Query 022742
Match_columns 293
No_of_seqs 340 out of 1724
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 10:22:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 2.7E-22 9.4E-27 155.4 12.3 83 209-291 17-99 (99)
2 3md1_A Nuclear and cytoplasmic 99.8 2.2E-20 7.5E-25 138.7 12.8 82 212-293 2-83 (83)
3 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.6E-20 5.5E-25 140.6 11.8 84 209-292 4-87 (87)
4 2cq0_A Eukaryotic translation 99.8 2.6E-20 9E-25 144.2 13.3 86 207-292 11-96 (103)
5 3s8s_A Histone-lysine N-methyl 99.8 2.6E-20 9E-25 147.0 12.9 83 209-291 4-86 (110)
6 2lxi_A RNA-binding protein 10; 99.8 1.7E-21 5.9E-26 148.4 5.7 83 211-293 1-85 (91)
7 3md3_A Nuclear and cytoplasmic 99.8 5E-20 1.7E-24 152.2 13.3 154 125-290 13-166 (166)
8 2dgo_A Cytotoxic granule-assoc 99.8 8.9E-20 3E-24 143.9 14.0 86 207-292 11-96 (115)
9 2cqc_A Arginine/serine-rich sp 99.8 8E-20 2.7E-24 139.0 12.8 83 208-290 12-94 (95)
10 2cpz_A CUG triplet repeat RNA- 99.8 1.2E-19 4.1E-24 143.3 13.6 85 208-292 22-106 (115)
11 2lkz_A RNA-binding protein 5; 99.8 2E-20 6.8E-25 144.1 8.8 84 208-291 6-95 (95)
12 1x5u_A Splicing factor 3B subu 99.8 4.4E-20 1.5E-24 143.3 10.7 86 207-292 11-96 (105)
13 2do4_A Squamous cell carcinoma 99.8 1.8E-19 6E-24 138.8 13.9 84 208-292 14-97 (100)
14 2dgs_A DAZ-associated protein 99.8 7.2E-20 2.5E-24 140.7 11.5 84 208-292 7-90 (99)
15 2e5h_A Zinc finger CCHC-type a 99.8 9E-20 3.1E-24 138.6 11.9 82 208-289 13-94 (94)
16 2jrs_A RNA-binding protein 39; 99.8 6.6E-20 2.3E-24 144.0 11.4 86 208-293 23-108 (108)
17 1x4h_A RNA-binding protein 28; 99.8 8.8E-20 3E-24 142.8 11.8 85 208-292 12-102 (111)
18 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.6E-20 1.9E-24 141.9 10.4 85 208-292 9-93 (102)
19 2dnz_A Probable RNA-binding pr 99.8 8E-20 2.7E-24 139.1 11.0 84 209-292 3-86 (95)
20 1p27_B RNA-binding protein 8A; 99.8 8.9E-20 3E-24 141.8 11.4 85 208-292 20-104 (106)
21 3mdf_A Peptidyl-prolyl CIS-tra 99.8 8.5E-20 2.9E-24 136.0 10.7 81 209-289 5-85 (85)
22 1whw_A Hypothetical protein ri 99.8 8.8E-20 3E-24 140.1 11.1 84 209-292 6-89 (99)
23 2x1f_A MRNA 3'-END-processing 99.8 9E-20 3.1E-24 139.5 10.9 82 211-292 2-83 (96)
24 2dnm_A SRP46 splicing factor; 99.8 5.8E-20 2E-24 142.2 9.8 85 208-292 10-94 (103)
25 2dng_A Eukaryotic translation 99.8 2.2E-19 7.6E-24 139.0 13.1 83 208-292 12-94 (103)
26 4f02_A Polyadenylate-binding p 99.8 2.8E-20 9.6E-25 162.3 8.9 153 125-291 28-181 (213)
27 2cph_A RNA binding motif prote 99.8 9.7E-20 3.3E-24 141.7 11.0 85 208-292 12-98 (107)
28 1x5s_A Cold-inducible RNA-bind 99.8 5.6E-20 1.9E-24 141.9 9.3 85 208-292 9-93 (102)
29 2d9p_A Polyadenylate-binding p 99.8 2E-19 6.9E-24 139.2 12.4 83 208-292 12-94 (103)
30 2cpe_A RNA-binding protein EWS 99.8 1.2E-19 4E-24 142.8 11.2 85 208-292 12-104 (113)
31 2dnh_A Bruno-like 5, RNA bindi 99.8 2.7E-19 9.2E-24 138.8 12.9 84 208-292 12-98 (105)
32 3p5t_L Cleavage and polyadenyl 99.8 2.4E-20 8.1E-25 141.3 6.4 81 212-292 2-84 (90)
33 1x5t_A Splicing factor 3B subu 99.8 7.8E-20 2.7E-24 139.5 9.2 84 209-292 3-87 (96)
34 2cpf_A RNA binding motif prote 99.8 1.6E-19 5.6E-24 138.3 10.9 84 209-292 3-89 (98)
35 3ns6_A Eukaryotic translation 99.8 2.2E-20 7.4E-25 144.6 6.0 82 210-291 5-93 (100)
36 2cjk_A Nuclear polyadenylated 99.8 3.5E-20 1.2E-24 153.9 7.5 152 125-292 16-167 (167)
37 2khc_A Testis-specific RNP-typ 99.8 2.9E-19 9.8E-24 141.6 12.5 82 208-289 37-118 (118)
38 1oo0_B CG8781-PA, drosophila Y 99.8 1.8E-19 6.1E-24 141.1 11.0 85 208-292 23-107 (110)
39 4f25_A Polyadenylate-binding p 99.8 2.7E-19 9.2E-24 141.8 12.0 80 211-292 5-84 (115)
40 1wi8_A EIF-4B, eukaryotic tran 99.8 2.4E-19 8.1E-24 139.1 11.1 83 208-292 12-95 (104)
41 2la6_A RNA-binding protein FUS 99.8 3.1E-19 1.1E-23 137.2 11.6 82 208-289 10-99 (99)
42 2dh8_A DAZ-associated protein 99.8 2.3E-19 7.8E-24 139.3 10.8 85 207-292 12-96 (105)
43 2div_A TRNA selenocysteine ass 99.8 1.9E-19 6.6E-24 138.2 10.0 85 208-292 6-95 (99)
44 2cq3_A RNA-binding protein 9; 99.8 7.7E-19 2.6E-23 135.9 13.4 83 208-292 12-94 (103)
45 2dgp_A Bruno-like 4, RNA bindi 99.8 1.4E-19 4.7E-24 140.7 9.2 85 208-292 10-97 (106)
46 2cqi_A Nucleolysin TIAR; RNA r 99.8 6E-19 2.1E-23 136.5 12.5 84 207-292 11-94 (103)
47 2cqp_A RNA-binding protein 12; 99.8 3E-19 1E-23 136.8 10.7 84 209-292 13-96 (98)
48 2qfj_A FBP-interacting repress 99.8 4.5E-19 1.6E-23 153.2 13.0 160 125-292 41-206 (216)
49 2dgw_A Probable RNA-binding pr 99.8 9.1E-19 3.1E-23 132.5 12.8 83 208-293 7-89 (91)
50 4a8x_A RNA-binding protein wit 99.8 3.6E-19 1.2E-23 133.3 10.3 83 210-292 3-86 (88)
51 2do0_A HnRNP M, heterogeneous 99.8 1.4E-18 4.6E-23 136.8 14.1 83 208-291 12-94 (114)
52 2ywk_A Putative RNA-binding pr 99.8 5.3E-19 1.8E-23 134.6 11.3 82 208-290 13-94 (95)
53 3ucg_A Polyadenylate-binding p 99.8 5E-19 1.7E-23 133.0 10.6 82 210-292 5-86 (89)
54 2fy1_A RNA-binding motif prote 99.8 3.8E-19 1.3E-23 141.4 10.0 84 208-292 4-87 (116)
55 2kxn_B Transformer-2 protein h 99.8 3.2E-19 1.1E-23 144.6 9.7 85 208-292 43-127 (129)
56 2cqg_A TDP-43, TAR DNA-binding 99.8 1.9E-18 6.4E-23 133.7 13.6 83 208-292 12-94 (103)
57 3s7r_A Heterogeneous nuclear r 99.8 1.4E-18 4.8E-23 130.2 12.5 80 208-288 8-87 (87)
58 2dhg_A TRNA selenocysteine ass 99.8 3.9E-19 1.3E-23 137.6 9.5 84 208-292 6-91 (104)
59 2cpi_A CCR4-NOT transcription 99.8 8.2E-19 2.8E-23 138.1 11.5 85 208-292 12-102 (111)
60 2dgx_A KIAA0430 protein; RRM d 99.8 5.8E-19 2E-23 135.3 10.3 82 209-293 7-92 (96)
61 3n9u_C Cleavage and polyadenyl 99.8 4.6E-19 1.6E-23 148.4 10.5 83 209-291 53-137 (156)
62 2cq4_A RNA binding motif prote 99.8 3.1E-19 1E-23 140.8 8.8 82 209-291 23-104 (114)
63 1l3k_A Heterogeneous nuclear r 99.8 8.4E-19 2.9E-23 149.3 12.1 157 126-292 27-184 (196)
64 2cqd_A RNA-binding region cont 99.8 8.7E-19 3E-23 138.5 11.3 83 208-291 14-96 (116)
65 1p1t_A Cleavage stimulation fa 99.8 4.1E-19 1.4E-23 137.4 9.1 83 210-292 7-89 (104)
66 1u6f_A Tcubp1, RNA-binding pro 99.8 1.1E-18 3.8E-23 142.1 12.0 85 208-292 39-123 (139)
67 2ek1_A RNA-binding protein 12; 99.8 4.5E-19 1.6E-23 134.9 8.9 82 209-290 13-94 (95)
68 3ulh_A THO complex subunit 4; 99.8 1.7E-18 6E-23 134.6 12.4 81 208-289 26-106 (107)
69 2dgv_A HnRNP M, heterogeneous 99.8 1E-18 3.6E-23 132.1 10.8 82 209-292 6-87 (92)
70 1x5o_A RNA binding motif, sing 99.8 3.1E-18 1.1E-22 134.8 13.8 84 208-292 22-113 (114)
71 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.4E-18 4.8E-23 141.1 12.1 82 207-288 59-140 (140)
72 3ex7_B RNA-binding protein 8A; 99.8 6.2E-19 2.1E-23 141.3 9.3 85 208-292 19-103 (126)
73 2fc8_A NCL protein; structure 99.8 2.7E-18 9.3E-23 132.4 12.5 82 208-292 12-93 (102)
74 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.7E-19 9.2E-24 138.2 6.7 84 208-293 16-100 (100)
75 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.7E-18 9.4E-23 142.7 13.2 85 208-292 36-120 (156)
76 2m2b_A RNA-binding protein 10; 99.8 2.4E-19 8.1E-24 145.3 6.4 84 208-292 20-109 (131)
77 1x4e_A RNA binding motif, sing 99.8 2.8E-19 9.5E-24 133.5 5.7 82 209-290 3-84 (85)
78 2rs2_A Musashi-1, RNA-binding 99.8 1.4E-18 4.8E-23 136.5 10.0 84 208-292 22-105 (109)
79 2kt5_A RNA and export factor-b 99.8 6.1E-18 2.1E-22 135.3 13.8 84 208-292 32-115 (124)
80 1b7f_A Protein (SXL-lethal pro 99.8 2.5E-18 8.7E-23 142.6 11.8 149 126-288 17-168 (168)
81 2dis_A Unnamed protein product 99.8 7.3E-19 2.5E-23 137.2 8.0 84 209-292 6-93 (109)
82 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.1E-18 1.1E-22 143.9 12.4 85 208-292 69-153 (165)
83 1s79_A Lupus LA protein; RRM, 99.8 7.2E-19 2.5E-23 137.2 7.7 80 209-290 9-88 (103)
84 1x4b_A Heterogeneous nuclear r 99.8 1.7E-18 5.8E-23 136.9 9.9 83 209-292 25-107 (116)
85 1x4a_A Splicing factor, argini 99.8 6E-18 2.1E-22 132.2 12.9 82 208-292 19-100 (109)
86 2fc9_A NCL protein; structure 99.8 3.6E-18 1.2E-22 131.6 11.5 81 208-292 12-92 (101)
87 2jwn_A Embryonic polyadenylate 99.8 3.1E-18 1E-22 136.8 10.9 83 209-292 34-116 (124)
88 2err_A Ataxin-2-binding protei 99.8 2.1E-18 7.2E-23 135.4 9.7 83 208-292 26-108 (109)
89 2ki2_A SS-DNA binding protein 99.8 2.3E-19 7.9E-24 135.4 3.7 80 212-292 2-81 (90)
90 3nmr_A Cugbp ELAV-like family 99.8 3.4E-18 1.2E-22 142.5 11.1 153 125-289 16-175 (175)
91 2kn4_A Immunoglobulin G-bindin 99.8 2.3E-18 8E-23 143.0 9.9 84 209-292 68-151 (158)
92 2g4b_A Splicing factor U2AF 65 99.8 5.5E-18 1.9E-22 141.3 12.1 81 209-289 92-172 (172)
93 2mss_A Protein (musashi1); RNA 99.8 6.7E-19 2.3E-23 128.3 5.7 75 213-288 1-75 (75)
94 1wez_A HnRNP H', FTP-3, hetero 99.8 4.1E-18 1.4E-22 132.5 10.2 82 208-292 12-93 (102)
95 2cpy_A RNA-binding protein 12; 99.8 1.7E-18 5.7E-23 136.9 8.0 82 208-291 12-94 (114)
96 2cq1_A PTB-like protein L; RRM 99.8 9.3E-18 3.2E-22 130.6 12.0 79 208-292 12-92 (101)
97 1sjq_A Polypyrimidine tract-bi 99.7 2E-18 6.8E-23 135.3 8.0 79 208-292 13-93 (105)
98 2yh0_A Splicing factor U2AF 65 99.7 7.1E-18 2.4E-22 143.7 12.2 85 208-292 111-195 (198)
99 2hgl_A HNRPF protein, heteroge 99.7 2.3E-18 7.8E-23 141.1 8.6 82 208-291 41-125 (136)
100 1wel_A RNA-binding protein 12; 99.7 2E-18 6.7E-23 138.4 8.0 83 208-291 22-104 (124)
101 1fxl_A Paraneoplastic encephal 99.7 5.5E-18 1.9E-22 140.0 10.9 149 126-288 16-167 (167)
102 2nlw_A Eukaryotic translation 99.7 3.6E-18 1.2E-22 133.1 9.1 82 209-292 13-101 (105)
103 1wg5_A Heterogeneous nuclear r 99.7 4.4E-18 1.5E-22 132.3 9.5 83 208-292 12-95 (104)
104 1x4d_A Matrin 3; structural ge 99.7 2.9E-18 1E-22 133.7 8.4 79 208-292 12-93 (102)
105 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.2E-18 4.1E-23 127.3 5.8 77 212-289 1-77 (77)
106 1x4c_A Splicing factor, argini 99.7 1.3E-17 4.6E-22 130.4 11.9 77 209-292 13-94 (108)
107 2lea_A Serine/arginine-rich sp 99.7 1E-18 3.5E-23 142.6 5.4 85 208-292 44-128 (135)
108 1why_A Hypothetical protein ri 99.7 9.3E-18 3.2E-22 128.4 10.5 80 208-293 14-95 (97)
109 2db1_A Heterogeneous nuclear r 99.7 7.9E-18 2.7E-22 134.1 10.1 82 208-291 14-98 (118)
110 3r27_A HnRNP L, heterogeneous 99.7 8.3E-18 2.8E-22 130.6 9.9 79 208-292 18-98 (100)
111 2cpj_A Non-POU domain-containi 99.7 9.6E-18 3.3E-22 128.8 10.1 79 208-292 12-90 (99)
112 1wex_A Hypothetical protein (r 99.7 7.4E-18 2.5E-22 131.8 9.5 79 208-292 12-92 (104)
113 1fjc_A Nucleolin RBD2, protein 99.7 6.5E-18 2.2E-22 128.8 8.8 80 208-292 13-92 (96)
114 2a3j_A U1 small nuclear ribonu 99.7 4.8E-18 1.6E-22 137.6 8.2 81 209-292 27-111 (127)
115 1fj7_A Nucleolin RBD1, protein 99.7 4.7E-19 1.6E-23 136.6 2.1 83 209-293 15-97 (101)
116 2la4_A Nuclear and cytoplasmic 99.7 4.2E-18 1.5E-22 131.2 7.4 77 209-291 25-101 (101)
117 2dgt_A RNA-binding protein 30; 99.7 2.5E-17 8.4E-22 124.9 11.5 78 207-292 6-83 (92)
118 1nu4_A U1A RNA binding domain; 99.7 5.5E-18 1.9E-22 129.4 7.9 82 208-292 5-90 (97)
119 2dnq_A RNA-binding protein 4B; 99.7 1.6E-17 5.6E-22 125.3 10.1 77 208-292 5-81 (90)
120 2lcw_A RNA-binding protein FUS 99.6 3.3E-19 1.1E-23 141.1 0.0 84 209-292 5-96 (116)
121 2ad9_A Polypyrimidine tract-bi 99.7 1.4E-17 4.9E-22 133.3 9.5 79 208-292 28-108 (119)
122 2ytc_A PRE-mRNA-splicing facto 99.7 2.3E-17 7.8E-22 122.9 10.0 76 208-289 9-85 (85)
123 2jvo_A Nucleolar protein 3; nu 99.7 2E-17 6.9E-22 129.8 10.0 77 208-292 28-104 (108)
124 2cpx_A Hypothetical protein FL 99.7 4.9E-18 1.7E-22 133.7 6.5 85 208-292 22-106 (115)
125 3q2s_C Cleavage and polyadenyl 99.7 8.3E-18 2.8E-22 149.1 8.7 81 210-290 67-149 (229)
126 1x4g_A Nucleolysin TIAR; struc 99.7 1.8E-17 6.2E-22 129.6 9.6 79 208-292 22-100 (109)
127 2e5j_A Methenyltetrahydrofolat 99.7 2E-17 6.9E-22 126.7 9.6 81 208-293 16-96 (97)
128 2xs2_A Deleted in azoospermia- 99.7 8.9E-18 3E-22 129.6 7.4 81 209-292 7-87 (102)
129 2wbr_A GW182, gawky, LD47780P; 99.7 2.1E-17 7E-22 125.0 9.0 74 210-289 6-79 (89)
130 3lqv_A PRE-mRNA branch site pr 99.7 1.7E-17 6E-22 130.7 9.0 80 209-291 6-85 (115)
131 4f02_A Polyadenylate-binding p 99.7 4.8E-17 1.6E-21 141.7 12.4 83 209-291 13-95 (213)
132 2cpd_A Apobec-1 stimulating pr 99.7 8.8E-17 3E-21 123.4 12.4 77 208-292 12-90 (99)
133 3smz_A Protein raver-1, ribonu 99.7 3.5E-17 1.2E-21 147.8 11.7 156 125-292 108-265 (284)
134 2xnq_A Nuclear polyadenylated 99.7 5.9E-17 2E-21 124.5 11.2 77 208-292 19-96 (97)
135 1fxl_A Paraneoplastic encephal 99.7 7E-17 2.4E-21 133.3 12.4 82 211-292 2-83 (167)
136 2dnn_A RNA-binding protein 12; 99.7 2E-17 6.7E-22 130.5 8.6 80 209-291 14-93 (109)
137 2dgu_A Heterogeneous nuclear r 99.7 4.5E-17 1.5E-21 126.1 10.3 76 209-292 9-84 (103)
138 2krb_A Eukaryotic translation 99.7 5.9E-18 2E-22 125.4 5.1 73 211-285 1-80 (81)
139 1b7f_A Protein (SXL-lethal pro 99.7 4.6E-17 1.6E-21 134.9 10.9 83 210-292 2-84 (168)
140 2lmi_A GRSF-1, G-rich sequence 99.7 4.4E-18 1.5E-22 133.0 4.4 82 208-291 8-92 (107)
141 1whx_A Hypothetical protein ri 99.7 1.4E-17 4.8E-22 131.3 7.1 76 210-291 9-84 (111)
142 2e44_A Insulin-like growth fac 99.7 3.3E-17 1.1E-21 124.9 8.6 80 209-292 13-93 (96)
143 1wf1_A RNA-binding protein RAL 99.7 1.2E-16 4E-21 125.2 11.8 75 209-291 25-100 (110)
144 2ghp_A U4/U6 snRNA-associated 99.7 2.3E-17 7.8E-22 149.6 8.8 84 208-292 207-292 (292)
145 1x5p_A Negative elongation fac 99.7 1.5E-16 5.2E-21 121.8 12.0 77 208-292 12-88 (97)
146 1iqt_A AUF1, heterogeneous nuc 99.7 4.6E-18 1.6E-22 123.7 3.3 75 213-288 1-75 (75)
147 2kvi_A Nuclear polyadenylated 99.7 3.2E-17 1.1E-21 125.4 8.1 78 207-292 6-84 (96)
148 2jvr_A Nucleolar protein 3; RN 99.7 2.8E-17 9.7E-22 130.0 8.0 79 209-291 26-105 (111)
149 2dnp_A RNA-binding protein 14; 99.7 7.3E-17 2.5E-21 121.7 9.9 77 208-292 6-82 (90)
150 2cqh_A IGF-II mRNA-binding pro 99.7 3.1E-17 1E-21 124.5 7.7 77 209-292 6-84 (93)
151 3pgw_S U1-70K; protein-RNA com 99.7 9.2E-17 3.1E-21 155.1 12.9 84 209-292 100-183 (437)
152 2hvz_A Splicing factor, argini 99.7 1.6E-17 5.6E-22 127.9 6.1 76 212-292 1-76 (101)
153 3egn_A RNA-binding protein 40; 99.7 1.6E-17 5.3E-22 136.1 6.3 84 209-292 43-131 (143)
154 2i2y_A Fusion protein consists 99.7 5E-17 1.7E-21 134.2 8.9 80 208-292 70-149 (150)
155 1x4f_A Matrin 3; structural ge 99.7 6.7E-17 2.3E-21 128.1 8.7 79 208-292 22-103 (112)
156 3smz_A Protein raver-1, ribonu 99.7 1.8E-16 6.2E-21 143.1 12.3 141 126-292 36-176 (284)
157 2e5g_A U6 snRNA-specific termi 99.7 1.6E-16 5.6E-21 120.9 9.9 78 209-292 6-83 (94)
158 1l3k_A Heterogeneous nuclear r 99.7 2E-16 6.9E-21 134.4 11.3 83 208-291 10-92 (196)
159 2f3j_A RNA and export factor b 99.7 9E-17 3.1E-21 137.0 8.8 83 208-291 85-167 (177)
160 1fje_B Nucleolin RBD12, protei 99.7 2E-17 6.8E-22 138.6 4.6 79 209-292 97-175 (175)
161 1wg1_A KIAA1579 protein, homol 99.7 2.3E-16 7.7E-21 118.7 9.5 75 210-291 4-78 (88)
162 2dha_A FLJ20171 protein; RRM d 99.7 6.3E-17 2.2E-21 130.3 6.2 82 208-291 20-105 (123)
163 3d2w_A TAR DNA-binding protein 99.7 2.8E-16 9.5E-21 119.0 9.3 77 208-293 8-86 (89)
164 2hgm_A HNRPF protein, heteroge 99.7 7.8E-17 2.7E-21 130.3 6.3 81 208-291 39-121 (126)
165 3zzy_A Polypyrimidine tract-bi 99.7 6.9E-16 2.4E-20 125.2 11.6 78 209-291 26-106 (130)
166 2j8a_A Histone-lysine N-methyl 99.7 2.4E-16 8.2E-21 127.2 8.7 78 212-289 3-94 (136)
167 2ghp_A U4/U6 snRNA-associated 99.7 2.4E-16 8.3E-21 142.8 9.7 144 125-292 54-198 (292)
168 1sjr_A Polypyrimidine tract-bi 99.7 3.5E-16 1.2E-20 131.7 9.7 80 209-292 44-125 (164)
169 2hgn_A Heterogeneous nuclear r 99.6 4E-17 1.4E-21 134.1 3.4 82 208-292 43-124 (139)
170 3md3_A Nuclear and cytoplasmic 99.6 6.3E-16 2.2E-20 127.4 10.7 80 212-292 1-80 (166)
171 2pe8_A Splicing factor 45; RRM 99.6 1.7E-15 5.8E-20 118.5 11.0 82 209-290 6-93 (105)
172 2diu_A KIAA0430 protein; struc 99.6 6.5E-16 2.2E-20 118.1 8.3 73 211-293 9-86 (96)
173 2dnl_A Cytoplasmic polyadenyla 99.6 4.8E-16 1.6E-20 122.7 7.8 78 209-289 6-86 (114)
174 3pgw_A U1-A; protein-RNA compl 99.6 2E-15 7E-20 136.0 12.9 77 209-290 205-282 (282)
175 3nmr_A Cugbp ELAV-like family 99.6 1.2E-15 4.2E-20 126.9 10.5 82 210-291 2-88 (175)
176 2e5i_A Heterogeneous nuclear r 99.6 3.8E-15 1.3E-19 120.0 13.0 75 212-292 26-103 (124)
177 2bz2_A Negative elongation fac 99.6 7.9E-16 2.7E-20 123.2 8.9 77 208-292 36-112 (121)
178 3u1l_A PRE-mRNA-splicing facto 99.6 7.3E-16 2.5E-20 137.4 9.4 80 208-293 131-231 (240)
179 2cq2_A Hypothetical protein LO 99.6 5.2E-16 1.8E-20 123.3 7.2 77 209-291 23-106 (114)
180 3beg_B Splicing factor, argini 99.6 5.5E-16 1.9E-20 122.7 7.1 75 210-291 15-94 (115)
181 2qfj_A FBP-interacting repress 99.6 1.1E-15 3.6E-20 131.9 9.2 83 209-291 26-108 (216)
182 3sde_A Paraspeckle component 1 99.6 1.1E-15 3.9E-20 137.1 9.5 141 125-291 35-179 (261)
183 1qm9_A Polypyrimidine tract-bi 99.6 1.5E-15 5.2E-20 129.8 9.6 78 209-291 118-197 (198)
184 3tyt_A Heterogeneous nuclear r 99.6 1.9E-15 6.4E-20 131.6 10.2 76 210-290 3-79 (205)
