A---------------RGELRLIGATTLDEYREIEKDPALER--RFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISD 358 (854)
T ss_dssp H---------------TTCCCEEEEECHHHHHHHTTCTTTCS--CCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECH
T ss_pred h---------------CCCeEEEEecCchHHhhhccCHHHHh--CCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCH
Confidence 1 13577888887432 12344665 77776664 789999999987654 223456
Q ss_pred HHHHHHhh---hC------CCCcchhHhh
Q 022739 147 DDIVKLVD---TF------PGQSIDFFGA 166 (293)
Q Consensus 147 ~dv~~LVd---~F------p~Q~iDFFGA 166 (293)
+.+..++. .| |...+|+.-.
T Consensus 359 ~al~~~~~ls~r~i~~~~lp~kai~llde 387 (854)
T 1qvr_A 359 SAIIAAATLSHRYITERRLPDKAIDLIDE 387 (854)
T ss_dssp HHHHHHHHHHHHHCCSSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccChHHHHHHHHH
Confidence 65655554 22 5566776543
No 45
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=61.92 E-value=13 Score=30.58 Aligned_cols=139 Identities=23% Similarity=0.293 Sum_probs=72.5
Q ss_pred eeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCc--ceeecchhhhhhhhhhccCCCcc
Q 022739 6 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCV 83 (293)
Q Consensus 6 I~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~T--Q~TVNnQ~V~aTLMNiaDnPt~V 83 (293)
|.+++.++.+...|+-.+. .+...+..++...++++|.++|+=..+.+... ......+.++ .|++.-+
T Consensus 78 i~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~-~ll~~l~----- 147 (254)
T 1ixz_A 78 ITASGSDFVEMFVGVGAAR----VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-QLLVEMD----- 147 (254)
T ss_dssp EEEEHHHHHHSCTTHHHHH----HHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHH-HHHHHHH-----
T ss_pred EEeeHHHHHHHHhhHHHHH----HHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHH-HHHHHHh-----
Confidence 4444444444444443333 33333333445678999999986433221100 0001112222 2333222
Q ss_pred CCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCCC-hHHHHHHhhhCCCCc
Q 022739 84 QLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFPGQS 160 (293)
Q Consensus 84 qlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~~-~~dv~~LVd~Fp~Q~ 160 (293)
++ +....+-++.|-|+...|=..|.|-||.++.+. -|+.++|..|+....+.-.++ ..++..|....++-+
T Consensus 148 --g~----~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 148 --GF----EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 221 (254)
T ss_dssp --TC----CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred --CC----CCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCC
Confidence 11 112234566688998888778999999987543 388888999887655443333 234556666666543
No 46
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=61.42 E-value=28 Score=29.59 Aligned_cols=108 Identities=12% Similarity=0.094 Sum_probs=67.3
Q ss_pred cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCc-CC----CCCCCCCCEEEecCCccccccc
Q 022739 38 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-YN----KEENPRVPIIVTGNDFSTLYAP 112 (293)
Q Consensus 38 ~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~-y~----~~~~~RVPIIVTGNDfStLYAP 112 (293)
.++-++|||.++|.= .. -+...|...-++...--+.+. .. ..+.+++-+|.+.|....+-.+
T Consensus 104 ~~~~~vl~lDEi~~l----~~---------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~ 170 (338)
T 3pfi_A 104 LSEGDILFIDEIHRL----SP---------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNP 170 (338)
T ss_dssp CCTTCEEEEETGGGC----CH---------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHH
T ss_pred ccCCCEEEEechhhc----CH---------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHH
Confidence 567799999998743 21 123445444444432222221 11 1234567899999998876666
Q ss_pred cccCCCcc-cc-ccCcCCccchhhhhcccccCC--CChHHHHHHhhhCCCCc
Q 022739 113 LIRDGRME-KF-YWAPTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQS 160 (293)
Q Consensus 113 LiRDGRMe-KF-YW~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp~Q~ 160 (293)
|.+ |.+ .+ ...|+.+++..++....+.-+ ++.+.+..|+...|+-+
T Consensus 171 L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~ 220 (338)
T 3pfi_A 171 LRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTP 220 (338)
T ss_dssp HHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCH
T ss_pred HHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCH
Confidence 655 553 22 345788999999988777655 66888888999888765
No 47
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=59.46 E-value=12 Score=31.61 Aligned_cols=88 Identities=9% Similarity=0.063 Sum_probs=44.6
Q ss_pred HHHHHHh-cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCc---
Q 022739 31 EAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF--- 106 (293)
Q Consensus 31 eAae~ik-~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDf--- 106 (293)
...+.++ .|+.++|+|.|+|.=...- ..|-+-..|++...+-. . ..++.+|.|+|+.
