Query 022744
Match_columns 292
No_of_seqs 183 out of 1440
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:49:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02173 UDP-glucosyl transfer 100.0 8.9E-55 1.9E-59 410.3 28.1 271 12-291 4-275 (449)
2 PLN02555 limonoid glucosyltran 100.0 9.7E-54 2.1E-58 406.3 28.7 272 12-291 6-288 (480)
3 PLN02152 indole-3-acetate beta 100.0 6.5E-52 1.4E-56 391.5 27.4 265 13-291 3-272 (455)
4 PLN02410 UDP-glucoronosyl/UDP- 100.0 1E-50 2.3E-55 383.8 27.4 260 12-291 6-275 (451)
5 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.2E-50 2.6E-55 385.9 26.2 270 12-291 8-294 (477)
6 PLN02534 UDP-glycosyltransfera 100.0 1.9E-50 4.1E-55 384.4 25.3 271 8-291 2-294 (491)
7 PLN02562 UDP-glycosyltransfera 100.0 2E-49 4.4E-54 375.5 28.4 267 11-291 4-284 (448)
8 PLN03004 UDP-glycosyltransfera 100.0 4.3E-49 9.4E-54 371.9 26.1 265 12-291 2-281 (451)
9 PLN03015 UDP-glucosyl transfer 100.0 4.6E-49 1E-53 372.0 26.1 258 12-291 2-278 (470)
10 PLN02992 coniferyl-alcohol glu 100.0 3.6E-49 7.9E-54 374.4 25.2 254 12-291 4-274 (481)
11 PLN02210 UDP-glucosyl transfer 100.0 1E-48 2.2E-53 371.2 27.3 270 10-291 5-280 (456)
12 PLN02670 transferase, transfer 100.0 5.1E-49 1.1E-53 373.0 24.3 264 12-291 5-289 (472)
13 PLN00164 glucosyltransferase; 100.0 1.2E-48 2.5E-53 373.0 25.1 259 12-291 2-283 (480)
14 PLN02764 glycosyltransferase f 100.0 1.9E-48 4E-53 366.8 24.7 250 12-291 4-268 (453)
15 PLN02207 UDP-glycosyltransfera 100.0 1.2E-47 2.7E-52 363.2 26.8 266 12-291 2-286 (468)
16 PLN00414 glycosyltransferase f 100.0 8.9E-48 1.9E-52 363.4 24.1 249 12-292 3-264 (446)
17 PLN02554 UDP-glycosyltransfera 100.0 1.6E-46 3.4E-51 359.1 26.5 259 12-291 1-285 (481)
18 PLN02167 UDP-glycosyltransfera 100.0 1.6E-46 3.4E-51 358.6 24.6 265 12-291 2-291 (475)
19 PLN02208 glycosyltransferase f 100.0 7.7E-46 1.7E-50 349.8 25.1 248 13-291 4-262 (442)
20 PLN02448 UDP-glycosyltransfera 100.0 3.3E-45 7.1E-50 348.5 27.0 266 11-291 8-285 (459)
21 PLN03007 UDP-glucosyltransfera 100.0 1.9E-43 4.1E-48 338.1 26.8 269 11-291 3-296 (482)
22 KOG1192 UDP-glucuronosyl and U 99.9 9.5E-23 2E-27 196.3 2.0 262 13-291 5-288 (496)
23 TIGR01426 MGT glycosyltransfer 99.7 4.3E-16 9.3E-21 145.9 16.4 118 19-144 1-121 (392)
24 cd03784 GT1_Gtf_like This fami 99.5 1.2E-14 2.5E-19 136.4 8.8 125 14-146 1-135 (401)
25 PHA03392 egt ecdysteroid UDP-g 99.5 2.3E-12 5E-17 124.5 18.7 246 13-291 20-307 (507)
26 PF00201 UDPGT: UDP-glucoronos 99.4 1.1E-13 2.3E-18 133.7 3.8 58 15-77 2-59 (500)
27 PF03033 Glyco_transf_28: Glyc 99.1 9.3E-12 2E-16 99.5 0.1 123 16-147 1-132 (139)
28 COG1819 Glycosyl transferases, 98.2 2.2E-06 4.7E-11 80.9 5.2 118 13-141 1-121 (406)
29 PF13528 Glyco_trans_1_3: Glyc 98.1 2.9E-05 6.2E-10 70.4 11.5 121 15-148 2-126 (318)
30 TIGR00661 MJ1255 conserved hyp 98.0 4E-05 8.7E-10 70.0 10.8 119 17-146 4-123 (321)
31 PRK12446 undecaprenyldiphospho 97.3 0.0046 1E-07 57.3 12.2 121 15-150 3-128 (352)
32 COG0707 MurG UDP-N-acetylgluco 96.9 0.026 5.6E-07 52.5 13.3 122 15-148 2-126 (357)
33 cd03785 GT1_MurG MurG is an N- 96.6 0.035 7.7E-07 50.6 12.1 115 15-142 1-118 (350)
34 TIGR01133 murG undecaprenyldip 96.3 0.086 1.9E-06 48.0 12.6 113 15-142 2-119 (348)
35 cd03818 GT1_ExpC_like This fam 96.2 0.11 2.4E-06 48.5 13.4 104 29-143 12-116 (396)
36 PRK00726 murG undecaprenyldiph 95.9 0.16 3.4E-06 46.7 12.4 116 14-142 2-120 (357)
37 TIGR00215 lpxB lipid-A-disacch 94.7 0.21 4.6E-06 46.8 9.5 37 14-51 6-42 (385)
38 cd03800 GT1_Sucrose_synthase T 94.3 0.34 7.4E-06 44.6 9.7 108 24-142 21-130 (398)
39 cd03816 GT1_ALG1_like This fam 94.0 1.1 2.4E-05 42.3 12.8 58 13-73 3-60 (415)
40 COG4671 Predicted glycosyl tra 93.9 0.32 7E-06 44.6 8.3 59 11-74 7-69 (400)
41 TIGR03590 PseG pseudaminic aci 93.7 0.37 8E-06 43.1 8.4 46 22-73 12-60 (279)
42 cd03823 GT1_ExpE7_like This fa 93.4 1.2 2.5E-05 39.8 11.3 30 24-53 15-44 (359)
43 PRK10307 putative glycosyl tra 92.2 1.9 4.1E-05 40.4 11.3 22 30-51 21-42 (412)
44 cd03794 GT1_wbuB_like This fam 91.7 2.2 4.8E-05 38.2 10.9 29 24-52 14-42 (394)
45 TIGR02470 sucr_synth sucrose s 91.5 5.2 0.00011 41.1 14.0 130 3-141 244-413 (784)
46 TIGR02468 sucrsPsyn_pln sucros 91.3 2.5 5.5E-05 44.6 11.7 129 13-142 169-339 (1050)
47 PRK00025 lpxB lipid-A-disaccha 91.0 1.7 3.7E-05 40.1 9.5 35 14-49 2-36 (380)
48 PLN00142 sucrose synthase 90.0 2.9 6.3E-05 43.0 10.6 104 32-144 319-439 (815)
49 TIGR03449 mycothiol_MshA UDP-N 89.1 5.7 0.00012 36.9 11.4 112 23-144 19-132 (405)
50 cd03808 GT1_cap1E_like This fa 89.0 8.3 0.00018 33.9 12.1 53 16-73 2-54 (359)
51 PF12000 Glyco_trans_4_3: Gkyc 89.0 6.6 0.00014 32.5 10.3 92 39-143 1-95 (171)
52 cd03805 GT1_ALG2_like This fam 88.2 8.4 0.00018 35.4 11.8 25 27-51 16-40 (392)
53 PF13579 Glyco_trans_4_4: Glyc 85.6 1 2.2E-05 35.2 3.6 96 29-143 6-103 (160)
54 PF04007 DUF354: Protein of un 84.2 17 0.00036 33.6 11.3 104 24-148 10-115 (335)
55 TIGR02472 sucr_P_syn_N sucrose 82.9 13 0.00027 35.4 10.4 109 26-143 28-144 (439)
56 cd03814 GT1_like_2 This family 82.8 2.1 4.5E-05 38.3 4.8 29 24-52 14-42 (364)
57 cd04962 GT1_like_5 This family 82.2 1.7 3.7E-05 39.6 4.0 37 15-51 2-39 (371)
58 PLN02871 UDP-sulfoquinovose:DA 81.2 2.9 6.2E-05 40.1 5.4 41 11-51 56-101 (465)
59 PF13477 Glyco_trans_4_2: Glyc 81.0 3.5 7.6E-05 31.9 5.0 50 16-73 2-51 (139)
60 PF13439 Glyco_transf_4: Glyco 80.2 2 4.3E-05 34.1 3.4 29 25-53 13-41 (177)
61 PRK02261 methylaspartate mutas 79.4 4.6 0.0001 32.1 5.2 44 11-54 1-44 (137)
62 COG3980 spsG Spore coat polysa 77.7 2.5 5.3E-05 37.9 3.3 39 15-53 2-44 (318)
63 PRK13609 diacylglycerol glucos 76.2 4 8.8E-05 37.7 4.6 39 12-50 3-42 (380)
64 cd03817 GT1_UGDG_like This fam 75.6 4.4 9.6E-05 36.1 4.6 33 20-52 10-42 (374)
65 cd02067 B12-binding B12 bindin 75.5 5 0.00011 30.6 4.2 36 15-50 1-36 (119)
66 PLN02275 transferase, transfer 74.8 70 0.0015 29.5 13.9 56 13-73 6-62 (371)
67 TIGR03600 phage_DnaB phage rep 67.7 24 0.00051 33.5 7.7 42 15-56 196-238 (421)
68 cd03821 GT1_Bme6_like This fam 67.7 8.2 0.00018 34.3 4.4 30 23-52 13-42 (375)
69 cd04955 GT1_like_6 This family 67.3 13 0.00028 33.4 5.7 46 24-73 15-60 (363)
70 cd04951 GT1_WbdM_like This fam 66.9 6.2 0.00013 35.4 3.5 29 23-51 11-39 (360)
71 PRK00654 glgA glycogen synthas 66.9 8.9 0.00019 36.8 4.7 27 25-51 18-44 (466)
72 PRK08506 replicative DNA helic 66.7 23 0.00049 34.3 7.4 42 15-56 194-235 (472)
73 cd03825 GT1_wcfI_like This fam 66.2 9.5 0.00021 34.3 4.6 38 15-52 2-41 (365)
74 PF02310 B12-binding: B12 bind 65.6 15 0.00033 27.7 5.0 37 15-51 2-38 (121)
75 cd03802 GT1_AviGT4_like This f 64.4 12 0.00027 33.2 4.9 27 25-51 20-46 (335)
76 PRK05749 3-deoxy-D-manno-octul 63.8 34 0.00074 32.1 8.0 99 15-144 51-155 (425)
77 PLN02846 digalactosyldiacylgly 63.6 12 0.00026 36.2 4.8 40 12-51 3-47 (462)
78 PF02441 Flavoprotein: Flavopr 63.6 16 0.00035 28.3 4.9 41 15-56 2-42 (129)
79 cd01635 Glycosyltransferase_GT 63.3 11 0.00024 30.9 4.1 26 23-48 12-37 (229)
80 cd01425 RPS2 Ribosomal protein 61.7 30 0.00066 29.0 6.5 32 115-146 127-160 (193)
81 TIGR02095 glgA glycogen/starch 58.3 17 0.00036 34.9 4.9 38 14-51 1-44 (473)
82 cd03795 GT1_like_4 This family 57.7 16 0.00034 32.7 4.4 30 23-52 13-42 (357)
83 cd02070 corrinoid_protein_B12- 57.3 19 0.00042 30.4 4.6 38 13-50 82-119 (201)
84 PRK06321 replicative DNA helic 56.5 55 0.0012 31.7 8.0 41 15-55 228-269 (472)
85 PRK13935 stationary phase surv 56.4 1.2E+02 0.0025 26.9 9.4 27 30-57 16-42 (253)
86 PRK08760 replicative DNA helic 56.0 31 0.00066 33.5 6.2 41 15-55 231-272 (476)
87 COG0496 SurE Predicted acid ph 56.0 1.3E+02 0.0027 26.7 9.4 26 30-56 16-41 (252)
88 PRK05595 replicative DNA helic 55.9 32 0.0007 32.9 6.4 41 15-55 203-244 (444)
89 cd03806 GT1_ALG11_like This fa 55.1 1.8E+02 0.0038 27.4 11.2 109 28-146 18-139 (419)
90 TIGR02370 pyl_corrinoid methyl 54.5 23 0.00051 29.8 4.6 43 12-54 83-125 (197)
91 PRK06904 replicative DNA helic 54.3 32 0.00068 33.3 6.0 42 15-56 223-265 (472)
92 cd03820 GT1_amsD_like This fam 54.0 21 0.00046 31.1 4.6 31 23-53 12-42 (348)
93 PF07894 DUF1669: Protein of u 53.8 17 0.00037 32.6 3.8 47 100-146 133-184 (284)
94 cd03796 GT1_PIG-A_like This fa 53.7 35 0.00075 31.7 6.1 27 25-51 15-41 (398)
95 cd03784 GT1_Gtf_like This fami 53.6 8.9 0.00019 35.6 2.1 23 267-291 228-250 (401)
96 cd03801 GT1_YqgM_like This fam 53.5 23 0.00049 31.0 4.7 30 24-53 14-43 (374)
97 cd03811 GT1_WabH_like This fam 53.4 22 0.00048 31.0 4.6 31 23-53 11-41 (353)
98 cd02071 MM_CoA_mut_B12_BD meth 52.0 29 0.00063 26.7 4.5 37 15-51 1-37 (122)
99 COG1484 DnaC DNA replication p 51.4 20 0.00044 31.6 3.9 47 12-58 104-150 (254)
100 PLN02316 synthase/transferase 51.2 31 0.00068 36.7 5.7 45 8-52 582-632 (1036)
101 PF09314 DUF1972: Domain of un 50.0 29 0.00062 29.1 4.4 40 30-73 23-62 (185)
102 PF04127 DFP: DNA / pantothena 49.1 18 0.00039 30.3 3.1 30 20-51 24-53 (185)
103 cd00561 CobA_CobO_BtuR ATP:cor 49.1 1.4E+02 0.003 24.3 8.2 58 16-75 5-65 (159)
104 PRK07773 replicative DNA helic 49.1 66 0.0014 33.8 7.8 41 16-56 220-261 (886)
105 cd03791 GT1_Glycogen_synthase_ 48.2 17 0.00037 34.6 3.2 27 25-51 17-43 (476)
106 PF03808 Glyco_tran_WecB: Glyc 48.2 1.2E+02 0.0025 24.9 7.8 95 30-147 37-136 (172)
107 PF08323 Glyco_transf_5: Starc 48.0 16 0.00035 31.9 2.7 26 26-51 18-43 (245)
108 PF08452 DNAP_B_exo_N: DNA pol 47.9 9.8 0.00021 19.9 0.8 18 268-285 3-20 (22)
109 PRK09165 replicative DNA helic 47.7 54 0.0012 31.9 6.5 41 16-56 220-275 (497)
110 PRK05748 replicative DNA helic 47.5 78 0.0017 30.3 7.5 42 15-56 205-247 (448)
111 PRK08305 spoVFB dipicolinate s 47.0 27 0.00059 29.6 3.8 39 14-53 6-45 (196)
112 KOG0859 Synaptobrevin/VAMP-lik 46.6 8 0.00017 32.6 0.5 19 1-19 142-160 (217)
113 PLN02891 IMP cyclohydrolase 46.5 55 0.0012 32.1 6.1 42 29-78 34-77 (547)
114 PF12146 Hydrolase_4: Putative 46.2 44 0.00095 23.6 4.3 33 14-46 16-48 (79)
115 cd02069 methionine_synthase_B1 46.0 45 0.00097 28.5 5.1 40 12-51 87-126 (213)
116 cd01421 IMPCH Inosine monophos 45.7 53 0.0012 27.6 5.3 42 29-78 12-55 (187)
117 PF04244 DPRP: Deoxyribodipyri 45.6 21 0.00045 30.9 3.0 27 25-51 46-72 (224)
118 TIGR00355 purH phosphoribosyla 44.9 35 0.00075 33.2 4.5 42 29-78 12-55 (511)
119 PRK13931 stationary phase surv 44.1 2.3E+02 0.005 25.1 10.3 98 30-144 16-129 (261)
120 PF00070 Pyr_redox: Pyridine n 43.4 33 0.00072 23.9 3.3 24 29-52 10-33 (80)
121 cd03786 GT1_UDP-GlcNAc_2-Epime 43.3 64 0.0014 29.2 6.1 31 21-51 6-37 (363)
122 PF02603 Hpr_kinase_N: HPr Ser 42.5 25 0.00055 27.4 2.8 44 100-144 68-113 (127)
123 PRK05636 replicative DNA helic 42.0 55 0.0012 32.0 5.6 41 15-55 267-308 (505)
124 COG0299 PurN Folate-dependent 41.6 64 0.0014 27.4 5.1 46 101-146 13-60 (200)
125 PF02951 GSH-S_N: Prokaryotic 41.4 66 0.0014 24.9 4.9 26 27-52 17-42 (119)
126 PRK07004 replicative DNA helic 41.2 1.1E+02 0.0024 29.5 7.5 42 15-56 215-257 (460)
127 COG2185 Sbm Methylmalonyl-CoA 40.4 52 0.0011 26.4 4.2 39 11-49 10-48 (143)
128 PF01975 SurE: Survival protei 40.3 29 0.00062 29.4 3.0 28 29-56 15-42 (196)
129 cd03798 GT1_wlbH_like This fam 39.5 40 0.00087 29.6 4.0 31 23-53 13-43 (377)
130 COG1618 Predicted nucleotide k 39.3 2.2E+02 0.0048 23.6 7.7 56 12-73 4-59 (179)
131 COG4081 Uncharacterized protei 38.5 32 0.0007 27.1 2.7 31 25-55 16-46 (148)
132 PF13450 NAD_binding_8: NAD(P) 38.3 40 0.00087 23.0 3.0 21 31-51 9-29 (68)
133 TIGR00679 hpr-ser Hpr(Ser) kin 37.8 1.9E+02 0.0041 26.3 7.9 51 96-147 65-117 (304)
134 PLN02939 transferase, transfer 37.3 68 0.0015 33.9 5.5 41 11-51 479-525 (977)
135 cd03812 GT1_CapH_like This fam 37.1 39 0.00085 30.2 3.6 31 22-52 10-40 (358)
136 COG1797 CobB Cobyrinic acid a, 36.6 51 0.0011 31.5 4.2 30 17-46 5-34 (451)
137 KOG2941 Beta-1,4-mannosyltrans 36.0 1.1E+02 0.0025 28.5 6.2 58 12-74 11-70 (444)
138 PRK00881 purH bifunctional pho 35.9 62 0.0013 31.6 4.8 44 27-78 14-59 (513)
139 PRK14098 glycogen synthase; Pr 35.9 65 0.0014 31.3 5.0 42 10-51 2-49 (489)
140 cd03819 GT1_WavL_like This fam 35.9 36 0.00078 30.4 3.1 99 24-145 10-110 (355)
141 PF01380 SIS: SIS domain SIS d 35.3 72 0.0016 24.1 4.4 39 16-54 55-93 (131)
142 PRK05368 homoserine O-succinyl 35.2 15 0.00032 33.4 0.5 23 268-291 125-147 (302)
143 PRK13982 bifunctional SbtC-lik 35.0 58 0.0013 31.6 4.5 41 12-52 255-307 (475)
144 COG1817 Uncharacterized protei 34.9 3.7E+02 0.0079 24.8 10.6 108 21-148 7-116 (346)
145 cd02067 B12-binding B12 bindin 34.3 56 0.0012 24.6 3.6 40 10-49 47-87 (119)
146 TIGR03492 conserved hypothetic 34.0 3.6E+02 0.0079 25.2 9.7 101 27-142 10-119 (396)
147 PRK07313 phosphopantothenoylcy 33.3 66 0.0014 26.8 4.0 39 15-54 3-41 (182)
148 TIGR02852 spore_dpaB dipicolin 33.1 64 0.0014 27.1 3.9 39 15-53 2-40 (187)
149 TIGR02193 heptsyl_trn_I lipopo 33.1 75 0.0016 28.5 4.8 53 15-72 1-56 (319)
150 cd03807 GT1_WbnK_like This fam 33.0 68 0.0015 28.1 4.4 33 19-51 7-39 (365)
151 PRK14099 glycogen synthase; Pr 33.0 76 0.0017 30.7 5.0 40 12-51 2-47 (485)
152 COG1703 ArgK Putative periplas 32.9 1.1E+02 0.0023 28.0 5.4 51 5-55 42-93 (323)
153 cd01018 ZntC Metal binding pro 32.4 1.4E+02 0.0031 26.2 6.3 51 101-153 205-257 (266)
154 cd02065 B12-binding_like B12 b 32.2 91 0.002 23.4 4.5 36 15-50 1-36 (125)
155 PRK10964 ADP-heptose:LPS hepto 31.7 84 0.0018 28.3 4.8 43 14-56 1-45 (322)
156 cd00861 ProRS_anticodon_short 31.7 1.1E+02 0.0023 21.7 4.5 35 14-48 2-38 (94)
157 PRK10916 ADP-heptose:LPS hepto 31.2 79 0.0017 28.8 4.6 52 15-71 2-55 (348)
158 PRK09620 hypothetical protein; 31.1 48 0.001 28.7 2.9 28 22-51 26-53 (229)
159 TIGR02113 coaC_strep phosphopa 30.8 65 0.0014 26.7 3.6 36 19-54 5-40 (177)
160 cd03799 GT1_amsK_like This is 30.5 86 0.0019 27.8 4.7 26 26-51 13-38 (355)
161 cd03822 GT1_ecORF704_like This 30.4 75 0.0016 28.1 4.3 29 24-52 13-41 (366)
162 PF09001 DUF1890: Domain of un 30.3 34 0.00074 27.2 1.7 31 27-57 13-43 (139)
163 PF08026 Antimicrobial_5: Bee 30.0 8.2 0.00018 22.9 -1.3 23 19-41 16-38 (39)
164 cd02034 CooC The accessory pro 29.3 1.2E+02 0.0027 23.0 4.7 37 15-51 1-37 (116)
165 PF03720 UDPG_MGDP_dh_C: UDP-g 29.1 69 0.0015 23.8 3.2 24 28-51 17-40 (106)
166 PRK06732 phosphopantothenate-- 29.0 57 0.0012 28.2 3.0 31 18-50 19-49 (229)
167 COG0313 Predicted methyltransf 28.9 1.2E+02 0.0027 27.0 5.1 39 117-155 80-125 (275)
168 COG0052 RpsB Ribosomal protein 28.9 92 0.002 27.4 4.2 31 116-146 157-189 (252)
169 PTZ00445 p36-lilke protein; Pr 28.7 64 0.0014 27.8 3.2 28 25-52 74-102 (219)
170 PRK01175 phosphoribosylformylg 28.5 4.2E+02 0.009 23.4 8.5 57 12-76 2-58 (261)
171 PRK10422 lipopolysaccharide co 28.2 1.1E+02 0.0024 27.9 5.1 54 12-70 4-59 (352)
172 PRK05920 aromatic acid decarbo 28.0 81 0.0018 26.9 3.7 41 13-54 3-43 (204)
173 COG0162 TyrS Tyrosyl-tRNA synt 27.8 64 0.0014 30.5 3.4 37 14-51 35-74 (401)
174 PF08897 DUF1841: Domain of un 27.8 41 0.0009 26.7 1.8 19 21-39 56-74 (137)
175 COG1255 Uncharacterized protei 27.7 63 0.0014 25.0 2.7 34 29-71 24-57 (129)
176 PF02310 B12-binding: B12 bind 27.6 52 0.0011 24.7 2.3 38 11-48 49-86 (121)
177 PRK01021 lpxB lipid-A-disaccha 27.5 6.4E+02 0.014 25.4 10.3 42 101-144 298-344 (608)
178 PF03853 YjeF_N: YjeF-related 27.4 68 0.0015 26.2 3.1 39 10-49 22-60 (169)
179 PRK12311 rpsB 30S ribosomal pr 27.3 99 0.0022 28.4 4.4 33 115-147 152-186 (326)
180 TIGR00421 ubiX_pad polyprenyl 27.1 81 0.0018 26.2 3.6 26 30-55 15-40 (181)
181 TIGR00236 wecB UDP-N-acetylglu 27.1 3.3E+02 0.007 24.8 8.0 107 19-142 5-116 (365)
182 PRK05428 HPr kinase/phosphoryl 26.9 3.5E+02 0.0076 24.7 7.8 55 94-149 63-119 (308)
183 PRK04940 hypothetical protein; 26.5 1.3E+02 0.0029 25.1 4.7 32 117-148 62-94 (180)
184 TIGR00708 cobA cob(I)alamin ad 26.1 3.8E+02 0.0082 22.2 8.9 97 13-125 5-107 (173)
185 KOG1014 17 beta-hydroxysteroid 24.6 69 0.0015 29.1 2.8 18 31-48 63-80 (312)
186 TIGR03568 NeuC_NnaA UDP-N-acet 24.4 2.5E+02 0.0055 25.9 6.7 114 19-145 5-126 (365)
187 TIGR02700 flavo_MJ0208 archaeo 24.1 1.1E+02 0.0024 26.5 3.9 37 18-54 3-42 (234)
188 TIGR02699 archaeo_AfpA archaeo 24.1 1.1E+02 0.0023 25.4 3.7 33 21-53 6-40 (174)
189 cd03789 GT1_LPS_heptosyltransf 24.1 1.2E+02 0.0027 26.5 4.4 43 15-57 1-45 (279)
190 KOG4589 Cell division protein 24.0 72 0.0016 27.1 2.6 23 101-125 124-146 (232)
191 PF07015 VirC1: VirC1 protein; 23.9 1.2E+02 0.0025 26.5 4.0 34 22-55 11-44 (231)
192 PF01210 NAD_Gly3P_dh_N: NAD-d 23.8 69 0.0015 25.6 2.5 21 31-51 12-32 (157)
193 COG0300 DltE Short-chain dehyd 23.6 80 0.0017 28.1 3.0 32 15-49 7-38 (265)
194 PF06506 PrpR_N: Propionate ca 23.6 81 0.0018 25.9 2.9 43 99-146 111-153 (176)
195 PF01555 N6_N4_Mtase: DNA meth 23.2 1.4E+02 0.003 24.8 4.4 31 117-147 192-224 (231)
196 PF00289 CPSase_L_chain: Carba 23.2 59 0.0013 24.7 1.8 33 17-51 75-107 (110)
197 PF02558 ApbA: Ketopantoate re 22.9 84 0.0018 24.6 2.8 22 31-52 11-32 (151)
198 PF02780 Transketolase_C: Tran 22.9 1.7E+02 0.0037 22.2 4.5 39 11-51 7-45 (124)
199 PF01316 Arg_repressor: Argini 22.8 45 0.00097 23.2 1.0 21 31-51 23-43 (70)
200 COG2085 Predicted dinucleotide 22.8 82 0.0018 27.0 2.8 28 23-52 8-35 (211)
201 COG2910 Putative NADH-flavin r 22.2 85 0.0018 26.6 2.7 21 31-51 14-34 (211)
202 TIGR01007 eps_fam capsular exo 21.8 2E+02 0.0044 23.8 5.1 39 13-51 16-56 (204)
203 COG0467 RAD55 RecA-superfamily 21.7 1.3E+02 0.0029 26.1 4.1 43 14-56 24-66 (260)
204 CHL00067 rps2 ribosomal protei 21.7 1.6E+02 0.0035 25.5 4.5 32 115-146 161-194 (230)
205 cd01983 Fer4_NifH The Fer4_Nif 21.6 2.2E+02 0.0048 19.4 4.7 33 16-48 2-34 (99)
206 TIGR00288 conserved hypothetic 21.5 1.2E+02 0.0025 24.9 3.3 32 15-51 108-139 (160)
207 KOG3400 RNA polymerase subunit 21.5 59 0.0013 25.6 1.5 15 276-290 103-117 (143)
208 PF02142 MGS: MGS-like domain 21.4 88 0.0019 22.7 2.4 35 30-72 2-36 (95)
209 TIGR00064 ftsY signal recognit 21.2 1.7E+02 0.0037 25.9 4.7 38 15-52 74-111 (272)
210 TIGR02114 coaB_strep phosphopa 21.2 92 0.002 26.8 2.9 19 30-48 28-46 (227)
211 PRK05299 rpsB 30S ribosomal pr 21.2 1.5E+02 0.0033 26.2 4.3 32 115-146 157-190 (258)
212 cd00860 ThrRS_anticodon ThrRS 21.0 2.1E+02 0.0046 19.8 4.5 33 15-48 3-35 (91)
213 TIGR00234 tyrS tyrosyl-tRNA sy 20.9 88 0.0019 29.3 2.9 27 24-51 46-72 (377)
214 COG1435 Tdk Thymidine kinase [ 20.9 5.3E+02 0.011 22.0 10.7 35 18-52 9-43 (201)
215 PRK13604 luxD acyl transferase 20.5 2.2E+02 0.0048 25.9 5.2 32 15-46 38-69 (307)
216 PRK13479 2-aminoethylphosphona 20.4 1.4E+02 0.0029 27.3 4.0 40 3-42 121-162 (368)
217 cd02069 methionine_synthase_B1 20.4 1.4E+02 0.0029 25.6 3.7 40 11-50 137-176 (213)
218 TIGR02195 heptsyl_trn_II lipop 20.2 1.3E+02 0.0029 27.1 3.9 43 15-57 1-45 (334)
219 KOG2585 Uncharacterized conser 20.2 1.8E+02 0.0039 27.9 4.7 36 12-50 265-302 (453)
220 cd05014 SIS_Kpsf KpsF-like pro 20.1 2.2E+02 0.0048 21.3 4.7 37 18-54 51-87 (128)
221 PF12695 Abhydrolase_5: Alpha/ 20.1 2.4E+02 0.0053 21.1 5.0 32 17-48 2-33 (145)
222 cd03115 SRP The signal recogni 20.1 2.1E+02 0.0046 22.8 4.8 38 16-53 3-40 (173)
223 COG0569 TrkA K+ transport syst 20.1 90 0.002 26.8 2.6 21 31-51 13-33 (225)
No 1
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.9e-55 Score=410.32 Aligned_cols=271 Identities=43% Similarity=0.777 Sum_probs=207.1
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHHH
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYL 91 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 91 (292)
+++|||++|||+|||+|||++|||+|+++|++|||++|+.+..++... ..++|+++.+|+|+|+.+.+...++..++
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~---~~~~i~~~~ipdglp~~~~~~~~~~~~~~ 80 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD---PSSPISIATISDGYDQGGFSSAGSVPEYL 80 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC---CCCCEEEEEcCCCCCCcccccccCHHHHH
Confidence 468999999999999999999999999999999999999876655321 12469999999999863223333455666
Q ss_pred HHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHhcCCCCCCCCCcccc
Q 022744 92 ERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGLLKLPLLDSQLL 171 (292)
Q Consensus 92 ~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 171 (292)
..+.+.+.+.++++++++..+.+|++|||+|.|++|+.++|+++|||++.||++++++++++++.... .++..+.
