Query 022743
Match_columns 292
No_of_seqs 216 out of 523
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:49:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4282 Transcription factor G 99.9 1.8E-24 3.8E-29 206.2 22.6 225 45-291 54-325 (345)
2 PF13837 Myb_DNA-bind_4: Myb/S 99.9 2.3E-22 5E-27 155.7 8.3 85 46-131 2-90 (90)
3 PF13873 Myb_DNA-bind_5: Myb/S 98.4 1.3E-06 2.8E-11 66.5 8.4 66 44-109 1-74 (78)
4 smart00595 MADF subfamily of S 98.2 2E-06 4.3E-11 66.6 3.9 71 56-131 2-84 (89)
5 PF12776 Myb_DNA-bind_3: Myb/S 98.0 1.5E-05 3.3E-10 62.2 6.0 66 47-112 1-70 (96)
6 PF10545 MADF_DNA_bdg: Alcohol 97.7 2.9E-05 6.2E-10 58.5 2.7 62 65-129 17-83 (85)
7 PF00249 Myb_DNA-binding: Myb- 97.5 0.00018 4E-09 50.2 5.1 47 46-104 2-48 (48)
8 PF13921 Myb_DNA-bind_6: Myb-l 97.3 0.00022 4.8E-09 51.5 3.5 43 48-104 1-44 (60)
9 smart00717 SANT SANT SWI3, AD 97.2 0.00059 1.3E-08 45.6 4.5 47 46-105 2-48 (49)
10 cd00167 SANT 'SWI3, ADA2, N-Co 97.0 0.0012 2.6E-08 43.4 4.3 44 47-103 1-44 (45)
11 PLN03212 Transcription repress 93.1 0.21 4.6E-06 47.0 5.9 49 44-104 24-72 (249)
12 PLN03212 Transcription repress 91.3 0.59 1.3E-05 44.0 6.6 55 40-108 73-127 (249)
13 KOG1029 Endocytic adaptor prot 91.2 1.6 3.5E-05 47.2 10.3 39 236-278 363-404 (1118)
14 PLN03091 hypothetical protein; 90.5 0.75 1.6E-05 46.6 6.9 56 40-109 62-117 (459)
15 PLN03091 hypothetical protein; 90.2 0.42 9E-06 48.4 4.8 47 44-102 13-59 (459)
16 COG5259 RSC8 RSC chromatin rem 87.4 1.1 2.3E-05 45.9 5.4 70 22-105 251-325 (531)
17 KOG1279 Chromatin remodeling f 84.9 1.1 2.4E-05 46.1 4.3 48 44-105 252-299 (506)
18 PF04504 DUF573: Protein of un 80.2 12 0.00026 30.2 7.8 63 46-111 5-69 (98)
19 KOG0051 RNA polymerase I termi 76.7 3.6 7.7E-05 43.3 4.7 63 43-109 434-512 (607)
20 KOG0049 Transcription factor, 71.7 8.3 0.00018 41.3 5.8 56 41-108 249-304 (939)
21 COG4741 Predicted secreted end 64.5 77 0.0017 28.4 9.5 30 204-237 24-53 (175)
22 PRK13831 conjugal transfer pro 64.5 6.4 0.00014 39.9 3.3 51 234-289 122-172 (432)
23 KOG0048 Transcription factor, 60.2 8.8 0.00019 35.3 3.2 45 46-102 10-54 (238)
24 TIGR02894 DNA_bind_RsfA transc 48.2 43 0.00094 29.8 5.4 58 44-109 3-61 (161)
25 PF13300 DUF4078: Domain of un 45.5 1.1E+02 0.0024 24.5 6.9 40 241-288 46-85 (88)
26 KOG1029 Endocytic adaptor prot 42.4 2.2E+02 0.0048 31.7 10.4 39 215-253 326-369 (1118)
27 KOG3054 Uncharacterized conser 38.3 3.8E+02 0.0081 25.9 10.6 15 274-288 196-210 (299)
28 PRK13923 putative spore coat p 36.6 89 0.0019 28.1 5.6 58 44-109 4-62 (170)
29 PF00435 Spectrin: Spectrin re 32.4 2E+02 0.0043 21.0 7.3 62 49-111 32-93 (105)
30 PLN03086 PRLI-interacting fact 31.8 2.2E+02 0.0048 30.1 8.4 15 247-261 27-41 (567)
31 KOG4661 Hsp27-ERE-TATA-binding 30.3 1.8E+02 0.0039 31.2 7.3 13 98-110 420-432 (940)
32 PF08994 T4_Gp59_C: T4 gene Gp 29.8 1.6E+02 0.0034 24.5 5.5 56 51-107 45-102 (103)
33 PF03154 Atrophin-1: Atrophin- 29.8 25 0.00055 39.1 1.2 15 228-242 592-606 (982)
34 KOG4282 Transcription factor G 28.8 3.1E+02 0.0068 26.3 8.4 27 262-288 309-335 (345)
35 PF11600 CAF-1_p150: Chromatin 27.8 4.2E+02 0.0092 24.0 8.6 28 261-288 162-190 (216)
36 TIGR01557 myb_SHAQKYF myb-like 27.3 1.3E+02 0.0028 22.0 4.2 44 45-100 3-50 (57)
37 PF07750 GcrA: GcrA cell cycle 27.0 68 0.0015 28.2 3.2 39 46-97 1-39 (162)
38 PF14920 MTBP_C: MDM2-binding 25.6 1.6E+02 0.0035 28.0 5.5 57 71-135 186-246 (251)
39 KOG2412 Nuclear-export-signal 25.5 8.4E+02 0.018 26.0 11.0 20 121-140 66-85 (591)
40 PTZ00332 paraflagellar rod pro 25.2 6E+02 0.013 26.9 9.9 77 208-288 277-369 (589)
41 KOG0457 Histone acetyltransfer 24.0 2E+02 0.0044 29.5 6.2 46 44-102 71-116 (438)
42 PF06991 Prp19_bind: Splicing 23.5 2.2E+02 0.0048 27.3 6.1 32 237-268 117-149 (276)
43 PRK07217 replication factor A; 22.5 1.2E+02 0.0026 29.8 4.2 34 75-108 6-39 (311)
44 PF10691 DUF2497: Protein of u 22.3 2.6E+02 0.0056 21.7 5.2 36 201-236 32-72 (73)
45 PF14420 Clr5: Clr5 domain 22.3 1.3E+02 0.0029 21.4 3.5 27 75-101 21-48 (54)
46 KOG2002 TPR-containing nuclear 22.0 6.3E+02 0.014 28.7 9.8 16 225-240 822-837 (1018)
No 1
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=99.93 E-value=1.8e-24 Score=206.19 Aligned_cols=225 Identities=25% Similarity=0.377 Sum_probs=152.0
Q ss_pred CCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhcccCCC-cccCCCCC
Q 022743 45 FPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKGCETTEP-EAMRQQFP 123 (292)
Q Consensus 45 ~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~YKkiK~~~~-~~gr~~wp 123 (292)