T Consensus 120 ~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~~~~~~---~--------~~~~~~I~~t~~~~~~ 180 (387)
T 2v1u_A 120 RLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRINQELG---D--------RVWVSLVGITNSLGFV 180 (387)
T ss_dssp HHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHGGGCC----------------CEEEEECSCSTTS
T ss_pred HHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhchhhcC---C--------CceEEEEEEECCCchH
Confidence 3334444 7889999999997532110 12334344444433210 0 3578999999987
Q ss_pred cccccccccCCCc--cccccC-cCCccchhhhhccc
Q 022739 107 STLYAPLIRDGRM--EKFYWA-PTREDRIGVCKGIF 139 (293)
Q Consensus 107 StLYAPLiRDGRM--eKFYW~-Ptred~i~iv~~if 139 (293)
..+-.++.+ |. ..+... |+.+++..++...+
T Consensus 181 ~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~ 214 (387)
T 2v1u_A 181 ENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRA 214 (387)
T ss_dssp SSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHH
T ss_pred hhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHH
Confidence 333233333 33 223333 45566666665443
No 48
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=55.48 E-value=2.9 Score=38.51 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=41.0
Q ss_pred CcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCc
Q 022739 3 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 55 (293)
Q Consensus 3 i~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Gr 55 (293)
+..+.+++.++-+.+.|+-.+ +++-+++|.. ++..+.|+|||.++|+=.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~ 141 (456)
T 2c9o_A 91 VPFCPMVGSEVYSTEIKKTEV-LMENFRRAIG-LRIKETKEVYEGEVTELTPC 141 (456)
T ss_dssp SCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC
T ss_pred ceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHh-hhhcCCcEEEEechhhcccc
Confidence 567889999999999999888 7777776643 35678899999999975543
No 49
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=53.38 E-value=3.6 Score=37.04 Aligned_cols=103 Identities=22% Similarity=0.401 Sum_probs=61.2
Q ss_pred hhhhhhccCCCcc--CCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccccCcCCccchhhhhcccccCCCChHH
Q 022739 71 ATLMNIADNPTCV--QLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDD 148 (293)
Q Consensus 71 aTLMNiaDnPt~V--qlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~Ptred~i~iv~~if~~Dg~~~~d 148 (293)
+.+.|.+|+|..- .+|..++..+ .+=|-||-|--|+..|-.|| ++
T Consensus 134 ~i~VNvvd~pel~~f~~Pa~~~~g~--~l~IaIST~Gksp~lA~~ir-------------------------------~~ 180 (274)
T 1kyq_A 134 QQLVNVADKPDLCDFYFGANLEIGD--RLQILISTNGLSPRFGALVR-------------------------------DE 180 (274)
T ss_dssp TSEEEETTCGGGBSEECCEEEEETT--TEEEEEEESSSCHHHHHHHH-------------------------------HH
T ss_pred CcEEEECCCcccCeeEeeeEEEeCC--CEEEEEECCCCCcHHHHHHH-------------------------------HH
Confidence 5567777777543 3666655432 13455666666776666665 34
Q ss_pred HHHHhhhCC----CCcchhHhhhhhhhhhH--------HHHHHHhhh----cccccccccccCCCCCCcccCCcCCHHHH
Q 022739 149 IVKLVDTFP----GQSIDFFGALRARVYDD--------EVRKWISGV----GVGSIGKSLVNSKEAAPTFEQPRMTMEKL 212 (293)
Q Consensus 149 v~~LVd~Fp----~Q~iDFFGALRaR~YDd--------~Vr~wi~~v----G~e~ig~~lvns~~~~p~f~~p~~tl~~L 212 (293)
|+.++..-| ++.++|-|.+|.++-.. .=++|+.++ +++.+.. +++++|
T Consensus 181 ie~~l~~~p~~~~~~~~~~l~~~R~~ik~~~~~~~~~~rR~~w~~~i~~~~~~~~l~~----------------~~~~~~ 244 (274)
T 1kyq_A 181 IRNLFTQMGDLALEDAVVKLGELRRGIRLLAPDDKDVKYRMDWARRCTDLFGIQHCHN----------------IDVKRL 244 (274)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHGGG----------------BCHHHH
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHhccHhHHHHhh----------------cCHHHH
Confidence 444442225 35678999999887532 345677765 5555443 457777
Q ss_pred HHHHHHHHHH
Q 022739 213 LEYGNMIVQE 222 (293)
Q Consensus 213 le~G~~lv~E 222 (293)
+..-..+..+
T Consensus 245 ~~~~~~~~~~ 254 (274)
T 1kyq_A 245 LDLFKVMFQE 254 (274)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHhhhhc
Confidence 7766555443
No 50
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=53.21 E-value=14 Score=31.67 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=23.4
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHh-ccc----ceEEEeeccc
Q 022739 13 LESGNAGEPAKLIRQRYREAADIIK-KGK----MCCLMINDLD 50 (293)
Q Consensus 13 LEs~~AGeParLIR~RYReAae~ik-~Gk----M~~L~INDLD 50 (293)
+-+++.|+-..-+|....++..... .|+ .++|||.++|
T Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 157 LFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred hccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 3345556667778888887777654 666 5699999998
No 51
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=52.11 E-value=20 Score=30.66 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=32.2
Q ss_pred CCCCEEEecCCc---cccccccccC-CCccccccC-cCCccchhhhhccc----ccCCCChHHHHHHhh
Q 022739 95 PRVPIIVTGNDF---STLYAPLIRD-GRMEKFYWA-PTREDRIGVCKGIF----RNDNVADDDIVKLVD 154 (293)
Q Consensus 95 ~RVPIIVTGNDf---StLYAPLiRD-GRMeKFYW~-Ptred~i~iv~~if----~~Dg~~~~dv~~LVd 154 (293)
.+++||+|+|+. ..+..++.+. ++ .+... |+.++...++...+ ....++.+.++.+++
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~~--~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~ 229 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLSSLGP--SVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAA 229 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHHTCCC--EEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHH
T ss_pred cceEEEEEECCCchHhhhCHHHHhcCCC--eEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHH
Confidence 678999999987 3344444331 22 44444 35666666666533 234455555444444
No 52
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=49.90 E-value=16 Score=34.22 Aligned_cols=110 Identities=16% Similarity=0.240 Sum_probs=68.1
Q ss_pred CchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCE
Q 022739 20 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 99 (293)
Q Consensus 20 eParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPI 99 (293)
...+-||.-..+|......|+-++|||.++| +|....|.. |...-++ ..|-+
T Consensus 86 ~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~----~l~~~~q~~---------LL~~le~---------------~~v~l 137 (447)
T 3pvs_A 86 SGVKEIREAIERARQNRNAGRRTILFVDEVH----RFNKSQQDA---------FLPHIED---------------GTITF 137 (447)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCEEEEEETTT----CC------C---------CHHHHHT---------------TSCEE
T ss_pred CCHHHHHHHHHHHHHhhhcCCCcEEEEeChh----hhCHHHHHH---------HHHHHhc---------------CceEE
Confidence 3456788888777777668899999999985 564333322 3333333 12455
Q ss_pred EEec--CCccccccccccCCCccccc-cCcCCccchhhhhccccc-------C--CCChHHHHHHhhhCCCC
Q 022739 100 IVTG--NDFSTLYAPLIRDGRMEKFY-WAPTREDRIGVCKGIFRN-------D--NVADDDIVKLVDTFPGQ 159 (293)
Q Consensus 100 IVTG--NDfStLYAPLiRDGRMeKFY-W~Ptred~i~iv~~if~~-------D--g~~~~dv~~LVd~Fp~Q 159 (293)
|.+. |-...+..+|.+..+ .|. -.|+.+|+..++..+++. . .++.+.++.|+...++-
T Consensus 138 I~att~n~~~~l~~aL~sR~~--v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd 207 (447)