185 1wf0_A TDP-43, TAR DNA-binding 99.6 5.2E-16 1.8E-20 116.5 5.7 77 209-292 3-79 (88)
186 3tyt_A Heterogeneous nuclear r 99.6 2E-15 6.7E-20 131.5 9.4 78 209-288 121-204 (205)
187 2cjk_A Nuclear polyadenylated 99.6 1.4E-15 4.8E-20 126.0 8.1 80 210-291 2-81 (167)
188 2adc_A Polypyrimidine tract-bi 99.6 3E-15 1E-19 131.7 10.5 78 209-291 149-228 (229)
189 2dit_A HIV TAT specific factor 99.6 7.2E-15 2.4E-19 115.6 11.3 81 208-292 12-103 (112)
190 2hzc_A Splicing factor U2AF 65 99.6 2.2E-15 7.6E-20 112.3 7.5 72 209-287 4-86 (87)
191 3pgw_A U1-A; protein-RNA compl 99.6 6.2E-15 2.1E-19 132.9 11.7 82 208-292 6-91 (282)
192 2voo_A Lupus LA protein; RNA-b 99.6 9.3E-15 3.2E-19 126.1 11.4 79 210-290 108-186 (193)
193 2adc_A Polypyrimidine tract-bi 99.5 1.1E-14 3.8E-19 128.0 8.8 79 208-291 31-110 (229)
194 1fje_B Nucleolin RBD12, protei 99.5 3.2E-15 1.1E-19 125.0 3.7 83 208-292 10-92 (175)
195 1qm9_A Polypyrimidine tract-bi 99.5 1.5E-14 5E-19 123.6 6.4 77 210-291 2-79 (198)
196 3v4m_A Splicing factor U2AF 65 99.5 4.6E-14 1.6E-18 110.2 7.9 81 210-290 4-96 (105)
197 1jmt_A Splicing factor U2AF 35 99.5 1.6E-14 5.5E-19 112.6 4.2 72 216-288 20-103 (104)
198 3sde_A Paraspeckle component 1 99.5 1.4E-13 4.7E-18 123.4 10.0 78 208-291 19-96 (261)
199 3ue2_A Poly(U)-binding-splicin 99.5 2.1E-13 7.1E-18 108.8 9.9 82 209-290 18-108 (118)
200 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.8E-13 9.4E-18 105.0 10.0 75 211-292 10-91 (100)
201 2yh0_A Splicing factor U2AF 65 99.4 2.6E-13 8.7E-18 115.3 8.1 75 210-291 3-88 (198)
202 2g4b_A Splicing factor U2AF 65 99.4 2.9E-13 9.9E-18 112.4 8.2 75 210-291 3-88 (172)
203 3tht_A Alkylated DNA repair pr 99.3 4.5E-12 1.5E-16 118.5 8.4 76 208-289 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.3 9.6E-12 3.3E-16 98.5 8.8 77 210-290 6-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.1 3.1E-10 1.1E-14 85.8 8.5 74 209-291 5-86 (91)
206 1owx_A Lupus LA protein, SS-B, 98.9 2.3E-09 8E-14 85.5 8.3 75 208-288 15-93 (121)
207 3dxb_A Thioredoxin N-terminall 98.9 2.6E-09 8.9E-14 93.1 8.3 66 224-289 142-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.8 4.7E-09 1.6E-13 79.8 6.5 73 209-290 13-94 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.4 1.6E-06 5.4E-11 67.4 9.2 72 209-286 19-95 (117)
210 1wey_A Calcipressin 1; structu 97.5 0.00023 7.8E-09 54.8 6.8 76 210-291 4-84 (104)
211 2dhx_A Poly (ADP-ribose) polym 97.1 0.0026 9.1E-08 48.7 8.8 73 210-291 7-84 (104)
212 1uw4_A UPF3X; nonsense mediate 96.9 0.0067 2.3E-07 45.5 9.5 78 212-289 2-86 (91)
213 1whv_A Poly(A)-specific ribonu 96.9 0.0046 1.6E-07 46.9 8.1 55 211-274 16-70 (100)
214 1wwh_A Nucleoporin 35, nucleop 96.6 0.0087 3E-07 47.1 8.0 72 208-287 21-93 (119)
215 3ctr_A Poly(A)-specific ribonu 96.5 0.0044 1.5E-07 47.1 5.5 54 212-274 7-60 (101)
216 4f25_A Polyadenylate-binding p 95.5 0.002 6.7E-08 49.8 -0.3 92 125-227 18-113 (115)
217 2kn4_A Immunoglobulin G-bindin 95.2 0.018 6.3E-07 46.4 4.5 34 240-275 2-35 (158)
218 2i2y_A Fusion protein consists 95.2 0.0099 3.4E-07 47.8 2.8 41 249-290 9-50 (150)
219 3p3d_A Nucleoporin 53; structu 95.1 0.015 5.1E-07 46.4 3.5 79 209-289 5-97 (132)
220 2l08_A Regulator of nonsense t 95.1 0.052 1.8E-06 41.1 6.3 79 211-289 9-94 (97)
221 3pq1_A Poly(A) RNA polymerase; 94.5 0.02 6.8E-07 55.2 3.4 57 209-271 51-107 (464)
222 3d45_A Poly(A)-specific ribonu 79.2 4.2 0.00014 39.3 7.4 56 211-275 440-495 (507)
223 2hvz_A Splicing factor, argini 78.8 0.38 1.3E-05 35.3 -0.1 34 125-163 13-46 (101)
224 3lqv_A PRE-mRNA branch site pr 76.6 0.31 1.1E-05 36.7 -1.2 87 126-237 22-109 (115)
225 1a6b_B Momulv, zinc finger pro 72.4 1.6 5.5E-05 27.3 1.5 25 138-163 9-33 (40)
226 2g0c_A ATP-dependent RNA helic 60.9 12 0.0004 25.9 4.5 59 222-289 12-75 (76)
227 1u6p_A GAG polyprotein; MLV, A 59.6 3.1 0.0001 28.0 1.0 24 138-162 22-45 (56)
228 2ysa_A Retinoblastoma-binding 45.2 7.5 0.00026 25.9 1.1 19 140-159 8-26 (55)
229 4fxv_A ELAV-like protein 1; RN 40.2 6.9 0.00024 28.6 0.3 40 124-163 31-70 (99)
230 1dsq_A Nucleic acid binding pr 40.1 8.6 0.00029 21.3 0.7 19 140-159 3-21 (26)
231 2cq4_A RNA binding motif prote 39.4 21 0.00071 26.2 3.0 39 125-163 38-76 (114)
232 2krb_A Eukaryotic translation 38.9 25 0.00086 24.0 3.2 37 125-163 20-56 (81)
233 1x5u_A Splicing factor 3B subu 36.8 22 0.00076 25.5 2.8 38 126-163 29-66 (105)
234 2rs2_A Musashi-1, RNA-binding 36.1 23 0.00078 26.0 2.7 39 125-163 38-76 (109)
235 1axh_A Atracotoxin-HVI, ACTX-H 35.3 28 0.00095 20.9 2.4 14 47-60 22-35 (37)
236 3ns6_A Eukaryotic translation 34.9 14 0.00047 26.8 1.3 41 123-163 23-63 (100)
237 2cqd_A RNA-binding region cont 34.7 31 0.001 25.3 3.3 38 126-163 31-68 (116)
238 1nc8_A Nucleocapsid protein; H 33.7 12 0.00041 21.2 0.6 20 138-158 5-24 (29)
239 2dgs_A DAZ-associated protein 33.6 22 0.00077 25.2 2.3 38 126-163 24-61 (99)
240 1whw_A Hypothetical protein ri 33.3 23 0.00079 25.1 2.3 38 126-163 22-59 (99)
241 3s8s_A Histone-lysine N-methyl 32.9 12 0.00041 27.9 0.7 39 125-163 19-57 (110)
242 2dnm_A SRP46 splicing factor; 32.6 24 0.00084 25.2 2.4 38 126-163 27-64 (103)
243 4e8u_A Putative uncharacterize 31.8 1.1E+02 0.0038 25.0 6.4 55 213-270 14-80 (172)
244 3kvp_A Uncharacterized protein 31.0 1.3E+02 0.0045 20.8 5.8 17 48-64 42-58 (72)
245 2ftc_N Mitochondrial ribosomal 28.9 51 0.0017 24.4 3.6 24 40-63 68-91 (96)
246 1x4h_A RNA-binding protein 28; 28.8 24 0.00082 25.6 1.8 39 125-163 28-66 (111)
247 2khc_A Testis-specific RNP-typ 28.5 29 0.001 25.5 2.2 39 125-163 53-91 (118)
248 2cph_A RNA binding motif prote 28.3 27 0.00094 25.0 2.0 38 126-163 29-67 (107)
249 2h1z_A Hybrid atracotoxin; bet 28.1 39 0.0013 20.5 2.2 14 47-60 23-36 (39)
250 2e5h_A Zinc finger CCHC-type a 27.6 41 0.0014 23.3 2.8 38 126-163 30-67 (94)
251 1s79_A Lupus LA protein; RRM, 26.6 25 0.00087 25.7 1.5 38 125-163 24-61 (103)
252 2dh8_A DAZ-associated protein 26.6 18 0.00063 26.0 0.7 39 125-163 29-67 (105)
253 2kxn_B Transformer-2 protein h 26.4 31 0.0011 26.3 2.1 39 125-163 59-97 (129)
254 2dnz_A Probable RNA-binding pr 26.2 33 0.0011 23.9 2.1 38 126-163 19-56 (95)
255 3ex7_B RNA-binding protein 8A; 25.8 34 0.0012 25.4 2.2 39 125-163 35-73 (126)
256 2jwn_A Embryonic polyadenylate 25.7 28 0.00096 25.8 1.7 39 125-163 49-87 (124)
257 2fy1_A RNA-binding motif prote 25.3 32 0.0011 25.6 1.9 38 125-163 20-57 (116)
258 2cqb_A Peptidyl-prolyl CIS-tra 24.7 32 0.0011 24.5 1.8 38 126-163 26-63 (102)
259 1x4b_A Heterogeneous nuclear r 24.7 28 0.00097 25.5 1.5 39 125-163 40-78 (116)
260 2lea_A Serine/arginine-rich sp 23.9 68 0.0023 24.4 3.7 39 125-163 60-98 (135)
261 3pgw_S U1-70K; protein-RNA com 23.8 35 0.0012 32.1 2.2 39 125-163 115-153 (437)
262 1oo0_B CG8781-PA, drosophila Y 22.0 34 0.0012 24.7 1.5 38 126-163 40-77 (110)
263 3q2s_C Cleavage and polyadenyl 21.7 43 0.0015 28.3 2.3 39 125-163 81-121 (229)
264 3v2d_Y 50S ribosomal protein L 20.9 34 0.0012 26.0 1.2 25 38-62 75-100 (110)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=155.41 Aligned_cols=83 Identities=34% Similarity=0.577 Sum_probs=80.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||.++++++|+++|++||.|.+|.+++++.||.++|||||+|.+.++|++||+.|||..++|+.|+|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 022742 289 TPR 291 (293)
Q Consensus 289 kpk 291 (293)
+|.
T Consensus 97 kPS 99 (99)
T 4fxv_A 97 RPS 99 (99)
T ss_dssp CBC
T ss_pred eCC
Confidence 985
No 2
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=2.2e-20 Score=138.65 Aligned_cols=82 Identities=30% Similarity=0.526 Sum_probs=79.7
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 291 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akpk 291 (293)
.+|||+|||.++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|++|+..|||..++|+.|+|.||+|+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 022742 292 TN 293 (293)
Q Consensus 292 ~~ 293 (293)
++
T Consensus 82 ~~ 83 (83)
T 3md1_A 82 EH 83 (83)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 3
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=140.59 Aligned_cols=84 Identities=36% Similarity=0.576 Sum_probs=77.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|.||
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
++++
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 9875
No 4
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=144.18 Aligned_cols=86 Identities=62% Similarity=1.086 Sum_probs=82.3
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 207 RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 207 ~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
...+.++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 022742 287 WATPRT 292 (293)
Q Consensus 287 ~Akpk~ 292 (293)
|++++.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 999875
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=147.03 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=79.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||+++++++|+++|++||.|.+|.|++|+.||+++|||||+|.+.++|++||+.|||..++|+.|+|++|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 022742 289 TPR 291 (293)
Q Consensus 289 kpk 291 (293)
.+.
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 764
No 6
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=148.43 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=77.7
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCC-CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHh-CCceeCCeEEEEEec
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFG-AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKL-NGYGYDNLILRVEWA 288 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G-~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~L-ng~~i~g~~L~V~~A 288 (293)
+++|||+|||.++++++|+++|++|| .|.+|+|++++.||.++|||||+|.+.++|++||+.| |+..++|+.|+|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 7999999999999999999999999999999999877 456899999999999
Q ss_pred cCCCC
Q 022742 289 TPRTN 293 (293)
Q Consensus 289 kpk~~ 293 (293)
+|+++
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 99863
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5e-20 Score=152.24 Aligned_cols=154 Identities=23% Similarity=0.319 Sum_probs=109.6
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCCCCCCcccCCCCc
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPPGMRAGAERTGTD 204 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp~~r~~~~~~~~~ 204 (293)
.++.|..+|+.+|.+..|+++..+.. -...+.|..+... +.+..+.....+..+....-.-.......
T Consensus 13 t~~~l~~~f~~~G~i~~v~i~~~~~~-~~~g~afV~f~~~-----------~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 13 TEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQS-----------HDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSH-----------HHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCC-CCCCEEEEEeCCH-----------HHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 34678899999999999999864221 1233445555432 11111111122222211000000000111
Q ss_pred cccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 205 MRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 205 ~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
.....+.++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||.|.+.++|.+|+..|||..++|+.|+
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 12345678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccC
Q 022742 285 VEWATP 290 (293)
Q Consensus 285 V~~Akp 290 (293)
|.||++
T Consensus 161 v~~a~~ 166 (166)
T 3md3_A 161 INWAAK 166 (166)
T ss_dssp EEESCC
T ss_pred EEecCC
Confidence 999975
No 8
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=8.9e-20 Score=143.95 Aligned_cols=86 Identities=36% Similarity=0.582 Sum_probs=82.0
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 207 RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 207 ~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
...+.++|||+|||..+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|++||+.|||..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 022742 287 WATPRT 292 (293)
Q Consensus 287 ~Akpk~ 292 (293)
|++++.
T Consensus 91 ~a~~~~ 96 (115)
T 2dgo_A 91 WATRKP 96 (115)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 999764
No 9
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8e-20 Score=138.98 Aligned_cols=83 Identities=35% Similarity=0.496 Sum_probs=79.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+..|||..++|+.|+|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 022742 288 ATP 290 (293)
Q Consensus 288 Akp 290 (293)
|++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 986
No 10
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=1.2e-19 Score=143.31 Aligned_cols=85 Identities=31% Similarity=0.544 Sum_probs=81.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|++||+.|||..|+|+.|+|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
++++.
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 99875
No 11
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=144.11 Aligned_cols=84 Identities=20% Similarity=0.413 Sum_probs=78.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCC--eeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCc----eeCCe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGA--VSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGY----GYDNL 281 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~--i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~----~i~g~ 281 (293)
...-.+|||+|||+++++++|+++|++||. +..|++++|+.||++||||||+|.+.++|++||+.|||. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 355689999999999999999999999996 568999999999999999999999999999999999996 59999
Q ss_pred EEEEEeccCC
Q 022742 282 ILRVEWATPR 291 (293)
Q Consensus 282 ~L~V~~Akpk 291 (293)
+|+|+||+..
T Consensus 86 ~i~V~~Akss 95 (95)
T 2lkz_A 86 TIGVDFAKSA 95 (95)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEccCC
Confidence 9999999863
No 12
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.4e-20 Score=143.27 Aligned_cols=86 Identities=35% Similarity=0.501 Sum_probs=82.0
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 207 RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 207 ~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
.....++|||+|||.++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++||..|||..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 022742 287 WATPRT 292 (293)
Q Consensus 287 ~Akpk~ 292 (293)
||+++.
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 999875
No 13
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=138.78 Aligned_cols=84 Identities=18% Similarity=0.405 Sum_probs=80.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|++||+.|||..++|+.|+|.|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+|++
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 99875
No 14
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.2e-20 Score=140.70 Aligned_cols=84 Identities=27% Similarity=0.489 Sum_probs=80.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+ |||..++|+.|+|.|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3567999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
++|+.
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 99875
No 15
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=9e-20 Score=138.58 Aligned_cols=82 Identities=26% Similarity=0.422 Sum_probs=79.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|||..++|+.|+|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 022742 288 AT 289 (293)
Q Consensus 288 Ak 289 (293)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 16
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=143.96 Aligned_cols=86 Identities=30% Similarity=0.553 Sum_probs=82.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||..+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|+|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 022742 288 ATPRTN 293 (293)
Q Consensus 288 Akpk~~ 293 (293)
++++.+
T Consensus 103 a~~k~d 108 (108)
T 2jrs_A 103 VTERTD 108 (108)
T ss_dssp SCSSCC
T ss_pred cccCCC
Confidence 999875
No 17
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8.8e-20 Score=142.82 Aligned_cols=85 Identities=31% Similarity=0.467 Sum_probs=81.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhC------CceeCCe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLN------GYGYDNL 281 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Ln------g~~i~g~ 281 (293)
..+.++|||+|||+++++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|++||..|| |..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEeccCCC
Q 022742 282 ILRVEWATPRT 292 (293)
Q Consensus 282 ~L~V~~Akpk~ 292 (293)
.|+|.|++++.
