Query 022743
Match_columns 292
No_of_seqs 216 out of 523
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 10:23:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.9 2.3E-25 7.9E-30 173.0 9.1 85 43-127 2-86 (86)
2 3sjm_A Telomeric repeat-bindin 97.7 4.9E-05 1.7E-09 55.9 5.2 50 44-105 10-60 (64)
3 1w0t_A Telomeric repeat bindin 97.6 0.00011 3.6E-09 51.6 5.9 48 46-105 3-51 (53)
4 2din_A Cell division cycle 5-l 97.5 0.00048 1.7E-08 50.1 8.1 55 40-109 4-58 (66)
5 1ity_A TRF1; helix-turn-helix, 97.4 0.0003 1E-08 51.8 6.4 53 42-106 7-60 (69)
6 2cqq_A RSGI RUH-037, DNAJ homo 97.3 0.0013 4.4E-08 49.5 8.4 52 44-106 7-58 (72)
7 2juh_A Telomere binding protei 97.2 0.0029 9.9E-08 52.2 10.1 60 38-106 10-69 (121)
8 1guu_A C-MYB, MYB proto-oncoge 97.1 0.00064 2.2E-08 47.1 4.4 46 46-104 4-49 (52)
9 2llk_A Cyclin-D-binding MYB-li 97.0 0.00071 2.4E-08 51.1 4.8 54 38-106 16-69 (73)
10 2d9a_A B-MYB, MYB-related prot 97.0 0.0015 5.1E-08 46.6 6.0 51 41-104 4-54 (60)
11 1x41_A Transcriptional adaptor 96.9 0.0022 7.4E-08 46.0 6.4 47 44-103 7-53 (60)
12 2dim_A Cell division cycle 5-l 96.9 0.0014 4.9E-08 48.1 5.4 50 41-103 5-54 (70)
13 2elk_A SPCC24B10.08C protein; 96.8 0.0044 1.5E-07 44.2 7.4 46 46-103 10-55 (58)
14 1gvd_A MYB proto-oncogene prot 96.7 0.0017 5.8E-08 45.0 4.1 45 46-103 4-48 (52)
15 2roh_A RTBP1, telomere binding 96.7 0.005 1.7E-07 50.9 7.5 53 44-106 30-83 (122)
16 2yum_A ZZZ3 protein, zinc fing 96.6 0.0068 2.3E-07 44.9 7.5 56 41-104 4-59 (75)
17 2yus_A SWI/SNF-related matrix- 96.6 0.0024 8.3E-08 48.7 5.0 46 44-103 17-62 (79)
18 2cu7_A KIAA1915 protein; nucle 96.6 0.0046 1.6E-07 45.8 6.4 52 41-106 5-56 (72)
19 2ckx_A NGTRF1, telomere bindin 96.6 0.0039 1.3E-07 48.1 5.8 50 47-105 2-51 (83)
20 2k9n_A MYB24; R2R3 domain, DNA 96.5 0.007 2.4E-07 47.8 7.1 51 43-107 51-101 (107)
21 2cjj_A Radialis; plant develop 96.5 0.0037 1.3E-07 49.2 5.4 56 45-110 8-63 (93)
22 2ltp_A Nuclear receptor corepr 95.5 0.00048 1.6E-08 53.5 0.0 61 33-107 4-64 (89)
23 2cqr_A RSGI RUH-043, DNAJ homo 96.3 0.0035 1.2E-07 47.3 4.3 51 45-105 18-68 (73)
24 3osg_A MYB21; transcription-DN 96.3 0.0042 1.4E-07 50.5 4.9 50 44-107 61-110 (126)
25 2aje_A Telomere repeat-binding 96.2 0.0046 1.6E-07 49.7 4.4 55 42-106 10-65 (105)
26 1gv2_A C-MYB, MYB proto-oncoge 96.0 0.0064 2.2E-07 47.6 4.3 51 41-105 52-102 (105)
27 2k9n_A MYB24; R2R3 domain, DNA 95.5 0.015 5.1E-07 45.9 4.6 45 46-103 2-46 (107)
28 3osg_A MYB21; transcription-DN 95.4 0.018 6.1E-07 46.8 4.9 47 44-104 10-56 (126)
29 1h8a_C AMV V-MYB, MYB transfor 95.3 0.016 5.6E-07 46.9 4.4 47 44-103 26-72 (128)
30 1gv2_A C-MYB, MYB proto-oncoge 95.1 0.015 5.1E-07 45.4 3.5 45 46-103 5-49 (105)
31 1h8a_C AMV V-MYB, MYB transfor 95.0 0.011 3.8E-07 47.9 2.7 51 41-105 75-125 (128)
32 3zqc_A MYB3; transcription-DNA 95.0 0.014 4.8E-07 47.6 3.4 49 44-106 53-101 (131)
33 1x58_A Hypothetical protein 49 94.7 0.093 3.2E-06 38.5 6.6 50 44-106 7-58 (62)
34 1h89_C C-MYB, MYB proto-oncoge 94.0 0.047 1.6E-06 45.7 4.2 49 42-103 55-103 (159)
35 1h89_C C-MYB, MYB proto-oncoge 93.7 0.033 1.1E-06 46.6 2.8 51 41-105 106-156 (159)
36 1wgx_A KIAA1903 protein; MYB D 93.4 0.098 3.4E-06 39.5 4.6 53 45-107 8-60 (73)
37 1ug2_A 2610100B20RIK gene prod 92.8 0.45 1.5E-05 37.5 7.7 61 40-111 28-88 (95)
38 3hm5_A DNA methyltransferase 1 92.0 0.2 6.9E-06 39.4 4.9 56 46-111 31-87 (93)
39 3zqc_A MYB3; transcription-DNA 91.8 0.053 1.8E-06 44.1 1.4 46 46-104 3-48 (131)
40 2lr8_A CAsp8-associated protei 89.7 0.054 1.9E-06 40.6 0.0 58 42-111 11-68 (70)
41 1ign_A Protein (RAP1); RAP1,ye 89.3 0.24 8.2E-06 45.3 3.5 51 46-105 9-60 (246)
42 2iw5_B Protein corest, REST co 88.2 0.5 1.7E-05 42.9 4.8 45 44-102 132-176 (235)
43 2eqr_A N-COR1, N-COR, nuclear 87.5 0.92 3.2E-05 32.3 5.0 45 42-100 9-53 (61)
44 4iej_A DNA methyltransferase 1 76.2 3.9 0.00013 32.1 4.9 56 46-111 31-87 (93)
45 2xag_B REST corepressor 1; ami 74.6 3.4 0.00012 41.1 5.2 43 44-100 379-421 (482)
46 2yqk_A Arginine-glutamic acid 63.5 15 0.00052 26.0 5.5 44 41-97 5-48 (63)
47 1fex_A TRF2-interacting telome 51.9 17 0.00057 25.7 3.9 53 46-102 3-55 (59)