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~-----~~~~~~~ 155 (449)
T PLN02173 81 QNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYIN-----NGSLTLP 155 (449)
T ss_pred HHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhc-----cCCccCC
Confidence 66666677889999887643335679999999999999999999999999999999988777653211 1123456
Q ss_pred cCCCCCCCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhcccCCeeeeccCCCCcccccc
Q 022744 172 LPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGKHWSLKTIGPTIPSMYLDKQ 251 (292)
Q Consensus 172 iPg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~~~~v~~VGPl~~~~~~~~~ 251 (292)
+||+|+++.+|||.++.+.+.....++.+.+ ..+...++++|++|||+|||+++++++++..|+|+||||++...++.+
T Consensus 156 ~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~v~~VGPl~~~~~~~~~ 234 (449)
T PLN02173 156 IKDLPLLELQDLPTFVTPTGSHLAYFEMVLQ-QFTNFDKADFVLVNSFHDLDLHENELLSKVCPVLTIGPTVPSMYLDQQ 234 (449)
T ss_pred CCCCCCCChhhCChhhcCCCCchHHHHHHHH-HHhhhccCCEEEEeCHHHhhHHHHHHHHhcCCeeEEcccCchhhcccc
Confidence 8999999999999877643333345566666 777888999999999999999999999876689999999864221111
Q ss_pred ccccccCCcCCCC-CCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 252 IEEDKDYGFSIFK-PNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 252 ~~~~~~~~~~~~~-~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
...+...+.++|. +++++|++|||+|+++|||||||||.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~ 275 (449)
T PLN02173 235 IKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMA 275 (449)
T ss_pred ccccccccccccccccchHHHHHHhcCCCCceEEEEecccc
Confidence 0011111123442 234579999999999999999999975
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=9.7e-54 Score=406.31 Aligned_cols=272 Identities=33% Similarity=0.630 Sum_probs=210.0
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccC--C-C---CC--CCCeeEEEccCCCCCCCCCC
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRD--S-S---SP--STSISLEAISDGYDEGGSAQ 83 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~--~-~---~~--~~~i~~~~l~~~~~~~~~~~ 83 (292)
.++|||++|||+|||+|||++||++|++||+.|||++|+.+..++.+. . + .. ...++|..+|+|+|+ +.+.
T Consensus 6 ~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~-~~~~ 84 (480)
T PLN02555 6 SLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAE-DDPR 84 (480)
T ss_pred CCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCC-Cccc
Confidence 368999999999999999999999999999999999999877655421 0 0 01 124778878888876 4333
Q ss_pred ccCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHhcCCCCC
Q 022744 84 TEGVEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGLLKL 163 (292)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~ 163 (292)
..++..++..+.+.+.+.++++++++..+++|++|||+|.|++|+.++|+++|||+++||+++|+++++++++..+.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~~~ 164 (480)
T PLN02555 85 RQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLVPF 164 (480)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCCCc
Confidence 33455556666656778888888876433456799999999999999999999999999999999999999987664442
Q ss_pred CC---CCcccccCCCCCCCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhcccCCeeeec
Q 022744 164 PL---LDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGKHWSLKTIG 240 (292)
Q Consensus 164 ~~---~~~~~~iPg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~~~~v~~VG 240 (292)
+. .+.++.+||+|+++.+|||.++...+.+..+++.+.+ ..+...+++|||+|||+|||+++++++++..|+|+||
T Consensus 165 ~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~v~~iG 243 (480)
T PLN02555 165 PTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILG-QYKNLDKPFCILIDTFQELEKEIIDYMSKLCPIKPVG 243 (480)
T ss_pred ccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHH-HHHhcccCCEEEEEchHHHhHHHHHHHhhCCCEEEeC
Confidence 21 1234679999999999999877543334445666777 7778889999999999999999999998766899999
Q ss_pred cCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 241 PTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 241 Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
||++... . .+...+.++|+. +++|++|||+|+++|||||||||++
T Consensus 244 Pl~~~~~-~----~~~~~~~~~~~~-~~~~~~wLd~~~~~sVvyvsfGS~~ 288 (480)
T PLN02555 244 PLFKMAK-T----PNSDVKGDISKP-ADDCIEWLDSKPPSSVVYISFGTVV 288 (480)
T ss_pred cccCccc-c----cccccccccccc-chhHHHHHhCCCCCceeEEEecccc
Confidence 9976421 0 001111223332 4789999999999999999999975
No 3
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=6.5e-52 Score=391.46 Aligned_cols=265 Identities=28% Similarity=0.505 Sum_probs=199.6
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHhh-CCCEEEEEeCcccc-cccccCCCCCCCCeeEEEccCCCCCCCCCC-ccCHHH
Q 022744 13 RVHCLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFIS-KSLHRDSSSPSTSISLEAISDGYDEGGSAQ-TEGVEA 89 (292)
Q Consensus 13 ~~hvv~~p~p~~GH~~P~l~La~~La~-rG~~VT~itt~~~~-~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~-~~~~~~ 89 (292)
++|||++|||++||+|||++|||+|++ +|+.|||++|+.+. .++.+. ....++|+|+.+++|+|+ +.+. ..+...
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~-~~~~~~i~~~~i~dglp~-g~~~~~~~~~~ 80 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN-HNNVENLSFLTFSDGFDD-GVISNTDDVQN 80 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc-CCCCCCEEEEEcCCCCCC-ccccccccHHH
Confidence 569999999999999999999999996 79999999999752 222111 011236999999998887 4322 334545
Q ss_pred HHHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHhcCCCCCCCCCcc
Q 022744 90 YLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGLLKLPLLDSQ 169 (292)
Q Consensus 90 ~~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~ 169 (292)
.+..+.+.+.+.++++++++...++|++|||+|.+++|+.++|+++|||+++|||++|+++++++++..+. +..
T Consensus 81 ~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~------~~~ 154 (455)
T PLN02152 81 RLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN------NSV 154 (455)
T ss_pred HHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC------CCe
Confidence 55566667788999999886533457899999999999999999999999999999999999998876432 234
Q ss_pred cccCCCCCCCCCCCCCcccCCCCchhHHHHHHHHHhhccC--CCCEEEEcchHHhhHhHHHHhcccCCeeeeccCCCCcc
Q 022744 170 LLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNID--KADWVLCNTFYELEKEVAQWLGKHWSLKTIGPTIPSMY 247 (292)
Q Consensus 170 ~~iPg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vlvNtf~eLE~~~~~~l~~~~~v~~VGPl~~~~~ 247 (292)
+.+||+|+++.+|||.++...+....+.+.+.+ ..+..+ .++|||+|||+|||+++++++++ .|+|+||||++...
T Consensus 155 ~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~~v~~VGPL~~~~~ 232 (455)
T PLN02152 155 FEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQE-LMEFLKEESNPKILVNTFDSLEPEFLTAIPN-IEMVAVGPLLPAEI 232 (455)
T ss_pred eecCCCCCCchHHCchhhcCCCCchhHHHHHHH-HHHHhhhccCCEEEEeChHHhhHHHHHhhhc-CCEEEEcccCcccc
Confidence 579999999999999977543333334455555 555443 36799999999999999999976 48999999986421
Q ss_pred ccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 248 LDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
.+.. ....+.+++. ++++|++|||+|+++|||||||||++
T Consensus 233 ~~~~---~~~~~~~~~~-~~~~~~~wLd~~~~~sVvyvsfGS~~ 272 (455)
T PLN02152 233 FTGS---ESGKDLSVRD-QSSSYTLWLDSKTESSVIYVSFGTMV 272 (455)
T ss_pred cccc---ccCccccccc-cchHHHHHhhCCCCCceEEEEecccc
Confidence 1110 0000011222 24689999999999999999999975
No 4
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1e-50 Score=383.81 Aligned_cols=260 Identities=25% Similarity=0.361 Sum_probs=194.6
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHHH
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYL 91 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 91 (292)
+++|||++|||+|||+|||++||++|++||+.|||++|+.+..+.. ....+|+++.+|+|+|+.+.+.. ....++
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~----~~~~~i~~~~ip~glp~~~~~~~-~~~~~~ 80 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPS----DDFTDFQFVTIPESLPESDFKNL-GPIEFL 80 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccc----cCCCCeEEEeCCCCCCccccccc-CHHHHH
Confidence 5789999999999999999999999999999999999998753211 11246999999999886222222 233455
Q ss_pred HHHHHhCcHHHHHHHHHhhc-CCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHhc----CC-CCCCC
Q 022744 92 ERFWQIGPRSLCELVENMNG-SGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNK----GL-LKLPL 165 (292)
Q Consensus 92 ~~~~~~~~~~l~~~l~~l~~-~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~----~~-~~~~~ 165 (292)
..+.+.+...++++++++.. ..+|++|||+|+|++|+.++|+++|||++.||+++|+++++++++.. +. .+.+.
T Consensus 81 ~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
T PLN02410 81 HKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKE 160 (451)
T ss_pred HHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccc
Confidence 55555667788888887632 33567999999999999999999999999999999999988887531 21 23222
Q ss_pred --CCcccccCCCCCCCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhcccC--Ceeeecc
Q 022744 166 --LDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGKHW--SLKTIGP 241 (292)
Q Consensus 166 --~~~~~~iPg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~~~--~v~~VGP 241 (292)
++..+.+||+|+++.+|+|...... ...+...+.. ....++|+|||+|||+|||+++++++++.. |+|+|||
T Consensus 161 ~~~~~~~~iPg~~~~~~~dlp~~~~~~--~~~~~~~~~~--~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGp 236 (451)
T PLN02410 161 PKGQQNELVPEFHPLRCKDFPVSHWAS--LESIMELYRN--TVDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGP 236 (451)
T ss_pred cccCccccCCCCCCCChHHCcchhcCC--cHHHHHHHHH--HhhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecc
Confidence 1233468999999999999754322 2223333332 234678999999999999999999998753 7999999
Q ss_pred CCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 242 TIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
|++... . +.++++ ++++|++|||+|+++|||||||||++
T Consensus 237 l~~~~~-------~---~~~~~~-~~~~~~~wLd~~~~~sVvyvsfGS~~ 275 (451)
T PLN02410 237 LHLVAS-------A---PTSLLE-ENKSCIEWLNKQKKNSVIFVSLGSLA 275 (451)
T ss_pred cccccC-------C---Cccccc-cchHHHHHHHhCCCCcEEEEEccccc
Confidence 975310 0 011222 24679999999999999999999985
No 5
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.2e-50 Score=385.86 Aligned_cols=270 Identities=20% Similarity=0.235 Sum_probs=193.8
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEcc----CCCCCCCCCCccCH
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS----DGYDEGGSAQTEGV 87 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~~~~~~~~ 87 (292)
+++|||++|||+|||+|||++|||+|+++|++|||++|+.+.+++.+... ..++|+++.+| +++|+ |.++..++
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~-~~~~i~~~~lp~P~~~~lPd-G~~~~~~~ 85 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS-KHPSIETLVLPFPSHPSIPS-GVENVKDL 85 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc-cCCCeeEEeCCCCCcCCCCC-CCcChhhc
Confidence 47999999999999999999999999999999999999998876654321 12468887764 25665 54433232
Q ss_pred H-H---HHHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHhcCCCC-
Q 022744 88 E-A---YLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGLLK- 162 (292)
Q Consensus 88 ~-~---~~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~- 162 (292)
. . .+......+.+.+++++++. ..+++|||+|.|++|+.++|+++|||++.|||++|+++++|+++..+...
T Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~l~~~---~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~ 162 (477)
T PLN02863 86 PPSGFPLMIHALGELYAPLLSWFRSH---PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTK 162 (477)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhC---CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccc
Confidence 1 1 12222223445556655543 24569999999999999999999999999999999999999998653211
Q ss_pred --CCCCCccc---ccCCCCCCCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhccc---C
Q 022744 163 --LPLLDSQL---LLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGKH---W 234 (292)
Q Consensus 163 --~~~~~~~~---~iPg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~~---~ 234 (292)
..+.++.+ .+||+|.++.+|||.+++.........+.+.+ ..+..+.++||++|||+|||+++++++++. .
T Consensus 163 ~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~ 241 (477)
T PLN02863 163 INPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKD-SFRANIASWGLVVNSFTELEGIYLEHLKKELGHD 241 (477)
T ss_pred ccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHH-HHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCC
Confidence 01111223 47999999999999876532222334455555 666677889999999999999999999874 3
Q ss_pred CeeeeccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 235 SLKTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 235 ~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
|+|+||||++....+.. ....+.+.+. ++++|++|||+|+++|||||||||.+
T Consensus 242 ~v~~IGPL~~~~~~~~~---~~~~~~~~~~-~~~~~~~WLd~~~~~svVyvsfGS~~ 294 (477)
T PLN02863 242 RVWAVGPILPLSGEKSG---LMERGGPSSV-SVDDVMTWLDTCEDHKVVYVCFGSQV 294 (477)
T ss_pred CeEEeCCCccccccccc---ccccCCcccc-cHHHHHHHHhcCCCCceEEEEeecee
Confidence 79999999864211000 0011111111 24679999999999999999999975
No 6
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.9e-50 Score=384.45 Aligned_cols=271 Identities=23% Similarity=0.351 Sum_probs=189.3
Q ss_pred cccCC-CceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCC--C-CCCCeeEEEcc-----CCCCC
Q 022744 8 AASCK-RVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSS--S-PSTSISLEAIS-----DGYDE 78 (292)
Q Consensus 8 ~~~~~-~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~--~-~~~~i~~~~l~-----~~~~~ 78 (292)
+.|+. +.|||++|||+|||+|||++||++|++||+.|||++|+.+..++.+... . ....|+|+.+| +|+|+
T Consensus 2 ~~~~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~ 81 (491)
T PLN02534 2 AVSKAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPI 81 (491)
T ss_pred CcccCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCC
Confidence 34444 4799999999999999999999999999999999999998765543221 0 11249999987 58876
Q ss_pred CCCCCccCHH--HHHHHHHH---hCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHH
Q 022744 79 GGSAQTEGVE--AYLERFWQ---IGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIY 153 (292)
Q Consensus 79 ~~~~~~~~~~--~~~~~~~~---~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~ 153 (292)
+.++..++. .++..+.. .+.+.+++++++. .+|++|||+|.|++|+.++|+++|||+++||++++++++++
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~ 157 (491)
T PLN02534 82 -GCENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSS 157 (491)
T ss_pred -CccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHH
Confidence 443322221 23322222 2345555555532 24679999999999999999999999999999999999887
Q ss_pred HHHh--cCCCCCCCCCcccccCCCCC---CCCCCCCCcccCCCCchhHHHHHHHHHhh-ccCCCCEEEEcchHHhhHhHH
Q 022744 154 YHVN--KGLLKLPLLDSQLLLPGMPP---LEPQDMPSFVYDLGSYPAVSDMVVKYQFD-NIDKADWVLCNTFYELEKEVA 227 (292)
Q Consensus 154 ~~~~--~~~~~~~~~~~~~~iPg~p~---~~~~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNtf~eLE~~~~ 227 (292)
+++. .+..+...++.++.+||+|+ ++..|||..+..... . +.+.. ... ..+.++|||+|||+|||++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~---~-~~~~~-~~~~~~~~a~~vlvNTf~eLE~~~l 232 (491)
T PLN02534 158 HNIRLHNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPD---L-DDVRN-KMREAESTAFGVVVNSFNELEHGCA 232 (491)
T ss_pred HHHHHhcccccCCCCCceeecCCCCccccccHHHCChhhcCccc---H-HHHHH-HHHhhcccCCEEEEecHHHhhHHHH
Confidence 6553 22222223345677999984 888999976543211 1 22333 223 345688999999999999999
Q ss_pred HHhcccC--CeeeeccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 228 QWLGKHW--SLKTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 228 ~~l~~~~--~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
+++++.. |+|+||||++...... +...+++.+..++++|++|||+|+++|||||||||+.
T Consensus 233 ~~l~~~~~~~v~~VGPL~~~~~~~~----~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~ 294 (491)
T PLN02534 233 EAYEKAIKKKVWCVGPVSLCNKRNL----DKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLC 294 (491)
T ss_pred HHHHhhcCCcEEEECcccccccccc----cccccCCccccchHHHHHHHhcCCCCceEEEEecccc
Confidence 9998753 7999999975321000 0000011111134679999999999999999999985
No 7
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2e-49 Score=375.52 Aligned_cols=267 Identities=22% Similarity=0.402 Sum_probs=201.1
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHH
Q 022744 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAY 90 (292)
Q Consensus 11 ~~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 90 (292)
++++|||++|||+|||+|||++||++|+++|++|||+||+.+.+++.+... ..++|+++.+|+++++ +.. .++..+
T Consensus 4 ~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~-~~~~i~~v~lp~g~~~-~~~--~~~~~l 79 (448)
T PLN02562 4 TQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD-PKLGITFMSISDGQDD-DPP--RDFFSI 79 (448)
T ss_pred CCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC-CCCCEEEEECCCCCCC-Ccc--ccHHHH
Confidence 446799999999999999999999999999999999999998766543311 1236999999987764 321 234344
Q ss_pred HHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHh----cCCCCCCC-
Q 022744 91 LERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVN----KGLLKLPL- 165 (292)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~----~~~~~~~~- 165 (292)
+..+...+.+.++++++++... +|++|||+|+|++|+.++|+++|||+++||+++++++++++++. .+.++..+
T Consensus 80 ~~a~~~~~~~~l~~ll~~l~~~-~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (448)
T PLN02562 80 ENSMENTMPPQLERLLHKLDED-GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGC 158 (448)
T ss_pred HHHHHHhchHHHHHHHHHhcCC-CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccc
Confidence 4555555778888888876432 46799999999999999999999999999999999998887763 22222111
Q ss_pred --CCccc-ccCCCCCCCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhcc------cCCe
Q 022744 166 --LDSQL-LLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGK------HWSL 236 (292)
Q Consensus 166 --~~~~~-~iPg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~------~~~v 236 (292)
..+++ .+||+|+++.+|+|.++.........++.+.+ ..+...+++||++|||+|||+++++++++ ..++
T Consensus 159 ~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v 237 (448)
T PLN02562 159 PRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTR-TLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQI 237 (448)
T ss_pred cccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHH-HHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCE
Confidence 11233 68999999999999877543323334566777 77888899999999999999999998763 1369
Q ss_pred eeeccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 237 KTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 237 ~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
|+||||++... . .. .+.+.+.. +.+|++|||+|+++|||||||||..
T Consensus 238 ~~iGpl~~~~~--~---~~--~~~~~~~~-~~~c~~wLd~~~~~svvyvsfGS~~ 284 (448)
T PLN02562 238 LQIGPLHNQEA--T---TI--TKPSFWEE-DMSCLGWLQEQKPNSVIYISFGSWV 284 (448)
T ss_pred EEecCcccccc--c---cc--CCCccccc-hHHHHHHHhcCCCCceEEEEecccc
Confidence 99999976320 0 00 01122333 4789999999999999999999964
No 8
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=4.3e-49 Score=371.90 Aligned_cols=265 Identities=19% Similarity=0.261 Sum_probs=191.3
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCC--CEEE--EEeCcccccccccC---CCCCCCCeeEEEccCCCCCC-CCCC
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKG--LKVT--LVTTYFISKSLHRD---SSSPSTSISLEAISDGYDEG-GSAQ 83 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG--~~VT--~itt~~~~~~~~~~---~~~~~~~i~~~~l~~~~~~~-~~~~ 83 (292)
.+-|||++|||+|||+|||++|||+|++|| +.|| +++++.+...+.+. .....++|+++.+|++.+.+ +.+.
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccc
Confidence 357999999999999999999999999998 4455 45565543322111 00112469999999765421 2111
Q ss_pred ccCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHhcCC--C
Q 022744 84 TEGVEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGL--L 161 (292)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~--~ 161 (292)
..+....+..+...+...+++.++++.. .+|++|||+|+|++|+.++|+++|||+++|||++|+.+++++|++... .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 160 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSR-NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETT 160 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCC-CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccc
Confidence 1233333333444566778888887632 246799999999999999999999999999999999999999875322 1
Q ss_pred CCC--CCCcccccCCCCCCCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhccc---CCe
Q 022744 162 KLP--LLDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGKH---WSL 236 (292)
Q Consensus 162 ~~~--~~~~~~~iPg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~~---~~v 236 (292)
+.. .+...+.+||+|+++.+|||.++.+.+ ...+..+.+ ..+...++++||+|||+|||++++++|++. .|+
T Consensus 161 ~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~~~-~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v 237 (451)
T PLN03004 161 PGKNLKDIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVFIM-FGKQLSKSSGIIINTFDALENRAIKAITEELCFRNI 237 (451)
T ss_pred cccccccCCeecCCCCCCCChHHCchhhcCCc--hHHHHHHHH-HHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCE
Confidence 111 111336789999999999998776432 234456666 677788899999999999999999999764 279
Q ss_pred eeeccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 237 KTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 237 ~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
|+||||++... .. . +. . .++++|++|||+|+++|||||||||.+
T Consensus 238 ~~vGPl~~~~~------~~-~-~~-~--~~~~~c~~wLd~~~~~sVvyvsfGS~~ 281 (451)
T PLN03004 238 YPIGPLIVNGR------IE-D-RN-D--NKAVSCLNWLDSQPEKSVVFLCFGSLG 281 (451)
T ss_pred EEEeeeccCcc------cc-c-cc-c--chhhHHHHHHHhCCCCceEEEEecccc
Confidence 99999975310 00 0 11 1 124679999999999999999999974
No 9
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=4.6e-49 Score=372.03 Aligned_cols=258 Identities=17% Similarity=0.236 Sum_probs=189.6
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhC-CCEEEEEeCcccccccc--cCCCC--CCCCeeEEEccCCCCCCCC-CCcc
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHK-GLKVTLVTTYFISKSLH--RDSSS--PSTSISLEAISDGYDEGGS-AQTE 85 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~r-G~~VT~itt~~~~~~~~--~~~~~--~~~~i~~~~l~~~~~~~~~-~~~~ 85 (292)
.++||+++|||+|||+|||++||++|+++ |+.|||++|..+..++. ..... ..++|+++.+|++..+ ++ ....
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~l~~~~~ 80 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVD-NLVEPDA 80 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccc-cCCCCCc
Confidence 46799999999999999999999999987 99999999887654331 11111 1125999999853222 22 1111
Q ss_pred CHHHHHHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCC-cEEEeccchHHHHHHHHHhc--CCCC
Q 022744 86 GVEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLV-GAAFLTQSCVVDCIYYHVNK--GLLK 162 (292)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP-~v~f~~~~a~~~~~~~~~~~--~~~~ 162 (292)
+....+....+.+.+.++++++++. ++++|||+|.|++|+.++|+++||| +++|++++++.+++++|++. +..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~ 157 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMK---RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVE 157 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcC---CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccc
Confidence 2322222334456778888888763 3569999999999999999999999 69999999998888888742 2111
Q ss_pred C--CCCCcccccCCCCCCCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhccc-------
Q 022744 163 L--PLLDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGKH------- 233 (292)
Q Consensus 163 ~--~~~~~~~~iPg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~~------- 233 (292)
. ...++++.+||+|+++.+|+|..+.++. ...+..+.+ ..++..+|+|||+|||+|||+++++++++.
T Consensus 158 ~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~--~~~~~~~~~-~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~ 234 (470)
T PLN03015 158 GEYVDIKEPLKIPGCKPVGPKELMETMLDRS--DQQYKECVR-SGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVM 234 (470)
T ss_pred cccCCCCCeeeCCCCCCCChHHCCHhhcCCC--cHHHHHHHH-HHHhcccCCEEEEechHHHhHHHHHHHHhhccccccc
Confidence 1 0112456799999999999998665432 222344446 667788999999999999999999999764
Q ss_pred -CCeeeeccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 234 -WSLKTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 234 -~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
.|+|+||||++.. . . .+++++|++|||+|+++|||||||||.+
T Consensus 235 ~~~v~~VGPl~~~~--------~-~------~~~~~~~~~WLd~~~~~sVvyvsFGS~~ 278 (470)
T PLN03015 235 KVPVYPIGPIVRTN--------V-H------VEKRNSIFEWLDKQGERSVVYVCLGSGG 278 (470)
T ss_pred CCceEEecCCCCCc--------c-c------ccchHHHHHHHHhCCCCCEEEEECCcCC
Confidence 4799999997521 0 0 1123579999999999999999999986
No 10
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=3.6e-49 Score=374.43 Aligned_cols=254 Identities=20% Similarity=0.262 Sum_probs=189.7
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHh-hCCCEEEEEeCcccccccccCCCCCCCCeeEEEccC----CCCCCCCCCccC
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLE-HKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD----GYDEGGSAQTEG 86 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La-~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~----~~~~~~~~~~~~ 86 (292)
.++|||++|||+|||++||++|||+|+ ++|++|||++|+.+.+++.+.. ...++|+++.+|. ++|+.+ .+
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~-~~~~~i~~~~lp~p~~~glp~~~----~~ 78 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKF-LNSTGVDIVGLPSPDISGLVDPS----AH 78 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcc-ccCCCceEEECCCccccCCCCCC----cc
Confidence 468999999999999999999999998 7999999999998875543221 0123699999884 443211 12
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHhc--CCCCC-
Q 022744 87 VEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNK--GLLKL- 163 (292)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~--~~~~~- 163 (292)
....+......+.+.++++++++ ..+++|||+|+|++|+.++|+++|||+++||+++|+.+++++++.. +....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~---~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~ 155 (481)
T PLN02992 79 VVTKIGVIMREAVPTLRSKIAEM---HQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEE 155 (481)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhc---CCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccc
Confidence 22222233334556777777764 1356999999999999999999999999999999999988877642 11111
Q ss_pred -CCCCcccccCCCCCCCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhccc--------C
Q 022744 164 -PLLDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGKH--------W 234 (292)
Q Consensus 164 -~~~~~~~~iPg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~~--------~ 234 (292)
...+..+.+||+|+++..|+|..+.+++. ..+..+.+ ..+...+|+|||+|||+|||+++++++++. .
