Query 022740
Match_columns 293
No_of_seqs 315 out of 1501
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0872 Sterol C5 desaturase [ 100.0 2.1E-55 4.6E-60 391.8 19.0 265 21-290 2-269 (312)
2 KOG0873 C-4 sterol methyl oxid 100.0 1.5E-37 3.3E-42 281.0 14.8 221 61-288 32-264 (283)
3 COG3000 ERG3 Sterol desaturase 100.0 7.2E-32 1.6E-36 248.4 22.7 190 95-291 45-244 (271)
4 PLN02869 fatty aldehyde decarb 99.9 1.5E-26 3.2E-31 228.1 16.8 141 146-291 127-283 (620)
5 KOG0874 Sphingolipid hydroxyla 99.9 3.7E-26 8.1E-31 198.9 0.6 141 146-289 122-271 (287)
6 PF04116 FA_hydroxylase: Fatty 99.8 2.1E-18 4.5E-23 137.4 8.4 107 151-261 2-114 (114)
7 PLN02434 fatty acid hydroxylas 99.4 8.9E-12 1.9E-16 112.2 13.8 134 145-289 82-235 (237)
8 KOG0539 Sphingolipid fatty aci 98.7 7.9E-08 1.7E-12 84.2 10.1 134 143-285 80-234 (240)
9 PRK07424 bifunctional sterol d 98.0 3.9E-05 8.5E-10 74.8 9.6 129 152-283 14-175 (406)
10 PLN02601 beta-carotene hydroxy 97.9 0.00046 9.9E-09 63.0 14.3 122 140-272 127-272 (303)
11 PF10520 Kua-UEV1_localn: Kua- 86.5 1.5 3.3E-05 38.2 5.3 31 250-280 124-155 (178)
12 KOG3011 Ubiquitin-conjugating 77.3 5.5 0.00012 36.4 5.5 129 143-278 106-260 (293)
13 cd03505 Delta9-FADS-like The D 67.4 80 0.0017 27.4 10.3 18 171-188 53-70 (178)
14 PF13268 DUF4059: Protein of u 61.6 63 0.0014 23.9 8.7 26 55-80 4-29 (72)
15 KOG1600 Fatty acid desaturase 48.4 25 0.00054 33.4 4.1 21 174-195 120-140 (321)
16 PF10520 Kua-UEV1_localn: Kua- 44.5 1.2E+02 0.0027 26.3 7.6 46 142-187 83-138 (178)
17 PLN02434 fatty acid hydroxylas 35.1 59 0.0013 29.6 4.3 40 146-186 166-208 (237)
18 KOG3145 Cystine transporter Cy 32.4 4.5E+02 0.0098 25.1 10.1 50 81-134 179-230 (372)
19 PF09980 DUF2214: Predicted me 27.9 3.7E+02 0.0081 22.7 8.3 36 95-131 113-148 (150)
20 TIGR00964 secE_bact preprotein 25.2 1.7E+02 0.0038 20.0 4.4 27 92-118 13-39 (55)
21 PLN02220 delta-9 acyl-lipid de 23.6 3.1E+02 0.0067 25.8 7.1 19 251-269 241-260 (299)
22 PF01102 Glycophorin_A: Glycop 23.3 1.3E+02 0.0028 24.6 3.9 11 87-97 91-101 (122)
23 PF13703 PepSY_TM_2: PepSY-ass 21.6 3.5E+02 0.0075 20.1 8.3 22 59-80 17-38 (88)
24 COG0690 SecE Preprotein transl 20.1 2.9E+02 0.0063 20.2 5.0 27 92-118 32-58 (73)
No 1
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-55 Score=391.79 Aligned_cols=265 Identities=43% Similarity=0.730 Sum_probs=246.0
Q ss_pred cchHHHHHHHHhhhhHHHHHHhhcCCCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcCCHH
Q 022740 21 MGDDYLQLFVDETTLYNRIVLANLLPSKWWDPLPHVLQTWLRNYIAGTLLYLVSGLLWCFYVYYLKRNVYVPKDDIPTRK 100 (293)
Q Consensus 21 ~~~~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~l~~~v~~~l~Yf~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 100 (293)
.+.+|++.+.++++.+|+.|.+..+|.++|+.+++++++|+++++++.++|+..+.+++++++..+-....|+.+.|++
T Consensus 2 ~~~d~ll~v~d~tsl~~r~v~~~~lp~nl~~~~~~~ls~~~~~~~~g~ily~~~~~ls~~fVf~~al~~~~~~~~~~~r- 80 (312)
T KOG0872|consen 2 NEMDYLLRVADETSLDNRLVYSATLPANLDEIFRQFLSLWLRVYLGGDILYFFSASLSYFFVFDKALFVHPPFLKNPTR- 80 (312)
T ss_pred chHHHHHHHhhhhccchHHHHhhcCCcchhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccccccCcHH-
Confidence 3578999999999999999999999999999999999999999999999999999999888876655566677888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCC--CccHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHh
Q 022740 101 AMLLQIFVAMKAMPWYVGLPTVSEYMIENGWTKCFARIS--DIGWFAYLVYLVIYLVLVEFGIYWMHRELHDIKFLYKHL 178 (293)
Q Consensus 101 ~~~~~i~~~l~~~~i~~~~~~~~~~~~~~G~~~~y~~~~--~~~~~~~~~~~~~~~l~~D~~~Yw~HR~lH~~~~lyk~~ 178 (293)
|+++|++.++.++|+++++++....+.++||+++|.+++ +.||...+..+++++++.||.+||.||.+| .+.+||+.