48 4eef_G F-HB80.4, designed hema 51.3 0.85 2.9E-05 34.5 -3.1 47 43-99 18-64 (74)
49 2c9l_Y EB1, zebra, BZLF1 trans 34.0 24 0.00081 25.3 2.3 19 92-110 12-30 (63)
50 1wlx_A Alpha-actinin 4; three- 29.0 1.7E+02 0.0059 23.8 7.1 60 48-107 42-114 (129)
51 4a69_C Nuclear receptor corepr 28.0 38 0.0013 26.0 2.8 39 45-97 43-81 (94)
52 2crg_A Metastasis associated p 27.9 53 0.0018 23.7 3.4 44 42-98 5-48 (70)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.92 E-value=2.3e-25 Score=173.02 Aligned_cols=85 Identities=35% Similarity=0.734 Sum_probs=80.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhcccCCCcccCCCC
Q 022743 43 DRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKGCETTEPEAMRQQF 122 (292)
Q Consensus 43 ~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~YKkiK~~~~~~gr~~w 122 (292)
.|.+.||++||++||.||++++..|..++++..+|+.||..|.++||.|||.||+.||+||++.|+++++++..+|+.+|
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG~~~~ 81 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHHDRGNGSAKM 81 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSCCCCCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999988776777799
Q ss_pred CChHh
Q 022743 123 PFYNE 127 (292)
Q Consensus 123 pfFde 127 (292)
|||++
T Consensus 82 ~yf~e 86 (86)
T 2ebi_A 82 SYYKE 86 (86)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 99985
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.70 E-value=4.9e-05 Score=55.86 Aligned_cols=50 Identities=24% Similarity=0.441 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGY-NRSAEQCKCKWKNLVT 105 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy-~RTaeQCk~KwkNLkk 105 (292)
+...||.+|-..|+.+...+. . .-|..||..+ +| .||+.||+++|.||.+
T Consensus 10 kk~~WT~eED~~L~~~V~~~G----~-----~~W~~Ia~~~---~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYG----E-----GNWAAISKNY---PFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHC----T-----TCHHHHHHHS---CCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccC----C-----CchHHHHhhc---CCCCCCHHHHHHHHHHHhc
Confidence 345799999999999876541 1 2499998653 44 5999999999999875
No 3
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.62 E-value=0.00011 Score=51.56 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGY-NRSAEQCKCKWKNLVT 105 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy-~RTaeQCk~KwkNLkk 105 (292)
..||.+|...|+.+..... ..-|..||..| +| .||+.||+++|.||.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G---------~~~W~~Ia~~~---~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYG---------EGNWSKILLHY---KFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHC---------TTCHHHHHHHS---CCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHc---CCCCCCHHHHHHHHHHHHc
Confidence 4799999999999877641 13599999886 56 4999999999999875
No 4
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=0.00048 Score=50.15 Aligned_cols=55 Identities=24% Similarity=0.494 Sum_probs=42.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhh
Q 022743 40 DTSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKG 109 (292)
Q Consensus 40 ~~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~YKk 109 (292)
+|.-....||.+|-..||.+.... +.-|..||. |. | ||+.||++.|.++...-.+
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~----------g~~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLM----------PTQWRTIAP-II--G--RTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHC----------TTCHHHHHH-HH--S--SCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHc----------CCCHHHHhc-cc--C--cCHHHHHHHHHHHhChHhc
Confidence 344455689999999999985542 126999999 64 5 9999999999998765443
No 5
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.43 E-value=0.0003 Score=51.78 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=42.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHh
Q 022743 42 SDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGY-NRSAEQCKCKWKNLVTR 106 (292)
Q Consensus 42 ~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy-~RTaeQCk~KwkNLkk~ 106 (292)
......||.+|-..||.+...+. ..-|..||..| +| .||+.||+.+|.|+.+.
