Query 022742
Match_columns 293
No_of_seqs 340 out of 1724
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:48:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0122 Translation initiation 100.0 1E-72 2.2E-77 491.2 24.5 265 8-292 2-270 (270)
2 PF12353 eIF3g: Eukaryotic tra 100.0 1E-40 2.2E-45 271.5 13.5 126 31-162 1-127 (128)
3 PLN03134 glycine-rich RNA-bind 99.8 3.2E-18 7E-23 142.7 12.4 85 208-292 31-115 (144)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 7.7E-18 1.7E-22 158.5 15.8 82 211-292 269-350 (352)
5 TIGR01659 sex-lethal sex-letha 99.8 9.5E-18 2.1E-22 158.4 14.1 153 125-291 120-275 (346)
6 TIGR01645 half-pint poly-U bin 99.7 3.9E-17 8.5E-22 162.8 14.9 157 125-292 120-285 (612)
7 KOG0144 RNA-binding protein CU 99.7 4.4E-17 9.6E-22 152.6 8.6 172 104-293 32-208 (510)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.4E-16 5.2E-21 148.4 11.6 83 210-292 2-84 (352)
9 PF00076 RRM_1: RNA recognitio 99.6 1.6E-15 3.4E-20 109.2 10.4 70 214-284 1-70 (70)
10 TIGR01659 sex-lethal sex-letha 99.6 1.3E-15 2.8E-20 144.0 11.4 85 207-291 103-187 (346)
11 TIGR01622 SF-CC1 splicing fact 99.6 3.1E-15 6.8E-20 145.9 13.6 156 126-289 103-264 (457)
12 TIGR01628 PABP-1234 polyadenyl 99.6 4.3E-15 9.3E-20 148.8 12.7 83 209-292 283-365 (562)
13 TIGR01628 PABP-1234 polyadenyl 99.6 5.4E-15 1.2E-19 148.1 11.8 152 124-291 12-167 (562)
14 KOG0121 Nuclear cap-binding pr 99.6 3.8E-15 8.3E-20 119.2 7.0 81 208-288 33-113 (153)
15 PF14259 RRM_6: RNA recognitio 99.6 3.2E-14 7E-19 103.2 10.7 70 214-284 1-70 (70)
16 KOG0148 Apoptosis-promoting RN 99.6 3.6E-14 7.9E-19 126.4 12.6 151 124-291 74-238 (321)
17 KOG0148 Apoptosis-promoting RN 99.6 1.8E-14 3.8E-19 128.3 9.6 82 211-292 62-143 (321)
18 KOG4207 Predicted splicing fac 99.5 1E-14 2.2E-19 125.5 6.6 82 208-289 10-91 (256)
19 TIGR01645 half-pint poly-U bin 99.5 4.2E-14 9E-19 141.3 10.4 81 209-289 105-185 (612)
20 KOG0145 RNA-binding protein EL 99.5 8.3E-14 1.8E-18 123.5 11.0 84 209-292 39-122 (360)
21 PLN03120 nucleic acid binding 99.5 8.3E-14 1.8E-18 125.2 10.5 75 211-289 4-78 (260)
22 KOG0125 Ataxin 2-binding prote 99.5 5.5E-14 1.2E-18 128.1 8.8 82 208-291 93-174 (376)
23 PLN03213 repressor of silencin 99.5 6.4E-14 1.4E-18 133.4 9.2 78 210-291 9-88 (759)
24 KOG0149 Predicted RNA-binding 99.5 4.8E-14 1E-18 123.5 7.1 79 210-289 11-89 (247)
25 KOG0145 RNA-binding protein EL 99.5 8.7E-13 1.9E-17 117.1 15.0 83 210-292 277-359 (360)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.5 2.3E-13 4.9E-18 134.5 11.9 82 209-290 293-374 (509)
27 KOG0107 Alternative splicing f 99.5 1.8E-13 4E-18 115.0 8.4 79 208-291 7-85 (195)
28 KOG0113 U1 small nuclear ribon 99.5 2.3E-13 4.9E-18 122.7 9.4 82 208-289 98-179 (335)
29 smart00362 RRM_2 RNA recogniti 99.5 6E-13 1.3E-17 94.5 9.3 72 213-286 1-72 (72)
30 COG0724 RNA-binding proteins ( 99.4 4.2E-13 9.2E-18 118.4 10.1 79 211-289 115-193 (306)
31 smart00360 RRM RNA recognition 99.4 7.7E-13 1.7E-17 93.5 8.4 71 216-286 1-71 (71)
32 KOG0126 Predicted RNA-binding 99.4 3E-14 6.4E-19 120.4 1.1 80 208-287 32-111 (219)
33 KOG0111 Cyclophilin-type pepti 99.4 1E-13 2.2E-18 120.4 4.3 83 209-291 8-90 (298)
34 TIGR01622 SF-CC1 splicing fact 99.4 7.6E-13 1.7E-17 129.1 11.0 81 209-290 87-167 (457)
35 TIGR01648 hnRNP-R-Q heterogene 99.4 6.3E-13 1.4E-17 132.6 9.8 81 209-290 56-137 (578)
36 PLN03121 nucleic acid binding 99.4 1.2E-12 2.6E-17 116.2 10.4 75 210-288 4-78 (243)
37 KOG0130 RNA-binding protein RB 99.4 3.6E-13 7.8E-18 108.9 6.3 81 209-289 70-150 (170)
38 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 2.1E-12 4.6E-17 127.3 13.1 150 124-291 14-174 (481)
39 KOG0117 Heterogeneous nuclear 99.4 8.5E-13 1.8E-17 124.5 9.4 81 209-289 81-162 (506)
40 KOG0131 Splicing factor 3b, su 99.4 5E-13 1.1E-17 113.0 5.6 82 208-289 6-87 (203)
41 TIGR01648 hnRNP-R-Q heterogene 99.4 4.2E-12 9.1E-17 126.7 12.1 150 124-292 70-223 (578)
42 KOG0114 Predicted RNA-binding 99.4 4.9E-12 1.1E-16 98.0 9.7 79 209-290 16-94 (124)
43 cd00590 RRM RRM (RNA recogniti 99.4 7.8E-12 1.7E-16 89.2 10.1 74 213-287 1-74 (74)
44 KOG0127 Nucleolar protein fibr 99.4 6.5E-12 1.4E-16 121.1 12.3 159 126-292 19-197 (678)
45 KOG0108 mRNA cleavage and poly 99.3 1.7E-12 3.8E-17 125.1 8.1 81 212-292 19-99 (435)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 7.7E-12 1.7E-16 123.4 11.3 78 209-291 273-351 (481)
47 KOG0146 RNA-binding protein ET 99.3 1.9E-12 4E-17 115.4 5.9 87 206-292 280-366 (371)
48 smart00361 RRM_1 RNA recogniti 99.3 1E-11 2.2E-16 90.7 8.3 62 225-286 2-70 (70)
49 KOG0105 Alternative splicing f 99.3 3E-12 6.6E-17 108.6 6.1 77 210-289 5-81 (241)
50 KOG0127 Nucleolar protein fibr 99.3 5.8E-12 1.3E-16 121.4 7.3 82 211-292 5-86 (678)
51 KOG0123 Polyadenylate-binding 99.3 2.6E-11 5.7E-16 115.5 11.2 142 124-291 10-153 (369)
52 PF13893 RRM_5: RNA recognitio 99.3 2.7E-11 5.8E-16 84.4 8.1 56 228-288 1-56 (56)
53 KOG0117 Heterogeneous nuclear 99.3 9.8E-12 2.1E-16 117.4 7.3 76 209-292 257-332 (506)
54 KOG0123 Polyadenylate-binding 99.2 2.9E-11 6.4E-16 115.2 7.6 160 118-290 82-245 (369)
55 KOG0109 RNA-binding protein LA 99.2 3.2E-11 7E-16 108.7 6.6 137 124-291 14-150 (346)
56 KOG0147 Transcriptional coacti 99.2 3.2E-11 7E-16 116.5 6.3 76 213-288 280-355 (549)
57 KOG0144 RNA-binding protein CU 99.2 1.1E-10 2.3E-15 110.1 9.2 82 209-290 32-116 (510)
58 KOG4205 RNA-binding protein mu 99.2 1.5E-10 3.3E-15 107.4 9.7 158 126-292 20-177 (311)
59 TIGR01642 U2AF_lg U2 snRNP aux 99.1 3.5E-10 7.5E-15 111.8 12.1 80 210-289 408-500 (509)
60 KOG0124 Polypyrimidine tract-b 99.1 3.6E-11 7.7E-16 111.2 4.7 77 211-287 113-189 (544)
61 KOG4208 Nucleolar RNA-binding 99.1 1.3E-10 2.7E-15 100.4 7.4 82 209-290 47-129 (214)
62 KOG0109 RNA-binding protein LA 99.1 8.8E-11 1.9E-15 105.9 6.1 73 212-292 3-75 (346)
63 KOG0131 Splicing factor 3b, su 99.1 8E-11 1.7E-15 99.8 5.0 157 122-292 19-178 (203)
64 KOG4206 Spliceosomal protein s 99.1 2E-10 4.4E-15 100.4 7.6 81 209-292 7-91 (221)
65 KOG0415 Predicted peptidyl pro 99.1 2.2E-10 4.7E-15 105.7 6.7 83 208-290 236-318 (479)
66 KOG0124 Polypyrimidine tract-b 99.0 2.7E-09 5.8E-14 99.0 11.3 82 209-290 208-289 (544)
67 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.3E-09 2.9E-14 105.7 9.4 84 208-291 402-485 (940)
68 KOG4212 RNA-binding protein hn 99.0 1.8E-09 4E-14 102.0 9.4 77 210-287 43-120 (608)
69 KOG0110 RNA-binding protein (R 98.9 1.3E-09 2.7E-14 108.3 7.1 81 210-290 612-692 (725)
70 KOG0146 RNA-binding protein ET 98.9 1.9E-09 4E-14 96.4 6.2 82 209-291 17-101 (371)
71 KOG0153 Predicted RNA-binding 98.9 9.3E-09 2E-13 94.9 10.3 76 209-290 226-302 (377)
72 KOG4205 RNA-binding protein mu 98.9 1.4E-09 3E-14 101.1 4.8 82 210-292 5-86 (311)
73 KOG0132 RNA polymerase II C-te 98.9 3.2E-09 7E-14 106.2 7.2 75 211-291 421-495 (894)
74 KOG1457 RNA binding protein (c 98.9 1.9E-08 4.1E-13 88.0 10.4 84 208-291 31-118 (284)
75 KOG0533 RRM motif-containing p 98.8 1.8E-08 3.8E-13 90.5 7.9 80 210-290 82-161 (243)
76 KOG0151 Predicted splicing reg 98.7 2.7E-08 5.9E-13 98.8 8.2 83 208-290 171-256 (877)
77 KOG0110 RNA-binding protein (R 98.7 4.8E-08 1E-12 97.2 8.3 78 212-289 516-596 (725)
78 KOG1548 Transcription elongati 98.7 1.2E-07 2.6E-12 87.6 10.0 80 209-289 132-219 (382)
79 PF04059 RRM_2: RNA recognitio 98.7 1.8E-07 3.9E-12 72.7 9.2 78 212-289 2-85 (97)
80 KOG4212 RNA-binding protein hn 98.6 6.2E-08 1.3E-12 91.8 6.7 76 208-288 533-608 (608)
81 KOG0226 RNA-binding proteins [ 98.6 4.2E-08 9.1E-13 87.3 4.9 80 207-286 186-265 (290)
82 KOG4209 Splicing factor RNPS1, 98.5 1.3E-07 2.8E-12 84.8 6.3 81 208-289 98-178 (231)
83 KOG0116 RasGAP SH3 binding pro 98.5 3E-07 6.4E-12 88.7 8.2 83 208-291 285-367 (419)
84 KOG0106 Alternative splicing f 98.4 1.9E-07 4.2E-12 82.2 4.2 71 212-290 2-72 (216)
85 KOG4454 RNA binding protein (R 98.3 1.9E-07 4.2E-12 81.5 1.8 78 209-288 7-84 (267)
86 KOG1995 Conserved Zn-finger pr 98.3 1.7E-06 3.7E-11 80.5 6.4 106 187-292 42-155 (351)
87 COG5175 MOT2 Transcriptional r 98.2 8.7E-07 1.9E-11 81.8 4.2 82 209-290 112-202 (480)
88 KOG0120 Splicing factor U2AF, 98.2 8.3E-07 1.8E-11 86.9 3.8 84 208-291 286-369 (500)
89 KOG4660 Protein Mei2, essentia 98.2 8.2E-07 1.8E-11 86.5 3.3 72 208-284 72-143 (549)
90 KOG4211 Splicing factor hnRNP- 98.1 7.5E-06 1.6E-10 79.0 8.3 78 209-290 8-85 (510)
91 KOG1190 Polypyrimidine tract-b 98.1 2.3E-05 5.1E-10 74.1 10.5 74 211-289 297-371 (492)
92 KOG4210 Nuclear localization s 98.0 3.2E-06 7E-11 78.1 3.0 82 210-292 183-265 (285)
93 KOG4206 Spliceosomal protein s 98.0 8.7E-05 1.9E-09 65.3 11.0 77 208-289 143-220 (221)
94 KOG0147 Transcriptional coacti 97.9 2.9E-06 6.3E-11 82.6 0.9 81 208-289 176-256 (549)
95 KOG4211 Splicing factor hnRNP- 97.8 4.3E-05 9.3E-10 73.8 7.2 78 209-288 101-179 (510)
96 PF11608 Limkain-b1: Limkain b 97.8 8.1E-05 1.8E-09 56.0 7.0 68 212-289 3-75 (90)
97 KOG1457 RNA binding protein (c 97.6 5.3E-05 1.1E-09 66.7 4.3 66 210-279 209-274 (284)
98 KOG1190 Polypyrimidine tract-b 97.5 0.00056 1.2E-08 65.0 9.0 78 209-290 412-490 (492)
99 KOG0106 Alternative splicing f 97.4 8.6E-05 1.9E-09 65.6 2.8 71 209-287 97-167 (216)
100 KOG2314 Translation initiation 97.4 0.00026 5.7E-09 69.5 6.2 75 211-286 58-139 (698)
101 PF08777 RRM_3: RNA binding mo 97.4 0.00044 9.5E-09 54.6 6.4 58 212-275 2-59 (105)
102 KOG3152 TBP-binding protein, a 97.4 9.9E-05 2.1E-09 66.1 3.0 73 210-282 73-157 (278)
103 KOG1456 Heterogeneous nuclear 97.3 0.0021 4.5E-08 60.6 10.6 79 206-289 282-361 (494)
104 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00072 1.6E-08 46.6 4.8 52 212-270 2-53 (53)
105 KOG2068 MOT2 transcription fac 97.2 0.00014 3.1E-09 67.4 1.6 81 210-291 76-163 (327)
106 KOG4849 mRNA cleavage factor I 97.0 0.00043 9.2E-09 64.6 2.9 75 211-285 80-156 (498)
107 KOG1456 Heterogeneous nuclear 97.0 0.0037 8E-08 59.0 9.0 77 210-291 119-199 (494)
108 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0032 7E-08 49.2 7.1 79 210-290 5-91 (100)
109 KOG1548 Transcription elongati 96.9 0.0029 6.2E-08 59.1 7.4 77 208-288 262-349 (382)
110 KOG4307 RNA binding protein RB 96.7 0.0051 1.1E-07 62.1 8.0 75 212-287 868-943 (944)
111 PF08952 DUF1866: Domain of un 96.6 0.012 2.7E-07 48.9 7.9 72 210-290 26-106 (146)
112 KOG0105 Alternative splicing f 96.4 0.022 4.8E-07 49.1 8.7 64 209-279 113-176 (241)
113 KOG0120 Splicing factor U2AF, 96.3 0.011 2.4E-07 58.4 7.4 62 227-288 425-489 (500)
114 KOG0128 RNA-binding protein SA 96.3 0.00037 8E-09 71.4 -3.2 70 210-279 666-735 (881)
115 KOG0129 Predicted RNA-binding 96.3 0.0093 2E-07 58.4 6.3 66 207-272 366-432 (520)
116 PF08675 RNA_bind: RNA binding 96.2 0.023 4.9E-07 42.8 6.9 55 211-274 9-63 (87)
117 KOG2193 IGF-II mRNA-binding pr 96.2 0.004 8.6E-08 59.6 3.3 74 212-292 2-77 (584)
118 KOG1855 Predicted RNA-binding 96.1 0.0072 1.6E-07 57.9 4.6 68 208-275 228-308 (484)
119 KOG1365 RNA-binding protein Fu 96.1 0.0057 1.2E-07 57.9 3.7 76 211-287 280-358 (508)
120 KOG1365 RNA-binding protein Fu 96.0 0.02 4.4E-07 54.3 7.0 62 210-272 160-225 (508)
121 KOG0129 Predicted RNA-binding 96.0 0.033 7.1E-07 54.6 8.5 66 208-274 256-327 (520)
122 KOG0112 Large RNA-binding prot 95.9 0.011 2.4E-07 61.2 5.1 77 208-290 452-530 (975)
123 KOG0128 RNA-binding protein SA 95.9 0.0036 7.7E-08 64.4 1.5 79 211-290 736-814 (881)
124 KOG2202 U2 snRNP splicing fact 95.8 0.0038 8.2E-08 56.2 1.1 61 227-288 84-145 (260)
125 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.053 1.1E-06 46.7 6.9 80 209-288 5-95 (176)
126 KOG2416 Acinus (induces apopto 95.3 0.014 3E-07 58.1 3.4 77 207-289 440-520 (718)
127 KOG1996 mRNA splicing factor [ 95.2 0.057 1.2E-06 49.7 6.6 63 226-288 301-364 (378)
128 KOG0115 RNA-binding protein p5 95.2 0.022 4.8E-07 51.3 3.8 62 212-274 32-93 (275)
129 KOG4307 RNA binding protein RB 94.8 0.04 8.6E-07 55.9 4.8 80 208-288 431-511 (944)
130 KOG4676 Splicing factor, argin 94.6 0.07 1.5E-06 50.8 5.7 73 212-285 8-83 (479)
131 PF10309 DUF2414: Protein of u 93.8 0.3 6.4E-06 34.8 6.2 55 211-273 5-62 (62)
132 KOG2253 U1 snRNP complex, subu 93.7 0.047 1E-06 55.1 2.7 70 208-286 37-106 (668)
133 KOG4660 Protein Mei2, essentia 93.5 0.12 2.6E-06 51.2 5.1 80 210-289 360-471 (549)
134 KOG2135 Proteins containing th 92.9 0.087 1.9E-06 51.3 3.2 76 209-291 370-446 (526)
135 KOG4285 Mitotic phosphoprotein 92.8 0.43 9.2E-06 44.2 7.4 64 211-282 197-260 (350)
136 KOG0112 Large RNA-binding prot 92.8 0.023 5.1E-07 58.9 -0.8 79 210-289 371-449 (975)
137 PF03880 DbpA: DbpA RNA bindin 92.2 0.63 1.4E-05 34.0 6.4 59 221-288 11-74 (74)
138 PF04847 Calcipressin: Calcipr 92.1 0.4 8.7E-06 41.6 6.1 60 225-290 9-70 (184)
139 PF07576 BRAP2: BRCA1-associat 91.5 2.6 5.6E-05 33.5 9.5 67 212-280 14-81 (110)
140 PF15023 DUF4523: Protein of u 89.8 1.7 3.6E-05 36.3 7.2 74 208-289 83-160 (166)
141 KOG4210 Nuclear localization s 88.5 0.24 5.3E-06 45.9 1.7 79 210-288 87-165 (285)
142 PF13696 zf-CCHC_2: Zinc knuck 87.5 0.4 8.6E-06 29.5 1.6 20 139-159 8-27 (32)
143 KOG2591 c-Mpl binding protein, 87.3 1.2 2.7E-05 44.4 5.7 59 209-274 173-233 (684)
144 KOG4574 RNA-binding protein (c 86.2 0.45 9.8E-06 49.5 2.2 74 213-292 300-375 (1007)
145 KOG4454 RNA binding protein (R 83.7 0.61 1.3E-05 41.5 1.6 126 122-276 19-148 (267)