T Consensus 81 ~~~~ei~~av~A~pw~sll~~~~~~m~i~gyskl~d~i~~~~~gw~~~~~~i~~flfF~Df~iYw~HR~lH-~~~vy~~L 159 (312)
T KOG0872|consen 81 QMLMEIKTAVQALPWMSLLTVPWFLMEIRGYSKLYDNIGILEYGWFLLFVSIFLFLFFTDFGIYWAHRELH-HRGVYKRL 159 (312)
T ss_pred HHHHHHHHHHHhcchHHHHhHHHHHHHHhhhHHhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHhhh
Confidence 999999999999999999988877777899999998887 889999999999999999999999999999 68999999
Q ss_pred hhhcccCcCCCCCCcchhcccchHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHchhccCCC-ccccccchhhh
Q 022740 179 HATHHIYNKQNTLSPFAGLAFHPLDGILQALPHVIALFIVPTHFTTHLGLLFLEAIWTTNIHDCIHGK-LWPWMGAGYHT 257 (293)
Q Consensus 179 H~~HH~~~~p~~~sp~a~~~~hP~E~ll~~~~~~l~~~l~p~h~~~~~~~~~~~~~~~~~~H~~~~~~-~~p~~~~~~H~ 257 (293)
||.||+++.+ ||+|+.++||+|+++|++|..+.++++|+|..++++...+.++|+.++|+|..+. .+|++||++|+
T Consensus 160 H~~HH~~~~~---tpfAslafhpidg~lqaip~~I~~Fi~Plh~~t~L~l~~f~~iwt~~IHd~~~~~l~~~ingaahHt 236 (312)
T KOG0872|consen 160 HKPHHIWNIC---TPFASLAFHPIDGFLQAIPYHIYPFIFPLHKVTYLSLFTFVNIWTISIHDGIYGSLNPPINGAAHHT 236 (312)
T ss_pred cchhhhhhcc---CchhhhhcCcchhHhhhchhHheeeeecchHHHHHHHHHHHHhHheeeeccccccccCccccccccc
Confidence 9999999874 7999999999999999999999999999999999999999999999999997665 56789999999
Q ss_pred chhcCCCcCccccchhhhhhcCCCCCCCCCccC
Q 022740 258 IHHTTYRHNYGHYTIWMDWMLGTLCDPADDDWG 290 (293)
Q Consensus 258 ~HH~~~~~NYG~~~~~WD~lfGT~~~~~~~~~~ 290 (293)
+||.++++|||++|++|||+|||.+.|+++..+
T Consensus 237 vHH~~f~~NYG~~tilwDrmfgSfr~p~~~~~d 269 (312)
T KOG0872|consen 237 VHHTYFDYNYGQYTILWDRMFGSFRAPDHEDFD 269 (312)
T ss_pred eeeeeEecCCCcEEEeHHhccCcccCccccccc
Confidence 999999999999999999999999999887655
No 2
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-37 Score=281.03 Aligned_cols=221 Identities=25% Similarity=0.342 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-H---HHhhccccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-hCcccc
Q 022740 61 LRNYIAGTLLYLVSGLLWCFY-V---YYLKRNVYVPKDDIPTRKAMLLQIFVAMKAMPWYVGLPTVSEY-MIE-NGWTKC 134 (293)
Q Consensus 61 l~~~v~~~l~Yf~~~~~~~~~-~---~~~~~~~~~~~~~~p~~~~~~~~i~~~l~~~~i~~~~~~~~~~-~~~-~G~~~~ 134 (293)
+...+..+++|++.++++.++ . .-..|++|+|++|.|+.+++++|++.++.|..+..+..+...+ ..+ .|-.
T Consensus 32 ~~~~~~~~~~y~l~~lpf~~iD~t~~~~~~~rYKIQp~k~~s~~~~~kc~k~vl~n~~~v~~p~~~~~y~~~~~~~~~-- 109 (283)
T KOG0873|consen 32 GGPFIVHELVYWLFCLPFIFIDVTNRPPFLRRYKIQPKKNPSLSKQLKCLKVVLLNHFLVVLPLTLVSYPFVEWFGLP-- 109 (283)
T ss_pred chhHHHHHHHHHHhcchheEeecccCcchhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHhCCC--
Confidence 334678889999998886442 1 1123678999999999999999999999999887653333222 222 2221
Q ss_pred cccCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHhhhhcccCcCCCCCCcchhcccchHHHHHHHhHHHHH
Q 022740 135 FARISDIGWFAYLVYLVIYLVLVEFGIYWMHRELHDIKFLYKHLHATHHIYNKQNTLSPFAGLAFHPLDGILQALPHVIA 214 (293)
Q Consensus 135 y~~~~~~~~~~~~~~~~~~~l~~D~~~Yw~HR~lH~~~~lyk~~H~~HH~~~~p~~~sp~a~~~~hP~E~ll~~~~~~l~ 214 (293)
.+.+-+++.+++.++++|+++.|+++||.||++| .|++||++||+||++++|.+ .++.+.||+|.++.+++..+.