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G---------~~~W~~Ia~~~---~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYG---------EGNWSKILLHY---KFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHC---------SSCHHHHHHHS---CCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC---------CCcHHHHHHHc---CcCCCCHHHHHHHHHHHcCC
Confidence 44457899999999999877641 13599999876 46 79999999999998753
No 6
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.28 E-value=0.0013 Score=49.46 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTR 106 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~ 106 (292)
....||.+|-..|+.+.. .|..... .-|+.||..| | ||+.+|+.+|+.|...
T Consensus 7 ~~~~WT~eE~k~fe~al~----~~p~~t~--~RW~~IA~~l---g--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMV----KFPGGTP--GRWEKIAHEL---G--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHH----HSCTTCT--THHHHHHHHH---T--SCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHH----HCCCCCC--cHHHHHHHHh---C--CCHHHHHHHHHHHHHh
Confidence 346799999999998875 3443222 4599999997 4 9999999999999765
No 7
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.16 E-value=0.0029 Score=52.18 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 022743 38 NVDTSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTR 106 (292)
Q Consensus 38 ~~~~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~ 106 (292)
...+......||.+|..+|+.....+. ..-|..|+..+...--.||+.+|++||.||.+.
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G---------~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLG---------TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHG---------GGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHC---------CCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 334445567999999999999877642 136999987764311269999999999999874
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.05 E-value=0.00064 Score=47.10 Aligned_cols=46 Identities=22% Similarity=0.598 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLV 104 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLk 104 (292)
..||.+|-..|+.+...+. ..-|..||..|. .||+.||+.+|.++.
T Consensus 4 ~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNG---------TDDWKVIANYLP----NRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHC---------SSCHHHHHHTST----TCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 5799999999999887641 125999999874 599999999999864
No 9
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.03 E-value=0.00071 Score=51.11 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=42.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 022743 38 NVDTSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTR 106 (292)
Q Consensus 38 ~~~~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~ 106 (292)
..+|.-....||.+|-..||.+...+. .-|..||..| .||+.||++.|..|+..
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G----------~kW~~IA~~l-----gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHG----------NDWATIGAAL-----GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHS----------SCHHHHHHHH-----TSCHHHHHHHHHHCSCC
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHC----------CCHHHHHHHh-----CCCHHHHHHHHHHHHHH
Confidence 346666678999999999999887642 2299999998 49999999999988653
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=96.98 E-value=0.0015 Score=46.56 Aligned_cols=51 Identities=18% Similarity=0.564 Sum_probs=39.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 022743 41 TSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLV 104 (292)
Q Consensus 41 ~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLk 104 (292)
|.-....||.+|-..|+.+...+. ..-|..||..|. .||+.||+.+|.++.
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFG---------QQDWKFLASHFP----NRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTC---------TTCHHHHHHHCS----SSCHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHcc----CCCHHHHHHHHHHHc
Confidence 344556899999999999887641 135999999973 499999999998753
No 11
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.93 E-value=0.0022 Score=45.99 Aligned_cols=47 Identities=19% Similarity=0.420 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNL 103 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNL 103 (292)
....||.+|-..||.+...+. ..-|..||..|. .||+.||+..|.++
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCG---------FGNWQDVANQMC----TKTKEECEKHYMKY 53 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTC---------TTCHHHHHHHHT----TSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHC---------cCcHHHHHHHhC----CCCHHHHHHHHHHH
Confidence 346799999999999876532 135999999983 39999999999875
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.89 E-value=0.0014 Score=48.12 Aligned_cols=50 Identities=24% Similarity=0.470 Sum_probs=39.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 022743 41 TSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNL 103 (292)
Q Consensus 41 ~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNL 103 (292)
+.-+...||.+|-..|+.+...+. ..-|..||..|. .||+.||+.+|.|.