T 3pvs_A 138 IGATTENPSFELNSALLSRAR--VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGD 207 (447)
T ss_dssp EEEESSCGGGSSCHHHHTTEE--EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSC
T ss_pred EecCCCCcccccCHHHhCcee--EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCC
Confidence 5443 444466677777544 443 347888898888887765 2 36777788887776653
No 53
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=48.71 E-value=37 Score=28.45 Aligned_cols=65 Identities=23% Similarity=0.320 Sum_probs=44.1
Q ss_pred CCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCCCh-HHHHHHhhhCCCCc
Q 022739 96 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFPGQS 160 (293)
Q Consensus 96 RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~~~-~dv~~LVd~Fp~Q~ 160 (293)
.+-+|.|-|+...|=.+|.|.||.++.+. -|+.++|..|+....+.-.++. .++..|....++-+
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 245 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCC
Confidence 34566788888877777999999887433 4888899999876655434432 33556666666543
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=48.26 E-value=23 Score=29.81 Aligned_cols=57 Identities=18% Similarity=0.319 Sum_probs=33.9
Q ss_pred HHHHHHHh-cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCcc
Q 022739 30 REAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 107 (293)
Q Consensus 30 ReAae~ik-~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfS 107 (293)
....+.++ .|+.++|+|.|+|.-...- +|-+-..|.++.++- ...++.+|+|+|+.+
T Consensus 117 ~~l~~~l~~~~~~~vlilDE~~~l~~~~---------~~~~l~~l~~~~~~~------------~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 117 RRLVKAVRDYGSQVVIVLDEIDAFVKKY---------NDDILYKLSRINSEV------------NKSKISFIGITNDVK 174 (386)
T ss_dssp HHHHHHHHTCCSCEEEEEETHHHHHHSS---------CSTHHHHHHHHHHSC------------CC--EEEEEEESCGG
T ss_pred HHHHHHHhccCCeEEEEEcChhhhhccC---------cCHHHHHHhhchhhc------------CCCeEEEEEEECCCC
Confidence 33444455 7789999999998754221 122334455544431 235788999999875
No 55
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=44.66 E-value=9.2 Score=29.96 Aligned_cols=63 Identities=8% Similarity=0.082 Sum_probs=39.6
Q ss_pred CEEEecCCcc----ccccccccCCCc-cccc-cCcCCccchhhhhcccccCC--CChHHHHHHhhhCCCCc
Q 022739 98 PIIVTGNDFS----TLYAPLIRDGRM-EKFY-WAPTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQS 160 (293)
Q Consensus 98 PIIVTGNDfS----tLYAPLiRDGRM-eKFY-W~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp~Q~ 160 (293)
.||+|+|... .+...|.+.... ..+. =.|+.+++..++..+++..| ++.+.+..|+..+++..
T Consensus 140 ~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~ 210 (242)
T 3bos_A 140 SLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDL 210 (242)
T ss_dssp EEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCH
T ss_pred eEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCH
Confidence 4899988543 233333322110 1222 23888999999988876554 67888888888887643
No 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=44.12 E-value=20 Score=29.91 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=32.9
Q ss_pred HHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCc
Q 022739 35 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 106 (293)
Q Consensus 35 ~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDf 106 (293)
.+++..-++|||.++|. +. .-+...|+.+-+++....--+ ...+.+.+-||.|.|..
T Consensus 114 ~~~~~~~~vl~lDEi~~----l~---------~~~~~~Ll~~le~~~~~~~~~--~~~~~~~~iiI~ttn~~ 170 (311)
T 4fcw_A 114 AVRRRPYSVILFDAIEK----AH---------PDVFNILLQMLDDGRLTDSHG--RTVDFRNTVIIMTSNLG 170 (311)
T ss_dssp HHHHCSSEEEEEETGGG----SC---------HHHHHHHHHHHHHSEEECTTS--CEEECTTEEEEEEESTT
T ss_pred HHHhCCCeEEEEeChhh----cC---------HHHHHHHHHHHhcCEEEcCCC--CEEECCCcEEEEecccC
Confidence 34445568999999974 22 124456777777665442101 11223445599999984
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=42.64 E-value=82 Score=30.56 Aligned_cols=106 Identities=16% Similarity=0.287 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcccceEEEeecccc--cCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEec
Q 022739 26 RQRYREAADIIKKGKMCCLMINDLDA--GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG 103 (293)
Q Consensus 26 R~RYReAae~ik~GkM~~L~INDLDA--G~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTG 103 (293)
.+|.+...+.+++.+-++|||.|+|. |.|...+. + +-+...|-.+-+ ...+.+|.+.
T Consensus 264 e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~-~-----~~~~~~L~~~l~---------------~~~~~~I~at 322 (758)
T 1r6b_X 264 EKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG-Q-----VDAANLIKPLLS---------------SGKIRVIGST 322 (758)
T ss_dssp HHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC-H-----HHHHHHHSSCSS---------------SCCCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc-h-----HHHHHHHHHHHh---------------CCCeEEEEEe
Confidence 34445555666655569999999994 44432211 1 111112222211 2456788887
Q ss_pred CCcc-----ccccccccCCCcccccc-CcCCccchhhhhccccc------CCCChHHHHHHhh
Q 022739 104 NDFS-----TLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRN------DNVADDDIVKLVD 154 (293)
Q Consensus 104 NDfS-----tLYAPLiRDGRMeKFYW-~Ptred~i~iv~~if~~------Dg~~~~dv~~LVd 154 (293)
|.-. .+=..|.| |..++.- .|+.+++..|+.++.+. -.++.+.+..++.
T Consensus 323 ~~~~~~~~~~~d~aL~~--Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~ 383 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALAR--RFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVE 383 (758)
T ss_dssp CHHHHHCCCCCTTSSGG--GEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHh--CceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 7421 11133554 6665544 48999999999887643 2456666665553
No 58
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=37.08 E-value=1.2e+02 Score=29.55 Aligned_cols=149 Identities=13% Similarity=0.224 Sum_probs=73.3
Q ss_pred cceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCcc
Q 022739 4 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV 83 (293)
Q Consensus 4 ~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~V 83 (293)
..|.+..+++-+...+..+.+. +.+++..-++|||.++| .+. .-+...|..+-|+-...
T Consensus 551 ~~i~i~~s~~~~~~~~~~~~l~--------~~~~~~~~~vl~lDEi~----~~~---------~~~~~~Ll~~le~g~~~ 609 (758)
T 3pxi_A 551 SMIRIDMSEYMEKHSTSGGQLT--------EKVRRKPYSVVLLDAIE----KAH---------PDVFNILLQVLEDGRLT 609 (758)
T ss_dssp CEEEEEGGGGCSSCCCC---CH--------HHHHHCSSSEEEEECGG----GSC---------HHHHHHHHHHHHHSBCC
T ss_pred ceEEEechhcccccccccchhh--------HHHHhCCCeEEEEeCcc----ccC---------HHHHHHHHHHhccCeEE
Confidence 3456667777666666533322 34455677899999996 332 23445566666653322
Q ss_pred CCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccccCcCCccchhhhhcccccCCCChHHHHHHhhhCCCCcchh
Q 022739 84 QLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDF 163 (293)
Q Consensus 84 qlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q~iDF 163 (293)
-..| +..+...+-||.|.|--+.....+... +.+ ...|..-.|++. ++.-..++.+++..+++.|= ..