146 KOG0804 Cytoplasmic Zn-finger 80.7 5.5 0.00012 39.0 6.9 67 211-280 74-142 (493)
147 KOG2193 IGF-II mRNA-binding pr 80.0 0.077 1.7E-06 51.1 -5.7 75 209-287 78-153 (584)
148 PF11767 SET_assoc: Histone ly 79.2 12 0.00027 26.9 6.8 55 222-285 11-65 (66)
149 KOG4410 5-formyltetrahydrofola 77.6 8.6 0.00019 35.6 6.8 47 211-263 330-377 (396)
150 KOG4676 Splicing factor, argin 77.3 0.52 1.1E-05 45.1 -1.0 64 211-279 151-214 (479)
151 COG0724 RNA-binding proteins ( 57.4 12 0.00026 32.1 3.5 71 208-278 222-292 (306)
152 PF00098 zf-CCHC: Zinc knuckle 56.2 7 0.00015 20.6 1.1 16 141-157 2-17 (18)
153 KOG2318 Uncharacterized conser 56.1 74 0.0016 32.4 8.9 80 208-287 171-304 (650)
154 PF13917 zf-CCHC_3: Zinc knuck 51.2 7.4 0.00016 25.4 0.8 19 139-158 4-22 (42)
155 PF10567 Nab6_mRNP_bdg: RNA-re 49.0 25 0.00054 32.7 4.1 78 211-288 15-105 (309)
156 PF07530 PRE_C2HC: Associated 47.0 34 0.00074 24.6 3.8 64 227-293 3-67 (68)
157 KOG4483 Uncharacterized conser 44.5 41 0.00089 32.7 4.9 55 210-271 390-445 (528)
158 KOG2295 C2H2 Zn-finger protein 43.8 3.1 6.7E-05 41.7 -2.7 71 210-280 230-300 (648)
159 KOG4019 Calcineurin-mediated s 43.2 17 0.00036 31.5 2.0 74 211-290 10-89 (193)
160 PF10751 DUF2535: Protein of u 42.1 25 0.00054 26.3 2.4 16 46-62 5-20 (83)
161 PF14787 zf-CCHC_5: GAG-polypr 40.3 14 0.0003 23.3 0.7 20 141-161 4-23 (36)
162 smart00596 PRE_C2HC PRE_C2HC d 39.5 42 0.00092 24.4 3.3 63 227-292 3-66 (69)
163 PF05593 RHS_repeat: RHS Repea 39.2 55 0.0012 20.3 3.5 21 39-61 12-32 (38)
164 PF03468 XS: XS domain; Inter 36.7 49 0.0011 26.4 3.6 44 224-270 30-74 (116)
165 KOG1295 Nonsense-mediated deca 33.5 53 0.0012 31.6 3.9 68 211-278 7-77 (376)
166 KOG4365 Uncharacterized conser 32.8 7.7 0.00017 37.9 -1.8 77 212-289 4-80 (572)
167 PF02756 GYR: GYR motif; Inte 30.3 82 0.0018 16.6 2.5 15 53-67 1-15 (18)
168 PF07292 NID: Nmi/IFP 35 domai 27.7 39 0.00084 25.7 1.5 24 210-233 51-74 (88)
169 PF15513 DUF4651: Domain of un 27.6 1.1E+02 0.0024 21.7 3.8 19 226-244 9-27 (62)
170 PF06357 Omega-toxin: Omega-at 26.9 68 0.0015 20.0 2.2 14 47-60 22-35 (37)
171 PLN03134 glycine-rich RNA-bind 24.8 58 0.0012 26.8 2.2 39 125-163 47-85 (144)
172 PF00379 Chitin_bind_4: Insect 24.4 73 0.0016 21.2 2.3 18 38-55 34-51 (52)
173 PF11191 DUF2782: Protein of u 22.2 96 0.0021 24.0 2.9 22 40-61 45-66 (105)
174 KOG1708 Mitochondrial/chloropl 22.1 89 0.0019 27.6 2.9 30 41-70 146-176 (236)
175 PF11823 DUF3343: Protein of u 21.6 1.2E+02 0.0025 21.7 3.1 28 255-282 3-30 (73)
176 TIGR01079 rplX_bact ribosomal 21.3 1.3E+02 0.0028 23.5 3.5 23 41-63 77-99 (104)
177 PF12970 DUF3858: Domain of Un 21.1 1.4E+02 0.003 23.9 3.6 40 31-77 55-94 (116)
178 PRK11901 hypothetical protein; 20.4 4.2E+02 0.009 25.2 7.1 63 208-275 242-306 (327)
No 1
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-72 Score=491.18 Aligned_cols=265 Identities=56% Similarity=0.958 Sum_probs=225.6
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCceeeecCCCCeEEEEEEEEcCCCCeEEEEEEEEEEEEeeeeeChhHHHHhCCccc
Q 022742 8 PTQPKLRWSELDEEDGEDLDFLLPPKQVIGPDENGVKKVIEYKFNDDGNKVKITTTTRVRKLANARLSKRALERRNWAKF 87 (293)
Q Consensus 8 ~~~~~~~Wad~~~~~~~~~~~~~p~~~~~~~~~~g~k~v~~y~~n~~g~kvkvt~~~k~~~~~~~~v~~~v~~Rk~w~kf 87 (293)
..+.+.||||++|+| .+||+.|++ +||+|+||+|++|+||+|||||++||++++ .|+|+||+||+|+||
T Consensus 2 ~~t~~~sWad~~e~~-----~l~P~~q~i---~~g~ktvieyk~n~dgkK~Kvt~~~kv~k~---~v~K~vaeRknW~KF 70 (270)
T KOG0122|consen 2 QKTKKLSWADEVEED-----GLLPPKQTI---EDGTKTVIEYKINEDGKKVKVTRTFKVEKR---AVPKAVAERKNWVKF 70 (270)
T ss_pred Ccccccchhhhhhcc-----cCCCcceee---cCCcEEEEEEEEcCCCcEEEEEEEEEEEEE---eccHHHHhhccchhh
Confidence 346788999998876 468888988 599999999999999999999999999999 799999999999999
Q ss_pred cccccCCCCC-CCceeecccEEeecCCCCCCCchhchhhhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccc
Q 022742 88 GDAVREDVGS-RLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAE 166 (293)
Q Consensus 88 G~~~~~~~~~-~~t~~~~eei~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~ 166 (293)
|+++++++|+ ..||.++|||.|+|++++ ..+++..+..+.+.++ ..+++.||+|+ |+||+.+||||.++.+
T Consensus 71 G~~~~~~~Gp~~~Tt~v~EeI~l~~~~~~-~~~~~~~~~~d~~s~~---g~~~~~CR~C~--gdHwt~~CPyK~~~~~-- 142 (270)
T KOG0122|consen 71 GDSKGEPAGPSVATTRVTEEIELRFIRSP-TFEEEQDIQEDKASKL---GKSIVACRICK--GDHWTTNCPYKDTLSP-- 142 (270)
T ss_pred ccccCCCCCCceeeEecccceeEEeccCc-ccchhhhhhhcchhhc---ccceeeeeecC--CCeeeecCCchhhccc--
Confidence 9999987775 579999999999999886 2333333333333333 45789999998 9999999999999986
Q ss_pred cccCCCcccHHHHH--hcCCCCCCcCCCCCCCcccCC-CCccccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEE
Q 022742 167 TFIDKPAASETAAA--AAGATKGTYVPPGMRAGAERT-GTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYV 243 (293)
Q Consensus 167 ~~~~~~~~~~~~~~--~~~~~~g~yvpp~~r~~~~~~-~~~~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l 243 (293)
..+.++.++.++. +.+...|+|+||++|.++.+. +..++.+++.++|+|+|||++++|.+|++||.+||.|.+|+|
T Consensus 143 -~lde~~~~e~~~~~~ap~~~~g~yvpP~mR~ga~~~~g~~~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvyl 221 (270)
T KOG0122|consen 143 -ALDEPATAESPAESAAPGTKKGKYVPPSMRAGADRASGSDMRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYL 221 (270)
T ss_pred -cccCCcccccchhhcCcCCcCccccCccccCCcccccccccccCCccceeEEecCccccChhHHHHHhhccCccceeEE
Confidence 2233322222222 236688999999999998433 555677889999999999999999999999999999999999
Q ss_pred EecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 022742 244 AVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRT 292 (293)
Q Consensus 244 ~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akpk~ 292 (293)
++|+.||.+||||||+|.++++|++||..|||+.|++++|+|+|++|+.
T Consensus 222 ardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~~ 270 (270)
T KOG0122|consen 222 ARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPSN 270 (270)
T ss_pred EEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999974
No 2
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=100.00 E-value=1e-40 Score=271.52 Aligned_cols=126 Identities=45% Similarity=0.764 Sum_probs=105.3
Q ss_pred CCceeeecCCCCeEEEEEEEEcCCCCeEEEEEEEEEEEEeeeeeChhHHHHhCCccccccccCC-CCCCCceeecccEEe
Q 022742 31 PPKQVIGPDENGVKKVIEYKFNDDGNKVKITTTTRVRKLANARLSKRALERRNWAKFGDAVRED-VGSRLTMVSTEEILL 109 (293)
Q Consensus 31 p~~~~~~~~~~g~k~v~~y~~n~~g~kvkvt~~~k~~~~~~~~v~~~v~~Rk~w~kfG~~~~~~-~~~~~t~~~~eei~~ 109 (293)
||++++.+|+||+|+||+|++|+||+|||||++||++++++ +|+++||+||+|+|||++++++ |++..||+++|||+|
T Consensus 1 pp~~e~~~~~~G~KtViey~~n~dGkkvKvtk~~k~~~~~~-~V~k~VaeRk~W~KFG~~~~~~pGp~~~Tt~~~EeI~l 79 (128)
T PF12353_consen 1 PPPQEIIPDEDGIKTVIEYKFNDDGKKVKVTKKIKVTVVKE-KVNKAVAERKKWKKFGDEKNDPPGPDSSTTQVGEEIFL 79 (128)
T ss_pred CCCceEccCCCCcEEEEEEEECCCCCEEEEEEEEEEEEEEE-EeCHHHHHhhCccccCccccCCCCCCcccccccceEEE
Confidence 45555558999999999999999999999999999999999 9999999999999999999965 456689999999999
Q ss_pred ecCCCCCCCchhchhhhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCC
Q 022742 110 ERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLA 162 (293)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~ 162 (293)
++++++...++++..++. ........+++||+|+ |+|||.+|||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~CR~Ck--GdH~T~~CPyKd~~ 127 (128)
T PF12353_consen 80 ELSRNWESEEEEEEEEEA---KKKKKGKSKVKCRICK--GDHWTSKCPYKDTL 127 (128)
T ss_pred EecCCccccccccccchh---hhcccCCceEEeCCCC--CCcccccCCccccc
Confidence 999886543333222212 3334467899999998 99999999999986
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=3.2e-18 Score=142.71 Aligned_cols=85 Identities=36% Similarity=0.509 Sum_probs=81.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||+|||+++++++|+++|.+||.|.++.++.++.|++++|||||+|.+.++|+.||+.|||..|+|+.|+|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
+++++
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 98764
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=7.7e-18 Score=158.54 Aligned_cols=82 Identities=41% Similarity=0.622 Sum_probs=79.2
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATP 290 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akp 290 (293)
..+|||+|||+++++++|+++|++||.|.+++|++|+.||.++|||||.|.+.++|.+||..|||..|+|+.|+|.|+.+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 022742 291 RT 292 (293)
Q Consensus 291 k~ 292 (293)
+.
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 75
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=9.5e-18 Score=158.43 Aligned_cols=153 Identities=23% Similarity=0.301 Sum_probs=111.8
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCCC-CCCcccCCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPPG-MRAGAERTGT 203 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp~-~r~~~~~~~~ 203 (293)
+++.|..+|+.++.|+.|+++.++.......|.|..+..+ +.+..+.....+..+-.. ++-.... +
T Consensus 120 te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~-----------e~A~~Ai~~LnG~~l~gr~i~V~~a~-p- 186 (346)
T TIGR01659 120 TDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSE-----------ADSQRAIKNLNGITVRNKRLKVSYAR-P- 186 (346)
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccH-----------HHHHHHHHHcCCCccCCceeeeeccc-c-
Confidence 3567999999999999999997533334445677776542 111111222233322111 1100000 0
Q ss_pred ccccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC--e
Q 022742 204 DMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN--L 281 (293)
Q Consensus 204 ~~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g--~ 281 (293)
.......++|||+|||..+++++|+++|++||.|..+.|++++.+++++|||||+|.+.++|++||+.||+..+.+ +
T Consensus 187 -~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~ 265 (346)
T TIGR01659 187 -GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQ 265 (346)
T ss_pred -cccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCce
Confidence 0112345789999999999999999999999999999999999999999999999999999999999999998875 7
Q ss_pred EEEEEeccCC
Q 022742 282 ILRVEWATPR 291 (293)
Q Consensus 282 ~L~V~~Akpk 291 (293)
+|+|.||+.+
T Consensus 266 ~l~V~~a~~~ 275 (346)
T TIGR01659 266 PLTVRLAEEH 275 (346)
T ss_pred eEEEEECCcc
Confidence 9999999864
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.73 E-value=3.9e-17 Score=162.85 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=111.9
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCC--------CCCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVP--------PGMRA 196 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvp--------p~~r~ 196 (293)
.++.|..+|+.+|.+..|+++.++..--...|.|..+.... .+..+....+|..+. |....
T Consensus 120 tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e-----------~A~~Ai~~lnG~~i~GR~IkV~rp~~~p 188 (612)
T TIGR01645 120 REDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPE-----------AAQLALEQMNGQMLGGRNIKVGRPSNMP 188 (612)
T ss_pred CHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHH-----------HHHHHHHhcCCeEEecceeeeccccccc
Confidence 45689999999999999999764322223455666665421 111111122222111 00000
Q ss_pred cccC-CCCccccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCC
Q 022742 197 GAER-TGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNG 275 (293)
Q Consensus 197 ~~~~-~~~~~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng 275 (293)
.... ...........++|||+|||.++++++|+++|+.||.|.+++|.+++.+|.++|||||.|.+.++|.+||..|||
T Consensus 189 ~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg 268 (612)
T TIGR01645 189 QAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNL 268 (612)
T ss_pred ccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCC
Confidence 0000 000011123457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeCCeEEEEEeccCCC
Q 022742 276 YGYDNLILRVEWATPRT 292 (293)
Q Consensus 276 ~~i~g~~L~V~~Akpk~ 292 (293)
+.++|+.|+|.++.+.+
T Consensus 269 ~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 269 FDLGGQYLRVGKCVTPP 285 (612)
T ss_pred CeeCCeEEEEEecCCCc
Confidence 99999999999998654
No 7
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=4.4e-17 Score=152.56 Aligned_cols=172 Identities=26% Similarity=0.333 Sum_probs=132.4
Q ss_pred cccEEeecCCCCCCCchhchhhhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcC
Q 022742 104 TEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAG 183 (293)
Q Consensus 104 ~eei~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~ 183 (293)
.+-|.|..+..++...| ..|..+|+.+|++..|.+-+++...-+..|.|...... +.+..+..
T Consensus 32 ~~~vKlfVgqIprt~sE------~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~tr-----------k~a~~a~~ 94 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASE------KDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTR-----------KEADEAIN 94 (510)
T ss_pred chhhhheeccCCccccH------HHHHHHHHHhCceeEEEeecccccCcccceEEEEeccH-----------HHHHHHHH
Confidence 34466766655543333 46889999999999999999877778888999888763 22333345
Q ss_pred CCCCCcCCCCCCCcccCCCCccc--cCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEc
Q 022742 184 ATKGTYVPPGMRAGAERTGTDMR--RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFV 261 (293)
Q Consensus 184 ~~~g~yvpp~~r~~~~~~~~~~~--~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~ 261 (293)
+.+...+-|++...-........ +-.+++.|||+.|+..++|.+++++|++||.|++|+|++|.. +.+||||||.|.