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYG---------KNQWSRIASLLH----RKSAKQCKARWYEW 54 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTC---------SSCHHHHHHHST----TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHhc----CCCHHHHHHHHHHH
Confidence 344557899999999999877641 135999999975 69999999999874
No 13
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=96.84 E-value=0.0044 Score=44.19 Aligned_cols=46 Identities=17% Similarity=0.331 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNL 103 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNL 103 (292)
..||.+|-..||.+..... ..-|..||..|. -.||+.||+.+|.++
T Consensus 10 ~~WT~eED~~L~~~v~~~G---------~~~W~~IA~~~~---~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 10 ENWGADEELLLIDACETLG---------LGNWADIADYVG---NARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTT---------TTCHHHHHHHHC---SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHHC---CCCCHHHHHHHHHHH
Confidence 4699999999999876641 146999998873 369999999999875
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=96.67 E-value=0.0017 Score=44.96 Aligned_cols=45 Identities=22% Similarity=0.644 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNL 103 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNL 103 (292)
..||.+|-..|+.+..... ..-|..||..|. .||+.||+.+|.|.
T Consensus 4 ~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYG---------PKRWSVIAKHLK----GRIGKQCRERWHNH 48 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHC---------TTCHHHHHTTST----TCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC---------cChHHHHHHHcC----CCCHHHHHHHHHHH
Confidence 5799999999999876631 124999998863 59999999999874
No 15
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=96.67 E-value=0.005 Score=50.86 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHh
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGY-NRSAEQCKCKWKNLVTR 106 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy-~RTaeQCk~KwkNLkk~ 106 (292)
....||.+|..+|+.....+. ..-|..|+..+.. .| .||+.+|++||.||.+.
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G---------~g~W~~I~~~~~~-~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLG---------TGRWRDVKFRAFE-NVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHS---------SSCHHHHHHHHHS-SSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHC---------CCChHHHHHHhcc-ccCCCCHHHHHHHHHHHHhh
Confidence 346999999999999887642 1369999886532 22 59999999999999864
No 16
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.63 E-value=0.0068 Score=44.94 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=41.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 022743 41 TSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLV 104 (292)
Q Consensus 41 ~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLk 104 (292)
|.-....||.+|-..|+.+...+. .......-|..||..|. .||+.||+..|.++.
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g----~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYP----PEEVESRRWQKIADELG----NRTAKQVASQVQKYF 59 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSC----CCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 344456899999999999876532 11122367999999984 499999999997544
No 17
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=96.63 E-value=0.0024 Score=48.65 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNL 103 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNL 103 (292)
....||.+|...||.+...+. .-|..||..|. .||+.||+..|.+|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G----------~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK----------DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS----------SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC----------CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 456899999999999876532 35999999874 49999999999875
No 18
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.62 E-value=0.0046 Score=45.76 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=41.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 022743 41 TSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTR 106 (292)
Q Consensus 41 ~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~ 106 (292)
|.-....||.+|-..||.+...+. .-|..||..|. .||+.||++.|.++.+.
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G----------~~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFG----------RRWTKISKLIG----SRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTC----------SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 344556899999999999887642 26999999773 49999999999987654
No 19
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.55 E-value=0.0039 Score=48.06 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 022743 47 QWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVT 105 (292)
Q Consensus 47 ~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk 105 (292)
.||.+|..+|+.....+. ..-|..|+..-...=-.||+.+|++||.||.+
T Consensus 2 ~WT~eEd~~L~~gv~k~G---------~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLG---------TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCHHHHHHHHHHHHHHC---------SSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC---------CCCcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 699999999999877642 12599998752110025999999999999986
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.50 E-value=0.007 Score=47.80 Aligned_cols=51 Identities=25% Similarity=0.369 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 022743 43 DRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRY 107 (292)
Q Consensus 43 ~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~Y 107 (292)
-....||.+|-..||.+...+. .-|..||..|. .||+.||+++|.+|.+.-
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYG----------PKWNKISKFLK----NRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTC----------SCHHHHHHHHS----SSCHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhC----------cCHHHHHHHCC----CCCHHHHHHHHHHHHhhH
Confidence 3456899999999999887642 25999999873 599999999999998753
No 21
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.49 E-value=0.0037 Score=49.24 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhc
Q 022743 45 FPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKGC 110 (292)
Q Consensus 45 ~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~YKki 110 (292)
...||.+|-..|+.+...+. .. ...-|..||..|- .||+.||+..|.+|...-+.+
T Consensus 8 ~~~WT~eEd~~L~~al~~~~----~~--~~~rW~~IA~~vp----GRT~~q~k~ry~~l~~dv~~i 63 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYD----KD--TPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYI 63 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSC----TT--CTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC----CC--CCchHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHh
Confidence 35799999999988766432 11 2357999999874 399999999999998765444
No 22
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.45 E-value=0.00048 Score=53.47 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=46.6
Q ss_pred CCcccCCCCCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 022743 33 PHISVNVDTSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRY 107 (292)
Q Consensus 33 ~~~s~~~~~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~Y 107 (292)
+..+...++.-....||.+|-..||.+...+. .-|..||..|. .||+.||++.|.++.+.+
T Consensus 4 ~~~~~~~~p~~~~~~WT~eEd~~l~~~~~~~G----------~~W~~IA~~l~----gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 4 HHHHSSGRENLYFQGWTEEEMGTAKKGLLEHG----------RNWSAIARMVG----SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 33444555666677899999999999887641 24999999874 499999999999876654
No 23
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.35 E-value=0.0035 Score=47.26 Aligned_cols=51 Identities=22% Similarity=0.424 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 022743 45 FPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVT 105 (292)
Q Consensus 45 ~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk 105 (292)
...||.+|-..|+.+...+.. -...-|..||..|- .||+.||+..|.+|..