T Consensus 610 ~~~g--~~~~~~~~~iI~ttn~~~~~~~~~~~~--~~~-~f~p~l~~Rl~~---~i~~~~l~~~~~~~i~~~~l----~~ 677 (758)
T 3pxi_A 610 DSKG--RTVDFRNTILIMTSNVGASEKDKVMGE--LKR-AFRPEFINRIDE---IIVFHSLEKKHLTEIVSLMS----DQ 677 (758)
T ss_dssp -------CCBCTTCEEEEEESSSTTCCHHHHHH--HHH-HSCHHHHTTSSE---EEECC--CHHHHHHHHHHHH----HH
T ss_pred cCCC--CEeccCCeEEEEeCCCChhhHHHHHHH--HHh-hCCHHHHhhCCe---EEecCCCCHHHHHHHHHHHH----HH
Confidence 2222 234457889999999544321110000 000 011211122211 22233466777777777642 22
Q ss_pred Hhh-h----hhhhhhHHHHHHHhhhcc
Q 022739 164 FGA-L----RARVYDDEVRKWISGVGV 185 (293)
Q Consensus 164 FGA-L----RaR~YDd~Vr~wi~~vG~ 185 (293)
+.. + +.-.+++++.+||.+.|.
T Consensus 678 ~~~~~~~~~~~~~~~~~a~~~l~~~~~ 704 (758)
T 3pxi_A 678 LTKRLKEQDLSIELTDAAKAKVAEEGV 704 (758)
T ss_dssp HHHHHHTTTCEEEECHHHHHHHHGGGC
T ss_pred HHHHHHhCCCeEEECHHHHHHHHHhCC
Confidence 211 1 123588999999977654
No 59
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=34.53 E-value=11 Score=27.46 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcccccccccccCCCCCCcccCCcCCHHHHHHHHHHHHHHHHHHh
Q 022739 174 DEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVK 227 (293)
Q Consensus 174 d~Vr~wi~~vG~e~ig~~lvns~~~~p~f~~p~~tl~~Lle~G~~lv~EQe~V~ 227 (293)
++|.+|+..+|++.....+....=.-..+ +.+|-+.|.+-|=.-..-+..+.
T Consensus 13 ~~V~~WL~~lgl~~Y~~~F~~~~idg~~L--l~Lt~~dL~~lGI~~~ghr~kIl 64 (81)
T 3bq7_A 13 EEVAAWLEHLSLCEYKDIFTRHDIRGSGL--LHLERRDLKDLGVTKVGHMKRIL 64 (81)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHTTCCHHHH--TTCCHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHcCCCHHHH--CcCCHHHHhHcCCCCHHHHHHHH
Confidence 67899999999888777665432221222 67777888777755455555543
No 60
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.02 E-value=9.8 Score=27.76 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHhhhcccccccccccCCCCCCccc-CCcCCHHHHHHHHHHHHHHHHHHhh
Q 022739 170 RVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFE-QPRMTMEKLLEYGNMIVQEQENVKR 228 (293)
Q Consensus 170 R~YDd~Vr~wi~~vG~e~ig~~lvns~~~~p~f~-~p~~tl~~Lle~G~~lv~EQe~V~~ 228 (293)
|.--..|.+|+..+|++.-...+....=....+- ...+|-+.|.+-|=....-|+.+.+
T Consensus 9 ~~~~~~V~~WL~~lgL~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~~ghR~kIl~ 68 (80)
T 2eam_A 9 RCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQ 68 (80)
T ss_dssp CCCCCCHHHHHHHHTCGGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCCHHHHHHHHH
T ss_pred CCChhHHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHH
Confidence 4445689999999999998888776432222222 2589999999988777777776653
No 61
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=28.65 E-value=60 Score=24.03 Aligned_cols=25 Identities=8% Similarity=0.248 Sum_probs=16.7
Q ss_pred HHHHHHHHHh-cccceEEEeeccccc
Q 022739 28 RYREAADIIK-KGKMCCLMINDLDAG 52 (293)
Q Consensus 28 RYReAae~ik-~GkM~~L~INDLDAG 52 (293)
+.++..+.++ .++-++|+|.|+|.=
T Consensus 102 ~~~~~~~~~~~~~~~~vl~iDe~~~l 127 (187)
T 2p65_A 102 RLKSILKEVQDAEGQVVMFIDEIHTV 127 (187)
T ss_dssp HHHHHHHHHHHTTTSEEEEETTGGGG
T ss_pred HHHHHHHHHHhcCCceEEEEeCHHHh
Confidence 3344444444 567789999999863
No 62
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=27.29 E-value=29 Score=27.06 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=42.9
Q ss_pred hhhhHHHHHHHhhhcccccccccccCCCCCCcccCC---cCCHHHHHHHHHHHHHHHHHHhh
Q 022739 170 RVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQP---RMTMEKLLEYGNMIVQEQENVKR 228 (293)
Q Consensus 170 R~YDd~Vr~wi~~vG~e~ig~~lvns~~~~p~f~~p---~~tl~~Lle~G~~lv~EQe~V~~ 228 (293)
|.-+..|.+|+..+|++.-...+....=. .++.. .+|-+.|.+.|=..+.-|+.+.+
T Consensus 26 ~~~~~~V~eWL~~LgL~qY~~~F~~~g~d--~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~ 85 (101)
T 2lmr_A 26 RTLEQSVGEWLESIGLQQYESKLLLNGFD--DVHFLGSNVMEEQDLRDIGISDPQHRRKLLQ 85 (101)
T ss_dssp CCSSCCHHHHHHHHTCGGGHHHHHHTTCC--CTTSTTTSCCCHHHHHHHTCCCHHHHHHHHH
T ss_pred CCCcccHHHHHHHCCCHHHHHHHHHcCCC--hHHHHhhccCCHHHHHHCCCCCHHHHHHHHH
Confidence 45566899999999999888877754322 22333 69999999999888888888753
No 63
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=26.93 E-value=26 Score=26.35 Aligned_cols=61 Identities=7% Similarity=0.067 Sum_probs=43.5
Q ss_pred hHHHHHHHhhhcccccccccccCCC-CCCcccCCcCCHHHHHHHHHHHHHHHHHHh-hhhhHHHH
Q 022739 173 DDEVRKWISGVGVGSIGKSLVNSKE-AAPTFEQPRMTMEKLLEYGNMIVQEQENVK-RVQLADKY 235 (293)
Q Consensus 173 Dd~Vr~wi~~vG~e~ig~~lvns~~-~~p~f~~p~~tl~~Lle~G~~lv~EQe~V~-~~~Ls~eY 235 (293)
+..|.+|+..+|++.-...+....= .... =..+|-+.|.+.|-....-|+.+. .++.-...