T Consensus 95 Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fs 173 (510)
T KOG0144|consen 95 ALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFS 173 (510)
T ss_pred HhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEe
Confidence 56666666666554433322111 224588999999999999999999999999999999999965 999999999999
Q ss_pred CHHHHHHHHHHhCCc-eeC--CeEEEEEeccCCCC
Q 022742 262 NKEDAQRAINKLNGY-GYD--NLILRVEWATPRTN 293 (293)
Q Consensus 262 ~~e~A~~Ai~~Lng~-~i~--g~~L~V~~Akpk~~ 293 (293)
+++.|..||+.|||. .+. ..+|.|.||.++++
T Consensus 174 tke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 174 TKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred hHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 999999999999997 344 48999999998753
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=2.4e-16 Score=148.40 Aligned_cols=83 Identities=33% Similarity=0.608 Sum_probs=79.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
..++|||+|||.++++++|+++|+.||+|.+|+|++++.+|+++|||||+|.+.++|++||+.|||..|.|+.|+|+|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 022742 290 PRT 292 (293)
Q Consensus 290 pk~ 292 (293)
|+.
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 764
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=1.6e-15 Score=109.22 Aligned_cols=70 Identities=34% Similarity=0.638 Sum_probs=67.4
Q ss_pred EEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 214 VRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 214 v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
|||+|||+++++++|+++|++||.|..+.+..+ .++..+|||||.|.+.++|++|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6799999999999999999999999999999999986
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.64 E-value=1.3e-15 Score=143.97 Aligned_cols=85 Identities=36% Similarity=0.591 Sum_probs=81.0
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 207 RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 207 ~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
.....++|||+|||+++++++|+++|+.||.|..|+|++|+.|++++|||||+|.+.++|++||..|||..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 022742 287 WATPR 291 (293)
Q Consensus 287 ~Akpk 291 (293)
|++|.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 99874
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.63 E-value=3.1e-15 Score=145.86 Aligned_cols=156 Identities=21% Similarity=0.317 Sum_probs=108.3
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcC-CCCCCc--CCCCCCCc--ccC
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAG-ATKGTY--VPPGMRAG--AER 200 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~y--vpp~~r~~--~~~ 200 (293)
++.|..+|+.+|.+..|+++.++...-...+.|..+..... +..+....+ ...|.. +.+..... ...
T Consensus 103 ~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~--------A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~ 174 (457)
T TIGR01622 103 ERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVES--------VIKALALTGQMLLGRPIIVQSSQAEKNRAAK 174 (457)
T ss_pred HHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHH--------HHHHHHhCCCEECCeeeEEeecchhhhhhhh
Confidence 45688999999999999998743333344566666654211 111111100 011111 00000000 000
Q ss_pred -CCCccccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC
Q 022742 201 -TGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD 279 (293)
Q Consensus 201 -~~~~~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~ 279 (293)
...........++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|.
T Consensus 175 ~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~ 254 (457)
T TIGR01622 175 AATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA 254 (457)
T ss_pred cccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC
Confidence 0000011233689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecc
Q 022742 280 NLILRVEWAT 289 (293)
Q Consensus 280 g~~L~V~~Ak 289 (293)
|+.|+|.|+.
T Consensus 255 g~~i~v~~a~ 264 (457)
T TIGR01622 255 GRPIKVGYAQ 264 (457)
T ss_pred CEEEEEEEcc
Confidence 9999999975
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.61 E-value=4.3e-15 Score=148.82 Aligned_cols=83 Identities=34% Similarity=0.546 Sum_probs=78.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||+||+..+++++|+++|++||.|.++.++.+ .+|.++|||||.|.+.++|.+|+..|||..++|++|.|.||
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 45678999999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
.++.
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 8763
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.59 E-value=5.4e-15 Score=148.11 Aligned_cols=152 Identities=26% Similarity=0.350 Sum_probs=109.7
Q ss_pred hhhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhc-CC-CCCCc--CCCCCCCccc
Q 022742 124 AAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAA-GA-TKGTY--VPPGMRAGAE 199 (293)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~y--vpp~~r~~~~ 199 (293)
..++.|..+|+.+|.+..|++|.++...-+..+.|..+....+ +..+.... .. ..|+. +-...+
T Consensus 12 vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~--------A~~Al~~ln~~~i~gk~i~i~~s~~---- 79 (562)
T TIGR01628 12 VTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPAD--------AERALETMNFKRLGGKPIRIMWSQR---- 79 (562)
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHH--------HHHHHHHhCCCEECCeeEEeecccc----
Confidence 3456899999999999999999854433444566666654211 11111111 11 11221 111111
Q ss_pred CCCCccccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC
Q 022742 200 RTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD 279 (293)
Q Consensus 200 ~~~~~~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~ 279 (293)
....+.....+|||+|||.++++++|+++|+.||.|..|.++.+. +|+++|||||.|.+.++|.+||+.|||..++
T Consensus 80 ---~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~ 155 (562)
T TIGR01628 80 ---DPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLN 155 (562)
T ss_pred ---cccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEec
Confidence 111123345689999999999999999999999999999999884 6899999999999999999999999999999
Q ss_pred CeEEEEEeccCC
Q 022742 280 NLILRVEWATPR 291 (293)
Q Consensus 280 g~~L~V~~Akpk 291 (293)
++.|.|....++
T Consensus 156 ~~~i~v~~~~~~ 167 (562)
T TIGR01628 156 DKEVYVGRFIKK 167 (562)
T ss_pred CceEEEeccccc
Confidence 999999876654
No 14
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=3.8e-15 Score=119.20 Aligned_cols=81 Identities=30% Similarity=0.533 Sum_probs=77.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
...+++|||+||+..++|++|.+||+++|.|.+|.+-.|+.+..+.||+||+|.+.++|+.|++.+||..++.++|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 022742 288 A 288 (293)
Q Consensus 288 A 288 (293)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 15
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=3.2e-14 Score=103.20 Aligned_cols=70 Identities=44% Similarity=0.699 Sum_probs=65.4
Q ss_pred EEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 214 VRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 214 v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
|||+|||+++++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 99999999999999999999999999999999885
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=3.6e-14 Score=126.36 Aligned_cols=151 Identities=22% Similarity=0.299 Sum_probs=106.4
Q ss_pred hhhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCCCC-C------C
Q 022742 124 AAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPPGM-R------A 196 (293)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp~~-r------~ 196 (293)
++.+.|+..|..+|.+-.||+-.+ .|-..+--|....-+ .+. .++. +.....|..+.... | .
T Consensus 74 I~~e~lr~aF~pFGevS~akvirD--~~T~KsKGYgFVSf~-----~k~-dAEn---AI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 74 IDNEKLREAFAPFGEVSDAKVIRD--MNTGKSKGYGFVSFP-----NKE-DAEN---AIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred cchHHHHHHhccccccccceEeec--ccCCcccceeEEecc-----chH-HHHH---HHHHhCCeeeccceeeccccccC
Confidence 445678999999999999999873 332222222222111 111 1222 23344455443221 1 1
Q ss_pred cccCC--CCc-----cccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHH
Q 022742 197 GAERT--GTD-----MRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRA 269 (293)
Q Consensus 197 ~~~~~--~~~-----~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~A 269 (293)
..+.. +.. .....+.++|||+|++..++|++|+..|++||+|.+|++.++ +|||||.|.+.|.|..|
T Consensus 143 p~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahA 216 (321)
T KOG0148|consen 143 PSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHA 216 (321)
T ss_pred ccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHH
Confidence 11111 111 123578899999999999999999999999999999999887 68999999999999999
Q ss_pred HHHhCCceeCCeEEEEEeccCC
Q 022742 270 INKLNGYGYDNLILRVEWATPR 291 (293)
Q Consensus 270 i~~Lng~~i~g~~L~V~~Akpk 291 (293)
|..+|+..+.|..+++.|.|..
T Consensus 217 Iv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 217 IVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred HHHhcCceeCceEEEEeccccC
Confidence 9999999999999999998864
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.8e-14 Score=128.34 Aligned_cols=82 Identities=43% Similarity=0.650 Sum_probs=79.5
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATP 290 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akp 290 (293)
...|||+.|+..++-++|++.|.+||+|..++|++|..|++++||+||.|.+.++|++||..|||.-|++|.||-.||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 022742 291 RT 292 (293)
Q Consensus 291 k~ 292 (293)
|+
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 74
No 18
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.54 E-value=1e-14 Score=125.49 Aligned_cols=82 Identities=38% Similarity=0.573 Sum_probs=78.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
.+...+|.|-||...++.++|+.+|++||.|-.|+|.+|+.|+.++|||||-|....+|+.|+++|+|..|+|+-|+|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 022742 288 AT 289 (293)
Q Consensus 288 Ak 289 (293)
|+
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 86
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.52 E-value=4.2e-14 Score=141.31 Aligned_cols=81 Identities=28% Similarity=0.432 Sum_probs=77.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||+|||+++++++|+++|.+||.|.+|++++|+.||+++|||||+|.+.++|++||+.|||..++|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred c
Q 022742 289 T 289 (293)
Q Consensus 289 k 289 (293)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=8.3e-14 Score=123.53 Aligned_cols=84 Identities=33% Similarity=0.606 Sum_probs=80.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
+..+.|.|.-||.++++++|+.||+..|+|++|.|++|+.+|++-||+||.|.+++||++||..|||..+..+.|+|.||
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
+|+.
T Consensus 119 RPSs 122 (360)
T KOG0145|consen 119 RPSS 122 (360)
T ss_pred cCCh
Confidence 9975
No 21
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=8.3e-14 Score=125.23 Aligned_cols=75 Identities=23% Similarity=0.328 Sum_probs=70.8
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
.++|||+|||+.+++++|+++|+.||.|.+|.|++++. .+|||||+|.+.++|+.||. |||..|.|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 57999999999999999999999999999999998854 57999999999999999995 99999999999999986
No 22
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=5.5e-14 Score=128.08 Aligned_cols=82 Identities=34% Similarity=0.523 Sum_probs=76.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
.+..++|+|+|||....+-||+.+|.+||.|.+|.|+.+ ...+|||+||+|++.+||++|-+.|||..+.||+|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 456789999999999999999999999999999999887 356899999999999999999999999999999999999
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
|.++
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 9865
No 23
>PLN03213 repressor of silencing 3; Provisional
Probab=99.50 E-value=6.4e-14 Score=133.39 Aligned_cols=78 Identities=27% Similarity=0.477 Sum_probs=72.9
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCH--HHHHHHHHHhCCceeCCeEEEEEe
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNK--EDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~--e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
...+|||+||++.+++++|+.+|+.||.|.+|.|+ +.|| ||||||+|... .++.+||..|||..++|+.|+|.-
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 35799999999999999999999999999999999 5677 99999999987 789999999999999999999999
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
|+|.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9975
No 24
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=4.8e-14 Score=123.47 Aligned_cols=79 Identities=29% Similarity=0.408 Sum_probs=72.6
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
..++|||++|+|.+..+.|+++|++||+|.+..|+.|+.||+++||+||+|.+.+.|.+|++- ..-.|+||+-++.+|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 467999999999999999999999999999999999999999999999999999999999974 4468999998887653
No 25
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=8.7e-13 Score=117.12 Aligned_cols=83 Identities=41% Similarity=0.609 Sum_probs=79.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
....|||-||+++++|.-|.++|++||.|..|.+++|..|.+|+||+||++.+-++|..||..|||+.++++.|.|.|..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCC
Q 022742 290 PRT 292 (293)
Q Consensus 290 pk~ 292 (293)
.+.
T Consensus 357 nk~ 359 (360)
T KOG0145|consen 357 NKA 359 (360)
T ss_pred CCC
Confidence 653
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.48 E-value=2.3e-13 Score=134.45 Aligned_cols=82 Identities=26% Similarity=0.406 Sum_probs=78.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||+|||..+++++|+++|+.||.|..+.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+|
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 022742 289 TP 290 (293)
Q Consensus 289 kp 290 (293)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 64
No 27
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.8e-13 Score=115.01 Aligned_cols=79 Identities=34% Similarity=0.534 Sum_probs=72.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..-.+.|||+||+..+++.+|..+|..||+|..|.|.++ +.|||||+|.+..+|+.|+..|+|..|.|..|+|++
T Consensus 7 ~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 7 RNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred cCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 345789999999999999999999999999999999875 579999999999999999999999999999999999
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
+.-+
T Consensus 82 S~G~ 85 (195)
T KOG0107|consen 82 STGR 85 (195)
T ss_pred ecCC
Confidence 8643
No 28
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.3e-13 Score=122.72 Aligned_cols=82 Identities=24% Similarity=0.436 Sum_probs=78.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
.++.+||||+-|+.+++|..|+..|..||+|.+|.|+.|..||+++|||||+|....+...|.+..+|..|+|+.|-|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 022742 288 AT 289 (293)
Q Consensus 288 Ak 289 (293)
-.
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 54
No 29
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=6e-13 Score=94.54 Aligned_cols=72 Identities=46% Similarity=0.693 Sum_probs=67.6
Q ss_pred eEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 213 SVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 213 ~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
+|+|+|||..+++++|+++|.+||.+..+.+..++ +.++|+|||+|.+.+.|++|+..|+|..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 7889999999999999999999999999999998873
No 30
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=4.2e-13 Score=118.44 Aligned_cols=79 Identities=47% Similarity=0.687 Sum_probs=76.8
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
.++|||+|||..+++++|.++|.+||.+.++.+..++.+|.++|||||.|.+.++|..|+..|+|..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999964
No 31
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=7.7e-13 Score=93.54 Aligned_cols=71 Identities=44% Similarity=0.699 Sum_probs=67.4
Q ss_pred EecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 216 VTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 216 V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
|+|||..+++++|+.+|.+||.|..+.+..++.++.++|+|||.|.+.++|..|+..|++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999988889999999999999999999999999999999999874
No 32
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=3e-14 Score=120.41 Aligned_cols=80 Identities=26% Similarity=0.480 Sum_probs=76.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..++.-|||+|||.+.+|.||-.+|++||.|..|.|++|..||+++||||+.|.+-.+.--|+..|||..|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999984
No 33
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1e-13 Score=120.38 Aligned_cols=83 Identities=33% Similarity=0.555 Sum_probs=80.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||++|..+++|.-|...|-+||.|..|.++.|.+++++||||||+|...++|.+||..||+..|-|+.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 022742 289 TPR 291 (293)
Q Consensus 289 kpk 291 (293)
+|-
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 985
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.42 E-value=7.6e-13 Score=129.09 Aligned_cols=81 Identities=28% Similarity=0.397 Sum_probs=76.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||. |+|..+.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 457899999999999999999999999999999999999999999999999999999999996 9999999999999987
Q ss_pred cC
Q 022742 289 TP 290 (293)
Q Consensus 289 kp 290 (293)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 54
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.41 E-value=6.3e-13 Score=132.55 Aligned_cols=81 Identities=30% Similarity=0.477 Sum_probs=74.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEEe
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD-NLILRVEW 287 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~-g~~L~V~~ 287 (293)
...++|||+|||.+++|++|+++|++||.|..++|++| .+|+++|||||+|.+.++|++||+.||+..+. |+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34689999999999999999999999999999999999 78999999999999999999999999999885 78888877
Q ss_pred ccC
Q 022742 288 ATP 290 (293)
Q Consensus 288 Akp 290 (293)
+..
T Consensus 135 S~~ 137 (578)
T TIGR01648 135 SVD 137 (578)
T ss_pred ccc
Confidence 653
No 36
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.41 E-value=1.2e-12 Score=116.18 Aligned_cols=75 Identities=21% Similarity=0.254 Sum_probs=69.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...+|||+||++.+++++|+++|+.||.|.+|.|+++. .++|||||+|.+++.++.|+ .|||..|.++.|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 46899999999999999999999999999999999884 45689999999999999999 59999999999998864
No 37
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=3.6e-13 Score=108.87 Aligned_cols=81 Identities=26% Similarity=0.505 Sum_probs=78.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
-....|||+++.+.++|+++.+.|..||+|..+.|..|+.||..+|||+|+|.+.+.|+.||..|||..|.|+.|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 022742 289 T 289 (293)
Q Consensus 289 k 289 (293)
-
T Consensus 150 F 150 (170)
T KOG0130|consen 150 F 150 (170)
T ss_pred E
Confidence 5
No 38
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.41 E-value=2.1e-12 Score=127.33 Aligned_cols=150 Identities=20% Similarity=0.204 Sum_probs=100.7
Q ss_pred hhhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHh----cCCCCCC--cCCCCCCCc
Q 022742 124 AAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAA----AGATKGT--YVPPGMRAG 197 (293)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~--yvpp~~r~~ 197 (293)
.+++.|..+|+.+|.+..|+++..+ .|.|..+.... .+..+... .....|+ ++-.+.+..
T Consensus 14 ~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e--------~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 14 VVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEE--------SAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred CCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchH--------HHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 4457899999999999999988632 34555554421 11112111 0111222 221111111
Q ss_pred ccCCCC---ccccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhC
Q 022742 198 AERTGT---DMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLN 274 (293)
Q Consensus 198 ~~~~~~---~~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Ln 274 (293)
..+... .........+|+|.||++.+++++|+++|+.||.|.+|.+.++.. +|+|||+|.+.++|.+|++.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Ln 155 (481)
T TIGR01649 80 IKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALN 155 (481)
T ss_pred cccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhc
Confidence 000000 011122345899999999999999999999999999999987643 4799999999999999999999
Q ss_pred CceeCC--eEEEEEeccCC
Q 022742 275 GYGYDN--LILRVEWATPR 291 (293)
Q Consensus 275 g~~i~g--~~L~V~~Akpk 291 (293)
|..|.+ ..|+|+||++.