T Consensus 156 ~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~--~~~~~~~~-~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~ 232 (481)
T PLN02992 156 HTVQRKPLAMPGCEPVRFEDTLDAYLVPDE--PVYRDFVR-HGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARV 232 (481)
T ss_pred cccCCCCcccCCCCccCHHHhhHhhcCCCc--HHHHHHHH-HHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCC
Confidence 01123467999999999999975544322 24556666 777888999999999999999999999752 3
Q ss_pred CeeeeccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 235 SLKTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 235 ~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
|+|+||||++.. ... .++++|++|||+|+++|||||||||.+
T Consensus 233 ~v~~VGPl~~~~--------~~~-------~~~~~c~~wLd~~~~~sVvyvsfGS~~ 274 (481)
T PLN02992 233 PVYPIGPLCRPI--------QSS-------KTDHPVLDWLNKQPNESVLYISFGSGG 274 (481)
T ss_pred ceEEecCccCCc--------CCC-------cchHHHHHHHHcCCCCceEEEeecccc
Confidence 799999997641 000 124679999999999999999999975
No 11
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1e-48 Score=371.23 Aligned_cols=270 Identities=27% Similarity=0.495 Sum_probs=196.1
Q ss_pred cCCCceEEEEeCCCccChHHHHHHHHH--HhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCCCCCCccCH
Q 022744 10 SCKRVHCLVLSYPAQGHINPLLQFAKR--LEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGV 87 (292)
Q Consensus 10 ~~~~~hvv~~p~p~~GH~~P~l~La~~--La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 87 (292)
..++.|||++|||++||+|||++||++ |++||++|||++|+.+.+++++. ......+++..+|+|+|+ +.+ .+.
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~-~~~~~~~~~~~~~~glp~-~~~--~~~ 80 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTV-EKPRRPVDLVFFSDGLPK-DDP--RAP 80 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccc-cCCCCceEEEECCCCCCC-Ccc--cCH
Confidence 444689999999999999999999999 56999999999999987665432 112346888888888887 432 233
Q ss_pred HHHHHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHhcC--CCCCCC
Q 022744 88 EAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKG--LLKLPL 165 (292)
Q Consensus 88 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~--~~~~~~ 165 (292)
..++..+.+.+.+.+++++++ .++||||+|.+++|+.++|+++|||+++||++++.++++++++... .++...
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~-----~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~ 155 (456)
T PLN02210 81 ETLLKSLNKVGAKNLSKIIEE-----KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLE 155 (456)
T ss_pred HHHHHHHHHhhhHHHHHHHhc-----CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCccc
Confidence 345555554444555555543 3579999999999999999999999999999999999988876432 222111
Q ss_pred C-CcccccCCCCCCCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhcccCCeeeeccCCC
Q 022744 166 L-DSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGKHWSLKTIGPTIP 244 (292)
Q Consensus 166 ~-~~~~~iPg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~~~~v~~VGPl~~ 244 (292)
+ +..+.+||+|+++.+|+|..+.+... ..+...+.+ ..+...++++|++|||+|||+++++++++..|+|+|||+++
T Consensus 156 ~~~~~~~~Pgl~~~~~~dl~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~VGPl~~ 233 (456)
T PLN02210 156 DLNQTVELPALPLLEVRDLPSFMLPSGG-AHFNNLMAE-FADCLRYVKWVLVNSFYELESEIIESMADLKPVIPIGPLVS 233 (456)
T ss_pred ccCCeeeCCCCCCCChhhCChhhhcCCc-hHHHHHHHH-HHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEEcccCc
Confidence 1 23457899999999999987764322 222233334 44567789999999999999999999987668999999986
Q ss_pred Cccccccc-cccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 245 SMYLDKQI-EEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 245 ~~~~~~~~-~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
........ ......+.++|.+ +++|++|||+|+++|||||||||..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wld~~~~~svvyvsfGS~~ 280 (456)
T PLN02210 234 PFLLGDDEEETLDGKNLDMCKS-DDCCMEWLDKQARSSVVYISFGSML 280 (456)
T ss_pred hhhcCccccccccccccccccc-chHHHHHHhCCCCCceEEEEecccc
Confidence 42111100 0001111234553 5789999999999999999999975
No 12
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.1e-49 Score=372.97 Aligned_cols=264 Identities=21% Similarity=0.286 Sum_probs=186.2
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEcc----CCCCCCCCCCccCH
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS----DGYDEGGSAQTEGV 87 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~~~~~~~~ 87 (292)
.++|||++|||+|||+|||++|||+|++||++|||++|+.+..++.+.......+|+++.+| +|+|+ +.++..++
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~-~~~~~~~~ 83 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPS-SAESSTDV 83 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCC-Cccccccc
Confidence 35799999999999999999999999999999999999998766543211112369999988 67776 43333333
Q ss_pred H----HHHHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHh----cC
Q 022744 88 E----AYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVN----KG 159 (292)
Q Consensus 88 ~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~----~~ 159 (292)
. .++....+.+.+.++++++++ +++|||+|.|++|+.++|+++|||+++||+++++.+++++++. .|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~ 158 (472)
T PLN02670 84 PYTKQQLLKKAFDLLEPPLTTFLETS-----KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGG 158 (472)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhC-----CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcc
Confidence 2 122233334445555555432 4699999999999999999999999999999999999887552 23
Q ss_pred CCCCCCCCccc-ccCCCCC------CCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhcc
Q 022744 160 LLKLPLLDSQL-LLPGMPP------LEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGK 232 (292)
Q Consensus 160 ~~~~~~~~~~~-~iPg~p~------~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~ 232 (292)
.++.. ++.+ .+||+++ ++..|+|.++.+..........+.+ ......+++|||+|||+|||+++++++++
T Consensus 159 ~~~~~--~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~~gvlvNTf~eLE~~~l~~l~~ 235 (472)
T PLN02670 159 DLRST--AEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVR-FGFAIGGSDVVIIRSSPEFEPEWFDLLSD 235 (472)
T ss_pred cCCCc--cccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHH-HHhhcccCCEEEEeCHHHHhHHHHHHHHH
Confidence 33221 2223 3666522 5667999876532222222334445 55667889999999999999999999987
Q ss_pred c--CCeeeeccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 233 H--WSLKTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 233 ~--~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
. .|+|+||||++... ... .+ . ..+. ..+++|++|||+|+++|||||||||++
T Consensus 236 ~~~~~v~~VGPl~~~~~-~~~--~~-~-~~~~--~~~~~~~~wLd~~~~~sVvyvsfGS~~ 289 (472)
T PLN02670 236 LYRKPIIPIGFLPPVIE-DDE--ED-D-TIDV--KGWVRIKEWLDKQRVNSVVYVALGTEA 289 (472)
T ss_pred hhCCCeEEEecCCcccc-ccc--cc-c-cccc--chhHHHHHHHhcCCCCceEEEEecccc
Confidence 5 37999999976411 000 00 0 0000 013679999999999999999999985
No 13
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.2e-48 Score=373.05 Aligned_cols=259 Identities=19% Similarity=0.302 Sum_probs=192.7
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCC----CEEEEEeCccccc----ccccCCC---CCCCCeeEEEccCCCCCCC
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKG----LKVTLVTTYFISK----SLHRDSS---SPSTSISLEAISDGYDEGG 80 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG----~~VT~itt~~~~~----~~~~~~~---~~~~~i~~~~l~~~~~~~~ 80 (292)
.++|||++|||+|||++||++||++|++|| +.|||++|+.+.. ++.+... ....+|+++.+|++.++.+
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 578999999999999999999999999997 8999999876532 2222110 1112599999997532212
Q ss_pred CCCccCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHhc--
Q 022744 81 SAQTEGVEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNK-- 158 (292)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~-- 158 (292)
.+ +...++..+...+.+.++++++++ .+|++|||+|.|++|+.++|+++|||++.|||++|+++++++|++.
T Consensus 82 ~e---~~~~~~~~~~~~~~~~l~~~L~~l---~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 82 AA---GVEEFISRYIQLHAPHVRAAIAGL---SCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred cc---cHHHHHHHHHHhhhHHHHHHHHhc---CCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 22 333444445556677788887765 2467999999999999999999999999999999999999998753
Q ss_pred CCCC--CCCCCcccccCCCCCCCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhccc---
Q 022744 159 GLLK--LPLLDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGKH--- 233 (292)
Q Consensus 159 ~~~~--~~~~~~~~~iPg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~~--- 233 (292)
+..+ .++.+.++.+||+|+++.+|||.++.+.+. ..++.+.. ..++..+|+|||+|||+|||+++++++++.
T Consensus 156 ~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~--~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 232 (480)
T PLN00164 156 EEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKS--PNYAWFVY-HGRRFMEAAGIIVNTAAELEPGVLAAIADGRCT 232 (480)
T ss_pred ccccCcccccCcceecCCCCCCChHHCCchhcCCCc--HHHHHHHH-HHHhhhhcCEEEEechHHhhHHHHHHHHhcccc
Confidence 2221 111123467999999999999987754321 22345555 666788899999999999999999999763
Q ss_pred -----CCeeeeccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 234 -----WSLKTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 234 -----~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
.|+|+||||++.. +. . . .+. ++++|++|||+|+++|||||||||.+
T Consensus 233 ~~~~~~~v~~vGPl~~~~--~~--~-~------~~~-~~~~~~~wLd~~~~~svvyvsfGS~~ 283 (480)
T PLN00164 233 PGRPAPTVYPIGPVISLA--FT--P-P------AEQ-PPHECVRWLDAQPPASVVFLCFGSMG 283 (480)
T ss_pred ccCCCCceEEeCCCcccc--cc--C-C------Ccc-chHHHHHHHHhCCCCceEEEEecccc
Confidence 2799999997531 00 0 0 011 34789999999999999999999974
No 14
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.9e-48 Score=366.77 Aligned_cols=250 Identities=22% Similarity=0.337 Sum_probs=179.5
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCC-CCCeeEEEcc--CCCCCCCCCCccCHH
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSP-STSISLEAIS--DGYDEGGSAQTEGVE 88 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~-~~~i~~~~l~--~~~~~~~~~~~~~~~ 88 (292)
.++|||++|||+|||+|||++||++|++||++|||+||+.+..++.+..... ...++++.+| +|+|+ +.+...++.
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~-g~e~~~~~~ 82 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPV-GTETVSEIP 82 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCC-cccccccCC
Confidence 3689999999999999999999999999999999999999876554320011 1237777777 67776 433322222
Q ss_pred -HHHHHHH---HhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHhcCCCCCC
Q 022744 89 -AYLERFW---QIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGLLKLP 164 (292)
Q Consensus 89 -~~~~~~~---~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~ 164 (292)
..+..+. ..+.+.++++++++ +++|||+|+ ++|+.++|+++|||++.||+++|++++++++ ..+.+
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~~~-----~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~~~~--- 152 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVRAV-----EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PGGEL--- 152 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHhC-----CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-ccccC---
Confidence 1122222 23345566666542 459999995 8999999999999999999999999988864 22211
Q ss_pred CCCcccccCCCCC----CCCCCCCCccc--CCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhccc--CCe
Q 022744 165 LLDSQLLLPGMPP----LEPQDMPSFVY--DLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGKH--WSL 236 (292)
Q Consensus 165 ~~~~~~~iPg~p~----~~~~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~~--~~v 236 (292)
...+||+|. ++.+|+|.+.. .......+..++.+ ..+..++++|||+|||+|||+++++++++. .|+
T Consensus 153 ----~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v 227 (453)
T PLN02764 153 ----GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLER-VTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKV 227 (453)
T ss_pred ----CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHH-HHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcE
Confidence 123589983 77888887422 11122223344444 546788899999999999999999999775 369
Q ss_pred eeeccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 237 KTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 237 ~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
|+||||++.. +.. . .++++|++|||+|+++|||||||||++
T Consensus 228 ~~VGPL~~~~--------~~~-~-----~~~~~cl~WLD~q~~~sVvyvsfGS~~ 268 (453)
T PLN02764 228 LLTGPVFPEP--------DKT-R-----ELEERWVKWLSGYEPDSVVFCALGSQV 268 (453)
T ss_pred EEeccCccCc--------ccc-c-----cchhHHHHHHhCCCCCceEEEeecccc
Confidence 9999997641 000 0 124689999999999999999999985
No 15
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-47 Score=363.20 Aligned_cols=266 Identities=20% Similarity=0.308 Sum_probs=187.6
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCC--CEEEEEeCcccc-cccccCCC---CCCCCeeEEEccCCCCCCCCCCcc
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKG--LKVTLVTTYFIS-KSLHRDSS---SPSTSISLEAISDGYDEGGSAQTE 85 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG--~~VT~itt~~~~-~~~~~~~~---~~~~~i~~~~l~~~~~~~~~~~~~ 85 (292)
.++|||++|||+|||+|||++||++|++|| +.|||++|+.+. ..+....+ ...++|+|+.+|++.+........
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 81 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQ 81 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcccccc
Confidence 457999999999999999999999999998 999999998765 22221111 112469999999643210111122
Q ss_pred CHHHHHHHHHHhCcH----HHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHhcCCC
Q 022744 86 GVEAYLERFWQIGPR----SLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGLL 161 (292)
Q Consensus 86 ~~~~~~~~~~~~~~~----~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~ 161 (292)
+....+..+.+.+.. .+++++++...+++|++|||+|.|++|+.++|+++|||+++|||++|++++++++++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~ 161 (468)
T PLN02207 82 SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHS 161 (468)
T ss_pred CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccc
Confidence 344333233334433 3444444332223467999999999999999999999999999999999999888753211
Q ss_pred C-----CCCCCcccccCCC-CCCCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhcc--c
Q 022744 162 K-----LPLLDSQLLLPGM-PPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGK--H 233 (292)
Q Consensus 162 ~-----~~~~~~~~~iPg~-p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~--~ 233 (292)
+ .+..+..+.+||+ |+++.+|+|.++.+.+. +..+.+ ..+..++++++++|||+|||.++++++++ .
T Consensus 162 ~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~----~~~~~~-~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~ 236 (468)
T PLN02207 162 KDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDG----YDAYVK-LAILFTKANGILVNSSFDIEPYSVNHFLDEQN 236 (468)
T ss_pred cccccCcCCCCCeEECCCCCCCCChHHCcchhcCCcc----HHHHHH-HHHhcccCCEEEEEchHHHhHHHHHHHHhccC
Confidence 1 1111234679999 68999999987754322 344555 66678889999999999999999999965 2
Q ss_pred C-CeeeeccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 234 W-SLKTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 234 ~-~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
. ++|+||||++... .. .. . .+.+ ++++|++|||+|+++|||||||||.+
T Consensus 237 ~p~v~~VGPl~~~~~--~~--~~-~--~~~~--~~~~~~~WLd~~~~~sVVyvSfGS~~ 286 (468)
T PLN02207 237 YPSVYAVGPIFDLKA--QP--HP-E--QDLA--RRDELMKWLDDQPEASVVFLCFGSMG 286 (468)
T ss_pred CCcEEEecCCccccc--CC--CC-c--cccc--hhhHHHHHHhcCCCCcEEEEEeccCc
Confidence 3 6999999975321 00 00 0 0111 24679999999999999999999975
No 16
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=8.9e-48 Score=363.39 Aligned_cols=249 Identities=21% Similarity=0.338 Sum_probs=175.0
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEc--c--CCCCCCCCCCccCH
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAI--S--DGYDEGGSAQTEGV 87 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l--~--~~~~~~~~~~~~~~ 87 (292)
+++|||++|||++||+|||++|||+|++||++|||+||+.+..++.+.. ...++|+|+.+ | +|+|+ +.+...++
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~-~~~~~i~~~~i~lP~~dGLP~-g~e~~~~l 80 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN-LFPDSIVFEPLTLPPVDGLPF-GAETASDL 80 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc-cCCCceEEEEecCCCcCCCCC-cccccccc
Confidence 4789999999999999999999999999999999999998876654321 11235888655 3 57776 43332233
Q ss_pred HHH-HHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHhcCCCCCCCC
Q 022744 88 EAY-LERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGLLKLPLL 166 (292)
Q Consensus 88 ~~~-~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~~ 166 (292)
... ...+... .+.+.+.++++.++ .++||||+|+ ++|+.++|+++|||++.||++++++++++++....
T Consensus 81 ~~~~~~~~~~a-~~~l~~~l~~~L~~-~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~------- 150 (446)
T PLN00414 81 PNSTKKPIFDA-MDLLRDQIEAKVRA-LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE------- 150 (446)
T ss_pred hhhHHHHHHHH-HHHHHHHHHHHHhc-CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh-------
Confidence 211 1122222 23444445444333 2469999995 89999999999999999999999999988773210
Q ss_pred CcccccCCCCC----CCCCCC--CCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhcccC--Ceee
Q 022744 167 DSQLLLPGMPP----LEPQDM--PSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGKHW--SLKT 238 (292)
Q Consensus 167 ~~~~~iPg~p~----~~~~~l--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~~~--~v~~ 238 (292)
....+||+|. ++..++ |.++.. ..+.+.+ ..+...+|+||++|||+|||+++++++++.. |+|+
T Consensus 151 -~~~~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~ 222 (446)
T PLN00414 151 -LGFPPPDYPLSKVALRGHDANVCSLFAN------SHELFGL-ITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLL 222 (446)
T ss_pred -cCCCCCCCCCCcCcCchhhcccchhhcc------cHHHHHH-HHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEE
Confidence 0123578874 444443 333321 1234444 5567788999999999999999999998753 7999
Q ss_pred eccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCcccC
Q 022744 239 IGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQH 292 (292)
Q Consensus 239 VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~~ 292 (292)
||||++... ... + ..++++|++|||+|+++|||||||||+++
T Consensus 223 VGPl~~~~~-------~~~-~----~~~~~~~~~WLD~q~~~sVvyvsfGS~~~ 264 (446)
T PLN00414 223 TGPMLPEPQ-------NKS-G----KPLEDRWNHWLNGFEPGSVVFCAFGTQFF 264 (446)
T ss_pred EcccCCCcc-------ccc-C----cccHHHHHHHHhcCCCCceEEEeeccccc
Confidence 999976420 000 1 11246799999999999999999999863
No 17
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.6e-46 Score=359.09 Aligned_cols=259 Identities=19% Similarity=0.297 Sum_probs=187.8
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCC--CEEEEEeCcccccccc--c-CC---CC-CCCCeeEEEccCCCCCCCCC
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKG--LKVTLVTTYFISKSLH--R-DS---SS-PSTSISLEAISDGYDEGGSA 82 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG--~~VT~itt~~~~~~~~--~-~~---~~-~~~~i~~~~l~~~~~~~~~~ 82 (292)
++.|||++|||+|||++||++|||+|++|| +.|||++|+.+..++. . .. .. ..++|+++.+|++.+. ..
T Consensus 1 ~~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~~- 78 (481)
T PLN02554 1 MKIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQP-TT- 78 (481)
T ss_pred CceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCC-cc-
Confidence 478999999999999999999999999998 9999999998754321 0 00 00 1236999999876542 11
Q ss_pred CccCHHHHHHHHHHhCcHHHHHHHHHhhc-----CCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHh
Q 022744 83 QTEGVEAYLERFWQIGPRSLCELVENMNG-----SGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVN 157 (292)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~ 157 (292)
....+..++. .+...+++.++++.. +++|++|||+|+|++|+.++|+++|||+++|||++|+++++++|+.
T Consensus 79 ~~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~ 154 (481)
T PLN02554 79 EDPTFQSYID----NQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQ 154 (481)
T ss_pred cchHHHHHHH----HHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhh
Confidence 1112222222 234455555554421 1245799999999999999999999999999999999999999885
Q ss_pred cCC----CCCC---CCCcccccCCCC-CCCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHH
Q 022744 158 KGL----LKLP---LLDSQLLLPGMP-PLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQW 229 (292)
Q Consensus 158 ~~~----~~~~---~~~~~~~iPg~p-~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~ 229 (292)
... .+++ +.+.++.+||++ +++..|+|..+.+. .+++.+.+ ..+..++++||++|||+|||++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~----~~~~~~~~-~~~~~~~~~gvlvNt~~eLe~~~~~~ 229 (481)
T PLN02554 155 MLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK----EWLPLFLA-QARRFREMKGILVNTVAELEPQALKF 229 (481)
T ss_pred hhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH----HHHHHHHH-HHHhcccCCEEEEechHHHhHHHHHH
Confidence 321 2211 112346799995 89999999876532 24556666 77788899999999999999999999
Q ss_pred hccc----CCeeeeccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 230 LGKH----WSLKTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 230 l~~~----~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
|++. .++|+||||++... ..+ . .+ .+.+++|++|||+|+++|||||||||+.
T Consensus 230 l~~~~~~~~~v~~vGpl~~~~~-----~~~-~--~~--~~~~~~~~~wLd~~~~~svvyvsfGS~~ 285 (481)
T PLN02554 230 FSGSSGDLPPVYPVGPVLHLEN-----SGD-D--SK--DEKQSEILRWLDEQPPKSVVFLCFGSMG 285 (481)
T ss_pred HHhcccCCCCEEEeCCCccccc-----ccc-c--cc--cccchHHHHHHhcCCCCcEEEEeccccc
Confidence 9752 37999999954311 001 0 00 1124689999999999999999999974
No 18
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.6e-46 Score=358.65 Aligned_cols=265 Identities=19% Similarity=0.282 Sum_probs=185.5
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCCC---EEEEEeCccccc-----ccccCCCCCCCCeeEEEccCCCCCCCCCC
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGL---KVTLVTTYFISK-----SLHRDSSSPSTSISLEAISDGYDEGGSAQ 83 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG~---~VT~itt~~~~~-----~~~~~~~~~~~~i~~~~l~~~~~~~~~~~ 83 (292)
+++|||++|||+|||+|||++|||+|++||. .||+++|..+.. .+.+. ....++|+|+.+|++..+.+.+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~-~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSL-IASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhc-ccCCCCeEEEECCCCCCCccccc
Confidence 5789999999999999999999999999994 567766554321 11111 01224699999986532111111
Q ss_pred -ccCHHHHHHHHHHhCcHHHHHHHHHhhc----CCC-CccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHh
Q 022744 84 -TEGVEAYLERFWQIGPRSLCELVENMNG----SGV-PVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVN 157 (292)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~l~~~l~~l~~----~~~-~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~ 157 (292)
.......+..+.+.+...+++.++++.. +++ |++|||+|.|++|+.++|+++|||+++|||++|+++++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 1112122223334455677777776532 122 5799999999999999999999999999999999999998874
Q ss_pred c--CCCC--CCC--CCcccccCCCC-CCCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHh
Q 022744 158 K--GLLK--LPL--LDSQLLLPGMP-PLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWL 230 (292)
Q Consensus 158 ~--~~~~--~~~--~~~~~~iPg~p-~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l 230 (292)
. +..+ .+. .++++.+||+| +++..|+|..+.+.. .++.+.+ ..++..+++|||+|||+|||+++++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~----~~~~~~~-~~~~~~~a~~vlvNTf~eLE~~~~~~l 235 (475)
T PLN02167 161 ERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE----SYEAWVE-IAERFPEAKGILVNSFTELEPNAFDYF 235 (475)
T ss_pred HhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc----hHHHHHH-HHHhhcccCEeeeccHHHHHHHHHHHH
Confidence 3 2221 111 12346799995 799999997665432 1344555 667788899999999999999999999
Q ss_pred ccc----CCeeeeccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 231 GKH----WSLKTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 231 ~~~----~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
++. .++|+||||++.. +. ... ++++.++.+|++|||+|+++|||||||||++
T Consensus 236 ~~~~~~~p~v~~vGpl~~~~--~~---~~~----~~~~~~~~~~~~wld~~~~~svvyvsfGS~~ 291 (475)
T PLN02167 236 SRLPENYPPVYPVGPILSLK--DR---TSP----NLDSSDRDRIMRWLDDQPESSVVFLCFGSLG 291 (475)
T ss_pred HhhcccCCeeEEeccccccc--cc---cCC----CCCcchhHHHHHHHhcCCCCceEEEeecccc
Confidence 754 3699999997631 00 000 1111234679999999999999999999975
No 19
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=7.7e-46 Score=349.85 Aligned_cols=248 Identities=21% Similarity=0.345 Sum_probs=174.5
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEc--c--CCCCCCCCCCccCHH
Q 022744 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAI--S--DGYDEGGSAQTEGVE 88 (292)
Q Consensus 13 ~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l--~--~~~~~~~~~~~~~~~ 88 (292)
++|||++|||++||++||++|||+|++||++|||+||+.+.+++.+.. ....+++++.+ | +++|+ +.+...++.
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~-a~~~~i~~~~l~~p~~dgLp~-g~~~~~~l~ 81 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN-LFPDSIVFHPLTIPPVNGLPA-GAETTSDIP 81 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc-CCCCceEEEEeCCCCccCCCC-Ccccccchh
Confidence 589999999999999999999999999999999999998776654321 11235677665 3 56766 443333333
Q ss_pred HHHH-HHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHhcCCCCCCCCC
Q 022744 89 AYLE-RFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGLLKLPLLD 167 (292)
Q Consensus 89 ~~~~-~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~ 167 (292)
..+. .+.. ..+.+.+.++++.++ .++||||+| +++|+.++|+++|||+++||+++|++++ ++++..+..
T Consensus 82 ~~l~~~~~~-~~~~~~~~l~~~L~~-~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~------ 151 (442)
T PLN02208 82 ISMDNLLSE-ALDLTRDQVEAAVRA-LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKL------ 151 (442)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhh-CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCcccc------
Confidence 2221 2222 122333334443333 256999999 6899999999999999999999998765 555443221
Q ss_pred cccccCCCCC----CCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhcccC--Ceeeecc
Q 022744 168 SQLLLPGMPP----LEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGKHW--SLKTIGP 241 (292)
Q Consensus 168 ~~~~iPg~p~----~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~~~--~v~~VGP 241 (292)
...+||+|. ++..|+|.+ +. ....++.+.+.+.+...+|+||++|||+|||+++++++++.. ++|+|||
T Consensus 152 -~~~~pglp~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGp 226 (442)
T PLN02208 152 -GVPPPGYPSSKVLFRENDAHAL--AT--LSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGP 226 (442)
T ss_pred -CCCCCCCCCcccccCHHHcCcc--cc--cchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEee
Confidence 123689985 577889864 11 222334444313456778999999999999999999998753 6999999
Q ss_pred CCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 242 TIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
+.+.. +.. +..+++|++|||+|+++|||||||||..
T Consensus 227 l~~~~--------~~~------~~~~~~~~~wLd~~~~~sVvyvSfGS~~ 262 (442)
T PLN02208 227 MFPEP--------DTS------KPLEEQWSHFLSGFPPKSVVFCSLGSQI 262 (442)
T ss_pred cccCc--------CCC------CCCHHHHHHHHhcCCCCcEEEEeccccc
Confidence 97531 000 0124689999999999999999999985
No 20
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.3e-45 Score=348.51 Aligned_cols=266 Identities=24% Similarity=0.456 Sum_probs=199.7
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHhhC--CCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCCCCCCccCHH
Q 022744 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHK--GLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVE 88 (292)
Q Consensus 11 ~~~~hvv~~p~p~~GH~~P~l~La~~La~r--G~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 88 (292)
..++||+++|||++||+|||++||++|++| ||+|||++|+.+.+++.+.. ..++|+|+.+|+++|+ +.+...+..