.+.|+.+||++||.||++++..|..+++|.++|++||++|.+.||.||+.||+.||+||+++||+.+.... ..+..+|+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~s~~~ 133 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEGSSWK 133 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCCccch
Confidence 48999999999999999999999999999999999999999999999999999999999999999865433 22345999
Q ss_pred ChHhHHHHhc-Cccc----cch--hhhcccC--cch-hhhh---h-cc--CCCCccc-----ccccc----cc--cc---
Q 022743 124 FYNELQAIFA-SRMQ----RML--WAETEGG--SKK-KAAA---A-VQ--LSSEEED-----FNEES----EG--EK--- 173 (292)
Q Consensus 124 fFdeLD~Ilg-~~~~----~~l--~~E~~~g--~~~-~~~~---~-~~--~ss~~~~-----~~ed~----~~--~~--- 173 (292)
||..||.++. ..+. .++ ...++.+ .+. .... . .. .++.+.+ .+.+. +. ..
T Consensus 134 ff~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 213 (345)
T KOG4282|consen 134 FFSELEALLITFKARPRSDEVGPGNASAPLTLSVSSEPQFSSNPTELQFDGSSLEDSSQPSGLNEDNSNSSSPEPVAGSL 213 (345)
T ss_pred HHHHHHHHHhccCCCCCCCCCCcccccCccccCCCCCCCCCCCccccccCCCcCCCCCcccccCccccccCCCCCCCcch
Confidence 9999999996 2221 111 0011100 000 0000 0 00 0000000 00000 00 00
Q ss_pred ------cc-------c---ccccccccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 022743 174 ------GN-------V---MRKKKKSKSSTGGAGASGSGSASSSHNFKEILEEFMKQQMQMEMQWREAFEARENERRIKE 237 (292)
Q Consensus 174 ------~~-------~---~~kkrk~~~~~~~~~~~~~~s~~~~~~~~~~~~~~m~~Q~~m~~~~~e~~e~re~eR~~rE 237 (292)
.+ . ..+.+++. .+. .....++.++++.+++.|+.|...++.+.+.++++|+.++
T Consensus 214 ~~~~~~s~~~~~s~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (345)
T KOG4282|consen 214 SNDTSSSSSPDDSADSEGGKSSSRKRR--VRK--------DGSKEGIEELMREVARSQERLDEVLERVEEKKEQERMSEE 283 (345)
T ss_pred hhccccccchhcccccccCCCCCCCcc--ccc--------cccchhHHHHhhhhhhhHHHHHHHHHHHhccchHhhhhHH
Confidence 00 0 00001000 000 0124589999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Q 022743 238 MEWRQTMEALENERIMMDRRLREREEQRRMREEARAEKRDALITALLNKLRRED 291 (292)
Q Consensus 238 e~Wr~~m~~Le~er~~~e~~w~~re~~~r~re~a~a~~Rda~~~~~l~k~~~~~ 291 (292)
+.||.+ +.+| .+ |...+.+++.....++..+|.+++.+++..
T Consensus 284 e~~r~~----~~~r-~k-------e~e~~~~~~~~~~~~~i~~i~~~~~~~~~~ 325 (345)
T KOG4282|consen 284 EKWRME----EIER-NK-------ELELARQERIQETQLEIRSIKAIQASRRGS 325 (345)
T ss_pred HHHHHH----HHHh-cc-------hHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 999987 5555 22 445566677777889999999999887653
No 2
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=99.87 E-value=2.3e-22 Score=155.74 Aligned_cols=85 Identities=35% Similarity=0.756 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHHh--hhHHhhh--hchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhcccCCCcccCCC
Q 022743 46 PQWSVQETKEFLVIRAE--LDRSFME--TKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKGCETTEPEAMRQQ 121 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e--~e~~F~~--skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~YKkiK~~~~~~gr~~ 121 (292)
..||++||.+||.+|.+ ++..|.. ..++..+|+.||..|.+.||.||+.||+.||+||++.|++++......|. +
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~~~~~~~-~ 80 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDRNKKSGS-S 80 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSSSS-----S
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCC-c
Confidence 57999999999999999 5667874 45777899999999999999999999999999999999999877656665 9
Q ss_pred CCChHhHHHH
Q 022743 122 FPFYNELQAI 131 (292)
Q Consensus 122 wpfFdeLD~I 131 (292)
||||++||+|
T Consensus 81 w~~f~~md~i 90 (90)
T PF13837_consen 81 WPYFDEMDEI 90 (90)
T ss_dssp ---TT-----
T ss_pred CcCHHHHhcC
Confidence 9999999986
No 3
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=98.43 E-value=1.3e-06 Score=66.47 Aligned_cols=66 Identities=29% Similarity=0.438 Sum_probs=54.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhh-------hchhhHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhhhh
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFME-------TKRNKLLWEVISTRMREKGY-NRSAEQCKCKWKNLVTRYKG 109 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~-------skrn~~lWe~IS~kM~e~Gy-~RTaeQCk~KwkNLkk~YKk 109 (292)
|.++||.+|+..||.+.......+.+ ...+..+|+.|+..|...|+ .||+.||+.||.||+..-|+
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk 74 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK 74 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 67899999999999998876543333 13668999999999999877 79999999999999986554
No 4
>smart00595 MADF subfamily of SANT domain.