T Consensus 156 g~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 156 GADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred CCcccCCceEEEEEEecCC
Confidence 999864 68999999874
No 39
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=8.5e-13 Score=124.53 Aligned_cols=81 Identities=32% Similarity=0.496 Sum_probs=76.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEEe
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD-NLILRVEW 287 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~-g~~L~V~~ 287 (293)
...+.|||+.||.++.|++|.-||++.|+|..++|++|+.+|.+||||||+|.+.+.|+.||+.||++.|. |+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999886 88888887
Q ss_pred cc
Q 022742 288 AT 289 (293)
Q Consensus 288 Ak 289 (293)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 64
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.38 E-value=5e-13 Score=113.03 Aligned_cols=82 Identities=35% Similarity=0.455 Sum_probs=78.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
+++..+|||+||++.++++-|.+||-+.|+|.++++.+|+.+...+||||++|.++++|+-||+.||...+.|++|+|.-
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 022742 288 AT 289 (293)
Q Consensus 288 Ak 289 (293)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 75
No 41
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.36 E-value=4.2e-12 Score=126.70 Aligned_cols=150 Identities=21% Similarity=0.239 Sum_probs=102.7
Q ss_pred hhhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCCCCCCcccCCCC
Q 022742 124 AAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPPGMRAGAERTGT 203 (293)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp~~r~~~~~~~~ 203 (293)
..++.|..+|+.+|.++.|+++.+ -+--+..+.|..+... +.+..+.....+..+.+...-..
T Consensus 70 ~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~-----------e~A~~Ai~~lng~~i~~Gr~l~V----- 132 (578)
T TIGR01648 70 LYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGK-----------EEAKEAVKLLNNYEIRPGRLLGV----- 132 (578)
T ss_pred CCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCH-----------HHHHHHHHHcCCCeecCCccccc-----
Confidence 345689999999999999999863 1222334556655542 22222223333433322211111
Q ss_pred ccccCCCCceEEEecCCCCCCHHHHHHhhcCCCC-eeEE-EEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCC--ceeC
Q 022742 204 DMRRRNDENSVRVTNLSEDTREPDLLELFRPFGA-VSRV-YVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNG--YGYD 279 (293)
Q Consensus 204 ~~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~-i~~v-~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng--~~i~ 279 (293)
....+.++|||+|||.++++++|.++|++++. +..+ .+.....+++++|||||+|.++++|..|++.|+. ..+.
T Consensus 133 --~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~ 210 (578)
T TIGR01648 133 --CISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 210 (578)
T ss_pred --cccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEec
Confidence 11234689999999999999999999999864 3333 3333345678899999999999999999998864 4688
Q ss_pred CeEEEEEeccCCC
Q 022742 280 NLILRVEWATPRT 292 (293)
Q Consensus 280 g~~L~V~~Akpk~ 292 (293)
|+.|.|.|+.|..
T Consensus 211 Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 211 GHVIAVDWAEPEE 223 (578)
T ss_pred CceEEEEeecccc
Confidence 9999999998853
No 42
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=4.9e-12 Score=97.99 Aligned_cols=79 Identities=25% Similarity=0.482 Sum_probs=72.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.-.+.|||.|||..++.+++.++|++||.|..|+|-..++ .+|-|||.|++..+|.+|++.|+|+.++++.|.|-+-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 4568999999999999999999999999999999976655 4899999999999999999999999999999999886
Q ss_pred cC
Q 022742 289 TP 290 (293)
Q Consensus 289 kp 290 (293)
.|
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 65
No 43
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.36 E-value=7.8e-12 Score=89.18 Aligned_cols=74 Identities=45% Similarity=0.679 Sum_probs=69.2
Q ss_pred eEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 213 SVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 213 ~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
+|+|+|||..+++++|+++|..||.|..+.+..++.+ .++|+|||.|.+.++|..|+..+++..++|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988664 7799999999999999999999999999999999875
No 44
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=6.5e-12 Score=121.08 Aligned_cols=159 Identities=22% Similarity=0.348 Sum_probs=108.6
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHh-cCCCCCCc--CC---CCCCCccc
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAA-AGATKGTY--VP---PGMRAGAE 199 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~y--vp---p~~r~~~~ 199 (293)
.+.|..+|+..|.+-.|-+.+.+|..-...+-|+.+....+. ..+.+.. .....|.. +- +..|....
T Consensus 19 ~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~-------qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~ 91 (678)
T KOG0127|consen 19 GEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDV-------QRALAETEQSKFEGRILNVDPAKKRARSEEV 91 (678)
T ss_pred hhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHH-------HHHHHHhhcCcccceecccccccccccchhc
Confidence 457889999889999999888666555555556655442111 0011110 11112221 11 11111100
Q ss_pred CCCC-----cc-c------c--CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHH
Q 022742 200 RTGT-----DM-R------R--RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKED 265 (293)
Q Consensus 200 ~~~~-----~~-~------~--~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~ 265 (293)
..+. -+ . . ..+...|.|.|||+.+...+|+.+|+.||.|..|.|++.+.++.| |||||.|....+
T Consensus 92 ~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~d 170 (678)
T KOG0127|consen 92 EKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKD 170 (678)
T ss_pred ccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHH
Confidence 0000 00 0 0 122568999999999999999999999999999999988876665 999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEeccCCC
Q 022742 266 AQRAINKLNGYGYDNLILRVEWATPRT 292 (293)
Q Consensus 266 A~~Ai~~Lng~~i~g~~L~V~~Akpk~ 292 (293)
|..||+.+||..|+|++|-|.||-++.
T Consensus 171 A~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 171 AEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred HHHHHHhccCceecCceeEEeeecccc
Confidence 999999999999999999999998764
No 45
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.35 E-value=1.7e-12 Score=125.12 Aligned_cols=81 Identities=38% Similarity=0.635 Sum_probs=78.6
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 291 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akpk 291 (293)
+.|||+|+|+++++++|..+|+..|.|..++++.|+.||+++||||++|.+.++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred C
Q 022742 292 T 292 (293)
Q Consensus 292 ~ 292 (293)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.32 E-value=7.7e-12 Score=123.38 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=72.1
Q ss_pred CCCceEEEecCCC-CCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 209 NDENSVRVTNLSE-DTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 209 ~~~~~v~V~nLp~-~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
...++|||+||++ .+++++|+++|+.||.|.+|.++++ .+|||||+|.+.++|..||..|||..|.|+.|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4668999999998 6999999999999999999999886 269999999999999999999999999999999999
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
++..
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8653
No 47
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=1.9e-12 Score=115.41 Aligned_cols=87 Identities=31% Similarity=0.544 Sum_probs=83.1
Q ss_pred ccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 022742 206 RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRV 285 (293)
Q Consensus 206 ~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V 285 (293)
+..++.|+|||-.||.+..+.+|-.+|-.||.|.+..+..||.|+.+++|+||.|++..+|+.||..|||+.|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 022742 286 EWATPRT 292 (293)
Q Consensus 286 ~~Akpk~ 292 (293)
++.+||.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 9999985
No 48
>smart00361 RRM_1 RNA recognition motif.
Probab=99.31 E-value=1e-11 Score=90.75 Aligned_cols=62 Identities=32% Similarity=0.524 Sum_probs=56.4
Q ss_pred HHHHHHhhc----CCCCeeEEE-EEecCCC--CCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 225 EPDLLELFR----PFGAVSRVY-VAVDQKT--GISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 225 e~dL~~lF~----~~G~i~~v~-l~~d~~t--g~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
+++|+++|+ .||.|.++. ++.++.+ +.++|||||.|.+.++|.+|+..|||..++|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 7777777 9999999999999999999999999999999999873
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=3e-12 Score=108.63 Aligned_cols=77 Identities=32% Similarity=0.552 Sum_probs=70.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
..++|||+|||.++.+.+|++||.+||.|..|.|...+ ....||||+|++..+|+.||..-+|+.++|..|+|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 46899999999999999999999999999999985432 356799999999999999999999999999999999986
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=5.8e-12 Score=121.43 Aligned_cols=82 Identities=29% Similarity=0.464 Sum_probs=79.2
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATP 290 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akp 290 (293)
..||||++||+.++.++|.++|+.+|+|..++++.++.++.+|||+||+|...+++++|+..+++..+.|++|+|..|++
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 022742 291 RT 292 (293)
Q Consensus 291 k~ 292 (293)
+.
T Consensus 85 R~ 86 (678)
T KOG0127|consen 85 RA 86 (678)
T ss_pred cc
Confidence 74
No 51
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.6e-11 Score=115.52 Aligned_cols=142 Identities=27% Similarity=0.403 Sum_probs=103.2
Q ss_pred hhhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhc--CCCCCCcCCCCCCCcccCC
Q 022742 124 AAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAA--GATKGTYVPPGMRAGAERT 201 (293)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~yvpp~~r~~~~~~ 201 (293)
..+..|.++|+..+.+++-|+|.+ +.+..|.|..+..+. .++.+.... ....|+-+ |.
T Consensus 10 v~e~~l~~~f~~~~~v~s~rvc~d---~tslgy~yvnf~~~~--------da~~A~~~~n~~~~~~~~~----ri----- 69 (369)
T KOG0123|consen 10 VTEAMLFDKFSPAGPVLSIRVCRD---ATSLGYAYVNFQQPA--------DAERALDTMNFDVLKGKPI----RI----- 69 (369)
T ss_pred CChHHHHHHhcccCCceeEEEeec---CCccceEEEecCCHH--------HHHHHHHHcCCcccCCcEE----Ee-----
Confidence 345689999999999999999983 324445555554421 122222211 11222211 11
Q ss_pred CCccccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 022742 202 GTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNL 281 (293)
Q Consensus 202 ~~~~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~ 281 (293)
|-...+...|||.||+++++..+|.++|+.||.|.+|.++.+.. | ++|| ||.|.+.+.|.+||..|||..+.+.
T Consensus 70 ---m~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k 143 (369)
T KOG0123|consen 70 ---MWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGK 143 (369)
T ss_pred ---ehhccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCC
Confidence 11112223399999999999999999999999999999999854 5 9999 9999999999999999999999999
Q ss_pred EEEEEeccCC
Q 022742 282 ILRVEWATPR 291 (293)
Q Consensus 282 ~L~V~~Akpk 291 (293)
.|.|....++
T Consensus 144 ki~vg~~~~~ 153 (369)
T KOG0123|consen 144 KIYVGLFERK 153 (369)
T ss_pred eeEEeeccch
Confidence 9999877654
No 52
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.26 E-value=2.7e-11 Score=84.36 Aligned_cols=56 Identities=43% Similarity=0.773 Sum_probs=51.0
Q ss_pred HHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 228 LLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 228 L~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
|..+|++||.|.++.+..+. +++|||+|.+.++|+.|++.|||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 689999999999999999999999999999999997
No 53
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=9.8e-12 Score=117.42 Aligned_cols=76 Identities=37% Similarity=0.543 Sum_probs=71.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
..-..|||.||+.+++|+.|+.+|++||.|.+|..++| ||||.|.++++|.+|++.+||+.|+|..|.|.+|
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 34579999999999999999999999999999988866 9999999999999999999999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
||..
T Consensus 329 KP~~ 332 (506)
T KOG0117|consen 329 KPVD 332 (506)
T ss_pred CChh
Confidence 9964
No 54
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.9e-11 Score=115.20 Aligned_cols=160 Identities=27% Similarity=0.364 Sum_probs=122.0
Q ss_pred CchhchhhhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHH----hcCCCCCCcCCCC
Q 022742 118 KPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAA----AAGATKGTYVPPG 193 (293)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~yvpp~ 193 (293)
+..++..+.+.|+++|+.+|+|++|++..+ .+-+... |..+..+. ++..+.. ........|+.+.
T Consensus 82 ~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~--~~g~kg~-FV~f~~e~--------~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 82 KNLDESIDNKSLYDTFSEFGNILSCKVATD--ENGSKGY-FVQFESEE--------SAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred cCCCcccCcHHHHHHHHhhcCeeEEEEEEc--CCCceee-EEEeCCHH--------HHHHHHHHhcCcccCCCeeEEeec
Confidence 456677788999999999999999999763 3334444 66655421 1111211 1223445688887
Q ss_pred CCCcccCCCCccccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHh
Q 022742 194 MRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKL 273 (293)
Q Consensus 194 ~r~~~~~~~~~~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~L 273 (293)
.+...+..+... .......++|.|++.++++..|..+|..+|.|..+.++.+. .|+++||+||.|.+.++|..|++.|
T Consensus 151 ~~~~er~~~~~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 151 ERKEEREAPLGE-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred cchhhhcccccc-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhc
Confidence 776554333333 34557899999999999999999999999999999999885 5779999999999999999999999
Q ss_pred CCceeCCeEEEEEeccC
Q 022742 274 NGYGYDNLILRVEWATP 290 (293)
Q Consensus 274 ng~~i~g~~L~V~~Akp 290 (293)
||..+++..+.|..+..
T Consensus 229 ~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 229 NGKIFGDKELYVGRAQK 245 (369)
T ss_pred cCCcCCccceeeccccc
Confidence 99999999999887765
No 55
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.19 E-value=3.2e-11 Score=108.67 Aligned_cols=137 Identities=24% Similarity=0.373 Sum_probs=98.2
Q ss_pred hhhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCCCCCCcccCCCC
Q 022742 124 AAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPPGMRAGAERTGT 203 (293)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp~~r~~~~~~~~ 203 (293)
.++.+|+.||..+|+++-|-|-+ + .-|..... +. +++.+. ...++ |.-......-..
T Consensus 14 ~~~~elr~lFe~ygkVlECDIvK--N------YgFVHiEd-------kt-aaedai---rNLhg-YtLhg~nInVea--- 70 (346)
T KOG0109|consen 14 ATEQELRSLFEQYGKVLECDIVK--N------YGFVHIED-------KT-AAEDAI---RNLHG-YTLHGVNINVEA--- 70 (346)
T ss_pred cchHHHHHHHHhhCceEeeeeec--c------cceEEeec-------cc-ccHHHH---hhccc-ceecceEEEEEe---
Confidence 44578999999999999999987 2 22333322 11 111111 11222 111111111100
Q ss_pred ccccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 022742 204 DMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLIL 283 (293)
Q Consensus 204 ~~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L 283 (293)
+.......++|+|+||++.++.++|+..|.+||++..|.|++| |+||.|.-.++|..||+.||+..++|++|
T Consensus 71 SksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m 142 (346)
T KOG0109|consen 71 SKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRM 142 (346)
T ss_pred ccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccccccee
Confidence 1111345789999999999999999999999999999999866 99999999999999999999999999999
Q ss_pred EEEeccCC
Q 022742 284 RVEWATPR 291 (293)
Q Consensus 284 ~V~~Akpk 291 (293)
+|+.+..+
T Consensus 143 ~vq~stsr 150 (346)
T KOG0109|consen 143 HVQLSTSR 150 (346)
T ss_pred eeeeeccc
Confidence 99998765
No 56
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.17 E-value=3.2e-11 Score=116.53 Aligned_cols=76 Identities=39% Similarity=0.700 Sum_probs=73.1
Q ss_pred eEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 213 SVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 213 ~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.|||+||..++++++|+.+|++||.|..|.+.+|..||.++||+||+|.+.++|.+|+..|||+.|-|+.|+|..-
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 3999999999999999999999999999999999999999999999999999999999999999999999998754
No 57
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=1.1e-10 Score=110.12 Aligned_cols=82 Identities=28% Similarity=0.448 Sum_probs=74.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCc-ee--CCeEEEE
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGY-GY--DNLILRV 285 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~-~i--~g~~L~V 285 (293)
.+.-.+||+.+|..++|.||+++|++||.|..|.|++|+.|+.++||+||.|.++++|.+|+.+|+.. .| .+.+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 44568999999999999999999999999999999999999999999999999999999999999885 33 3588999
Q ss_pred EeccC
Q 022742 286 EWATP 290 (293)
Q Consensus 286 ~~Akp 290 (293)
.+|..
T Consensus 112 k~Ad~ 116 (510)
T KOG0144|consen 112 KYADG 116 (510)
T ss_pred cccch
Confidence 98864
No 58
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.15 E-value=1.5e-10 Score=107.38 Aligned_cols=158 Identities=22% Similarity=0.314 Sum_probs=113.8
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCCCCCCcccCCCCcc
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPPGMRAGAERTGTDM 205 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp~~r~~~~~~~~~~ 205 (293)
++.|+.-|..++.++.|-+..+.-.--...+.|..+..+.. .............++-+-|...-.. ......
T Consensus 20 ee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~-------v~~vl~~~~h~~dgr~ve~k~av~r-~~~~~~ 91 (311)
T KOG4205|consen 20 EESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEG-------VDAVLNARTHKLDGRSVEPKRAVSR-EDQTKV 91 (311)
T ss_pred HHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcc-------hheeecccccccCCccccceeccCc-cccccc
Confidence 35788888889999999987754333344555555543211 1111111123344544444322111 112222
Q ss_pred ccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 022742 206 RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRV 285 (293)
Q Consensus 206 ~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V 285 (293)
.+......|||++||.++++.+|+++|.+||.|..+.++.|..+.+++||+||+|.+++.+.+++. ..-+.|.++.+.|
T Consensus 92 ~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vev 170 (311)
T KOG4205|consen 92 GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEV 170 (311)
T ss_pred ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeE
Confidence 334467799999999999999999999999999999999999999999999999999999999985 6778999999999
Q ss_pred EeccCCC
Q 022742 286 EWATPRT 292 (293)
Q Consensus 286 ~~Akpk~ 292 (293)
..|.|+.
