Query 022740
Match_columns 293
No_of_seqs 315 out of 1501
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 10:21:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022740.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022740hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oara1 f.16.1.1 (A:10-118) Ga 18.3 59 0.0043 23.0 4.0 10 98-107 100-109 (109)
2 d1q90n_ f.23.27.1 (N:) PetN su 17.3 10 0.00074 20.6 -0.4 16 1-16 14-29 (31)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 11.3 55 0.004 22.0 2.0 7 104-110 62-68 (91)
4 d1rh5b_ f.23.28.1 (B:) Preprot 9.0 2.2E+02 0.016 17.5 5.0 29 93-121 14-42 (56)
5 d1v2za_ a.186.1.1 (A:) Circadi 6.2 4.1E+02 0.03 18.2 5.8 41 11-57 3-43 (106)
6 d1r8ja1 a.186.1.1 (A:177-282) 4.6 4.8E+02 0.035 17.7 4.4 39 13-57 2-40 (106)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 4.5 4.8E+02 0.035 17.0 9.9 8 103-110 70-77 (100)
8 d1sxjc1 a.80.1.1 (C:239-333) R 4.2 4.4E+02 0.032 16.7 4.0 36 97-133 1-36 (95)
9 d1lghb_ f.3.1.1 (B:) Light-har 3.4 4.5E+02 0.033 15.0 3.6 22 64-85 18-39 (43)
10 d2e74g1 f.23.26.1 (G:9-35) Pet 3.4 3.5E+02 0.025 13.7 3.5 9 69-77 5-13 (27)
No 1
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=18.30 E-value=59 Score=22.96 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=5.5
Q ss_pred CHHHHHHHHH
Q 022740 98 TRKAMLLQIF 107 (293)
Q Consensus 98 ~~~~~~~~i~ 107 (293)
+..+.++||+
T Consensus 100 ~e~~LL~EIR 109 (109)
T d2oara1 100 TQVVLLTEIR 109 (109)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHhhC
Confidence 3345666664
No 2
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=17.34 E-value=10 Score=20.65 Aligned_cols=16 Identities=44% Similarity=0.501 Sum_probs=12.5
Q ss_pred Cccccchhhhhhhhhc
Q 022740 1 MQTLSLSLSLLFFYRS 16 (293)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (293)
|-|.|.||||...-||
T Consensus 14 ~atfsfslslvvwgrs 29 (31)
T d1q90n_ 14 CVMFSFSLSLVVWGRS 29 (31)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHhheeeEEEEEEecc
Confidence 4577889999887776
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=11.33 E-value=55 Score=22.04 Aligned_cols=7 Identities=14% Similarity=0.097 Sum_probs=3.5
Q ss_pred HHHHHHH
Q 022740 104 LQIFVAM 110 (293)
Q Consensus 104 ~~i~~~l 110 (293)
.|+....
T Consensus 62 lEi~Wti 68 (91)
T d1fftb2 62 VEAVVWT 68 (91)
T ss_dssp HHHHTTH
T ss_pred ehhhHHH
Confidence 4555444
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.97 E-value=2.2e+02 Score=17.46 Aligned_cols=29 Identities=14% Similarity=-0.016 Sum_probs=20.1
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022740 93 KDDIPTRKAMLLQIFVAMKAMPWYVGLPT 121 (293)
Q Consensus 93 ~~~~p~~~~~~~~i~~~l~~~~i~~~~~~ 121 (293)
..+.|+++++.+-.+.+-.++.+..++..