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~--~~~gi~fv~lp~~~p~-~~~~~~~~~ 84 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP--KPDNIRFATIPNVIPS-ELVRAADFP 84 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC--CCCCEEEEECCCCCCC-ccccccCHH
Confidence 347899999999999999999999999999 99999999999877665431 1247999999987765 333233444
Q ss_pred HHHHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHHHHHHhc----CCCCCC
Q 022744 89 AYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNK----GLLKLP 164 (292)
Q Consensus 89 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~----~~~~~~ 164 (292)
.++..+.+.+...++++++++. +++||||+|.+++|+.++|+++|||++.||++++..+++++++.. +..+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~---~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (459)
T PLN02448 85 GFLEAVMTKMEAPFEQLLDRLE---PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVE 161 (459)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC---CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCc
Confidence 4455555456667778777653 467999999999999999999999999999999999988887742 222221
Q ss_pred C---CCccc-ccCCCCCCCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHHHHhccc--CCeee
Q 022744 165 L---LDSQL-LLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVAQWLGKH--WSLKT 238 (292)
Q Consensus 165 ~---~~~~~-~iPg~p~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~~~l~~~--~~v~~ 238 (292)
. .+..+ .+||+|+++..|+|.++.+. ....++.+.+ .++...++++||+|||+|||+++++++++. .|+|+
T Consensus 162 ~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~ 238 (459)
T PLN02448 162 LSESGEERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRILE-AFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYP 238 (459)
T ss_pred cccccCCccccCCCCCCCChHHCchhhcCC--chHHHHHHHH-HHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEE
Confidence 1 11223 48999999999999876543 2233456666 677788899999999999999999999875 37999
Q ss_pred eccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 239 IGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 239 VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
|||+++...... ... +... ..++.+|++|||+|+++|||||||||..
T Consensus 239 iGP~~~~~~~~~----~~~-~~~~-~~~~~~~~~wl~~~~~~~vvyvsfGs~~ 285 (459)
T PLN02448 239 IGPSIPYMELKD----NSS-SSNN-EDNEPDYFQWLDSQPEGSVLYVSLGSFL 285 (459)
T ss_pred ecCcccccccCC----Ccc-cccc-ccchhHHHHHHcCCCCCceEEEeecccc
Confidence 999976421110 000 0000 1123579999999999999999999974
No 21
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.9e-43 Score=338.14 Aligned_cols=269 Identities=22% Similarity=0.377 Sum_probs=183.2
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCC---CCCC----CeeEEEcc---CCCCCCC
Q 022744 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSS---SPST----SISLEAIS---DGYDEGG 80 (292)
Q Consensus 11 ~~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~---~~~~----~i~~~~l~---~~~~~~~ 80 (292)
+++.|||++|+|++||+||+++||++|++||++|||++|+.+.+++++... +..+ .+.++.+| +++|+ +
T Consensus 3 ~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~-g 81 (482)
T PLN03007 3 HEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE-G 81 (482)
T ss_pred CCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC-C
Confidence 346899999999999999999999999999999999999988765543211 0011 34455566 46765 4
Q ss_pred CCCcc--------CHHHHHHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchHHHHH
Q 022744 81 SAQTE--------GVEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCI 152 (292)
Q Consensus 81 ~~~~~--------~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~ 152 (292)
.+... +...++..+.+ ..+.+.+.++++.++. ++||||+|.+++|+.++|+++|||+++||+++++++++
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~l~~~-~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~ 159 (482)
T PLN03007 82 CENVDFITSNNNDDSGDLFLKFLF-STKYFKDQLEKLLETT-RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCA 159 (482)
T ss_pred cccccccccccccchHHHHHHHHH-HHHHHHHHHHHHHhcC-CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHH
Confidence 33221 12233333332 2234555555554443 56999999999999999999999999999999999888
Q ss_pred HHHHhcCC-C-CCCCCCcccccCCCCC---CCCCCCCCcccCCCCchhHHHHHHHHHhhccCCCCEEEEcchHHhhHhHH
Q 022744 153 YYHVNKGL-L-KLPLLDSQLLLPGMPP---LEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEVA 227 (292)
Q Consensus 153 ~~~~~~~~-~-~~~~~~~~~~iPg~p~---~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~~ 227 (292)
++++.... . ....++..+.+||+|+ ++..+++.. + ....+.+++.. ..+...++++|++|||+|||++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~--~--~~~~~~~~~~~-~~~~~~~~~~vl~Nt~~~le~~~~ 234 (482)
T PLN03007 160 SYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA--D--EESPMGKFMKE-VRESEVKSFGVLVNSFYELESAYA 234 (482)
T ss_pred HHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC--C--CchhHHHHHHH-HHhhcccCCEEEEECHHHHHHHHH
Confidence 77654211 1 1111123456899983 556677742 1 22223445444 555688899999999999999999
Q ss_pred HHhcccC--CeeeeccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCccc
Q 022744 228 QWLGKHW--SLKTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 228 ~~l~~~~--~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
+++++.. ++|+||||.+......+ .+.. +.+.+ .++++|++|||+|+++|||||||||..
T Consensus 235 ~~~~~~~~~~~~~VGPl~~~~~~~~~--~~~~-~~~~~-~~~~~~~~wLd~~~~~svvyvsfGS~~ 296 (482)
T PLN03007 235 DFYKSFVAKRAWHIGPLSLYNRGFEE--KAER-GKKAN-IDEQECLKWLDSKKPDSVIYLSFGSVA 296 (482)
T ss_pred HHHHhccCCCEEEEcccccccccccc--cccc-CCccc-cchhHHHHHHhcCCCCceEEEeecCCc
Confidence 9998653 79999998654210000 0000 11111 124679999999999999999999975
No 22
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.85 E-value=9.5e-23 Score=196.26 Aligned_cols=262 Identities=23% Similarity=0.304 Sum_probs=152.4
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCC------CCCeeEEEccCCCCCCCCCCc-c
Q 022744 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSP------STSISLEAISDGYDEGGSAQT-E 85 (292)
Q Consensus 13 ~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~------~~~i~~~~l~~~~~~~~~~~~-~ 85 (292)
+.|++++++|++||++|+++||++|+++||+||++++..+........... ...+.+...+++++. +.... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPE-GWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhcc-chHHHHH
Confidence 689999999999999999999999999999999999988665432100000 001111111123333 11110 0
Q ss_pred CHHHHHHHHHHhCcHHHHHHHHHhhc-CCCCccEEEeCCCCccHHHHHHHhC-CCcEEEeccchHHHHHHHHHhcCCCCC
Q 022744 86 GVEAYLERFWQIGPRSLCELVENMNG-SGVPVDCIVYDSFLPWALDVAKKFG-LVGAAFLTQSCVVDCIYYHVNKGLLKL 163 (292)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~~d~iI~D~~~~~~~~vA~~lg-iP~v~f~~~~a~~~~~~~~~~~~~~~~ 163 (292)
........+...+...+++.+..+.. ....+||+|+|.|+.|...+|.+.+ |+..++++.++...++..+....++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~p~ 163 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSYVPS 163 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccccCc
Confidence 11111334444455566665443322 2233899999999999999998885 999999999988777666544333331
Q ss_pred CCC---CcccccCCCCC-CCCCCCCCcccCCCCchhHHHHHHHH---HhhccCCCCEEEEcc-hHHhhHhHHHHhccc--
Q 022744 164 PLL---DSQLLLPGMPP-LEPQDMPSFVYDLGSYPAVSDMVVKY---QFDNIDKADWVLCNT-FYELEKEVAQWLGKH-- 233 (292)
Q Consensus 164 ~~~---~~~~~iPg~p~-~~~~~lp~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~vlvNt-f~eLE~~~~~~l~~~-- 233 (292)
... .+...+++... +...+++................... .......+++++.|+ |.++|+.....++..
T Consensus 164 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~~~~~ 243 (496)
T KOG1192|consen 164 PFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDFEPRPL 243 (496)
T ss_pred ccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCCCCCCC
Confidence 110 01111222111 11122222111100000000111110 111224466888888 999999877666332
Q ss_pred -CCeeeeccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCC--cEEEEEeCccc
Q 022744 234 -WSLKTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANG--LLFIYHLGVWQ 291 (292)
Q Consensus 234 -~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~--SVvYVsFGS~~ 291 (292)
.++++|||+.... .+. ....|++|||.++.+ |||||||||.+
T Consensus 244 ~~~v~~IG~l~~~~--------~~~--------~~~~~~~wl~~~~~~~~~vvyvSfGS~~ 288 (496)
T KOG1192|consen 244 LPKVIPIGPLHVKD--------SKQ--------KSPLPLEWLDILDESRHSVVYISFGSMV 288 (496)
T ss_pred CCCceEECcEEecC--------ccc--------cccccHHHHHHHhhccCCeEEEECCccc
Confidence 3699999996541 100 112699999999998 99999999986
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.70 E-value=4.3e-16 Score=145.89 Aligned_cols=118 Identities=21% Similarity=0.237 Sum_probs=82.7
Q ss_pred EeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCC-CCCC--ccCHHHHHHHHH
Q 022744 19 LSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEG-GSAQ--TEGVEAYLERFW 95 (292)
Q Consensus 19 ~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-~~~~--~~~~~~~~~~~~ 95 (292)
+.+|+.||++|++.||++|++|||+|||++++.+.+.+++ .+++++.+++..+.. ..+. ..+....+..+.
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA------AGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLL 74 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH------cCCEEEecCCcCccccccccccCcchHHHHHHHH
Confidence 4689999999999999999999999999999998877654 378888887543220 1110 012223333333
Q ss_pred HhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEec
Q 022744 96 QIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLT 144 (292)
Q Consensus 96 ~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~ 144 (292)
..+...+..+++.+ +. .++||||+|.++.|+..+|+++|||+|.+.+
T Consensus 75 ~~~~~~~~~l~~~~-~~-~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~ 121 (392)
T TIGR01426 75 DEAEDVLPQLEEAY-KG-DRPDLIVYDIASWTGRLLARKWDVPVISSFP 121 (392)
T ss_pred HHHHHHHHHHHHHh-cC-CCCCEEEECCccHHHHHHHHHhCCCEEEEeh
Confidence 33333444444333 22 2469999999989999999999999998754
No 24
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.55 E-value=1.2e-14 Score=136.40 Aligned_cols=125 Identities=17% Similarity=0.184 Sum_probs=88.7
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCCC--CCC--------
Q 022744 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGG--SAQ-------- 83 (292)
Q Consensus 14 ~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~--~~~-------- 83 (292)
+||+++++|+.||++|++.||++|++|||+|||++++.....+++ .+++|+.+++..+... ...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA------AGLEFVPVGGDPDELLASPERNAGLLLLG 74 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH------cCCceeeCCCCHHHHHhhhhhcccccccc
Confidence 589999999999999999999999999999999999986655543 4788888764322100 000
Q ss_pred ccCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccc
Q 022744 84 TEGVEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQS 146 (292)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~ 146 (292)
..........+...+...+.++++.+. + .++||||+|.+..|+..+|+++|||++.+++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~ 135 (401)
T cd03784 75 PGLLLGALRLLRREAEAMLDDLVAAAR-D-WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGP 135 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc-c-cCCCEEEeCcHHHHHHHHHHHhCCCeEEeeccc
Confidence 001111222333333444555554432 2 356999999988999999999999999998765
No 25
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.48 E-value=2.3e-12 Score=124.46 Aligned_cols=246 Identities=12% Similarity=0.119 Sum_probs=128.8
Q ss_pred CceEEEE-eCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccC---CCCC----CC-CCC
Q 022744 13 RVHCLVL-SYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD---GYDE----GG-SAQ 83 (292)
Q Consensus 13 ~~hvv~~-p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~---~~~~----~~-~~~ 83 (292)
..+|+++ |.++.||++-+..|+++|++|||+||++++..... ... ....+++.+.++. .... .+ ...
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YAS---HLCGNITEIDASLSVEYFKKLVKSSAVFRK 95 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-ccc---CCCCCEEEEEcCCChHHHHHHHhhhhHHHh
Confidence 4457655 88999999999999999999999999998765211 110 0124666665531 1000 00 000
Q ss_pred cc---CH----HHHHHHHHHhCcHHHHH-HHHHhhc-CCCCccEEEeCCCCccHHHHHHHh-CCCcEEEeccchHHHHHH
Q 022744 84 TE---GV----EAYLERFWQIGPRSLCE-LVENMNG-SGVPVDCIVYDSFLPWALDVAKKF-GLVGAAFLTQSCVVDCIY 153 (292)
Q Consensus 84 ~~---~~----~~~~~~~~~~~~~~l~~-~l~~l~~-~~~~~d~iI~D~~~~~~~~vA~~l-giP~v~f~~~~a~~~~~~ 153 (292)
.. +. ......+...|...+.+ .+.++.+ +..++|+||+|.+..+...+|+++ |+|.|.+++........
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~- 174 (507)
T PHA03392 96 RGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENF- 174 (507)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHH-
Confidence 00 00 00111122223333321 1222222 224699999999988888999999 99987776654321111
Q ss_pred HHHhcCCCCCCCCCcccccCCCCCCCCCCCCCcccCC-C-------------CchhHHHHHHHHHh--------hccCCC
Q 022744 154 YHVNKGLLKLPLLDSQLLLPGMPPLEPQDMPSFVYDL-G-------------SYPAVSDMVVKYQF--------DNIDKA 211 (292)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~iPg~p~~~~~~lp~~~~~~-~-------------~~~~~~~~~~~~~~--------~~~~~~ 211 (292)
. ..|-.|. .+-.+|.+..-...++. +...- + -.+...+...+ .+ +-.+++
T Consensus 175 -~-~~gg~p~----~~syvP~~~~~~~~~Ms-f~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~-~f~~~~~~~~~l~~~~ 246 (507)
T PHA03392 175 -E-TMGAVSR----HPVYYPNLWRSKFGNLN-VWETINEIYTELRLYNEFSLLADEQNKLLKQ-QFGPDTPTIRELRNRV 246 (507)
T ss_pred -H-hhccCCC----CCeeeCCcccCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HcCCCCCCHHHHHhCC
Confidence 1 1120110 01123322111111111 00000 0 00000111111 11 112346
Q ss_pred CEEEEcchHHhhHhHHHHhcccC-CeeeeccCCCCccccccccccccCCcCCCCCCchhhhhhhccCCCCcEEEEEeCcc
Q 022744 212 DWVLCNTFYELEKEVAQWLGKHW-SLKTIGPTIPSMYLDKQIEEDKDYGFSIFKPNNESCIKWLNDRANGLLFIYHLGVW 290 (292)
Q Consensus 212 ~~vlvNtf~eLE~~~~~~l~~~~-~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~WLD~q~~~SVvYVsFGS~ 290 (292)
+-+++||-.++|.+ +... .+..|||+.... ... . +-++++.+|||+++ +.||||||||.
T Consensus 247 ~l~lvns~~~~d~~-----rp~~p~v~~vGgi~~~~--------~~~--~----~l~~~l~~fl~~~~-~g~V~vS~GS~ 306 (507)
T PHA03392 247 QLLFVNVHPVFDNN-----RPVPPSVQYLGGLHLHK--------KPP--Q----PLDDYLEEFLNNST-NGVVYVSFGSS 306 (507)
T ss_pred cEEEEecCccccCC-----CCCCCCeeeecccccCC--------CCC--C----CCCHHHHHHHhcCC-CcEEEEECCCC
Confidence 78999999999876 3333 488999985421 000 0 11467889999874 57999999997
Q ss_pred c
Q 022744 291 Q 291 (292)
Q Consensus 291 ~ 291 (292)
.
T Consensus 307 ~ 307 (507)
T PHA03392 307 I 307 (507)
T ss_pred C
Confidence 4
No 26
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.41 E-value=1.1e-13 Score=133.74 Aligned_cols=58 Identities=31% Similarity=0.394 Sum_probs=29.8
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCC
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYD 77 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~ 77 (292)
+|+++|+ +.||+++|..|+++|++|||+||++++.... .+.. ....+++++.++.+.+
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~---~~~~~~~~~~~~~~~~ 59 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNP---SKPSNIRFETYPDPYP 59 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T---------S-CCEEEE-----
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-cccc---ccccceeeEEEcCCcc
Confidence 5788885 8899999999999999999999999886632 2221 1234677777765443
No 27
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.12 E-value=9.3e-12 Score=99.49 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=76.8
Q ss_pred EEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCCCCCCc----cCHHHHH
Q 022744 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQT----EGVEAYL 91 (292)
Q Consensus 16 vv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~----~~~~~~~ 91 (292)
|+++..++.||++|++.|+++|.+|||+|++.+++...+.+.+ .+++|+.++.. . ..... ..+....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~------~Gl~~~~~~~~--~-~~~~~~~~~~~~~~~~ 71 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA------AGLEFVPIPGD--S-RLPRSLEPLANLRRLA 71 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH------TT-EEEESSSC--G-GGGHHHHHHHHHHCHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc------cCceEEEecCC--c-CcCcccchhhhhhhHH
Confidence 6899999999999999999999999999999999988777654 48999998633 0 11110 0111111
Q ss_pred HH--HHHhCcHHHHHHHHHhh-cCC--CCccEEEeCCCCccHHHHHHHhCCCcEEEeccch
Q 022744 92 ER--FWQIGPRSLCELVENMN-GSG--VPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSC 147 (292)
Q Consensus 92 ~~--~~~~~~~~l~~~l~~l~-~~~--~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a 147 (292)
.. ......+.+++...+.. ... ...|+++.+........+|+++|||.+.....+-
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 72 RLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred HHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 11 01111112222111111 011 1357888888788889999999999999766653
No 28
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.17 E-value=2.2e-06 Score=80.93 Aligned_cols=118 Identities=21% Similarity=0.240 Sum_probs=72.4
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCC-CCCCCCCC--ccCHHH
Q 022744 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDG-YDEGGSAQ--TEGVEA 89 (292)
Q Consensus 13 ~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~~--~~~~~~ 89 (292)
+++|+++..|..||++|.+.||++|.++||+|+|+++....+.+.+. ++.|..++.. .+. .... ......
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a------g~~f~~~~~~~~~~-~~~~~~~~~~~~ 73 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA------GLAFVAYPIRDSEL-ATEDGKFAGVKS 73 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh------CcceeeccccCChh-hhhhhhhhccch
Confidence 46899999999999999999999999999999999999988877643 4677766531 111 0000 000000
Q ss_pred HHHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEE
Q 022744 90 YLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAA 141 (292)
Q Consensus 90 ~~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~ 141 (292)
+.. ..........+.++-+. +.. +|.++.|.- .|...+++.+++|.+.
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~-e~~-~~~~~~~~~-~~~~~~~~~~~~~~~~ 121 (406)
T COG1819 74 FRR-LLQQFKKLIRELLELLR-ELE-PDLVVDDAR-LSLGLAARLLGIPVVG 121 (406)
T ss_pred hHH-HhhhhhhhhHHHHHHHH-hcc-hhhhhcchh-hhhhhhhhhcccchhh
Confidence 110 11111112223333222 223 477777753 4444788888888876
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.12 E-value=2.9e-05 Score=70.40 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=68.9
Q ss_pred eEEEEeCC-CccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHHHHH
Q 022744 15 HCLVLSYP-AQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLER 93 (292)
Q Consensus 15 hvv~~p~p-~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (292)
||++.... |.||+.-.+.||++| |||+|+|++.....+.+.. .+....+++ +.........+.......
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 71 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-------RFPVREIPG-LGPIQENGRLDRWKTVRN 71 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-------ccCEEEccC-ceEeccCCccchHHHHHH
Confidence 55555554 999999999999999 6999999997754333321 234444442 111000011111111111
Q ss_pred H---HHhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchH
Q 022744 94 F---WQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCV 148 (292)
Q Consensus 94 ~---~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 148 (292)
. .......++++++.+.+ .++|+||+|. .+.+...|+..|||++.+......
T Consensus 72 ~~~~~~~~~~~~~~~~~~l~~--~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~ 126 (318)
T PF13528_consen 72 NIRWLARLARRIRREIRWLRE--FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWF 126 (318)
T ss_pred HHHhhHHHHHHHHHHHHHHHh--cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHc
Confidence 1 11112233444433322 2469999994 555778899999999987665533
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.04 E-value=4e-05 Score=69.97 Aligned_cols=119 Identities=12% Similarity=0.091 Sum_probs=65.8
Q ss_pred EEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCee-EEEccCCCCCCCCCCccCHHHHHHHHH
Q 022744 17 LVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSIS-LEAISDGYDEGGSAQTEGVEAYLERFW 95 (292)
Q Consensus 17 v~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~-~~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (292)
+.+.-.|.||+.|.+.++++|.+ ||+|+|+++......++. .++. +...|. +.-.......+....+....
T Consensus 4 ~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~------~~~~~~~~~p~-~~~~~~~~~~~~~~~l~~~~ 75 (321)
T TIGR00661 4 YSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK------YGFKVFETFPG-IKLKGEDGKVNIVKTLRNKE 75 (321)
T ss_pred EEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh------hcCcceeccCC-ceEeecCCcCcHHHHHHhhc
Confidence 34666788999999999999999 999999987663322221 1222 222221 11000001111111111000
Q ss_pred HhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccc
Q 022744 96 QIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQS 146 (292)
Q Consensus 96 ~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~ 146 (292)
......+.+..+.+ ++. +||+||+| +-+.+..+|+.+|||.+.+.-+.
T Consensus 76 ~~~~~~~~~~~~~l-~~~-~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~ 123 (321)
T TIGR00661 76 YSPKKAIRREINII-REY-NPDLIISD-FEYSTVVAAKLLKIPVICISNQN 123 (321)
T ss_pred cccHHHHHHHHHHH-Hhc-CCCEEEEC-CchHHHHHHHhcCCCEEEEecch
Confidence 11012233333322 222 45999999 66677889999999999765543
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.25 E-value=0.0046 Score=57.31 Aligned_cols=121 Identities=9% Similarity=0.012 Sum_probs=71.0
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccc-cccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHHHHH
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKS-LHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLER 93 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~-~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (292)
+|++..-..-||+.|.+.+|++|.++||+|+|+++..-.+. +- +..++.+..++.. ++.....+.. +..
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~-----~~~g~~~~~~~~~----~l~~~~~~~~-~~~ 72 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTII-----EKENIPYYSISSG----KLRRYFDLKN-IKD 72 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccC-----cccCCcEEEEecc----CcCCCchHHH-HHH
Confidence 46677777779999999999999999999999987764321 11 1236777776521 1111111211 111
Q ss_pred HHHhCcHHH--HHHHHHhhcCCCCccEEEeCCCCcc--HHHHHHHhCCCcEEEeccchHHH
Q 022744 94 FWQIGPRSL--CELVENMNGSGVPVDCIVYDSFLPW--ALDVAKKFGLVGAAFLTQSCVVD 150 (292)
Q Consensus 94 ~~~~~~~~l--~~~l~~l~~~~~~~d~iI~D~~~~~--~~~vA~~lgiP~v~f~~~~a~~~ 150 (292)
..+.....+ ..++++ .+||+||....... +...|+-+++|.++.-......+
T Consensus 73 ~~~~~~~~~~~~~i~~~-----~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~ 128 (352)
T PRK12446 73 PFLVMKGVMDAYVRIRK-----LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGL 128 (352)
T ss_pred HHHHHHHHHHHHHHHHh-----cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccH
Confidence 111111111 122332 24599999654432 46777888999988665543333
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=96.88 E-value=0.026 Score=52.45 Aligned_cols=122 Identities=15% Similarity=0.099 Sum_probs=72.0
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCC-EEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHHHHH
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGL-KVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLER 93 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~-~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (292)
.|++.-..+-||+.|.+.|++.|.++|. +|.++.+....+.... ...++.+..++.+-.. ......+....+..
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~----~~~~~~~~~I~~~~~~-~~~~~~~~~~~~~~ 76 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV----KQYGIEFELIPSGGLR-RKGSLKLLKAPFKL 76 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec----cccCceEEEEeccccc-ccCcHHHHHHHHHH
Confidence 4677777788999999999999999999 5777766554432211 1237888887643111 11111122222222
Q ss_pred HHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCcc--HHHHHHHhCCCcEEEeccchH
Q 022744 94 FWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPW--ALDVAKKFGLVGAAFLTQSCV 148 (292)
Q Consensus 94 ~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~--~~~vA~~lgiP~v~f~~~~a~ 148 (292)
+.. ....+.++++. +||+||.-..+.. +.-.|..+|||.++--+-...
T Consensus 77 ~~~--~~~a~~il~~~-----kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~ 126 (357)
T COG0707 77 LKG--VLQARKILKKL-----KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVP 126 (357)
T ss_pred HHH--HHHHHHHHHHc-----CCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCc
Confidence 221 12334555543 4599999655543 456667889999986555443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.59 E-value=0.035 Score=50.62 Aligned_cols=115 Identities=19% Similarity=0.165 Sum_probs=64.7
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccC-CCCCCCCCCccCHHHHHHH
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD-GYDEGGSAQTEGVEAYLER 93 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~~~~~~ 93 (292)
+|++..--.-||....+.|++.|.++||+|++++....... . . ....++++..++- ++.. ......+...+..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 74 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-R-L--VPKAGIPLHTIPVGGLRR--KGSLKKLKAPFKL 74 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-h-c--ccccCCceEEEEecCcCC--CChHHHHHHHHHH
Confidence 36666667779999999999999999999999987542211 1 0 0113577776652 1111 0000111111111
Q ss_pred HHHhCcHHHHHHHHHhhcCCCCccEEEeCCCC-c-cHHHHHHHhCCCcEEE
Q 022744 94 FWQIGPRSLCELVENMNGSGVPVDCIVYDSFL-P-WALDVAKKFGLVGAAF 142 (292)
Q Consensus 94 ~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~-~-~~~~vA~~lgiP~v~f 142 (292)
+ .. ...+...+++ .++|+|++..-. . ++..+|+..|+|.+..
T Consensus 75 ~-~~-~~~~~~~i~~-----~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 75 L-KG-VLQARKILKK-----FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred H-HH-HHHHHHHHHh-----cCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 1 11 1123333332 246999986532 3 3456678889999864
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=96.27 E-value=0.086 Score=48.02 Aligned_cols=113 Identities=19% Similarity=0.122 Sum_probs=64.2
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCccccc-ccccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHHHHH
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISK-SLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLER 93 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~-~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (292)
+|+++.--..||+...++|++.|.++||+|++++.+.... .+. ...+++++.++-.-.. .......+..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~-----~~~g~~~~~i~~~~~~-----~~~~~~~l~~ 71 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLV-----PKAGIEFYFIPVGGLR-----RKGSFRLIKT 71 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhccc-----ccCCCceEEEeccCcC-----CCChHHHHHH
Confidence 6888888888999977899999999999999997643211 110 1135677666421100 1111111111
Q ss_pred HHHh--CcHHHHHHHHHhhcCCCCccEEEeCCCCc-c-HHHHHHHhCCCcEEE
Q 022744 94 FWQI--GPRSLCELVENMNGSGVPVDCIVYDSFLP-W-ALDVAKKFGLVGAAF 142 (292)
Q Consensus 94 ~~~~--~~~~l~~~l~~l~~~~~~~d~iI~D~~~~-~-~~~vA~~lgiP~v~f 142 (292)
.... ....+...+++ .++|+|++..... + +..+++..++|.+.+
T Consensus 72 ~~~~~~~~~~l~~~i~~-----~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 72 PLKLLKAVFQARRILKK-----FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred HHHHHHHHHHHHHHHHh-----cCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 1110 01122333332 2469999975432 2 344577789999753
No 35
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.24 E-value=0.11 Score=48.52 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHH
Q 022744 29 PLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSLCELVEN 108 (292)
Q Consensus 29 P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 108 (292)
++.+||+.|+++||+|+++|....... . .+++.+.++..-.. ......-...+.....+ .. .+...+..
T Consensus 12 ~~~~la~~L~~~G~~v~~~~~~~~~~~-------~-~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 80 (396)
T cd03818 12 QFRHLAPALAAQGHEVVFLTEPNAAPP-------P-GGVRVVRYRPPRGP-TSGTHPYLREFEEAVLR-GQ-AVARALLA 80 (396)
T ss_pred hHHHHHHHHHHCCCEEEEEecCCCCCC-------C-CCeeEEEecCCCCC-CCCCCccchhHHHHHHH-HH-HHHHHHHH
Confidence 378899999999999999987764321 1 15777776532111 00000011111111111 11 12222223
Q ss_pred hhcCCCCccEEEeCCCCccHHHHHHHh-CCCcEEEe
Q 022744 109 MNGSGVPVDCIVYDSFLPWALDVAKKF-GLVGAAFL 143 (292)
Q Consensus 109 l~~~~~~~d~iI~D~~~~~~~~vA~~l-giP~v~f~ 143 (292)
+..++-+||+|++-...+++..+.+.+ ++|.+.+.