T Consensus 171 krA~pk~ 177 (311)
T KOG4205|consen 171 KRAIPKE 177 (311)
T ss_pred eeccchh
Confidence 9999874
No 59
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.14 E-value=3.5e-10 Score=111.83 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=67.8
Q ss_pred CCceEEEecCCCC--C--------CHHHHHHhhcCCCCeeEEEEEec---CCCCCeeeEEEEEEcCHHHHHHHHHHhCCc
Q 022742 210 DENSVRVTNLSED--T--------REPDLLELFRPFGAVSRVYVAVD---QKTGISRGFGFVNFVNKEDAQRAINKLNGY 276 (293)
Q Consensus 210 ~~~~v~V~nLp~~--~--------te~dL~~lF~~~G~i~~v~l~~d---~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~ 276 (293)
....|+|.||... + ..++|+++|++||.|..|.|+++ ..++.+.||+||.|.+.++|++||..|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 4678999999632 1 12578999999999999999875 234567899999999999999999999999
Q ss_pred eeCCeEEEEEecc
Q 022742 277 GYDNLILRVEWAT 289 (293)
Q Consensus 277 ~i~g~~L~V~~Ak 289 (293)
.|+|+.|.|.|..
T Consensus 488 ~~~gr~v~~~~~~ 500 (509)
T TIGR01642 488 KFNDRVVVAAFYG 500 (509)
T ss_pred EECCeEEEEEEeC
Confidence 9999999999865
No 60
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=3.6e-11 Score=111.24 Aligned_cols=77 Identities=30% Similarity=0.464 Sum_probs=74.8
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
-++|||+.++..+.|+.|+..|..||+|.+|.+..|+.|++++|||||+|.-++.|+-|++.|||..++||.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999874
No 61
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.13 E-value=1.3e-10 Score=100.36 Aligned_cols=82 Identities=30% Similarity=0.508 Sum_probs=76.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCC-CCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPF-GAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~-G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....-++|..+|..+.+..+..+|.+| |.+.++++.|++.||.++|||||+|.+.+.|+-|.+.||++.+.++.|.+.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 445678999999999999999999988 7889999999999999999999999999999999999999999999999987
Q ss_pred ccC
Q 022742 288 ATP 290 (293)
Q Consensus 288 Akp 290 (293)
=.|
T Consensus 127 mpp 129 (214)
T KOG4208|consen 127 MPP 129 (214)
T ss_pred eCc
Confidence 655
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.12 E-value=8.8e-11 Score=105.87 Aligned_cols=73 Identities=27% Similarity=0.515 Sum_probs=69.4
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 291 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akpk 291 (293)
..|||+|||..+++.+|+.||++||.|..|.|+++ ||||..++...|+.||..|||+.|+|..|+|+-++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46899999999999999999999999999999977 9999999999999999999999999999999999877
Q ss_pred C
Q 022742 292 T 292 (293)
Q Consensus 292 ~ 292 (293)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.11 E-value=8e-11 Score=99.78 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=106.1
Q ss_pred chhhhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHh--cCCCCCCcCCCCCCCccc
Q 022742 122 TKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAA--AGATKGTYVPPGMRAGAE 199 (293)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~yvpp~~r~~~~ 199 (293)
+...+..|.+||-..|.++..++..++-...-....|..+..+.+ ++=+... .-..-|+-+ .-..+
T Consensus 19 ~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eed--------adYAikiln~VkLYgrpI---rv~ka- 86 (203)
T KOG0131|consen 19 EKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEED--------ADYAIKILNMVKLYGRPI---RVNKA- 86 (203)
T ss_pred HHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhh--------hHHHHHHHHHHHhcCcee---EEEec-
Confidence 445567888888878888887777642111111222333333211 1111111 111222211 00111
Q ss_pred CCCCccccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeE-EEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCcee
Q 022742 200 RTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSR-VYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGY 278 (293)
Q Consensus 200 ~~~~~~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~-v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i 278 (293)
+......+-..++||+||.+.++|..|..+|+.||.+.. -.+++++.||.++|||||.|.+.+.+.+||..+||..+
T Consensus 87 --s~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l 164 (203)
T KOG0131|consen 87 --SAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL 164 (203)
T ss_pred --ccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh
Confidence 111122344589999999999999999999999999865 48899999999999999999999999999999999999
Q ss_pred CCeEEEEEeccCCC
Q 022742 279 DNLILRVEWATPRT 292 (293)
Q Consensus 279 ~g~~L~V~~Akpk~ 292 (293)
.++++.|.+++.+.
T Consensus 165 ~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 165 CNRPITVSYAFKKD 178 (203)
T ss_pred cCCceEEEEEEecC
Confidence 99999999998653
No 64
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.10 E-value=2e-10 Score=100.35 Aligned_cols=81 Identities=27% Similarity=0.480 Sum_probs=73.2
Q ss_pred CCCceEEEecCCCCCCHHHHHH----hhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 209 NDENSVRVTNLSEDTREPDLLE----LFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~----lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
.+..||||.||++.+.-++|+. ||++||.|..|...+ |.+.||-|||.|.+.+.|-.|+..|+|+.+-|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999998876 999999999888764 678999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 022742 285 VEWATPRT 292 (293)
Q Consensus 285 V~~Akpk~ 292 (293)
++||+...
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99998764
No 65
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.2e-10 Score=105.74 Aligned_cols=83 Identities=30% Similarity=0.438 Sum_probs=79.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
.++.+.|||-.|++-++.+||.-+|+.||.|..|.|++|+.||.+-.||||+|.+.+++++|.-.|++..|+.+.|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 022742 288 ATP 290 (293)
Q Consensus 288 Akp 290 (293)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 864
No 66
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=2.7e-09 Score=98.97 Aligned_cols=82 Identities=23% Similarity=0.413 Sum_probs=77.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||..+.++.+|+||+.+|+.||+|..|.|.+++.++.++||+|++|.+..+...||..||-+.++|+.|+|..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred cC
Q 022742 289 TP 290 (293)
Q Consensus 289 kp 290 (293)
-.
T Consensus 288 vT 289 (544)
T KOG0124|consen 288 VT 289 (544)
T ss_pred cC
Confidence 43
No 67
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.00 E-value=1.3e-09 Score=105.70 Aligned_cols=84 Identities=26% Similarity=0.398 Sum_probs=77.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|+|++|+..+.-.||+.||++||.|.-..|+.+..+-..++|+||++.+..+|.++|..|+...|.|++|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34567999999999999999999999999999999999987878899999999999999999999999999999999999
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8853
No 68
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.99 E-value=1.8e-09 Score=102.02 Aligned_cols=77 Identities=36% Similarity=0.494 Sum_probs=71.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhc-CCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 210 DENSVRVTNLSEDTREPDLLELFR-PFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~-~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.+||+|||+++..++|++||. +.|.|+.|.|..| .+|++||+|.|+|.++|.+++|++.||.+.+.|+.|.|.-
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 456799999999999999999995 7899999999999 4699999999999999999999999999999999999863
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=1.3e-09 Score=108.29 Aligned_cols=81 Identities=27% Similarity=0.509 Sum_probs=75.9
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
..+.|.|.|||..++-.+++.+|..||.|..|+|+.....+.++|||||.|-+.++|.+|+.+|...-|.||.|.++||+
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 36799999999999999999999999999999998876667889999999999999999999999999999999999997
Q ss_pred C
Q 022742 290 P 290 (293)
Q Consensus 290 p 290 (293)
.
T Consensus 692 ~ 692 (725)
T KOG0110|consen 692 S 692 (725)
T ss_pred c
Confidence 5
No 70
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=1.9e-09 Score=96.43 Aligned_cols=82 Identities=33% Similarity=0.494 Sum_probs=73.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC---CeEEEE
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD---NLILRV 285 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~---g~~L~V 285 (293)
.+.+.|||+-|...-.|+|++.+|..||.|.+|.+.+.++ |.++|+|||.|.+.-+|+.||..|+|..-. ...|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 4678999999999999999999999999999999999865 999999999999999999999999998544 467888
Q ss_pred EeccCC
Q 022742 286 EWATPR 291 (293)
Q Consensus 286 ~~Akpk 291 (293)
.||...
T Consensus 96 K~ADTd 101 (371)
T KOG0146|consen 96 KFADTD 101 (371)
T ss_pred Eeccch
Confidence 888643
No 71
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=9.3e-09 Score=94.85 Aligned_cols=76 Identities=22% Similarity=0.540 Sum_probs=68.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHH-hCCceeCCeEEEEEe
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINK-LNGYGYDNLILRVEW 287 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~-Lng~~i~g~~L~V~~ 287 (293)
....+|||++|...++|.+|++.|.+||.|.++.+... +|+|||+|.+++.|+.|... +|-..|+|++|+|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34579999999999999999999999999999998754 45999999999999998764 566688999999999
Q ss_pred ccC
Q 022742 288 ATP 290 (293)
Q Consensus 288 Akp 290 (293)
+.|
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 998
No 72
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.89 E-value=1.4e-09 Score=101.09 Aligned_cols=82 Identities=33% Similarity=0.469 Sum_probs=76.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
+.+.|||++|+++++++.|++.|.+||.|..|.+++|+.+++++||+||+|.+.+...++|. ..-+.|+|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999999988885 45678999999999988
Q ss_pred CCC
Q 022742 290 PRT 292 (293)
Q Consensus 290 pk~ 292 (293)
|+.
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 874
No 73
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.88 E-value=3.2e-09 Score=106.22 Aligned_cols=75 Identities=25% Similarity=0.589 Sum_probs=70.1
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATP 290 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akp 290 (293)
++||||++|+..++|.||..+|+.||.|.+|.++. +||+|||.+.++++|++|+.+|+.+.+..+.|+|.||.-
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 47999999999999999999999999999998865 478999999999999999999999999999999999974
Q ss_pred C
Q 022742 291 R 291 (293)
Q Consensus 291 k 291 (293)
+
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 3
No 74
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.86 E-value=1.9e-08 Score=88.03 Aligned_cols=84 Identities=23% Similarity=0.399 Sum_probs=70.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEE-ecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC---CeEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVA-VDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD---NLIL 283 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~-~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~---g~~L 283 (293)
+..-+||||++||.++..-+|..||..|-..+.+.|. .++....++-+||++|.+.++|..|+..|||..++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 4567999999999999999999999998666555443 33333456689999999999999999999999998 8999
Q ss_pred EEEeccCC
Q 022742 284 RVEWATPR 291 (293)
Q Consensus 284 ~V~~Akpk 291 (293)
++++|+..
T Consensus 111 hiElAKSN 118 (284)
T KOG1457|consen 111 HIELAKSN 118 (284)
T ss_pred EeeehhcC
Confidence 99999854
No 75
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.78 E-value=1.8e-08 Score=90.47 Aligned_cols=80 Identities=36% Similarity=0.539 Sum_probs=73.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
....|+|.||+..+.++||++||..||.+.++.|..++ +|.+.|.|-|.|...++|.+|++.|||..++|+.|++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34789999999999999999999999999999998885 59999999999999999999999999999999999988755
Q ss_pred C
Q 022742 290 P 290 (293)
Q Consensus 290 p 290 (293)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 4
No 76
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.73 E-value=2.7e-08 Score=98.84 Aligned_cols=83 Identities=28% Similarity=0.468 Sum_probs=74.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCC---CCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQK---TGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~---tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
.+..++|||+||++.++++.|...|+.||+|..+.++..+. ....+-++||.|-++.+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45678999999999999999999999999999999887653 235567999999999999999999999999999999
Q ss_pred EEeccC
Q 022742 285 VEWATP 290 (293)
Q Consensus 285 V~~Akp 290 (293)
+.|+++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999964
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=4.8e-08 Score=97.24 Aligned_cols=78 Identities=33% Similarity=0.479 Sum_probs=70.2
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCC---CeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTG---ISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg---~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
+.|||.||+++++.++|..+|...|.|..+.|...+.-. .+.|||||.|.+.++|+.|++.|+|..|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999887665421 34599999999999999999999999999999999998
Q ss_pred c
Q 022742 289 T 289 (293)
Q Consensus 289 k 289 (293)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 78
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.67 E-value=1.2e-07 Score=87.56 Aligned_cols=80 Identities=25% Similarity=0.330 Sum_probs=73.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCee--------EEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVS--------RVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN 280 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~--------~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g 280 (293)
..++.|||+|||.++|-+++.++|++||.|. +|.|.++.. |+.+|=|.+.|..+++++-||+.|++..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3456799999999999999999999999884 578888855 9999999999999999999999999999999
Q ss_pred eEEEEEecc
Q 022742 281 LILRVEWAT 289 (293)
Q Consensus 281 ~~L~V~~Ak 289 (293)
+.|+|+.|+
T Consensus 211 ~~~rVerAk 219 (382)
T KOG1548|consen 211 KKLRVERAK 219 (382)
T ss_pred cEEEEehhh
Confidence 999999886
No 79
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.66 E-value=1.8e-07 Score=72.70 Aligned_cols=78 Identities=22% Similarity=0.423 Sum_probs=70.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhcC--CCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC----CeEEEE
Q 022742 212 NSVRVTNLSEDTREPDLLELFRP--FGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD----NLILRV 285 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~--~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~----g~~L~V 285 (293)
+||.|.|||-..+.++|.+++.. .|..-.++|+.|..++.+.|||||+|.+.+.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988754 377788999999999999999999999999999999999999876 577888
Q ss_pred Eecc
Q 022742 286 EWAT 289 (293)
Q Consensus 286 ~~Ak 289 (293)
.||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8886
No 80
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.62 E-value=6.2e-08 Score=91.83 Aligned_cols=76 Identities=29% Similarity=0.368 Sum_probs=69.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||.|||.++|.+.|++-|..||.|..+.|+. .|+++| .|.|.++++|++|+..|||..++|+.|.|.|
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 34568999999999999999999999999999888853 488887 8999999999999999999999999999987
Q ss_pred c
Q 022742 288 A 288 (293)
Q Consensus 288 A 288 (293)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 4
No 81
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.61 E-value=4.2e-08 Score=87.26 Aligned_cols=80 Identities=25% Similarity=0.458 Sum_probs=75.3
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 207 RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 207 ~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
...+...||.+.|.-+++.+.|-..|.+|-......++++..||+++||+||.|.+..++.+|+..|||..++.++|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999998765
No 82
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.55 E-value=1.3e-07 Score=84.77 Aligned_cols=81 Identities=26% Similarity=0.329 Sum_probs=76.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.+.+||+|+...++-+++...|..||.|.++.+..++.+|.++|||||+|.+.+.++.|+. |||..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4577899999999999998899999999999999999999999999999999999999999998 999999999999987
Q ss_pred cc
Q 022742 288 AT 289 (293)
Q Consensus 288 Ak 289 (293)
.+
T Consensus 177 ~r 178 (231)
T KOG4209|consen 177 KR 178 (231)
T ss_pred ee
Confidence 65
No 83
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.51 E-value=3e-07 Score=88.69 Aligned_cols=83 Identities=31% Similarity=0.434 Sum_probs=69.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
.....+|||.|||.++++.+|.++|.+||.|....|....-.++..+||||+|.+...++.||.+ +-..+++++|.|+-
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 34456799999999999999999999999998877755332244449999999999999999985 57789999999997
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
-++.
T Consensus 364 k~~~ 367 (419)
T KOG0116|consen 364 KRPG 367 (419)
T ss_pred cccc
Confidence 7664
No 84
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.43 E-value=1.9e-07 Score=82.23 Aligned_cols=71 Identities=31% Similarity=0.489 Sum_probs=65.9
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATP 290 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akp 290 (293)
..+||++||+.+.+.+|..||..||.+..+.+. .||+||.|.+..+|..|+.-|||..|.|..+.|+|++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 468999999999999999999999999988774 46999999999999999999999999998899999985
No 85
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=1.9e-07 Score=81.51 Aligned_cols=78 Identities=24% Similarity=0.237 Sum_probs=70.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||.||...++|+-|.+||-+-|+|.+|.|..++. +..+ ||||.|.++-+..-|++.|||..+.+..|.+.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4468999999999999999999999999999999988765 6666 9999999999999999999999998888777653
No 86
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.26 E-value=1.7e-06 Score=80.52 Aligned_cols=106 Identities=23% Similarity=0.370 Sum_probs=87.1
Q ss_pred CCcCCCCCCCcccCCCCccccCCCCceEEEecCCCCCCHHHHHHhhcCCCCee--------EEEEEecCCCCCeeeEEEE
Q 022742 187 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVS--------RVYVAVDQKTGISRGFGFV 258 (293)
Q Consensus 187 g~yvpp~~r~~~~~~~~~~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~--------~v~l~~d~~tg~~rGfAFV 258 (293)
+.|.+-.+..+.......+.......+|||.+||..+++++|.++|.++|.|. .|.|-++++|+.++|-|.|
T Consensus 42 gg~~gg~m~~g~~~~~~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatv 121 (351)
T KOG1995|consen 42 GGYGGGPMSSGNRGDASSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATV 121 (351)
T ss_pred CCCCCCCcCCCCCcCcCccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceee
Confidence 34444343333332234444566778999999999999999999999999873 5788899999999999999
Q ss_pred EEcCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 022742 259 NFVNKEDAQRAINKLNGYGYDNLILRVEWATPRT 292 (293)
Q Consensus 259 ~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akpk~ 292 (293)
+|.+...|+.||.-+++..+.+..|+|..|..++
T Consensus 122 S~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 122 SYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred eecChhhhhhhhhhhccccccCCCchhhhhhhcc
Confidence 9999999999999999999999999999887665
No 87
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.25 E-value=8.7e-07 Score=81.78 Aligned_cols=82 Identities=22% Similarity=0.427 Sum_probs=64.7
Q ss_pred CCCceEEEecCCCCCCHHH----HH--HhhcCCCCeeEEEEEecCCCC-CeeeEE--EEEEcCHHHHHHHHHHhCCceeC
Q 022742 209 NDENSVRVTNLSEDTREPD----LL--ELFRPFGAVSRVYVAVDQKTG-ISRGFG--FVNFVNKEDAQRAINKLNGYGYD 279 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~d----L~--~lF~~~G~i~~v~l~~d~~tg-~~rGfA--FV~F~~~e~A~~Ai~~Lng~~i~ 279 (293)
-+.+-+||-+||+.+..++ |+ ++|++||.|..|.+.+...+. ...+.+ ||+|.+.++|.+||...+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3457899999999876655 43 899999999988876543111 122334 99999999999999999999999
Q ss_pred CeEEEEEeccC
Q 022742 280 NLILRVEWATP 290 (293)
Q Consensus 280 g~~L~V~~Akp 290 (293)
|+.|+..|...
