Query 022741
Match_columns 293
No_of_seqs 164 out of 1711
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 10:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1.3E-45 4.5E-50 319.8 22.6 233 45-283 4-241 (297)
2 2lck_A Mitochondrial uncouplin 100.0 1.4E-45 4.8E-50 320.4 19.7 225 50-283 3-234 (303)
3 2lck_A Mitochondrial uncouplin 100.0 6.4E-43 2.2E-47 303.7 16.9 226 7-242 55-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 1.3E-41 4.4E-46 294.7 19.5 221 8-239 59-296 (297)
5 3tgu_G UQCRQ, mitochondrial ub 32.3 36 0.0012 22.3 2.8 39 207-245 33-71 (81)
6 1y9i_A Low temperature require 29.3 66 0.0023 24.5 4.2 45 224-268 111-160 (178)
7 1pp9_G Ubiquinol-cytochrome C 26.6 80 0.0027 20.6 3.7 39 207-245 33-71 (81)
8 2acm_A Mucin-1; auto-catalytic 19.0 19 0.00063 22.0 -0.5 19 194-212 41-59 (66)
9 2l5r_A Antimicrobial peptide a 15.7 51 0.0017 15.7 0.7 20 200-220 3-22 (26)
10 2khf_A PLNJ; anti-microbial, b 14.9 53 0.0018 15.6 0.7 13 209-221 12-24 (26)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.3e-45 Score=319.81 Aligned_cols=233 Identities=29% Similarity=0.487 Sum_probs=200.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhhcchHHHHHHHHhcCCCC-CccccccccHHHHHHHHHHhhhhhhhhcchhhhhhcccch
Q 022741 45 QIGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHS-DTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPY 123 (293)
Q Consensus 45 ~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~-~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~ 123 (293)
+.+....+++|++||+++.+++||+|+||+|+|++.... ......|++.++++++++++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 346678899999999999999999999999999986422 1224468999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCcccccCCCCchhHHHHHHhhHHHHHhHhhhcccHHHHHHHHHhccC----CcccCcHHHHH
Q 022741 124 SSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN----VIYYRGICHAL 199 (293)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pl~~ik~r~q~~~~----~~~~~~~~~~~ 199 (293)
.+++|.+||.+++.+..... ...+...+....+++|++||++++++++|+|+||+|+|.+.. ...|+++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~---~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVD---RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHhccccC---cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence 99999999999996542111 011112345678999999999999999999999999999843 34689999999
Q ss_pred HHHHHhhChhhcccchhHhhhhhhhhHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhhhhcCChhhHHHHH
Q 022741 200 QTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTAVYRAFDAETEDV 279 (293)
Q Consensus 200 ~~i~~~~G~~g~y~G~~~~~~~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~~P~dvv~tr~ 279 (293)
++|+++||++|||||+.++++|.+|+++++|.+||.+|+.+.+. .+.+.+..+++|+++|+++++++| |+||||+||
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~-P~dvvktr~ 237 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSY-PFDTVRRRM 237 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcC-hHHHHHHHH
Confidence 99999999999999999999999999999999999999976543 244577889999999999999997 999999999
Q ss_pred hhhh
Q 022741 280 GLAL 283 (293)
Q Consensus 280 ~~~~ 283 (293)
|...
T Consensus 238 q~~~ 241 (297)
T 1okc_A 238 MMQS 241 (297)
T ss_dssp HTTT
T ss_pred hhcC
Confidence 9653
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.4e-45 Score=320.44 Aligned_cols=225 Identities=20% Similarity=0.318 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHhcCCCCC----ccccccccHHHHHHHHHHhhhhhhhhcchhhhhhcccchhh
Q 022741 50 SQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSD----TATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSS 125 (293)
Q Consensus 50 ~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~~----~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~ 125 (293)
..+++|++||+++.+++||+|+||+|+|++..... ....+|++.++++++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 36889999999999999999999999999864321 11346889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCCchhHHHHHHhhHHHHHhHhhhcccHHHHHHHHHhccC---CcccCcHHHHHHHH
Q 022741 126 VNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN---VIYYRGICHALQTI 202 (293)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pl~~ik~r~q~~~~---~~~~~~~~~~~~~i 202 (293)
++|.+||.+|+.+.+.. + ..+....+++|++||++++++++|+|+||+|+|.+.. ...|+++++++++|
T Consensus 83 i~f~~ye~~k~~~~~~~------~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i 154 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS------E--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTI 154 (303)
T ss_dssp HTTTHHHHHHHHHSCCC------S--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC------c--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHH
Confidence 99999999999886421 1 2456788999999999999999999999999999853 34789999999999
Q ss_pred HHhhChhhcccchhHhhhhhhhhHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhhhhcCChhhHHHHHhhh
Q 022741 203 CRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTAVYRAFDAETEDVGLA 282 (293)
Q Consensus 203 ~~~~G~~g~y~G~~~~~~~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~~P~dvv~tr~~~~ 282 (293)
+++||++|||||+.++++|.+|+++++|.+||.+|+.+.+....+.+.+..+++|++||++++++++ |+||||+|||..