T Consensus 15 ~~~V~~WL~~lgL~qY~~~F~~~g~~~~~~--l~~lt~~DL~~lGI~~~GHrkkIl~ai~~L~~~ 77 (91)
T 1x40_A 15 NVDIKDFLMSINLEQYLLHFHESGFTTVKD--CAAINDSLLQKIGISPTGHRRRILKQLQIILSK 77 (91)
T ss_dssp CCBHHHHHHTTTCGGGHHHHHHHTCCBSGG--GGGCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCCcHHH--HhhcCHHHHHHCCCCCHhHHHHHHHHHHHHHhh
Confidence 5679999999999998888775421 2222 257899999999988888888774 34433333
No 64
>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP: d.283.1.1
Probab=26.77 E-value=33 Score=31.94 Aligned_cols=108 Identities=13% Similarity=0.113 Sum_probs=65.7
Q ss_pred chHHHHHHHHHHHHHHh-----cccceEEEeeccccc-CCcC----------CCCccee-ecchhhhhhhhhhccCCCcc
Q 022739 21 PAKLIRQRYREAADIIK-----KGKMCCLMINDLDAG-AGRM----------GGTTQYT-VNNQMVNATLMNIADNPTCV 83 (293)
Q Consensus 21 ParLIR~RYReAae~ik-----~GkM~~L~INDLDAG-~Grf----------~~~TQ~T-VNnQ~V~aTLMNiaDnPt~V 83 (293)
|.++.++--++|....+ .|||.++|=+..=+. +|.| .+++-++ -=||-|-.-++||-|+||.-
T Consensus 222 ~~~~~~~a~~~a~~~l~a~~~~~G~~~Vvl~p~~~~~ll~~~~~~l~~~~v~~g~S~l~~klG~~v~s~~vti~DDp~~~ 301 (451)
T 1vpb_A 222 KKGIGQKALERVLRKLGQKKVQSGKYTMVVDPMNSSRLLSPMISALNGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLV 301 (451)
T ss_dssp CSSHHHHHHHHHHTTTTCBCCCCEEEEEEECTTTHHHHHHHHHHTTBHHHHHTTCCTTTTCTTSBCSCTTCCEEECTTCT
T ss_pred HHHHHHHHHHHHHHhcCCcCCCCCeEeEEECchHHHHHHHHHHHhcCcHHHHcCCccccccCCCeecCCCcEEEECCCCC
Confidence 77888888888877654 799999987665211 0000 1112221 12456668899999999976
Q ss_pred CCCCc--CCCC--CCCCCCEEEec----CCccccccc---cccCC-CccccccCcCC
Q 022739 84 QLPGM--YNKE--ENPRVPIIVTG----NDFSTLYAP---LIRDG-RMEKFYWAPTR 128 (293)
Q Consensus 84 qlpg~--y~~~--~~~RVPIIVTG----NDfStLYAP---LiRDG-RMeKFYW~Ptr 128 (293)
.-.|+ |+.+ +..|++||==| ==+++..|- +-.-| ||.-+|-+|-.
T Consensus 302 ~~~gs~~fDdEGvpt~~~~LIe~GvL~~~l~d~~tA~~~G~~~TGnr~~N~~i~pG~ 358 (451)
T 1vpb_A 302 KASGARYFDNEGIATERRSIFDKGVLNTYFIDTYNAKKMGVDPTISGSSILVMETGD 358 (451)
T ss_dssp TCTTCCSBCTTCBBCCCEEEEETTEECCCBCCHHHHHHHTSCCCCSSCSCEEECCCS
T ss_pred CCCCCCCCCCCCcCCcccEEEECCEEeccccCHHHHHHcCCCCCCCCcccEEEeCCC
Confidence 44444 4554 56799988433 112222232 23345 99999999853
No 65
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.43 E-value=25 Score=29.60 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=47.2
Q ss_pred CCCCEEEecCCccccccccccCCCcccccc-CcCCccchhhhhcccccCC--CChHHHHHHhhhCCCC
Q 022739 95 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQ 159 (293)
Q Consensus 95 ~RVPIIVTGNDfStLYAPLiRDGRMeKFYW-~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp~Q 159 (293)
..+.+|+++|+...+..+|.+. ...+.. .|+.++...++..+++..+ ++++.++.|++...|-
T Consensus 162 ~~~~~il~~~~~~~l~~~l~sR--~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~ 227 (353)
T 1sxj_D 162 GVTRFCLICNYVTRIIDPLASQ--CSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD 227 (353)
T ss_dssp TTEEEEEEESCGGGSCHHHHHH--SEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC
T ss_pred CCceEEEEeCchhhCcchhhcc--CceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 3567899999999988887764 445544 4677888899988887766 6788888888776653
No 66
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.39 E-value=35 Score=26.29 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=40.6
Q ss_pred HHHHHHHhhhcccccccccccCCCC-CCcccCCcCCHHHHHHHHHHHHHHHHHHhh
Q 022739 174 DEVRKWISGVGVGSIGKSLVNSKEA-APTFEQPRMTMEKLLEYGNMIVQEQENVKR 228 (293)
Q Consensus 174 d~Vr~wi~~vG~e~ig~~lvns~~~-~p~f~~p~~tl~~Lle~G~~lv~EQe~V~~ 228 (293)
..|.+|+..+|++.-...++...=. .-.+ ..+|.+.|.+.|-..+.-|+.+.+
T Consensus 24 ~sV~eWL~~igL~qY~~~F~~~g~d~le~l--~~lt~~DL~~lGIt~~gHrkkIl~ 77 (97)
T 2dl0_A 24 SSVSDWLISIGLPMYAGTLSTAGFSTLSQV--PSLSHTCLQEAGITEERHIRKLLS 77 (97)
T ss_dssp CSHHHHHHHHTCGGGHHHHHHHTCCSTTSG--GGCCHHHHHHHTCCCHHHHHHHHH
T ss_pred CcHHHHHHHCCCHHHHHHHHHcCCCcHHHH--HhcCHHHHHHCCCCCHHHHHHHHH
Confidence 5688999999999988888753322 2223 348999999999998888888753
No 67
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=24.24 E-value=1.2e+02 Score=26.44 Aligned_cols=92 Identities=15% Similarity=0.225 Sum_probs=60.6
Q ss_pred cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCC
Q 022739 38 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 117 (293)
Q Consensus 38 ~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDG 117 (293)
.|+-.+++|.+.|. +. .+..|+ |..+-.+| .+.+-+|.+.|+.+.|..++...