Probab=98.16 E-value=2e-06 Score=66.61 Aligned_cols=71 Identities=21% Similarity=0.491 Sum_probs=50.1
Q ss_pred HHHHHHhhh-------HHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhcccC---CCccc--CCCCC
Q 022743 56 FLVIRAELD-------RSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKGCETT---EPEAM--RQQFP 123 (292)
Q Consensus 56 LI~Ir~e~e-------~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~YKkiK~~---~~~~g--r~~wp 123 (292)
||.++.... ..|........+|..|+..|.. |+..|+.||++|+..|...... ....| ...|+
T Consensus 2 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aW~~Ia~~l~~-----~~~~~~~kw~~LR~~y~~e~~r~~~~~~~~~~~~~w~ 76 (89)
T smart00595 2 LIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGL-----SVEECKKRWKNLRDRYRRELKRLQNGKSGGGKKSKWE 76 (89)
T ss_pred hHHHHHhCccccCCCChhhcChHHHHHHHHHHHHHHCc-----CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCch
Confidence 555555443 3444444567799999999865 9999999999999999874211 11122 46899
Q ss_pred ChHhHHHH
Q 022743 124 FYNELQAI 131 (292)
Q Consensus 124 fFdeLD~I 131 (292)
||+.|.=|
T Consensus 77 ~~~~m~FL 84 (89)
T smart00595 77 YFDRLSFL 84 (89)
T ss_pred hhHhhhhH
Confidence 99999754
No 5
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=97.99 E-value=1.5e-05 Score=62.21 Aligned_cols=66 Identities=27% Similarity=0.377 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHhhh--HHh-hhhchhhHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhhhhccc
Q 022743 47 QWSVQETKEFLVIRAELD--RSF-METKRNKLLWEVISTRMREK-GYNRSAEQCKCKWKNLVTRYKGCET 112 (292)
Q Consensus 47 ~WT~eET~aLI~Ir~e~e--~~F-~~skrn~~lWe~IS~kM~e~-Gy~RTaeQCk~KwkNLkk~YKkiK~ 112 (292)
+||++.+..||++..+.- ... .++.-++..|..|+..|.+. |...|..||++||+.|++.|+.++.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~ 70 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKE 70 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999998753 233 24567789999999999964 8889999999999999999998754
No 6
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=97.68 E-value=2.9e-05 Score=58.51 Aligned_cols=62 Identities=26% Similarity=0.549 Sum_probs=46.0
Q ss_pred HHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhcccCC-----CcccCCCCCChHhHH
Q 022743 65 RSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKGCETTE-----PEAMRQQFPFYNELQ 129 (292)
Q Consensus 65 ~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~YKkiK~~~-----~~~gr~~wpfFdeLD 129 (292)
..|.........|..|+..| |...++..|+.+|.+|...|...+... +.....+|.||+.|.
T Consensus 17 ~~y~~~~~r~~aw~~Ia~~l---~~~~~~~~~~~~w~~Lr~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (85)
T PF10545_consen 17 PDYKNRQLREEAWQEIAREL---GKEFSVDDCKKRWKNLRDRYRRELKKIKSSGGSEEYVPTWSYYEELS 83 (85)
T ss_pred cccCCHHHHHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHCc
Confidence 34544457789999999998 666789999999999999998754221 112235899999874
No 7
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.55 E-value=0.00018 Score=50.18 Aligned_cols=47 Identities=28% Similarity=0.608 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLV 104 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLk 104 (292)
..||.+|...|+.+...... .-|..||..|. -.||+.||+.+|.+|+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~---------~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGK---------DNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTT---------THHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCC---------cHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 46999999999998877531 16999999887 6699999999999873
No 8
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.34 E-value=0.00022 Score=51.53 Aligned_cols=43 Identities=28% Similarity=0.695 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 022743 48 WSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKN-LV 104 (292)
Q Consensus 48 WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkN-Lk 104 (292)
||.+|...|+.++.... .-|..||..|. .||+.+|+.+|.+ |.
T Consensus 1 WT~eEd~~L~~~~~~~g----------~~W~~Ia~~l~----~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG----------NDWKKIAEHLG----NRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHT----------S-HHHHHHHST----TS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHC----------cCHHHHHHHHC----cCCHHHHHHHHHHHCc
Confidence 99999999999988742 24999999973 7999999999999 53
No 9
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.24 E-value=0.00059 Score=45.56 Aligned_cols=47 Identities=28% Similarity=0.684 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVT 105 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk 105 (292)
..||.+|...|+.+...... .-|..||..|. .||+.+|+.+|.++.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~---------~~w~~Ia~~~~----~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK---------NNWEKIAKELP----GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc---------CCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 46999999999998776422 45999999985 7999999999998753
No 10
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.02 E-value=0.0012 Score=43.44 Aligned_cols=44 Identities=27% Similarity=0.667 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 022743 47 QWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNL 103 (292)
Q Consensus 47 ~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNL 103 (292)
.||.+|...|+.+...... ..|..|+..|.. ||+.+|+.+|.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---------~~w~~Ia~~~~~----rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---------NNWEKIAKELPG----RTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---------CCHHHHHhHcCC----CCHHHHHHHHHHh
Confidence 4999999999998876521 459999999853 9999999999886
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=93.07 E-value=0.21 Score=46.99 Aligned_cols=49 Identities=20% Similarity=0.543 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLV 104 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLk 104 (292)
+...||.+|-..|+.+..... ..-|..||..| |..||+.||+.+|.|..