T Consensus 81 ~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 81 LRAKGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred HHhcCCCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 322334569999987666666777775 48887743
No 36
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=95.87 E-value=0.16 Score=46.67 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=65.0
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccC-CCCCCCCCCccCHHHHHH
Q 022744 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD-GYDEGGSAQTEGVEAYLE 92 (292)
Q Consensus 14 ~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~~~~~ 92 (292)
++|+++.-..-||..-++.|++.|.++||+|++++......... ....+++++.++. ++.. ......+.....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~----~~~~g~~~~~~~~~~~~~--~~~~~~l~~~~~ 75 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARL----VPKAGIEFHFIPSGGLRR--KGSLANLKAPFK 75 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhc----cccCCCcEEEEeccCcCC--CChHHHHHHHHH
Confidence 56888877667999999999999999999999998755211100 0113667766642 1111 000000111111
Q ss_pred HHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCC-ccH-HHHHHHhCCCcEEE
Q 022744 93 RFWQIGPRSLCELVENMNGSGVPVDCIVYDSFL-PWA-LDVAKKFGLVGAAF 142 (292)
Q Consensus 93 ~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~-~~~-~~vA~~lgiP~v~f 142 (292)
.+ ... ..+..++++ .++|+|++.... .|. ..+++..++|.+..
T Consensus 76 ~~-~~~-~~~~~~ik~-----~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 76 LL-KGV-LQARKILKR-----FKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HH-HHH-HHHHHHHHh-----cCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 11 110 112233332 256999998643 343 44566678999865
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=94.75 E-value=0.21 Score=46.80 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=33.1
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 14 ~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
++|++..--.-||+.|. .|++.|.++|.+|+|+....
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg 42 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAG 42 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEcc
Confidence 67888888888999999 99999999999999988653
No 38
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=94.30 E-value=0.34 Score=44.56 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=57.7
Q ss_pred ccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHH
Q 022744 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSLC 103 (292)
Q Consensus 24 ~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (292)
-|+-..+.+|++.|+++||+|+++++.......... ....++.+..++.. +. ..............+.. .+.
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~----~~~ 92 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV--ELAPGVRVVRVPAG-PA-EYLPKEELWPYLDEFAD----DLL 92 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCcc--ccccceEEEecccc-cc-cCCChhhcchhHHHHHH----HHH
Confidence 478889999999999999999999865432211100 12346777665421 11 00000011111111111 112
Q ss_pred HHHHHhhcCCCCccEEEeCCCC-c-cHHHHHHHhCCCcEEE
Q 022744 104 ELVENMNGSGVPVDCIVYDSFL-P-WALDVAKKFGLVGAAF 142 (292)
Q Consensus 104 ~~l~~l~~~~~~~d~iI~D~~~-~-~~~~vA~~lgiP~v~f 142 (292)
..++ ....++|+|++.... . .+..+++++|+|.+..
T Consensus 93 ~~~~---~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~ 130 (398)
T cd03800 93 RFLR---REGGRPDLIHAHYWDSGLVALLLARRLGIPLVHT 130 (398)
T ss_pred HHHH---hcCCCccEEEEecCccchHHHHHHhhcCCceEEE
Confidence 2222 211257999887543 3 3567788899998763
No 39
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=94.04 E-value=1.1 Score=42.27 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=40.4
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEcc
Q 022744 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (292)
Q Consensus 13 ~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~ 73 (292)
+.+|+++.....|+-.=+..+|+.|+++||+||+++....... ... ....+++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~-~~~--~~~~~v~~~~~~ 60 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPH-DEI--LSNPNITIHPLP 60 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCC-HHH--hcCCCEEEEECC
Confidence 4567777777778878889999999999999999986532111 000 023578888774
No 40
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=93.95 E-value=0.32 Score=44.62 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=46.4
Q ss_pred CCCceEEEEe--CCCccChHHHHHHHHHHhhC--CCEEEEEeCcccccccccCCCCCCCCeeEEEccC
Q 022744 11 CKRVHCLVLS--YPAQGHINPLLQFAKRLEHK--GLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD 74 (292)
Q Consensus 11 ~~~~hvv~~p--~p~~GH~~P~l~La~~La~r--G~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~ 74 (292)
++.++|+|.. ..|.||+-=.+.+|+.|++. |++|++||.-.....+. ...+++++.+|.
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~-----~~~gVd~V~LPs 69 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP-----GPAGVDFVKLPS 69 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC-----CcccCceEecCc
Confidence 4456788877 46789999999999999996 99999999766544332 236899999984
No 41
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=93.71 E-value=0.37 Score=43.11 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=35.2
Q ss_pred CCccChHHHHHHHHHHhhCCCEEEEEeCccccc---ccccCCCCCCCCeeEEEcc
Q 022744 22 PAQGHINPLLQFAKRLEHKGLKVTLVTTYFISK---SLHRDSSSPSTSISLEAIS 73 (292)
Q Consensus 22 p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~---~~~~~~~~~~~~i~~~~l~ 73 (292)
-|.||+.=.+.||++|.++|++|+|++...... .+.. .++.+..++
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~------~g~~v~~~~ 60 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLS------AGFPVYELP 60 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH------cCCeEEEec
Confidence 478999999999999999999999998765332 2221 366777665
No 42
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=93.42 E-value=1.2 Score=39.80 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=26.3
Q ss_pred ccChHHHHHHHHHHhhCCCEEEEEeCcccc
Q 022744 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (292)
Q Consensus 24 ~GH~~P~l~La~~La~rG~~VT~itt~~~~ 53 (292)
-|+-.-...|++.|+++||+|+++++....
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 44 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDP 44 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCC
Confidence 488888999999999999999999876643
No 43
>PRK10307 putative glycosyl transferase; Provisional
Probab=92.22 E-value=1.9 Score=40.42 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=20.0
Q ss_pred HHHHHHHHhhCCCEEEEEeCcc
Q 022744 30 LLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 30 ~l~La~~La~rG~~VT~itt~~ 51 (292)
+.+|++.|+++||+||++|+.+
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 5799999999999999999764
No 44
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=91.72 E-value=2.2 Score=38.18 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=26.2
Q ss_pred ccChHHHHHHHHHHhhCCCEEEEEeCccc
Q 022744 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 24 ~GH~~P~l~La~~La~rG~~VT~itt~~~ 52 (292)
.|+-.-+..|++.|+++||+|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPN 42 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCC
Confidence 59999999999999999999999987653
No 45
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=91.51 E-value=5.2 Score=41.06 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=72.0
Q ss_pred hhhhhcccCC-CceEEEEeCCC-------------ccChHHHHHHHHH--------HhhCCC----EEEEEeCcccccc-
Q 022744 3 NIEKKAASCK-RVHCLVLSYPA-------------QGHINPLLQFAKR--------LEHKGL----KVTLVTTYFISKS- 55 (292)
Q Consensus 3 ~~~~~~~~~~-~~hvv~~p~p~-------------~GH~~P~l~La~~--------La~rG~----~VT~itt~~~~~~- 55 (292)
|+|+-..+-+ ..+|++++.=+ -|+..=.++||++ |+++|| +|+++|-......
T Consensus 244 ~~e~f~~~~p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~ 323 (784)
T TIGR02470 244 VLEAFLGRIPMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEG 323 (784)
T ss_pred HHHHHHhhCCccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccc
Confidence 5666554433 46888876655 4667777888886 578999 7778885432111
Q ss_pred ------cccCCCCCCCCeeEEEccCCCCCCC--CC---CccCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCC
Q 022744 56 ------LHRDSSSPSTSISLEAISDGYDEGG--SA---QTEGVEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSF 124 (292)
Q Consensus 56 ------~~~~~~~~~~~i~~~~l~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~ 124 (292)
++.. ...++++++.+|-|-+. + .. +..++..++..|... ..+.+.++. ..+||+|++-..
T Consensus 324 ~~~~~~~e~~--~~~~~~~I~rvp~g~~~-~~~~~~~i~k~~l~p~l~~f~~~---~~~~~~~~~---~~~pDlIHahy~ 394 (784)
T TIGR02470 324 TTCNQRLEKV--YGTEHAWILRVPFRTEN-GIILRNWISRFEIWPYLETFAED---AEKEILAEL---QGKPDLIIGNYS 394 (784)
T ss_pred cccccccccc--cCCCceEEEEecCCCCc-ccccccccCHHHHHHHHHHHHHH---HHHHHHHhc---CCCCCEEEECCC
Confidence 1110 12357888888744222 1 01 111222333333322 222222221 235699999765
Q ss_pred Cc-c-HHHHHHHhCCCcEE
Q 022744 125 LP-W-ALDVAKKFGLVGAA 141 (292)
Q Consensus 125 ~~-~-~~~vA~~lgiP~v~ 141 (292)
.+ + +..+|+++|||.+.
T Consensus 395 d~glva~lla~~lgVP~v~ 413 (784)
T TIGR02470 395 DGNLVASLLARKLGVTQCT 413 (784)
T ss_pred chHHHHHHHHHhcCCCEEE
Confidence 54 4 46888999999664
No 46
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=91.25 E-value=2.5 Score=44.56 Aligned_cols=129 Identities=15% Similarity=0.096 Sum_probs=71.1
Q ss_pred CceEEEEeCCC---------------ccChHHHHHHHHHHhhCC--CEEEEEeCcccccccc-----cC--CC-------
Q 022744 13 RVHCLVLSYPA---------------QGHINPLLQFAKRLEHKG--LKVTLVTTYFISKSLH-----RD--SS------- 61 (292)
Q Consensus 13 ~~hvv~~p~p~---------------~GH~~P~l~La~~La~rG--~~VT~itt~~~~~~~~-----~~--~~------- 61 (292)
+++|+++..=+ -|+..=.++||++|+++| |+|+++|-....+.+. .. ..
T Consensus 169 ~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~ 248 (1050)
T TIGR02468 169 KLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSEND 248 (1050)
T ss_pred ceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccc
Confidence 57788776432 246667799999999998 8999998654322110 00 00
Q ss_pred ----CCCCCeeEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHH----HHHHhhc-CCCCccEEEeCCCC-cc-HHH
Q 022744 62 ----SPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSLCE----LVENMNG-SGVPVDCIVYDSFL-PW-ALD 130 (292)
Q Consensus 62 ----~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~l~~l~~-~~~~~d~iI~D~~~-~~-~~~ 130 (292)
...++++++.+|.|-.. .+-....+..++..|...+...+.. +.+++.. .+..||+|-+-... ++ +..
T Consensus 249 ~~~~~~~~g~rIvRip~GP~~-~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~ 327 (1050)
T TIGR02468 249 GDEMGESSGAYIIRIPFGPRD-KYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAAL 327 (1050)
T ss_pred cccccCCCCeEEEEeccCCCC-CCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHH
Confidence 01258888888865332 1111222333444444332222221 2222211 11236888886544 33 567
Q ss_pred HHHHhCCCcEEE
Q 022744 131 VAKKFGLVGAAF 142 (292)
Q Consensus 131 vA~~lgiP~v~f 142 (292)
+++.+|||.+..
T Consensus 328 L~~~lgVP~V~T 339 (1050)
T TIGR02468 328 LSGALNVPMVLT 339 (1050)
T ss_pred HHHhhCCCEEEE
Confidence 888999997763
No 47
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=90.95 E-value=1.7 Score=40.11 Aligned_cols=35 Identities=9% Similarity=0.163 Sum_probs=29.5
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeC
Q 022744 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTT 49 (292)
Q Consensus 14 ~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt 49 (292)
++|+++.--.-||+.|-+ +++.|.++++++.++..
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~ 36 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGV 36 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEE
Confidence 468888888889999999 99999998877777654
No 48
>PLN00142 sucrose synthase
Probab=89.96 E-value=2.9 Score=43.02 Aligned_cols=104 Identities=19% Similarity=0.225 Sum_probs=54.8
Q ss_pred HHHHHHhhCCCEEE----EEeCcccccc-------cccCCCCCCCCeeEEEccCCCCCCCC-C---CccCHHHHHHHHHH
Q 022744 32 QFAKRLEHKGLKVT----LVTTYFISKS-------LHRDSSSPSTSISLEAISDGYDEGGS-A---QTEGVEAYLERFWQ 96 (292)
Q Consensus 32 ~La~~La~rG~~VT----~itt~~~~~~-------~~~~~~~~~~~i~~~~l~~~~~~~~~-~---~~~~~~~~~~~~~~ 96 (292)
+|+++|+++||.|+ ++|=-..... ++.. ...++.+++.+|-|-.. +. . +..++..++..|..
T Consensus 319 el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v--~~~~~~~I~rvP~g~~~-~~l~~~i~ke~l~p~L~~f~~ 395 (815)
T PLN00142 319 EMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKV--SGTEHSHILRVPFRTEK-GILRKWISRFDVWPYLETFAE 395 (815)
T ss_pred HHHHHHHhcCCCccceeEEEEeccCCccCCcccCcceec--cCCCceEEEecCCCCCc-cccccccCHHHHHHHHHHHHH
Confidence 35578889999775 6663221111 1100 12347888888754321 11 1 11122233333332
Q ss_pred hCcHHHHHHHHHhhcCCCCccEEEeCCCCc-c-HHHHHHHhCCCcEEEec
Q 022744 97 IGPRSLCELVENMNGSGVPVDCIVYDSFLP-W-ALDVAKKFGLVGAAFLT 144 (292)
Q Consensus 97 ~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~-~-~~~vA~~lgiP~v~f~~ 144 (292)
. ..+.+.++. ...||+|++-...+ + +..+|+++|||.+...-
T Consensus 396 ~---~~~~~~~~~---~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 396 D---AASEILAEL---QGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred H---HHHHHHHhc---CCCCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 2 222322222 23469999986664 4 57889999999997443
No 49
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=89.08 E-value=5.7 Score=36.87 Aligned_cols=112 Identities=17% Similarity=0.112 Sum_probs=57.7
Q ss_pred CccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHH
Q 022744 23 AQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSL 102 (292)
Q Consensus 23 ~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (292)
.-|.-.-..+||++|+++||+||++++......-... ....++++..++.+--. +. ........+..+. ...+
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~-~~~~~~~~~~~~~---~~~~ 91 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVV--EVAPGVRVRNVVAGPYE-GL-DKEDLPTQLCAFT---GGVL 91 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCcc--ccCCCcEEEEecCCCcc-cC-CHHHHHHHHHHHH---HHHH
Confidence 3477788999999999999999999976432110000 11247777776421000 10 0011111111111 1122
Q ss_pred HHHHHHhhcCCCCccEEEeCCCC-cc-HHHHHHHhCCCcEEEec
Q 022744 103 CELVENMNGSGVPVDCIVYDSFL-PW-ALDVAKKFGLVGAAFLT 144 (292)
Q Consensus 103 ~~~l~~l~~~~~~~d~iI~D~~~-~~-~~~vA~~lgiP~v~f~~ 144 (292)
+..++.. ..++|+|-+-... .+ +..+++.+++|.+..+-
T Consensus 92 ~~~~~~~---~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h 132 (405)
T TIGR03449 92 RAEARHE---PGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAH 132 (405)
T ss_pred HHHhhcc---CCCCCeEEechHHHHHHHHHHHHhcCCCEEEecc
Confidence 2333221 1356888664432 23 34556778999876443
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=89.02 E-value=8.3 Score=33.93 Aligned_cols=53 Identities=17% Similarity=0.079 Sum_probs=38.9
Q ss_pred EEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEcc
Q 022744 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (292)
Q Consensus 16 vv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~ 73 (292)
|+++.....|+..-+.+|++.|.++||+|+++++....... ....+++...++
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~-----~~~~~~~~~~~~ 54 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEE-----LEALGVKVIPIP 54 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccc-----cccCCceEEecc
Confidence 55666667899999999999999999999999887644321 122467776665
No 51
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=88.99 E-value=6.6 Score=32.51 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=52.6
Q ss_pred hCCCEEEEEeCcccccccccCCCCCCCCeeEEEccC--CCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCc
Q 022744 39 HKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD--GYDEGGSAQTEGVEAYLERFWQIGPRSLCELVENMNGSGVPV 116 (292)
Q Consensus 39 ~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 116 (292)
++||+|+++|....... .++++.+.+.. +-......-..+... .+.+ . +.+...+.+|.+++-.|
T Consensus 1 q~gh~v~fl~~~~~~~~--------~~GV~~~~y~~~~~~~~~~~~~~~~~e~---~~~r-g-~av~~a~~~L~~~Gf~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPI--------PPGVRVVRYRPPRGPTPGTHPYVRDFEA---AVLR-G-QAVARAARQLRAQGFVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCC--------CCCcEEEEeCCCCCCCCCCCcccccHHH---HHHH-H-HHHHHHHHHHHHcCCCC
Confidence 47999999995543321 14788877642 111100011122221 1111 1 23334444555556567
Q ss_pred cEEEeCCCCccHHHHHHHh-CCCcEEEe
Q 022744 117 DCIVYDSFLPWALDVAKKF-GLVGAAFL 143 (292)
Q Consensus 117 d~iI~D~~~~~~~~vA~~l-giP~v~f~ 143 (292)
|+||.-.-.+.+.-+-+.+ ++|.+.++
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 9999988777778888888 88888864
No 52
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=88.17 E-value=8.4 Score=35.39 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 27 INPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 27 ~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
-.-+..||++|+++||+||++|+..
T Consensus 16 e~~~~~la~~L~~~G~~V~v~~~~~ 40 (392)
T cd03805 16 ERLVVDAALALQSRGHEVTIYTSHH 40 (392)
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 3456899999999999999998753
No 53
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=85.61 E-value=1 Score=35.24 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHH
Q 022744 29 PLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSLCELVEN 108 (292)
Q Consensus 29 P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 108 (292)
=+.+|++.|+++||+||+++.......-. ....++++..++ ++. . .......... ..+...+..
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~--~~~-~-~~~~~~~~~~--------~~~~~~l~~ 69 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDE----EEEDGVRVHRLP--LPR-R-PWPLRLLRFL--------RRLRRLLAA 69 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-S----EEETTEEEEEE----S--S-SSGGGHCCHH--------HHHHHHCHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccc----cccCCceEEecc--CCc-c-chhhhhHHHH--------HHHHHHHhh
Confidence 36789999999999999999655433211 012468887775 221 0 0000000011 122222311
Q ss_pred hhcCCCCccEEEeCCCC-ccHHHHHH-HhCCCcEEEe
Q 022744 109 MNGSGVPVDCIVYDSFL-PWALDVAK-KFGLVGAAFL 143 (292)
Q Consensus 109 l~~~~~~~d~iI~D~~~-~~~~~vA~-~lgiP~v~f~ 143 (292)
.. .++|+|.+-... .+...+++ +.++|.+.-.
T Consensus 70 --~~-~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 70 --RR-ERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp --CT----SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred --hc-cCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 22 457988876543 24455666 7899998743
No 54
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=84.16 E-value=17 Score=33.55 Aligned_cols=104 Identities=19% Similarity=0.195 Sum_probs=61.0
Q ss_pred ccChHHHHHHHHHHhhCCCEEEEEeCcccc-cccccCCCCCCCCeeEEEccCCCCCCCCCCccCHH-HHHHHHHHhCcHH
Q 022744 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFIS-KSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVE-AYLERFWQIGPRS 101 (292)
Q Consensus 24 ~GH~~P~l~La~~La~rG~~VT~itt~~~~-~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 101 (292)
.-|+.-+-.+.++|.++||+|.+.+-+... ..+- ..-++.+..+... + .+.. .......+. . .
T Consensus 10 p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL-----~~yg~~y~~iG~~----g----~~~~~Kl~~~~~R~-~-~ 74 (335)
T PF04007_consen 10 PAHVHFFKNIIRELEKRGHEVLITARDKDETEELL-----DLYGIDYIVIGKH----G----DSLYGKLLESIERQ-Y-K 74 (335)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHH-----HHcCCCeEEEcCC----C----CCHHHHHHHHHHHH-H-H
Confidence 348999999999999999999885544321 1111 1246777776421 1 1111 111111111 1 1
Q ss_pred HHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchH
Q 022744 102 LCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCV 148 (292)
Q Consensus 102 l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 148 (292)
+-.++++ ..||++|+ ....-+..+|.-+|+|.|.|.=..-+
T Consensus 75 l~~~~~~-----~~pDv~is-~~s~~a~~va~~lgiP~I~f~D~e~a 115 (335)
T PF04007_consen 75 LLKLIKK-----FKPDVAIS-FGSPEAARVAFGLGIPSIVFNDTEHA 115 (335)
T ss_pred HHHHHHh-----hCCCEEEe-cCcHHHHHHHHHhCCCeEEEecCchh
Confidence 2222322 24599996 22346778999999999999876543
No 55
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=82.88 E-value=13 Score=35.37 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHhhCCC--EEEEEeCcccccc----cccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHHHHHHHHhCc
Q 022744 26 HINPLLQFAKRLEHKGL--KVTLVTTYFISKS----LHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGP 99 (292)
Q Consensus 26 H~~P~l~La~~La~rG~--~VT~itt~~~~~~----~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (292)
=-.=+.+||++|+++|| +|+++|....... ..........+++++.++-+ +. ..........++..+.
T Consensus 28 ~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~-~~-~~~~~~~~~~~~~~~~---- 101 (439)
T TIGR02472 28 QTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFG-PR-RYLRKELLWPYLDELA---- 101 (439)
T ss_pred cchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCC-CC-CCcChhhhhhhHHHHH----
Confidence 33457899999999997 9999995421110 00000001356777776521 11 0101111111111111
Q ss_pred HHHHHHHHHhhcCCCCccEEEeCCCC-cc-HHHHHHHhCCCcEEEe
Q 022744 100 RSLCELVENMNGSGVPVDCIVYDSFL-PW-ALDVAKKFGLVGAAFL 143 (292)
Q Consensus 100 ~~l~~~l~~l~~~~~~~d~iI~D~~~-~~-~~~vA~~lgiP~v~f~ 143 (292)
..+...+++ ...++|+|-+-... .+ +..+++.+|+|.+...
T Consensus 102 ~~l~~~~~~---~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~ 144 (439)
T TIGR02472 102 DNLLQHLRQ---QGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTG 144 (439)
T ss_pred HHHHHHHHH---cCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEec
Confidence 122233332 12246999885433 23 3456677899987643
No 56
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=82.81 E-value=2.1 Score=38.34 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=26.6
Q ss_pred ccChHHHHHHHHHHhhCCCEEEEEeCccc
Q 022744 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 24 ~GH~~P~l~La~~La~rG~~VT~itt~~~ 52 (292)
-|+.+.+..|++.|+++||+|+++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 69999999999999999999999998753
No 57
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=82.19 E-value=1.7 Score=39.57 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=29.8
Q ss_pred eEEEEeCC-CccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 15 HCLVLSYP-AQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 15 hvv~~p~p-~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
+|+++.+| .-|.-.-..+|++.|+++||+|+++++..
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 45566664 34788889999999999999999998754
No 58
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=81.21 E-value=2.9 Score=40.08 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=32.1
Q ss_pred CCCceEEEEeCCC-----ccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 11 CKRVHCLVLSYPA-----QGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 11 ~~~~hvv~~p~p~-----~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
++++||+++.-+. -|=-+=+.+|++.|.++||+|+++++..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 6788999984332 2434577899999999999999999765
No 59
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=81.05 E-value=3.5 Score=31.95 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=34.6
Q ss_pred EEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEcc
Q 022744 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (292)
Q Consensus 16 vv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~ 73 (292)
|+++.-....| ..++++.|.++|++|++++......... ...++++..++
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~-----~~~~i~~~~~~ 51 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYE-----IIEGIKVIRLP 51 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhh-----HhCCeEEEEec
Confidence 55666555556 5688999999999999999955332211 13578888764
No 60
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=80.16 E-value=2 Score=34.14 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=22.9
Q ss_pred cChHHHHHHHHHHhhCCCEEEEEeCcccc
Q 022744 25 GHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (292)
Q Consensus 25 GH~~P~l~La~~La~rG~~VT~itt~~~~ 53 (292)
|=-.-+.+|++.|+++||+||++++....
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 56677899999999999999999776543
No 61
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=79.44 E-value=4.6 Score=32.07 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=38.4
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCccccc
Q 022744 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISK 54 (292)
Q Consensus 11 ~~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~ 54 (292)
++++++++...++-+|-.-..-++..|.++|++|+++...-..+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e 44 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQE 44 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 36789999999999999999999999999999999987654333
No 62
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=77.74 E-value=2.5 Score=37.86 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=32.4
Q ss_pred eEEEEe----CCCccChHHHHHHHHHHhhCCCEEEEEeCcccc
Q 022744 15 HCLVLS----YPAQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (292)
Q Consensus 15 hvv~~p----~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~ 53 (292)
||++++ --|.||+.=++.||+.|.++|+.++|++.....
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e 44 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIE 44 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchh
Confidence 555554 347899999999999999999999999987743
No 63
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=76.20 E-value=4 Score=37.72 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=30.8
Q ss_pred CCceEEEEeCC-CccChHHHHHHHHHHhhCCCEEEEEeCc
Q 022744 12 KRVHCLVLSYP-AQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (292)
Q Consensus 12 ~~~hvv~~p~p-~~GH~~P~l~La~~La~rG~~VT~itt~ 50 (292)
++++|++++.. +.||..+...|++.|.++|++|.++...
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 34567777766 5599999999999999999986666443
No 64
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=75.57 E-value=4.4 Score=36.10 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=28.3
Q ss_pred eCCCccChHHHHHHHHHHhhCCCEEEEEeCccc
Q 022744 20 SYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 20 p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~ 52 (292)
|....|+..-...|++.|+++||+|+++++...
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 334679999999999999999999999987653
No 65
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=75.53 E-value=5 Score=30.64 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=32.5
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~ 50 (292)
++++.+.++-.|...+.-++..|.++|++|+++-..
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 488999999999999999999999999999887644
No 66
>PLN02275 transferase, transferring glycosyl groups
Probab=74.82 E-value=70 Score=29.47 Aligned_cols=56 Identities=18% Similarity=0.080 Sum_probs=37.3
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHhhCCC-EEEEEeCcccccccccCCCCCCCCeeEEEcc
Q 022744 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKGL-KVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (292)
Q Consensus 13 ~~hvv~~p~p~~GH~~P~l~La~~La~rG~-~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~ 73 (292)
+.||++. +-.|.---+..++++|+++|+ +||+++.......... ....+++++.++
T Consensus 6 ~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~---~~~~~v~v~r~~ 62 (371)
T PLN02275 6 RAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPAL---LNHPSIHIHLMV 62 (371)
T ss_pred EEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHH---hcCCcEEEEECC
Confidence 4455554 777888889999999999885 7999975442111110 123468888875
No 67
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=67.74 E-value=24 Score=33.46 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=34.7
Q ss_pred eEEEEeCCCccChHHHHHHHHHHh-hCCCEEEEEeCccccccc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLE-HKGLKVTLVTTYFISKSL 56 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La-~rG~~VT~itt~~~~~~~ 56 (292)
=+++..-|+.|=..-.+++|..++ .+|..|-|++.+-...++
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 467778889999999999999998 689999999987654433
No 68
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=67.73 E-value=8.2 Score=34.30 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=26.8
Q ss_pred CccChHHHHHHHHHHhhCCCEEEEEeCccc
Q 022744 23 AQGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 23 ~~GH~~P~l~La~~La~rG~~VT~itt~~~ 52 (292)
.-|+..-...|++.|+++||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 459999999999999999999999987654
No 69
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=67.30 E-value=13 Score=33.43 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=31.8
Q ss_pred ccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEcc
Q 022744 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (292)
Q Consensus 24 ~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~ 73 (292)
-|=-.-..+|++.|+++||+|++++......... ....+++++.++
T Consensus 15 gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~----~~~~~i~~~~~~ 60 (363)
T cd04955 15 GGFETFVEELAPRLVARGHEVTVYCRSPYPKQKE----TEYNGVRLIHIP 60 (363)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcc----cccCCceEEEcC
Confidence 3445667899999999999999998765322111 123578887765
No 70
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=66.91 E-value=6.2 Score=35.41 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=25.7
Q ss_pred CccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 23 AQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 23 ~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
.-|+......|++.|.++||+|++++...