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~------~~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPR------GSSDCWDKIARCVP----SKSKEDCIARYKLLVS 68 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCS------SSHHHHHHHGGGCS----SSCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCC------CCCchHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 468999999999988765321 12367999998874 4999999999999864
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.31 E-value=0.0042 Score=50.55 Aligned_cols=50 Identities=16% Similarity=0.407 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRY 107 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~Y 107 (292)
....||.+|-..||.+...+. .-|..||..|. .||+.||+++|.+|.+.+
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYG----------RQWAIIAKFFP----GRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC----------SCHHHHHTTST----TCCHHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHHhc
Confidence 445799999999999887752 23999997653 599999999999998764
No 25
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.16 E-value=0.0046 Score=49.74 Aligned_cols=55 Identities=24% Similarity=0.267 Sum_probs=40.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHh
Q 022743 42 SDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKG-YNRSAEQCKCKWKNLVTR 106 (292)
Q Consensus 42 ~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~G-y~RTaeQCk~KwkNLkk~ 106 (292)
......||.+|+.+|+.....+. . .-|..|+..+.. - -.||+.+|++||.||.+.
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G----~-----g~W~~I~~~~~~-~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLG----T-----GRWRDVKLCAFE-DADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHC----S-----SSHHHHHSSSSS-STTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC----C-----CChHHHHHHhcc-ccCCCCHHHHHHHHHHHHhh
Confidence 44457899999999999877641 1 259988764311 1 259999999999999864
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.98 E-value=0.0064 Score=47.56 Aligned_cols=51 Identities=16% Similarity=0.364 Sum_probs=40.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 022743 41 TSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVT 105 (292)
Q Consensus 41 ~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk 105 (292)
|.-....||.+|-..||.+...+. .-|..||..|. .||+.||+++|.+|.+
T Consensus 52 p~~~~~~Wt~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 52 PEVKKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHS----------SCHHHHHTTCT----TCCHHHHHHHHHHHTC
T ss_pred CcccccCCCHHHHHHHHHHHHHhC----------CCHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 333456899999999999877642 35999997642 4999999999998865
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=95.47 E-value=0.015 Score=45.87 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNL 103 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNL 103 (292)
..||.+|-..|+.+...+. ..-|..||..|. .||+.||+.+|.|.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYG---------AKDWIRISQLMI----TRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHC---------SSCHHHHHHHTT----TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC---------CCCHHHHhhhcC----CCCHHHHHHHHHHH
Confidence 3699999999999887642 135999999874 59999999999874
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=95.36 E-value=0.018 Score=46.77 Aligned_cols=47 Identities=26% Similarity=0.530 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLV 104 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLk 104 (292)
+...||.+|-..|+.+...+. .-|..||..|. .||+.||+.+|.|..
T Consensus 10 kk~~WT~eED~~L~~~v~~~G----------~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHG----------SDWKMIAATFP----NRNARQCRDRWKNYL 56 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHT----------TCHHHHHHTCT----TCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhC----------CCHHHHHHHcC----CCCHHHHHHHHhhhc
Confidence 446799999999999887641 14999998763 599999999999743
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.30 E-value=0.016 Score=46.92 Aligned_cols=47 Identities=19% Similarity=0.499 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNL 103 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNL 103 (292)
....||.+|...|+.+...+.. .-|..||..|. .||+.||+.+|.++
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~---------~~W~~Ia~~l~----~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGP---------KRWSDIAKHLK----GRIGKQCRERWHNH 72 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCS---------CCHHHHHHHSS----SCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCC---------CCHHHHHHHhc----CCcHHHHHHHHHHh
Confidence 4467999999999998766421 24999999873 59999999999874
No 30
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.09 E-value=0.015 Score=45.43 Aligned_cols=45 Identities=22% Similarity=0.628 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNL 103 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNL 103 (292)
..||.+|...|+.+...+.. .-|..||..|. .||+.||+.+|.+.