T Consensus 24 KRg~WT~EEDe~L~~lV~kyG---------~~nW~~IAk~~---g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKEG---------EGRWRSLPKRA---GLLRCGKSCRLRWMNYL 72 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHhC---------cccHHHHHHhh---hcCCCcchHHHHHHHhh
Confidence 456899999999998766531 13499998764 57799999999999754
No 12
>PLN03212 Transcription repressor MYB5; Provisional
Probab=91.31 E-value=0.59 Score=44.05 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=42.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 022743 40 DTSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYK 108 (292)
Q Consensus 40 ~~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~YK 108 (292)
.|.-....||.+|-..||.+...+ +.-|-.||..|. .||..+|+++|.++.+.+.
T Consensus 73 ~P~I~kgpWT~EED~lLlel~~~~----------GnKWs~IAk~Lp----GRTDnqIKNRWns~LrK~l 127 (249)
T PLN03212 73 RPSVKRGGITSDEEDLILRLHRLL----------GNRWSLIAGRIP----GRTDNEIKNYWNTHLRKKL 127 (249)
T ss_pred chhcccCCCChHHHHHHHHHHHhc----------cccHHHHHhhcC----CCCHHHHHHHHHHHHhHHH
Confidence 344455789999999999876553 145999999883 4999999999998776553
No 13
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.17 E-value=1.6 Score=47.20 Aligned_cols=39 Identities=36% Similarity=0.559 Sum_probs=23.0
Q ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 022743 236 KEMEWRQTME---ALENERIMMDRRLREREEQRRMREEARAEKRDA 278 (292)
Q Consensus 236 rEe~Wr~~m~---~Le~er~~~e~~w~~re~~~r~re~a~a~~Rda 278 (292)
-|.+|++|.+ .||+-|+.- |+|||+++.+-+++.++|..
T Consensus 363 qEqErk~qlElekqLerQReiE----~qrEEerkkeie~rEaar~E 404 (1118)
T KOG1029|consen 363 QEQERKAQLELEKQLERQREIE----RQREEERKKEIERREAAREE 404 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3677887733 355556543 46777777665555555443
No 14
>PLN03091 hypothetical protein; Provisional
Probab=90.52 E-value=0.75 Score=46.60 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=44.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhh
Q 022743 40 DTSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKG 109 (292)
Q Consensus 40 ~~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~YKk 109 (292)
+|.-....||.+|-..||.++..+ +.-|-.||..| -.||..+||++|..+.+.|.+
T Consensus 62 dP~IkKgpWT~EED~lLLeL~k~~----------GnKWskIAk~L----PGRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 62 RPDLKRGTFSQQEENLIIELHAVL----------GNRWSQIAAQL----PGRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred CCcccCCCCCHHHHHHHHHHHHHh----------CcchHHHHHhc----CCCCHHHHHHHHHHHHHHHHH
Confidence 344445689999999999988763 24699999987 359999999999998877644
No 15
>PLN03091 hypothetical protein; Provisional
Probab=90.18 E-value=0.42 Score=48.40 Aligned_cols=47 Identities=23% Similarity=0.567 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKN 102 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkN 102 (292)
+...||.+|=..|+.+...+. ..-|..|+.. .|..||++||+.+|.|
T Consensus 13 rKg~WTpEEDe~L~~~V~kyG---------~~nWs~IAk~---~g~gRT~KQCRERW~N 59 (459)
T PLN03091 13 RKGLWSPEEDEKLLRHITKYG---------HGCWSSVPKQ---AGLQRCGKSCRLRWIN 59 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhC---------cCCHHHHhhh---hccCcCcchHhHHHHh
Confidence 445799999999998776531 1369999865 4678999999999986
No 16
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=87.35 E-value=1.1 Score=45.88 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=47.7
Q ss_pred hhhhhhhccCCCCcccCCCC---CC--CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHH
Q 022743 22 QQQQQQHLQHPPHISVNVDT---SD--RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQC 96 (292)
Q Consensus 22 ~~~~Qq~~~~~~~~s~~~~~---~~--R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQC 96 (292)
...+||-.+.+++.+...-+ .. +-.+||.+|+..||.-...+. .-|..||... | .+|.+||
T Consensus 251 ~~C~~qg~f~s~~~ssDf~~v~~~~~~~dk~WS~qE~~LLLEGIe~yg----------DdW~kVA~HV---g-tKt~EqC 316 (531)
T COG5259 251 SECYDQGRFPSEFTSSDFKPVTISLLIRDKNWSRQELLLLLEGIEMYG----------DDWDKVARHV---G-TKTKEQC 316 (531)
T ss_pred hHHHhcCcCCCccccccchhhhhhcccccccccHHHHHHHHHHHHHhh----------hhHHHHHHHh---C-CCCHHHH
Confidence 34444445555545443322 11 335999999999998665542 5699998775 4 7999999
Q ss_pred HHHHHHHHH
Q 022743 97 KCKWKNLVT 105 (292)
Q Consensus 97 k~KwkNLkk 105 (292)
--+|=+|-.
T Consensus 317 Il~FL~LPi 325 (531)
T COG5259 317 ILHFLQLPI 325 (531)
T ss_pred HHHHHcCCc
Confidence 999998854
No 17
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=84.85 E-value=1.1 Score=46.14 Aligned_cols=48 Identities=27% Similarity=0.396 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVT 105 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk 105 (292)
-.+.||++||+.||....-+ +..|..|+.... .+|.+||-.||-.|-.
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y----------~ddW~kVa~hVg----~ks~eqCI~kFL~LPi 299 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMY----------GDDWNKVADHVG----TKSQEQCILKFLRLPI 299 (506)
T ss_pred CCCCccHHHHHHHHHHHHHh----------cccHHHHHhccC----CCCHHHHHHHHHhcCc
Confidence 34789999999999865543 257999987755 8999999999988753
No 18
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=80.22 E-value=12 Score=30.19 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhh--chhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhcc
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMET--KRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKGCE 111 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~s--krn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~YKkiK 111 (292)
..||.+.=..||....+....=... .--..+++.|...| .+..|..|..+|++.|++.|....
