BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022744
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 129/299 (43%), Gaps = 24/299 (8%)
Query: 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPS----TSI 67
++ H +++ YP QGHINPL + AK L +G +T V T + K L + + T
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDF 66
Query: 68 SLEAISDGYD--EGGSAQTEGVEAYLERFWQIGPRSLCELVENMNGSG--VPVDCIVYDS 123
+ E+I DG EG ++ V + + + CEL+ +N S PV C+V D
Sbjct: 67 NFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDC 126
Query: 124 FLPWALDVAKKFGLVGAAFLTQSC--VVDCIYYH--VNKGXXXXXXXXXXXX-------- 171
+ + + A++F L + + S +++ +++ V +G
Sbjct: 127 CMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVD 186
Query: 172 -XPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWL 230
PG+ +D+ F+ + + ++ D ++K +L NTF ELE +V L
Sbjct: 187 WIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVA-DRVNKDTTILLNTFNELESDVINAL 245
Query: 231 GKHW-SLKTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLG 288
S+ IGP + QI + +++K + E C+ WL + G + + G
Sbjct: 246 SSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTE-CLDWLESKEPGSVVYVNFG 303
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 111/294 (37%), Gaps = 39/294 (13%)
Query: 12 KRVHCLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFISKSLHRDSSSPSTSISLE 70
K H ++ P GH+ PL++FAKRL H GL VT V S + + S S+
Sbjct: 5 KTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSIS 64
Query: 71 AI----SDGYDEGGSAQTEGVEAYLERFWQIGPRSLCELVENMN----GSGVPVDCIVYD 122
++ D D S + E R RS EL + + G +P +V D
Sbjct: 65 SVFLPPVDLTDLSSSTRIES------RISLTVTRSNPELRKVFDSFVEGGRLPT-ALVVD 117
Query: 123 SFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGXXXXX----XXXXXXXXPGMPPL 178
F A DVA +F + F + V + H+ K PG P+
Sbjct: 118 LFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPV 177
Query: 179 EPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDK---ADWVLCNTFYELEKEVAQWLGKHWS 235
+D D D K+ N + A+ +L NTF+ELE + L +
Sbjct: 178 AGKDFLDPAQDR------KDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGL 231
Query: 236 LK-TIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLG 288
K + P P + + KQ + + C+KWL+++ G + G
Sbjct: 232 DKPPVYPVGPLVNIGKQEAKQTE---------ESECLKWLDNQPLGSVLYVSFG 276
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 113/285 (39%), Gaps = 47/285 (16%)
Query: 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKV--TLVTTYFISKSLHRDS-SSPSTSISLEA 71
H VL++P H PLL +RL + +T + S+ DS + +I
Sbjct: 9 HVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYD 68
Query: 72 ISDGYDEG----GSAQTEGVEAYLERFWQIGPRSLCE-LVENMNGSGVPVDCIVYDSFLP 126
ISDG EG G Q + +E F + P S + +V + +G PV C+V D+F+
Sbjct: 69 ISDGVPEGYVFAGRPQED-----IELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIW 123
Query: 127 WALDVAKKFGL-------VGAAFLTQSCVVDCIYYHVNKGXXXXXXXXXXXXXPGMPPLE 179
+A D+A + G+ G L+ +D I + PGM +
Sbjct: 124 FAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVR 183
Query: 180 PQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGKHWSLKT- 238
+D+ + G+ ++ ++ + KA V N+F EL+ + L LKT
Sbjct: 184 FRDLQEGIV-FGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKS--KLKTY 240
Query: 239 --IGP----TIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDR 277
IGP T P + PN C++WL +R
Sbjct: 241 LNIGPFNLITPPPVV-----------------PNTTGCLQWLKER 268
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 61/299 (20%), Positives = 109/299 (36%), Gaps = 47/299 (15%)
Query: 1 MENIEKKAASCKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKV--TLVTTYFISKSLHR 58
M + + +H VL++P H PLL K++ + KV + T + +L
Sbjct: 1 MSTFKNEMNGNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFS 60
Query: 59 DSSSPSTSISLEAISDGYDEGGSAQTEG-------VEAYLERFWQIGPRSLCELVENMNG 111
S+ +I + DG +G + ++A E F + ++ E
Sbjct: 61 RSNEFLPNIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAE------- 113
Query: 112 SGVPVDCIVYDSFLPWALDVAKKFG-------LVGAAFLTQSCVVDCIYYHVNKGXXXXX 164
+G + C+V D+F + D+A++ G L D I G
Sbjct: 114 TGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKT--GSKEVH 171
Query: 165 XXXXXXXXPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEK 224
PG P L+ D+P V P + M+ K + + +A+ V N+F +
Sbjct: 172 DVKSIDVLPGFPELKASDLPEGVIKDIDVP-FATMLHKMGLE-LPRANAVAINSFATIHP 229
Query: 225 EVAQWLGKHWS-LKTIGP---TIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRAN 279
+ L + L +GP T P Q + ++G C++WL+ N
Sbjct: 230 LIENELNSKFKLLLNVGPFNLTTP------QRKVSDEHG----------CLEWLDQHEN 272