T Consensus 92 ~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 QLKVDLAVTRD 102 (111)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCc
Confidence 99999999875
No 18
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.6e-20 Score=141.93 Aligned_cols=85 Identities=31% Similarity=0.475 Sum_probs=81.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
++|+.
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99875
No 19
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8e-20 Score=139.13 Aligned_cols=84 Identities=32% Similarity=0.571 Sum_probs=80.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++||+.|||..++|+.|+|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
+++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 9875
No 20
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.9e-20 Score=141.78 Aligned_cols=85 Identities=25% Similarity=0.473 Sum_probs=81.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|++||..|||..++|+.|+|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|++++
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 99875
No 21
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=8.5e-20 Score=136.04 Aligned_cols=81 Identities=31% Similarity=0.477 Sum_probs=78.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||.++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|++|++.|||..++|+.|+|+||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 022742 289 T 289 (293)
Q Consensus 289 k 289 (293)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 22
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=8.8e-20 Score=140.08 Aligned_cols=84 Identities=30% Similarity=0.449 Sum_probs=81.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||.++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++||..|||..++|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
+++.
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 9875
No 23
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=9e-20 Score=139.52 Aligned_cols=82 Identities=26% Similarity=0.500 Sum_probs=79.5
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATP 290 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akp 290 (293)
.++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|.||++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 022742 291 RT 292 (293)
Q Consensus 291 k~ 292 (293)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 24
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5.8e-20 Score=142.23 Aligned_cols=85 Identities=32% Similarity=0.476 Sum_probs=81.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++.|+.++|||||+|.+.++|++||..|||..|+|+.|+|.|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+++.
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 99763
No 25
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=2.2e-19 Score=139.04 Aligned_cols=83 Identities=24% Similarity=0.358 Sum_probs=79.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++|| |..|.|++++.++.++|||||+|.+.++|++|| .|||..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45678999999999999999999999997 999999999999999999999999999999999 8999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
++++.
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 99875
No 26
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=2.8e-20 Score=162.31 Aligned_cols=153 Identities=21% Similarity=0.292 Sum_probs=108.6
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCC-CCCCcccCCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPP-GMRAGAERTGT 203 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp-~~r~~~~~~~~ 203 (293)
+++.|..+|+.+|.+..|+++.++...-...|.|..+... +.+..+.....+..+.- ..+... ....
T Consensus 28 te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~-----------~~A~~Ai~~~~~~~~~g~~i~~~~-~~~~ 95 (213)
T 4f02_A 28 TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP-----------ADAERALDTMNFDVIKGKPVRIMW-SQRD 95 (213)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH-----------HHHHHHHHHHTTCEETTEECEEEE-CCCC
T ss_pred CHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCH-----------HHHHHHHHHhhhhhcCCccccccc-cccc
Confidence 3467999999999999999987433334445666666542 11111111112221110 001000 0001
Q ss_pred ccccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 022742 204 DMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLIL 283 (293)
Q Consensus 204 ~~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L 283 (293)
........++|||+|||..+++++|+++|++||.|..+.|++++ +.++|||||.|.+.++|++||+.|||..|+|+.|
T Consensus 96 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i 173 (213)
T 4f02_A 96 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 173 (213)
T ss_dssp THHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 11122346799999999999999999999999999999999984 5589999999999999999999999999999999
Q ss_pred EEEeccCC
Q 022742 284 RVEWATPR 291 (293)
Q Consensus 284 ~V~~Akpk 291 (293)
+|.||+|+
T Consensus 174 ~V~~a~~~ 181 (213)
T 4f02_A 174 FVGRFKSR 181 (213)
T ss_dssp EEEECCCH
T ss_pred EEEEcCCC
Confidence 99999875
No 27
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=9.7e-20 Score=141.65 Aligned_cols=85 Identities=32% Similarity=0.581 Sum_probs=81.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEec-CCCCCeeeEEEEEEcCHHHHHHHHHHh-CCceeCCeEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD-QKTGISRGFGFVNFVNKEDAQRAINKL-NGYGYDNLILRV 285 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d-~~tg~~rGfAFV~F~~~e~A~~Ai~~L-ng~~i~g~~L~V 285 (293)
....++|||+|||.++++++|+++|++||.|..|.|+++ +.++.++|||||+|.+.++|++||..| ||..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456799999999999999999999999999999999999 789999999999999999999999999 999999999999
Q ss_pred EeccCCC
Q 022742 286 EWATPRT 292 (293)
Q Consensus 286 ~~Akpk~ 292 (293)
.||+++.
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9999875
No 28
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.6e-20 Score=141.93 Aligned_cols=85 Identities=40% Similarity=0.570 Sum_probs=81.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++||+.|||..|+|+.|+|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+++.
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 99875
No 29
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=139.18 Aligned_cols=83 Identities=31% Similarity=0.516 Sum_probs=79.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+ +|.++|||||+|.+.++|++||..|||..++|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 457899999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+++.
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 99875
No 30
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=142.83 Aligned_cols=85 Identities=22% Similarity=0.426 Sum_probs=81.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCee--------EEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVS--------RVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD 279 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~--------~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~ 279 (293)
..+.++|||+|||.++++++|+++|++||.|. .|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 46779999999999999999999999999998 6999999999999999999999999999999999999999
Q ss_pred CeEEEEEeccCCC
Q 022742 280 NLILRVEWATPRT 292 (293)
Q Consensus 280 g~~L~V~~Akpk~ 292 (293)
|+.|+|.|++++.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999999875
No 31
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=2.7e-19 Score=138.79 Aligned_cols=84 Identities=31% Similarity=0.471 Sum_probs=79.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC---eEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN---LILR 284 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g---~~L~ 284 (293)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|++||+.|||..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3567999999999999999999999999999999999997 79999999999999999999999999999998 9999
Q ss_pred EEeccCCC
Q 022742 285 VEWATPRT 292 (293)
Q Consensus 285 V~~Akpk~ 292 (293)
|.||+++.
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99999875
No 32
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=2.4e-20 Score=141.32 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=73.1
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCC--CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFG--AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G--~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
.+|||+|||.++++++|+++|++|| .|.++.++.++.+|+++|||||+|.+.++|++||+.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 022742 290 PRT 292 (293)
Q Consensus 290 pk~ 292 (293)
|.+
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 864
No 33
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.8e-20 Score=139.46 Aligned_cols=84 Identities=26% Similarity=0.452 Sum_probs=80.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEE-EEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRV-YVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v-~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
.+.++|||+|||.++++++|+++|++||.|..+ .+++++.++.++|||||+|.+.++|++||..|||..++|+.|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 99875
No 34
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=138.31 Aligned_cols=84 Identities=29% Similarity=0.437 Sum_probs=79.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCC---CCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQK---TGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRV 285 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~---tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V 285 (293)
.+.++|||+|||.++++++|+++|++||.|..|.++.++. |+.++|||||+|.+.++|++||..|||..|+|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999999887 7799999999999999999999999999999999999
Q ss_pred EeccCCC
Q 022742 286 EWATPRT 292 (293)
Q Consensus 286 ~~Akpk~ 292 (293)
.|++++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9999864
No 35
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=2.2e-20 Score=144.57 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=79.1
Q ss_pred CCceEEEecCCC------CCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC-eE
Q 022742 210 DENSVRVTNLSE------DTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN-LI 282 (293)
Q Consensus 210 ~~~~v~V~nLp~------~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g-~~ 282 (293)
..++|||+|||. ++++++|+++|++||.|.+|.|++++.||+++|||||+|.+.++|++||+.|||..++| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEeccCC
Q 022742 283 LRVEWATPR 291 (293)
Q Consensus 283 L~V~~Akpk 291 (293)
|+|.+|.|+
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999875
No 36
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.80 E-value=3.5e-20 Score=153.95 Aligned_cols=152 Identities=17% Similarity=0.307 Sum_probs=111.9
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCCCCCCcccCCCCc
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPPGMRAGAERTGTD 204 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp~~r~~~~~~~~~ 204 (293)
.++.|..+|+.+|.+..|++...+...-...+.|..+.... .+..+........|+.+.......
T Consensus 16 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~--------~a~~A~~~~~~~~g~~i~v~~~~~------- 80 (167)
T 2cjk_A 16 TEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPS--------SVDEVVKTQHILDGKVIDPKRAIP------- 80 (167)
T ss_dssp CHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTH--------HHHHHHHSCCEETTEECCCEECCC-------
T ss_pred CHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHH--------HHHHHHhcccccCCeEcccccccc-------
Confidence 34679999999999999999864323333445555554421 122222211123333332211110
Q ss_pred cccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 205 MRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 205 ~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
.......++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++ +||..++|+.|+
T Consensus 81 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 159 (167)
T 2cjk_A 81 RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIE 159 (167)
T ss_dssp HHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEE
T ss_pred hhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEE
Confidence 1112346799999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred EEeccCCC
Q 022742 285 VEWATPRT 292 (293)
Q Consensus 285 V~~Akpk~ 292 (293)
|.||.|+.
T Consensus 160 V~~a~pk~ 167 (167)
T 2cjk_A 160 IKRAEPRH 167 (167)
T ss_dssp EEECCCCC
T ss_pred EeecCCCC
Confidence 99999984
No 37
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=2.9e-19 Score=141.65 Aligned_cols=82 Identities=32% Similarity=0.528 Sum_probs=78.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++||+.|||..|+|+.|+|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 022742 288 AT 289 (293)
Q Consensus 288 Ak 289 (293)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 38
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=1.8e-19 Score=141.09 Aligned_cols=85 Identities=24% Similarity=0.474 Sum_probs=81.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|++||..|||..++|+.|+|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 99875
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=2.7e-19 Score=141.85 Aligned_cols=80 Identities=30% Similarity=0.500 Sum_probs=75.7
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATP 290 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akp 290 (293)
.++|||+|||+++++++|+++|++||.|.+|.|++++ +.++|||||+|.+.++|++||+.|||..|+|+.|+|.|+++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5789999999999999999999999999999999985 45899999999999999999999999999999999999987
Q ss_pred CC
Q 022742 291 RT 292 (293)
Q Consensus 291 k~ 292 (293)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 40
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=139.14 Aligned_cols=83 Identities=24% Similarity=0.375 Sum_probs=79.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCC-CCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKT-GISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~t-g~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
..+.++|||+|||.++++++|+++|++|| |..|.|++++.+ |.++|||||+|.+.++|++|| .|||..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 999999999988 999999999999999999999 899999999999999
Q ss_pred eccCCC
Q 022742 287 WATPRT 292 (293)
Q Consensus 287 ~Akpk~ 292 (293)
||+++.
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 999875
No 41
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=137.25 Aligned_cols=82 Identities=24% Similarity=0.438 Sum_probs=78.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeE--------EEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSR--------VYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD 279 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~--------v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~ 279 (293)
....++|||+|||.++++++|+++|++||.|.. +.++.++.+|.++|||||+|.+.++|++||+.|||..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 456799999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CeEEEEEecc
Q 022742 280 NLILRVEWAT 289 (293)
Q Consensus 280 g~~L~V~~Ak 289 (293)
|+.|+|+||+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 42
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=139.34 Aligned_cols=85 Identities=25% Similarity=0.343 Sum_probs=81.1
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 207 RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 207 ~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||.. ||..|+|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 356789999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred eccCCC
Q 022742 287 WATPRT 292 (293)
Q Consensus 287 ~Akpk~ 292 (293)
|++|+.
T Consensus 91 ~a~~~~ 96 (105)
T 2dh8_A 91 PCTPRG 96 (105)
T ss_dssp CSCCSS
T ss_pred EccCCC
Confidence 999875
No 43
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=138.16 Aligned_cols=85 Identities=22% Similarity=0.361 Sum_probs=80.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCee-EEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeE----
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVS-RVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLI---- 282 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~-~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~---- 282 (293)
....++|||+|||.++++++|+++|++||.|. .+.+++++.++.++|||||+|.+.++|++|++.|||..++|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 35679999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 022742 283 LRVEWATPRT 292 (293)
Q Consensus 283 L~V~~Akpk~ 292 (293)
|+|.||++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999999764
No 44
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.7e-19 Score=135.85 Aligned_cols=83 Identities=35% Similarity=0.572 Sum_probs=77.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++. .++|||||+|.+.++|++||..|||..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 46679999999999999999999999999999999998864 3899999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
++++.
T Consensus 90 a~~~~ 94 (103)
T 2cq3_A 90 ATARV 94 (103)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 99875
No 45
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=1.4e-19 Score=140.68 Aligned_cols=85 Identities=25% Similarity=0.385 Sum_probs=80.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCcee---CCeEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGY---DNLILR 284 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i---~g~~L~ 284 (293)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..+ +|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999988 899999
Q ss_pred EEeccCCC
Q 022742 285 VEWATPRT 292 (293)
Q Consensus 285 V~~Akpk~ 292 (293)
|.|++++.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99999864
No 46
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6e-19 Score=136.47 Aligned_cols=84 Identities=26% Similarity=0.437 Sum_probs=78.1
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 207 RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 207 ~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
...+.++|||+|||.++++++|+++|++||.|..|.|++++.+ ++|||||+|.+.++|++||..|||..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 4567899999999999999999999999999999999998543 68999999999999999999999999999999999
Q ss_pred eccCCC
Q 022742 287 WATPRT 292 (293)
Q Consensus 287 ~Akpk~ 292 (293)
|++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 999864
No 47
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3e-19 Score=136.82 Aligned_cols=84 Identities=14% Similarity=0.265 Sum_probs=79.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45689999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
+++.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8653
No 48
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.80 E-value=4.5e-19 Score=153.16 Aligned_cols=160 Identities=18% Similarity=0.261 Sum_probs=111.2
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHH-hcC-CCCCCcC--CCCCCCcccC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAA-AAG-ATKGTYV--PPGMRAGAER 200 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~-~~~-~~~g~yv--pp~~r~~~~~ 200 (293)
.++.|..+|+.+|.+..|+++.++...-...|.|..+.... .+..+.. ..+ ...++.+ ..........
T Consensus 41 t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~--------~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~ 112 (216)
T 2qfj_A 41 GEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPE--------AAQLALEQMNSVMLGGRNIKVGRPSNIGQAQ 112 (216)
T ss_dssp CHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHH--------HHHHHHHHHSSCCCC-CCCEEECCSCCGGGH
T ss_pred CHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHH--------HHHHHHHHccCCeeCCeeEEEecCCCccccc
Confidence 34678999999999999999864323333445555554421 1111111 111 1122211 0000000000
Q ss_pred C--CCccccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCcee
Q 022742 201 T--GTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGY 278 (293)
Q Consensus 201 ~--~~~~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i 278 (293)
. ..........++|||+|||.++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+..|||..|
T Consensus 113 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~ 192 (216)
T 2qfj_A 113 PIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL 192 (216)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred hhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEe
Confidence 0 00001234568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeccCCC
Q 022742 279 DNLILRVEWATPRT 292 (293)
Q Consensus 279 ~g~~L~V~~Akpk~ 292 (293)
+|+.|+|.||++++
T Consensus 193 ~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 193 GGQYLRVGKAVTPP 206 (216)
T ss_dssp SSSBCEEEECSSCS
T ss_pred CCcEEEEEEecCCC
Confidence 99999999999874
No 49
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.1e-19 Score=132.45 Aligned_cols=83 Identities=17% Similarity=0.301 Sum_probs=78.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||+|||.++++++|+++|++| .|..|.|+++ .+|+++|||||+|.+.++|++||. |||..++|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 789999999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 022742 288 ATPRTN 293 (293)
Q Consensus 288 Akpk~~ 293 (293)
|+++++
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 998763
No 50
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=133.32 Aligned_cols=83 Identities=18% Similarity=0.426 Sum_probs=78.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCC-eeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGI-SRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~-~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
..++|||+|||.++++++|+++|++||.|..+.++.++.++. ++|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999988776 9999999999999999999999999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
.|..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8864
No 51
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=136.78 Aligned_cols=83 Identities=29% Similarity=0.300 Sum_probs=78.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||+|||.++++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|++||+.|||..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4567899999999999999999999999999999999997 599999999999999999999999999999999999999
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
+++.
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 9753
No 52
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=5.3e-19 Score=134.55 Aligned_cols=82 Identities=32% Similarity=0.450 Sum_probs=77.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||..+++++|+++|++||.|..|.++.++. |.++|||||+|.+.++|++||+.|||..++|+.|+|.|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 45678999999999999999999999999999999999976 99999999999999999999999999999999999999
Q ss_pred ccC
Q 022742 288 ATP 290 (293)
Q Consensus 288 Akp 290 (293)
|+.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 975
No 53
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=5e-19 Score=132.95 Aligned_cols=82 Identities=23% Similarity=0.400 Sum_probs=78.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
+.++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+ .|||..++|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999999999999999999999999999999999 899999999999999998
Q ss_pred CCC
Q 022742 290 PRT 292 (293)
Q Consensus 290 pk~ 292 (293)
+..
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 753
No 54
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=141.39 Aligned_cols=84 Identities=30% Similarity=0.471 Sum_probs=80.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|++||+.|||..++|+.|+|+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+++.
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98764
No 55
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=3.2e-19 Score=144.63 Aligned_cols=85 Identities=34% Similarity=0.527 Sum_probs=81.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++||..|||..|+|+.|+|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
++++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 99875
No 56
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-18 Score=133.66 Aligned_cols=83 Identities=31% Similarity=0.410 Sum_probs=78.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||. +++.++|+.|+|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999998 58899999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 99875
No 57
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=1.4e-18 Score=130.18 Aligned_cols=80 Identities=30% Similarity=0.485 Sum_probs=76.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|++||+ +++..++|+.|+|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999996 688999999999998
Q ss_pred c
Q 022742 288 A 288 (293)
Q Consensus 288 A 288 (293)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 58
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=137.64 Aligned_cols=84 Identities=30% Similarity=0.494 Sum_probs=79.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcC-CCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCce-eCCeEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRP-FGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYG-YDNLILRV 285 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~-~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~-i~g~~L~V 285 (293)
..+.++|||+|||.++++++|+++|++ ||.|..|.|+.++ +|.++|||||+|.+.++|++||+.|||.. ++|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 356789999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred EeccCCC
Q 022742 286 EWATPRT 292 (293)
Q Consensus 286 ~~Akpk~ 292 (293)
.|++++.
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9998764
No 59
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.2e-19 Score=138.07 Aligned_cols=85 Identities=27% Similarity=0.396 Sum_probs=78.8
Q ss_pred CCCCceEEEecCCCCCCHHHHH---HhhcCCCCeeEEEEEecCCCC---CeeeEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 022742 208 RNDENSVRVTNLSEDTREPDLL---ELFRPFGAVSRVYVAVDQKTG---ISRGFGFVNFVNKEDAQRAINKLNGYGYDNL 281 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~---~lF~~~G~i~~v~l~~d~~tg---~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~ 281 (293)
..+.++|||+|||+++++++|+ ++|++||.|..|.+++++.++ .++|||||+|.+.++|++||+.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4567899999999999999999 999999999999999988754 5669999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q 022742 282 ILRVEWATPRT 292 (293)
Q Consensus 282 ~L~V~~Akpk~ 292 (293)
.|+|.||+++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999999875
No 60
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.8e-19 Score=135.32 Aligned_cols=82 Identities=24% Similarity=0.277 Sum_probs=77.2
Q ss_pred CCCceEEEecCCCCCCHHHHH----HhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 209 NDENSVRVTNLSEDTREPDLL----ELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~----~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
.+.++|||+|||.++++++|+ ++|++||.|.+|.++.++.+ +|||||+|.+.++|++||+.|||..++|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456899999999999999999 99999999999999998775 89999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 022742 285 VEWATPRTN 293 (293)
Q Consensus 285 V~~Akpk~~ 293 (293)
|.||+|+.+
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999998753
No 61
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=4.6e-19 Score=148.38 Aligned_cols=83 Identities=23% Similarity=0.305 Sum_probs=78.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCC--CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFG--AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G--~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
.+.++|||+|||+++++++|+++|++|| .|..|.|+.|+.||.++|||||+|.+.++|++||..|||..|+|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 022742 287 WATPR 291 (293)
Q Consensus 287 ~Akpk 291 (293)
+|.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99864
No 62
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-19 Score=140.75 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=78.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|| .|||..|+|+.|+|.|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred cCC
Q 022742 289 TPR 291 (293)
Q Consensus 289 kpk 291 (293)
+++
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 865
No 63
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=8.4e-19 Score=149.26 Aligned_cols=157 Identities=18% Similarity=0.247 Sum_probs=105.6
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhc-CCCCCCcCCCCCCCcccCCCCc
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAA-GATKGTYVPPGMRAGAERTGTD 204 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~yvpp~~r~~~~~~~~~ 204 (293)
++.|..+|+.+|.+..|+++..+...-...+.|..+.... .+..+.... ....|+.+........ .....
T Consensus 27 e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~--------~A~~A~~~~~~~~~g~~l~v~~~~~~-~~~~~ 97 (196)
T 1l3k_A 27 DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE--------EVDAAMNARPHKVDGRVVEPKRAVSR-EDSQR 97 (196)
T ss_dssp HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH--------HHHHHHHTCSCEETTEECEEEECCC-------
T ss_pred HHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHH--------HHHHHHhcCCCEECCEEeeeecccCc-ccccc
Confidence 4578899999999999999864322223345555554421 111111110 0111221110000000 00011
Q ss_pred cccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 205 MRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 205 ~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
.......++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||.|.+.++|.+||.. +|..|+|+.|.