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999988753
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.23 E-value=8.3e-07 Score=86.86 Aligned_cols=84 Identities=27% Similarity=0.388 Sum_probs=79.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....+.+||++||...++..+.+++..||++....++.+..+|.++||||.+|.+......|+..|||+.+++..|.|+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
|.+-
T Consensus 366 A~~g 369 (500)
T KOG0120|consen 366 AIVG 369 (500)
T ss_pred hhcc
Confidence 8653
No 89
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=8.2e-07 Score=86.54 Aligned_cols=72 Identities=26% Similarity=0.438 Sum_probs=64.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
....++|+|.|||..+++++|.++|+.||+|..|+. |-..+|..||+|.+..+|++|++.||+..+.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345789999999999999999999999999988544 455689999999999999999999999999988776
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.14 E-value=7.5e-06 Score=78.95 Aligned_cols=78 Identities=21% Similarity=0.376 Sum_probs=66.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.....|++.+|||++|+++|.++|+.++ |.++.+. +.+|+..|-|||+|.+.+++++|++ .+...+.++-|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 4567899999999999999999999986 7665554 4589999999999999999999997 6888889999988655
Q ss_pred cC
Q 022742 289 TP 290 (293)
Q Consensus 289 kp 290 (293)
.+
T Consensus 84 ~~ 85 (510)
T KOG4211|consen 84 GG 85 (510)
T ss_pred CC
Confidence 43
No 91
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.10 E-value=2.3e-05 Score=74.10 Aligned_cols=74 Identities=27% Similarity=0.392 Sum_probs=68.1
Q ss_pred CceEEEecCCCC-CCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 211 ENSVRVTNLSED-TREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 211 ~~~v~V~nLp~~-~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
...|-|+||.+. ++.+-|..+|+-||.|.+|.|..++. --|.|.|.+...|+-|+..|+|+.+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 678999999876 78899999999999999999998754 369999999999999999999999999999999987
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.01 E-value=3.2e-06 Score=78.11 Aligned_cols=82 Identities=27% Similarity=0.417 Sum_probs=75.5
Q ss_pred CCceEE-EecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 210 DENSVR-VTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 210 ~~~~v~-V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++| |+||+..+++++|+..|..+|.|..+++..++.++.++|||||.|.....+..++.. +...+.++.+.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344555 999999999999999999999999999999999999999999999999999999976 888999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
.|++
T Consensus 262 ~~~~ 265 (285)
T KOG4210|consen 262 EPRP 265 (285)
T ss_pred CCCc
Confidence 8875
No 93
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.97 E-value=8.7e-05 Score=65.30 Aligned_cols=77 Identities=21% Similarity=0.410 Sum_probs=68.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD-NLILRVE 286 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~-g~~L~V~ 286 (293)
..+...+|+.|||..++.+.|..+|.+|.....++++..+ .+.|||+|.+...|..|...|+|..|- ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4567899999999999999999999999999999988653 579999999999999999999999887 7888888
Q ss_pred ecc
Q 022742 287 WAT 289 (293)
Q Consensus 287 ~Ak 289 (293)
+|+
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 875
No 94
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.92 E-value=2.9e-06 Score=82.65 Aligned_cols=81 Identities=25% Similarity=0.376 Sum_probs=75.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++||+..|+..+++-+|.++|+.+|.|..|+++.|+.++.++|.|||.|.+.+....|| .|.|..+.|.+|.|+.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 456789999999999999999999999999999999999999999999999999999999999 5999999999999986
Q ss_pred cc
Q 022742 288 AT 289 (293)
Q Consensus 288 Ak 289 (293)
..
T Consensus 255 sE 256 (549)
T KOG0147|consen 255 SE 256 (549)
T ss_pred cH
Confidence 54
No 95
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.83 E-value=4.3e-05 Score=73.84 Aligned_cols=78 Identities=24% Similarity=0.412 Sum_probs=65.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeE-EEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSR-VYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~-v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
.....|++.+||+.|+++||.++|+..-.+.. |.++.++. +++.|-|||.|.+.+.|++||.. |...|+++-|.|-.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 35679999999999999999999998766654 66777754 78999999999999999999974 77788888888754
Q ss_pred c
Q 022742 288 A 288 (293)
Q Consensus 288 A 288 (293)
|
T Consensus 179 S 179 (510)
T KOG4211|consen 179 S 179 (510)
T ss_pred h
Confidence 4
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.82 E-value=8.1e-05 Score=55.98 Aligned_cols=68 Identities=25% Similarity=0.327 Sum_probs=47.9
Q ss_pred ceEEEecCCCCCCHHH----HHHhhcCCC-CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 212 NSVRVTNLSEDTREPD----LLELFRPFG-AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 212 ~~v~V~nLp~~~te~d----L~~lF~~~G-~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
..|+|.|||.+.+... |+.|+..|| .|..| . .+-|+|.|.+.+.|.+|.+.|+|-.+-|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5799999999998765 567787886 45443 1 2569999999999999999999999999999999
Q ss_pred ecc
Q 022742 287 WAT 289 (293)
Q Consensus 287 ~Ak 289 (293)
|..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.65 E-value=5.3e-05 Score=66.71 Aligned_cols=66 Identities=21% Similarity=0.365 Sum_probs=55.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD 279 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~ 279 (293)
-..+|||.||..+++|++|+.+|+.|.....++|.. + .|. ..||+.|...+.|..|+..|+|..|.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~-~g~--~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-R-GGM--PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-C-CCc--ceEeecHHHHHHHHHHHHHhhcceec
Confidence 356999999999999999999999998777777642 2 233 47999999999999999999998764
No 98
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.48 E-value=0.00056 Score=65.00 Aligned_cols=78 Identities=19% Similarity=0.292 Sum_probs=65.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC-eEEEEEe
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN-LILRVEW 287 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g-~~L~V~~ 287 (293)
++..++..+|+|.+++|++|+.+|..-|-....+..- ++.+-+|++.+.+.+.|-.|+-.++.+.++. ..|+|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 5567999999999999999999999888765544322 2345599999999999999999999998875 5999999
Q ss_pred ccC
Q 022742 288 ATP 290 (293)
Q Consensus 288 Akp 290 (293)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 985
No 99
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.43 E-value=8.6e-05 Score=65.63 Aligned_cols=71 Identities=38% Similarity=0.513 Sum_probs=62.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
...+.+.|.||+..+.+.+|.+.|.++|.+....+ .++++||.|...++|.+||..|+|..+.++.|.+..
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 45678999999999999999999999999954333 356999999999999999999999999999999844
No 100
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00026 Score=69.52 Aligned_cols=75 Identities=27% Similarity=0.468 Sum_probs=61.5
Q ss_pred CceEEEecCCCCCCH------HHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC-CeEE
Q 022742 211 ENSVRVTNLSEDTRE------PDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD-NLIL 283 (293)
Q Consensus 211 ~~~v~V~nLp~~~te------~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~-g~~L 283 (293)
...|+|.|+|---.. .-|..+|+++|++..++++.+..+| ++||.|++|.+..+|+.|++.|||+.|+ ++.+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 467888888864321 2356889999999999999887654 9999999999999999999999999887 5666
Q ss_pred EEE
Q 022742 284 RVE 286 (293)
Q Consensus 284 ~V~ 286 (293)
.|.
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 654
No 101
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.42 E-value=0.00044 Score=54.59 Aligned_cols=58 Identities=33% Similarity=0.483 Sum_probs=38.3
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCC
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNG 275 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng 275 (293)
+.|+|.+++..++-++|+++|++||.|..|.+.+.- --|||.|.+.+.|+.|+..+.-
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHh
Confidence 568999999999999999999999999998886542 2699999999999999987643
No 102
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.42 E-value=9.9e-05 Score=66.10 Aligned_cols=73 Identities=25% Similarity=0.367 Sum_probs=62.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCC--------CCeee----EEEEEEcCHHHHHHHHHHhCCce
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKT--------GISRG----FGFVNFVNKEDAQRAINKLNGYG 277 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~t--------g~~rG----fAFV~F~~~e~A~~Ai~~Lng~~ 277 (293)
..-.||+++||+.+....|+++|+.||.|-+|+|.....+ |..++ -|+|+|.+...|.+....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3468999999999999999999999999999999877655 33333 35699999999999999999999
Q ss_pred eCCeE
Q 022742 278 YDNLI 282 (293)
Q Consensus 278 i~g~~ 282 (293)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 103
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.32 E-value=0.0021 Score=60.61 Aligned_cols=79 Identities=22% Similarity=0.201 Sum_probs=70.0
Q ss_pred ccCCCCceEEEecCCCC-CCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 206 RRRNDENSVRVTNLSED-TREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 206 ~~~~~~~~v~V~nLp~~-~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
....+.+.+.|.+|... ++-+.|..+|-.||.|.+|.+++.+ .|-|.|++.+....++|+..||+..+-|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 34567889999999887 5567899999999999999998764 46799999999999999999999999999999
Q ss_pred EEecc
Q 022742 285 VEWAT 289 (293)
Q Consensus 285 V~~Ak 289 (293)
|.+++
T Consensus 357 v~~Sk 361 (494)
T KOG1456|consen 357 VCVSK 361 (494)
T ss_pred Eeecc
Confidence 99887
No 104
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.21 E-value=0.00072 Score=46.64 Aligned_cols=52 Identities=25% Similarity=0.541 Sum_probs=41.9
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHH
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAI 270 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai 270 (293)
+.|-|++.+.+..+..| ..|..||+|..+.+... .-+.||.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 57889999987765544 58888999999888622 338999999999999985
No 105
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=97.20 E-value=0.00014 Score=67.42 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=63.9
Q ss_pred CCceEEEecCCCCCCH-HHHH--HhhcCCCCeeEEEEEecCC----CCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 022742 210 DENSVRVTNLSEDTRE-PDLL--ELFRPFGAVSRVYVAVDQK----TGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLI 282 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te-~dL~--~lF~~~G~i~~v~l~~d~~----tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~ 282 (293)
..+-+||-+|+..... ..|+ +.|++||.|..|.+.+++. .+.+ .-++|+|...++|..||...+|..++|+.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 3467888899987654 4554 7899999999998888762 1211 23799999999999999999999999999
Q ss_pred EEEEeccCC
Q 022742 283 LRVEWATPR 291 (293)
Q Consensus 283 L~V~~Akpk 291 (293)
|+..+..++
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 888777654
No 106
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.03 E-value=0.00043 Score=64.58 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=64.7
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCC--CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFG--AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRV 285 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G--~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V 285 (293)
.-.+||+||-|.++++||.+.+...| .+..+.+..++.+|+++|||+|...+....++-++.|.-..|+|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 35799999999999999988877665 4667788889999999999999999999999999999999999865443
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.02 E-value=0.0037 Score=58.96 Aligned_cols=77 Identities=29% Similarity=0.351 Sum_probs=62.7
Q ss_pred CCceEEEecC--CCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC-C-eEEEE
Q 022742 210 DENSVRVTNL--SEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD-N-LILRV 285 (293)
Q Consensus 210 ~~~~v~V~nL--p~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~-g-~~L~V 285 (293)
....|.++=| -+-++-+-|..+....|+|.+|.|.+. +|. .|.|+|++.+.|++|-..|||..|. | -.|+|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 3445555544 445788899999999999999998865 444 5999999999999999999998664 4 78999
Q ss_pred EeccCC
Q 022742 286 EWATPR 291 (293)
Q Consensus 286 ~~Akpk 291 (293)
+||+|-
T Consensus 194 eyAkP~ 199 (494)
T KOG1456|consen 194 EYAKPT 199 (494)
T ss_pred EecCcc
Confidence 999985
No 108
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.99 E-value=0.0032 Score=49.22 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=52.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEE-EEecC------CCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC-e
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVY-VAVDQ------KTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN-L 281 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~-l~~d~------~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g-~ 281 (293)
..+.|.|-+.|+.. ...+-+.|++||.|.+.. +.++. ..-....+-.|.|.++.+|++||. .||..+.| .
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 45678899999984 456778999999997664 10000 001123488999999999999997 69999987 5
Q ss_pred EEEEEeccC
Q 022742 282 ILRVEWATP 290 (293)
Q Consensus 282 ~L~V~~Akp 290 (293)
.+-|.|.++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 666777653
No 109
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.92 E-value=0.0029 Score=59.08 Aligned_cols=77 Identities=26% Similarity=0.349 Sum_probs=61.4
Q ss_pred CCCCceEEEecCCC----CCC-------HHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCc
Q 022742 208 RNDENSVRVTNLSE----DTR-------EPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGY 276 (293)
Q Consensus 208 ~~~~~~v~V~nLp~----~~t-------e~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~ 276 (293)
....++|.+.||-. ..+ .++|++-..+||+|.+|.|.- ..+.|.+-|.|.+.+.|..||+.|+|.
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 44567899998732 122 345666688999999988752 346789999999999999999999999
Q ss_pred eeCCeEEEEEec
Q 022742 277 GYDNLILRVEWA 288 (293)
Q Consensus 277 ~i~g~~L~V~~A 288 (293)
.++||.|..+..
T Consensus 338 ~fdgRql~A~i~ 349 (382)
T KOG1548|consen 338 WFDGRQLTASIW 349 (382)
T ss_pred eecceEEEEEEe
Confidence 999999988753
No 110
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.75 E-value=0.0051 Score=62.11 Aligned_cols=75 Identities=21% Similarity=0.379 Sum_probs=66.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCee-EEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVS-RVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~-~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
+.|-+.|+|.+++-+||.++|.-|-.+. +|.+.++ +.|...|-+.|.|++.+.|.+|...|++..|.++.+.+..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4888999999999999999999997664 4555444 5699999999999999999999999999999999998864
No 111
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.57 E-value=0.012 Score=48.87 Aligned_cols=72 Identities=26% Similarity=0.381 Sum_probs=51.2
Q ss_pred CCceEEEecCCC------CCCH---HHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC
Q 022742 210 DENSVRVTNLSE------DTRE---PDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN 280 (293)
Q Consensus 210 ~~~~v~V~nLp~------~~te---~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g 280 (293)
+..||.|.=+.+ ...+ .+|-+.|..||.+.-++++.+ --+|+|.+-++|.+|+. |+|..+.|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 445677765551 2222 246677889999888887654 37999999999999996 89999999
Q ss_pred eEEEEEeccC
Q 022742 281 LILRVEWATP 290 (293)
Q Consensus 281 ~~L~V~~Akp 290 (293)
+.|+|....|
T Consensus 97 ~~l~i~LKtp 106 (146)
T PF08952_consen 97 RTLKIRLKTP 106 (146)
T ss_dssp EEEEEEE---
T ss_pred EEEEEEeCCc
Confidence 9999987665
No 112
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.41 E-value=0.022 Score=49.11 Aligned_cols=64 Identities=31% Similarity=0.426 Sum_probs=56.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD 279 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~ 279 (293)
.....|.|++||...+.+||++....-|.|....+.+| |.+.|.|...++.+-|+..|....+.
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 44568889999999999999999999999988888776 47999999999999999999876543
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.35 E-value=0.011 Score=58.40 Aligned_cols=62 Identities=29% Similarity=0.390 Sum_probs=50.8
Q ss_pred HHHHhhcCCCCeeEEEEEecCCC---CCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 227 DLLELFRPFGAVSRVYVAVDQKT---GISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 227 dL~~lF~~~G~i~~v~l~~d~~t---g~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
+++.-+++||.|..|.+.++... .-..|--||+|.+.+++++|++.|+|..|.|+.+...|-
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 34555789999999999887222 233566799999999999999999999999999988874
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.29 E-value=0.00037 Score=71.38 Aligned_cols=70 Identities=29% Similarity=0.393 Sum_probs=60.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD 279 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~ 279 (293)
+..++||+||+..+.+.+|...|..+|.+..+.+......++.||+||+.|...+++.+||....+..++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 4568999999999999999999999999888777666678999999999999999999999765554443
No 115
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.0093 Score=58.37 Aligned_cols=66 Identities=26% Similarity=0.328 Sum_probs=60.9
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhc-CCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHH
Q 022742 207 RRNDENSVRVTNLSEDTREPDLLELFR-PFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINK 272 (293)
Q Consensus 207 ~~~~~~~v~V~nLp~~~te~dL~~lF~-~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~ 272 (293)
.-+..+||||++||.-++-++|-.+|. -||.|..+-|-.|++-+.++|-|-|+|.+-+.--+||.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 356778999999999999999999998 899999999999988899999999999999999999974
No 116
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.23 E-value=0.023 Score=42.85 Aligned_cols=55 Identities=29% Similarity=0.547 Sum_probs=42.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhC
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLN 274 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Ln 274 (293)
.+..+|+ .|......||.++|+.||.|. |.++.| | -|||...+++.|..++..++
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d--T-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND--T-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT--T-----EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC--C-----cEEEEeecHHHHHHHHHHhc
Confidence 4566776 999999999999999999985 666655 2 59999999999999998876
No 117
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.18 E-value=0.004 Score=59.59 Aligned_cols=74 Identities=26% Similarity=0.385 Sum_probs=59.6
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCC-CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCc-eeCCeEEEEEecc
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFG-AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGY-GYDNLILRVEWAT 289 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G-~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~-~i~g~~L~V~~Ak 289 (293)
+.+|++||++.++.++|..+|+..- +...-+++. .|||||.+.+...|.+|++.|+|. .+.|.++.++.+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4689999999999999999997541 112223332 479999999999999999999997 7889999999887
Q ss_pred CCC
Q 022742 290 PRT 292 (293)
Q Consensus 290 pk~ 292 (293)
|+.