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l---~~~~s~~Ql~~KirrLK~Ky~~~~ 69 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSL---SFDVSKNQLYDKIRRLKKKYRNAV 69 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHc---cCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3599887777777665542111000 01135666665554 577899999999999999999864
No 19
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=76.74 E-value=3.6 Score=43.33 Aligned_cols=63 Identities=25% Similarity=0.395 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhH---Hhh--h------hch-----hhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 022743 43 DRFPQWSVQETKEFLVIRAELDR---SFM--E------TKR-----NKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTR 106 (292)
Q Consensus 43 ~R~~~WT~eET~aLI~Ir~e~e~---~F~--~------skr-----n~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~ 106 (292)
.....||.+|...||.+..++-. .|. . -.+ ..--|-.||.. +-.|+..||+.||..|...
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~----~~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEM----LGTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHh----hcCCCcchHHHHHHHHHhh
Confidence 35678999999999999987642 231 0 011 23448888884 4469999999999999988
Q ss_pred hhh
Q 022743 107 YKG 109 (292)
Q Consensus 107 YKk 109 (292)
|-.
T Consensus 510 ~s~ 512 (607)
T KOG0051|consen 510 PSF 512 (607)
T ss_pred HHh
Confidence 764
No 20
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=71.69 E-value=8.3 Score=41.30 Aligned_cols=56 Identities=25% Similarity=0.407 Sum_probs=42.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 022743 41 TSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYK 108 (292)
Q Consensus 41 ~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~YK 108 (292)
|+-+...||.+|...|++|=.- +. ..-|+.|+. ++|-+||+-||-.||+.-.+..+
T Consensus 249 P~~nk~~WS~EE~E~L~AiA~A--~~-------~~~W~~IA~---~Lgt~RS~yQC~~kF~t~~~~L~ 304 (939)
T KOG0049|consen 249 PKWNKEHWSNEEVEKLKALAEA--PK-------FVSWPMIAL---NLGTNRSSYQCMEKFKTEVSQLS 304 (939)
T ss_pred CccchhccChHHHHHHHHHHhc--cc-------cccHHHHHH---HhCCCcchHHHHHHHHHHHHHHH
Confidence 3445678999999999987654 22 355999975 46889999999999998766554
No 21
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=64.54 E-value=77 Score=28.36 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 022743 204 FKEILEEFMKQQMQMEMQWREAFEARENERRIKE 237 (292)
Q Consensus 204 ~~~~~~~~m~~Q~~m~~~~~e~~e~re~eR~~rE 237 (292)
+..|=.+|--++..|+.+|.-+ +.+|...|
T Consensus 24 Ir~lq~~~e~k~~~l~e~l~~~----e~~r~v~e 53 (175)
T COG4741 24 IRSLQGKVESKARELEETLQKA----ERERLVNE 53 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 3444455555666676666654 44444444
No 22
>PRK13831 conjugal transfer protein TrbI; Provisional
Probab=64.49 E-value=6.4 Score=39.91 Aligned_cols=51 Identities=31% Similarity=0.453 Sum_probs=38.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 022743 234 RIKEMEWRQTMEALENERIMMDRRLREREEQRRMREEARAEKRDALITALLNKLRR 289 (292)
Q Consensus 234 ~~rEe~Wr~~m~~Le~er~~~e~~w~~re~~~r~re~a~a~~Rda~~~~~l~k~~~ 289 (292)
+..|++||-+| .|..+|+..|||-.|+.|+=+|.+++.|..|..-+-|+..
T Consensus 122 ~e~~~~w~~~~-----~~~~~e~~~~~~~~q~~a~~~a~~~~~~~~~~~~~~~~~~ 172 (432)
T PRK13831 122 LESEEEWRARL-----KREQEEQYLRERQRQRMARLQANAAAYDSPLAVDIGKVEK 172 (432)
T ss_pred cccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcchhhcCccccchHHHhh
Confidence 45688998653 3445566666778899999999999999888877777643
No 23
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=60.20 E-value=8.8 Score=35.33 Aligned_cols=45 Identities=16% Similarity=0.394 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKN 102 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkN 102 (292)
..||.+|=..|+.+....-. .-|-.|+.. .|..|++++|+-.|-|
T Consensus 10 GpWt~EED~~L~~~V~~~G~---------~~W~~i~k~---~gl~R~GKSCRlRW~N 54 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGK---------HNGTALPKL---AGLRRCGKSCRLRWTN 54 (238)
T ss_pred CCCChHHHHHHHHHHHHhCC---------CCcchhhhh---cCCCccchHHHHHhhc
Confidence 67999999999987766421 268888765 4668999999999997
No 24
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=48.21 E-value=43 Score=29.82 Aligned_cols=58 Identities=21% Similarity=0.406 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hhhh
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVT-RYKG 109 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk-~YKk 109 (292)
|-..||.++=+.|-.+--. -...+...-..|++|...| +||+--|.-.|...++ .|..
T Consensus 3 RQDAWT~eeDlLLAEtVLr---hIReG~TQL~AFeEvg~~L-----~RTsAACGFRWNs~VRkqY~~ 61 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLR---HIREGSTQLSAFEEVGRAL-----NRTAAACGFRWNAYVRKQYEE 61 (161)
T ss_pred cccccccHHHHHHHHHHHH---HHhcchHHHHHHHHHHHHH-----cccHHHhcchHHHHHHHHHHH
Confidence 5578999998877665433 2334445557789998885 6899999999998664 5764
No 25
>PF13300 DUF4078: Domain of unknown function (DUF4078)
Probab=45.53 E-value=1.1e+02 Score=24.49 Aligned_cols=40 Identities=40% Similarity=0.510 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 022743 241 RQTMEALENERIMMDRRLREREEQRRMREEARAEKRDALITALLNKLR 288 (292)
Q Consensus 241 r~~m~~Le~er~~~e~~w~~re~~~r~re~a~a~~Rda~~~~~l~k~~ 288 (292)
++||+.|+..|..- +.++.. -+...++|+++|-+=|++|.