T Consensus 106 ~~~~kvviIdead~----l~--------~~a~na-LLk~lEep-------------~~~~~~Il~t~~~~~l~~ti~SR- 158 (334)
T 1a5t_A 106 LGGAKVVWVTDAAL----LT--------DAAANA-LLKTLEEP-------------PAETWFFLATREPERLLATLRSR- 158 (334)
T ss_dssp TSSCEEEEESCGGG----BC--------HHHHHH-HHHHHTSC-------------CTTEEEEEEESCGGGSCHHHHTT-
T ss_pred cCCcEEEEECchhh----cC--------HHHHHH-HHHHhcCC-------------CCCeEEEEEeCChHhCcHHHhhc-
Confidence 57889999999874 32 122343 34444444 35678888889999898887764
Q ss_pred CccccccC-cCCccchhhhhcccccCCCChHHHHHHhhhCCCCc
Q 022739 118 RMEKFYWA-PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQS 160 (293)
Q Consensus 118 RMeKFYW~-Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q~ 160 (293)
...|... |+.++...++.... .++.+.+..++..--|.+
T Consensus 159 -c~~~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~~~s~G~~ 198 (334)
T 1a5t_A 159 -CRLHYLAPPPEQYAVTWLSREV---TMSQDALLAALRLSAGSP 198 (334)
T ss_dssp -SEEEECCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCH
T ss_pred -ceeeeCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCH
Confidence 4456666 46677777776665 567777777776655543
No 68
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=23.51 E-value=43 Score=28.13 Aligned_cols=31 Identities=6% Similarity=0.294 Sum_probs=24.5
Q ss_pred CCccccccCcCCccchhhhhcccccCCCChHHHHHHhhhCCCC
Q 022739 117 GRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 159 (293)
Q Consensus 117 GRMeKFYW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q 159 (293)
|++|.||..|+ ..++ -|..+|.+.+..-|+.
T Consensus 56 gk~DVYY~SP~-GKkf-----------RSk~Ev~ryL~~~~~~ 86 (133)
T 1ub1_A 56 GKYDVYLINPQ-GKAF-----------RSKVELIAYFEKVGDT 86 (133)
T ss_dssp CSEEEEEECTT-SCEE-----------SSHHHHHHHHTTSCCC
T ss_pred CceeEEEECCC-CCee-----------eCHHHHHHHHHHCCcc
Confidence 89999999997 4444 5788888888877763
No 69
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.27 E-value=14 Score=31.45 Aligned_cols=63 Identities=13% Similarity=0.288 Sum_probs=45.7
Q ss_pred CCCCEEEecCCccccccccccCCCccccccC-cCCccchhhhhcccccCCCC---hHHHHHHhhhCCCC
Q 022739 95 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA---DDDIVKLVDTFPGQ 159 (293)
Q Consensus 95 ~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~-Ptred~i~iv~~if~~Dg~~---~~dv~~LVd~Fp~Q 159 (293)
+.+.||++.|+.+.+..+|.... ..|... |+.+++..++..+.+..|+. ++.+..|+...+|-
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~ 229 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQC--LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGN 229 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTS--EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHhhc--eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCC
Confidence 35789999999999888876543 455554 67788888988888776654 66777777665543
No 70
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=23.07 E-value=38 Score=24.34 Aligned_cols=52 Identities=21% Similarity=0.425 Sum_probs=35.1
Q ss_pred HHHHHHHhhhcccccccccccCCCCCCcccCCcCCHHHHHHHHHHHHHHHHHHh
Q 022739 174 DEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVK 227 (293)
Q Consensus 174 d~Vr~wi~~vG~e~ig~~lvns~~~~p~f~~p~~tl~~Lle~G~~lv~EQe~V~ 227 (293)
++|.+|+..+|++.....+....=.-. .=+.+|-+.|.+.|=.-..-|..+.
T Consensus 8 ~~V~~WL~~lgl~~Y~~~F~~~~idg~--~Ll~Lt~~dL~~lGI~~~Ghr~kIl 59 (76)
T 2f3n_A 8 FDVGDWLESIHLGEHRDRFEDHEIEGA--HLPALTKEDFVELGVTRVGHRENIE 59 (76)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHTTCCGG--GGGGCCHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHcCCCHH--HHccCCHHHHHHcCCCChhHHHHHH
Confidence 678999999999887776654322111 3357888888877766566665554
No 71
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.91 E-value=53 Score=26.94 Aligned_cols=24 Identities=46% Similarity=0.904 Sum_probs=16.1
Q ss_pred CCCCCchHH--HHHHHHHHHHHHhcc
Q 022739 16 GNAGEPAKL--IRQRYREAADIIKKG 39 (293)
Q Consensus 16 ~~AGeParL--IR~RYReAae~ik~G 39 (293)
+..|||+.| ||..|++|-+.|.+|
T Consensus 4 ~~~~e~~~l~~ik~~h~~AF~~Is~A 29 (116)
T 2dl1_A 4 GSSGEPAEIKIIREAYKKAFLFVNKG 29 (116)
T ss_dssp CCTTSCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 556777654 677788887777643
No 72
>3tv9_A Putative peptide maturation protein; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta, cytosol; 2.50A {Shigella flexneri}
Probab=22.80 E-value=52 Score=31.11 Aligned_cols=108 Identities=17% Similarity=0.218 Sum_probs=64.5
Q ss_pred CchHHHHHHHHHHHHHHh-----cccceEEEeeccccc-----CCcCC------CCccee-ecchhhhhhhhhhccCCCc
Q 022739 20 EPAKLIRQRYREAADIIK-----KGKMCCLMINDLDAG-----AGRMG------GTTQYT-VNNQMVNATLMNIADNPTC 82 (293)
Q Consensus 20 eParLIR~RYReAae~ik-----~GkM~~L~INDLDAG-----~Grf~------~~TQ~T-VNnQ~V~aTLMNiaDnPt~ 82 (293)
+|.++.++--++|....+ .|||.++|=+..=+. +|-|. +++-+. -=||-|-.-++||.|+||.