T Consensus 5 ~~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~l~----~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGP---------KRWSVIAKHLK----GRIGKQCRERWHNH 49 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCT---------TCHHHHHTTST----TCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCC---------CcHHHHhhhhc----CCCHHHHHHHHHhc
Confidence 47999999999998865421 24999998763 59999999999874
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.05 E-value=0.011 Score=47.89 Aligned_cols=51 Identities=16% Similarity=0.371 Sum_probs=40.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 022743 41 TSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVT 105 (292)
Q Consensus 41 ~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk 105 (292)
|.-....||.+|-..||.+...+. .-|..||..|. .||+.+|+++|.+|.+
T Consensus 75 p~~~~~~WT~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 75 PEVKKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAVKNHWNSTMR 125 (128)
T ss_dssp SSSCCSCCCHHHHHHHHHHHHHHC----------SCHHHHGGGST----TCCHHHHHHHHHTTTT
T ss_pred cccccccCCHHHHHHHHHHHHHHC----------cCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 334456899999999999887642 35999997642 5999999999998764
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.04 E-value=0.014 Score=47.60 Aligned_cols=49 Identities=18% Similarity=0.433 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTR 106 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~ 106 (292)
....||.+|-..||.+...+. .-|..||..|. .||+.||+++|.++.+.
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLG----------SKWSVIAKLIP----GRTDNAIKNRWNSSISK 101 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSC----------SCHHHHTTTST----TCCHHHHHHHHHHTTGG
T ss_pred cCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 345799999999999887642 23999987653 59999999999987654
No 33
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=94.71 E-value=0.093 Score=38.51 Aligned_cols=50 Identities=14% Similarity=0.184 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHh
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGY--NRSAEQCKCKWKNLVTR 106 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy--~RTaeQCk~KwkNLkk~ 106 (292)
....||.+|+..||.....+. .-|..|+.. .-| .||....++||.||.+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G----------~~W~~I~~~---y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMG----------NHWNSILWS---FPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHC----------SCHHHHHHH---SCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHh----------HhHHHHHHh---CCCccCcccchHHHHHHHHHhc
Confidence 346899999999999877752 358888654 223 69999999999999863
No 34
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=93.98 E-value=0.047 Score=45.70 Aligned_cols=49 Identities=20% Similarity=0.519 Sum_probs=38.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 022743 42 SDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNL 103 (292)
Q Consensus 42 ~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNL 103 (292)
.-....||.+|-..||.+...+. . .-|..||..|. .||+.||+.+|.++
T Consensus 55 ~~~~~~Wt~eEd~~L~~~v~~~g-----~----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 55 ELIKGPWTKEEDQRVIKLVQKYG-----P----KRWSVIAKHLK----GRIGKQCRERWHNH 103 (159)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHHC-----S----CCHHHHHHTST----TCCHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHHHHhC-----c----ccHHHHHHHcC----CCCHHHHHHHHHHH
Confidence 33456899999999999876531 1 24999998763 59999999999874
No 35
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=93.68 E-value=0.033 Score=46.60 Aligned_cols=51 Identities=16% Similarity=0.364 Sum_probs=40.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 022743 41 TSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVT 105 (292)
Q Consensus 41 ~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk 105 (292)
|.-....||.+|-..||.+...+. .-|..||..|. .||+.+|+++|..|.+
T Consensus 106 p~~~~~~WT~eEd~~L~~~~~~~g----------~~W~~Ia~~l~----gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 106 PEVKKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAIKNHWNSTMR 156 (159)
T ss_dssp TTSCCSCCCHHHHHHHHHHHHHHC----------SCHHHHHTTST----TCCHHHHHHHHHTTTC
T ss_pred ccccccCCChHHHHHHHHHHHHHC----------CCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 444557899999999999887642 35999997642 4999999999998754
No 36
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=93.38 E-value=0.098 Score=39.45 Aligned_cols=53 Identities=19% Similarity=0.346 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 022743 45 FPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRY 107 (292)
Q Consensus 45 ~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~Y 107 (292)
...||.+|.++|....... ... ...-|+.||..+-- ||+++|+.+++.|...+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~----~~~--tp~rWe~IA~~V~g----KT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASL----PKH--KPGFWSEVAAAVGS----RSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHS----CSS--SSSHHHHHHHHTTT----SCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHC----CCC--CccHHHHHHHHcCC----CCHHHHHHHHHHHHhcc
Confidence 3579999999998876543 211 23579999987642 99999999999885443
No 37
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=92.75 E-value=0.45 Score=37.51 Aligned_cols=61 Identities=13% Similarity=0.339 Sum_probs=49.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhcc
Q 022743 40 DTSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKGCE 111 (292)
Q Consensus 40 ~~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~YKkiK 111 (292)
.+++...-||+++=+.+|..... .......|-.||..|.. ||+.|.+++|..|.+.|.+..