T Consensus 11 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 11 LGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred CCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 36889999999999999999999998644
No 71
>PRK00654 glgA glycogen synthase; Provisional
Probab=66.91 E-value=8.9 Score=36.78 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=22.8
Q ss_pred cChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 25 GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 25 GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
|.-.-.-.|+++|+++||+|+++++..
T Consensus 18 Gl~~~v~~L~~~L~~~G~~V~v~~p~y 44 (466)
T PRK00654 18 GLGDVVGALPKALAALGHDVRVLLPGY 44 (466)
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 555666899999999999999999753
No 72
>PRK08506 replicative DNA helicase; Provisional
Probab=66.73 E-value=23 Score=34.32 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=35.3
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCccccccc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~ 56 (292)
=+++-.-|+.|=..-.+.+|...+.+|..|-|++.+-...++
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 467778899999999999999999999999999987654433
No 73
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=66.18 E-value=9.5 Score=34.25 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=30.8
Q ss_pred eEEEEeCC-C-ccChHHHHHHHHHHhhCCCEEEEEeCccc
Q 022744 15 HCLVLSYP-A-QGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 15 hvv~~p~p-~-~GH~~P~l~La~~La~rG~~VT~itt~~~ 52 (292)
+|+++... + -|+-.-...+++.|.++||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 56666544 3 58899999999999999999999987653
No 74
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=65.60 E-value=15 Score=27.69 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=33.5
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
++++...+..-|-.-+.-++..|.++||+|.++-...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 7899999999999999999999999999999885443
No 75
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=64.38 E-value=12 Score=33.17 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.3
Q ss_pred cChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 25 GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 25 GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
|--.-..+|++.|.++||+|++++...
T Consensus 20 G~~~~~~~l~~~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 20 GTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred cHHHHHHHHHHHHHhcCceEEEEecCC
Confidence 455678999999999999999999755
No 76
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=63.75 E-value=34 Score=32.09 Aligned_cols=99 Identities=8% Similarity=0.027 Sum_probs=56.3
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCE--E--EEEeCcccccccccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHH
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLK--V--TLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAY 90 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~--V--T~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 90 (292)
.++-+--.+.|.++-...|+++|.+++.+ | |+.|+.. .+..... ...++..+.+|- +..
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~-~~~~~~~---~~~~~~~~~~P~-----d~~-------- 113 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTG-SERAQAL---FGDDVEHRYLPY-----DLP-------- 113 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccH-HHHHHHh---cCCCceEEEecC-----CcH--------
Confidence 45777888889999999999999998744 3 3332222 2222111 112455555441 110
Q ss_pred HHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCcc--HHHHHHHhCCCcEEEec
Q 022744 91 LERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPW--ALDVAKKFGLVGAAFLT 144 (292)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~--~~~vA~~lgiP~v~f~~ 144 (292)
..++.+++++ + ||+++.--.-.| ....+++.|+|.+....
T Consensus 114 ---------~~~~~~l~~~----~-Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~~ 155 (425)
T PRK05749 114 ---------GAVRRFLRFW----R-PKLVIIMETELWPNLIAELKRRGIPLVLANA 155 (425)
T ss_pred ---------HHHHHHHHhh----C-CCEEEEEecchhHHHHHHHHHCCCCEEEEec
Confidence 1234445544 3 488775322334 34556788999998643
No 77
>PLN02846 digalactosyldiacylglycerol synthase
Probab=63.65 E-value=12 Score=36.15 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=31.3
Q ss_pred CCceEEEEeCCCc----cChHHHHHHHHHHhhCC-CEEEEEeCcc
Q 022744 12 KRVHCLVLSYPAQ----GHINPLLQFAKRLEHKG-LKVTLVTTYF 51 (292)
Q Consensus 12 ~~~hvv~~p~p~~----GH~~P~l~La~~La~rG-~~VT~itt~~ 51 (292)
+++||++|+-... |=..-.+.++..|+++| |+||++.+..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 4689999975543 66466677888999999 8999998754
No 78
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=63.62 E-value=16 Score=28.34 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=31.0
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCccccccc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~ 56 (292)
||++.-..+.+=.. ..++.++|.++|++|+++.|+...+-+
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 56666666655555 999999999999999999998755433
No 79
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=63.33 E-value=11 Score=30.93 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=24.7
Q ss_pred CccChHHHHHHHHHHhhCCCEEEEEe
Q 022744 23 AQGHINPLLQFAKRLEHKGLKVTLVT 48 (292)
Q Consensus 23 ~~GH~~P~l~La~~La~rG~~VT~it 48 (292)
.-||-.....|++.|+++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 66999999999999999999999988
No 80
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=61.66 E-value=30 Score=29.05 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=24.3
Q ss_pred CccEE-EeCCCCc-cHHHHHHHhCCCcEEEeccc
Q 022744 115 PVDCI-VYDSFLP-WALDVAKKFGLVGAAFLTQS 146 (292)
Q Consensus 115 ~~d~i-I~D~~~~-~~~~vA~~lgiP~v~f~~~~ 146 (292)
.||+| |.|.... .+..-|.++|||.+.+.-+.
T Consensus 127 ~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 127 LPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 45765 4576654 67889999999999987665
No 81
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=58.29 E-value=17 Score=34.90 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=27.8
Q ss_pred ceEEEEeCC------CccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 14 VHCLVLSYP------AQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 14 ~hvv~~p~p------~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
+||+++++= .-|=-.-+-.|+++|+++||+|+++++..
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 356666543 22444556899999999999999999754
No 82
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=57.73 E-value=16 Score=32.69 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=26.4
Q ss_pred CccChHHHHHHHHHHhhCCCEEEEEeCccc
Q 022744 23 AQGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 23 ~~GH~~P~l~La~~La~rG~~VT~itt~~~ 52 (292)
.-|.-.-+.+|++.|.++||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPE 42 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 558888899999999999999999988654
No 83
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=57.34 E-value=19 Score=30.36 Aligned_cols=38 Identities=16% Similarity=0.031 Sum_probs=34.8
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCc
Q 022744 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (292)
Q Consensus 13 ~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~ 50 (292)
+.++++.+.++-.|-....-++..|..+|++|+++...
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 57999999999999999999999999999999987654
No 84
>PRK06321 replicative DNA helicase; Provisional
Probab=56.46 E-value=55 Score=31.69 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=33.6
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhh-CCCEEEEEeCcccccc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFISKS 55 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~-rG~~VT~itt~~~~~~ 55 (292)
=+++-.-|+.|=..-.+++|+..+. .|..|-|++.+-...+
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~q 269 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQ 269 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHH
Confidence 3567788999999999999999985 6899999988764433
No 85
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=56.44 E-value=1.2e+02 Score=26.88 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=20.0
Q ss_pred HHHHHHHHhhCCCEEEEEeCcccccccc
Q 022744 30 LLQFAKRLEHKGLKVTLVTTYFISKSLH 57 (292)
Q Consensus 30 ~l~La~~La~rG~~VT~itt~~~~~~~~ 57 (292)
+..|++.|++ +++|+++.+...++...
T Consensus 16 i~aL~~~l~~-~~~V~VvAP~~~qSg~g 42 (253)
T PRK13935 16 IIILAEYLSE-KHEVFVVAPDKERSATG 42 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCcccc
Confidence 5678888865 57999998888765443
No 86
>PRK08760 replicative DNA helicase; Provisional
Probab=55.97 E-value=31 Score=33.46 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=33.7
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhh-CCCEEEEEeCcccccc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFISKS 55 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~-rG~~VT~itt~~~~~~ 55 (292)
=+++..-|+.|=..-.+++|+..+. .|..|-|++.+-....
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~q 272 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQ 272 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHH
Confidence 4677788999999999999999985 5999999988764433
No 87
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=55.96 E-value=1.3e+02 Score=26.68 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=20.8
Q ss_pred HHHHHHHHhhCCCEEEEEeCccccccc
Q 022744 30 LLQFAKRLEHKGLKVTLVTTYFISKSL 56 (292)
Q Consensus 30 ~l~La~~La~rG~~VT~itt~~~~~~~ 56 (292)
+..|++.|. .+.+||++.+..+++..
T Consensus 16 i~aL~~al~-~~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 16 IRALARALR-EGADVTVVAPDREQSGA 41 (252)
T ss_pred HHHHHHHHh-hCCCEEEEccCCCCccc
Confidence 456778887 99999999999877644
No 88
>PRK05595 replicative DNA helicase; Provisional
Probab=55.95 E-value=32 Score=32.89 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=33.7
Q ss_pred eEEEEeCCCccChHHHHHHHHHHh-hCCCEEEEEeCcccccc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLE-HKGLKVTLVTTYFISKS 55 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La-~rG~~VT~itt~~~~~~ 55 (292)
=+++-.-|+.|=..-.+++|..++ ++|..|-|++.+-...+
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~ 244 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQ 244 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHH
Confidence 356678899999999999999987 57999999998764443
No 89
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=55.07 E-value=1.8e+02 Score=27.44 Aligned_cols=109 Identities=8% Similarity=0.005 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhC--CCEEEEEeCcccccc------cccCCC-CCCCCeeEEEcc---CCCCCCCCCCccCHHHHHHHHH
Q 022744 28 NPLLQFAKRLEHK--GLKVTLVTTYFISKS------LHRDSS-SPSTSISLEAIS---DGYDEGGSAQTEGVEAYLERFW 95 (292)
Q Consensus 28 ~P~l~La~~La~r--G~~VT~itt~~~~~~------~~~~~~-~~~~~i~~~~l~---~~~~~~~~~~~~~~~~~~~~~~ 95 (292)
--+.+.++.|.++ ||+||++|+...... ..+.-. ....+++++.+. .-++.......... ...+.
T Consensus 18 rvl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~ 94 (419)
T cd03806 18 RVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEASTYPRFTLL---GQALG 94 (419)
T ss_pred HHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccccCCceeeH---HHHHH
Confidence 3467888888887 899999998764421 111100 112356655442 12222111111111 11111
Q ss_pred HhCcHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHh-CCCcEEEeccc
Q 022744 96 QIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKF-GLVGAAFLTQS 146 (292)
Q Consensus 96 ~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~l-giP~v~f~~~~ 146 (292)
. +... ++.+.. ..||++|.+...+.+..+++.+ ++|.+.+.--+
T Consensus 95 ~-~~~~----~~~~~~--~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P 139 (419)
T cd03806 95 S-MILG----LEALLK--LVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYP 139 (419)
T ss_pred H-HHHH----HHHHHh--cCCCEEEEcCCcccHHHHHHHhcCCeEEEEecCC
Confidence 1 1111 222211 1369999888777777777764 67877755433
No 90
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=54.46 E-value=23 Score=29.83 Aligned_cols=43 Identities=9% Similarity=-0.146 Sum_probs=37.5
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCccccc
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISK 54 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~ 54 (292)
++.++++.+.++-.|-....-++..|.++|++|+++...-..+
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e 125 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPID 125 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHH
Confidence 4579999999999999999999999999999999987654433
No 91
>PRK06904 replicative DNA helicase; Validated
Probab=54.31 E-value=32 Score=33.34 Aligned_cols=42 Identities=10% Similarity=0.149 Sum_probs=34.3
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhh-CCCEEEEEeCccccccc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFISKSL 56 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~-rG~~VT~itt~~~~~~~ 56 (292)
=+++-.-|+.|=..-++.+|+..|. .|..|-|++.+-...++
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql 265 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQI 265 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 3666788999999999999999986 59999999887654433
No 92
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=54.02 E-value=21 Score=31.10 Aligned_cols=31 Identities=29% Similarity=0.274 Sum_probs=25.6
Q ss_pred CccChHHHHHHHHHHhhCCCEEEEEeCcccc
Q 022744 23 AQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (292)
Q Consensus 23 ~~GH~~P~l~La~~La~rG~~VT~itt~~~~ 53 (292)
.-|...-++.|++.|+++||+|++++.....
T Consensus 12 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 12 AGGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred CCChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3566677889999999999999999886643
No 93
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=53.80 E-value=17 Score=32.59 Aligned_cols=47 Identities=28% Similarity=0.270 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhcCCCCccEEEeCCCCcc-----HHHHHHHhCCCcEEEeccc
Q 022744 100 RSLCELVENMNGSGVPVDCIVYDSFLPW-----ALDVAKKFGLVGAAFLTQS 146 (292)
Q Consensus 100 ~~l~~~l~~l~~~~~~~d~iI~D~~~~~-----~~~vA~~lgiP~v~f~~~~ 146 (292)
..++++++++.++.+++-+||.|.|..- ..++|.+.+||+|++.-..
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~ 184 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQ 184 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechh
Confidence 4567777775554467889999999852 4677889999999976655
No 94
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=53.68 E-value=35 Score=31.70 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.1
Q ss_pred cChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 25 GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 25 GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
|--.-..+|++.|+++||+|+++++..
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~ 41 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAY 41 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccC
Confidence 455678999999999999999999753
No 95
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=53.56 E-value=8.9 Score=35.65 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=18.8
Q ss_pred chhhhhhhccCCCCcEEEEEeCccc
Q 022744 267 NESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 267 ~~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
+.++..||++ .+.+|||+|||.+
T Consensus 228 ~~~~~~~~~~--~~~~v~v~~Gs~~ 250 (401)
T cd03784 228 PPELWLFLAA--GRPPVYVGFGSMV 250 (401)
T ss_pred CHHHHHHHhC--CCCcEEEeCCCCc
Confidence 4678899986 4679999999974
No 96
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=53.53 E-value=23 Score=31.03 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=27.0
Q ss_pred ccChHHHHHHHHHHhhCCCEEEEEeCcccc
Q 022744 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (292)
Q Consensus 24 ~GH~~P~l~La~~La~rG~~VT~itt~~~~ 53 (292)
-|+..-+..|++.|.+.||+|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~ 43 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 689999999999999999999999987643
No 97
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=53.44 E-value=22 Score=31.01 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=27.3
Q ss_pred CccChHHHHHHHHHHhhCCCEEEEEeCcccc
Q 022744 23 AQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (292)
Q Consensus 23 ~~GH~~P~l~La~~La~rG~~VT~itt~~~~ 53 (292)
.-|+..-+..|++.|+++||+|++++.....
T Consensus 11 ~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~ 41 (353)
T cd03811 11 GGGAERVLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred CCCcchhHHHHHHHHHhcCceEEEEEcCCCC
Confidence 6788899999999999999999999876643
No 98
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=52.01 E-value=29 Score=26.65 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=33.7
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
|+++...++-.|-.-..-++..|..+|++|.+..+..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 5899999999999999999999999999999987653
No 99
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=51.36 E-value=20 Score=31.56 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=39.7
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCccccccccc
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHR 58 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~ 58 (292)
+..-++++=-||.|=..=...++.+|..+|++|+|++++.....++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 34568888899988888899999999999999999999987766653
No 100
>PLN02316 synthase/transferase
Probab=51.17 E-value=31 Score=36.70 Aligned_cols=45 Identities=9% Similarity=0.192 Sum_probs=32.6
Q ss_pred cccCCCceEEEEeC-----CCccChH-HHHHHHHHHhhCCCEEEEEeCccc
Q 022744 8 AASCKRVHCLVLSY-----PAQGHIN-PLLQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 8 ~~~~~~~hvv~~p~-----p~~GH~~-P~l~La~~La~rG~~VT~itt~~~ 52 (292)
....+++||++++. .-.|-+. -...|+++|+++||+|.++++...
T Consensus 582 ~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 582 IAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred CCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 33456789998863 2234443 447899999999999999998653
No 101
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=50.02 E-value=29 Score=29.13 Aligned_cols=40 Identities=23% Similarity=0.167 Sum_probs=28.6
Q ss_pred HHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEcc
Q 022744 30 LLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (292)
Q Consensus 30 ~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~ 73 (292)
.-+|+.+|+++|++||+.+.....+.-. ....+++.+.+|
T Consensus 23 ve~L~~~l~~~g~~v~Vyc~~~~~~~~~----~~y~gv~l~~i~ 62 (185)
T PF09314_consen 23 VEELAPRLVSKGIDVTVYCRSDYYPYKE----FEYNGVRLVYIP 62 (185)
T ss_pred HHHHHHHHhcCCceEEEEEccCCCCCCC----cccCCeEEEEeC
Confidence 4578899999999999987765443211 135688888876
No 102
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=49.09 E-value=18 Score=30.27 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=19.9
Q ss_pred eCCCccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 20 SYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 20 p~p~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
.-++.|.+ -..||+.+..||++||+++.+.
T Consensus 24 tN~SSG~~--G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 24 TNRSSGKM--GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp EES--SHH--HHHHHHHHHHTT-EEEEEE-TT
T ss_pred cCCCcCHH--HHHHHHHHHHCCCEEEEEecCc
Confidence 33444443 3578999999999999999885
No 103
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=49.08 E-value=1.4e+02 Score=24.34 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=39.2
Q ss_pred EEEEeCCCccChHHHHHHHHHHhhCCCEEEE---EeCcccccccccCCCCCCCCeeEEEccCC
Q 022744 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTL---VTTYFISKSLHRDSSSPSTSISLEAISDG 75 (292)
Q Consensus 16 vv~~p~p~~GH~~P~l~La~~La~rG~~VT~---itt~~~~~~~~~~~~~~~~~i~~~~l~~~ 75 (292)
|.+..-++.|=....+.+|.+.+.+|++|.| +-........... ...+++++.....+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l--~~l~~v~~~~~g~~ 65 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKAL--ERLPNIEIHRMGRG 65 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHH--HhCCCcEEEECCCC
Confidence 6677888999999999999999999999998 4442111100000 01257888876543
No 104
>PRK07773 replicative DNA helicase; Validated
Probab=49.07 E-value=66 Score=33.85 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=33.9
Q ss_pred EEEEeCCCccChHHHHHHHHHHhh-CCCEEEEEeCccccccc
Q 022744 16 CLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFISKSL 56 (292)
Q Consensus 16 vv~~p~p~~GH~~P~l~La~~La~-rG~~VT~itt~~~~~~~ 56 (292)
+++..-|+.|=..-.+++|...+. +|..|.|++.+-...++
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 677788999999999999999986 48899999987654443
No 105
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=48.22 E-value=17 Score=34.64 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=21.6
Q ss_pred cChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 25 GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 25 GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
|=-.-.-.|+++|+++||+|+++++..
T Consensus 17 Gl~~~~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 17 GLGDVVGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 333445789999999999999999754
No 106
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=48.18 E-value=1.2e+02 Score=24.87 Aligned_cols=95 Identities=12% Similarity=0.162 Sum_probs=56.4
Q ss_pred HHHHHHHHhhCCCEEEEEeCccc-ccccccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHH
Q 022744 30 LLQFAKRLEHKGLKVTLVTTYFI-SKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSLCELVEN 108 (292)
Q Consensus 30 ~l~La~~La~rG~~VT~itt~~~-~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 108 (292)
+..|.+...++|.+|.++.+... .+++...+....|+++++...++.-+ ....+++++.
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~--------------------~~~~~~i~~~ 96 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFD--------------------EEEEEAIINR 96 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCC--------------------hhhHHHHHHH
Confidence 45666666778899999876542 23222222224678888865432100 1122344444
Q ss_pred hhcCCCCccEEEeCCCCc----cHHHHHHHhCCCcEEEeccch
Q 022744 109 MNGSGVPVDCIVYDSFLP----WALDVAKKFGLVGAAFLTQSC 147 (292)
Q Consensus 109 l~~~~~~~d~iI~D~~~~----~~~~vA~~lgiP~v~f~~~~a 147 (292)
+.++ .+|+|++-+-.+ |+....++++.+ +.+...++
T Consensus 97 I~~~--~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~ 136 (172)
T PF03808_consen 97 INAS--GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGA 136 (172)
T ss_pred HHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECch
Confidence 4432 459999988875 888888899888 44444443
No 107
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=47.97 E-value=16 Score=31.89 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 26 HINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 26 H~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
=-.-.-.|+++|+++||+|+++++..
T Consensus 18 Lgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 18 LGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 34556789999999999999999864
No 108
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=47.94 E-value=9.8 Score=19.87 Aligned_cols=18 Identities=22% Similarity=0.698 Sum_probs=14.9
Q ss_pred hhhhhhhccCCCCcEEEE
Q 022744 268 ESCIKWLNDRANGLLFIY 285 (292)
Q Consensus 268 ~~cl~WLD~q~~~SVvYV 285 (292)
-.|+.|..++...--+|.
T Consensus 3 ikCiNWFE~~ge~r~lyL 20 (22)
T PF08452_consen 3 IKCINWFESRGEERFLYL 20 (22)
T ss_pred cEEeehhhhCCceeEEEE
Confidence 579999999988777774
No 109
>PRK09165 replicative DNA helicase; Provisional
Probab=47.72 E-value=54 Score=31.94 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=33.5
Q ss_pred EEEEeCCCccChHHHHHHHHHHhhC---------------CCEEEEEeCccccccc
Q 022744 16 CLVLSYPAQGHINPLLQFAKRLEHK---------------GLKVTLVTTYFISKSL 56 (292)
Q Consensus 16 vv~~p~p~~GH~~P~l~La~~La~r---------------G~~VT~itt~~~~~~~ 56 (292)
+++..-|+.|=..-++++|...+.+ |..|.|++.+-...++
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 6777889999999999999999864 7889999887655443
No 110
>PRK05748 replicative DNA helicase; Provisional
Probab=47.52 E-value=78 Score=30.26 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=34.6
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhh-CCCEEEEEeCccccccc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFISKSL 56 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~-rG~~VT~itt~~~~~~~ 56 (292)
=+++-.-|+.|=..-.++++...+. +|..|-|++.+-...++
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 4677888999999999999999885 69999999887654433
No 111
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=47.01 E-value=27 Score=29.58 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=29.6
Q ss_pred ceEEEEeCCCccChHH-HHHHHHHHhhCCCEEEEEeCcccc
Q 022744 14 VHCLVLSYPAQGHINP-LLQFAKRLEHKGLKVTLVTTYFIS 53 (292)
Q Consensus 14 ~hvv~~p~p~~GH~~P-~l~La~~La~rG~~VT~itt~~~~ 53 (292)
.+|+ +-..|.+...- ..+|+++|.++|++|+++.|+...
T Consensus 6 k~Il-lgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 6 KRIG-FGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CEEE-EEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 3444 44555556666 699999999999999999988744
No 112
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.57 E-value=8 Score=32.59 Aligned_cols=19 Identities=42% Similarity=0.464 Sum_probs=15.1
Q ss_pred CchhhhhcccCCCceEEEE
Q 022744 1 MENIEKKAASCKRVHCLVL 19 (292)
Q Consensus 1 ~~~~~~~~~~~~~~hvv~~ 19 (292)
||||||+.++..+..+++=
T Consensus 142 ~eNIekvldRGekiELLVd 160 (217)
T KOG0859|consen 142 MENIEKVLDRGEKIELLVD 160 (217)
T ss_pred HHHHHHHHhccCeEEeeec
Confidence 6899999888777777764
No 113
>PLN02891 IMP cyclohydrolase
Probab=46.49 E-value=55 Score=32.08 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccC--CCCC
Q 022744 29 PLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD--GYDE 78 (292)
Q Consensus 29 P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~--~~~~ 78 (292)
=+.+||+.|.+.|++ +++|....+.++. .+|.+..+.+ |+|+
T Consensus 34 gi~~fAk~L~~~gve--IiSTgGTak~L~e------~Gi~v~~Vsd~TgfPE 77 (547)
T PLN02891 34 DLALLANGLQELGYT--IVSTGGTASALEA------AGVSVTKVEELTNFPE 77 (547)
T ss_pred CHHHHHHHHHHCCCE--EEEcchHHHHHHH------cCCceeeHHhccCCch
Confidence 378999999999865 7788877766653 3788877764 6776
No 114
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=46.22 E-value=44 Score=23.60 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=28.5
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHhhCCCEEEE
Q 022744 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTL 46 (292)
Q Consensus 14 ~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~ 46 (292)
.-+|++.-....|..=+-+||+.|+++|+.|..
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFA 48 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEE
Confidence 457777778889999999999999999988764
No 115
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=45.98 E-value=45 Score=28.55 Aligned_cols=40 Identities=10% Similarity=0.005 Sum_probs=36.4
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
++.++++.+.++-.|-+...-++..|..+|++|+++...-
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v 126 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV 126 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 4679999999999999999999999999999999987654
No 116
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=45.74 E-value=53 Score=27.60 Aligned_cols=42 Identities=33% Similarity=0.524 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccC--CCCC
Q 022744 29 PLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD--GYDE 78 (292)
Q Consensus 29 P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~--~~~~ 78 (292)
=+.+||+.|.+.|+++ +.|....+.++. .+|....+.+ |+|+
T Consensus 12 ~l~~lAk~L~~lGf~I--~AT~GTAk~L~e------~GI~v~~V~k~TgfpE 55 (187)
T cd01421 12 GLVEFAKELVELGVEI--LSTGGTAKFLKE------AGIPVTDVSDITGFPE 55 (187)
T ss_pred cHHHHHHHHHHCCCEE--EEccHHHHHHHH------cCCeEEEhhhccCCcH
Confidence 4679999999999886 577766665553 3676666653 6665
No 117
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=45.57 E-value=21 Score=30.92 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=20.8
Q ss_pred cChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 25 GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 25 GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
-|+.-|.+.|..|.++|++|+++....
T Consensus 46 l~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 46 LFFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 367889999999999999999998874
No 118
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=44.85 E-value=35 Score=33.24 Aligned_cols=42 Identities=26% Similarity=0.507 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccC--CCCC
Q 022744 29 PLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD--GYDE 78 (292)
Q Consensus 29 P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~--~~~~ 78 (292)
=+.+|++.|.+.|++| +.|....+.++. .+|.+..+.+ |+|+
T Consensus 12 ~iv~lAk~L~~lGfeI--iATgGTak~L~e------~GI~v~~Vsk~TgfPE 55 (511)
T TIGR00355 12 GIVEFAQGLVERGVEL--LSTGGTAKLLAE------AGVPVTEVSDYTGFPE 55 (511)
T ss_pred cHHHHHHHHHHCCCEE--EEechHHHHHHH------CCCeEEEeecccCCch
Confidence 3678999999999886 577766665553 3676666553 6666
No 119
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=44.14 E-value=2.3e+02 Score=25.13 Aligned_cols=98 Identities=15% Similarity=0.079 Sum_probs=49.4
Q ss_pred HHHHHHHHhhC---CCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHH
Q 022744 30 LLQFAKRLEHK---GLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSLCELV 106 (292)
Q Consensus 30 ~l~La~~La~r---G~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 106 (292)
+..|++.|.+. |++|+++.+...++....+.. -...+++..+.++ .+.- ...+.- .+.-.+
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT-~~~pl~~~~~~~~----~yav-~GTPaD----------CV~lal 79 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCIS-YTHPMMIAELGPR----RFAA-EGSPAD----------CVLAAL 79 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCccccc-CCCCeEEEEeCCC----eEEE-cCchHH----------HHHHHH
Confidence 45677777663 369999998887654433211 1124555554321 0110 011100 111112
Q ss_pred HHhhcCCCCccEEEe----------CCCCcc---HHHHHHHhCCCcEEEec
Q 022744 107 ENMNGSGVPVDCIVY----------DSFLPW---ALDVAKKFGLVGAAFLT 144 (292)
Q Consensus 107 ~~l~~~~~~~d~iI~----------D~~~~~---~~~vA~~lgiP~v~f~~ 144 (292)
..+... .+||+||+ |.+++- +..-|.-+|||.+.|+.
T Consensus 80 ~~~~~~-~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 80 YDVMKD-APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHhcCC-CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 222211 34699987 444332 34455678999999985
No 120
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=43.45 E-value=33 Score=23.86 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhCCCEEEEEeCccc
Q 022744 29 PLLQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 29 P~l~La~~La~rG~~VT~itt~~~ 52 (292)
.-+++|..|+++|.+||++.....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 457899999999999999887653
No 121
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=43.35 E-value=64 Score=29.18 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=21.7
Q ss_pred CCCccChHHHHHHHHHHhhC-CCEEEEEeCcc
Q 022744 21 YPAQGHINPLLQFAKRLEHK-GLKVTLVTTYF 51 (292)
Q Consensus 21 ~p~~GH~~P~l~La~~La~r-G~~VT~itt~~ 51 (292)
........=+..|.++|.++ |+++.++.|..