T Consensus 110 -~~~plPt~~~~l~~l~i~~liEd~~fY~~HRL~H-~~~~Yk~iHKvHHe~taPf~---~sa~YaHp~E~~~lg~~~~~~ 184 (283)
T KOG0873|consen 110 -SGAPLPSWKEMLAQLVVFFLIEDIGFYWSHRLFH-HKWLYKYIHKVHHEYTAPFG---LSAEYAHPLEHLFLGLGTVMG 184 (283)
T ss_pred -cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHhhhhcccCchh---HhhhhcCHHHHHHcCChhhhh
Confidence 2333347889999999999999999999999999 89999999999999998764 578999999999998887777
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHchhccCC-----Ccccc-ccchhhhchhcCCCcCccccchhhhhhcCCCCCCCCCc
Q 022740 215 LFIVPTHFTTHLGLLFLEAIWTTNIHDCIHG-----KLWPW-MGAGYHTIHHTTYRHNYGHYTIWMDWMLGTLCDPADDD 288 (293)
Q Consensus 215 ~~l~p~h~~~~~~~~~~~~~~~~~~H~~~~~-----~~~p~-~~~~~H~~HH~~~~~NYG~~~~~WD~lfGT~~~~~~~~ 288 (293)
+.+++.|..+.+++++++.+.+...|+||+. +..|+ .|+++||.||..+++||...|++|||++||.+..++.+
T Consensus 185 p~~~~~H~~t~wiw~~l~i~~t~~~HsGY~fPwsl~~~~pfy~ga~~HD~HH~~f~~n~~~~f~~~D~i~GTd~~~~~~k 264 (283)
T KOG0873|consen 185 PALLCGHVITLWIWIALRILETVESHSGYDFPWSLSKLIPFYGGAEHHDYHHLVFIGNFASVFGYLDRIHGTDSTYRALK 264 (283)
T ss_pred hHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCccccccCcccCCCcccchhhhhccccccchhHHHHHHhccCccHhhhh
Confidence 7777779999999999999999999999984 34566 58999999999999999999999999999998765433
No 3
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=100.00 E-value=7.2e-32 Score=248.37 Aligned_cols=190 Identities=24% Similarity=0.457 Sum_probs=149.1
Q ss_pred CcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 022740 95 DIPTRKAMLLQIFVAMK-AMPWYVGLPTVSEYMIENGWTKCFARISDIGWFAYLVYLVIYLVLVEFGIYWMHRELHDIKF 173 (293)
Q Consensus 95 ~~p~~~~~~~~i~~~l~-~~~i~~~~~~~~~~~~~~G~~~~y~~~~~~~~~~~~~~~~~~~l~~D~~~Yw~HR~lH~~~~ 173 (293)
..+.+++...++...+. +++..+...++.......|+.......+ +....++++++++++.|+++||.||+.|+.|.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~D~~~Y~~HR~~H~~~~ 122 (271)
T COG3000 45 AWPTRDWLLDLVLLTLSISVVGLVLLLALILWALLGGYLPGLGVAP--GPLPFALQLLLAFLFLDLGYYWAHRLLHRVPL 122 (271)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC--cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34445555555555554 4555554444444444456654322222 34446889999999999999999999997666
Q ss_pred hhHHhhhhcccCcCCCCCCcchhcccchHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHchhccCCCccc----
Q 022740 174 LYKHLHATHHIYNKQNTLSPFAGLAFHPLDGILQALPHVIALFIVPTHFTTHLGLLFLEAIWTTNIHDCIHGKLWP---- 249 (293)
Q Consensus 174 lyk~~H~~HH~~~~p~~~sp~a~~~~hP~E~ll~~~~~~l~~~l~p~h~~~~~~~~~~~~~~~~~~H~~~~~~~~p---- 249 (293)
+| ++||+||+.+.| +|+++.++||+|.++......+++.++|.+..+..++..+..+++..+|+|++.+ +|
T Consensus 123 ~w-~~H~~HH~~~~~---~~~t~~~~hp~e~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~ 197 (271)
T COG3000 123 LW-AFHKVHHSSEVP---DPLTALRFHPLEILLLAFLGLLPLLLLGLSPVAVALLFIFLLFWAVLIHSNLDLP-LPLGWL 197 (271)
T ss_pred HH-HHHHhhcCcccC---CchhhhhcChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCcccc-CCcccc
Confidence 66 699999999875 6899999999999999988889999999999999999999999999999998742 22
Q ss_pred ---cccchhhhchhcCC--CcCccccchhhhhhcCCCCCCCCCccCC
Q 022740 250 ---WMGAGYHTIHHTTY--RHNYGHYTIWMDWMLGTLCDPADDDWGK 291 (293)
Q Consensus 250 ---~~~~~~H~~HH~~~--~~NYG~~~~~WD~lfGT~~~~~~~~~~~ 291 (293)
+++|++|++||+++ ++|||..+++|||+|||+..|+++..++
T Consensus 198 ~~v~~~p~~H~lHH~~~~~~~Nyg~~~~~WDrlFGT~~~~~~~~~~~ 244 (271)
T COG3000 198 RYVFNTPRHHRLHHSKDPYDKNYGVTLTFWDRLFGTYHPPDEREPDK 244 (271)
T ss_pred eeeecCchHHHHhccCCCCCCcchhhhHHHHHHcccCCCCcccCccc
Confidence 47899999999988 4999999999999999999987775555
No 4
>PLN02869 fatty aldehyde decarbonylase
Probab=99.94 E-value=1.5e-26 Score=228.10 Aligned_cols=141 Identities=27% Similarity=0.515 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhhHHhhhhcccCcCCCCCCcchhcccchH-HHHHHHhHHHHHHH----hcch
Q 022740 146 YLVYLVIYLVLVEFGIYWMHRELHDIKFLYKHLHATHHIYNKQNTLSPFAGLAFHPL-DGILQALPHVIALF----IVPT 220 (293)
Q Consensus 146 ~~~~~~~~~l~~D~~~Yw~HR~lH~~~~lyk~~H~~HH~~~~p~~~sp~a~~~~hP~-E~ll~~~~~~l~~~----l~p~ 220 (293)
.+..+++.....|+++||+||++| .+++|+++|++||++..| +|+++. .||+ |.+...+...+|.+ ..+.
T Consensus 127 ~l~~~Llhv~~~Df~fYW~HRllH-~~~LYwr~HkvHHss~~~---~P~Ts~-~HP~~E~L~y~ll~~IPLllli~~g~~ 201 (620)
T PLN02869 127 VLITILLHMGPVEFLYYWLHRALH-HHYLYSRYHSHHHSSIVT---EPITSV-IHPFAEHIAYFLLFAIPLLTTIFTGTA 201 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHhhccCCCCC---Cchhhh-cCcHHHHHHHHHHHHHHHHHHhhcccc
Confidence 356677888889999999999999 589999999999999764 688876 7986 54544333333332 2356
Q ss_pred hHHHHHHHHHHHHHHHHHchhccCC-C-----ccc-----cccchhhhchhcCCCcCccccchhhhhhcCCCCCCCCCcc
Q 022740 221 HFTTHLGLLFLEAIWTTNIHDCIHG-K-----LWP-----WMGAGYHTIHHTTYRHNYGHYTIWMDWMLGTLCDPADDDW 289 (293)
Q Consensus 221 h~~~~~~~~~~~~~~~~~~H~~~~~-~-----~~p-----~~~~~~H~~HH~~~~~NYG~~~~~WD~lfGT~~~~~~~~~ 289 (293)
|..++.+++++..+.+..+|||++. + ..| ++||++|++||+++++|||.+|++|||+|||+.++.++..