T Consensus 28 s~Ge~VvlWTRe~DR~IL~~cQ~-------~G~s~~tFa~iA~~L~N----ks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 28 STGEKVVLWTREADRVILTMCQE-------QGAQPHTFSVISQQLGN----KTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHH-------TTSCTTTHHHHHHHHSS----CCHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEeccccCHHHHHHHHh-------cCCChhHHHHHHHHHcc----CCHHHHHHHHHHHHHHHHHHh
Confidence 34667789999999888875544 34556789999999864 899999999999999999754
No 38
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=92.03 E-value=0.2 Score=39.42 Aligned_cols=56 Identities=20% Similarity=0.419 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhhhhcc
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGY-NRSAEQCKCKWKNLVTRYKGCE 111 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy-~RTaeQCk~KwkNLkk~YKkiK 111 (292)
..||.+||..|+.+....+.. |-.|+..+.-.++ .||.+..|+++-.+.+.....+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlR----------W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLR----------FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC----------HHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCC----------eeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 679999999999999887644 6668888875554 6999999999999988777654
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=91.76 E-value=0.053 Score=44.14 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLV 104 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLk 104 (292)
..||.+|-..|+.+..... ..-|..||..|. .||+.||+.+|.|..
T Consensus 3 g~Wt~eED~~L~~~v~~~g---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENG---------PQNWPRITSFLP----NRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHC---------SCCGGGGTTSCT----TSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhC---------cCCHHHHHHHHC----CCCHHHHHHHHhhcc
Confidence 3699999999998876641 124999988763 599999999998743
No 40
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=89.68 E-value=0.054 Score=40.59 Aligned_cols=58 Identities=7% Similarity=0.298 Sum_probs=46.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhcc
Q 022743 42 SDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKGCE 111 (292)
Q Consensus 42 ~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkNLkk~YKkiK 111 (292)
++....||.++=+.+|..... .+.....|..||..| +||+.|..++|..|.+-|.+.|
T Consensus 11 ge~vvlWTReeDR~IL~~cq~-------~G~s~~tfa~iA~~L-----nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 11 GEIIILWTRNDDRVILLECQK-------RGPSSKTFAYLAAKL-----DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 556678999999888875443 344557899999887 4999999999999999998765
No 41
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=89.27 E-value=0.24 Score=45.25 Aligned_cols=51 Identities=12% Similarity=0.247 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhchhhHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMETKRNKLL-WEVISTRMREKGYNRSAEQCKCKWKNLVT 105 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~skrn~~l-We~IS~kM~e~Gy~RTaeQCk~KwkNLkk 105 (292)
..||.+|-..||.+...+-. ++++.. |..||..|. .||+.||++.|.++.+
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn-----~r~ghk~W~~IAk~Lp----GRT~nsIRnRw~~~L~ 60 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPT-----RRTTHTLYDEISHYVP----NHTGNSIRHRFRVYLS 60 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGG-----GTTCSHHHHHHTTTST----TSCHHHHHHHHHHTTG
T ss_pred CCCCHHHHHHHHHHHHHhCc-----CccccccHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 48999999999998877422 233444 999998655 4999999999998543
No 42
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=88.23 E-value=0.5 Score=42.87 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKN 102 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkN 102 (292)
....||.+|...|+.....+. .-|..||..|. .||..||++=|-+
T Consensus 132 ~s~~WTeEE~~lFleAl~kYG----------KDW~~IAk~Vg----TKT~~QcKnfY~~ 176 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYG----------RDFQAISDVIG----NKSVVQVKNFFVN 176 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHS----------SCHHHHHHHHS----SCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHH
Confidence 356899999999988665542 23999998863 4999999987753
No 43
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.54 E-value=0.92 Score=32.25 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=33.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 022743 42 SDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKW 100 (292)
Q Consensus 42 ~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~Kw 100 (292)
+.....||.+|-..|+...... +.-|..||..|. .||+.||..-|
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~----------gk~w~~Ia~~l~----~rt~~~~v~~Y 53 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQH----------PKNFGLIASYLE----RKSVPDCVLYY 53 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHS----------TTCHHHHHHHCT----TSCHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHh----------CCCHHHHHHHcC----CCCHHHHHHHH
Confidence 4456899999999999877664 135888986653 49999997543
No 44
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=76.19 E-value=3.9 Score=32.12 Aligned_cols=56 Identities=20% Similarity=0.419 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhhhhcc
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGY-NRSAEQCKCKWKNLVTRYKGCE 111 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy-~RTaeQCk~KwkNLkk~YKkiK 111 (292)
+.||.+||..|+.+-...+-. |-.|+.+..-.++ .||.++.|.++=.+.+....++
T Consensus 31 ~~WT~eETd~LfdLc~~fdlR----------w~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLR----------FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC----------HHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCC----------eEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 359999999999998887644 5557776543333 6999999998888877665543
No 45
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=74.56 E-value=3.4 Score=41.07 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=33.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 022743 44 RFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKW 100 (292)