T Consensus 14 ~~~KP~~~Ef~~ia~v~~iG~~i~G~IGf 42 (56)
T d1rh5b_ 14 VLKKPTKDEYLAVAKVTALGISLLGIIGY 42 (56)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899988877777777766665543
No 5
>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal domain {Thermosynechococcus elongatus bp-1 [TaxId: 197221]}
Probab=6.18 E-value=4.1e+02 Score=18.17 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=27.8
Q ss_pred hhhhhcCCCccchHHHHHHHHhhhhHHHHHHhhcCCCccCCchHHHH
Q 022740 11 LFFYRSKSPAMGDDYLQLFVDETTLYNRIVLANLLPSKWWDPLPHVL 57 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~ 57 (293)
-+|+|..+|.--++.++.++ +.|..++| +.+... ++.++-+
T Consensus 3 ~~f~r~l~p~ErqeLL~~Lk---~~YR~IlL-sYFs~d--~~~nq~i 43 (106)
T d1v2za_ 3 AFFFRRMSPADKRKLLDELR---SIYRTIVL-EYFNTD--AKVNERI 43 (106)
T ss_dssp HHHHHHHCCSCCHHHHHHHH---HHHHHHHH-HTTCTT--SCHHHHH
T ss_pred hHHHhcCCHHHHHHHHHHHH---HHHHHHHH-HHhCCc--HHHHHHH
Confidence 47999999998888887755 46888878 434333 3444433
No 6
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]}
Probab=4.64 E-value=4.8e+02 Score=17.73 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=25.0
Q ss_pred hhhcCCCccchHHHHHHHHhhhhHHHHHHhhcCCCccCCchHHHH
Q 022740 13 FYRSKSPAMGDDYLQLFVDETTLYNRIVLANLLPSKWWDPLPHVL 57 (293)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~ 57 (293)
|+|..+|.--++.++.++ +.|..++|+= +... ++.++-+
T Consensus 2 Flr~L~p~ErqeLL~~Lk---~~YR~IlLsY-F~~d--~~~nq~i 40 (106)
T d1r8ja1 2 FLRNLPAYESQKLHQAMQ---TSYREIVLSY-FSPN--SNLNQSI 40 (106)
T ss_dssp STTTSCHHHHHHHHHHHH---HHHHHHHHHH-TSTT--CCHHHHH
T ss_pred ccccCCHHHHHHHHHHHH---HHHHHHHHHH-cCCc--HHHHHHH
Confidence 789999987777777644 4688887743 4333 3444433
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.50 E-value=4.8e+02 Score=16.96 Aligned_cols=8 Identities=25% Similarity=0.235 Sum_probs=4.6
Q ss_pred HHHHHHHH
Q 022740 103 LLQIFVAM 110 (293)
Q Consensus 103 ~~~i~~~l 110 (293)
..|+.+++
T Consensus 70 ~LEiiWTv 77 (100)
T d3dtub2 70 PLEIAWTI 77 (100)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 46666554
No 8
>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.17 E-value=4.4e+02 Score=16.74 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q 022740 97 PTRKAMLLQIFVAMKAMPWYVGLPTVSEYMIENGWTK 133 (293)
Q Consensus 97 p~~~~~~~~i~~~l~~~~i~~~~~~~~~~~~~~G~~~ 133 (293)
|+++++ +++...+.+-.+-.....+-....+.||+.
T Consensus 1 P~P~~I-~~il~~~l~~~f~~a~~~l~~l~~~~G~s~ 36 (95)
T d1sxjc1 1 PRPSDL-KAVLKSILEDDWGTAHYTLNKVRSAKGLAL 36 (95)
T ss_dssp CCHHHH-HHHHHHHHTSCHHHHHHHHHHHHHTTTCCH
T ss_pred CCHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHcCCCH
Confidence 556665 555555544333333333333344567753
No 9
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=3.44 E-value=4.5e+02 Score=15.02 Aligned_cols=22 Identities=5% Similarity=0.122 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 022740 64 YIAGTLLYLVSGLLWCFYVYYL 85 (293)
Q Consensus 64 ~v~~~l~Yf~~~~~~~~~~~~~ 85 (293)
|+.+..+|.+++..-++..+.+
T Consensus 18 ~~~g~~~F~~iAvvAHiLvw~w 39 (43)
T d1lghb_ 18 FKTTFSAFIILAAVAHVLVWVW 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566667777766666654
No 10
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.41 E-value=3.5e+02 Score=13.65 Aligned_cols=9 Identities=33% Similarity=0.512 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 022740 69 LLYLVSGLL 77 (293)
Q Consensus 69 l~Yf~~~~~ 77 (293)
+++..++++
T Consensus 5 li~~tl~gl 13 (27)
T d2e74g1 5 LVFATLGGL 13 (27)
T ss_dssp HHHHHHHHH
T ss_pred ehHHHHHHH
Confidence 344455555
Done!