Query 022740
Match_columns 293
No_of_seqs 315 out of 1501
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:21:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwa_A Receptor tyrosine-prote 28.6 1.2E+02 0.004 19.4 4.7 17 61-77 14-30 (44)
2 2zjs_E Preprotein translocase 14.9 1.7E+02 0.0057 19.5 3.5 29 89-117 14-42 (60)
3 2klu_A T-cell surface glycopro 13.7 3.2E+02 0.011 19.0 4.6 30 66-96 15-44 (70)
4 2ks1_B Epidermal growth factor 13.4 2.1E+02 0.0071 18.1 3.4 13 65-77 18-30 (44)
5 2l2t_A Receptor tyrosine-prote 13.1 2.1E+02 0.0071 18.2 3.3 13 65-77 17-29 (44)
6 2oar_A Large-conductance mecha 12.8 2.6E+02 0.0089 23.1 4.8 14 100-113 134-147 (174)
7 3t76_A VANU, transcriptional r 12.8 53 0.0018 23.6 0.5 19 252-270 2-20 (88)
8 3dl8_C SECE; RECA-type ATPase 11.5 1.8E+02 0.006 19.8 2.9 27 91-117 15-41 (65)
9 2ww9_B Protein transport prote 10.5 4.2E+02 0.014 18.9 4.7 28 94-121 39-66 (80)
10 3mp7_B Preprotein translocase 10.4 3.2E+02 0.011 18.4 3.9 27 94-120 22-48 (61)
No 1
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=28.58 E-value=1.2e+02 Score=19.42 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022740 61 LRNYIAGTLLYLVSGLL 77 (293)
Q Consensus 61 l~~~v~~~l~Yf~~~~~ 77 (293)
+..-+.+.++.+++++.
T Consensus 14 Ia~~vVGvll~vi~~l~ 30 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVV 30 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33334445555555554
No 2
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=14.89 E-value=1.7e+02 Score=19.49 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=18.6
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHHHHHHH
Q 022740 89 VYVPKDDIPTRKAMLLQIFVAMKAMPWYV 117 (293)
Q Consensus 89 ~~~~~~~~p~~~~~~~~i~~~l~~~~i~~ 117 (293)
...++=.+|+++|..+....++....+.+
T Consensus 14 ~ElkKV~WPtr~e~~~~t~vViv~v~i~~ 42 (60)
T 2zjs_E 14 AELARVTWPTREQVVEGTQAILLFTLAFM 42 (60)
T ss_dssp CCCCCCCCSCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHhhccCcCHHHHHHHHHHHHHHHHHHH
Confidence 33446688999888877666655444433
No 3
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=13.71 E-value=3.2e+02 Score=19.01 Aligned_cols=30 Identities=13% Similarity=0.015 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q 022740 66 AGTLLYLVSGLLWCFYVYYLKRNVYVPKDDI 96 (293)
Q Consensus 66 ~~~l~Yf~~~~~~~~~~~~~~~~~~~~~~~~ 96 (293)
++.+..++++++. ++...+-+.+..+.++.
T Consensus 15 Gg~~~lll~~glc-I~ccvkcrhRrrqAeRM 44 (70)
T 2klu_A 15 GGVAGLLLFIGLG-IFFSVRSRHRRRQAERM 44 (70)
T ss_dssp HHHHHHHHHHHHH-HHHHHHSSCCSSSCTTS
T ss_pred hHHHHHHHHHHHH-HHHhhHHHHHHHHHHHH
Confidence 3333333444442 23333334444444443
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=13.44 E-value=2.1e+02 Score=18.13 Aligned_cols=13 Identities=38% Similarity=0.445 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 022740 65 IAGTLLYLVSGLL 77 (293)
Q Consensus 65 v~~~l~Yf~~~~~ 77 (293)
+++.++..++++.
T Consensus 18 VgGv~~~~ii~~~ 30 (44)
T 2ks1_B 18 VGALLLLLVVALG 30 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444444
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=13.12 E-value=2.1e+02 Score=18.19 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 022740 65 IAGTLLYLVSGLL 77 (293)
Q Consensus 65 v~~~l~Yf~~~~~ 77 (293)
+++.++..++++.
T Consensus 17 VgGv~~v~ii~~~ 29 (44)
T 2l2t_A 17 IGGLFILVIVGLT 29 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4445555555544
No 6
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=12.82 E-value=2.6e+02 Score=23.09 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHH
Q 022740 100 KAMLLQIFVAMKAM 113 (293)
Q Consensus 100 ~~~~~~i~~~l~~~ 113 (293)
.+.+.||.+.+...
T Consensus 134 ~~LL~EIRDlLk~~ 147 (174)
T 2oar_A 134 VVLLTEIRDLLAQT 147 (174)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 35788999888653
No 7
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=12.79 E-value=53 Score=23.65 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=4.9
Q ss_pred cchhhhchhcCCCcCcccc
Q 022740 252 GAGYHTIHHTTYRHNYGHY 270 (293)
Q Consensus 252 ~~~~H~~HH~~~~~NYG~~ 270 (293)
|..+|.-||..+..|++.-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (88)
T 3t76_A 2 GSSHHHHHHSSGRENLYFQ 20 (88)
T ss_dssp ------------CCCCSCC
T ss_pred CccccccccCCCccchhhc
Confidence 5678888998888888753
No 8
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=11.47 E-value=1.8e+02 Score=19.76 Aligned_cols=27 Identities=7% Similarity=-0.028 Sum_probs=7.4
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHH
Q 022740 91 VPKDDIPTRKAMLLQIFVAMKAMPWYV 117 (293)
Q Consensus 91 ~~~~~~p~~~~~~~~i~~~l~~~~i~~ 117 (293)
.++=.+|+++|..+....++....+.+
T Consensus 15 lkKV~WPtr~e~~~~T~vViv~v~i~~ 41 (65)
T 3dl8_C 15 LKRVVWPSRELVVKATISVIIFSLAIG 41 (65)
T ss_dssp -------------CHHHHHHHHHHHHH
T ss_pred HhcccCcCHHHHHHHHHHHHHHHHHHH
Confidence 345578998888776665554444433
No 9
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=10.52 E-value=4.2e+02 Score=18.93 Aligned_cols=28 Identities=7% Similarity=-0.247 Sum_probs=20.7
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022740 94 DDIPTRKAMLLQIFVAMKAMPWYVGLPT 121 (293)
Q Consensus 94 ~~~p~~~~~~~~i~~~l~~~~i~~~~~~ 121 (293)
-+.|+++++.+-.+.+..++.+..+++.
T Consensus 39 ~~KPdr~Ef~~iak~t~iG~~imG~IGf 66 (80)
T 2ww9_B 39 CKKPDLKEYTKIVKAVGIGFIAVGIIGY 66 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899998888888888777666543
No 10
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=10.42 E-value=3.2e+02 Score=18.42 Aligned_cols=27 Identities=4% Similarity=-0.159 Sum_probs=19.3
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 022740 94 DDIPTRKAMLLQIFVAMKAMPWYVGLP 120 (293)
Q Consensus 94 ~~~p~~~~~~~~i~~~l~~~~i~~~~~ 120 (293)
-+.|+++++.+-.+.+..++.+..++.
T Consensus 22 ~~KPd~~Ef~~iak~~~iG~~i~G~iG 48 (61)
T 3mp7_B 22 TKKPNWATYKRAAKITGLGIILIGLIG 48 (61)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 355778888887787777776665554
Done!