T Consensus 155 ~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~-P~dvvktrlq~~ 233 (303)
T 2lck_A 155 AREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIAS-PVDVVKTRYMNS 233 (303)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred HHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999876554556678899999999999999997 999999999965
Q ss_pred h
Q 022741 283 L 283 (293)
Q Consensus 283 ~ 283 (293)
.
T Consensus 234 ~ 234 (303)
T 2lck_A 234 A 234 (303)
T ss_dssp C
T ss_pred c
Confidence 3
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6.4e-43 Score=303.65 Aligned_cols=226 Identities=28% Similarity=0.386 Sum_probs=192.3
Q ss_pred hhhhhccccccccccccchhhhHh-------hHHHHHHHHhhhc-CcchhHHHHHHHHHHHHHHHHhhcchHHHHHHHHh
Q 022741 7 VGVVVEGGQRGLSSGNGSVSVDKI-------TLQQQQKQMLQNQ-SQIGTISQLLAGGVAGALSKTCTAPLARLTILFQV 78 (293)
Q Consensus 7 ~~i~~~~G~~glyrG~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~ 78 (293)
..++++||++|||||+.++++..+ ..++..+....+. ...+....+++|++||+++.++++|+|+||+|+|+
T Consensus 55 ~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~ 134 (303)
T 2lck_A 55 LTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQA 134 (303)
T ss_dssp HHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhc
Confidence 378999999999999998877544 2233333333222 34677889999999999999999999999999999
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhhhhhhhcchhhhhhcccchhhHHHHHHHHHHHHHhcCCcccccCCCCchhHHHH
Q 022741 79 QGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVH 158 (293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (293)
+... ....+|++.++++++|+++||++|||||+.+.+++.++..+++|.+||.+++.+.+... ...+....
T Consensus 135 ~~~~--~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~-------~~~~~~~~ 205 (303)
T 2lck_A 135 QARA--GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL-------MTDDLPCH 205 (303)
T ss_dssp SCSC--CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS-------CCSCHHHH
T ss_pred cccc--CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCchHHH
Confidence 8642 12346889999999999999999999999999999999999999999999998764211 12345677
Q ss_pred HHhhHHHHHhHhhhcccHHHHHHHHHhccCCcccCcHHHHHHHHHHhhChhhcccchhHhhhhhhhhHHHHHHHHHHHHH
Q 022741 159 FVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRS 238 (293)
Q Consensus 159 ~~~g~~a~~~~~~~~~Pl~~ik~r~q~~~~~~~~~~~~~~~~~i~~~~G~~g~y~G~~~~~~~~~~~~~~~~~~ye~~~~ 238 (293)
+++|++||++++++++|+|+||+|+|.+.. ..|+++++++++|+++||++|||||+.|+++|.+|..+++|.+||.+|+
T Consensus 206 ~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~ 284 (303)
T 2lck_A 206 FTSAFGAGFCTTVIASPVDVVKTRYMNSAL-GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhccc-cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999853 3699999999999999999999999999999999999999999999998
Q ss_pred HHhh
Q 022741 239 FWQS 242 (293)
Q Consensus 239 ~~~~ 242 (293)
.+.+
T Consensus 285 ~l~~ 288 (303)
T 2lck_A 285 ALMA 288 (303)
T ss_dssp CCCC
T ss_pred HHHH
Confidence 7643
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.3e-41 Score=294.75 Aligned_cols=221 Identities=22% Similarity=0.309 Sum_probs=181.5
Q ss_pred hhhhccccccccccccchhhhHh--------hHHHHHHHHhhhcC---c--chhHHHHHHHHHHHHHHHHhhcchHHHHH
Q 022741 8 GVVVEGGQRGLSSGNGSVSVDKI--------TLQQQQKQMLQNQS---Q--IGTISQLLAGGVAGALSKTCTAPLARLTI 74 (293)
Q Consensus 8 ~i~~~~G~~glyrG~~~~~~~~~--------~~~~~~~~~~~~~~---~--~~~~~~~~~g~~a~~~~~~i~~Pld~ik~ 74 (293)
.++++||++|||||+.++++..+ .++..+........ . .+....+++|++||+++.++++|+|+||+
T Consensus 59 ~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vkt 138 (297)
T 1okc_A 59 RIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFART 138 (297)
T ss_dssp HHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 78899999999999998877544 22333332322211 1 23467899999999999999999999999
Q ss_pred HHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhhcchhhhhhcccchhhHHHHHHHHHHHHHhcCCcccccCCCCchh
Q 022741 75 LFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSD 154 (293)
Q Consensus 75 ~~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (293)
|+|++.... ....+|++.++++++|+++||++|||||+.+.+++.++..+++|.+||.+++.+.+. ...+
T Consensus 139 rlq~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~---------~~~~ 208 (297)
T 1okc_A 139 RLAADVGKG-AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP---------KNVH 208 (297)
T ss_dssp HHHHCCCSS-TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---------GCSC
T ss_pred HHhccccCC-CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC---------CCcc
Confidence 999985321 123468899999999999999999999999999999999999999999999866421 1124
Q ss_pred HHHHHHhhHHHHHhHhhhcccHHHHHHHHHhccC----CcccCcHHHHHHHHHHhhChhhcccchhHhhhhhhhhHHHHH
Q 022741 155 LFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN----VIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISF 230 (293)
Q Consensus 155 ~~~~~~~g~~a~~~~~~~~~Pl~~ik~r~q~~~~----~~~~~~~~~~~~~i~~~~G~~g~y~G~~~~~~~~~~~~~~~~ 230 (293)
....+++|++||++++++++|+|+||+|+|.+.. ...|+++++++++|+++||++|||||+.|+++|. +..+++|
T Consensus 209 ~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f 287 (297)
T 1okc_A 209 IIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVL 287 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeee
Confidence 5677899999999999999999999999998743 2368999999999999999999999999999996 6789999
Q ss_pred HHHHHHHHH
Q 022741 231 SVYETLRSF 239 (293)
Q Consensus 231 ~~ye~~~~~ 239 (293)
.+||.+|+.