T Consensus 202 hi~t~~~yli~~~f~~~~gHSN~El~P~~~~~~~ppLkyll~TPsfHdlHHs~fd~NYGlfF~~WDrLFGT~d~~s~~l~ 281 (620)
T PLN02869 202 SIAAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPPLKYLMYTPSYHSLHHTQFRTNYSLFMPIYDYIYGTMDKSSDTLY 281 (620)
T ss_pred hHHHHHHHHHHHHHHhcccccCccccccchhccCCcchheecCchHHhHHhccCCcCcccchHHHHhccCCCCCCchhHH
Confidence 7888888888888889999999872 1 122 3799999999999999999999999999999988766555
Q ss_pred CC
Q 022740 290 GK 291 (293)
Q Consensus 290 ~~ 291 (293)
++
T Consensus 282 e~ 283 (620)
T PLN02869 282 EK 283 (620)
T ss_pred HH
Confidence 43
No 5
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=99.91 E-value=3.7e-26 Score=198.89 Aligned_cols=141 Identities=26% Similarity=0.405 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhhHHhhhhcccCcCCCCCCcchhcccchHHHHHH-HhHHHHHHHhcchhHHH
Q 022740 146 YLVYLVIYLVLVEFGIYWMHRELHDIKFLYKHLHATHHIYNKQNTLSPFAGLAFHPLDGILQ-ALPHVIALFIVPTHFTT 224 (293)
Q Consensus 146 ~~~~~~~~~l~~D~~~Yw~HR~lH~~~~lyk~~H~~HH~~~~p~~~sp~a~~~~hP~E~ll~-~~~~~l~~~l~p~h~~~ 224 (293)
...++...+++.|.|+|++||.||-+++|||++|+.||+-..|- ++.+.+.||+|+++. .++..+..++-+++..+
T Consensus 122 ~A~q~f~aflviDtWQYF~HRymH~NK~LYk~iHs~HHrL~VPY---ayGALyNhP~EGllLDT~G~gla~l~sglspr~ 198 (287)
T KOG0874|consen 122 LARQFFAAFLVIDTWQYFLHRYMHMNKFLYKHIHSQHHRLIVPY---AYGALYNHPVEGLLLDTIGGGLAFLLSGLSPRT 198 (287)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhceeEecch---hhhhhhcCcchhhhhhhhchHHHHHHcCCCccc
Confidence 46788999999999999999999999999999999999987653 366899999999985 45555666667888888
Q ss_pred HHHHHHHHHHHHHHchhccCCCccc----c-ccchhhhchhcCC--CcCccc-cchhhhhhcCCCCCCCCCcc
Q 022740 225 HLGLLFLEAIWTTNIHDCIHGKLWP----W-MGAGYHTIHHTTY--RHNYGH-YTIWMDWMLGTLCDPADDDW 289 (293)
Q Consensus 225 ~~~~~~~~~~~~~~~H~~~~~~~~p----~-~~~~~H~~HH~~~--~~NYG~-~~~~WD~lfGT~~~~~~~~~ 289 (293)
.++++.+.++-++..|||+-.+.-| | |++.+||+||+.+ ++||++ +|++||+++||+.++..|++
T Consensus 199 aiifFtfaTiKTVDDHCGy~lP~dpfqm~F~NNa~YHDiHHQ~yG~k~NFsQPFFtfWD~ilgTYmp~~~E~~ 271 (287)
T KOG0874|consen 199 AIIFFTFATIKTVDDHCGYWLPGDPFQMFFPNNAAYHDIHHQLYGTKYNFSQPFFTFWDRILGTYMPYSLEKR 271 (287)
T ss_pred eEEEEEeeeeeeeccccccccCCCceeEeccCCchhhhhhhhhhccccccCCcHHHHHHHHHhhcCCchhccc
Confidence 7778888889999999997533223 2 7899999999975 789987 78999999999988754443
No 6
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.76 E-value=2.1e-18 Score=137.43 Aligned_cols=107 Identities=33% Similarity=0.629 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhHHhhhhcccCcCCCCCCcchhcccchHHHHHHHhHHH-HHHHhcchhHHHHHHHH
Q 022740 151 VIYLVLVEFGIYWMHRELHDIKFLYKHLHATHHIYNKQNTLSPFAGLAFHPLDGILQALPHV-IALFIVPTHFTTHLGLL 229 (293)
Q Consensus 151 ~~~~l~~D~~~Yw~HR~lH~~~~lyk~~H~~HH~~~~p~~~sp~a~~~~hP~E~ll~~~~~~-l~~~l~p~h~~~~~~~~ 229 (293)
++++++.|+++||+||++|+.|++| ++|+.||+.++| +|+++.+++|+|.++..++.. ++..+.+.+..+..+..
T Consensus 2 ~~~~l~~d~~~Y~~HRl~H~~~~l~-~~H~~HH~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (114)
T PF04116_consen 2 LLGFLLWDFWEYWMHRLLHKIPFLW-RIHKVHHSPKNP---TPLSAFRFHPLEALLLALLPLLLPLLLLPFHALAFLLGI 77 (114)
T ss_pred eeeHHHHHHHHHHHHHHHhcCchHH-HHHHHHhCCccc---CchHHHHcChHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 4678999999999999999999999 599999987654 689999999999999765544 55567789999999999
Q ss_pred HHHHHHHHHchhccCCCcc-----ccccchhhhchhc
Q 022740 230 FLEAIWTTNIHDCIHGKLW-----PWMGAGYHTIHHT 261 (293)
Q Consensus 230 ~~~~~~~~~~H~~~~~~~~-----p~~~~~~H~~HH~ 261 (293)
++..+++..+|+|+..... .+.++++|++||+
T Consensus 78 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 78 ALFYLWYIFIHSGYHHRFPPRLRYLFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHHHHhhcCccCCCCCcchhHhcCHHHHHhhCc
Confidence 9999999999999832111 1368999999995
No 7
>PLN02434 fatty acid hydroxylase
Probab=99.38 E-value=8.9e-12 Score=112.22 Aligned_cols=134 Identities=20% Similarity=0.227 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hccc--------chhhHHhhhhcccCcCCCCCCcchh--cccchHHHHHHHhHHH-
Q 022740 145 AYLVYLVIYLVLVEFGIYWMHRE-LHDI--------KFLYKHLHATHHIYNKQNTLSPFAG--LAFHPLDGILQALPHV- 212 (293)
Q Consensus 145 ~~~~~~~~~~l~~D~~~Yw~HR~-lH~~--------~~lyk~~H~~HH~~~~p~~~sp~a~--~~~hP~E~ll~~~~~~- 212 (293)
..+..++++++++.+.+|.+||. +| . +..| .+|..||+. | ... ..+.|.-+++.+.+..