T Consensus 46 ~~qme~L~~~R~eT-------e~~R~~-re~~k~~R~~~~~~R~~~ir 85 (88)
T PF13300_consen 46 QEQMEELEELRKET-------EEQRKK-REELKEKREKELEERLKKIR 85 (88)
T ss_pred HHHHHHHHHHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34677777777654 233333 33456778888877777764
No 26
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.42 E-value=2.2e+02 Score=31.68 Aligned_cols=39 Identities=33% Similarity=0.283 Sum_probs=18.3
Q ss_pred HHHHHH--HHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHH
Q 022743 215 QMQMEM--QWREAFEARENERR---IKEMEWRQTMEALENERIM 253 (292)
Q Consensus 215 Q~~m~~--~~~e~~e~re~eR~---~rEe~Wr~~m~~Le~er~~ 253 (292)
|.++++ +-|+.=++||+|+. .|||+=|++=+++|.||-.
T Consensus 326 qaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~ 369 (1118)
T KOG1029|consen 326 QAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKA 369 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555553 34444444444333 3444445555555666543
No 27
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.26 E-value=3.8e+02 Score=25.90 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=10.4
Q ss_pred HhHHHHHHHHHHHHh
Q 022743 274 EKRDALITALLNKLR 288 (292)
Q Consensus 274 ~~Rda~~~~~l~k~~ 288 (292)
+.-|.||..|++.+.
T Consensus 196 eeqdnll~eFv~YIk 210 (299)
T KOG3054|consen 196 EEQDNLLSEFVEYIK 210 (299)
T ss_pred chHHHHHHHHHHHHH
Confidence 345678888887764
No 28
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=36.62 E-value=89 Score=28.08 Aligned_cols=58 Identities=16% Similarity=0.396 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhhhh
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNL-VTRYKG 109 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNL-kk~YKk 109 (292)
|-..||.++=+.|-.+.-+ ....+...-..++.+...|. ||+-.|...|... .+.|..
T Consensus 4 rqdawt~e~d~llae~vl~---~i~eg~tql~afe~~g~~L~-----rt~aac~fRwNs~vrk~Yee 62 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLR---HIREGGTQLKAFEEVGDALK-----RTAAACGFRWNSVVRKQYQE 62 (170)
T ss_pred hhhhhhhHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHh-----hhHHHHHhHHHHHHHHHHHH
Confidence 5567999998888555544 23344456677888887754 7999999999554 446654
No 29
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=32.35 E-value=2e+02 Score=20.97 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhcc
Q 022743 49 SVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKGCE 111 (292)
Q Consensus 49 T~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~YKkiK 111 (292)
+.+++..+|.-...+...+......-..-..++..|...| .-.+..|+.++.+|..+|..+.
T Consensus 32 ~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~-~~~~~~i~~~~~~l~~~w~~l~ 93 (105)
T PF00435_consen 32 DLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSG-PEDSDEIQEKLEELNQRWEALC 93 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 4578888888887777766665555555556777886555 5677999999999999998753
No 30
>PLN03086 PRLI-interacting factor K; Provisional
Probab=31.83 E-value=2.2e+02 Score=30.14 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 022743 247 LENERIMMDRRLRER 261 (292)
Q Consensus 247 Le~er~~~e~~w~~r 261 (292)
||+||-++|.+=+.|
T Consensus 27 ~~~~~~~~~~~~~~~ 41 (567)
T PLN03086 27 LERERKAKEEAAKQR 41 (567)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555443333333
No 31
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=30.31 E-value=1.8e+02 Score=31.24 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=7.8
Q ss_pred HHHHHHHHhhhhc
Q 022743 98 CKWKNLVTRYKGC 110 (292)
Q Consensus 98 ~KwkNLkk~YKki 110 (292)
+-+|||-..|=++
T Consensus 420 tDLKnlFSKyGKV 432 (940)
T KOG4661|consen 420 TDLKNLFSKYGKV 432 (940)
T ss_pred hHHHHHHHHhcce
Confidence 4566666666553
No 32
>PF08994 T4_Gp59_C: T4 gene Gp59 loader of gp41 DNA helicase C-term; InterPro: IPR015086 The Bacteriophage T4 gene 59 helicase assembly protein is required for recombination-dependent DNA replication, which is the predominant mode of DNA replication in the late stage of T4 infection. T4 gene 59 helicase assembly protein accelerates the loading of the T4 gene 41 helicase during DNA synthesis by the T4 replication system in vitro. T4 gene 59 helicase assembly protein binds to both T4 gene 41 helicase and T4 gene 32 single-stranded DNA binding protein, and to single and double-stranded DNA. The C-terminal domain of the T4 gene 59 helicase assembly protein consists of seven alpha-helices with short intervening loops and turns; the surface of the domain contains large regions of exposed hydrophobic residues and clusters of acidic and basic residues. The hydrophobic region on the 'bottom' surface of the domain near the C-terminal helix binds the leading strand DNA, whilst the hydrophobic region on the, top, surface of the domain lies between the two arms of the fork DNA, allowing for T4 gene 41 helicase binding and assembly into a hexameric complex around the lagging strand []. ; PDB: 1C1K_A.