T Consensus 75 ~kk 77 (584)
T KOG2193|consen 75 PKK 77 (584)
T ss_pred hHH
Confidence 653
No 118
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.10 E-value=0.0072 Score=57.94 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=57.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEec---CCCC--Ce--------eeEEEEEEcCHHHHHHHHHHhC
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD---QKTG--IS--------RGFGFVNFVNKEDAQRAINKLN 274 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d---~~tg--~~--------rGfAFV~F~~~e~A~~Ai~~Ln 274 (293)
.-+.++|.+-|||.+-.-+.|..+|+.+|.|..|+|... +.++ .+ +-+|||+|...+.|.+|.+.||
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 457899999999999988999999999999999999876 3322 22 4579999999999999998775
Q ss_pred C
Q 022742 275 G 275 (293)
Q Consensus 275 g 275 (293)
-
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.07 E-value=0.0057 Score=57.88 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=62.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCe---eEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAV---SRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i---~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
...|++.+||+..+-+||-.+|..|..- .-|.++.+. .|++.|-|||.|.+.++|..|....+.....++.|.|--
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 5689999999999999999999988642 236777774 599999999999999999999988777666678777643
No 120
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.00 E-value=0.02 Score=54.26 Aligned_cols=62 Identities=32% Similarity=0.417 Sum_probs=50.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCC----CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHH
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFG----AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINK 272 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G----~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~ 272 (293)
+.-.|+..+||.++++.++.++|.+-. ....|.++..+ .|+..|-|||.|..+++|+.||.+
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH
Confidence 456788899999999999999997543 33456555543 589999999999999999999975
No 121
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.033 Score=54.63 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=49.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCC---CCCeee---EEEEEEcCHHHHHHHHHHhC
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQK---TGISRG---FGFVNFVNKEDAQRAINKLN 274 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~---tg~~rG---fAFV~F~~~e~A~~Ai~~Ln 274 (293)
+.-.+.|||++||++++|+.|...|..||.+. |.+....+ --.++| |+|+.|.++..++.-|.+..
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 34568999999999999999999999999874 44432111 113456 99999999998887776543
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.88 E-value=0.011 Score=61.19 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=67.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC--eEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN--LILRV 285 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g--~~L~V 285 (293)
....+.++|++|..++....|...|..||.|..|.+- .|. -||+|.|.+...++.|+..|-|..|++ +.|+|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hgq--~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HGQ--PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cCC--cceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 4567899999999999999999999999999987663 233 499999999999999999999999985 78999
Q ss_pred EeccC
Q 022742 286 EWATP 290 (293)
Q Consensus 286 ~~Akp 290 (293)
.||.+
T Consensus 526 dla~~ 530 (975)
T KOG0112|consen 526 DLASP 530 (975)
T ss_pred ccccC
Confidence 99875
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.86 E-value=0.0036 Score=64.38 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=70.4
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATP 290 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akp 290 (293)
...|+|+|+|...+.+.|+.++..+|.+.+++++..+. |+++|.|||.|.+..++.+++...++..+.-..+.|..+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 46899999999999999999999999999998888764 99999999999999999999988888888777777776554
No 124
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.78 E-value=0.0038 Score=56.15 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=50.0
Q ss_pred HHHHhhc-CCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 227 DLLELFR-PFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 227 dL~~lF~-~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
+|...|+ +||.|..+.|..+.. -.-.|-+||.|...++|++|++.||+..|.|++|..++.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3333344 899999887765532 456888999999999999999999999999999998875
No 125
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.42 E-value=0.053 Score=46.69 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=50.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcC-CCCe---eEEEEEecCC-C-CCeeeEEEEEEcCHHHHHHHHHHhCCceeC---
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRP-FGAV---SRVYVAVDQK-T-GISRGFGFVNFVNKEDAQRAINKLNGYGYD--- 279 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~-~G~i---~~v~l~~d~~-t-g~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~--- 279 (293)
.....|-|.+||++++++++.+.++. ++.. ..+.-..... . .....-|||.|.+.+++..-+..++|+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45679999999999999999987776 6655 2222111111 1 122456999999999999999999998664
Q ss_pred C--eEEEEEec
Q 022742 280 N--LILRVEWA 288 (293)
Q Consensus 280 g--~~L~V~~A 288 (293)
| .+..|++|
T Consensus 85 g~~~~~~VE~A 95 (176)
T PF03467_consen 85 GNEYPAVVEFA 95 (176)
T ss_dssp S-EEEEEEEE-
T ss_pred CCCcceeEEEc
Confidence 2 45566665
No 126
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.35 E-value=0.014 Score=58.12 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=62.4
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhcC-CCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCcee---CCeE
Q 022742 207 RRNDENSVRVTNLSEDTREPDLLELFRP-FGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGY---DNLI 282 (293)
Q Consensus 207 ~~~~~~~v~V~nLp~~~te~dL~~lF~~-~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i---~g~~ 282 (293)
+...++.|+|.||-.-.|.-+|++|+++ .|.|... ++ | +-+..|||.|.+.++|...+.+|||..+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 4567889999999999999999999995 5555554 33 3 2466899999999999999999999865 4688
Q ss_pred EEEEecc
Q 022742 283 LRVEWAT 289 (293)
Q Consensus 283 L~V~~Ak 289 (293)
|.+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8888865
No 127
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.21 E-value=0.057 Score=49.67 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=50.5
Q ss_pred HHHHHhhcCCCCeeEEEEEecCCCCCee-eEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 226 PDLLELFRPFGAVSRVYVAVDQKTGISR-GFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 226 ~dL~~lF~~~G~i~~v~l~~d~~tg~~r-GfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
+++.+-+++||.|.+|.|...+..-... ---||.|...++|-+|+--|||..|+|+.++..|-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4567888999999998887664322111 23699999999999999999999999999998874
No 128
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.17 E-value=0.022 Score=51.32 Aligned_cols=62 Identities=29% Similarity=0.453 Sum_probs=55.5
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhC
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLN 274 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Ln 274 (293)
..|||.||+..++-+.|.+-|+.||+|.+..+..| ..++..+-++|.|...-.|..|+..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 78999999999999999999999999988777666 358888999999999999999998774
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.79 E-value=0.04 Score=55.91 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=66.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeE-EEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSR-VYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~-v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
..-...|||..||..+.+.++..+|.....|+. |+|.+.+ +++.++-|||.|...+.+..|+..-+-+.++++.|+|+
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 345679999999999999999999988777765 8887765 58889999999999888888876556667888999997
Q ss_pred ec
Q 022742 287 WA 288 (293)
Q Consensus 287 ~A 288 (293)
-.
T Consensus 510 si 511 (944)
T KOG4307|consen 510 SI 511 (944)
T ss_pred ch
Confidence 43
No 130
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.57 E-value=0.07 Score=50.82 Aligned_cols=73 Identities=16% Similarity=0.288 Sum_probs=57.3
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCC---CCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKT---GISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRV 285 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~t---g~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V 285 (293)
..|.|.||.+.++.++++.||+-.|.|..+.|..+... ....-.|||-|.+...+..|.. |-.+.+-++.|-|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 48999999999999999999999999999988764332 2345689999999999988875 5555555544444
No 131
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.75 E-value=0.3 Score=34.80 Aligned_cols=55 Identities=24% Similarity=0.286 Sum_probs=44.0
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCC---CCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHh
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPF---GAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKL 273 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~---G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~L 273 (293)
...|+|.++.. ++.++++.+|..| ....+|.++-|. -+=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 35789999854 7788999999888 234588888773 3789999999999999765
No 132
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.65 E-value=0.047 Score=55.05 Aligned_cols=70 Identities=21% Similarity=0.177 Sum_probs=59.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
.++.-++||+|+...+..+-+..++..+|.|..+.... |||..|..+.-..+|+..|+-..++|..|.+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 35567999999999999999999999999987665432 99999999999999999999888888766543
No 133
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.47 E-value=0.12 Score=51.18 Aligned_cols=80 Identities=23% Similarity=0.432 Sum_probs=60.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhc----------------------------CCCCeeEEEEEecCCCCCeeeEEEEEEc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFR----------------------------PFGAVSRVYVAVDQKTGISRGFGFVNFV 261 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~----------------------------~~G~i~~v~l~~d~~tg~~rGfAFV~F~ 261 (293)
...++-|.||+......+|..+.. ..|.-..++|+.|-.+...-|||||.|.
T Consensus 360 ~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~ 439 (549)
T KOG4660|consen 360 RRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMT 439 (549)
T ss_pred chhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeec
Confidence 345666777776666666555443 2455567889999888888999999999
Q ss_pred CHHHHHHHHHHhCCceeC----CeEEEEEecc
Q 022742 262 NKEDAQRAINKLNGYGYD----NLILRVEWAT 289 (293)
Q Consensus 262 ~~e~A~~Ai~~Lng~~i~----g~~L~V~~Ak 289 (293)
+.+.+..+.+++||..+. .++..+.||+
T Consensus 440 sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 440 SPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred CHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 999999999999998654 4667777775
No 134
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.95 E-value=0.087 Score=51.29 Aligned_cols=76 Identities=20% Similarity=0.324 Sum_probs=60.2
Q ss_pred CCCceEEEecCCCCCC-HHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 209 NDENSVRVTNLSEDTR-EPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~t-e~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
.+.+.+-+.-.+.... ..+|...|.+||.|..|.+-.. .-.|.|+|.+..+|-.|-. .++..|+|+.|+|-|
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEE
Confidence 3455666666666654 4789999999999999887443 2368999999999977764 799999999999999
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
-+|.
T Consensus 443 hnps 446 (526)
T KOG2135|consen 443 HNPS 446 (526)
T ss_pred ecCC
Confidence 8884
No 135
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.84 E-value=0.43 Score=44.21 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=49.6
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLI 282 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~ 282 (293)
...|-|-++|+.-. .-|-.+|.+||.|....... .-.+-+|.|.++-+|++||. .||..|+|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 56777888988654 34567899999997654432 23489999999999999997 5999998754
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.84 E-value=0.023 Score=58.92 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=65.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
..++||++||+..+++.+|+..|..+|.|.+|.|-..+. +.-.-||||.|.+...+..|...+.+..|..-.+++.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 457999999999999999999999999999998865532 4445599999999999999999999987775555555553
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.22 E-value=0.63 Score=33.98 Aligned_cols=59 Identities=24% Similarity=0.347 Sum_probs=35.3
Q ss_pred CCCCHHHHHHhhcCCCC-----eeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 221 EDTREPDLLELFRPFGA-----VSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 221 ~~~te~dL~~lF~~~G~-----i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
..++..+|..++...+. |-+|.+..+ |+||+-.. +.|..++..|++..+.|+.|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45677888888766644 446666543 89998865 4889999999999999999999875
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.13 E-value=0.4 Score=41.60 Aligned_cols=60 Identities=28% Similarity=0.294 Sum_probs=44.2
Q ss_pred HHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhC--CceeCCeEEEEEeccC
Q 022742 225 EPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLN--GYGYDNLILRVEWATP 290 (293)
Q Consensus 225 e~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Ln--g~~i~g~~L~V~~Akp 290 (293)
...|+.+|..|+.+......+. -+-..|.|.+.+.|.+|...|+ +..+.|..|++-|+.+
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4678999999998877766543 2347899999999999999999 9999999999998864
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.45 E-value=2.6 Score=33.48 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=47.6
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCC-CCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPF-GAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN 280 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~-G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g 280 (293)
..+.+...|..+.-++|..+.+.+ ..|..++++++. ...+=.+.+.|.+.++|..-...+||..++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 334444445555556676555555 456788998873 2356678899999999999999999998764
No 140
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.84 E-value=1.7 Score=36.27 Aligned_cols=74 Identities=19% Similarity=0.346 Sum_probs=56.0
Q ss_pred CCCCceEEEecCCCCCCH-HHHH---HhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 022742 208 RNDENSVRVTNLSEDTRE-PDLL---ELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLIL 283 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te-~dL~---~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L 283 (293)
..+-.+|.|.=|..++.. +||+ ..++.||+|.+|.+. | +--|.|.|.+..+|=.|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 355678989888777654 5555 446789999998774 2 33599999999999999998775 5567778
Q ss_pred EEEecc
Q 022742 284 RVEWAT 289 (293)
Q Consensus 284 ~V~~Ak 289 (293)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 887754
No 141
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=88.51 E-value=0.24 Score=45.89 Aligned_cols=79 Identities=16% Similarity=0.046 Sum_probs=63.6
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
..+++|++++.+.+.+.++..++..+|......+........++|++++.|...+.+..|+.....+.+.+..+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4689999999999999988899999998877777666678899999999999999999999743334666555544443
No 142
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=87.52 E-value=0.4 Score=29.50 Aligned_cols=20 Identities=50% Similarity=1.286 Sum_probs=17.1
Q ss_pred eEEeeeCCCCCCCccccCCcc
Q 022742 139 LMVCRTCGKKGDHWTSRCPFK 159 (293)
Q Consensus 139 ~~~Cr~C~~~g~h~t~~cP~k 159 (293)
...|++|+.+| ||-..||-.
T Consensus 8 ~Y~C~~C~~~G-H~i~dCP~~ 27 (32)
T PF13696_consen 8 GYVCHRCGQKG-HWIQDCPTN 27 (32)
T ss_pred CCEeecCCCCC-ccHhHCCCC
Confidence 46899999866 999999974
No 143
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=87.26 E-value=1.2 Score=44.40 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=49.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcC--CCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhC
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRP--FGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLN 274 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~--~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Ln 274 (293)
...+.|.+.-||+.+..++++.||.. +-++.+|.+..+.. =||+|.+..||+.|.+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHH
Confidence 45578889999999999999999964 77888888876532 4999999999999977654
No 144
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.23 E-value=0.45 Score=49.52 Aligned_cols=74 Identities=22% Similarity=0.299 Sum_probs=61.0
Q ss_pred eEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCcee--CCeEEEEEeccC
Q 022742 213 SVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGY--DNLILRVEWATP 290 (293)
Q Consensus 213 ~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i--~g~~L~V~~Akp 290 (293)
+.++.|.+-..+..-|.-+|..||.+..+...++-. .|.|.|.+.+.|-.|+++|+|..+ -|-+.+|.+|++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 334455566777788999999999999988877744 699999999999999999999865 488899999986
Q ss_pred CC
Q 022742 291 RT 292 (293)
Q Consensus 291 k~ 292 (293)
-+
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 53
No 145
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=83.67 E-value=0.61 Score=41.45 Aligned_cols=126 Identities=20% Similarity=0.316 Sum_probs=87.5
Q ss_pred chhhhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCCCCCCcccCC
Q 022742 122 TKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPPGMRAGAERT 201 (293)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp~~r~~~~~~ 201 (293)
+..+++.|.+||-..|.+++..|-. +-|-..+..|..+..+.. ..-+ ..-..|
T Consensus 19 ~~v~eelL~ElfiqaGPV~kv~ip~--~~d~~~kFa~v~f~~E~s---------v~~a--~~L~ng-------------- 71 (267)
T KOG4454|consen 19 SGVSEELLSELFIQAGPVYKVGIPS--GQDQEQKFAYVFFPNENS---------VQLA--GQLENG-------------- 71 (267)
T ss_pred hhhhHHHHHHHhhccCceEEEeCCC--CccCCCceeeeecccccc---------hhhh--hhhccc--------------
Confidence 3456678889998888999999988 666666666665543210 0000 000011
Q ss_pred CCccccCCCCceEEEec----CCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCc
Q 022742 202 GTDMRRRNDENSVRVTN----LSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGY 276 (293)
Q Consensus 202 ~~~~~~~~~~~~v~V~n----Lp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~ 276 (293)
..........+++.+| |...++++.+.+.|+.-|++..+++..+.+ |+.+-|+|+++......-.++....+.