T Consensus 82 ~~~~~~~~G~~~wtl~EY~lHRflfH-~~p~~~~~~~~hf-llHg~HH~~--P-----~D~~rLv~PP~~~~~l~~~~~~ 152 (237)
T PLN02434 82 AVVLMVAFGVFIWTLLEYILHRFLFH-IKTKSYWGNTAHY-LLHGCHHKH--P-----MDGLRLVFPPAATAILCVPFWN 152 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcchHHHHHHH-HHHHHhhcC--C-----CCCCCeecCcHHHHHHHHHHHH
Confidence 34666788999999999999997 55 3 2333 489999986 3 333 3477877666555543
Q ss_pred HHHHhcchhHH-HHHHHH----HHHHHHHHHchhccCCCcccc--ccchhhhchhcCC-CcCccccchhhhhhcCCCCCC
Q 022740 213 IALFIVPTHFT-THLGLL----FLEAIWTTNIHDCIHGKLWPW--MGAGYHTIHHTTY-RHNYGHYTIWMDWMLGTLCDP 284 (293)
Q Consensus 213 l~~~l~p~h~~-~~~~~~----~~~~~~~~~~H~~~~~~~~p~--~~~~~H~~HH~~~-~~NYG~~~~~WD~lfGT~~~~ 284 (293)
+..++.|.... +..+-. ++........|.+-. ..++ .--++|..||-+. ++|||....+|||+|||..++
T Consensus 153 l~~~~~~~~~a~~~~~G~l~gYl~Yd~~Hy~lH~~~p--~~~~~r~lkr~H~~HHfk~~~~~fGVTs~~wD~vFGT~~~~ 230 (237)
T PLN02434 153 LIALFATPATAPALFGGGLLGYVMYDCTHYFLHHGQP--STDVLRNLKKYHLNHHFRDQDKGFGITSSLWDRVFGTLPPS 230 (237)
T ss_pred HHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHcCCCCCCCCCcCchHHHHhcCCCCCc
Confidence 23333432221 111111 223333445554311 1112 2368999999765 899999999999999999776
Q ss_pred CCCcc
Q 022740 285 ADDDW 289 (293)
Q Consensus 285 ~~~~~ 289 (293)
++.++
T Consensus 231 ~~~~~ 235 (237)
T PLN02434 231 KAAKK 235 (237)
T ss_pred chhhc
Confidence 65544
No 8
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=98.73 E-value=7.9e-08 Score=84.18 Aligned_cols=134 Identities=23% Similarity=0.306 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccc----------hhhHHhhhhcccCcCCCCCCcchhc--ccchHHHHHHHhH
Q 022740 143 WFAYLVYLVIYLVLVEFGIYWMHRELHDIK----------FLYKHLHATHHIYNKQNTLSPFAGL--AFHPLDGILQALP 210 (293)
Q Consensus 143 ~~~~~~~~~~~~l~~D~~~Yw~HR~lH~~~----------~lyk~~H~~HH~~~~p~~~sp~a~~--~~hP~E~ll~~~~ 210 (293)
.+.+..-+++..+.+.+.+|-+||.+-+.+ .-| .+|..||+. |+... .+.|..+.+...|
T Consensus 80 ~~~~~~~f~~Gvf~WTl~EY~lHRflFH~k~~~~s~~~~t~Hf-l~HGcHHk~-------P~D~~RLVfPP~~~~il~~p 151 (240)
T KOG0539|consen 80 VPVFSGLFVIGVFTWTLIEYTLHRFLFHIKPNPDSYWLITLHF-LIHGCHHKL-------PMDGYRLVFPPTPFAILAAP 151 (240)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHheEEEecCCCCchHHHHHHH-HHhcccccC-------CCCCceEecCCchHHHHHHH
Confidence 333455678889999999999999865566 113 489999994 45554 4899998887777
Q ss_pred HHHHH-HhcchhHHH-HHHHH----HHHHHHHHHchhccCCCcccc--ccchhhhchhcC-CCcCccccchhhhhhcCCC
Q 022740 211 HVIAL-FIVPTHFTT-HLGLL----FLEAIWTTNIHDCIHGKLWPW--MGAGYHTIHHTT-YRHNYGHYTIWMDWMLGTL 281 (293)
Q Consensus 211 ~~l~~-~l~p~h~~~-~~~~~----~~~~~~~~~~H~~~~~~~~p~--~~~~~H~~HH~~-~~~NYG~~~~~WD~lfGT~ 281 (293)
+..+. +++|-.... ..+=. +.........|.+-..+ .|. .--++|--||-+ .+..||....+||++|||.