Probab=29.83 E-value=1.6e+02 Score=24.51 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHHhh
Q 022743 51 QETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREK-G-YNRSAEQCKCKWKNLVTRY 107 (292)
Q Consensus 51 eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~-G-y~RTaeQCk~KwkNLkk~Y 107 (292)
=||..+|+-.-..-..|.. ....++|..+|.+|... - ...+..+|+..+....+.+
T Consensus 45 ~ET~vilds~Lg~v~~~Dk-~~~D~iW~~~s~kl~kYr~fl~Id~~kyk~~~~eti~~~ 102 (103)
T PF08994_consen 45 LETFVILDSFLGFVDKFDK-VLTDPIWKNYSTKLKKYRPFLKIDCEKYKKLFIETIKSC 102 (103)
T ss_dssp HHHHHHHHHHH-HHHHHHH-H---HHHHHHHHHHHHHHHHEEE-HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhHHhhhh-hccchhHHHHHHHHHHhcchhhcCHHHHHHHHHHHHHhc
Confidence 3788887755444445544 46679999999998862 2 2478888888877666554
No 33
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=29.81 E-value=25 Score=39.05 Aligned_cols=15 Identities=40% Similarity=0.517 Sum_probs=10.7
Q ss_pred HHHHHHHHhHHHHHH
Q 022743 228 ARENERRIKEMEWRQ 242 (292)
Q Consensus 228 ~re~eR~~rEe~Wr~ 242 (292)
||+.|+.+||+.||.
T Consensus 592 RReaEq~~reerERe 606 (982)
T PF03154_consen 592 RREAEQRAREERERE 606 (982)
T ss_pred Hhhhhccchhhhhhc
Confidence 567777777777773
No 34
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=28.78 E-value=3.1e+02 Score=26.30 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 022743 262 EEQRRMREEARAEKRDALITALLNKLR 288 (292)
Q Consensus 262 e~~~r~re~a~a~~Rda~~~~~l~k~~ 288 (292)
..+.+......+..+..+++..+++++
T Consensus 309 ~~~i~~i~~~~~~~~~~~~~~~~~~~~ 335 (345)
T KOG4282|consen 309 QLEIRSIKAIQASRRGSLIDPAQNTLT 335 (345)
T ss_pred HHHHHHHHHHHhccccCCcCcccccCC
Confidence 333344455555666666666665554
No 35
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=27.83 E-value=4.2e+02 Score=23.96 Aligned_cols=28 Identities=39% Similarity=0.630 Sum_probs=19.6
Q ss_pred HHHHHHHHHHH-HHHhHHHHHHHHHHHHh
Q 022743 261 REEQRRMREEA-RAEKRDALITALLNKLR 288 (292)
Q Consensus 261 re~~~r~re~a-~a~~Rda~~~~~l~k~~ 288 (292)
+|++.|..+++ +.-++.+.|.+|+.+..
T Consensus 162 keeekr~~eE~~~~k~~q~~~~~FF~k~~ 190 (216)
T PF11600_consen 162 KEEEKRKKEEEKRLKKEQARITSFFKKPK 190 (216)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 45666666655 55566899999998754
No 36
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=27.32 E-value=1.3e+02 Score=22.04 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHH---HHHHHHHHHcCCCC-CHHHHHHHH
Q 022743 45 FPQWSVQETKEFLVIRAELDRSFMETKRNKLLW---EVISTRMREKGYNR-SAEQCKCKW 100 (292)
Q Consensus 45 ~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lW---e~IS~kM~e~Gy~R-TaeQCk~Kw 100 (292)
...||.+|-..||.....+. ..-| ..|+..| +-.+ |+.||++-.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G---------~g~~a~pk~I~~~~---~~~~lT~~qV~SH~ 50 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLG---------GPDWATPKRILELM---VVDGLTRDQVASHL 50 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhC---------CCcccchHHHHHHc---CCCCCCHHHHHHHH
Confidence 35799999999999877642 1236 6665544 4455 999998754
No 37
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=27.04 E-value=68 Score=28.21 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHH
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCK 97 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk 97 (292)
+.||++.+..|-.+|.+- .-.-+|+..|. |+.|++..=+
T Consensus 1 M~Wtde~~~~L~~lw~~G-----------~SasqIA~~lg--~vsRnAViGk 39 (162)
T PF07750_consen 1 MSWTDERVERLRKLWAEG-----------LSASQIARQLG--GVSRNAVIGK 39 (162)
T ss_pred CCCCHHHHHHHHHHHHcC-----------CCHHHHHHHhC--Ccchhhhhhh
Confidence 479999999999999883 33445776665 5777766543
No 38
>PF14920 MTBP_C: MDM2-binding
Probab=25.63 E-value=1.6e+02 Score=27.96 Aligned_cols=57 Identities=16% Similarity=0.371 Sum_probs=43.6
Q ss_pred chhhHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHhhhh-cccCCCcccCCCCCChHhHHHHhcCc
Q 022743 71 KRNKLLWEVISTRMREKGYNRS---AEQCKCKWKNLVTRYKG-CETTEPEAMRQQFPFYNELQAIFASR 135 (292)
Q Consensus 71 krn~~lWe~IS~kM~e~Gy~RT---aeQCk~KwkNLkk~YKk-iK~~~~~~gr~~wpfFdeLD~Ilg~~ 135 (292)
+.+..+|+.|++.|..+|+..+ -.-|-.++=++.+.|-+ +|+.. --|++|-.+-...
T Consensus 186 KHtR~LkeVVa~tLk~hgI~e~H~cF~aCSqRLFeISKfyLKDLKTSR--------GL~eEMKKtA~~N 246 (251)
T PF14920_consen 186 KHTRMLKEVVAETLKKHGITEAHECFKACSQRLFEISKFYLKDLKTSR--------GLFEEMKKTANNN 246 (251)
T ss_pred HHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhhhcc--------cHHHHHHHHHhcC
Confidence 5778999999999999999753 46788899999998865 44432 2678888775543
No 39
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=25.48 E-value=8.4e+02 Score=26.04 Aligned_cols=20 Identities=15% Similarity=-0.007 Sum_probs=11.8
Q ss_pred CCCChHhHHHHhcCccccch
Q 022743 121 QFPFYNELQAIFASRMQRML 140 (292)
Q Consensus 121 ~wpfFdeLD~Ilg~~~~~~l 140 (292)
.|.+-++|..=.+...+-.+
T Consensus 66 ~~~~e~e~~~~~~~~sq~~l 85 (591)
T KOG2412|consen 66 MHVSEDEMESDEGEESQDEL 85 (591)
T ss_pred chhHHHHHHhcccccccCcc
Confidence 56666777766655544433
No 40
>PTZ00332 paraflagellar rod protein; Provisional
Probab=25.16 E-value=6e+02 Score=26.87 Aligned_cols=77 Identities=26% Similarity=0.333 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHH------HhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 022743 208 LEEFMKQQMQMEMQWREAFEAREN--------ERR------IKEMEWRQTMEALENE--RIMMDRRLREREEQRRMREEA 271 (292)
Q Consensus 208 ~~~~m~~Q~~m~~~~~e~~e~re~--------eR~------~rEe~Wr~~m~~Le~e--r~~~e~~w~~re~~~r~re~a 271 (292)
=.+++.-|+.|++.=+|+.+.+-. |++ .-|+.|++ |..||++ ++..++ -.|-.+|.++..