T Consensus 98 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~ 176 (196)
T 1l3k_A 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCE 176 (196)
T ss_dssp -----CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECE
T ss_pred cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEE
Confidence 11234568999999999999999999999999999999999999999999999999999999999975 89999999999
Q ss_pred EEeccCCC
Q 022742 285 VEWATPRT 292 (293)
Q Consensus 285 V~~Akpk~ 292 (293)
|.||.|+.
T Consensus 177 v~~a~~k~ 184 (196)
T 1l3k_A 177 VRKALSKQ 184 (196)
T ss_dssp EEECC---
T ss_pred EEecCChh
Confidence 99999875
No 64
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.7e-19 Score=138.55 Aligned_cols=83 Identities=29% Similarity=0.398 Sum_probs=79.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|++||+.||+ .|+|+.|+|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
|+++
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9764
No 65
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.1e-19 Score=137.41 Aligned_cols=83 Identities=30% Similarity=0.512 Sum_probs=80.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
+.++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|.||+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 022742 290 PRT 292 (293)
Q Consensus 290 pk~ 292 (293)
++.
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 864
No 66
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=142.10 Aligned_cols=85 Identities=32% Similarity=0.493 Sum_probs=81.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||+|||.++++++|+++|+.||.|..|.|++++.+|.++|||||+|.+.++|++||+.|||..|+|+.|+|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+++.
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 99864
No 67
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=4.5e-19 Score=134.92 Aligned_cols=82 Identities=15% Similarity=0.274 Sum_probs=76.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 022742 289 TP 290 (293)
Q Consensus 289 kp 290 (293)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 68
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=1.7e-18 Score=134.62 Aligned_cols=81 Identities=30% Similarity=0.440 Sum_probs=77.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||+|||..+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|++||+.|||..++|+.|+|+|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cc
Q 022742 288 AT 289 (293)
Q Consensus 288 Ak 289 (293)
|.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 69
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1e-18 Score=132.11 Aligned_cols=82 Identities=26% Similarity=0.298 Sum_probs=77.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||.++++++|+++|++||.|..+.+.++ +|.++|||||+|.+.++|++|++.|||..++|+.|+|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56789999999999999999999999999999999874 7999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
++..
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 9874
No 70
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-18 Score=134.81 Aligned_cols=84 Identities=26% Similarity=0.470 Sum_probs=79.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCcee--------C
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGY--------D 279 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i--------~ 279 (293)
..+.++|||+|||.++++++|+++|++||.|..+.|+.++ +|.++|||||+|.+.++|++||..|||..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999 5
Q ss_pred CeEEEEEeccCCC
Q 022742 280 NLILRVEWATPRT 292 (293)
Q Consensus 280 g~~L~V~~Akpk~ 292 (293)
+++|.|.||.|+.
T Consensus 101 ~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 101 TEPLLCKFSGPSS 113 (114)
T ss_dssp SSCBEEEECCCSC
T ss_pred CCceeEEccCCCC
Confidence 7889999999874
No 71
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=141.11 Aligned_cols=82 Identities=30% Similarity=0.468 Sum_probs=77.9
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 207 RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 207 ~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
...+.++|||+|||.++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 022742 287 WA 288 (293)
Q Consensus 287 ~A 288 (293)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 72
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=6.2e-19 Score=141.25 Aligned_cols=85 Identities=25% Similarity=0.473 Sum_probs=80.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|+|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+++.
T Consensus 99 a~~~~ 103 (126)
T 3ex7_B 99 CFVRG 103 (126)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 73
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-18 Score=132.39 Aligned_cols=82 Identities=35% Similarity=0.551 Sum_probs=76.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++|+ .+.++.++.++.++|||||+|.+.++|++||+.|||..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 46679999999999999999999999874 678888988999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+|+.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 99875
No 74
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-19 Score=138.19 Aligned_cols=84 Identities=24% Similarity=0.380 Sum_probs=77.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecC-CCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQ-KTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~-~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
....++|||+|||.++++++|+++|++|| |..|.+++++ .+|+++|||||+|.+.++|++|| .|||..++|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 35679999999999999999999999999 9999999998 68999999999999999999999 899999999999999
Q ss_pred eccCCCC
Q 022742 287 WATPRTN 293 (293)
Q Consensus 287 ~Akpk~~ 293 (293)
||+++.+
T Consensus 94 ~a~~~~~ 100 (100)
T 2j76_E 94 VADQAQD 100 (100)
T ss_dssp ECCCSCC
T ss_pred eccCCCC
Confidence 9999864
No 75
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.77 E-value=2.7e-18 Score=142.68 Aligned_cols=85 Identities=28% Similarity=0.499 Sum_probs=81.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|+|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|++..
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 98754
No 76
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-19 Score=145.25 Aligned_cols=84 Identities=24% Similarity=0.450 Sum_probs=79.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeE--EEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCc----eeCCe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSR--VYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGY----GYDNL 281 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~--v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~----~i~g~ 281 (293)
....++|||+|||+++++++|+++|++||.|.. |+|++|+.||+++|||||+|.+. +|.+||..|||. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEeccCCC
Q 022742 282 ILRVEWATPRT 292 (293)
Q Consensus 282 ~L~V~~Akpk~ 292 (293)
.|+|.||+++.
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999999864
No 77
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-19 Score=133.49 Aligned_cols=82 Identities=23% Similarity=0.480 Sum_probs=78.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|++.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cC
Q 022742 289 TP 290 (293)
Q Consensus 289 kp 290 (293)
.+
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 78
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.4e-18 Score=136.50 Aligned_cols=84 Identities=29% Similarity=0.408 Sum_probs=76.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++||..+ |..++|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 356789999999999999999999999999999999999999999999999999999999999865 5999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
+.++.
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 99875
No 79
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=6.1e-18 Score=135.31 Aligned_cols=84 Identities=25% Similarity=0.405 Sum_probs=79.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||+|||.++++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|++|+..|||..++|+.|+|+|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 98753
No 80
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.77 E-value=2.5e-18 Score=142.58 Aligned_cols=149 Identities=23% Similarity=0.307 Sum_probs=106.3
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCCC-CCCcccCCCCc
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPPG-MRAGAERTGTD 204 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp~-~r~~~~~~~~~ 204 (293)
++.|..+|+.+|.+..|++...+...-...+.|..+.... .+..+. ....+..+... ++-.. ...
T Consensus 17 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~--------~A~~a~---~~l~~~~~~g~~l~v~~---~~~ 82 (168)
T 1b7f_A 17 DRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEM--------DSQRAI---KVLNGITVRNKRLKVSY---ARP 82 (168)
T ss_dssp HHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHH--------HHHHHH---HHHTTCEETTEECEEEE---CCC
T ss_pred HHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHH--------HHHHHH---HhcCCCEeCCcEEEEEe---cCC
Confidence 4578999999999999998764222223334455544321 111111 11122211100 00000 011
Q ss_pred cccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC--eE
Q 022742 205 MRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN--LI 282 (293)
Q Consensus 205 ~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g--~~ 282 (293)
.......++|||+|||..+++++|+++|++||.|..+.+++++.+|.++|||||.|.+.++|.+|+..|||..++| ++
T Consensus 83 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 162 (168)
T 1b7f_A 83 GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQP 162 (168)
T ss_dssp CSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred CcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeE
Confidence 1123456899999999999999999999999999999999999899999999999999999999999999999987 99
Q ss_pred EEEEec
Q 022742 283 LRVEWA 288 (293)
Q Consensus 283 L~V~~A 288 (293)
|+|.||
T Consensus 163 l~V~~A 168 (168)
T 1b7f_A 163 LSVRLA 168 (168)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999987
No 81
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.3e-19 Score=137.23 Aligned_cols=84 Identities=21% Similarity=0.299 Sum_probs=79.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCC-eeEEEEE-ecCCCCCeeeEEEEEEcCHHHHHHHHHHhC--CceeCCeEEE
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGA-VSRVYVA-VDQKTGISRGFGFVNFVNKEDAQRAINKLN--GYGYDNLILR 284 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~-i~~v~l~-~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Ln--g~~i~g~~L~ 284 (293)
.+.++|||+|||.++++++|+++|++||. |..+.++ .++.+|.++|||||+|.+.++|++|+..|| +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999998 888899999999999999999999999996 5899999999
Q ss_pred EEeccCCC
Q 022742 285 VEWATPRT 292 (293)
Q Consensus 285 V~~Akpk~ 292 (293)
|.||+|+.
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99999875
No 82
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=3.1e-18 Score=143.93 Aligned_cols=85 Identities=24% Similarity=0.474 Sum_probs=80.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||..+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+++.
T Consensus 149 a~~~~ 153 (165)
T 1rk8_A 149 CFVKG 153 (165)
T ss_dssp SEECC
T ss_pred ecCCC
Confidence 98764
No 83
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.2e-19 Score=137.20 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=76.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||+++++++|+++|++||.|.+|.|++++. |.++|||||+|.+.++|++||. +||..|+|+.|.|.|+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4568999999999999999999999999999999999987 9999999999999999999998 9999999999999997
Q ss_pred cC
Q 022742 289 TP 290 (293)
Q Consensus 289 kp 290 (293)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 84
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=136.87 Aligned_cols=83 Identities=24% Similarity=0.375 Sum_probs=79.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||.. ||..|+|+.|+|.|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4568999999999999999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
+++.
T Consensus 104 ~~~~ 107 (116)
T 1x4b_A 104 VARE 107 (116)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 9875
No 85
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6e-18 Score=132.25 Aligned_cols=82 Identities=30% Similarity=0.522 Sum_probs=76.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++||+.|||..|+|+.|+|+|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999654 66899999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
++++.
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 99864
No 86
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=131.57 Aligned_cols=81 Identities=28% Similarity=0.475 Sum_probs=74.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.| .++.+ .++.++|||||+|.+.++|++||..|||..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4567999999999999999999999999977 55666 6799999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
++++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 99874
No 87
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=3.1e-18 Score=136.82 Aligned_cols=83 Identities=19% Similarity=0.389 Sum_probs=78.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||.++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|++|| .|||..|+|+.|+|.|+
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
++..
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8753
No 88
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=135.38 Aligned_cols=83 Identities=35% Similarity=0.561 Sum_probs=77.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..+.++.++ +.++|||||+|.+.++|++|+..|||..++|+.|+|+|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999885 45899999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 99874
No 89
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=2.3e-19 Score=135.37 Aligned_cols=80 Identities=31% Similarity=0.491 Sum_probs=74.5
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 291 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akpk 291 (293)
++|||+|||.++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.+ |++|+..|||..++|+.|+|+||.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999999876
Q ss_pred C
Q 022742 292 T 292 (293)
Q Consensus 292 ~ 292 (293)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 90
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=3.4e-18 Score=142.49 Aligned_cols=153 Identities=19% Similarity=0.280 Sum_probs=105.3
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCC--ccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCCC-CCCc-ccC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDH--WTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPPG-MRAG-AER 200 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h--~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp~-~r~~-~~~ 200 (293)
.++.|..+|+.+|.+..|++...+... -...+.|..+... +.+..+.....+..+.+. .+.- ...
T Consensus 16 te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~-----------~~A~~A~~~l~~~~~~~~~~~~~~~~~ 84 (175)
T 3nmr_A 16 SEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTR-----------KAALEAQNALHNMKVLPGMHHPIQMKP 84 (175)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSH-----------HHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred CHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCH-----------HHHHHHHHHhcCcEEccCCccceEEcc
Confidence 346789999999999999997632211 2334455555442 111111111222222111 1100 000
Q ss_pred CCCccccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC-
Q 022742 201 TGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD- 279 (293)
Q Consensus 201 ~~~~~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~- 279 (293)
...........++|||+|||..+++++|+++|++||.|.++.+++++ +|.++|||||+|.+.++|.+|++.|||..+.
T Consensus 85 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 85 ADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp CGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred ccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 01111123457899999999999999999999999999999999985 5999999999999999999999999998776
Q ss_pred --CeEEEEEecc
Q 022742 280 --NLILRVEWAT 289 (293)
Q Consensus 280 --g~~L~V~~Ak 289 (293)
+++|+|.||.
T Consensus 164 g~~~~l~V~~ad 175 (175)
T 3nmr_A 164 GCSSPMVVKFAD 175 (175)
T ss_dssp TCSSCCEEEECC
T ss_pred CCCCCeEEEecC
Confidence 4999999983
No 91
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.75 E-value=2.3e-18 Score=143.03 Aligned_cols=84 Identities=36% Similarity=0.527 Sum_probs=80.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||+|||+++++++|+++|++||.|..|.|++++.+|.++|||||+|.+.++|++||..|||..|+|+.|+|.||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
+++.
T Consensus 148 ~~~~ 151 (158)
T 2kn4_A 148 RYGR 151 (158)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 9763
No 92
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.75 E-value=5.5e-18 Score=141.25 Aligned_cols=81 Identities=25% Similarity=0.437 Sum_probs=77.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||+|||..+++++|+++|++||.|..+.+.+++.+|.++|||||.|.+.++|++|++.|||..++|+.|+|.||
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred c
Q 022742 289 T 289 (293)
Q Consensus 289 k 289 (293)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 93
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=6.7e-19 Score=128.32 Aligned_cols=75 Identities=27% Similarity=0.426 Sum_probs=72.7
Q ss_pred eEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 213 SVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 213 ~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
+|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ |||..++|+.|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999998 9999999999999986
No 94
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=132.45 Aligned_cols=82 Identities=20% Similarity=0.306 Sum_probs=75.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||+|||+++++++|+++|++||.+ .|.|+.++ +|+++|||||+|.+.++|++||+ +|+..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4567899999999999999999999999955 99999997 89999999999999999999995 899999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 88753
No 95
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=136.92 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=77.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCe-eEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAV-SRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i-~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
..+.++|||+|||+++++++|+++|++||.| ..|.|+.++ +|+++|||||+|.+.++|++||.. ||..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3567899999999999999999999999999 899999998 899999999999999999999986 9999999999999
Q ss_pred eccCC
Q 022742 287 WATPR 291 (293)
Q Consensus 287 ~Akpk 291 (293)
+|.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99864
No 96
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.3e-18 Score=130.56 Aligned_cols=79 Identities=15% Similarity=0.305 Sum_probs=72.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHh--CCceeCCeEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKL--NGYGYDNLILRV 285 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~L--ng~~i~g~~L~V 285 (293)
..+.++|||+|||+++++++|+++|++||.|..|.++++ ||||||+|.+.++|+.|++.| ++..++|+.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 356789999999999999999999999999999988764 789999999999999999977 467899999999
Q ss_pred EeccCCC
Q 022742 286 EWATPRT 292 (293)
Q Consensus 286 ~~Akpk~ 292 (293)
.||+++.
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 9999864
No 97
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=135.30 Aligned_cols=79 Identities=15% Similarity=0.289 Sum_probs=72.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCC--ceeCCeEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNG--YGYDNLILRV 285 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng--~~i~g~~L~V 285 (293)
..+.++|||+|||+++++++|+++|++||.|.+|.|+++ ||||||+|.+.++|+.||+.|++ ..|+|++|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 356799999999999999999999999999999999865 78999999999999999998874 7899999999
Q ss_pred EeccCCC
Q 022742 286 EWATPRT 292 (293)
Q Consensus 286 ~~Akpk~ 292 (293)
.||+++.
T Consensus 87 ~~A~~~~ 93 (105)
T 1sjq_A 87 QFSNHKE 93 (105)
T ss_dssp CCCSSSS
T ss_pred EEcCCCC
Confidence 9999874
No 98
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.75 E-value=7.1e-18 Score=143.71 Aligned_cols=85 Identities=24% Similarity=0.418 Sum_probs=81.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||.|.+.++|++|++.|||..++|+.|+|.|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+|+.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 99875
No 99
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=2.3e-18 Score=141.08 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=77.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCC---eeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGA---VSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~---i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
..+.++|||+|||+++++++|+++|++||. |..|.|++++. |+++|||||+|.+.++|++||+ |||..|+|+.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 456789999999999999999999999999 88999999987 9999999999999999999999 999999999999
Q ss_pred EEeccCC
Q 022742 285 VEWATPR 291 (293)
Q Consensus 285 V~~Akpk 291 (293)
|.+|.++
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998754
No 100
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=138.41 Aligned_cols=83 Identities=19% Similarity=0.267 Sum_probs=77.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||+++++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|++||. |||..|+|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4567899999999999999999999999999887677777899999999999999999999999 999999999999999
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
|.++
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9764
No 101
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=5.5e-18 Score=139.98 Aligned_cols=149 Identities=22% Similarity=0.339 Sum_probs=105.7
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCC-CCCCcccCCCCc
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPP-GMRAGAERTGTD 204 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp-~~r~~~~~~~~~ 204 (293)
++.|..+|+.+|.+..|+++..+...-...+.|..+... +.+..+.....+..+.. .++-.. ...
T Consensus 16 ~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~-----------~~A~~a~~~l~~~~~~g~~l~v~~---~~~ 81 (167)
T 1fxl_A 16 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP-----------KDAEKAINTLNGLRLQTKTIKVSY---ARP 81 (167)
T ss_dssp HHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSH-----------HHHHHHHHHHTTCEETTEECEEEE---CCC
T ss_pred HHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCH-----------HHHHHHHHHcCCCccCCceEEEEe---cCC
Confidence 467889999999999999976432223334555555432 11111111112221110 000000 001
Q ss_pred cccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCe--E
Q 022742 205 MRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNL--I 282 (293)
Q Consensus 205 ~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~--~ 282 (293)
.......++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.|||..++|+ +
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 161 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEP 161 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccc
Confidence 11234568999999999999999999999999999999999998999999999999999999999999999999995 5
Q ss_pred EEEEec
Q 022742 283 LRVEWA 288 (293)
Q Consensus 283 L~V~~A 288 (293)
|+|.||
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 999886
No 102
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=133.08 Aligned_cols=82 Identities=20% Similarity=0.406 Sum_probs=75.7
Q ss_pred CCCceEEEecCCCCC------CHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCe-
Q 022742 209 NDENSVRVTNLSEDT------REPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNL- 281 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~------te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~- 281 (293)
...++|||+|||..+ ++++|+++|++||.|..|.++ +.+|.++|||||+|.+.++|++||..|||..++|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 679999999999999999988 46899999999999999999999999999999998
Q ss_pred EEEEEeccCCC
Q 022742 282 ILRVEWATPRT 292 (293)
Q Consensus 282 ~L~V~~Akpk~ 292 (293)
.|+|.||....
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999998653
No 103
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.4e-18 Score=132.33 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=76.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeE-EEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSR-VYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~-v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
..+.++|||+|||+++++++|+++|++||.|.. |.|+.+ .+|+++|||||+|.+.++|++||.. ||..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 356789999999999999999999999999987 888888 7899999999999999999999986 9999999999999
Q ss_pred eccCCC
Q 022742 287 WATPRT 292 (293)
Q Consensus 287 ~Akpk~ 292 (293)
++.++.
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 998753
No 104
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-18 Score=133.71 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=72.1
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCc--eeCCeEEE
Q 022742 208 RNDENSVRVTNLSE-DTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGY--GYDNLILR 284 (293)
Q Consensus 208 ~~~~~~v~V~nLp~-~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~--~i~g~~L~ 284 (293)
..+.++|||+|||+ ++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|+.||+.||+. .|+|++|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 45678999999999 9999999999999999999999865 479999999999999999999875 59999999
Q ss_pred EEeccCCC
Q 022742 285 VEWATPRT 292 (293)
Q Consensus 285 V~~Akpk~ 292 (293)
|.||+++.
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99999654
No 105
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-18 Score=127.33 Aligned_cols=77 Identities=29% Similarity=0.400 Sum_probs=74.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
++|||+|||.++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|++|++.++ ..++|+.|+|+||.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEecC
Confidence 479999999999999999999999999999999999999999999999999999999999999 99999999999973
No 106
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=130.36 Aligned_cols=77 Identities=35% Similarity=0.463 Sum_probs=72.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC-----eEE
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN-----LIL 283 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g-----~~L 283 (293)
...++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.|||..|+| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999875 899999999999999999999999999 999
Q ss_pred EEEeccCCC
Q 022742 284 RVEWATPRT 292 (293)
Q Consensus 284 ~V~~Akpk~ 292 (293)
+|.+|+|+.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999999875
No 107
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=1e-18 Score=142.61 Aligned_cols=85 Identities=35% Similarity=0.513 Sum_probs=80.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|+|.|
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
++++.
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99764
No 108
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.3e-18 Score=128.44 Aligned_cols=80 Identities=23% Similarity=0.390 Sum_probs=74.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC--CeEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD--NLILRV 285 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~--g~~L~V 285 (293)
..+.++|||+|||.++++++|+++|++||.|..|.+..+ +|||||+|.+.++|++|++.|||..++ |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456789999999999999999999999999999988743 789999999999999999999999999 999999
Q ss_pred EeccCCCC
Q 022742 286 EWATPRTN 293 (293)
Q Consensus 286 ~~Akpk~~ 293 (293)
+||+|++.
