BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022741
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 49 ISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSD-TATLRKASIWREASRIISEEGFR 107
+ LAGGVA A+SKT AP+ R+ +L QVQ +A + I RI E+GF
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 108 AFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHF----VSGG 163
+FW+GNL + P ++NF + YK++ G + + +F SGG
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLG-------GVDRHKQFWRYFAGNLASGG 120
Query: 164 LAGITAASVTYPLDLVRTRLAAQTNV----IYYRGICHALQTICRDEGIWGLYKGLGATL 219
AG T+ YPLD RTRLAA + G+ + + I + +G+ GLY+G ++
Sbjct: 121 AAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSV 180
Query: 220 LGVGPSIAISFSVYETLR 237
G+ A F VY+T +
Sbjct: 181 QGIIIYRAAYFGVYDTAK 198
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 35/203 (17%)
Query: 51 QLLAGGVAGALSKTCTAPL--ARLTILFQVQGMHSDTATLRKASIWRE-------ASRII 101
L +GG AGA S PL AR + A + K + RE ++I
Sbjct: 115 NLASGGAAGATSLCFVYPLDFARTRL----------AADVGKGAAQREFTGLGNCITKIF 164
Query: 102 SEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVS 161
+G R ++G V++ + Y + F Y+ K +L + + + V ++
Sbjct: 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP---------DPKNVHIIVSWMI 215
Query: 162 GGLAGITAASVTYPLDLVRTRLAAQTNV----IYYRGICHALQTICRDEGIWGLYKGLGA 217
A V+YP D VR R+ Q+ I Y G + I +DEG +KG +
Sbjct: 216 AQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWS 275
Query: 218 TLL-GVGPSIAISFSVYETLRSF 239
+L G+G + + +Y+ ++ F
Sbjct: 276 NVLRGMGGAFVL--VLYDEIKKF 296
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 84/202 (41%), Gaps = 16/202 (7%)
Query: 47 GTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDTATLRKASIWREASRIIS-EEG 105
G S+LLAG GAL+ P + + FQ Q R+ EA + I+ EEG
Sbjct: 103 GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGG---RRYQSTVEAYKTIAREEG 159
Query: 106 FRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLA 165
R WKG +A + Y+ K L + M+ DL HF S A
Sbjct: 160 IRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLL-------KANLMTDDLPCHFTSAFGA 212
Query: 166 GITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPS 225
G + P+D+V+TR + + Y H T+ R EG YKG + L +G
Sbjct: 213 GFCTTVIASPVDVVKTRYM-NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSW 271
Query: 226 IAISFSVYETLR----SFWQSR 243
+ F YE L+ + +QSR
Sbjct: 272 NVVMFVTYEQLKRALMAAYQSR 293
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 157 VHFVSGGLAGITAASVTYPLDLVRTRLAAQTNV---------IYYRGICHALQTICRDEG 207
V F+ G A A +T+PLD + RL Q YRG+ + T+ R EG
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 208 IWGLYKGLGATLLGVGPSIAISFSVYETLRSFW 240
LY GL A L ++ +Y++++ F+
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFY 95
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 96 EASRIISEEGFRAFWKGNLVTI 117
E+ R+ SEEGFR+F+ G+L I
Sbjct: 190 ESFRLXSEEGFRSFYDGSLADI 211
>pdb|3T24|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Opdq
pdb|3T24|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Opdq
pdb|3T24|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Opdq
Length = 401
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 110 WKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDL 155
W NL T H Y ++ + +HY L+H +P+ + Q ++ SD+
Sbjct: 201 WTDNLSTSYH---YGKLDNFYKQHYLGLVHTLPIADKQ--SLKSDI 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,195,703
Number of Sequences: 62578
Number of extensions: 264092
Number of successful extensions: 546
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 7
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)