T Consensus 152 fy~~~~~vl~~~~~~a~faG~l~GYV~YDmtHYyLHhg~p~~-~~~~~~lK~yHl~HHfk~q~~GfGItS~lWD~VFgTl 230 (240)
T KOG0539|consen 152 FYLILSLVLPHPVAPAGFAGGLLGYVCYDMTHYYLHHGSPPK-RPYLKHLKKYHLNHHFKHQDLGFGITSSLWDYVFGTL 230 (240)
T ss_pred HHHHHHHhcCcchhhhhhccchhhhhhhhhhhhhhhcCCCCC-chHHHHHHHHHhhhhhhccccCccccHHHHHHHhccC
Confidence 65444 344333211 11101 22333334455442211 122 235788888865 5899999999999999999
Q ss_pred CCCC
Q 022740 282 CDPA 285 (293)
Q Consensus 282 ~~~~ 285 (293)
-.++
T Consensus 231 ~~~~ 234 (240)
T KOG0539|consen 231 GPLK 234 (240)
T ss_pred CCCc
Confidence 7766
No 9
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.96 E-value=3.9e-05 Score=74.85 Aligned_cols=129 Identities=22% Similarity=0.247 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhHHhhhhcccCcCCCCCCcch-------hcccchHHHHHH-HhHHHHHHHh----cc
Q 022740 152 IYLVLVEFGIYWMHRELHDIKFLYKHLHATHHIYNKQNTLSPFA-------GLAFHPLDGILQ-ALPHVIALFI----VP 219 (293)
Q Consensus 152 ~~~l~~D~~~Yw~HR~lH~~~~lyk~~H~~HH~~~~p~~~sp~a-------~~~~hP~E~ll~-~~~~~l~~~l----~p 219 (293)
...++.|..+=.+|-+.|++++||| .|..||++-.+. +++-+ ..+..|.|+++. .+...+..++ .+
T Consensus 14 ~~~~~~~~~~d~~h~~~h~~~~l~~-~h~~hh~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 91 (406)
T PRK07424 14 GSILWVEIVRDSYHALAHQWNPLYR-LHNWHHRVFRPD-LSVVSEEIYRKAHWYNDVPEALVMLLFGTLPVLLLQQWNVP 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHH-HHHhHHhhcCCc-CCcccHHHHhhhhhhcCCHHHHHHHHHhhHHHHHHhhhccc
Confidence 3444555555557888888889997 999999998764 66522 355789997763 3332222111 11
Q ss_pred hhH------HHHHHHH---HHHHHHHHHchhc-cC-----CCc--cc---cccchhhhchhcCC-CcCccccchhhhhhc
Q 022740 220 THF------TTHLGLL---FLEAIWTTNIHDC-IH-----GKL--WP---WMGAGYHTIHHTTY-RHNYGHYTIWMDWML 278 (293)
Q Consensus 220 ~h~------~~~~~~~---~~~~~~~~~~H~~-~~-----~~~--~p---~~~~~~H~~HH~~~-~~NYG~~~~~WD~lf 278 (293)
-.. ...+.++ +++... ....+. -| +.+ .| +.++.+|-.||-.+ +.-|+..++.-|+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~d~~h~~~~~~~~~~~~~v~~~~h~rh~~~~~~~~~~~~~~~~d~~~ 170 (406)
T PRK07424 92 YGWLAWLGVLYTLTFLFGAIARGLG-LPNADELTDLTHLPGPFETLPSQWFVNRPYHWRHHFDNQNAYYCGTFTLVDKLM 170 (406)
T ss_pred ccchhhhhhHHHHHHHHHHHHHhcc-cccccccccccCCCCcccCCCccCeecCceeEEEEeccccceeeeeEEEeehhc
Confidence 111 1111222 122111 112211 11 111 11 57889999999877 477899999999999
Q ss_pred CCCCC
Q 022740 279 GTLCD 283 (293)
Q Consensus 279 GT~~~ 283 (293)
||...
T Consensus 171 ~ta~s 175 (406)
T PRK07424 171 GTALS 175 (406)
T ss_pred CcccC
Confidence 99864
No 10
>PLN02601 beta-carotene hydroxylase
Probab=97.89 E-value=0.00046 Score=63.00 Aligned_cols=122 Identities=24% Similarity=0.320 Sum_probs=69.2
Q ss_pred CccHHHHHHH---HHHHHHHHHHHHHHHHhh-hcccchhhHHhhhhcccCcCCCCCCcchhcccchHHHHHHHhHHHHHH
Q 022740 140 DIGWFAYLVY---LVIYLVLVEFGIYWMHRE-LHDIKFLYKHLHATHHIYNKQNTLSPFAGLAFHPLDGILQALPHVIAL 215 (293)
Q Consensus 140 ~~~~~~~~~~---~~~~~l~~D~~~Yw~HR~-lH~~~~lyk~~H~~HH~~~~p~~~sp~a~~~~hP~E~ll~~~~~~l~~ 215 (293)
+.++.+++.. ++..++..|++-+|.||. +| .++|. +|+-||+..+ .+|- .+-+=++++++| .+.+
T Consensus 127 ~~p~~em~~~~al~lgtfvgMEf~Aw~aHKYvMH--G~LW~-lH~sHH~Pr~----g~FE---~NDlFaVifAvp-AIaL 195 (303)
T PLN02601 127 EVSMLEMFGTFALSVGAAVGMEFWARWAHRALWH--DSLWN-MHESHHKPRE----GAFE---LNDVFAIVNAVP-AIGL 195 (303)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchh-hhhhcCCCCC----CCcc---cccchhhhhHHH-HHHH
Confidence 3455544433 355677889999999996 77 58996 9999998543 3443 222333445544 2222
Q ss_pred Hhcch-----h--HHH-HHHHHHHHHHHHHHchhccCCCcccc----------ccchhhhchhc-CC-CcCccccch
Q 022740 216 FIVPT-----H--FTT-HLGLLFLEAIWTTNIHDCIHGKLWPW----------MGAGYHTIHHT-TY-RHNYGHYTI 272 (293)
Q Consensus 216 ~l~p~-----h--~~~-~~~~~~~~~~~~~~~H~~~~~~~~p~----------~~~~~H~~HH~-~~-~~NYG~~~~ 272 (293)
+.++. - .+. .-+=+.+..+.-..+||++-...+|+ --..-|++||+ ++ ..+||..+.
T Consensus 196 ~~~G~~~~g~~p~~~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~~Y~rrl~~AHklHHa~Ke~Gv~FGfll~ 272 (303)
T PLN02601 196 LYYGFFNKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRKVAAAHQLHHTDKFKGVPYGLFLG 272 (303)
T ss_pred HHHhhccccccHHHHHHHHHhHHHHHHHHHHHhhhhhccccccCCCCCCHHHHHHHHHHHhhccCCcCCccceEEec
Confidence 22222 1 110 01112344444567888864333332 12588999997 33 578998754
No 11
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=86.45 E-value=1.5 Score=38.16 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=26.9
Q ss_pred cccchhhhchhcC-CCcCccccchhhhhhcCC
Q 022740 250 WMGAGYHTIHHTT-YRHNYGHYTIWMDWMLGT 280 (293)
Q Consensus 250 ~~~~~~H~~HH~~-~~~NYG~~~~~WD~lfGT 280 (293)
+.++++|..||.. ++.||....++|+.+...