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99999863
No 109
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=7.9e-18 Score=134.07 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=76.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCC---eeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGA---VSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~---i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
..+.++|||+|||+++++++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|++||+ |||..|+|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 356789999999999999999999999999 89999999987 9999999999999999999999 999999999999
Q ss_pred EEeccCC
Q 022742 285 VEWATPR 291 (293)
Q Consensus 285 V~~Akpk 291 (293)
|.+|.++
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998753
No 110
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=8.3e-18 Score=130.61 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=72.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCce--eCCeEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYG--YDNLILRV 285 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~--i~g~~L~V 285 (293)
..++++|||+|||+++++++|+++|++||.|.++.+++ .||||||+|.+.++|.+|++.|||.. ++|++|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 35678999999999999999999999999999999874 37899999999999999999999875 78999999
Q ss_pred EeccCCC
Q 022742 286 EWATPRT 292 (293)
Q Consensus 286 ~~Akpk~ 292 (293)
+||+++.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9999874
No 111
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.6e-18 Score=128.85 Aligned_cols=79 Identities=27% Similarity=0.456 Sum_probs=73.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.+.++ +|||||+|.+.++|++|++.|||..++|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999754 78999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
++++.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 99875
No 112
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.4e-18 Score=131.79 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=71.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCc--eeCCeEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGY--GYDNLILRV 285 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~--~i~g~~L~V 285 (293)
..+.++|||+|||+++++++|+++|++||.|..|.++++ ||||||+|.+.++|++|++.|++. .++|+.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999998753 789999999999999999988765 589999999
Q ss_pred EeccCCC
Q 022742 286 EWATPRT 292 (293)
Q Consensus 286 ~~Akpk~ 292 (293)
+||+++.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9998764
No 113
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=6.5e-18 Score=128.83 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=73.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..+ ..++.++|||||+|.+.++|++|+..|||..++|+.|+|.|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999988766 34789999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 98875
No 114
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=4.8e-18 Score=137.57 Aligned_cols=81 Identities=19% Similarity=0.351 Sum_probs=74.1
Q ss_pred CCCceEEEecCCCCCCHHHHH----HhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 209 NDENSVRVTNLSEDTREPDLL----ELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~----~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|+.||..|||..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 456899999999999999876 7999999999988753 688999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 022742 285 VEWATPRT 292 (293)
Q Consensus 285 V~~Akpk~ 292 (293)
|.||+++.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99999864
No 115
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=4.7e-19 Score=136.58 Aligned_cols=83 Identities=24% Similarity=0.352 Sum_probs=77.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||+|||.++++++|+++|++||.|.. .++.++.+|.++|||||+|.+.++|++||+ |||..++|+.|+|.||
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45789999999999999999999999999987 667777889999999999999999999998 9999999999999999
Q ss_pred cCCCC
Q 022742 289 TPRTN 293 (293)
Q Consensus 289 kpk~~ 293 (293)
+++.+
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98753
No 116
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.2e-18 Score=131.20 Aligned_cols=77 Identities=23% Similarity=0.415 Sum_probs=72.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||+|||.++++++|+++|++||.|.++.+. .++|||||+|.+.++|++|+..|||..++|+.|+|.||
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 456899999999999999999999999999999987 35799999999999999999999999999999999999
Q ss_pred cCC
Q 022742 289 TPR 291 (293)
Q Consensus 289 kpk 291 (293)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 986
No 117
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=124.87 Aligned_cols=78 Identities=23% Similarity=0.378 Sum_probs=72.6
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 207 RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 207 ~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
...+.++|||+|||.++++++|+++|++||.|..+.+++ +||||+|.+.++|++|+..|||..++|+.|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 346679999999999999999999999999999999873 399999999999999999999999999999999
Q ss_pred eccCCC
Q 022742 287 WATPRT 292 (293)
Q Consensus 287 ~Akpk~ 292 (293)
|++++.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 999874
No 118
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=5.5e-18 Score=129.36 Aligned_cols=82 Identities=22% Similarity=0.464 Sum_probs=76.0
Q ss_pred CCCCceEEEecCCCCCCHHHHH----HhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLL----ELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLIL 283 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~----~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L 283 (293)
..+.++|||+|||.++++++|+ ++|++||.|..|.+.+ +|.++|||||+|.+.++|++|+..|||..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3567899999999999999999 9999999999998873 57889999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 022742 284 RVEWATPRT 292 (293)
Q Consensus 284 ~V~~Akpk~ 292 (293)
+|.||+++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999999875
No 119
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=125.35 Aligned_cols=77 Identities=23% Similarity=0.446 Sum_probs=72.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..+.++ +|||||+|.+.++|++|+..|||..++|+.|+|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3567999999999999999999999999999999987 57999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
++++.
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 99875
No 120
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=3.3e-19 Score=141.09 Aligned_cols=84 Identities=25% Similarity=0.443 Sum_probs=80.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeE--------EEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSR--------VYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN 280 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~--------v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g 280 (293)
.+.++|||+|||.++++++|+++|++||.|.. |.++.++.++.++|||||+|.+.++|++||..|||..++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46789999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred eEEEEEeccCCC
Q 022742 281 LILRVEWATPRT 292 (293)
Q Consensus 281 ~~L~V~~Akpk~ 292 (293)
+.|+|.||+++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999999875
No 121
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=133.30 Aligned_cols=79 Identities=15% Similarity=0.289 Sum_probs=72.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCC--ceeCCeEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNG--YGYDNLILRV 285 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng--~~i~g~~L~V 285 (293)
..+.++|||+|||+++++++|+++|++||.|.+|.|+++ ||||||+|.+.++|++|++.|++ ..|+|+.|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 456789999999999999999999999999999999865 79999999999999999999885 6899999999
Q ss_pred EeccCCC
Q 022742 286 EWATPRT 292 (293)
Q Consensus 286 ~~Akpk~ 292 (293)
.||+++.
T Consensus 102 ~~a~~k~ 108 (119)
T 2ad9_A 102 QFSNHKE 108 (119)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 9999874
No 122
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=122.86 Aligned_cols=76 Identities=24% Similarity=0.392 Sum_probs=71.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHh-CCceeCCeEEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKL-NGYGYDNLILRVE 286 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~L-ng~~i~g~~L~V~ 286 (293)
....++|||+|||.++++++|+++|++||.|..+.++++ +|||||+|.+.++|++|+..| ||..++|+.|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 356789999999999999999999999999999999863 789999999999999999988 9999999999999
Q ss_pred ecc
Q 022742 287 WAT 289 (293)
Q Consensus 287 ~Ak 289 (293)
||+
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 986
No 123
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=2e-17 Score=129.79 Aligned_cols=77 Identities=30% Similarity=0.531 Sum_probs=72.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|++|+..|||..++|+.|+|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
++++.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 99875
No 124
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.9e-18 Score=133.73 Aligned_cols=85 Identities=31% Similarity=0.426 Sum_probs=74.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|++||..|||..|+|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34678999999999999999999999999984433322323789999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+++.
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 99874
No 125
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=8.3e-18 Score=149.12 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=77.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCC--CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFG--AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G--~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..++|||+|||+++++++|+++|++|| .|.+|.|++++.||+++|||||+|.+.++|++||+.|||..|+|+.|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 022742 288 ATP 290 (293)
Q Consensus 288 Akp 290 (293)
|++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 875
No 126
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=129.60 Aligned_cols=79 Identities=22% Similarity=0.460 Sum_probs=74.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++||..|||..++|+.|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 356789999999999999999999999999999999875 78999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
++++.
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 99875
No 127
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=126.68 Aligned_cols=81 Identities=27% Similarity=0.354 Sum_probs=73.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||+|||+++++++|+++|++||.|. +.++. +.++|||||+|.+.++|++||+.|||..|+|+.|+|.|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 66664 36789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 022742 288 ATPRTN 293 (293)
Q Consensus 288 Akpk~~ 293 (293)
|+++..
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 998753
No 128
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.72 E-value=8.9e-18 Score=129.61 Aligned_cols=81 Identities=27% Similarity=0.492 Sum_probs=76.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||+|||.++++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|++||. +|..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 346899999999999999999999999999999999998 99999999999999999999998 999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
.++.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 8664
No 129
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=2.1e-17 Score=125.03 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=70.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
.+..|||+||++.++|++|+++|.+||+|..+++.. ++|||||+|.+.++|++|++.|||..++|+.|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999864 68999999999999999999999999999999999985
No 130
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=1.7e-17 Score=130.70 Aligned_cols=80 Identities=20% Similarity=0.390 Sum_probs=74.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||+|||.++++++|+++|++||.|..|.++.+ +.++|||||+|.+.++|++|+..|||..++|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45689999999999999999999999999999999876 556999999999999999999999999999999999999
Q ss_pred cCC
Q 022742 289 TPR 291 (293)
Q Consensus 289 kpk 291 (293)
+|+
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 864
No 131
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=4.8e-17 Score=141.73 Aligned_cols=83 Identities=30% Similarity=0.418 Sum_probs=78.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||.++++++|+++|++||.|.+|.|++++.||+++|||||+|.+.++|++||+.|||..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 022742 289 TPR 291 (293)
Q Consensus 289 kpk 291 (293)
.+.
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 132
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.8e-17 Score=123.43 Aligned_cols=77 Identities=35% Similarity=0.439 Sum_probs=71.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCC--CCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPF--GAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRV 285 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~--G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V 285 (293)
....++|||+|||+++++++|+++|++| |.|.++.+. +|||||+|.+.++|++||..|||..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3567899999999999999999999999 899988764 679999999999999999999999999999999
Q ss_pred EeccCCC
Q 022742 286 EWATPRT 292 (293)
Q Consensus 286 ~~Akpk~ 292 (293)
.||+++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9999875
No 133
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.71 E-value=3.5e-17 Score=147.85 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=108.3
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCC-CCCCcccCCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPP-GMRAGAERTGT 203 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp-~~r~~~~~~~~ 203 (293)
.++.|..+|+.+|.+..|++..++.......+.|..+... +.+..+.....+..+.. .++-.......
T Consensus 108 t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~-----------~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 108 TQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKK-----------DSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH-----------HHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred CHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCH-----------HHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 3467889999999999999875322222333445444432 11111111112221110 00000000011
Q ss_pred ccccCCCCceEEEecCCCCC-CHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 022742 204 DMRRRNDENSVRVTNLSEDT-REPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLI 282 (293)
Q Consensus 204 ~~~~~~~~~~v~V~nLp~~~-te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~ 282 (293)
........++|||+|||..+ ++++|+++|+.||.|..+.|+.++ +|.++|||||.|.+.++|.+|+..|||..++|+.
T Consensus 177 ~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 255 (284)
T 3smz_A 177 LTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSH 255 (284)
T ss_dssp CCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE
Confidence 11223567899999999995 999999999999999999999986 7999999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 022742 283 LRVEWATPRT 292 (293)
Q Consensus 283 L~V~~Akpk~ 292 (293)
|+|.|+.|+.
T Consensus 256 l~v~~a~~~~ 265 (284)
T 3smz_A 256 LRVSFCAPGP 265 (284)
T ss_dssp CEEEECCSSS
T ss_pred EEEEEecCCC
Confidence 9999999875
No 134
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=5.9e-17 Score=124.52 Aligned_cols=77 Identities=21% Similarity=0.380 Sum_probs=72.3
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 208 RNDENSVRVTNLSE-DTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 208 ~~~~~~v~V~nLp~-~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
..+.++|||+|||. ++++++|+++|++||.|..+.+. +|||||+|.+.++|++|+..|||..++|+.|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45679999999998 99999999999999999999883 7899999999999999999999999999999999
Q ss_pred eccCCC
Q 022742 287 WATPRT 292 (293)
Q Consensus 287 ~Akpk~ 292 (293)
|++++.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 999875
No 135
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=7e-17 Score=133.31 Aligned_cols=82 Identities=30% Similarity=0.601 Sum_probs=79.0
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATP 290 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akp 290 (293)
.++|||+|||.++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|.|+.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999998999999999999999999999999999999999999999987
Q ss_pred CC
Q 022742 291 RT 292 (293)
Q Consensus 291 k~ 292 (293)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 136
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=130.47 Aligned_cols=80 Identities=28% Similarity=0.324 Sum_probs=74.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||+++++++|+++|++| .|..|.|+.++. |+++|||||+|.+.++|++|| .|||..|+|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345799999999999999999999999 899999999976 999999999999999999999 69999999999999988
Q ss_pred cCC
Q 022742 289 TPR 291 (293)
Q Consensus 289 kpk 291 (293)
.++
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 753
No 137
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.71 E-value=4.5e-17 Score=126.08 Aligned_cols=76 Identities=24% Similarity=0.447 Sum_probs=71.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||.++++++|+++|++||.|..|.++ +|||||+|.+.++|++||+.|||..|+|+.|+|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 467899999999999999999999999999999886 459999999999999999999999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
+++.
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 9864
No 138
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=5.9e-18 Score=125.43 Aligned_cols=73 Identities=21% Similarity=0.487 Sum_probs=68.1
Q ss_pred CceEEEecCCCCC------CHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCe-EE
Q 022742 211 ENSVRVTNLSEDT------REPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNL-IL 283 (293)
Q Consensus 211 ~~~v~V~nLp~~~------te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~-~L 283 (293)
+++|||+|||..+ ++++|+++|++||.|..+.++ +.+|.++|||||+|.+.++|++||..|||..++|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 679999999999999999987 46899999999999999999999999999999999 88
Q ss_pred EE
Q 022742 284 RV 285 (293)
Q Consensus 284 ~V 285 (293)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 139
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=4.6e-17 Score=134.91 Aligned_cols=83 Identities=36% Similarity=0.594 Sum_probs=79.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
+.++|||+|||.++++++|+++|++||.|..+.+++++.+|.++|||||.|.+.++|++|++.|||..++|+.|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 022742 290 PRT 292 (293)
Q Consensus 290 pk~ 292 (293)
|..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 764
No 140
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=4.4e-18 Score=133.02 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=77.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCC---eeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGA---VSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~---i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
..+.++|||+|||+++++++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|++||. |||..++|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 356789999999999999999999999998 89999999987 9999999999999999999999 999999999999
Q ss_pred EEeccCC
Q 022742 285 VEWATPR 291 (293)
Q Consensus 285 V~~Akpk 291 (293)
|.+|.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9999864
No 141
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-17 Score=131.25 Aligned_cols=76 Identities=24% Similarity=0.397 Sum_probs=70.9
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
+.++|||+|||.++++++|+++|++||.|.+|.|+. ++|||||+|.+.++|+.||+.|||..|+|+.|+|+||+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999998863 57899999999999999999999999999999999997
Q ss_pred CC
Q 022742 290 PR 291 (293)
Q Consensus 290 pk 291 (293)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 142
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=124.89 Aligned_cols=80 Identities=24% Similarity=0.421 Sum_probs=73.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEE-EEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRV-YVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v-~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
...++|||+|||+++++++|+++|++||.|..+ .++.++.++. |||+|.+.++|++||..|||..|+|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999999999999999 5888766543 99999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|.|+.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 99874
No 143
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=1.2e-16 Score=125.15 Aligned_cols=75 Identities=24% Similarity=0.399 Sum_probs=70.5
Q ss_pred CCCceEEEecCCCC-CCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 209 NDENSVRVTNLSED-TREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 209 ~~~~~v~V~nLp~~-~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
...++|||+|||.+ +++++|+++|++||.|..|.+ ++|||||+|.+.++|++||+.|||..|+|+.|+|+|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45689999999999 999999999999999999988 578999999999999999999999999999999999
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
+++.
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9854
No 144
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.70 E-value=2.3e-17 Score=149.62 Aligned_cols=84 Identities=26% Similarity=0.397 Sum_probs=78.0
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHhhcCCCCeeEEEEEecCC-CCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 022742 208 RNDENSVRVTNLSED-TREPDLLELFRPFGAVSRVYVAVDQK-TGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRV 285 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~-~te~dL~~lF~~~G~i~~v~l~~d~~-tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V 285 (293)
....++|||+|||.. +++++|+++|++||.|..|.++.+.. ||.++|||||.|.+.++|.+|+ .|||..|+|+.|+|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 356789999999999 99999999999999999999999876 6999999999999999999999 99999999999999
Q ss_pred EeccCCC
Q 022742 286 EWATPRT 292 (293)
Q Consensus 286 ~~Akpk~ 292 (293)
.||+|++
T Consensus 286 ~~a~~k~ 292 (292)
T 2ghp_A 286 SLADKKP 292 (292)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9999985
No 145
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=121.76 Aligned_cols=77 Identities=26% Similarity=0.393 Sum_probs=71.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|| ++++++|+++|++||.|..|.+. .++|||||+|.+.++|++||..|||..++|+.|+|.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 356789999996 89999999999999999999884 4688999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 99875
No 146
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=4.6e-18 Score=123.72 Aligned_cols=75 Identities=28% Similarity=0.397 Sum_probs=72.1
Q ss_pred eEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 213 SVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 213 ~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
+|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ +++..++|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999998 5999999999999986
No 147
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.2e-17 Score=125.41 Aligned_cols=78 Identities=21% Similarity=0.359 Sum_probs=71.0
Q ss_pred cCCCCceEEEecCCC-CCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 022742 207 RRNDENSVRVTNLSE-DTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRV 285 (293)
Q Consensus 207 ~~~~~~~v~V~nLp~-~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V 285 (293)
...+.++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+|.+.++|+.||..|||..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 346789999999998 99999999999999999999883 689999999999999999999999999999999
Q ss_pred EeccCCC
Q 022742 286 EWATPRT 292 (293)
Q Consensus 286 ~~Akpk~ 292 (293)
+|++++.
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9998764
No 148
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=2.8e-17 Score=130.00 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=72.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCC-CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFG-AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G-~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
...++|||+|||+++++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|++||+.|||..|+|+.|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4568999999999999999999999999 899988853 35899999999999999999999999999999999999
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
++..
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 9865
No 149
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.3e-17 Score=121.74 Aligned_cols=77 Identities=27% Similarity=0.346 Sum_probs=71.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..+.+++ +||||+|.+.++|++||..|||..++|+.|+|.|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999873 4999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
++++.
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 99764
No 150
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.1e-17 Score=124.47 Aligned_cols=77 Identities=25% Similarity=0.413 Sum_probs=70.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCC-eeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCC-ceeCCeEEEEE
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGA-VSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNG-YGYDNLILRVE 286 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~-i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng-~~i~g~~L~V~ 286 (293)
.+.++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|++||+.||| ..++|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 46789999999999999999999999999 6655552 478999999999999999999999 99999999999
Q ss_pred eccCCC
Q 022742 287 WATPRT 292 (293)
Q Consensus 287 ~Akpk~ 292 (293)
||+++.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 999875
No 151
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.69 E-value=9.2e-17 Score=155.08 Aligned_cols=84 Identities=23% Similarity=0.425 Sum_probs=80.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||..+++++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|.||
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
+++.
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8753
No 152
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=127.90 Aligned_cols=76 Identities=30% Similarity=0.441 Sum_probs=72.2
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 291 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akpk 291 (293)
++|||+|||.++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++.|||..++|+.|+|.|++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 7899999999999999999999999999999999999876
Q ss_pred C
Q 022742 292 T 292 (293)
Q Consensus 292 ~ 292 (293)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 153
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=136.14 Aligned_cols=84 Identities=24% Similarity=0.316 Sum_probs=72.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEE-----EecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYV-----AVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLIL 283 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l-----~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L 283 (293)
.+.++|||+|||+++++++|+.+|++||.|..+.+ ++...+|.++|||||+|.+.++|.+||..|||..|+|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 45689999999999999999999999999876310 1112468999999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 022742 284 RVEWATPRT 292 (293)
Q Consensus 284 ~V~~Akpk~ 292 (293)
+|.||+++.
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999998753
No 154
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.69 E-value=5e-17 Score=134.17 Aligned_cols=80 Identities=29% Similarity=0.437 Sum_probs=75.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||+|||+++++++|+++|++||.|.+|.++++ ++|||||+|.+.++|+.||..|||..++|+.|+|+|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999876 689999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+|++
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 99875
No 155
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6.7e-17 Score=128.05 Aligned_cols=79 Identities=14% Similarity=0.307 Sum_probs=71.4
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCC--ceeCCeEEE
Q 022742 208 RNDENSVRVTNLSED-TREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNG--YGYDNLILR 284 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~-~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng--~~i~g~~L~ 284 (293)
..+.++|||+|||++ +++++|+++|++||.|.+|.|++ ++|||||+|.+.++|+.||+.||+ ..|+|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 356789999999998 99999999999999999999974 378999999999999999998865 569999999
Q ss_pred EEeccCCC
Q 022742 285 VEWATPRT 292 (293)
Q Consensus 285 V~~Akpk~ 292 (293)
|.||+++.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99999764
No 156
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.68 E-value=1.8e-16 Score=143.11 Aligned_cols=141 Identities=25% Similarity=0.389 Sum_probs=105.6
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCCCCCCcccCCCCcc
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPPGMRAGAERTGTDM 205 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp~~r~~~~~~~~~~ 205 (293)
++.|..+|+.+| ++.|++.. ...+.|..+... +.+..+.....+..+... .- ..
T Consensus 36 e~~l~~~F~~~G-i~~~~~~~------~~g~afV~f~~~-----------~~A~~A~~~l~~~~~~g~-~i-------~v 89 (284)
T 3smz_A 36 NQEVHDLLSDYE-LKYCFVDK------YKGTAFVTLLNG-----------EQAEAAINAFHQSRLRER-EL-------SV 89 (284)
T ss_dssp HHHHHHHTTTSC-EEEEEEET------TTTEEEEEESSH-----------HHHHHHHHHHTTCEETTE-EC-------EE
T ss_pred HHHHHHHHHHcC-CEEEEEec------CCCEEEEEeCCH-----------HHHHHHHHHcCCCeeCCe-EE-------EE
Confidence 457899999999 99999833 122445555432 111111212222222110 00 00
Q ss_pred ccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 022742 206 RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRV 285 (293)
Q Consensus 206 ~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V 285 (293)
......++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||.|.+.++|.+|+..|||..++|+.|.|
T Consensus 90 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 169 (284)
T 3smz_A 90 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYV 169 (284)
T ss_dssp EECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred EecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 11245689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 022742 286 EWATPRT 292 (293)
Q Consensus 286 ~~Akpk~ 292 (293)
.|+.++.