T Consensus 6 ~gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~ 37 (363)
T cd03786 6 TGTRPEYIKLAPLIRALKKDPGFELVLVVTGQ 37 (363)
T ss_pred EecCHHHHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 34445555566777888886 89999877753
No 122
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=42.54 E-value=25 Score=27.36 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCCCCccEEEeCCCCc--cHHHHHHHhCCCcEEEec
Q 022744 100 RSLCELVENMNGSGVPVDCIVYDSFLP--WALDVAKKFGLVGAAFLT 144 (292)
Q Consensus 100 ~~l~~~l~~l~~~~~~~d~iI~D~~~~--~~~~vA~~lgiP~v~f~~ 144 (292)
+..++.++++... .+|.+||++-+.. +...+|++.|+|.....-
T Consensus 68 ~~r~~~l~~l~~~-~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 68 EERKERLEKLFSY-NPPCIIVTRGLEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp HHHCCHHHHHCTT-T-S-EEEETTT---HHHHHHHHHCT--EEEESS
T ss_pred HHHHHHHHHHhCC-CCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCC
Confidence 3444567777654 4567888887763 789999999999987544
No 123
>PRK05636 replicative DNA helicase; Provisional
Probab=42.04 E-value=55 Score=32.03 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=33.2
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhh-CCCEEEEEeCcccccc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFISKS 55 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~-rG~~VT~itt~~~~~~ 55 (292)
=+++-.-|+.|=..-.+++|+..+. +|..|-|++.+-...+
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~q 308 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSE 308 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHH
Confidence 4577888999999999999999884 6888989887765433
No 124
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=41.59 E-value=64 Score=27.35 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcC--CCCccEEEeCCCCccHHHHHHHhCCCcEEEeccc
Q 022744 101 SLCELVENMNGS--GVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQS 146 (292)
Q Consensus 101 ~l~~~l~~l~~~--~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~ 146 (292)
.|+.++++.... +..+.+||+|----.+..-|++.|||.+++..-.
T Consensus 13 Nlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~ 60 (200)
T COG0299 13 NLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKE 60 (200)
T ss_pred cHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEecccc
Confidence 456666655321 1247899999877789999999999998875544
No 125
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=41.41 E-value=66 Score=24.90 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhhCCCEEEEEeCccc
Q 022744 27 INPLLQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 27 ~~P~l~La~~La~rG~~VT~itt~~~ 52 (292)
-...+.|+++..+|||+|.+++....
T Consensus 17 kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 17 KDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp T-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 34577899999999999999887653
No 126
>PRK07004 replicative DNA helicase; Provisional
Probab=41.24 E-value=1.1e+02 Score=29.48 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=34.2
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhh-CCCEEEEEeCccccccc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFISKSL 56 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~-rG~~VT~itt~~~~~~~ 56 (292)
=+++-.-|+.|=..-++++|..++. .|..|-|++.+-...++
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQL 257 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 3667788999999999999999985 69999999887654433
No 127
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=40.45 E-value=52 Score=26.41 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=34.8
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeC
Q 022744 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTT 49 (292)
Q Consensus 11 ~~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt 49 (292)
..+++|++.+...-||=.=.--+++.|++.|++|.....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 368999999999999999999999999999999987443
No 128
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=40.29 E-value=29 Score=29.37 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhCCCEEEEEeCccccccc
Q 022744 29 PLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (292)
Q Consensus 29 P~l~La~~La~rG~~VT~itt~~~~~~~ 56 (292)
=+..|++.|.+.||+|+++.+..+++..
T Consensus 15 Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 15 GIRALAKALSALGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp HHHHHHHHHTTTSSEEEEEEESSSTTTS
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCcCc
Confidence 3678999998888999999998876543
No 129
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=39.48 E-value=40 Score=29.57 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=27.4
Q ss_pred CccChHHHHHHHHHHhhCCCEEEEEeCcccc
Q 022744 23 AQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (292)
Q Consensus 23 ~~GH~~P~l~La~~La~rG~~VT~itt~~~~ 53 (292)
..|+..-+..+++.|++.||+|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 4789999999999999999999999987644
No 130
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=39.33 E-value=2.2e+02 Score=23.59 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=42.5
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEcc
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~ 73 (292)
+.++|.+.-.|+.|-..-.+.++..|.++|++|-=+.|+....- ...-+++.+.+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~g------GkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREG------GKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecC------CeEeeeEEEEcc
Confidence 36789999999999999999999999999999985444442321 112478888775
No 131
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.47 E-value=32 Score=27.05 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=25.0
Q ss_pred cChHHHHHHHHHHhhCCCEEEEEeCcccccc
Q 022744 25 GHINPLLQFAKRLEHKGLKVTLVTTYFISKS 55 (292)
Q Consensus 25 GH~~P~l~La~~La~rG~~VT~itt~~~~~~ 55 (292)
-.+-..+-++.+|-++|++||+..++...+.
T Consensus 16 ~qissaiYls~klkkkgf~v~VaateAa~kL 46 (148)
T COG4081 16 PQISSAIYLSHKLKKKGFDVTVAATEAALKL 46 (148)
T ss_pred ccchHHHHHHHHhhccCccEEEecCHhhhee
Confidence 4455678899999999999999998875543
No 132
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=38.27 E-value=40 Score=22.95 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=16.9
Q ss_pred HHHHHHHhhCCCEEEEEeCcc
Q 022744 31 LQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 31 l~La~~La~rG~~VT~itt~~ 51 (292)
+..|..|+++|++||++=...
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHCCCcEEEEecCc
Confidence 567899999999999975443
No 133
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=37.80 E-value=1.9e+02 Score=26.33 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=35.2
Q ss_pred HhCcHHHHHHHHHhhcCCCCccEEEeCCCCc--cHHHHHHHhCCCcEEEeccch
Q 022744 96 QIGPRSLCELVENMNGSGVPVDCIVYDSFLP--WALDVAKKFGLVGAAFLTQSC 147 (292)
Q Consensus 96 ~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~--~~~~vA~~lgiP~v~f~~~~a 147 (292)
+...+..++.++++.+. .+|.+||++-+.. +...+|++.++|.+...-.+.
T Consensus 65 ~l~~e~~~~~~~~~~~~-~~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t~~~~~ 117 (304)
T TIGR00679 65 QLPEEEQKQIIHNLLTL-NPPAIILSKSFTDPTVLLQVNETYQVPILKTDLFST 117 (304)
T ss_pred hCCHHHHHHHHHHHhCC-CCCEEEEECcCCCCHHHHHHHHHhCCcEEEeCCcHH
Confidence 33334555667777664 4556788876653 789999999999998655543
No 134
>PLN02939 transferase, transferring glycosyl groups
Probab=37.25 E-value=68 Score=33.95 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=31.3
Q ss_pred CCCceEEEEeC-----CCc-cChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 11 CKRVHCLVLSY-----PAQ-GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 11 ~~~~hvv~~p~-----p~~-GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
++++||++++. .-. |=-.-.-.|.++|+++||+|.+|++..
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 45789998854 333 334556689999999999999999865
No 135
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=37.06 E-value=39 Score=30.17 Aligned_cols=31 Identities=10% Similarity=0.187 Sum_probs=26.7
Q ss_pred CCccChHHHHHHHHHHhhCCCEEEEEeCccc
Q 022744 22 PAQGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 22 p~~GH~~P~l~La~~La~rG~~VT~itt~~~ 52 (292)
..-|.-.-+..|++.|+++||+||+++....
T Consensus 10 ~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~ 40 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRSKIQFDFLVTSKE 40 (358)
T ss_pred CCccHHHHHHHHHHhcCccceEEEEEEeCCC
Confidence 4568888899999999999999999987653
No 136
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=36.60 E-value=51 Score=31.49 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=24.9
Q ss_pred EEEeCCCccChHHHHHHHHHHhhCCCEEEE
Q 022744 17 LVLSYPAQGHINPLLQFAKRLEHKGLKVTL 46 (292)
Q Consensus 17 v~~p~p~~GH~~P~l~La~~La~rG~~VT~ 46 (292)
+.-|-.+.|-..-.+.|++.|++||++|.-
T Consensus 5 IAg~~SG~GKTTvT~glm~aL~~rg~~Vqp 34 (451)
T COG1797 5 IAGTSSGSGKTTVTLGLMRALRRRGLKVQP 34 (451)
T ss_pred EecCCCCCcHHHHHHHHHHHHHhcCCcccc
Confidence 334556789999999999999999999864
No 137
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.00 E-value=1.1e+02 Score=28.47 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=45.7
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCccc--ccccccCCCCCCCCeeEEEccC
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFI--SKSLHRDSSSPSTSISLEAISD 74 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~--~~~~~~~~~~~~~~i~~~~l~~ 74 (292)
++.|++++-..-.||--=|.-=|.-||+.|+.|+++.-... .+.+- ++++|+++.++.
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~-----~hprI~ih~m~~ 70 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELL-----NHPRIRIHGMPN 70 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHh-----cCCceEEEeCCC
Confidence 46789999999999998899999999999999999764432 22222 368999999873
No 138
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=35.93 E-value=62 Score=31.62 Aligned_cols=44 Identities=30% Similarity=0.468 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccC--CCCC
Q 022744 27 INPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD--GYDE 78 (292)
Q Consensus 27 ~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~--~~~~ 78 (292)
-.=+++||+.|.+.|++| +.|....+.++. .+|.+..+.+ |+|+
T Consensus 14 K~~iv~lAk~L~~lGfeI--~AT~GTak~L~e------~GI~v~~V~k~TgfpE 59 (513)
T PRK00881 14 KTGIVEFAKALVELGVEI--LSTGGTAKLLAE------AGIPVTEVSDVTGFPE 59 (513)
T ss_pred cccHHHHHHHHHHCCCEE--EEcchHHHHHHH------CCCeeEEeecccCCch
Confidence 344789999999999886 567666665543 3666665543 6665
No 139
>PRK14098 glycogen synthase; Provisional
Probab=35.86 E-value=65 Score=31.25 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=31.7
Q ss_pred cCCCceEEEEeCCC------ccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 10 SCKRVHCLVLSYPA------QGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 10 ~~~~~hvv~~p~p~------~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
+++.++|++++.-. -|=-.-+-.|.+.|+++||+|.++.+..
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 44558888876432 2555667889999999999999999854
No 140
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=35.86 E-value=36 Score=30.40 Aligned_cols=99 Identities=13% Similarity=0.028 Sum_probs=53.8
Q ss_pred ccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHH
Q 022744 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSLC 103 (292)
Q Consensus 24 ~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (292)
-|--.-..+||+.|+++||+|++++......... ...+++++.++- .. ......+..+ ..+.
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~-----~~~~~~~~~~~~--~~------~~~~~~~~~~-----~~l~ 71 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRLVAEL-----EAEGSRHIKLPF--IS------KNPLRILLNV-----ARLR 71 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHH-----HhcCCeEEEccc--cc------cchhhhHHHH-----HHHH
Confidence 4566778899999999999999998654221100 113566655431 11 0111111111 1123
Q ss_pred HHHHHhhcCCCCccEEEeCCCC-ccHH-HHHHHhCCCcEEEecc
Q 022744 104 ELVENMNGSGVPVDCIVYDSFL-PWAL-DVAKKFGLVGAAFLTQ 145 (292)
Q Consensus 104 ~~l~~l~~~~~~~d~iI~D~~~-~~~~-~vA~~lgiP~v~f~~~ 145 (292)
..+++ .++|+|++.... .|.. .+++..++|.+..+..
T Consensus 72 ~~~~~-----~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 110 (355)
T cd03819 72 RLIRE-----EKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHG 110 (355)
T ss_pred HHHHH-----cCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCC
Confidence 33332 246998886543 4544 4456778998865443
No 141
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=35.27 E-value=72 Score=24.05 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=30.4
Q ss_pred EEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCccccc
Q 022744 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISK 54 (292)
Q Consensus 16 vv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~ 54 (292)
-+++-+...|+...++++++.+.++|..|..+|.....+
T Consensus 55 d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 55 DLVIIISYSGETRELIELLRFAKERGAPVILITSNSESP 93 (131)
T ss_dssp EEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSH
T ss_pred ceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCc
Confidence 334444478899999999999999999998888766543
No 142
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=35.18 E-value=15 Score=33.35 Aligned_cols=23 Identities=4% Similarity=0.137 Sum_probs=19.3
Q ss_pred hhhhhhhccCCCCcEEEEEeCccc
Q 022744 268 ESCIKWLNDRANGLLFIYHLGVWQ 291 (292)
Q Consensus 268 ~~cl~WLD~q~~~SVvYVsFGS~~ 291 (292)
.+.++|+.+. ..|++|||||.++
T Consensus 125 ~~i~~w~~~~-~~s~LgICwGaQa 147 (302)
T PRK05368 125 KEILDWAKTH-VTSTLFICWAAQA 147 (302)
T ss_pred HHHHHHHHHc-CCCEEEEcHHHHH
Confidence 5679999987 6799999999764
No 143
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=35.04 E-value=58 Score=31.58 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=33.3
Q ss_pred CCceEEEEeCCCccChHHH------------HHHHHHHhhCCCEEEEEeCccc
Q 022744 12 KRVHCLVLSYPAQGHINPL------------LQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~------------l~La~~La~rG~~VT~itt~~~ 52 (292)
+..+|++..-|..=-+.|. ..||+.++.+|++||+|+.+..
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 3568888888888777776 4789999999999999997653
No 144
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.89 E-value=3.7e+02 Score=24.78 Aligned_cols=108 Identities=18% Similarity=0.199 Sum_probs=64.1
Q ss_pred CCCccChHHHHHHHHHHhhCCCEEEEEeCccc-ccccccCCCCCCCCeeEEEccCCCCCCCCCCccCHH-HHHHHHHHhC
Q 022744 21 YPAQGHINPLLQFAKRLEHKGLKVTLVTTYFI-SKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVE-AYLERFWQIG 98 (292)
Q Consensus 21 ~p~~GH~~P~l~La~~La~rG~~VT~itt~~~-~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~ 98 (292)
..-.-|+--+-.|-+.|.++||+|-+.+-+.. ..++-+ .-++.+..+... + ...+. .+.....+.
T Consensus 7 I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd-----~ygf~~~~Igk~----g---~~tl~~Kl~~~~eR~- 73 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLD-----LYGFPYKSIGKH----G---GVTLKEKLLESAERV- 73 (346)
T ss_pred cCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHH-----HhCCCeEeeccc----C---CccHHHHHHHHHHHH-
Confidence 33445777789999999999999876443321 112211 135666665421 1 11222 222222221
Q ss_pred cHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccchH
Q 022744 99 PRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCV 148 (292)
Q Consensus 99 ~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 148 (292)
..|.+++.+ .++|+.|. ...+-+..+|--+|+|.++|.-..-+
T Consensus 74 -~~L~ki~~~-----~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 74 -YKLSKIIAE-----FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred -HHHHHHHhh-----cCCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 234444443 24589888 66778999999999999998776533
No 145
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=34.26 E-value=56 Score=24.65 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=31.7
Q ss_pred cCCCceEEEEeCCCccChHHHHHHHHHHhhCCC-EEEEEeC
Q 022744 10 SCKRVHCLVLSYPAQGHINPLLQFAKRLEHKGL-KVTLVTT 49 (292)
Q Consensus 10 ~~~~~hvv~~p~p~~GH~~P~l~La~~La~rG~-~VT~itt 49 (292)
...+++++.++.....|.....++++.|.+++. ++.++..
T Consensus 47 ~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 47 KEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred HHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 344778888888888899999999999999877 6765543
No 146
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=34.04 E-value=3.6e+02 Score=25.22 Aligned_cols=101 Identities=18% Similarity=0.051 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHhh--CCCEEE---EEeCcccccc-cccCCCCCCCCeeEEEccCCCCCCCCCCccCHHHHHHHHHH-hCc
Q 022744 27 INPLLQFAKRLEH--KGLKVT---LVTTYFISKS-LHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQ-IGP 99 (292)
Q Consensus 27 ~~P~l~La~~La~--rG~~VT---~itt~~~~~~-~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 99 (292)
=.-.+.+|++|.+ .|++|. ++.+..-.++ .- ...+ .+..+| ..++.. ......+..+.+ ...
T Consensus 10 d~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~i-----p~~g-~~~~~~----sgg~~~-~~~~~~~~~~~~gl~~ 78 (396)
T TIGR03492 10 DLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGI-----PIIG-PTKELP----SGGFSY-QSLRGLLRDLRAGLVG 78 (396)
T ss_pred HHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCC-----ceeC-CCCCCC----CCCccC-CCHHHHHHHHHhhHHH
Confidence 3456788999998 699999 8887754321 10 0012 344444 223321 122222212211 111
Q ss_pred HHHH--HHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEE
Q 022744 100 RSLC--ELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAF 142 (292)
Q Consensus 100 ~~l~--~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f 142 (292)
..++ .+++++. +++|+||.=--+. ....|...|+|.+++
T Consensus 79 ~~~~~~~~~~~~~---~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~ 119 (396)
T TIGR03492 79 LTLGQWRALRKWA---KKGDLIVAVGDIV-PLLFAWLSGKPYAFV 119 (396)
T ss_pred HHHHHHHHHHHHh---hcCCEEEEECcHH-HHHHHHHcCCCceEE
Confidence 1122 2244432 2458887732222 677788889999983
No 147
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=33.27 E-value=66 Score=26.80 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=29.1
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCccccc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISK 54 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~ 54 (292)
+|++.-..+.|= .-..++.++|.++|++|.++.|+...+
T Consensus 3 ~Ill~vtGsiaa-~~~~~li~~L~~~g~~V~vv~T~~A~~ 41 (182)
T PRK07313 3 NILLAVSGSIAA-YKAADLTSQLTKRGYQVTVLMTKAATK 41 (182)
T ss_pred EEEEEEeChHHH-HHHHHHHHHHHHCCCEEEEEEChhHHH
Confidence 455554444444 448999999999999999999887544
No 148
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=33.11 E-value=64 Score=27.10 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=27.3
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~ 53 (292)
||++--..+.|=+--.+++.++|.+.|++|+++.|+...
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 344444444444444469999999999999999887643
No 149
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=33.09 E-value=75 Score=28.45 Aligned_cols=53 Identities=8% Similarity=0.157 Sum_probs=42.4
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhC--CCEEEEEeCcccccccccCCCCCCCCee-EEEc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHK--GLKVTLVTTYFISKSLHRDSSSPSTSIS-LEAI 72 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~r--G~~VT~itt~~~~~~~~~~~~~~~~~i~-~~~l 72 (292)
+|+++-+.+.|-+.-...+.+.|.++ +.+||+++.+.+.+-++ ..+.|+ ++.+
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~-----~~p~vd~v~~~ 56 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVR-----LHPAVDEVIPV 56 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhh-----cCCCccEEEEe
Confidence 58899999999999999999999996 89999999988765544 235665 3444
No 150
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=33.00 E-value=68 Score=28.12 Aligned_cols=33 Identities=12% Similarity=0.159 Sum_probs=27.6
Q ss_pred EeCCCccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 19 LSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 19 ~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
-.+..-|+-..+..|++.|.+.|++|.+++...
T Consensus 7 ~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~ 39 (365)
T cd03807 7 TGLDVGGAERMLVRLLKGLDRDRFEHVVISLTD 39 (365)
T ss_pred eeccCccHHHHHHHHHHHhhhccceEEEEecCc
Confidence 334446899999999999999999999988754
No 151
>PRK14099 glycogen synthase; Provisional
Probab=32.97 E-value=76 Score=30.73 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=30.3
Q ss_pred CCceEEEEeCCC------ccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 12 KRVHCLVLSYPA------QGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 12 ~~~hvv~~p~p~------~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
+++||++++.-. -|=-.-+-.|.+.|+++||+|.++++..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 457788775432 2555667889999999999999999854
No 152
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=32.86 E-value=1.1e+02 Score=28.02 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=40.1
Q ss_pred hhhcccCCCce-EEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccc
Q 022744 5 EKKAASCKRVH-CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKS 55 (292)
Q Consensus 5 ~~~~~~~~~~h-vv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~ 55 (292)
.+.+..+.+.| |-+.=.|+.|--.-.-.|.++|.++||+|-++..++..+.
T Consensus 42 ~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 42 RALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF 93 (323)
T ss_pred HHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence 34455555664 5566688999999999999999999999999988775543
No 153
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=32.39 E-value=1.4e+02 Score=26.18 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcCCCCccEEEeCCCCc--cHHHHHHHhCCCcEEEeccchHHHHHH
Q 022744 101 SLCELVENMNGSGVPVDCIVYDSFLP--WALDVAKKFGLVGAAFLTQSCVVDCIY 153 (292)
Q Consensus 101 ~l~~~l~~l~~~~~~~d~iI~D~~~~--~~~~vA~~lgiP~v~f~~~~a~~~~~~ 153 (292)
.+.++++.+.+ ..+.||+++.... .+..+|++.|++.+.+-+.+...+..|
T Consensus 205 ~l~~l~~~ik~--~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y~~~m 257 (266)
T cd01018 205 DLKRLIDLAKE--KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADWEENL 257 (266)
T ss_pred HHHHHHHHHHH--cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHHHHHH
Confidence 34455554433 3578999987765 577999999999988776654333333
No 154
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=32.20 E-value=91 Score=23.37 Aligned_cols=36 Identities=17% Similarity=-0.000 Sum_probs=31.7
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~ 50 (292)
+++....++-.|-.-..-++..|.++|++|.++...
T Consensus 1 ~~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~ 36 (125)
T cd02065 1 KVLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVD 36 (125)
T ss_pred CEEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCC
Confidence 467888899999999999999999999999988654
No 155
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=31.66 E-value=84 Score=28.28 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=37.8
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHhhC--CCEEEEEeCccccccc
Q 022744 14 VHCLVLSYPAQGHINPLLQFAKRLEHK--GLKVTLVTTYFISKSL 56 (292)
Q Consensus 14 ~hvv~~p~p~~GH~~P~l~La~~La~r--G~~VT~itt~~~~~~~ 56 (292)
+||+++-..+.|-+.-...+.+.|.++ +.+||+++.+.+.+.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~ 45 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIP 45 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHH
Confidence 379999999999999999999999996 8999999988765544
No 156
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=31.66 E-value=1.1e+02 Score=21.73 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=27.2
Q ss_pred ceEEEEeCCCc--cChHHHHHHHHHHhhCCCEEEEEe
Q 022744 14 VHCLVLSYPAQ--GHINPLLQFAKRLEHKGLKVTLVT 48 (292)
Q Consensus 14 ~hvv~~p~p~~--GH~~P~l~La~~La~rG~~VT~it 48 (292)
..++++|.... .+..-.+.++..|.+.|.+|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 46888887753 566778889999999999988743
No 157
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=31.22 E-value=79 Score=28.84 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=42.2
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhC--CCEEEEEeCcccccccccCCCCCCCCeeEEE
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHK--GLKVTLVTTYFISKSLHRDSSSPSTSISLEA 71 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~r--G~~VT~itt~~~~~~~~~~~~~~~~~i~~~~ 71 (292)
+|+++-..+.|-+.-.+.+.+.|.++ +.+||+++.+.+.+.++ ..+.|+-+.
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~-----~~P~vd~vi 55 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLS-----RMPEVNEAI 55 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHh-----cCCccCEEE
Confidence 69999999999999999999999995 89999999887665554 235565543
No 158
>PRK09620 hypothetical protein; Provisional
Probab=31.11 E-value=48 Score=28.73 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=21.2
Q ss_pred CCccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 22 PAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 22 p~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
.+.|.+- .+||++|.++|++||++....
T Consensus 26 ~SSGfiG--s~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 26 MAKGTIG--RIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred CCcCHHH--HHHHHHHHHCCCeEEEEeCCC
Confidence 3444443 689999999999999997553
No 159
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=30.81 E-value=65 Score=26.69 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=27.4
Q ss_pred EeCCCccChHHHHHHHHHHhhCCCEEEEEeCccccc
Q 022744 19 LSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISK 54 (292)
Q Consensus 19 ~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~ 54 (292)
+-..|.+...-..+|.+.|.++|++|.++.|+...+
T Consensus 5 lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~ 40 (177)
T TIGR02113 5 LAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQ 40 (177)
T ss_pred EEEcCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHh
Confidence 334445556677799999999999999999887543
No 160
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=30.47 E-value=86 Score=27.79 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 26 HINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 26 H~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
--.-+..+++.|.++||+|++++...
T Consensus 13 ~~~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 13 SETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEecC
Confidence 44568899999999999999998755
No 161
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=30.40 E-value=75 Score=28.10 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=24.6
Q ss_pred ccChHHHHHHHHHHhhCCCEEEEEeCccc
Q 022744 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 24 ~GH~~P~l~La~~La~rG~~VT~itt~~~ 52 (292)
-|--.-...|++.|+++||.|++++....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 13 CGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred CcHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 47777889999999999999999886553
No 162
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=30.25 E-value=34 Score=27.19 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHhhCCCEEEEEeCcccccccc
Q 022744 27 INPLLQFAKRLEHKGLKVTLVTTYFISKSLH 57 (292)
Q Consensus 27 ~~P~l~La~~La~rG~~VT~itt~~~~~~~~ 57 (292)
+--.+-|+.+|.++|++|++..++.....++
T Consensus 13 ~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 13 TPSALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 3446789999999999999999988665544
No 163
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=30.05 E-value=8.2 Score=22.86 Aligned_cols=23 Identities=30% Similarity=0.678 Sum_probs=16.2
Q ss_pred EeCCCccChHHHHHHHHHHhhCC
Q 022744 19 LSYPAQGHINPLLQFAKRLEHKG 41 (292)
Q Consensus 19 ~p~p~~GH~~P~l~La~~La~rG 41 (292)
=+||+||-+||-+++---|-..|
T Consensus 16 PTFPGqGP~NPKir~Pyplpn~g 38 (39)
T PF08026_consen 16 PTFPGQGPFNPKIRWPYPLPNPG 38 (39)
T ss_pred CcCCCCCCCCccccccccCCCCC
Confidence 36889999999877655554444
No 164
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=29.29 E-value=1.2e+02 Score=22.98 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=33.2
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
|+++.--++.|=......|++.|+++|.+|-++.++.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 5778888899999999999999999999999888876
No 165
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=29.13 E-value=69 Score=23.84 Aligned_cols=24 Identities=25% Similarity=0.616 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 28 NPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 28 ~P~l~La~~La~rG~~VT~itt~~ 51 (292)
.|.+.|++.|.++|.+|.+.=+..
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v 40 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYV 40 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTS
T ss_pred CHHHHHHHHHHHCCCEEEEECCcc
Confidence 588999999999999988865543
No 166
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=28.96 E-value=57 Score=28.19 Aligned_cols=31 Identities=29% Similarity=0.284 Sum_probs=22.1
Q ss_pred EEeCCCccChHHHHHHHHHHhhCCCEEEEEeCc
Q 022744 18 VLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (292)
Q Consensus 18 ~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~ 50 (292)
+++-.+.|-+ -.+||++|+++|++||++...
T Consensus 19 ~itN~SSG~i--G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 19 GITNHSTGQL--GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred eecCccchHH--HHHHHHHHHhCCCEEEEEECc
Confidence 4444455433 367899999999999998743
No 167
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=28.94 E-value=1.2e+02 Score=27.03 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=31.5
Q ss_pred cEEEeCCCCccH-------HHHHHHhCCCcEEEeccchHHHHHHHH
Q 022744 117 DCIVYDSFLPWA-------LDVAKKFGLVGAAFLTQSCVVDCIYYH 155 (292)
Q Consensus 117 d~iI~D~~~~~~-------~~vA~~lgiP~v~f~~~~a~~~~~~~~ 155 (292)
-++|+|.-++.. ...|++.||+.+.+...+|...+++.+
T Consensus 80 valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~S 125 (275)
T COG0313 80 VALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSAS 125 (275)
T ss_pred EEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHc
Confidence 489999888642 456789999999999999888877665
No 168
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=28.93 E-value=92 Score=27.41 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=24.3
Q ss_pred ccE-EEeCCCCc-cHHHHHHHhCCCcEEEeccc
Q 022744 116 VDC-IVYDSFLP-WALDVAKKFGLVGAAFLTQS 146 (292)
Q Consensus 116 ~d~-iI~D~~~~-~~~~vA~~lgiP~v~f~~~~ 146 (292)
||+ +|.|.-.- -+..-|+++|||.|.+.-+.