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 424
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 5 EKKAASCKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSP 63
E ++AS H + P GH+NP L + L +G +V+ T + + ++P
Sbjct: 4 EHRSASVTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAGATP 62
>pdb|1A8M|A Chain A, Tumor Necrosis Factor Alpha, R31d Mutant
pdb|1A8M|B Chain B, Tumor Necrosis Factor Alpha, R31d Mutant
pdb|1A8M|C Chain C, Tumor Necrosis Factor Alpha, R31d Mutant
Length = 157
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 255 DKDYGFSIFKPNNESCIKWLNDRANGLL 282
DK + P E ++WLNDRAN LL
Sbjct: 10 DKPVAHVVANPQAEGQLQWLNDRANALL 37
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
Query: 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEA 71
++ H L + GH+ P L L +G ++T VTT + + ++ + + ++
Sbjct: 3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEV---KAAGAEVVLYKS 59
Query: 72 ISDGYDEGGSAQTEGVEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSF 124
D + + E E L + ++ E G P D +VYD F
Sbjct: 60 EFDTFHVPEVVKQEDAETQLHLVYVRENVAILRAAEEALGDN-PPDLVVYDVF 111
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73
H + S A GH+NP L+ + L +G +VT + + P S
Sbjct: 8 AHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHSTLPGP 67
Query: 74 DGYDEG-GSAQTEGVEAYLERFWQIGPR 100
D E GS + VE +L Q P+
Sbjct: 68 DADPEAWGSTLLDNVEPFLNDAIQALPQ 95
>pdb|3EJ6|A Chain A, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|B Chain B, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|C Chain C, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|D Chain D, Neurospora Crassa Catalase-3 Crystal Structure
Length = 688
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 18 VLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYD 77
VLS G ++ ++LE GLKVT++ Y S S++ +T+ +++G +
Sbjct: 542 VLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAE 601
Query: 78 E 78
Sbjct: 602 R 602
>pdb|1HXM|B Chain B, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|D Chain D, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|F Chain F, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|H Chain H, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
Length = 242
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 183 MPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGKHWSLKTIGPT 242
+PS +++ P S + N++K D T+Y E Q LGK +K GP
Sbjct: 64 IPSGKFEVDRIPETSTSTL--TIHNVEKQD---IATYYCALWEAQQELGK--KIKVFGPG 116
Query: 243 IPSMYLDKQIEEDKDYGFSIFKPN 266
+ DKQ++ D +IF P+
Sbjct: 117 TKLIITDKQLDADVSPKPTIFLPS 140
>pdb|1FH7|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Deoxynojirimycin
pdb|1FH8|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Isofagomine Inhibitor
pdb|1FH9|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Lactam Oxime Inhibitor
pdb|1FHD|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Imidazole Inhibitor
pdb|1J01|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Isofagomine Lactam
pdb|1EXP|A Chain A, Beta-1,4-Glycanase Cex-Cd
pdb|2EXO|A Chain A, Crystal Structure Of The Catalytic Domain Of The Beta-1,4-
Glycanase Cex From Cellulomonas Fimi
pdb|2XYL|A Chain A, Cellulomonas Fimi XylanaseCELLULASE COMPLEXED WITH
2-Deoxy- 2-Fluoro-Xylobiose
Length = 312
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 101 SLCELVENMNGSGVPVDCIVYDSFL 125
SL +LV++ GVP+DC+ + S L
Sbjct: 182 SLYDLVKDFKARGVPLDCVGFQSHL 206
>pdb|3CUF|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellobiose-Like Isofagomine
pdb|3CUG|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotetraose-Like Isofagomine
pdb|3CUH|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotriose-Like Isofagomine
pdb|3CUI|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylotetraose
pdb|3CUJ|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylopentaose
Length = 315
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 101 SLCELVENMNGSGVPVDCIVYDSFL 125
SL +LV++ GVP+DC+ + S L
Sbjct: 182 SLYDLVKDFKARGVPLDCVGFQSHL 206
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 73 SDGYDEGGSAQTEGVEAYLERFWQIGPRSLCELVENMNGSG 113
SD YD G+A + AY++ F+Q G + L EL+ ++ +G
Sbjct: 76 SDDYDNEGAASSNPQSAYVKAFYQKGNK-LVELMRIISRNG 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,121,740
Number of Sequences: 62578
Number of extensions: 374393
Number of successful extensions: 766
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 14
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)