T Consensus 170 ~~a~~~~ 176 (284)
T 3smz_A 170 HWTDAGQ 176 (284)
T ss_dssp EECCGGG
T ss_pred EECCCCC
Confidence 9998753
No 157
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=120.86 Aligned_cols=78 Identities=22% Similarity=0.332 Sum_probs=71.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||+|||.++++++|+++|++||.|.+| +.++.+|. ||||+|.+.++|++||. |||..|+|+.|+|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456899999999999999999999999999987 66767766 99999999999999999 9999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
.++.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 8764
No 158
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=2e-16 Score=134.42 Aligned_cols=83 Identities=27% Similarity=0.400 Sum_probs=78.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||.|.+.++|++||.. +|..++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 45678999999999999999999999999999999999999999999999999999999999974 99999999999999
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
+.++
T Consensus 89 ~~~~ 92 (196)
T 1l3k_A 89 AVSR 92 (196)
T ss_dssp CCC-
T ss_pred ccCc
Confidence 9765
No 159
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=9e-17 Score=137.04 Aligned_cols=83 Identities=25% Similarity=0.412 Sum_probs=78.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||+|||..+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|++||+.|||..|+|+.|+|+|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3557899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
|.+.
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9864
No 160
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=2e-17 Score=138.56 Aligned_cols=79 Identities=20% Similarity=0.364 Sum_probs=73.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||+|||..+++++|+++|++||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..++|+.|+|.||
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 457899999999999999999999999988765 568999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
+|++
T Consensus 172 ~~k~ 175 (175)
T 1fje_B 172 GEKG 175 (175)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9985
No 161
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=2.3e-16 Score=118.74 Aligned_cols=75 Identities=24% Similarity=0.424 Sum_probs=70.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
..++|||+|||+++++++|+++|++| .|..+.+. .++|||||+|.+.++|++|++.|||..++|+.|+|+||.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999884 578999999999999999999999999999999999997
Q ss_pred CC
Q 022742 290 PR 291 (293)
Q Consensus 290 pk 291 (293)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 162
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.3e-17 Score=130.26 Aligned_cols=82 Identities=18% Similarity=0.237 Sum_probs=74.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCe----eEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAV----SRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLIL 283 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i----~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L 283 (293)
..+.++|||+|||+++++++|+++|++||.| ..|.|+.+ .+|+++|||||+|.+.++|++||+. |+..|+|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999975 68999998 4899999999999999999999985 9999999999
Q ss_pred EEEeccCC
Q 022742 284 RVEWATPR 291 (293)
Q Consensus 284 ~V~~Akpk 291 (293)
.|..+.++
T Consensus 98 ~V~~a~~~ 105 (123)
T 2dha_A 98 ELFRSTAA 105 (123)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99988653
No 163
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=2.8e-16 Score=118.99 Aligned_cols=77 Identities=27% Similarity=0.470 Sum_probs=63.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCce--eCCeEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYG--YDNLILRV 285 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~--i~g~~L~V 285 (293)
....++|||+|||+++++++|+++|++||.|.+|.|+++ +||||||+|.+.++|++ |+|.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 356789999999999999999999999999999999864 79999999999999983 56664 45999999
Q ss_pred EeccCCCC
Q 022742 286 EWATPRTN 293 (293)
Q Consensus 286 ~~Akpk~~ 293 (293)
.+|.|+.+
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99998853
No 164
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=7.8e-17 Score=130.28 Aligned_cols=81 Identities=19% Similarity=0.317 Sum_probs=73.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCee--EEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVS--RVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRV 285 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~--~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V 285 (293)
..+.++|||+|||+++++++|+++|++| .|. .|.|+.++. |+++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 3456899999999999999999999999 566 899999987 9999999999999999999998 5889999999999
Q ss_pred EeccCC
Q 022742 286 EWATPR 291 (293)
Q Consensus 286 ~~Akpk 291 (293)
.++.++
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988753
No 165
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.66 E-value=6.9e-16 Score=125.25 Aligned_cols=78 Identities=22% Similarity=0.313 Sum_probs=71.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeE-EEEEEcCHHHHHHHHHHhCCceeCC--eEEEE
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGF-GFVNFVNKEDAQRAINKLNGYGYDN--LILRV 285 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGf-AFV~F~~~e~A~~Ai~~Lng~~i~g--~~L~V 285 (293)
..--.|||+||++.+++++|+++|++||.|.+|.+..+ .+|| |||+|.+.++|+.|++.|||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34467889999999999999999999999999988764 2688 9999999999999999999999988 99999
Q ss_pred EeccCC
Q 022742 286 EWATPR 291 (293)
Q Consensus 286 ~~Akpk 291 (293)
+||+++
T Consensus 101 ~~ak~~ 106 (130)
T 3zzy_A 101 DFSKLT 106 (130)
T ss_dssp EECSCS
T ss_pred EecCCC
Confidence 999986
No 166
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.4e-16 Score=127.15 Aligned_cols=78 Identities=13% Similarity=0.211 Sum_probs=71.3
Q ss_pred ceEEEecC----CCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcC----HHH----HHHHHH--HhCCce
Q 022742 212 NSVRVTNL----SEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVN----KED----AQRAIN--KLNGYG 277 (293)
Q Consensus 212 ~~v~V~nL----p~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~----~e~----A~~Ai~--~Lng~~ 277 (293)
..|||+|| |+.+++.+|+++|++||+|.++.++.|+.||.++|||||.|.+ .++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 888988 789999
Q ss_pred eCCeEEEEEecc
Q 022742 278 YDNLILRVEWAT 289 (293)
Q Consensus 278 i~g~~L~V~~Ak 289 (293)
|+|+.|+|.+-+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999754
No 167
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.65 E-value=2.4e-16 Score=142.84 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=102.1
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCCCCCCcccCCCCc
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPPGMRAGAERTGTD 204 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp~~r~~~~~~~~~ 204 (293)
.++.|..+|+.+|.+..|+++.+... ...+.|..+... +.+..+. ...+..+....-.
T Consensus 54 t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~-----------~~A~~A~-~~~~~~~~g~~i~-------- 111 (292)
T 2ghp_A 54 NQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARY-----------DGALAAI-TKTHKVVGQNEII-------- 111 (292)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSH-----------HHHHHHH-TTTTCEETTEECE--------
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCH-----------HHHHHHH-HhCCcEeCCcEEE--------
Confidence 34678999999999999999874211 234445554431 2222222 2333332111000
Q ss_pred cccCCCCceEEEecCCCCCCHHHHHHhhcCCC-CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 022742 205 MRRRNDENSVRVTNLSEDTREPDLLELFRPFG-AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLIL 283 (293)
Q Consensus 205 ~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G-~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L 283 (293)
-.....++|||+|||..+++++|+++|++|| .|..|.++.++. |.++|||||.|.+.++|.+|+..|||..++|+.|
T Consensus 112 -v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 189 (292)
T 2ghp_A 112 -VSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTL 189 (292)
T ss_dssp -EEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred -EEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 0123578999999999999999999999999 999999998875 8899999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 022742 284 RVEWATPRT 292 (293)
Q Consensus 284 ~V~~Akpk~ 292 (293)
.|.|+.|+.
T Consensus 190 ~v~~a~~~~ 198 (292)
T 2ghp_A 190 VTKVSNPLE 198 (292)
T ss_dssp EEEECCCC-
T ss_pred EEEECCCCc
Confidence 999998764
No 168
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=3.5e-16 Score=131.71 Aligned_cols=80 Identities=20% Similarity=0.247 Sum_probs=72.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC--eEEEEE
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN--LILRVE 286 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g--~~L~V~ 286 (293)
....+|||+||++.+++++|+++|++||.|.+|.+..+ .++|||||+|.+.++|+.|++.|||..|.| +.|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34568999999999999999999999999999998653 258999999999999999999999999965 999999
Q ss_pred eccCCC
Q 022742 287 WATPRT 292 (293)
Q Consensus 287 ~Akpk~ 292 (293)
||+++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 999863
No 169
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=4e-17 Score=134.12 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=75.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||+|||+++++++|+++|++|| |..|.|+.++. |+++|||||+|.+.++|++|| .+|+..|+|+.|+|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999 66999999976 999999999999999999999 7999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
+.++.
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 98763
No 170
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=6.3e-16 Score=127.39 Aligned_cols=80 Identities=25% Similarity=0.459 Sum_probs=75.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 291 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Akpk 291 (293)
++|||+|||.++++++|+++|++||.|.++.+++++. +.++|||||+|.+.++|++|+..|||..+.|+.|+|.|+.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999864 789999999999999999999999999999999999999865
Q ss_pred C
Q 022742 292 T 292 (293)
Q Consensus 292 ~ 292 (293)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 171
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.63 E-value=1.7e-15 Score=118.50 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=73.5
Q ss_pred CCCceEEEecCCC-----CCCHHHHHHhhcCCCCeeEEEEEecCCC-CCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 022742 209 NDENSVRVTNLSE-----DTREPDLLELFRPFGAVSRVYVAVDQKT-GISRGFGFVNFVNKEDAQRAINKLNGYGYDNLI 282 (293)
Q Consensus 209 ~~~~~v~V~nLp~-----~~te~dL~~lF~~~G~i~~v~l~~d~~t-g~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~ 282 (293)
.++++|+|.||.. +-.+++|+++|++||.|.+|.|++++.+ +.++|||||.|.+.++|.+|++.|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 2368899999999999999999998764 689999999999999999999999999999999
Q ss_pred EEEEeccC
Q 022742 283 LRVEWATP 290 (293)
Q Consensus 283 L~V~~Akp 290 (293)
|+|.|+.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999875
No 172
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.5e-16 Score=118.05 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=65.7
Q ss_pred CceEEEecCCCCCCHHH----HHHhhcCC-CCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 022742 211 ENSVRVTNLSEDTREPD----LLELFRPF-GAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRV 285 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~d----L~~lF~~~-G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V 285 (293)
.+.|||+|||+.+++++ |+++|++| |.|..| |+ |||||.|.+.++|++|++.|||..+.|++|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34499999999999987 56899999 599887 44 99999999999999999999999999999999
Q ss_pred EeccCCCC
Q 022742 286 EWATPRTN 293 (293)
Q Consensus 286 ~~Akpk~~ 293 (293)
.||+.+.+
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99998753
No 173
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.8e-16 Score=122.69 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=66.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCC---CCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKT---GISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRV 285 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~t---g~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V 285 (293)
...++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888888877 7999999999999999999999983 355555555
Q ss_pred Eecc
Q 022742 286 EWAT 289 (293)
Q Consensus 286 ~~Ak 289 (293)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 4433
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=2e-15 Score=136.04 Aligned_cols=77 Identities=27% Similarity=0.396 Sum_probs=71.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEEe
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD-NLILRVEW 287 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~-g~~L~V~~ 287 (293)
...++|||+|||..+++++|+++|++||.|.+|.++.++ +|||||.|.+.++|.+||..|||..++ |+.|+|+|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 456899999999999999999999999999999998653 589999999999999999999999999 99999999
Q ss_pred ccC
Q 022742 288 ATP 290 (293)
Q Consensus 288 Akp 290 (293)
|+.
T Consensus 280 akk 282 (282)
T 3pgw_A 280 AKK 282 (282)
T ss_pred ecC
Confidence 973
No 175
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=1.2e-15 Score=126.87 Aligned_cols=82 Identities=28% Similarity=0.348 Sum_probs=76.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCC--CeeeEEEEEEcCHHHHHHHHHHhCCceeC---CeEEE
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTG--ISRGFGFVNFVNKEDAQRAINKLNGYGYD---NLILR 284 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg--~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~---g~~L~ 284 (293)
+.++|||+|||.++++++|+++|++||.|..+.+++++.++ .++|||||.|.+.++|++|++.|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999999887 89999999999999999999999998776 68888
Q ss_pred EEeccCC
Q 022742 285 VEWATPR 291 (293)
Q Consensus 285 V~~Akpk 291 (293)
+.++.+.
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8888754
No 176
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=3.8e-15 Score=119.98 Aligned_cols=75 Identities=25% Similarity=0.316 Sum_probs=68.1
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeE-EEEEEcCHHHHHHHHHHhCCceeCC--eEEEEEec
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGF-GFVNFVNKEDAQRAINKLNGYGYDN--LILRVEWA 288 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGf-AFV~F~~~e~A~~Ai~~Lng~~i~g--~~L~V~~A 288 (293)
..|||+||++.+++++|+++|++||.|.+|.|... .|| |||+|.+.++|..|++.|||..|.| +.|+|.||
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999998652 286 9999999999999999999999987 69999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 9874
No 177
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=7.9e-16 Score=123.21 Aligned_cols=77 Identities=26% Similarity=0.393 Sum_probs=70.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
....++|||+|| ++++++|+++|++||.|..|.+. .++|||||+|.+.++|++||..|||..++|+.|+|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999996 69999999999999999999885 4689999999999999999999999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
|+++.
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 99874
No 178
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=7.3e-16 Score=137.42 Aligned_cols=80 Identities=21% Similarity=0.371 Sum_probs=71.2
Q ss_pred CCCCceEEEecCCCCC---------CHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCcee
Q 022742 208 RNDENSVRVTNLSEDT---------REPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGY 278 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~---------te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i 278 (293)
....++|||+||+..+ ++++|+.+|++||.|.+|.|+. ++|||||+|.+.++|+.|++.|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 6999999999999999999985 479999999999999999999999999
Q ss_pred ------------CCeEEEEEeccCCCC
Q 022742 279 ------------DNLILRVEWATPRTN 293 (293)
Q Consensus 279 ------------~g~~L~V~~Akpk~~ 293 (293)
.|+.|.|.||++.++
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999997653
No 179
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.2e-16 Score=123.26 Aligned_cols=77 Identities=19% Similarity=0.357 Sum_probs=69.6
Q ss_pred CCCceEEE--ecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCcee-----CCe
Q 022742 209 NDENSVRV--TNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGY-----DNL 281 (293)
Q Consensus 209 ~~~~~v~V--~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i-----~g~ 281 (293)
.+.++||| +||++++++++|+++|++||.|.+|.++. .||||||+|.+.++|++|++.|||..+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45688999 77999999999999999999999988753 278999999999999999999999988 689
Q ss_pred EEEEEeccCC
Q 022742 282 ILRVEWATPR 291 (293)
Q Consensus 282 ~L~V~~Akpk 291 (293)
+|.|.|++..
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999998754
No 180
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=5.5e-16 Score=122.71 Aligned_cols=75 Identities=36% Similarity=0.456 Sum_probs=67.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeE-----EE
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLI-----LR 284 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~-----L~ 284 (293)
..++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.|||..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999999765 89999999999999999999999999988 88
Q ss_pred EEeccCC
Q 022742 285 VEWATPR 291 (293)
Q Consensus 285 V~~Akpk 291 (293)
|..+.|+
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 8887765
No 181
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.61 E-value=1.1e-15 Score=131.90 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=76.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
.+.++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||.|.+.++|++||+.|||..++|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999988
Q ss_pred cCC
Q 022742 289 TPR 291 (293)
Q Consensus 289 kpk 291 (293)
.+.
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 754
No 182
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=1.1e-15 Score=137.09 Aligned_cols=141 Identities=23% Similarity=0.213 Sum_probs=102.8
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCCCCCCcccCCCCc
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPPGMRAGAERTGTD 204 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp~~r~~~~~~~~~ 204 (293)
.++.|..+|+.+|.+..|++... ..|.|..+... +.+..+.....+..+... . -.
T Consensus 35 te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~-----------~~A~~A~~~l~g~~i~g~-~-------l~ 89 (261)
T 3sde_A 35 TEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESR-----------TLAEIAKAELDGTILKSR-P-------LR 89 (261)
T ss_dssp CHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSH-----------HHHHHHHHHHTTCEETTE-E-------CE
T ss_pred CHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCH-----------HHHHHHHHHcCCcEECCc-e-------eE
Confidence 34678899999999999998752 23445555432 111111222233332110 0 00
Q ss_pred cccCCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhC-CceeC---C
Q 022742 205 MRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLN-GYGYD---N 280 (293)
Q Consensus 205 ~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Ln-g~~i~---g 280 (293)
.....+.++|||+|||..+++++|+++|++||.|..|.++.+ .+|.++|||||.|.+.++|.+||..|| |..+. +
T Consensus 90 v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 168 (261)
T 3sde_A 90 IRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 168 (261)
T ss_dssp EEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC
T ss_pred eeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC
Confidence 111234689999999999999999999999999999999999 589999999999999999999999995 54554 8
Q ss_pred eEEEEEeccCC
Q 022742 281 LILRVEWATPR 291 (293)
Q Consensus 281 ~~L~V~~Akpk 291 (293)
++|.|.++.+.
T Consensus 169 r~i~v~~~~~~ 179 (261)
T 3sde_A 169 RPVIVEPMEQF 179 (261)
T ss_dssp CBCEEEECCCE
T ss_pred ceEEEeecccc
Confidence 99999999864
No 183
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=129.80 Aligned_cols=78 Identities=22% Similarity=0.317 Sum_probs=72.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCC-CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEE
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFG-AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD-NLILRVE 286 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G-~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~-g~~L~V~ 286 (293)
.+.++|||+|||..+++++|+++|++|| .|..+.++.+ .+|||||.|.+.++|.+|+..|||..++ |+.|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999998754 2789999999999999999999999999 9999999
Q ss_pred eccCC
Q 022742 287 WATPR 291 (293)
Q Consensus 287 ~Akpk 291 (293)
|++|+
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99985
No 184
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=1.9e-15 Score=131.59 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=71.4
Q ss_pred CCceEEEecCC-CCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 210 DENSVRVTNLS-EDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 210 ~~~~v~V~nLp-~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
+.++|||+||| +.+++++|+++|++||.|.+|.++++ .+|||||+|.+.++|+.||+.|||..+.|+.|+|.||
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56899999999 89999999999999999999999865 3799999999999999999999999999999999999
Q ss_pred cC
Q 022742 289 TP 290 (293)
Q Consensus 289 kp 290 (293)
+.
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 74
No 185
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.2e-16 Score=116.54 Aligned_cols=77 Identities=25% Similarity=0.409 Sum_probs=66.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
...++|||+|||+++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|+. ....+.|+.|+|.|+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35689999999999999999999999999999999754 78999999999999975432 134558999999999
Q ss_pred cCCC
Q 022742 289 TPRT 292 (293)
Q Consensus 289 kpk~ 292 (293)
+|+.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9875
No 186
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=2e-15 Score=131.48 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=69.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCe--eEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCe----E
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAV--SRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNL----I 282 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i--~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~----~ 282 (293)
.+.++|||+|||+.+++++|+++|++||.| .++.+..++ +.++|||||+|.+.++|.+||..|||+.|+|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 456799999999999999999999999999 899988764 56679999999999999999999999999875 5
Q ss_pred EEEEec
Q 022742 283 LRVEWA 288 (293)
Q Consensus 283 L~V~~A 288 (293)
+.|.||
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777665
No 187
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=1.4e-15 Score=125.96 Aligned_cols=80 Identities=29% Similarity=0.481 Sum_probs=75.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
+.++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||.|.+.++|++|+. ++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999998 4679999999999987
Q ss_pred CC
Q 022742 290 PR 291 (293)
Q Consensus 290 pk 291 (293)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 64
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=3e-15 Score=131.74 Aligned_cols=78 Identities=22% Similarity=0.317 Sum_probs=72.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCC-CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEE
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFG-AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD-NLILRVE 286 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G-~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~-g~~L~V~ 286 (293)
.+.++|||+|||..+++++|+++|++|| .|..+.++.+ .+|||||+|.+.++|.+|+..|||..++ |+.|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999998653 3789999999999999999999999999 9999999
Q ss_pred eccCC
Q 022742 287 WATPR 291 (293)
Q Consensus 287 ~Akpk 291 (293)
||+|+
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99985
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.2e-15 Score=115.63 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=70.8
Q ss_pred CCCCceEEEecCCCCCC-----------HHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCc
Q 022742 208 RNDENSVRVTNLSEDTR-----------EPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGY 276 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~t-----------e~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~ 276 (293)
....++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|++|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 45678999999954432 5799999999999999966 554 37999999999999999999999999
Q ss_pred eeCCeEEEEEeccCCC
Q 022742 277 GYDNLILRVEWATPRT 292 (293)
Q Consensus 277 ~i~g~~L~V~~Akpk~ 292 (293)
.|+|+.|+|.|+.|+.
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999999865
No 190
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=2.2e-15 Score=112.34 Aligned_cols=72 Identities=19% Similarity=0.431 Sum_probs=66.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCC----C-------CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCce
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPF----G-------AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYG 277 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~----G-------~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~ 277 (293)
.+.++|||+|||.++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|++|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356899999999999999999999999 8 8999988754 799999999999999999 999999
Q ss_pred eCCeEEEEEe
Q 022742 278 YDNLILRVEW 287 (293)
Q Consensus 278 i~g~~L~V~~ 287 (293)
++|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.59 E-value=6.2e-15 Score=132.89 Aligned_cols=82 Identities=22% Similarity=0.466 Sum_probs=75.9
Q ss_pred CCCCceEEEecCCCCCCHHHHH----HhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLL----ELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLIL 283 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~----~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L 283 (293)
..+.++|||+|||.++++++|+ ++|++||.|..|.+.+ +|.++|||||+|.+.++|++||+.|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3567999999999999999966 8999999999999875 68899999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 022742 284 RVEWATPRT 292 (293)
Q Consensus 284 ~V~~Akpk~ 292 (293)
+|.|++++.