T Consensus 288 ~~ye~~k~~ 296 (297)
T 1okc_A 288 VLYDEIKKF 296 (297)
T ss_dssp HHHHTC---
T ss_pred hHHHHHHhh
Confidence 999998875
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=32.34 E-value=36 Score=22.34 Aligned_cols=39 Identities=8% Similarity=0.249 Sum_probs=28.8
Q ss_pred ChhhcccchhHhhhhhhhhHHHHHHHHHHHHHHHhhcCC
Q 022741 207 GIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQ 245 (293)
Q Consensus 207 G~~g~y~G~~~~~~~~~~~~~~~~~~ye~~~~~~~~~~~ 245 (293)
|+...+|-+...++..+|..++.+.+|+..++.......
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~r 71 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKR 71 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 334445556677888889999999999999988765443
No 6
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=29.29 E-value=66 Score=24.53 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCC-----ChhHHHHHHHHHHHHHHhhhh
Q 022741 224 PSIAISFSVYETLRSFWQSRRQND-----SPVLVSLACGSLSGIASSTAV 268 (293)
Q Consensus 224 ~~~~~~~~~ye~~~~~~~~~~~~~-----~~~~~~~~~g~~ag~~~~~~~ 268 (293)
.-..+.|..||..|.+.-+..+++ ..++.++++|.+|++++.++.
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l~~ 160 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAH 160 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 345677888999887655433322 358888999999888775443
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=26.64 E-value=80 Score=20.62 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=29.1
Q ss_pred ChhhcccchhHhhhhhhhhHHHHHHHHHHHHHHHhhcCC
Q 022741 207 GIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQ 245 (293)
Q Consensus 207 G~~g~y~G~~~~~~~~~~~~~~~~~~ye~~~~~~~~~~~ 245 (293)
|+...+|-+.-.++..+|..++.+.+|+..++.......
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~r 71 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKR 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhC
Confidence 344445557777778889999999999999988765443
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=19.03 E-value=19 Score=21.98 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHhhChhhcc
Q 022741 194 GICHALQTICRDEGIWGLY 212 (293)
Q Consensus 194 ~~~~~~~~i~~~~G~~g~y 212 (293)
++.+.+.+||+++++.|++
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 6778889999999988875
No 9
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=15.69 E-value=51 Score=15.69 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=11.8
Q ss_pred HHHHHhhChhhcccchhHhhh
Q 022741 200 QTICRDEGIWGLYKGLGATLL 220 (293)
Q Consensus 200 ~~i~~~~G~~g~y~G~~~~~~ 220 (293)
++|++. |+.++-+|+.++..
T Consensus 3 keifka-glgslvkgiaahva 22 (26)
T 2l5r_A 3 KEIFKA-GLGSLVKGIAAHVA 22 (26)
T ss_dssp HHHHHH-HHHHHHHHHHHHHC
T ss_pred HHHHHH-hHHHHHHHHHHHHh
Confidence 445443 66667777766543
No 10
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=14.91 E-value=53 Score=15.62 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=8.2
Q ss_pred hhcccchhHhhhh
Q 022741 209 WGLYKGLGATLLG 221 (293)
Q Consensus 209 ~g~y~G~~~~~~~ 221 (293)
+|||.|=.-+.+|
T Consensus 12 kgfydgeagrair 24 (26)
T 2khf_A 12 KGFYDGEAGRAIR 24 (26)
T ss_dssp HHHTTTHHHHTTT
T ss_pred hhcccchhhhHhh
Confidence 4788876555544
Done!