T Consensus 72 -~~l~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 72 -DDLEEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred -chhccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhccc
Confidence 1112234456777777 888889999999999999999999988865 889999999998877777777766654
No 146
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.71 E-value=5.5 Score=38.96 Aligned_cols=67 Identities=19% Similarity=0.387 Sum_probs=56.8
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCC-CCeeEEEEEecCCCCCe-eeEEEEEEcCHHHHHHHHHHhCCceeCC
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPF-GAVSRVYVAVDQKTGIS-RGFGFVNFVNKEDAQRAINKLNGYGYDN 280 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~-G~i~~v~l~~d~~tg~~-rGfAFV~F~~~e~A~~Ai~~Lng~~i~g 280 (293)
.+.|+|-.+|-.++-.||-.|...| -.|..+++++| |.+ +=...|.|.+..+|......+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7899999999999999999998766 45789999996 333 3356899999999999999999998763
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=80.02 E-value=0.077 Score=51.07 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=61.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEE-EecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYV-AVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l-~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
...+.+-|.|+|+....+.|..|+.+||.+..|.. ..+.+|- .--|+|...+.+..||..|||..+.+..+++.|
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 44567899999999999999999999999987744 4454432 123689999999999999999999988887765
No 148
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=79.22 E-value=12 Score=26.85 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=42.3
Q ss_pred CCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 022742 222 DTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRV 285 (293)
Q Consensus 222 ~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V 285 (293)
.++-.+++.-+..|+-. +|. .| .| | =||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I~--~d-~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RIR--DD-RT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-eEE--ec-CC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35678999999999743 333 33 23 3 389999999999999999999888877765
No 149
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.62 E-value=8.6 Score=35.59 Aligned_cols=47 Identities=28% Similarity=0.321 Sum_probs=35.7
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCe-eEEEEEecCCCCCeeeEEEEEEcCH
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAV-SRVYVAVDQKTGISRGFGFVNFVNK 263 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i-~~v~l~~d~~tg~~rGfAFV~F~~~ 263 (293)
..-|+++|||.++.-.||+..+.+.|-+ .++.+ ..++|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 3569999999999999999888877644 34443 23567799999765
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=77.32 E-value=0.52 Score=45.08 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=50.7
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD 279 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~ 279 (293)
.++++|.+|+..+...++.++|..+|.+...++... -..-++-+.|........|+. ++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 378999999999999999999999999987776543 334466689988888888886 5666554
No 151
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=57.41 E-value=12 Score=32.13 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=50.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCcee
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGY 278 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i 278 (293)
......+++.+++..+....+..+|..+|.+....+...........+.++.+.....+...........+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKKKI 292 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccceee
Confidence 45677999999999999999999999999997777766554444555566555555555555544443333
No 152
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=56.18 E-value=7 Score=20.63 Aligned_cols=16 Identities=38% Similarity=1.005 Sum_probs=13.7
Q ss_pred EeeeCCCCCCCccccCC
Q 022742 141 VCRTCGKKGDHWTSRCP 157 (293)
Q Consensus 141 ~Cr~C~~~g~h~t~~cP 157 (293)
.|..|+. ..|+...||
T Consensus 2 ~C~~C~~-~GH~~~~Cp 17 (18)
T PF00098_consen 2 KCFNCGE-PGHIARDCP 17 (18)
T ss_dssp BCTTTSC-SSSCGCTSS
T ss_pred cCcCCCC-cCcccccCc
Confidence 5889995 679999998
No 153
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.09 E-value=74 Score=32.41 Aligned_cols=80 Identities=20% Similarity=0.354 Sum_probs=59.1
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHhhcCC----CCeeEEEEEecC----------CCCC---------------------
Q 022742 208 RNDENSVRVTNLSED-TREPDLLELFRPF----GAVSRVYVAVDQ----------KTGI--------------------- 251 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~-~te~dL~~lF~~~----G~i~~v~l~~d~----------~tg~--------------------- 251 (293)
....++|-|-||.|+ +.-.||.-+|+.| |.|.+|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456788999999997 6678999888876 578888764331 1122
Q ss_pred ----------------eeeEEEEEEcCHHHHHHHHHHhCCceeCC--eEEEEEe
Q 022742 252 ----------------SRGFGFVNFVNKEDAQRAINKLNGYGYDN--LILRVEW 287 (293)
Q Consensus 252 ----------------~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g--~~L~V~~ 287 (293)
..=||.|.|.+...|......++|..|.. ..|-++|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 12389999999999999999999998874 4444443
No 154
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=51.25 E-value=7.4 Score=25.44 Aligned_cols=19 Identities=42% Similarity=1.162 Sum_probs=15.9
Q ss_pred eEEeeeCCCCCCCccccCCc
Q 022742 139 LMVCRTCGKKGDHWTSRCPF 158 (293)
Q Consensus 139 ~~~Cr~C~~~g~h~t~~cP~ 158 (293)
...|..|+. ..||+..||-
T Consensus 4 ~~~CqkC~~-~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQ-KGHWTYECPN 22 (42)
T ss_pred CCcCcccCC-CCcchhhCCC
Confidence 457999996 6799999984
No 155
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=48.96 E-value=25 Score=32.73 Aligned_cols=78 Identities=14% Similarity=0.290 Sum_probs=53.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCC-------CCCeeeEEEEEEcCHHHHHHH----HHHhCCc--e
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQK-------TGISRGFGFVNFVNKEDAQRA----INKLNGY--G 277 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~-------tg~~rGfAFV~F~~~e~A~~A----i~~Lng~--~ 277 (293)
.|.|...|+..+++-..+-.-|.+||+|++|+++.+.. .........+.|-+++.+... ++.|+-+ .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999888888888899999999999998751 112234567889888776543 3333322 4
Q ss_pred eCCeEEEEEec
Q 022742 278 YDNLILRVEWA 288 (293)
Q Consensus 278 i~g~~L~V~~A 288 (293)
+....|.+.|.
T Consensus 95 L~S~~L~lsFV 105 (309)
T PF10567_consen 95 LKSESLTLSFV 105 (309)
T ss_pred cCCcceeEEEE
Confidence 55555665553
No 156
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=47.02 E-value=34 Score=24.62 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=43.7
Q ss_pred HHHHhhcCCC-CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 022742 227 DLLELFRPFG-AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 293 (293)
Q Consensus 227 dL~~lF~~~G-~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akpk~~ 293 (293)
+|.+-|...| .+..+.-+..+.++.+--.-||+.....+.. +.|+=..+.|+.+.|+..+.+.+
T Consensus 3 ~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~k~~~ 67 (68)
T PF07530_consen 3 EIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPRKRRE 67 (68)
T ss_pred HHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCCCCCC
Confidence 4555555555 5677877777767777778888887655422 23455577889999998887653
No 157
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.55 E-value=41 Score=32.70 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=46.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCe-eEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHH
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAV-SRVYVAVDQKTGISRGFGFVNFVNKEDAQRAIN 271 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i-~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~ 271 (293)
-.+.|-|.++|.....+||-.+|..|+.- -+|.++-|. .||-.|.+...|..||-
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 45788999999999999999999999654 467777653 69999999999999985
No 158
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=43.79 E-value=3.1 Score=41.67 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=56.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN 280 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g 280 (293)
-.+++++.|++++++-.+|..++..+--+.++.+..+-.-.....+++|+|.---....|+-+||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 35789999999999999999999998777777665443333445688999998888888888899887764
No 159
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=43.16 E-value=17 Score=31.51 Aligned_cols=74 Identities=22% Similarity=0.231 Sum_probs=51.8
Q ss_pred CceEEEecCCCCCCHH-----HHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCe-EEE
Q 022742 211 ENSVRVTNLSEDTREP-----DLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNL-ILR 284 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~-----dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~-~L~ 284 (293)
.+++.+.++...+-.+ ....+|.+|-+.....+.+ +.++--|.|.+.+.|..|.-.+++..+.|. .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 3567788887765432 2346677666554444432 244566899999999999999999999887 777
Q ss_pred EEeccC
Q 022742 285 VEWATP 290 (293)
Q Consensus 285 V~~Akp 290 (293)
.-++.+
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 777765
No 160
>PF10751 DUF2535: Protein of unknown function (DUF2535); InterPro: IPR019687 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=42.07 E-value=25 Score=26.33 Aligned_cols=16 Identities=56% Similarity=0.827 Sum_probs=12.3
Q ss_pred EEEEEEcCCCCeEEEEE
Q 022742 46 VIEYKFNDDGNKVKITT 62 (293)
Q Consensus 46 v~~y~~n~~g~kvkvt~ 62 (293)
-+|| .|.+|++||||-
T Consensus 5 sleF-k~~~GqkVKItE 20 (83)
T PF10751_consen 5 SLEF-KNSDGQKVKITE 20 (83)
T ss_pred eEEE-EcCCCCEEEEEE
Confidence 3566 568999999874
No 161
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=40.31 E-value=14 Score=23.33 Aligned_cols=20 Identities=50% Similarity=1.099 Sum_probs=11.9
Q ss_pred EeeeCCCCCCCccccCCcccC
Q 022742 141 VCRTCGKKGDHWTSRCPFKDL 161 (293)
Q Consensus 141 ~Cr~C~~~g~h~t~~cP~k~~ 161 (293)
.|.-|+. |.||...|-.+.-
T Consensus 4 ~CprC~k-g~Hwa~~C~sk~d 23 (36)
T PF14787_consen 4 LCPRCGK-GFHWASECRSKTD 23 (36)
T ss_dssp C-TTTSS-SCS-TTT---TCC
T ss_pred cCcccCC-Ccchhhhhhhhhc
Confidence 4888985 9999999965544
No 162
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=39.52 E-value=42 Score=24.37 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=43.7
Q ss_pred HHHHhhcCCC-CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 022742 227 DLLELFRPFG-AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRT 292 (293)
Q Consensus 227 dL~~lF~~~G-~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akpk~ 292 (293)
+|.+-|...| ++..++-+..+.++.+--.-||+....-+... .|+=..++|+.+.|+....+.
T Consensus 3 ~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 3 QIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccC
Confidence 4566666666 56788888888877777788888875433322 355567788999998766553
No 163
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=39.22 E-value=55 Score=20.33 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=17.8
Q ss_pred CCCCeEEEEEEEEcCCCCeEEEE
Q 022742 39 DENGVKKVIEYKFNDDGNKVKIT 61 (293)
Q Consensus 39 ~~~g~k~v~~y~~n~~g~kvkvt 61 (293)
+++|..+ +|.+|..|+.+++|
T Consensus 12 d~~G~~~--~y~YD~~g~l~~~t 32 (38)
T PF05593_consen 12 DPDGRTT--RYTYDAAGRLTSVT 32 (38)
T ss_pred cCCCCEE--EEEECCCCCEEEEE
Confidence 6888877 79999999988875
No 164
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=36.68 E-value=49 Score=26.40 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=26.0
Q ss_pred CHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCH-HHHHHHH
Q 022742 224 REPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNK-EDAQRAI 270 (293)
Q Consensus 224 te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~-e~A~~Ai 270 (293)
+.+.|.+.|+.|.++. +..+.++. .+.|++.|.|.+- .--..|+
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 4578999999998875 55555543 6789999999854 3344444
No 165
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=33.48 E-value=53 Score=31.59 Aligned_cols=68 Identities=26% Similarity=0.432 Sum_probs=47.2
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCC-eeEEEEEecCCC--CCeeeEEEEEEcCHHHHHHHHHHhCCcee
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGA-VSRVYVAVDQKT--GISRGFGFVNFVNKEDAQRAINKLNGYGY 278 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~-i~~v~l~~d~~t--g~~rGfAFV~F~~~e~A~~Ai~~Lng~~i 278 (293)
-..|.|.+||+..++.+|.+-...|-. +...++.....+ ..-.++|||.|...++...-...++|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 467889999999999988877776532 222223211110 12267899999999998888888888865
No 166
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.80 E-value=7.7 Score=37.93 Aligned_cols=77 Identities=5% Similarity=-0.149 Sum_probs=56.5
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
...++..||...++++|.-+|.-||.|..+.+.+.-..|...-.+||+... .++..+|.-+.-..+.|..+++..|.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 345677889999999999999999999988877665666777788888654 45566665555455556666666554
No 167
>PF02756 GYR: GYR motif; InterPro: IPR004011 The GYR motif is found in several Drosophila melanogaster proteins, in either single or multiple copies. Its function is unknown, however the presence of completely conserved tyrosine residues may suggest it could be a substrate for tyrosine kinases.
Probab=30.28 E-value=82 Score=16.64 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=11.6
Q ss_pred CCCCeEEEEEEEEEE
Q 022742 53 DDGNKVKITTTTRVR 67 (293)
Q Consensus 53 ~~g~kvkvt~~~k~~ 67 (293)
+||=++|.+++++-.
T Consensus 1 ddGYrYkTvrrl~~R 15 (18)
T PF02756_consen 1 DDGYRYKTVRRLKYR 15 (18)
T ss_pred CCcceeeEeEEEeee
Confidence 578889998888654
No 168
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=27.68 E-value=39 Score=25.75 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFR 233 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~ 233 (293)
..++|.|+|||....+++|++.+.
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 457899999999999999987643
No 169
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=27.64 E-value=1.1e+02 Score=21.70 Aligned_cols=19 Identities=21% Similarity=0.656 Sum_probs=16.1
Q ss_pred HHHHHhhcCCCCeeEEEEE
Q 022742 226 PDLLELFRPFGAVSRVYVA 244 (293)
Q Consensus 226 ~dL~~lF~~~G~i~~v~l~ 244 (293)
.+|+++|+..|.|.-+++.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999877763
No 170
>PF06357 Omega-toxin: Omega-atracotoxin; InterPro: IPR009415 This family consists of several Hadronyche versuta (Blue mountains funnel-web spider) specific omega-atracotoxin proteins. Omega-Atracotoxin-Hv1a is an insect-specific neurotoxin whose phylogenetic specificity derives from its ability to antagonise insect, but not vertebrate, voltage-gated calcium channels. Two spatially proximal residues, Asn(27) and Arg(35), form a contiguous molecular surface that is essential for toxin activity. It has been proposed that this surface of the beta-hairpin is a key site for interaction of the toxin with insect calcium channels [].; GO: 0019855 calcium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AXH_A 1HVW_A.
Probab=26.86 E-value=68 Score=20.01 Aligned_cols=14 Identities=50% Similarity=0.738 Sum_probs=9.8
Q ss_pred EEEEEcCCCCeEEE
Q 022742 47 IEYKFNDDGNKVKI 60 (293)
Q Consensus 47 ~~y~~n~~g~kvkv 60 (293)
-+|+.|++|..||.
T Consensus 22 ct~k~NeNGntV~R 35 (37)
T PF06357_consen 22 CTYKTNENGNTVKR 35 (37)
T ss_dssp EEEEE-SSS-EEEE
T ss_pred ceeecccCCceeec
Confidence 57889999998874
No 171
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=24.81 E-value=58 Score=26.79 Aligned_cols=39 Identities=8% Similarity=-0.034 Sum_probs=27.3
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
+++.|..+|+.++.+..|+++.++.......|.|..+..
T Consensus 47 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~ 85 (144)
T PLN03134 47 DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND 85 (144)
T ss_pred CHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECC
Confidence 456899999999999999998643333334555666554
No 172
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=24.44 E-value=73 Score=21.22 Aligned_cols=18 Identities=22% Similarity=0.597 Sum_probs=13.3
Q ss_pred cCCCCeEEEEEEEEcCCC
Q 022742 38 PDENGVKKVIEYKFNDDG 55 (293)
Q Consensus 38 ~~~~g~k~v~~y~~n~~g 55 (293)
+++||.+.+|+|.=|++|
T Consensus 34 ~~pdG~~~~V~Y~Ad~~G 51 (52)
T PF00379_consen 34 IDPDGQTRTVTYVADENG 51 (52)
T ss_pred ECCCCCEEEEEEECCCCC
Confidence 368888888888766554
No 173
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=22.16 E-value=96 Score=24.05 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=13.5
Q ss_pred CCCeEEEEEEEEcCCCCeEEEE
Q 022742 40 ENGVKKVIEYKFNDDGNKVKIT 61 (293)
Q Consensus 40 ~~g~k~v~~y~~n~~g~kvkvt 61 (293)
+++-.+|-||+.|-.-.-|||+
T Consensus 45 ~~~~~~ieEyRv~G~l~~IkV~ 66 (105)
T PF11191_consen 45 EDGGSTIEEYRVNGQLYMIKVQ 66 (105)
T ss_pred ecCCcEEEEEEECCeEeeEEEE
Confidence 4444999999997322234443
No 174
>KOG1708 consensus Mitochondrial/chloroplast ribosomal protein L24 [Translation, ribosomal structure and biogenesis]
Probab=22.12 E-value=89 Score=27.60 Aligned_cols=30 Identities=27% Similarity=0.637 Sum_probs=22.3
Q ss_pred CCeEEEEEEEEcCCCCeEEE-EEEEEEEEEe
Q 022742 41 NGVKKVIEYKFNDDGNKVKI-TTTTRVRKLA 70 (293)
Q Consensus 41 ~g~k~v~~y~~n~~g~kvkv-t~~~k~~~~~ 70 (293)
|..-+-++|+++++|++|+| ||.=+++-+.
T Consensus 146 d~q~te~~wr~~e~GekVRvstrSG~iIpip 176 (236)
T KOG1708|consen 146 DDQPTEVEWRFTEDGEKVRVSTRSGRIIPIP 176 (236)
T ss_pred ccCCceeeEEEcCCCcEEEEEecccccccCc
Confidence 55668899999999999999 4444444443
No 175
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.63 E-value=1.2e+02 Score=21.71 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=22.8
Q ss_pred EEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 022742 255 FGFVNFVNKEDAQRAINKLNGYGYDNLI 282 (293)
Q Consensus 255 fAFV~F~~~e~A~~Ai~~Lng~~i~g~~ 282 (293)
+.+|+|.+..+|-+|-+.|....+..+.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 6799999999999998888876665444
No 176
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle. This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.
Probab=21.32 E-value=1.3e+02 Score=23.53 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=18.4
Q ss_pred CCeEEEEEEEEcCCCCeEEEEEE
Q 022742 41 NGVKKVIEYKFNDDGNKVKITTT 63 (293)
Q Consensus 41 ~g~k~v~~y~~n~~g~kvkvt~~ 63 (293)
.+.-+-+.|++.+||+|+++-++
T Consensus 77 ~~k~~rv~~~~~~~g~kvRv~k~ 99 (104)
T TIGR01079 77 TGKATRVGIRFEEDGKKVRVFKK 99 (104)
T ss_pred CCCCeEEEEEEccCCcEEEEEec
Confidence 57778899999889998877653
No 177
>PF12970 DUF3858: Domain of Unknown Function with PDB structure (DUF3858); InterPro: IPR024544 This domain of unknown function is structurally similar to part of neuropilin-2. The proteins it occurs in have not yet been functionally characterised.; PDB: 3KD4_A.
Probab=21.09 E-value=1.4e+02 Score=23.94 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=23.8
Q ss_pred CCceeeecCCCCeEEEEEEEEcCCCCeEEEEEEEEEEEEeeeeeChh
Q 022742 31 PPKQVIGPDENGVKKVIEYKFNDDGNKVKITTTTRVRKLANARLSKR 77 (293)
Q Consensus 31 p~~~~~~~~~~g~k~v~~y~~n~~g~kvkvt~~~k~~~~~~~~v~~~ 77 (293)
|..+.+ .|+=|.- .|+++. .|.+++|+|.++..|+ .+.++
T Consensus 55 ~~~K~I-~N~~Gk~-~isv~~--~~~~~~V~rsL~L~Kq---litPa 94 (116)
T PF12970_consen 55 PMEKKI-DNPVGKV-SISVKP--EGNKIKVTRSLELKKQ---LITPA 94 (116)
T ss_dssp -S-EEE-EETTEEE-EEEEEE--ETTEEEEEEEEEE--S---EE-HH
T ss_pred ccceec-cCCcceE-EEEEEe--cCCeEEEEEEEEEeee---eeCch
Confidence 444555 3566644 445544 5899999999998887 56654
No 178
>PRK11901 hypothetical protein; Reviewed
Probab=20.37 E-value=4.2e+02 Score=25.18 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=41.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEE--EEEEcCHHHHHHHHHHhCC
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFG--FVNFVNKEDAQRAINKLNG 275 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfA--FV~F~~~e~A~~Ai~~Lng 275 (293)
.....+|-|..+ -.++.|..|..+++ +..+++..-...|+. -|. |-.|.+.+.|..|+..|..
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 445667777665 34777888877775 344555444333443 233 3378999999999998864
Done!