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999998754
No 192
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=9.3e-15 Score=126.12 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=72.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
..++|||+|||+++++++|+++|++||.|..|+++++. +|.++|||||+|.+.++|++||..+ +..++|+.|.|.|++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35899999999999999999999999999999999986 5999999999999999999999755 569999999999986
Q ss_pred C
Q 022742 290 P 290 (293)
Q Consensus 290 p 290 (293)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=1.1e-14 Score=128.02 Aligned_cols=79 Identities=23% Similarity=0.371 Sum_probs=74.1
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 022742 208 RNDENSVRVTNLSE-DTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVE 286 (293)
Q Consensus 208 ~~~~~~v~V~nLp~-~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~ 286 (293)
..+.++|||+|||. ++++++|+++|++||.|..|.+++++ +|||||+|.+.++|++||+.|||..+.|+.|+|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45679999999999 99999999999999999999998874 7899999999999999999999999999999999
Q ss_pred eccCC
Q 022742 287 WATPR 291 (293)
Q Consensus 287 ~Akpk 291 (293)
|+++.
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99864
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=3.2e-15 Score=125.03 Aligned_cols=83 Identities=24% Similarity=0.350 Sum_probs=73.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|..||.+.. .++.+..+|.++|||||.|.+.++|++||+ |||..+.|+.|+|.|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 456799999999999999999999999998765 334455678999999999999999999995 999999999999999
Q ss_pred ccCCC
Q 022742 288 ATPRT 292 (293)
Q Consensus 288 Akpk~ 292 (293)
+.++.
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 98753
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=1.5e-14 Score=123.64 Aligned_cols=77 Identities=23% Similarity=0.387 Sum_probs=72.3
Q ss_pred CCceEEEecCCC-CCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEec
Q 022742 210 DENSVRVTNLSE-DTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 288 (293)
Q Consensus 210 ~~~~v~V~nLp~-~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~A 288 (293)
+.++|||+|||. ++++++|+++|++||.|..|.+++++ +|||||+|.+.++|++|+..|||..++|+.|+|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999998764 789999999999999999999999999999999999
Q ss_pred cCC
Q 022742 289 TPR 291 (293)
Q Consensus 289 kpk 291 (293)
++.
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=4.6e-14 Score=110.23 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=71.1
Q ss_pred CCceEEEecC--CCCCC--------HHHHHHhhcCCCCeeEEEEEecCCC--CCeeeEEEEEEcCHHHHHHHHHHhCCce
Q 022742 210 DENSVRVTNL--SEDTR--------EPDLLELFRPFGAVSRVYVAVDQKT--GISRGFGFVNFVNKEDAQRAINKLNGYG 277 (293)
Q Consensus 210 ~~~~v~V~nL--p~~~t--------e~dL~~lF~~~G~i~~v~l~~d~~t--g~~rGfAFV~F~~~e~A~~Ai~~Lng~~ 277 (293)
+++.|.+.|+ |.+.. +++|++.|++||.|.+|.|++++.+ +.++|||||.|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5688999998 44443 3689999999999999999998765 3689999999999999999999999999
Q ss_pred eCCeEEEEEeccC
Q 022742 278 YDNLILRVEWATP 290 (293)
Q Consensus 278 i~g~~L~V~~Akp 290 (293)
++|+.|+|.|+.+
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999754
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=1.6e-14 Score=112.62 Aligned_cols=72 Identities=21% Similarity=0.341 Sum_probs=64.6
Q ss_pred EecCCCCCCHHHHHHhh------------cCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 022742 216 VTNLSEDTREPDLLELF------------RPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLIL 283 (293)
Q Consensus 216 V~nLp~~~te~dL~~lF------------~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L 283 (293)
+.|||..+++++|++.| ++||.|.+|.|++++. ++++|||||.|.+.++|++|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778887777666 9999999999998864 8999999999999999999999999999999999
Q ss_pred EEEec
Q 022742 284 RVEWA 288 (293)
Q Consensus 284 ~V~~A 288 (293)
+|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99987
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=1.4e-13 Score=123.42 Aligned_cols=78 Identities=32% Similarity=0.494 Sum_probs=72.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEe
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 287 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~ 287 (293)
..+.++|||+|||.++++++|+++|++||.|..|.+.++ +|||||.|.+.++|..|+..|||..++|+.|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 356789999999999999999999999999999998643 78999999999999999999999999999999999
Q ss_pred ccCC
Q 022742 288 ATPR 291 (293)
Q Consensus 288 Akpk 291 (293)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 9864
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=2.1e-13 Score=108.83 Aligned_cols=82 Identities=23% Similarity=0.285 Sum_probs=71.9
Q ss_pred CCCceEEEecCCC--CC---CHHHHHHhhcCCCCeeEEEEEecCC----CCCeeeEEEEEEcCHHHHHHHHHHhCCceeC
Q 022742 209 NDENSVRVTNLSE--DT---REPDLLELFRPFGAVSRVYVAVDQK----TGISRGFGFVNFVNKEDAQRAINKLNGYGYD 279 (293)
Q Consensus 209 ~~~~~v~V~nLp~--~~---te~dL~~lF~~~G~i~~v~l~~d~~----tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~ 279 (293)
.++++|++.|+-. ++ -+++|++.|++||.|.+|.|++++. ++.++||+||.|.+.++|.+|++.|||..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3678999999842 22 3578999999999999999999865 4678999999999999999999999999999
Q ss_pred CeEEEEEeccC
Q 022742 280 NLILRVEWATP 290 (293)
Q Consensus 280 g~~L~V~~Akp 290 (293)
|+.|+|.|+..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999753
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.8e-13 Score=105.03 Aligned_cols=75 Identities=17% Similarity=0.302 Sum_probs=64.3
Q ss_pred CceEEEecCC-------CCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 022742 211 ENSVRVTNLS-------EDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLIL 283 (293)
Q Consensus 211 ~~~v~V~nLp-------~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L 283 (293)
.++|.|.-.. .++++++|+++|++||.|..|.|+ +.++|||||+|.+.++|+.||+.++ .+.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 4567776544 468999999999999999999987 4689999999999999999998755 4689999
Q ss_pred EEEeccCCC
Q 022742 284 RVEWATPRT 292 (293)
Q Consensus 284 ~V~~Akpk~ 292 (293)
+|.|+++++
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999999775
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.42 E-value=2.6e-13 Score=115.28 Aligned_cols=75 Identities=17% Similarity=0.368 Sum_probs=66.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCC----C-------CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCcee
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPF----G-------AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGY 278 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~----G-------~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i 278 (293)
..++|||+|||.++++++|+++|++| | .|..+.+ +.++|||||+|.+.++|++|| .|||..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 5555555 456899999999999999999 7999999
Q ss_pred CCeEEEEEeccCC
Q 022742 279 DNLILRVEWATPR 291 (293)
Q Consensus 279 ~g~~L~V~~Akpk 291 (293)
+|+.|+|.|+.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998764
No 202
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.42 E-value=2.9e-13 Score=112.41 Aligned_cols=75 Identities=17% Similarity=0.380 Sum_probs=67.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCC----C-------CeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCcee
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRPF----G-------AVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGY 278 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~~----G-------~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i 278 (293)
+.++|||+|||.++++++|+++|++| | .|..+.+. .++|||||+|.+.++|++|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 67777664 34899999999999999999 8999999
Q ss_pred CCeEEEEEeccCC
Q 022742 279 DNLILRVEWATPR 291 (293)
Q Consensus 279 ~g~~L~V~~Akpk 291 (293)
+|+.|+|.++.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999998765
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.29 E-value=4.5e-12 Score=118.53 Aligned_cols=76 Identities=21% Similarity=0.357 Sum_probs=65.8
Q ss_pred CCCCceEEEec--CCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC---Ce-
Q 022742 208 RNDENSVRVTN--LSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD---NL- 281 (293)
Q Consensus 208 ~~~~~~v~V~n--Lp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~---g~- 281 (293)
..+..+|||+| |+..++|++|+++|++||.|.+|.+.. +||||||+|.+.++|++||+.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999999 588999999999999999999887743 4799999999999999999999999873 34
Q ss_pred -EEEEEecc
Q 022742 282 -ILRVEWAT 289 (293)
Q Consensus 282 -~L~V~~Ak 289 (293)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67888874
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.28 E-value=9.6e-12 Score=98.54 Aligned_cols=77 Identities=18% Similarity=0.329 Sum_probs=65.3
Q ss_pred CCceEEEecCCCCCC----------HHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC
Q 022742 210 DENSVRVTNLSEDTR----------EPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD 279 (293)
Q Consensus 210 ~~~~v~V~nLp~~~t----------e~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~ 279 (293)
+++.|.+.|+=.--. +++|++.|++||.|.+|.|.++. ++||+||.|.+.++|++|++.|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467888888733221 34789999999999999986652 5899999999999999999999999999
Q ss_pred CeEEEEEeccC
Q 022742 280 NLILRVEWATP 290 (293)
Q Consensus 280 g~~L~V~~Akp 290 (293)
|+.|+|.|+.+
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999863
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=3.1e-10 Score=85.81 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=62.9
Q ss_pred CCCceEEEecCCC----CCCH----HHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC
Q 022742 209 NDENSVRVTNLSE----DTRE----PDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN 280 (293)
Q Consensus 209 ~~~~~v~V~nLp~----~~te----~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g 280 (293)
++..||+|.-++. +... .+|.+.|++||.|..++++.++ +||+|.+.++|.+||+ |||..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4457888887762 3333 5688999999999999998763 8999999999999998 99999999
Q ss_pred eEEEEEeccCC
Q 022742 281 LILRVEWATPR 291 (293)
Q Consensus 281 ~~L~V~~Akpk 291 (293)
+.|+|.+++|.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999999874
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2.3e-09 Score=85.54 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=66.3
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcC-HHHHHHHHHHhC--CceeCCeEE
Q 022742 208 RNDENSVRVTNLSED-TREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVN-KEDAQRAINKLN--GYGYDNLIL 283 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~-~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~-~e~A~~Ai~~Ln--g~~i~g~~L 283 (293)
....+.|+|+||+.+ +++++|+++|++||.|..|.++++.. .|||.|.+ ..+|..|+..|| |..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 356789999999999 99999999999999999999988765 49999999 899999999995 678888888
Q ss_pred EEEec
Q 022742 284 RVEWA 288 (293)
Q Consensus 284 ~V~~A 288 (293)
+++..
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77653
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.91 E-value=2.6e-09 Score=93.07 Aligned_cols=66 Identities=26% Similarity=0.268 Sum_probs=60.0
Q ss_pred CHHHHHHhhcCCCCeeEEEEEecC----CCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 224 REPDLLELFRPFGAVSRVYVAVDQ----KTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 224 te~dL~~lF~~~G~i~~v~l~~d~----~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
.+++|++.|++||.|.++.|.++. .++.++||+||.|.+.++|.+|++.|||..++||.|.+.++.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 457899999999999999998654 455999999999999999999999999999999999999874
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=4.7e-09 Score=79.76 Aligned_cols=73 Identities=15% Similarity=0.264 Sum_probs=62.2
Q ss_pred CCCceEEEecCCCC-----CCH----HHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeC
Q 022742 209 NDENSVRVTNLSED-----TRE----PDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYD 279 (293)
Q Consensus 209 ~~~~~v~V~nLp~~-----~te----~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~ 279 (293)
++..||+|.-++.. ... .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||+ |||..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45678999988743 222 4588999999999999999874 9999999999999998 9999999
Q ss_pred CeEEEEEeccC
Q 022742 280 NLILRVEWATP 290 (293)
Q Consensus 280 g~~L~V~~Akp 290 (293)
|+.|+|.+-.|
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998654
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.6e-06 Score=67.42 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=66.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCC-----CCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPF-----GAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLIL 283 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~-----G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L 283 (293)
+..++|-+-|||..++...|+.|+..+ |.|..+.|..|.. -|+|.|.+...|.+|.-.|+|..|+|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 457899999999999999999999999 9999999988743 69999999999999998999999999999
Q ss_pred EEE
Q 022742 284 RVE 286 (293)
Q Consensus 284 ~V~ 286 (293)
++.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 985
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.50 E-value=0.00023 Score=54.79 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=62.2
Q ss_pred CCceEEEecCCCCC-CH----HHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 210 DENSVRVTNLSEDT-RE----PDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 210 ~~~~v~V~nLp~~~-te----~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
-.++|+|+||+.++ .. +.++.+|..|+++......+.- .-..|.|.+.++|.+|-..|++..++|..|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35789999998876 22 4578999999998776665442 1368999999999999999999999999999
Q ss_pred EEeccCC
Q 022742 285 VEWATPR 291 (293)
Q Consensus 285 V~~Akpk 291 (293)
|-|+.|-
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998753
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.0026 Score=48.72 Aligned_cols=73 Identities=22% Similarity=0.184 Sum_probs=59.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcC-----CCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 022742 210 DENSVRVTNLSEDTREPDLLELFRP-----FGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILR 284 (293)
Q Consensus 210 ~~~~v~V~nLp~~~te~dL~~lF~~-----~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~ 284 (293)
-..+|.|.|||+.+.++.|.-+|+. -|+|..+.... +-|+|+|.+...|++.|+. .-+.|++..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4579999999999999999999975 26788877643 3589999999999999863 36788888888
Q ss_pred EEeccCC
Q 022742 285 VEWATPR 291 (293)
Q Consensus 285 V~~Akpk 291 (293)
|....|+
T Consensus 78 V~P~~~~ 84 (104)
T 2dhx_A 78 LRPAPPR 84 (104)
T ss_dssp EEECCCC
T ss_pred EEcCCCC
Confidence 8765554
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.94 E-value=0.0067 Score=45.53 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=61.2
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCC--eeeEEEEEEcCHHHHHHHHHHhCCceeC---C--eEEE
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGI--SRGFGFVNFVNKEDAQRAINKLNGYGYD---N--LILR 284 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~--~rGfAFV~F~~~e~A~~Ai~~Lng~~i~---g--~~L~ 284 (293)
+.|-|.+||+.++|+++.+.++....+...+.+....+.. .-+-|||.|.+.+++..-.+.++|+.+- | .+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4688999999999999999999998877666666544332 2467999999999999999999999764 2 3345
Q ss_pred EEecc
Q 022742 285 VEWAT 289 (293)
Q Consensus 285 V~~Ak 289 (293)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.88 E-value=0.0046 Score=46.93 Aligned_cols=55 Identities=27% Similarity=0.483 Sum_probs=46.6
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhC
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLN 274 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Ln 274 (293)
.+.++| ++|......||..+|+.||.| .|.++.| | .|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET--T-----EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 456666 999999999999999999965 4777766 3 59999999999999998763
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.56 E-value=0.0087 Score=47.09 Aligned_cols=72 Identities=15% Similarity=0.312 Sum_probs=57.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCC-eEEEEE
Q 022742 208 RNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDN-LILRVE 286 (293)
Q Consensus 208 ~~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g-~~L~V~ 286 (293)
..+.+.|.|.+.|+.. -..+...|++||.|.+..... ...+-.|.|.++.+|++||. .||..++| ..|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 3457899999999985 455677899999998877621 23489999999999999997 69999984 777766
Q ss_pred e
Q 022742 287 W 287 (293)
Q Consensus 287 ~ 287 (293)
+
T Consensus 93 p 93 (119)
T 1wwh_A 93 P 93 (119)
T ss_dssp E
T ss_pred E
Confidence 5
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.48 E-value=0.0044 Score=47.14 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=45.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhC
Q 022742 212 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLN 274 (293)
Q Consensus 212 ~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Ln 274 (293)
+.++| ++|......||..+|+.||.| .|.++.| | .|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET--T-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 45556 999999999999999999944 5777766 3 69999999999999998774
No 216
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=95.53 E-value=0.002 Score=49.82 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=30.3
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHh--cCCCCCCc--CCCCCCCcccC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAA--AGATKGTY--VPPGMRAGAER 200 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~y--vpp~~r~~~~~ 200 (293)
+++.|..+|+.+|.+..|+++.+++ -...|.|..+.... .+..+... .....|+. |-..... ..+
T Consensus 18 te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~--------~A~~Ai~~l~~~~~~g~~i~V~~a~~~-~~~ 86 (115)
T 4f25_A 18 DNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQE--------AAERAIEKMNGMLLNDRKVFVGRFKSR-KER 86 (115)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHH--------HHHHHHHHHTTCEETTEECEEEESSCC-CC-
T ss_pred CHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHH--------HHHHHHHHcCCCEECCEEEEEEECCCc-ccc
Confidence 3467999999999999999987422 22345566655421 11122111 11122221 1111000 001
Q ss_pred CCCccccCCCCceEEEecCCCCCCHHH
Q 022742 201 TGTDMRRRNDENSVRVTNLSEDTREPD 227 (293)
Q Consensus 201 ~~~~~~~~~~~~~v~V~nLp~~~te~d 227 (293)
...........++|||+|||+++|++.
T Consensus 87 ~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 87 EAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ---------------------------
T ss_pred ccccccccCCCCceEeCCCCCCccccc
Confidence 111112234567899999999998763
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.18 E-value=0.018 Score=46.39 Aligned_cols=34 Identities=9% Similarity=0.146 Sum_probs=28.4
Q ss_pred EEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCC
Q 022742 240 RVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNG 275 (293)
Q Consensus 240 ~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng 275 (293)
.+.|+++. ..++|||||+|.+.++|++|+..+++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 35666764 36899999999999999999988775
No 218
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.16 E-value=0.0099 Score=47.76 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=37.7
Q ss_pred CCCeeeEEEEEEcCHHHHHHHHHHh-CCceeCCeEEEEEeccC
Q 022742 249 TGISRGFGFVNFVNKEDAQRAINKL-NGYGYDNLILRVEWATP 290 (293)
Q Consensus 249 tg~~rGfAFV~F~~~e~A~~Ai~~L-ng~~i~g~~L~V~~Akp 290 (293)
....+|+++|+|.+.+.|++|++.| ||..++| .+++.++.+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3567999999999999999999999 9999999 999999875
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.08 E-value=0.015 Score=46.44 Aligned_cols=79 Identities=22% Similarity=0.297 Sum_probs=54.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEE-EEec--------CCCC-----CeeeEEEEEEcCHHHHHHHHHHhC
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVY-VAVD--------QKTG-----ISRGFGFVNFVNKEDAQRAINKLN 274 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~-l~~d--------~~tg-----~~rGfAFV~F~~~e~A~~Ai~~Ln 274 (293)
.....|.|-+.|+.... .+-..|++||.|.+-+ ..++ +.+. ....+..|+|.++.+|.+||. .|
T Consensus 5 ~~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 34577888899887654 4557899999986521 1110 0001 124577999999999999997 69
Q ss_pred CceeCCeEEEEEecc
Q 022742 275 GYGYDNLILRVEWAT 289 (293)
Q Consensus 275 g~~i~g~~L~V~~Ak 289 (293)
|..|+|..|-|.+..
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999988887654
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.06 E-value=0.052 Score=41.09 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=55.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCC--eeeEEEEEEcCHHHHHHHHHHhCCceeCC-----eEE
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGI--SRGFGFVNFVNKEDAQRAINKLNGYGYDN-----LIL 283 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~--~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g-----~~L 283 (293)
+-.|-|..||+.++|+++.+.++.+-.+...+.+....+.+ .-.-|||.|.+.++...-.+.++|+.+-+ .+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 45788999999999999888887765543333332222221 12468999999999999999999987642 345
Q ss_pred EEEecc
Q 022742 284 RVEWAT 289 (293)
Q Consensus 284 ~V~~Ak 289 (293)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566663
No 221
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.51 E-value=0.02 Score=55.15 Aligned_cols=57 Identities=21% Similarity=0.371 Sum_probs=42.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHH
Q 022742 209 NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAIN 271 (293)
Q Consensus 209 ~~~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~ 271 (293)
...++|+|. .|..+++.+|.++|++||+|.++.+-.+. | -||.|+|.+.+++..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 446899997 79999999999999999999999887543 2 599999999999887654
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=79.20 E-value=4.2 Score=39.33 Aligned_cols=56 Identities=29% Similarity=0.463 Sum_probs=45.2
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCCeeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCC
Q 022742 211 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNG 275 (293)
Q Consensus 211 ~~~v~V~nLp~~~te~dL~~lF~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng 275 (293)
...++|+ +|..+...+|.++|+.||.+ .|+++.+ | .|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd--t-----~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS--S-----EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC--C-----eEEEEECCHHHHHHHHHHHHh
Confidence 4566665 99999999999999999954 5665543 2 599999999999999998853
No 223
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=78.80 E-value=0.38 Score=35.32 Aligned_cols=34 Identities=9% Similarity=-0.014 Sum_probs=23.7
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.+..|++.. . ...|.|..+..
T Consensus 13 t~~~l~~~F~~~G~i~~v~i~~--~---~~g~afV~f~~ 46 (101)
T 2hvz_A 13 GKGELERAFSYYGPLRTVWIAR--N---PPGFAFVEFED 46 (101)
T ss_dssp SHHHHHHHHHHHCCCSEEEEES--S---SSSEEEEECSS
T ss_pred CHHHHHHHHHhcCCeEEEEEee--C---CCCEEEEEECC
Confidence 3467889999899999999876 2 33445555544
No 224
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=76.60 E-value=0.31 Score=36.74 Aligned_cols=87 Identities=13% Similarity=0.018 Sum_probs=46.6
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCCccccccCCCcccHHHHHhcCCCCCCcCCC-CCCCcccCCCCc
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETAAAAAGATKGTYVPP-GMRAGAERTGTD 204 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvpp-~~r~~~~~~~~~ 204 (293)
++.|..+|+.+|.+..|++... + -+..|.|..+... +.+..+....+|..+.- .++-.- ...