T Consensus 228 ~~~~i~~~a~~~a~~~L~a~~~~~G~~~Vvl~p~~~~~ll~~~~~~~~g~~~~~g~S~l~~klGe~v~s~~vti~DDp~~ 307 (457)
T 3tv9_A 228 TPEWVGADCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFLLDSLGKQILPDWLTIEEHPHL 307 (457)
T ss_dssp CHHHHHHHHHHHHHHTSSCBCCCSCEEEEEECHHHHHHHHHHHHHHSBHHHHHTTCCTTTTCTTSBCSCTTCCEEECTTC
T ss_pred CHHHHHHHHHHHHHHhcCCcCCCCcEEEEEECcHHHHHHHHHHHHhcChHHHhcCCccchhcCCCeecCCceEEEECCCC
Confidence 477777877777777765 799999985543221 11221 111111 1245577889999999997
Q ss_pred cCCCCc--CCCC--CCCCCCEEEec----CCccccccc---cccCC---CccccccCcC
Q 022739 83 VQLPGM--YNKE--ENPRVPIIVTG----NDFSTLYAP---LIRDG---RMEKFYWAPT 127 (293)
Q Consensus 83 Vqlpg~--y~~~--~~~RVPIIVTG----NDfStLYAP---LiRDG---RMeKFYW~Pt 127 (293)
-.-.|+ |+.+ +..|++||==| ==+++..|- +-.-| ||.-+|-+|-
T Consensus 308 ~~~~gs~~fDdEGv~t~~~~lIe~GvL~~~l~d~~~A~~~G~~~TGna~~~~N~~i~~G 366 (457)
T 3tv9_A 308 LKGLASTPFDSEGVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHAGGIHNWRIAGQ 366 (457)
T ss_dssp TTCSSCCSSCTTCBCCCCEEEEETTEECCCBCCHHHHHHHTSCCCSCTTCCCCEEECCC
T ss_pred CCCCCCCCCCCCCCcCCccEEEECCEEcccCcCHHHHHHhCCCCCcccCCcccEEEeCC
Confidence 654554 5555 56788888422 112222221 23334 8999999883
No 73
>3qtd_A PMBA protein; putative modulator of gyrase (PMBA), structural genomics, PS biology, midwest center for structural genomics, MCSG; 2.70A {Pseudomonas aeruginosa}
Probab=22.49 E-value=51 Score=30.89 Aligned_cols=108 Identities=14% Similarity=0.249 Sum_probs=66.2
Q ss_pred CchHHHHHHHHHHHHHHh-----cccceEEEeeccccc-----CCcCC------CCcce--eecchhhhhhhhhhccCCC
Q 022739 20 EPAKLIRQRYREAADIIK-----KGKMCCLMINDLDAG-----AGRMG------GTTQY--TVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 20 eParLIR~RYReAae~ik-----~GkM~~L~INDLDAG-----~Grf~------~~TQ~--TVNnQ~V~aTLMNiaDnPt 81 (293)
+|.++.++--++|....+ .|||.++|=+..=+. .|-|. +++-+ .+ ||-|-.-++||.|+||
T Consensus 217 ~~~~i~~~a~~~a~~~L~a~~~~~G~~~Vvl~p~~~~~ll~~~~~~~~g~~v~~g~S~l~~kl-G~~v~s~~vti~dDp~ 295 (449)
T 3qtd_A 217 SAESIGRRAAERAASRLGARPVQTAEVPVLFAPEIAVGLFGHFLGAISGGSLYRKSSFLEGAL-GQRLFPEWLSIDERPH 295 (449)
T ss_dssp CHHHHHHHHHHHHHHTTTCBCCCCEEEEEEECHHHHHHHHHHHHHHTBHHHHHTTCCTTTTCT-TCBCSCTTCCEEECTT
T ss_pred CHHHHHHHHHHHHHHhcCCccCCCCeEEEEECChHHHHHHHHHHHhcChhhHhcCCCcccccC-CCEecCCceEEEECCC
Confidence 478888888888887765 799999985543221 11121 11211 13 4557788999999999
Q ss_pred ccCCCCc--CCCC--CCCCCCEEEec----CCccccccc---cccCC---CccccccCcCC
Q 022739 82 CVQLPGM--YNKE--ENPRVPIIVTG----NDFSTLYAP---LIRDG---RMEKFYWAPTR 128 (293)
Q Consensus 82 ~Vqlpg~--y~~~--~~~RVPIIVTG----NDfStLYAP---LiRDG---RMeKFYW~Ptr 128 (293)
.-.-.|+ |+.+ +..|++||==| ==+++.+|- +-.-| ||.-+|-+|-.
T Consensus 296 ~~~~~gs~~fDdEGv~t~~~~lIe~GvL~~~l~d~~~A~~~G~~~TGna~~~~N~~i~~G~ 356 (449)
T 3qtd_A 296 LVGALGSASFDSDGLATYAKPFVENGELVSYVLGTYSGRKLGLPSTANAGGVHNLFVSHGD 356 (449)
T ss_dssp CTTCTTCCSBCTTCBBCCCEEEEETTEECCCBCCHHHHHHHTSCCCSCTTCCSSEEECCCS
T ss_pred CCCCCCCCCCCCCCCcCCccEEEECCEEcccccCHHHHHHhCCCCCcCccCcceEEEeCCC
Confidence 7654554 5555 57788888422 112222221 23334 89999988844
No 74
>2o5g_B CAM, smooth muscle myosin light chain kinase peptide; protein-peptide complex, metal binding protein; 1.08A {Gallus gallus}
Probab=22.27 E-value=30 Score=22.17 Aligned_cols=21 Identities=10% Similarity=0.485 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHh-cccceEE
Q 022739 24 LIRQRYREAADIIK-KGKMCCL 44 (293)
Q Consensus 24 LIR~RYReAae~ik-~GkM~~L 44 (293)
+||+|+.++...|. =|+|+.|
T Consensus 1 ~~rrkWqKtgnAv~Al~Rma~m 22 (26)
T 2o5g_B 1 XARRKWQKTGHAVRAIGRLSXX 22 (26)
T ss_pred CHHHHHHHHHHHHHHHHHHhcc
Confidence 58999999999998 8888765
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=21.95 E-value=81 Score=30.81 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=49.0
Q ss_pred CCCCEEEecCCcc-----ccccccccCCCccccccC-cCCccchhhhhccccc----C--CCChHHHHHHhh--------
Q 022739 95 PRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRN----D--NVADDDIVKLVD-------- 154 (293)
Q Consensus 95 ~RVPIIVTGNDfS-----tLYAPLiRDGRMeKFYW~-Ptred~i~iv~~if~~----D--g~~~~dv~~LVd-------- 154 (293)
..+.+|.|.|.-. .+=..|.| |..+++-. |+.+++..|++++... . .++.+.+..++.