T Consensus 124 llsr~~H~~HH~aPh~~~YCI~tGw~N~~Ld~ 155 (178)
T PF10520_consen 124 LLSRKHHRIHHVAPHDTNYCITTGWLNPPLDK 155 (178)
T ss_pred ccCchhhhccccCcccCCeEeecccchHHHHH
Confidence 4689999999998 699999999999987643
No 12
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=77.33 E-value=5.5 Score=36.44 Aligned_cols=129 Identities=15% Similarity=0.185 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cchhhHHh--hhhcccCcCCCCCCcchhcccchHHHHHHH-hHH---
Q 022740 143 WFAYLVYLVIYLVLVEFGIYWMHRELHD-----IKFLYKHL--HATHHIYNKQNTLSPFAGLAFHPLDGILQA-LPH--- 211 (293)
Q Consensus 143 ~~~~~~~~~~~~l~~D~~~Yw~HR~lH~-----~~~lyk~~--H~~HH~~~~p~~~sp~a~~~~hP~E~ll~~-~~~--- 211 (293)
|...++......+..|+..=.+|...=. .|.+-|.+ =+-||.. |++-.+-.-+|..... ..+
T Consensus 106 ~~~~~La~~aG~i~AD~~SGl~HWaaD~~Gsv~tP~vG~~f~rfreHH~d-------P~tITr~~f~~~~~ll~~a~~f~ 178 (293)
T KOG3011|consen 106 WLEPALAAYAGYITADLGSGVYHWAADNYGSVSTPWVGRQFERFQEHHKD-------PWTITRRQFANNLHLLARAYTFI 178 (293)
T ss_pred hHHHHHHHHHHHHHHhhhcceeEeeccccCccccchhHHHHHHHHhccCC-------cceeeHHHHhhhhHHHHHhheeE
Confidence 4445667777888899988888887553 23333222 4568885 3443343334432110 000
Q ss_pred HHHH-Hh---cchhHHH--HHHHHHHHHHHHHHchhccCCCcc--------ccccchhhhchhcCC-CcCccccchhhhh
Q 022740 212 VIAL-FI---VPTHFTT--HLGLLFLEAIWTTNIHDCIHGKLW--------PWMGAGYHTIHHTTY-RHNYGHYTIWMDW 276 (293)
Q Consensus 212 ~l~~-~l---~p~h~~~--~~~~~~~~~~~~~~~H~~~~~~~~--------p~~~~~~H~~HH~~~-~~NYG~~~~~WD~ 276 (293)
+.++ .+ .+.|... +.++..+.+-...-.|.-..-+.| .+...++|..||..+ ++||....++|.+
T Consensus 179 v~~~d~~~q~~~~h~fV~~~~i~v~~tnQiHkWsHTy~gLP~wVv~LQd~hlilpRkhH~iHH~aPh~~yyCI~tGw~N~ 258 (293)
T KOG3011|consen 179 VLPLDLAFQDPVFHGFVFLFAICVLFTNQIHKWSHTYSGLPPWVVLLQDMHLILPRKHHRIHHVAPHNTYYCIVSGWWNW 258 (293)
T ss_pred ecCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHhhcceecccccccccccCccccceEEeechhhc
Confidence 0000 00 1222221 122233444444445532111111 134678999999875 8999999999987
Q ss_pred hc
Q 022740 277 ML 278 (293)
Q Consensus 277 lf 278 (293)
..
T Consensus 259 ~L 260 (293)
T KOG3011|consen 259 VL 260 (293)
T ss_pred hH
Confidence 53
No 13
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=67.39 E-value=80 Score=27.42 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=14.3
Q ss_pred cchhhHHhhhhcccCcCC
Q 022740 171 IKFLYKHLHATHHIYNKQ 188 (293)
Q Consensus 171 ~~~lyk~~H~~HH~~~~p 188 (293)
.+.-|...|+.||++.+.
T Consensus 53 s~~~W~~~HR~HH~~sDt 70 (178)
T cd03505 53 SPLWWVADHRLHHRYSDT 70 (178)
T ss_pred CHHHHHHHHHHhhcccCC
Confidence 566678899999998763
No 14
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=61.59 E-value=63 Score=23.88 Aligned_cols=26 Identities=15% Similarity=0.543 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022740 55 HVLQTWLRNYIAGTLLYLVSGLLWCF 80 (293)
Q Consensus 55 ~~~~~~l~~~v~~~l~Yf~~~~~~~~ 80 (293)
+.++.++-..+...+.-.+++++|..
T Consensus 4 ~if~lYlqgL~ls~i~V~~~~~~wi~ 29 (72)
T PF13268_consen 4 EIFSLYLQGLLLSSILVLLVSGIWIL 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666677777643
No 15
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=48.37 E-value=25 Score=33.37 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=14.7
Q ss_pred hhHHhhhhcccCcCCCCCCcch
Q 022740 174 LYKHLHATHHIYNKQNTLSPFA 195 (293)
Q Consensus 174 lyk~~H~~HH~~~~p~~~sp~a 195 (293)
=|-+-|+.||++.+.. -.|.+
T Consensus 120 ~WvrdHR~HHk~tdTD-~DPhn 140 (321)
T KOG1600|consen 120 DWVRDHRVHHKFTDTD-ADPHN 140 (321)
T ss_pred HHHhhhhhhccccccC-CCCCC
Confidence 3567899999998743 35555
No 16
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=44.51 E-value=1.2e+02 Score=26.34 Aligned_cols=46 Identities=20% Similarity=0.438 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhcccch----------hhHHhhhhcccCcC
Q 022740 142 GWFAYLVYLVIYLVLVEFGIYWMHRELHDIKF----------LYKHLHATHHIYNK 187 (293)
Q Consensus 142 ~~~~~~~~~~~~~l~~D~~~Yw~HR~lH~~~~----------lyk~~H~~HH~~~~ 187 (293)
++-.++..+.++..+.+-..-|.|..--..++ +=|.-|+.||+.+.