T Consensus 22 ~~~l~~~F~~~G~v~~v~i~~~-~--~~~g~afV~f~~~-----------~~A~~A~~~l~g~~~~g~~l~v~~---a~~ 84 (115)
T 3lqv_A 22 AEEMYDIFGKYGPIRQIRVGNT-P--ETRGTAYVVYEDI-----------FDAKNAVDHLSGFNVSNRYLVVLY---YNA 84 (115)
T ss_dssp HHHHHHHHHTTSCEEEEEEECS-T--TTTTCEEEEESSH-----------HHHHHHHHHHTTCBSSSCBCEEEE---CCH
T ss_pred HHHHHHHHHhcCCeEEEEEeeC-C--CCCcEEEEEECCH-----------HHHHHHHHHcCCCEECCeEEEEEE---ecC
Confidence 4568899999999999999752 1 1244555555442 11111122222322210 000000 000
Q ss_pred cccCCCCceEEEecCCCCCCHHHHHHhhcCCCC
Q 022742 205 MRRRNDENSVRVTNLSEDTREPDLLELFRPFGA 237 (293)
Q Consensus 205 ~~~~~~~~~v~V~nLp~~~te~dL~~lF~~~G~ 237 (293)
... -.+++...++++|.++|++||.
T Consensus 85 ~~~--------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRA--------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHH--------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred Chh--------hhhhhHhHhHHHHHHHHHHhCC
Confidence 000 0467777889999999999984
No 225
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=72.36 E-value=1.6 Score=27.29 Aligned_cols=25 Identities=28% Similarity=0.634 Sum_probs=20.0
Q ss_pred ceEEeeeCCCCCCCccccCCcccCCC
Q 022742 138 VLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 138 ~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
....|++||. ..||...||-+....
T Consensus 9 ~~~~C~~Cgk-~GH~ardCP~~~~~~ 33 (40)
T 1a6b_B 9 DRDQCAYCKE-KGHWAKDCPKKPRGP 33 (40)
T ss_dssp CSSSCSSSCC-TTCCTTSCSSSCCCT
T ss_pred CCCeeeECCC-CCcchhhCcCCcccC
Confidence 3568999996 689999999876543
No 226
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=60.89 E-value=12 Score=25.90 Aligned_cols=59 Identities=12% Similarity=0.209 Sum_probs=38.2
Q ss_pred CCCHHHHHHhhcCCCC-----eeEEEEEecCCCCCeeeEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 022742 222 DTREPDLLELFRPFGA-----VSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWAT 289 (293)
Q Consensus 222 ~~te~dL~~lF~~~G~-----i~~v~l~~d~~tg~~rGfAFV~F~~~e~A~~Ai~~Lng~~i~g~~L~V~~Ak 289 (293)
.+...+|..++..-+. |-.+.+.. .|.||+-.. ..+..+++.|++..+.|+.++|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4566677766654443 44566642 278888865 46788999999999999999998775
No 227
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=59.56 E-value=3.1 Score=27.98 Aligned_cols=24 Identities=29% Similarity=0.656 Sum_probs=19.2
Q ss_pred ceEEeeeCCCCCCCccccCCcccCC
Q 022742 138 VLMVCRTCGKKGDHWTSRCPFKDLA 162 (293)
Q Consensus 138 ~~~~Cr~C~~~g~h~t~~cP~k~~~ 162 (293)
....|+.||. ..||...||-+...
T Consensus 22 ~~~~C~~Cge-~GH~ardCp~~~~~ 45 (56)
T 1u6p_A 22 DRDQCAYCKE-KGHWAKDCPKKPRG 45 (56)
T ss_dssp CTTBCSSSCC-BSSCGGGCTTCCCS
T ss_pred CCCcceeCCC-CCcccccCcCCccc
Confidence 4568999996 67999999986553
No 228
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.18 E-value=7.5 Score=25.94 Aligned_cols=19 Identities=42% Similarity=1.100 Sum_probs=15.5
Q ss_pred EEeeeCCCCCCCccccCCcc
Q 022742 140 MVCRTCGKKGDHWTSRCPFK 159 (293)
Q Consensus 140 ~~Cr~C~~~g~h~t~~cP~k 159 (293)
..|-.||..| ||...||-.
T Consensus 8 ~~C~kCGk~G-H~~k~Cp~~ 26 (55)
T 2ysa_A 8 YTCFRCGKPG-HYIKNCPTN 26 (55)
T ss_dssp CCCTTTCCTT-SCGGGCSGG
T ss_pred CccccCCCcC-cccccCCCC
Confidence 4699999755 999999844
No 229
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=40.17 E-value=6.9 Score=28.58 Aligned_cols=40 Identities=13% Similarity=0.018 Sum_probs=27.2
Q ss_pred hhhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 124 AAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.+++.|..+|+.+|.+..|++..++.......+.|..+..
T Consensus 31 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~ 70 (99)
T 4fxv_A 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 70 (99)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESS
T ss_pred CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECC
Confidence 3456799999999999999998643333333455555544
No 230
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=40.13 E-value=8.6 Score=21.29 Aligned_cols=19 Identities=37% Similarity=0.756 Sum_probs=15.3
Q ss_pred EEeeeCCCCCCCccccCCcc
Q 022742 140 MVCRTCGKKGDHWTSRCPFK 159 (293)
Q Consensus 140 ~~Cr~C~~~g~h~t~~cP~k 159 (293)
..|..||. ..||...||-.
T Consensus 3 ~~Cf~CG~-~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGK-TGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCC-BSSCTTTTTCC
T ss_pred CeeEeCCC-CCcccccCCCc
Confidence 46999995 67999999844
No 231
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.41 E-value=21 Score=26.21 Aligned_cols=39 Identities=5% Similarity=0.070 Sum_probs=27.2
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.+..|+++.++.......|.|..+..
T Consensus 38 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 76 (114)
T 2cq4_A 38 RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE 76 (114)
T ss_dssp CHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESC
T ss_pred CHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCc
Confidence 346799999999999999998643333344455666554
No 232
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=38.93 E-value=25 Score=23.97 Aligned_cols=37 Identities=11% Similarity=-0.096 Sum_probs=24.8
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.+..|++.. ...-...|.|..+..
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~ 56 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYAS 56 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESS
T ss_pred HHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECC
Confidence 3567899999999999999874 222233444555543
No 233
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.81 E-value=22 Score=25.50 Aligned_cols=38 Identities=8% Similarity=-0.064 Sum_probs=26.2
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
++.|..+|+.+|.+..|+++.++...-...|.|..+..
T Consensus 29 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 66 (105)
T 1x5u_A 29 EPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 66 (105)
T ss_dssp HHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESS
T ss_pred HHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECC
Confidence 45789999999999999998743233333455665544
No 234
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=36.12 E-value=23 Score=26.02 Aligned_cols=39 Identities=8% Similarity=-0.010 Sum_probs=27.1
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.+..|++..++...-...|.|..+..
T Consensus 38 te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~ 76 (109)
T 2rs2_A 38 TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 76 (109)
T ss_dssp CHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESS
T ss_pred CHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECC
Confidence 346799999999999999998743333344455665554
No 235
>1axh_A Atracotoxin-HVI, ACTX-HVI; neurotoxin, insecticidal toxin, cystine knot, funnel-WEB; NMR {Hadronyche versuta} SCOP: g.3.6.2
Probab=35.34 E-value=28 Score=20.89 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=11.5
Q ss_pred EEEEEcCCCCeEEE
Q 022742 47 IEYKFNDDGNKVKI 60 (293)
Q Consensus 47 ~~y~~n~~g~kvkv 60 (293)
-+|+.|++|..||.
T Consensus 22 ct~k~NeNGntV~R 35 (37)
T 1axh_A 22 CTFKENENGNTVKR 35 (37)
T ss_dssp EEEEECSSSCEEEE
T ss_pred cceeeccCCcEeee
Confidence 46799999999874
No 236
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=34.95 E-value=14 Score=26.76 Aligned_cols=41 Identities=10% Similarity=-0.034 Sum_probs=27.7
Q ss_pred hhhhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 123 KAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
...++.|..+|+.+|.+..|+++.++...-...+.|..+..
T Consensus 23 ~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~ 63 (100)
T 3ns6_A 23 PVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGS 63 (100)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECC
Confidence 45667899999999999999998643222333444555543
No 237
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.70 E-value=31 Score=25.31 Aligned_cols=38 Identities=13% Similarity=0.027 Sum_probs=26.3
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
++.|..+|+.++.+..|+++.++...-...|.|..+..
T Consensus 31 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 68 (116)
T 2cqd_A 31 DASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 68 (116)
T ss_dssp HHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESS
T ss_pred HHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECC
Confidence 45788999999999999998753323333455665544
No 238
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=33.69 E-value=12 Score=21.19 Aligned_cols=20 Identities=30% Similarity=0.742 Sum_probs=15.8
Q ss_pred ceEEeeeCCCCCCCccccCCc
Q 022742 138 VLMVCRTCGKKGDHWTSRCPF 158 (293)
Q Consensus 138 ~~~~Cr~C~~~g~h~t~~cP~ 158 (293)
..+.|..|+. ..|+...||-
T Consensus 5 ~~~~C~nCgk-~GH~ar~C~~ 24 (29)
T 1nc8_A 5 KVIRCWNCGK-EGHSARQCRA 24 (29)
T ss_dssp CCCBCTTTSC-BSSCGGGCCS
T ss_pred CCCEEEECCc-cccCHhHCcc
Confidence 3578999996 6799999973
No 239
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.56 E-value=22 Score=25.21 Aligned_cols=38 Identities=11% Similarity=-0.048 Sum_probs=26.3
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
++.|..+|+.+|.+..|++..++.......|.|..+..
T Consensus 24 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 61 (99)
T 2dgs_A 24 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 61 (99)
T ss_dssp HHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESS
T ss_pred HHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECC
Confidence 45789999999999999998743333334455555544
No 240
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.29 E-value=23 Score=25.09 Aligned_cols=38 Identities=11% Similarity=-0.097 Sum_probs=26.1
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
++.|..+|+.+|.+..|++..++.......|.|..+..
T Consensus 22 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 59 (99)
T 1whw_A 22 EEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF 59 (99)
T ss_dssp HHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESS
T ss_pred HHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECC
Confidence 45789999999999999998743233334455555544
No 241
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=32.90 E-value=12 Score=27.90 Aligned_cols=39 Identities=3% Similarity=-0.207 Sum_probs=26.3
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.+..|++..++...-...+.|..+..
T Consensus 19 te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~ 57 (110)
T 3s8s_A 19 RETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTS 57 (110)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECC
Confidence 356799999999999999997643323333445555543
No 242
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.63 E-value=24 Score=25.20 Aligned_cols=38 Identities=11% Similarity=-0.078 Sum_probs=26.3
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
++.|..+|+.+|.+..|+++.++...-...+.|..+..
T Consensus 27 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 64 (103)
T 2dnm_A 27 PDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHD 64 (103)
T ss_dssp HHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESS
T ss_pred HHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECC
Confidence 45788999999999999998643323334455665544
No 243
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.78 E-value=1.1e+02 Score=25.04 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=35.9
Q ss_pred eEEEecCCC---------CCCHHHHHHhh--cCCCCeeEEEEEecCCCCCeeeEEEEEEcCH-HHHHHHH
Q 022742 213 SVRVTNLSE---------DTREPDLLELF--RPFGAVSRVYVAVDQKTGISRGFGFVNFVNK-EDAQRAI 270 (293)
Q Consensus 213 ~v~V~nLp~---------~~te~dL~~lF--~~~G~i~~v~l~~d~~tg~~rGfAFV~F~~~-e~A~~Ai 270 (293)
.+.|-|+|. ......|.+.| ..|.++. +..+.++ ..+.|+|.|.|.+- .--..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 445666665 13456889877 9999876 4444443 35789999999854 3344444
No 244
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=31.05 E-value=1.3e+02 Score=20.80 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=13.4
Q ss_pred EEEEcCCCCeEEEEEEE
Q 022742 48 EYKFNDDGNKVKITTTT 64 (293)
Q Consensus 48 ~y~~n~~g~kvkvt~~~ 64 (293)
=|++|++-..|+..+.+
T Consensus 42 Iykyde~tNeI~LkKE~ 58 (72)
T 3kvp_A 42 IYEYNESRNEVKLKKEY 58 (72)
T ss_dssp EEEEETTTTEEEEEEEE
T ss_pred EEEeCCCCCeEEEEEee
Confidence 37888998888887765
No 245
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=28.92 E-value=51 Score=24.37 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=19.0
Q ss_pred CCCeEEEEEEEEcCCCCeEEEEEE
Q 022742 40 ENGVKKVIEYKFNDDGNKVKITTT 63 (293)
Q Consensus 40 ~~g~k~v~~y~~n~~g~kvkvt~~ 63 (293)
..|.-+-+.|++.+||+||++-++
T Consensus 68 ~~~k~tRvg~~~~~dg~kvR~~kk 91 (96)
T 2ftc_N 68 MDRKPTEIEWRFTEAGERVRVSTR 91 (96)
T ss_pred cCCCceEEEEEEccCCcEEEEEec
Confidence 356778899999889998877654
No 246
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.84 E-value=24 Score=25.55 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=26.5
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.+..|++..++.......|.|..+..
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (111)
T 1x4h_A 28 EEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMT 66 (111)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESS
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECC
Confidence 346789999999999999998643323334455555544
No 247
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=28.51 E-value=29 Score=25.46 Aligned_cols=39 Identities=10% Similarity=-0.015 Sum_probs=26.2
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.+..|++..++.......|.|..+..
T Consensus 53 t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 91 (118)
T 2khc_A 53 TDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDN 91 (118)
T ss_dssp CHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEES
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECC
Confidence 456799999999999999998643333333444555543
No 248
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.34 E-value=27 Score=25.02 Aligned_cols=38 Identities=18% Similarity=0.078 Sum_probs=26.3
Q ss_pred hhhHHHhccCCCceEEeeeCCC-CCCCccccCCcccCCC
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGK-KGDHWTSRCPFKDLAA 163 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~-~g~h~t~~cP~k~~~~ 163 (293)
++.|..+|+.+|.+..|+++.. +.......|.|..+..
T Consensus 29 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~ 67 (107)
T 2cph_A 29 QREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFIT 67 (107)
T ss_dssp HHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESS
T ss_pred HHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECC
Confidence 4578999999999999999874 2233344455655544
No 249
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=28.14 E-value=39 Score=20.55 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=11.8
Q ss_pred EEEEEcCCCCeEEE
Q 022742 47 IEYKFNDDGNKVKI 60 (293)
Q Consensus 47 ~~y~~n~~g~kvkv 60 (293)
-+|+.|++|..|+.
T Consensus 23 ct~~~NeNGntV~r 36 (39)
T 2h1z_A 23 CTQERNENGHTVYY 36 (39)
T ss_dssp EEEEECSSCCEEEE
T ss_pred eeEEeccCCCEEEe
Confidence 46889999999875
No 250
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.65 E-value=41 Score=23.34 Aligned_cols=38 Identities=8% Similarity=0.002 Sum_probs=25.5
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
++.|..+|+.+|.+..|+++..+...-...+.|..+..
T Consensus 30 ~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 67 (94)
T 2e5h_A 30 NNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 67 (94)
T ss_dssp HHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESC
T ss_pred HHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECC
Confidence 45689999999999999998743322333445555543
No 251
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.58 E-value=25 Score=25.69 Aligned_cols=38 Identities=5% Similarity=-0.069 Sum_probs=25.9
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.+..|+++.++. .-...+.|..+..
T Consensus 24 te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~ 61 (103)
T 1s79_A 24 TLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDS 61 (103)
T ss_dssp CHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESS
T ss_pred CHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECC
Confidence 3467899999999999999987432 3333444555543
No 252
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.57 E-value=18 Score=26.00 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=26.2
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.+..|+++.++.......+.|..+..
T Consensus 29 t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 67 (105)
T 2dh8_A 29 TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 67 (105)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESS
T ss_pred CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECC
Confidence 346789999999999999998743233333455555544
No 253
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=26.40 E-value=31 Score=26.26 Aligned_cols=39 Identities=5% Similarity=-0.046 Sum_probs=26.1
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.+..|+++.++...-...|.|..+..
T Consensus 59 te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~ 97 (129)
T 2kxn_B 59 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 97 (129)
T ss_dssp CHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESC
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECC
Confidence 345789999999999999998643222333455555544
No 254
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.25 E-value=33 Score=23.95 Aligned_cols=38 Identities=8% Similarity=-0.078 Sum_probs=25.5
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
++.|..+|+.+|.+..|+++.++...-...+.|..+..
T Consensus 19 ~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 56 (95)
T 2dnz_A 19 EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSD 56 (95)
T ss_dssp HHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESC
T ss_pred HHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECC
Confidence 45788999999999999998743223333345555543
No 255
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=25.81 E-value=34 Score=25.40 Aligned_cols=39 Identities=0% Similarity=-0.090 Sum_probs=26.4
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.+..|++..++.......|.|..+..
T Consensus 35 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 73 (126)
T 3ex7_B 35 TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYET 73 (126)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESS
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECC
Confidence 346788999999999999987643333334455665544
No 256
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=25.70 E-value=28 Score=25.83 Aligned_cols=39 Identities=8% Similarity=-0.029 Sum_probs=26.8
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.+..|+++.++.......|.|..+..
T Consensus 49 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 87 (124)
T 2jwn_A 49 TAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAE 87 (124)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESS
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECC
Confidence 346789999999999999998643333334455665554
No 257
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=25.31 E-value=32 Score=25.56 Aligned_cols=38 Identities=5% Similarity=-0.060 Sum_probs=25.7
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.+..|+++.++ ......|.|..+..
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~ 57 (116)
T 2fy1_A 20 NEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFEN 57 (116)
T ss_dssp CHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSS
T ss_pred CHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECC
Confidence 345788999999999999998743 22333455555544
No 258
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.69 E-value=32 Score=24.45 Aligned_cols=38 Identities=5% Similarity=-0.192 Sum_probs=25.8
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
++.|..+|+.+|.+..|+++.++...-...+.|..+..
T Consensus 26 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 63 (102)
T 2cqb_A 26 DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFEL 63 (102)
T ss_dssp HHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSS
T ss_pred HHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECC
Confidence 46788999999999999997643333334445555544
No 259
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.68 E-value=28 Score=25.51 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=26.4
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.+..|++..++.......|.|..+..
T Consensus 40 te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 78 (116)
T 1x4b_A 40 TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 78 (116)
T ss_dssp CHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSS
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCC
Confidence 346789999999999999998743223333455555544
No 260
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=23.86 E-value=68 Score=24.42 Aligned_cols=39 Identities=8% Similarity=-0.066 Sum_probs=26.6
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.+..|++..++...-...+.|..+..
T Consensus 60 te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~ 98 (135)
T 2lea_A 60 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 98 (135)
T ss_dssp HHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSC
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECC
Confidence 346788999999999999998643233334455666654
No 261
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=23.82 E-value=35 Score=32.06 Aligned_cols=39 Identities=8% Similarity=-0.103 Sum_probs=26.9
Q ss_pred hhhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.+|.|..|.++..+...-...|.|+.+..
T Consensus 115 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~ 153 (437)
T 3pgw_S 115 TESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEH 153 (437)
T ss_pred CHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeecc
Confidence 346799999999999999997643233334456666654
No 262
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=21.97 E-value=34 Score=24.71 Aligned_cols=38 Identities=3% Similarity=-0.062 Sum_probs=26.2
Q ss_pred hhhHHHhccCCCceEEeeeCCCCCCCccccCCcccCCC
Q 022742 126 GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 126 ~~~l~~~~~~~~~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
++.|..+|+.+|.+..|++..++.......|.|..+..
T Consensus 40 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 77 (110)
T 1oo0_B 40 EDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET 77 (110)
T ss_dssp HHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESS
T ss_pred HHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECC
Confidence 45788999999999999997643333344455655544
No 263
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=21.66 E-value=43 Score=28.26 Aligned_cols=39 Identities=3% Similarity=0.066 Sum_probs=26.7
Q ss_pred hhhhHHHhccCCC--ceEEeeeCCCCCCCccccCCcccCCC
Q 022742 125 AGDSLAQLGKGGA--VLMVCRTCGKKGDHWTSRCPFKDLAA 163 (293)
Q Consensus 125 ~~~~l~~~~~~~~--~~~~Cr~C~~~g~h~t~~cP~k~~~~ 163 (293)
.++.|..+|+.++ .+..|++..++.......|-|..+..
T Consensus 81 te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~ 121 (229)
T 3q2s_C 81 TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGS 121 (229)
T ss_dssp CHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred CHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECC
Confidence 3467999999999 89999987643333334456666654
No 264
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=20.90 E-value=34 Score=26.04 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=19.3
Q ss_pred cCC-CCeEEEEEEEEcCCCCeEEEEE
Q 022742 38 PDE-NGVKKVIEYKFNDDGNKVKITT 62 (293)
Q Consensus 38 ~~~-~g~k~v~~y~~n~~g~kvkvt~ 62 (293)
.++ .|.-+-+.|++++||+||++-+
T Consensus 75 v~p~~~k~tRvg~~~~edG~kvRv~k 100 (110)
T 3v2d_Y 75 ICPACGKPTRVRKKFLENGKKIRVCA 100 (110)
T ss_dssp BCTTTCSBCCEEEEECSSCCEEEEES
T ss_pred EcCcCCCccEEEEEECCCCcEEEEEe
Confidence 343 5667889999999999887754
Done!