T Consensus 277 E~Dl~~i~d~iq~~~~eDa~~~KRy~a~k~~Se~f~~~N~e~Qe~~wnr-I~eLer~Lq~l~~eR---~~eV~rRIe~~~ 352 (589)
T PTZ00332 277 ETDLKHIHDAIQKADLEDAEAMKRYATNKEKSERFIRENEDRQEEAWNK-IQDLERQLQRLGTER---FEEVKRRIEEND 352 (589)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 345566677777766665554432 333 34678986 4455554 333332 248889999999
Q ss_pred HHHhHHHHHHHHHHHHh
Q 022743 272 RAEKRDALITALLNKLR 288 (292)
Q Consensus 272 ~a~~Rda~~~~~l~k~~ 288 (292)
+.+.|-..-.+||+=..
T Consensus 353 rEekRr~~yeqFl~~as 369 (589)
T PTZ00332 353 REEKRRVEYQQFLEVAG 369 (589)
T ss_pred HHHHhHhHHHHHHHHHH
Confidence 99999999999987543
No 41
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=23.99 E-value=2e+02 Score=29.48 Aligned_cols=46 Identities=20% Similarity=0.390 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKN 102 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkN 102 (292)
--+.||-+|-.+||..-... .-.-|+.||..+- .+|.+.|++=+.+
T Consensus 71 ~~~~WtadEEilLLea~~t~---------G~GNW~dIA~hIG----tKtkeeck~hy~k 116 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAETY---------GFGNWQDIADHIG----TKTKEECKEHYLK 116 (438)
T ss_pred CCCCCChHHHHHHHHHHHHh---------CCCcHHHHHHHHc----ccchHHHHHHHHH
Confidence 34799999999999866542 1245999999875 7999999987653
No 42
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=23.45 E-value=2.2e+02 Score=27.33 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=21.9
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022743 237 EMEWR-QTMEALENERIMMDRRLREREEQRRMR 268 (292)
Q Consensus 237 Ee~Wr-~~m~~Le~er~~~e~~w~~re~~~r~r 268 (292)
=++|+ +.+.+|-++|..+++.=.|+++.-|.|
T Consensus 117 yeaWKlRELkRiKRDRe~~e~~EkEkeEiERrR 149 (276)
T PF06991_consen 117 YEAWKLRELKRIKRDREEREAREKEKEEIERRR 149 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46798 468888888887776556665555554
No 43
>PRK07217 replication factor A; Reviewed
Probab=22.45 E-value=1.2e+02 Score=29.77 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 022743 75 LLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYK 108 (292)
Q Consensus 75 ~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~YK 108 (292)
..=+.|+.++..+|...+....+.++.+|...|+
T Consensus 6 ~~aeei~~~~s~lgvdv~~~~ie~~L~~Lv~ey~ 39 (311)
T PRK07217 6 QHAEEIHEQFSDLGVDVSVEDVEERLDTLVTEFK 39 (311)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence 3457799999999999999999999999998886
No 44
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=22.34 E-value=2.6e+02 Score=21.66 Aligned_cols=36 Identities=14% Similarity=0.349 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHh
Q 022743 201 SHNFKEILEEFMKQQMQ--MEM---QWREAFEARENERRIK 236 (292)
Q Consensus 201 ~~~~~~~~~~~m~~Q~~--m~~---~~~e~~e~re~eR~~r 236 (292)
...++++|+++++=.-+ ++. .+.|.+.+.|-+|.+|
T Consensus 32 ~~TlE~lvremLRPmLkeWLD~nLP~lVErlVr~EIeRi~r 72 (73)
T PF10691_consen 32 GRTLEDLVREMLRPMLKEWLDENLPGLVERLVREEIERIAR 72 (73)
T ss_pred cccHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhc
Confidence 45789999988865443 222 3334555666665543
No 45
>PF14420 Clr5: Clr5 domain
Probab=22.34 E-value=1.3e+02 Score=21.42 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=22.4
Q ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHH
Q 022743 75 LLWEVISTRMR-EKGYNRSAEQCKCKWK 101 (292)
Q Consensus 75 ~lWe~IS~kM~-e~Gy~RTaeQCk~Kwk 101 (292)
..-+.|...|. ++||.-|..|.+.+|+
T Consensus 21 ~tl~~v~~~M~~~~~F~at~rqy~~r~~ 48 (54)
T PF14420_consen 21 KTLEEVMEIMKEEHGFKATKRQYKRRFK 48 (54)
T ss_pred CcHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 34477999996 5799999999999887
No 46
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=21.98 E-value=6.3e+02 Score=28.74 Aligned_cols=16 Identities=25% Similarity=0.194 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhHHHH
Q 022743 225 AFEARENERRIKEMEW 240 (292)
Q Consensus 225 ~~e~re~eR~~rEe~W 240 (292)
++++..+.+...|++=
T Consensus 822 a~~~~~~Aq~e~e~er 837 (1018)
T KOG2002|consen 822 ALEHVAQAQEEDEEER 837 (1018)
T ss_pred HHHHHHHHhHHHHHHH
Confidence 3444444444444433
Done!