T Consensus 290 ~~v~~I~at~~~~~~~~~~~d~al~r--Rf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~ 367 (758)
T 3pxi_A 290 GELQCIGATTLDEYRKYIEKDAALER--RFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD 367 (758)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred CCEEEEeCCChHHHHHHhhccHHHHh--hCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccc
Confidence 3578898888655 34344666 88776654 8999999999877554 2 356666666554
Q ss_pred -hCCCCcchhHhhhhhh
Q 022739 155 -TFPGQSIDFFGALRAR 170 (293)
Q Consensus 155 -~Fp~Q~iDFFGALRaR 170 (293)
.+|+.++|+.-...++
T Consensus 368 ~~~p~~ai~ll~~a~~~ 384 (758)
T 3pxi_A 368 RFLPDKAIDLIDEAGSK 384 (758)
T ss_dssp SCTTHHHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHH
Confidence 2466677777655443
No 76
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=21.84 E-value=1.2e+02 Score=28.19 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=36.5
Q ss_pred CCCEEEecCCcc-----ccccccccCCCcccccc-CcCCccchhhhhccccc----C--CCChHHHHHHhh
Q 022739 96 RVPIIVTGNDFS-----TLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRN----D--NVADDDIVKLVD 154 (293)
Q Consensus 96 RVPIIVTGNDfS-----tLYAPLiRDGRMeKFYW-~Ptred~i~iv~~if~~----D--g~~~~dv~~LVd 154 (293)
.+-+|.+.|.-. .+-..|.| |..+++- .|+.++++.|+.++... - .++++.+..++.
T Consensus 291 ~v~vI~at~~~e~~~~~~~~~al~~--Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~ 359 (468)
T 3pxg_A 291 ELQCIGATTLDEYRKYIEKDAALER--RFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVK 359 (468)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHH--SEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHH
T ss_pred CEEEEecCCHHHHHHHhhcCHHHHH--hCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 567888777554 23344555 7777665 48899999999877654 2 345555555543
No 77
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.49 E-value=53 Score=25.01 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=32.5
Q ss_pred HHHHHHHhhhcccc--cccccccCC-CCCCcccCCcCCHHHHHHHHHHHHHHHHHH
Q 022739 174 DEVRKWISGVGVGS--IGKSLVNSK-EAAPTFEQPRMTMEKLLEYGNMIVQEQENV 226 (293)
Q Consensus 174 d~Vr~wi~~vG~e~--ig~~lvns~-~~~p~f~~p~~tl~~Lle~G~~lv~EQe~V 226 (293)
++|.+|+..+|++. ....+.... .|. .=..+|-+.|.+.|-.-...+..+
T Consensus 33 ~~V~~WL~~lgl~~~~y~~~F~~~~I~G~---~Ll~Lt~~dLkeLGI~~~G~R~ki 85 (103)
T 2e8o_A 33 EQVCSFLRRGGFEEPVLLKNIRENEITGA---LLPCLDESRFENLGVSSLGERKKL 85 (103)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTCCTT---TTTTCCHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHcCCCHH---HHHhCCHHHHHHcCCCCHHHHHHH
Confidence 78999999999887 666554332 221 235677888887776555555554
No 78
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=20.79 E-value=23 Score=25.95 Aligned_cols=55 Identities=5% Similarity=0.148 Sum_probs=41.4
Q ss_pred hhHHHHHHHhhhcccccccccccCCC-CCCcccCCcCCHHHHHHHHHHHHHHHHHHhh
Q 022739 172 YDDEVRKWISGVGVGSIGKSLVNSKE-AAPTFEQPRMTMEKLLEYGNMIVQEQENVKR 228 (293)
Q Consensus 172 YDd~Vr~wi~~vG~e~ig~~lvns~~-~~p~f~~p~~tl~~Lle~G~~lv~EQe~V~~ 228 (293)
....|.+|+..+|++..-..++...= ....+. .+|-+.|.+-|-....-|..+.+
T Consensus 11 ~~~~V~eWL~~i~L~~Y~~~F~~~gy~~~~~~~--~lt~~DL~~lGI~~~ghrkkil~ 66 (78)
T 1v38_A 11 NHQTIQEFLERIHLQEYTSTLLLNGYETLDDLK--DIKESHLIELNIADPEDRARLLS 66 (78)
T ss_dssp SCCBHHHHHHTTTCGGGHHHHHHHTCCBHHHHT--TCCHHHHHHTTTCCHHHHHHHHH
T ss_pred CcCcHHHHHHHCCCHHHHHHHHHcCCCCHHHHh--hcCHHHHHHcCCCCHHHHHHHHH
Confidence 34578899999999998888875432 222232 59999999999888888888764
No 79
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=20.72 E-value=29 Score=29.48 Aligned_cols=102 Identities=14% Similarity=0.224 Sum_probs=66.3
Q ss_pred cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCC
Q 022739 38 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 117 (293)
Q Consensus 38 ~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDG 117 (293)
.|+-.+|+|.|+|. +.. ... ..|..+.++| ...+-+|++.|+...+...|...+
T Consensus 117 ~~~~~vliiDe~~~----l~~--------~~~-~~Ll~~le~~-------------~~~~~~Il~~~~~~~l~~~l~sr~ 170 (373)
T 1jr3_A 117 RGRFKVYLIDEVHM----LSR--------HSF-NALLKTLEEP-------------PEHVKFLLATTDPQKLPVTILSRC 170 (373)
T ss_dssp SSSSEEEEEECGGG----SCH--------HHH-HHHHHHHHSC-------------CSSEEEEEEESCGGGSCHHHHTTS
T ss_pred cCCeEEEEEECcch----hcH--------HHH-HHHHHHHhcC-------------CCceEEEEEeCChHhCcHHHHhhe
Confidence 57778999998764 321 111 2344444442 245788999998888877766543
Q ss_pred Cccccc-cCcCCccchhhhhcccccCCC--ChHHHHHHhhhCCCCcchhHhhh
Q 022739 118 RMEKFY-WAPTREDRIGVCKGIFRNDNV--ADDDIVKLVDTFPGQSIDFFGAL 167 (293)
Q Consensus 118 RMeKFY-W~Ptred~i~iv~~if~~Dg~--~~~dv~~LVd~Fp~Q~iDFFGAL 167 (293)
..+. ..|+.++...++..+++..|+ +.+.+..|+...+|-+-+.-..|
T Consensus 171 --~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 171 --LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp --EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred --eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 3333 357889999999988877665 46667778887777655444433
Done!