Q Consensus 44 R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~Kw 100 (292)
....||.+|+..|+.....+. .-|..|+..+. .+|+.||+.=|
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG----------kdw~~IA~~Vg----TKT~~Qvk~fy 421 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG----------RDFQAISDVIG----NKSVVQVKNFF 421 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT----------TCHHHHHHHHS----SCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHhC----CCCHHHHHHHH
Confidence 467999999999988665531 34999998864 48999999744
No 46
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.50 E-value=15 Score=26.04 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=29.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHH
Q 022743 41 TSDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCK 97 (292)
Q Consensus 41 ~~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk 97 (292)
|+...+.||.+|...|+........ -|..|+..+ .+ .+|..+|.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK----------df~~I~~~~--v~-~Kt~~~~v 48 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK----------NFFRIRKEL--LP-NKETGELI 48 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS----------CHHHHHHHS--CT-TSCHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc----------cHHHHHHHH--cC-CCcHHHHH
Confidence 3444578999999988876555432 267786642 12 48999995
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=51.86 E-value=17 Score=25.70 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 022743 46 PQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKN 102 (292)
Q Consensus 46 ~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~KwkN 102 (292)
..+|.+|=..||..-.+... .........+|..++.. .=-..|...|++.|.+
T Consensus 3 ~~FT~edD~~L~~~v~~~~~-~~~~~~Gn~iwk~la~~---~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENAR-SPSSVTGNALWKAMEKS---SLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCC-STTTTTSSHHHHHHHHS---CSSSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcc-ccCCCccHHHHHHHHHh---HCCCCCHHHHHHHHHH
Confidence 56899999999998776532 11223456899988761 1246899999999875
No 48
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=51.27 E-value=0.85 Score=34.52 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=30.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHHH
Q 022743 43 DRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCK 99 (292)
Q Consensus 43 ~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~K 99 (292)
..+..||.+|-++|-....-. ... ...-|+.||..+- | +|+.+|+.-
T Consensus 18 ~ss~~WT~eE~K~FE~ALa~y----p~~--tpdRWekIA~~Vp--G--KT~eEVk~h 64 (74)
T 4eef_G 18 GSGRPWKFSENIAFEIALSFT----NKD--TPDRWKKVAQYVK--G--RTPEEVKKH 64 (74)
T ss_dssp ----CCCTTHHHHHHHHTSSS----CSS--CCSSSTTTGGGSC--S--SCHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHC----CCC--CCcHHHHHHHHcC--C--CCHHHHHHH
Confidence 345689999999887755432 221 2356999987654 3 999999753
No 49
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=34.03 E-value=24 Score=25.26 Aligned_cols=19 Identities=26% Similarity=0.623 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHhhhhc
Q 022743 92 SAEQCKCKWKNLVTRYKGC 110 (292)
Q Consensus 92 TaeQCk~KwkNLkk~YKki 110 (292)
.+..|+.||+||...|+.+
T Consensus 12 asrk~rakfkn~lqh~r~v 30 (63)
T 2c9l_Y 12 AARKSRAKFKQLLQHYREV 30 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999986
No 50
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=29.01 E-value=1.7e+02 Score=23.84 Aligned_cols=60 Identities=10% Similarity=0.279 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHH----cC--------CC-CCHHHHHHHHHHHHHhh
Q 022743 48 WSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMRE----KG--------YN-RSAEQCKCKWKNLVTRY 107 (292)
Q Consensus 48 WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e----~G--------y~-RTaeQCk~KwkNLkk~Y 107 (292)
=|-+|+..|+.-.......|.....-...--.|...|.. .| |. .|+.....||.+|...-
T Consensus 42 ~sleEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~~npYT~it~~~l~~~W~~l~~li 114 (129)
T 1wlx_A 42 HTIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLV 114 (129)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCccchHHHHHHHHHHHHHHH
Confidence 467899999887666555555443222333233344443 33 53 67888888999887643
No 51
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=28.00 E-value=38 Score=25.99 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHH
Q 022743 45 FPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCK 97 (292)
Q Consensus 45 ~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk 97 (292)
...||.+|...|...+.... +-|-.|+..| =.||..+|-
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g----------K~F~~Ia~~l----~~Kt~~~cV 81 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP----------KNFGLIASFL----ERKTVAECV 81 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST----------TCHHHHHHTC----TTCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC----------CCHHHHHHHc----CCCCHHHHH
Confidence 57899999988887666543 3366686544 269999996
No 52
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=27.92 E-value=53 Score=23.72 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=29.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhHHhhhhchhhHHHHHHHHHHHHcCCCCCHHHHHH
Q 022743 42 SDRFPQWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKC 98 (292)
Q Consensus 42 ~~R~~~WT~eET~aLI~Ir~e~e~~F~~skrn~~lWe~IS~kM~e~Gy~RTaeQCk~ 98 (292)
++....||.+|...|......... -|..|+..| .+ .+|..+|..
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK----------df~~I~~~~--v~-~Kt~~~~v~ 48 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK----------DFNDIRQDF--LP-WKSLTSIIE 48 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS----------CHHHHHHTT--CS-SSCHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc----------cHHHHHHHH--cC-CCCHHHHHH
Confidence 355679999999888876555432 267787521 12 489999974
Done!