T Consensus 83 ~~~~f~~~~~~~v~~tnq~HkWsH~~~~~P~~V~~LQ~~gillsr~~H~~HH~aPh 138 (178)
T PF10520_consen 83 GWHCFLFSFAFFVAFTNQFHKWSHTYKSLPPWVRFLQDAGILLSRKHHRIHHVAPH 138 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHCCcccCchhhhccccCcc
Confidence 44445556666666666655555552221111 22568999999643
No 17
>PLN02434 fatty acid hydroxylase
Probab=35.08 E-value=59 Score=29.63 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc---hhhHHhhhhcccCc
Q 022740 146 YLVYLVIYLVLVEFGIYWMHRELHDIK---FLYKHLHATHHIYN 186 (293)
Q Consensus 146 ~~~~~~~~~l~~D~~~Yw~HR~lH~~~---~lyk~~H~~HH~~~ 186 (293)
+....++..++.|...|..|...-+.+ .+ |+-|..||--+
T Consensus 166 ~~~G~l~gYl~Yd~~Hy~lH~~~p~~~~~r~l-kr~H~~HHfk~ 208 (237)
T PLN02434 166 LFGGGLLGYVMYDCTHYFLHHGQPSTDVLRNL-KKYHLNHHFRD 208 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH-HHHHHHHcCCC
Confidence 456677888999999999997532222 24 56999999754
No 18
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=32.36 E-value=4.5e+02 Score=25.08 Aligned_cols=50 Identities=16% Similarity=0.353 Sum_probs=26.6
Q ss_pred HHHHhhccc--cCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q 022740 81 YVYYLKRNV--YVPKDDIPTRKAMLLQIFVAMKAMPWYVGLPTVSEYMIENGWTKC 134 (293)
Q Consensus 81 ~~~~~~~~~--~~~~~~~p~~~~~~~~i~~~l~~~~i~~~~~~~~~~~~~~G~~~~ 134 (293)
+.+..++++ +-|...+|- ..+++..++-++.. +.+...-+++.|||+.+.
T Consensus 179 ~~~~iq~~y~~~~p~g~~pv---~~nDv~fslHa~lm-t~Iti~Qc~~yeR~~q~v 230 (372)
T KOG3145|consen 179 YCPKIQNQYDTSYPLGVPPV---TLNDVVFSLHAVLM-TVITILQCFFYERGWQRV 230 (372)
T ss_pred hcHHhccceeccCCCCCCcc---chhhhhhhHHHHHH-HHHHHHHHHhhhhccccc
Confidence 445555665 444444441 23445555555432 333345567789999764
No 19
>PF09980 DUF2214: Predicted membrane protein (DUF2214); InterPro: IPR018706 This family has no known function.
Probab=27.86 E-value=3.7e+02 Score=22.69 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=24.3
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 022740 95 DIPTRKAMLLQIFVAMKAMPWYVGLPTVSEYMIENGW 131 (293)
Q Consensus 95 ~~p~~~~~~~~i~~~l~~~~i~~~~~~~~~~~~~~G~ 131 (293)
-.|+.++.++-.+.......++.++|.+.. +..||.
T Consensus 113 p~~~~~~~~r~~~~v~~el~l~~~ipl~A~-~MARGv 148 (150)
T PF09980_consen 113 PVPSPAEVRRLRRIVMIELHLLALIPLLAA-LMARGV 148 (150)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccc
Confidence 345778888887777777777777776542 345665
No 20
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=25.19 E-value=1.7e+02 Score=19.99 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=17.8
Q ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHH
Q 022740 92 PKDDIPTRKAMLLQIFVAMKAMPWYVG 118 (293)
Q Consensus 92 ~~~~~p~~~~~~~~i~~~l~~~~i~~~ 118 (293)
++-.+|+++|.++....++....+.++
T Consensus 13 kkV~WPt~~e~~~~t~~Vi~~~~~~~~ 39 (55)
T TIGR00964 13 KKVVWPSRKELITYTIVVIVFVIFFSL 39 (55)
T ss_pred hcCcCcCHHHHHhHHHHHHHHHHHHHH
Confidence 455789999988877666554444433
No 21
>PLN02220 delta-9 acyl-lipid desaturase
Probab=23.62 E-value=3.1e+02 Score=25.85 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=14.1
Q ss_pred ccchhhhchhcCC-CcCccc
Q 022740 251 MGAGYHTIHHTTY-RHNYGH 269 (293)
Q Consensus 251 ~~~~~H~~HH~~~-~~NYG~ 269 (293)
.|-..|+-||..+ +.+.|.
T Consensus 241 ~GEgwHNnHHafP~sar~G~ 260 (299)
T PLN02220 241 MGESWHNNHHAFESSARQGL 260 (299)
T ss_pred ccccccccccCCccchhhCC
Confidence 4778999999986 445553
No 22
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.34 E-value=1.3e+02 Score=24.60 Aligned_cols=11 Identities=18% Similarity=0.042 Sum_probs=0.8
Q ss_pred ccccCCCCCcC
Q 022740 87 RNVYVPKDDIP 97 (293)
Q Consensus 87 ~~~~~~~~~~p 97 (293)
++|+.+.+..|
T Consensus 91 ~~Kk~~~~~~p 101 (122)
T PF01102_consen 91 LRKKSSSDVQP 101 (122)
T ss_dssp HS---------
T ss_pred HhccCCCCCCC
Confidence 34444444444
No 23
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=21.64 E-value=3.5e+02 Score=20.12 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022740 59 TWLRNYIAGTLLYLVSGLLWCF 80 (293)
Q Consensus 59 ~~l~~~v~~~l~Yf~~~~~~~~ 80 (293)
..+...++..++..++.|++.+
T Consensus 17 ~~iv~~~al~~l~~~isGl~l~ 38 (88)
T PF13703_consen 17 RWIVGILALLLLLLLISGLYLW 38 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555666666666666543
No 24
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=20.08 E-value=2.9e+02 Score=20.23 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=18.3
Q ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHH
Q 022740 92 PKDDIPTRKAMLLQIFVAMKAMPWYVG 118 (293)
Q Consensus 92 ~~~~~p~~~~~~~~i~~~l~~~~i~~~ 118 (293)
.+-.+|+++|.++....++....++++
T Consensus 32 ~KV~WPsrke~~~~t~~Vl~~v~~~s~ 58 (73)
T COG0690 32 KKVVWPTRKELIRSTLIVLVVVAFFSL 58 (73)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344789999988877776655544443
Done!