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 465 66788775 57788999999999976654
No 169
>PTZ00445 p36-lilke protein; Provisional
Probab=28.67 E-value=64 Score=27.78 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=23.4
Q ss_pred cChHH-HHHHHHHHhhCCCEEEEEeCccc
Q 022744 25 GHINP-LLQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 25 GH~~P-~l~La~~La~rG~~VT~itt~~~ 52 (292)
+|..| +..|.++|.++|..|+++|-...
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 56677 88999999999999999886543
No 170
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=28.49 E-value=4.2e+02 Score=23.44 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=39.0
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEccCCC
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGY 76 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l~~~~ 76 (292)
.+++|+++-+|+...-. +.++.|.+.|+.+.++........ . .....++.+.+|-|.
T Consensus 2 ~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~-~----~~l~~~DgLvipGGf 58 (261)
T PRK01175 2 ESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAE-R----KSVSDYDCLVIPGGF 58 (261)
T ss_pred CCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeecccccc-c----cchhhCCEEEECCCC
Confidence 35689999999997654 668889899999988876432111 0 012357778887654
No 171
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=28.18 E-value=1.1e+02 Score=27.91 Aligned_cols=54 Identities=11% Similarity=0.056 Sum_probs=43.7
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHhhC--CCEEEEEeCcccccccccCCCCCCCCeeEE
Q 022744 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHK--GLKVTLVTTYFISKSLHRDSSSPSTSISLE 70 (292)
Q Consensus 12 ~~~hvv~~p~p~~GH~~P~l~La~~La~r--G~~VT~itt~~~~~~~~~~~~~~~~~i~~~ 70 (292)
+..+|+++-.-+.|-+.-.+.+.+.|.++ +.+||+++.+.+.+-++ ..+.|+-+
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~-----~~P~id~v 59 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILS-----ENPEINAL 59 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhc-----cCCCceEE
Confidence 35679999999999999999999999996 79999999888766544 23566544
No 172
>PRK05920 aromatic acid decarboxylase; Validated
Probab=27.98 E-value=81 Score=26.88 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=30.7
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCccccc
Q 022744 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISK 54 (292)
Q Consensus 13 ~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~ 54 (292)
..+|++- ..|.....=..++.++|.+.|++|+++.|+....
T Consensus 3 ~krIllg-ITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~ 43 (204)
T PRK05920 3 MKRIVLA-ITGASGAIYGVRLLECLLAADYEVHLVISKAAQK 43 (204)
T ss_pred CCEEEEE-EeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHH
Confidence 3455544 4445555788999999999999999999987544
No 173
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.84 E-value=64 Score=30.54 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=27.2
Q ss_pred ceEEEEeCC---CccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 14 VHCLVLSYP---AQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 14 ~hvv~~p~p---~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
.-+-+=|.. -.||+.|++-| ++|...||+|+++....
T Consensus 35 ~Y~GfDPTa~slHlGhlv~l~kL-~~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 35 VYIGFDPTAPSLHLGHLVPLMKL-RRFQDAGHKPIVLIGDA 74 (401)
T ss_pred EEEeeCCCCCccchhhHHHHHHH-HHHHHCCCeEEEEeccc
Confidence 445555554 34999999877 57899999999987654
No 174
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=27.77 E-value=41 Score=26.71 Aligned_cols=19 Identities=37% Similarity=0.662 Sum_probs=16.3
Q ss_pred CCCccChHHHHHHHHHHhh
Q 022744 21 YPAQGHINPLLQFAKRLEH 39 (292)
Q Consensus 21 ~p~~GH~~P~l~La~~La~ 39 (292)
.|-.|-.||+|+|+-.|+=
T Consensus 56 ~pe~G~tNPFLHlsmHLsI 74 (137)
T PF08897_consen 56 SPEQGETNPFLHLSMHLSI 74 (137)
T ss_pred CcccCccchhHHHHHHHHH
Confidence 3678999999999999873
No 175
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.74 E-value=63 Score=25.05 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEE
Q 022744 29 PLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEA 71 (292)
Q Consensus 29 P~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~ 71 (292)
-+++.|++|+++|++|+.. +-+.... ..+++++.
T Consensus 24 ~~~~VA~~L~e~g~dv~at--DI~~~~a-------~~g~~~v~ 57 (129)
T COG1255 24 FFLDVAKRLAERGFDVLAT--DINEKTA-------PEGLRFVV 57 (129)
T ss_pred hHHHHHHHHHHcCCcEEEE--ecccccC-------cccceEEE
Confidence 4689999999999887654 3333221 24777775
No 176
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=27.55 E-value=52 Score=24.67 Aligned_cols=38 Identities=11% Similarity=0.249 Sum_probs=29.6
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEe
Q 022744 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVT 48 (292)
Q Consensus 11 ~~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~it 48 (292)
..+++++.++.....+...+.++++.+.+++-++.++.
T Consensus 49 ~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 49 AERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp HTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred cCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 34788899988888899999999999888765544443
No 177
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=27.52 E-value=6.4e+02 Score=25.39 Aligned_cols=42 Identities=10% Similarity=0.015 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcCCCCccEEEe-CCCC--ccHHHHHHHhCC--CcEEEec
Q 022744 101 SLCELVENMNGSGVPVDCIVY-DSFL--PWALDVAKKFGL--VGAAFLT 144 (292)
Q Consensus 101 ~l~~~l~~l~~~~~~~d~iI~-D~~~--~~~~~vA~~lgi--P~v~f~~ 144 (292)
.++++.+.+.+ .+||++|. |.-- ......+++.|+ |.+.+.+
T Consensus 298 ~~~~l~~~i~~--~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVs 344 (608)
T PRK01021 298 RYRKLYKTILK--TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVC 344 (608)
T ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC
Confidence 44555555543 34588666 7543 235677788896 8766544
No 178
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=27.44 E-value=68 Score=26.19 Aligned_cols=39 Identities=28% Similarity=0.297 Sum_probs=26.0
Q ss_pred cCCCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeC
Q 022744 10 SCKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTT 49 (292)
Q Consensus 10 ~~~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt 49 (292)
..+..+|+++.-++. -=-=-+.+||+|+++|++|+++..
T Consensus 22 ~~~~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 22 SPKGPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp CCTT-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEEE
Confidence 445678888887752 111246789999999999999543
No 179
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=27.34 E-value=99 Score=28.42 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=25.3
Q ss_pred CccE-EEeCCCCc-cHHHHHHHhCCCcEEEeccch
Q 022744 115 PVDC-IVYDSFLP-WALDVAKKFGLVGAAFLTQSC 147 (292)
Q Consensus 115 ~~d~-iI~D~~~~-~~~~vA~~lgiP~v~f~~~~a 147 (292)
.||+ ||.|.-.. .+..-|.++|||.|.+.-+.+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 3576 55587764 788999999999999876654
No 180
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=27.13 E-value=81 Score=26.23 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=22.0
Q ss_pred HHHHHHHHhhCCCEEEEEeCcccccc
Q 022744 30 LLQFAKRLEHKGLKVTLVTTYFISKS 55 (292)
Q Consensus 30 ~l~La~~La~rG~~VT~itt~~~~~~ 55 (292)
..+|.++|.++|++|.++.|+....-
T Consensus 15 a~~lir~L~~~g~~V~vv~T~~A~~f 40 (181)
T TIGR00421 15 GIRLLEVLKEAGVEVHLVISDWAKET 40 (181)
T ss_pred HHHHHHHHHHCCCEEEEEECccHHHH
Confidence 37899999999999999999875543
No 181
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=27.11 E-value=3.3e+02 Score=24.76 Aligned_cols=107 Identities=8% Similarity=0.004 Sum_probs=55.3
Q ss_pred EeCCCccChHHHHHHHHHHhhC-CCEEEEEeCcccccccccCCCCCCCCeeE-EEccCCCCCCCCCCccCHHHHHHHHHH
Q 022744 19 LSYPAQGHINPLLQFAKRLEHK-GLKVTLVTTYFISKSLHRDSSSPSTSISL-EAISDGYDEGGSAQTEGVEAYLERFWQ 96 (292)
Q Consensus 19 ~p~p~~GH~~P~l~La~~La~r-G~~VT~itt~~~~~~~~~~~~~~~~~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (292)
+-....-|+.=+..+.++|.++ ++++.++.|........... .. -+|.. +.+. +. + ............
T Consensus 5 ~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~-~~-~~i~~~~~~~--~~--~--~~~~~~~~~~~~-- 74 (365)
T TIGR00236 5 IVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVL-DL-FHLPPDYDLN--IM--S--PGQTLGEITSNM-- 74 (365)
T ss_pred EEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHH-Hh-cCCCCCeeee--cC--C--CCCCHHHHHHHH--
Confidence 4456777888889999999986 67777766653322111000 00 11211 1111 11 0 111221111111
Q ss_pred hCcHHHHHHHHHhhcCCCCccEEEe--CCCCc-cHHHHHHHhCCCcEEE
Q 022744 97 IGPRSLCELVENMNGSGVPVDCIVY--DSFLP-WALDVAKKFGLVGAAF 142 (292)
Q Consensus 97 ~~~~~l~~~l~~l~~~~~~~d~iI~--D~~~~-~~~~vA~~lgiP~v~f 142 (292)
...+.+.+++. +||+|++ |.... ++..+|.++|||.+.+
T Consensus 75 --~~~l~~~l~~~-----~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 75 --LEGLEELLLEE-----KPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred --HHHHHHHHHHc-----CCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 12345555543 3598887 55554 4677888999999865
No 182
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=26.87 E-value=3.5e+02 Score=24.68 Aligned_cols=55 Identities=18% Similarity=0.105 Sum_probs=37.3
Q ss_pred HHHhCcHHHHHHHHHhhcCCCCccEEEeCCCCc--cHHHHHHHhCCCcEEEeccchHH
Q 022744 94 FWQIGPRSLCELVENMNGSGVPVDCIVYDSFLP--WALDVAKKFGLVGAAFLTQSCVV 149 (292)
Q Consensus 94 ~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~~--~~~~vA~~lgiP~v~f~~~~a~~ 149 (292)
+.+...+..++.++++.+. .+|.+||++-+.. ....+|++.++|.+.....+...
T Consensus 63 l~~l~~~~r~~~~~~l~~~-~~P~iIvt~~~~~p~~l~~~a~~~~ipll~t~~~t~~~ 119 (308)
T PRK05428 63 LNQLSEEERKERLKKLFSL-EPPCIIVTRGLEPPPELLEAAKEAGIPLLRTPLSTTRL 119 (308)
T ss_pred HHhCCHHHHHHHHHHHhCC-CCCEEEEECcCCCCHHHHHHHHHcCCcEEEeCCcHHHH
Confidence 3333344556667777664 3457788887764 57899999999999866554333
No 183
>PRK04940 hypothetical protein; Provisional
Probab=26.48 E-value=1.3e+02 Score=25.05 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=25.2
Q ss_pred cEEEeCCCC-ccHHHHHHHhCCCcEEEeccchH
Q 022744 117 DCIVYDSFL-PWALDVAKKFGLVGAAFLTQSCV 148 (292)
Q Consensus 117 d~iI~D~~~-~~~~~vA~~lgiP~v~f~~~~a~ 148 (292)
.+||=-.+- .|+.-+|+++|+|.|.+.++--.
T Consensus 62 ~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P 94 (180)
T PRK04940 62 PLICGVGLGGYWAERIGFLCGIRQVIFNPNLFP 94 (180)
T ss_pred cEEEEeChHHHHHHHHHHHHCCCEEEECCCCCh
Confidence 466655554 49999999999999999887643
No 184
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=26.10 E-value=3.8e+02 Score=22.17 Aligned_cols=97 Identities=15% Similarity=0.223 Sum_probs=56.0
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEE---eCcccc---cccccCCCCCCCCeeEEEccCCCCCCCCCCccC
Q 022744 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLV---TTYFIS---KSLHRDSSSPSTSISLEAISDGYDEGGSAQTEG 86 (292)
Q Consensus 13 ~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~i---tt~~~~---~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 86 (292)
+--|.++.-.+.|=..-.+.+|.+.+.+|++|.++ -..... ..++ . .++++.....++.- .. .+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~-----~-~~~~~~~~g~g~~~-~~---~~ 74 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFE-----P-HGVEFQVMGTGFTW-ET---QN 74 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHH-----h-cCcEEEECCCCCee-cC---CC
Confidence 34577888899999999999999999999999654 332111 1111 1 26788877655432 11 11
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHhhcCCCCccEEEeCCCC
Q 022744 87 VEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFL 125 (292)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~iI~D~~~ 125 (292)
....... ..+.++...+.+. + ..+|+||.|=..
T Consensus 75 ~~~~~~~----~~~~~~~a~~~l~-~-~~~DlvVLDEi~ 107 (173)
T TIGR00708 75 READTAI----AKAAWQHAKEMLA-D-PELDLVLLDELT 107 (173)
T ss_pred cHHHHHH----HHHHHHHHHHHHh-c-CCCCEEEehhhH
Confidence 1111111 1122333333332 2 468999999764
No 185
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=24.59 E-value=69 Score=29.13 Aligned_cols=18 Identities=28% Similarity=0.685 Sum_probs=15.8
Q ss_pred HHHHHHHhhCCCEEEEEe
Q 022744 31 LQFAKRLEHKGLKVTLVT 48 (292)
Q Consensus 31 l~La~~La~rG~~VT~it 48 (292)
-..|++||+||++|.+|+
T Consensus 63 KayA~eLAkrG~nvvLIs 80 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLIS 80 (312)
T ss_pred HHHHHHHHHcCCEEEEEe
Confidence 478999999999988876
No 186
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=24.45 E-value=2.5e+02 Score=25.91 Aligned_cols=114 Identities=13% Similarity=0.094 Sum_probs=56.4
Q ss_pred EeCCCccChHHHHHHHHHHhh-CCCEEEEEeCccccc-ccccCCCC-CCCCeeEEEccCCCCCCCCC--CccCHHHHHHH
Q 022744 19 LSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFISK-SLHRDSSS-PSTSISLEAISDGYDEGGSA--QTEGVEAYLER 93 (292)
Q Consensus 19 ~p~p~~GH~~P~l~La~~La~-rG~~VT~itt~~~~~-~~~~~~~~-~~~~i~~~~l~~~~~~~~~~--~~~~~~~~~~~ 93 (292)
+-+...--++=|..+.++|.+ .++++.++.|.-..+ ........ ...++... ++ .+- ... ....+...+..
T Consensus 5 ~v~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~--~~-~~~-~~~~~~~~~~~~~~~~ 80 (365)
T TIGR03568 5 VVTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDID--EK-IEI-LLDSDSNAGMAKSMGL 80 (365)
T ss_pred EEEecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCC--Cc-ccc-ccCCCCCCCHHHHHHH
Confidence 344556666677888888887 478988877654322 11000000 00011111 10 000 010 11122222211
Q ss_pred HHHhCcHHHHHHHHHhhcCCCCccEEEe--CCCCc-cHHHHHHHhCCCcEEEecc
Q 022744 94 FWQIGPRSLCELVENMNGSGVPVDCIVY--DSFLP-WALDVAKKFGLVGAAFLTQ 145 (292)
Q Consensus 94 ~~~~~~~~l~~~l~~l~~~~~~~d~iI~--D~~~~-~~~~vA~~lgiP~v~f~~~ 145 (292)
. ...+.+++++. +||+||+ |.+.. .+..+|..+|||.+-+...
T Consensus 81 ~----~~~~~~~~~~~-----~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 81 T----IIGFSDAFERL-----KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred H----HHHHHHHHHHh-----CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 1 12345555543 3588777 66654 5678889999999965544
No 187
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=24.10 E-value=1.1e+02 Score=26.51 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=28.6
Q ss_pred EEeCCCccCh-HHHHHHHHHHhhC--CCEEEEEeCccccc
Q 022744 18 VLSYPAQGHI-NPLLQFAKRLEHK--GLKVTLVTTYFISK 54 (292)
Q Consensus 18 ~~p~p~~GH~-~P~l~La~~La~r--G~~VT~itt~~~~~ 54 (292)
++-..|.|+. .=..+|.++|.++ |++|.++.|+...+
T Consensus 3 ~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~ 42 (234)
T TIGR02700 3 GWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEE 42 (234)
T ss_pred EEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHh
Confidence 3444555666 5789999999999 99999999887543
No 188
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=24.09 E-value=1.1e+02 Score=25.41 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=26.4
Q ss_pred CCCccChHH-HHHHHHHHhh-CCCEEEEEeCcccc
Q 022744 21 YPAQGHINP-LLQFAKRLEH-KGLKVTLVTTYFIS 53 (292)
Q Consensus 21 ~p~~GH~~P-~l~La~~La~-rG~~VT~itt~~~~ 53 (292)
.-+.||... ..++.+.|++ +|++|.++.|+...
T Consensus 6 itGsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~ 40 (174)
T TIGR02699 6 ITGSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGE 40 (174)
T ss_pred EEccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHH
Confidence 344588877 8899999985 69999999988754
No 189
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=24.07 E-value=1.2e+02 Score=26.46 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=37.1
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCC--CEEEEEeCcccccccc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKG--LKVTLVTTYFISKSLH 57 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG--~~VT~itt~~~~~~~~ 57 (292)
+|+++-..+.|-+.-++.+.+.|.++. .+||+++...+...++
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~ 45 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLE 45 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHh
Confidence 478888999999999999999999965 8999999987665544
No 190
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=23.97 E-value=72 Score=27.09 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=16.1
Q ss_pred HHHHHHHHhhcCCCCccEEEeCCCC
Q 022744 101 SLCELVENMNGSGVPVDCIVYDSFL 125 (292)
Q Consensus 101 ~l~~~l~~l~~~~~~~d~iI~D~~~ 125 (292)
..+.+.+++. ++++||||+|+.-
T Consensus 124 ~~~ki~e~lp--~r~VdvVlSDMap 146 (232)
T KOG4589|consen 124 TYRKIFEALP--NRPVDVVLSDMAP 146 (232)
T ss_pred HHHHHHHhCC--CCcccEEEeccCC
Confidence 3445555553 3789999999875
No 191
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=23.90 E-value=1.2e+02 Score=26.53 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=30.6
Q ss_pred CCccChHHHHHHHHHHhhCCCEEEEEeCcccccc
Q 022744 22 PAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKS 55 (292)
Q Consensus 22 p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~ 55 (292)
.|.|=..-.+-||..|+++|-+|++|=+++|.+.
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 4779999999999999999999999999988753
No 192
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=23.83 E-value=69 Score=25.65 Aligned_cols=21 Identities=29% Similarity=0.172 Sum_probs=18.8
Q ss_pred HHHHHHHhhCCCEEEEEeCcc
Q 022744 31 LQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 31 l~La~~La~rG~~VT~itt~~ 51 (292)
..||..|+++||+|++.+.+.
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 478999999999999998875
No 193
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=23.61 E-value=80 Score=28.11 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=23.6
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeC
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTT 49 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt 49 (292)
.-++++-.+.| =-.++|+.||+||++|.++.=
T Consensus 7 ~~~lITGASsG---IG~~~A~~lA~~g~~liLvaR 38 (265)
T COG0300 7 KTALITGASSG---IGAELAKQLARRGYNLILVAR 38 (265)
T ss_pred cEEEEECCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 44556655554 247899999999999988763
No 194
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=23.58 E-value=81 Score=25.85 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=29.6
Q ss_pred cHHHHHHHHHhhcCCCCccEEEeCCCCccHHHHHHHhCCCcEEEeccc
Q 022744 99 PRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQS 146 (292)
Q Consensus 99 ~~~l~~~l~~l~~~~~~~d~iI~D~~~~~~~~vA~~lgiP~v~f~~~~ 146 (292)
.+.++..++++.++ .+|+||-+.. +...|+++|+|.+.+.++-
T Consensus 111 ~~e~~~~i~~~~~~--G~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 111 EEEIEAAIKQAKAE--GVDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp HHHHHHHHHHHHHT--T--EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred HHHHHHHHHHHHHc--CCcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 34566677766553 4899999874 6899999999998877743
No 195
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=23.18 E-value=1.4e+02 Score=24.80 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=22.2
Q ss_pred cEEEeCCCCcc--HHHHHHHhCCCcEEEeccch
Q 022744 117 DCIVYDSFLPW--ALDVAKKFGLVGAAFLTQSC 147 (292)
Q Consensus 117 d~iI~D~~~~~--~~~vA~~lgiP~v~f~~~~a 147 (292)
.-+|.|.|++. +..+|.++|-.+|.+-....
T Consensus 192 gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~ 224 (231)
T PF01555_consen 192 GDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEE 224 (231)
T ss_dssp T-EEEETT-TTTHHHHHHHHTT-EEEEEESSHH
T ss_pred ceeeehhhhccChHHHHHHHcCCeEEEEeCCHH
Confidence 67899999974 57888999999888766543
No 196
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=23.16 E-value=59 Score=24.67 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=25.5
Q ss_pred EEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 17 LVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 17 v~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
+..-+|++|+++=-.+|++++.+.| |+|+.+..
T Consensus 75 ~~~i~pGyg~lse~~~fa~~~~~~g--i~fiGp~~ 107 (110)
T PF00289_consen 75 ADAIHPGYGFLSENAEFAEACEDAG--IIFIGPSP 107 (110)
T ss_dssp ESEEESTSSTTTTHHHHHHHHHHTT---EESSS-H
T ss_pred CcccccccchhHHHHHHHHHHHHCC--CEEECcCh
Confidence 3445799999999999999999888 56776543
No 197
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=22.94 E-value=84 Score=24.56 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=18.7
Q ss_pred HHHHHHHhhCCCEEEEEeCccc
Q 022744 31 LQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 31 l~La~~La~rG~~VT~itt~~~ 52 (292)
.-+|.+|++.|++|++++....
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~ 32 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPR 32 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHH
T ss_pred HHHHHHHHHCCCceEEEEcccc
Confidence 3478999999999999998773
No 198
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=22.90 E-value=1.7e+02 Score=22.18 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=30.4
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 11 ~~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
++...++++.+...- ...++-++.|.+.|.+++++....
T Consensus 7 ~~g~di~iia~G~~~--~~al~A~~~L~~~Gi~~~vi~~~~ 45 (124)
T PF02780_consen 7 REGADITIIAYGSMV--EEALEAAEELEEEGIKAGVIDLRT 45 (124)
T ss_dssp ESSSSEEEEEETTHH--HHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eCCCCEEEEeehHHH--HHHHHHHHHHHHcCCceeEEeeEE
Confidence 345678888888774 556899999999999999876543
No 199
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=22.83 E-value=45 Score=23.23 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=14.0
Q ss_pred HHHHHHHhhCCCEEEEEeCcc
Q 022744 31 LQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 31 l~La~~La~rG~~VT~itt~~ 51 (292)
-+|+..|..+|+.||=.|-..
T Consensus 23 ~eL~~~L~~~Gi~vTQaTiSR 43 (70)
T PF01316_consen 23 EELVELLEEEGIEVTQATISR 43 (70)
T ss_dssp HHHHHHHHHTT-T--HHHHHH
T ss_pred HHHHHHHHHcCCCcchhHHHH
Confidence 579999999999988655443
No 200
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=22.82 E-value=82 Score=27.04 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=21.5
Q ss_pred CccChHHHHHHHHHHhhCCCEEEEEeCccc
Q 022744 23 AQGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 23 ~~GH~~P~l~La~~La~rG~~VT~itt~~~ 52 (292)
+.|++- -.||++|++.||+|++.+....
T Consensus 8 GtGniG--~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 8 GTGNIG--SALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred ccChHH--HHHHHHHHhCCCeEEEecCCCh
Confidence 444443 5789999999999999877654
No 201
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=22.20 E-value=85 Score=26.58 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=17.2
Q ss_pred HHHHHHHhhCCCEEEEEeCcc
Q 022744 31 LQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 31 l~La~~La~rG~~VT~itt~~ 51 (292)
-.+.++..+|||+||-++-..
T Consensus 14 s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 14 SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred HHHHHHHHhCCCeeEEEEeCh
Confidence 367899999999999877554
No 202
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=21.78 E-value=2e+02 Score=23.79 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=30.3
Q ss_pred CceEEEEeC--CCccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 13 RVHCLVLSY--PAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 13 ~~hvv~~p~--p~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
.++++.|.. ++.|=..-...||+.|+++|.+|.++=...
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 355555554 466788889999999999999999886554
No 203
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=21.72 E-value=1.3e+02 Score=26.09 Aligned_cols=43 Identities=26% Similarity=0.198 Sum_probs=37.1
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCccccccc
Q 022744 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (292)
Q Consensus 14 ~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~~~ 56 (292)
.-+++.=.|+.|..+-.++++...+++|..|-++++......+
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL 66 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHH
Confidence 3577888899999999999999999999999999998654433
No 204
>CHL00067 rps2 ribosomal protein S2
Probab=21.67 E-value=1.6e+02 Score=25.50 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=24.2
Q ss_pred CccE-EEeCCCCc-cHHHHHHHhCCCcEEEeccc
Q 022744 115 PVDC-IVYDSFLP-WALDVAKKFGLVGAAFLTQS 146 (292)
Q Consensus 115 ~~d~-iI~D~~~~-~~~~vA~~lgiP~v~f~~~~ 146 (292)
.||+ ||.|.-.. -+..-|.++|||.+++.-+.
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn 194 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILDTN 194 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCC
Confidence 3576 45577664 67888999999999987665
No 205
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=21.57 E-value=2.2e+02 Score=19.43 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=26.7
Q ss_pred EEEEeCCCccChHHHHHHHHHHhhCCCEEEEEe
Q 022744 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVT 48 (292)
Q Consensus 16 vv~~p~p~~GH~~P~l~La~~La~rG~~VT~it 48 (292)
+++...++.|=..-...|++.|+++|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 345555677888889999999999999998766
No 206
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=21.54 E-value=1.2e+02 Score=24.90 Aligned_cols=32 Identities=3% Similarity=0.097 Sum_probs=23.2
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
++++++ +-|.+. .|+.+|.++|.+|+.+..+.
T Consensus 108 ~~vLvS--gD~DF~---~Lv~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 108 AVALVT--RDADFL---PVINKAKENGKETIVIGAEP 139 (160)
T ss_pred EEEEEe--ccHhHH---HHHHHHHHCCCEEEEEeCCC
Confidence 455554 456654 56788889999999999764
No 207
>KOG3400 consensus RNA polymerase subunit 8 [Transcription]
Probab=21.52 E-value=59 Score=25.57 Aligned_cols=15 Identities=7% Similarity=0.007 Sum_probs=10.5
Q ss_pred cCCCCcEEEEEeCcc
Q 022744 276 DRANGLLFIYHLGVW 290 (292)
Q Consensus 276 ~q~~~SVvYVsFGS~ 290 (292)
.+.+..-+|||||-+
T Consensus 103 ~~~~~~~~YvSFGGL 117 (143)
T KOG3400|consen 103 GKTEKASAYVSFGGL 117 (143)
T ss_pred CccceeeEEEeeceE
Confidence 344556799999953
No 208
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=21.35 E-value=88 Score=22.71 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=23.9
Q ss_pred HHHHHHHHhhCCCEEEEEeCcccccccccCCCCCCCCeeEEEc
Q 022744 30 LLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAI 72 (292)
Q Consensus 30 ~l~La~~La~rG~~VT~itt~~~~~~~~~~~~~~~~~i~~~~l 72 (292)
++++|++|++.|++ ++.|....+.++. .+|....+
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~------~Gi~~~~v 36 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKE------HGIEVTEV 36 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHH------TT--EEEC
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHH------cCCCceee
Confidence 57899999999966 6778776665553 36665444
No 209
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=21.25 E-value=1.7e+02 Score=25.94 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=33.0
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCccc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~ 52 (292)
-++++..+|.|=..-...||..|+++|.+|.+++++.+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 45566777999999999999999999999999998753
No 210
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=21.23 E-value=92 Score=26.82 Aligned_cols=19 Identities=32% Similarity=0.256 Sum_probs=16.5
Q ss_pred HHHHHHHHhhCCCEEEEEe
Q 022744 30 LLQFAKRLEHKGLKVTLVT 48 (292)
Q Consensus 30 ~l~La~~La~rG~~VT~it 48 (292)
-..+|++|+++|++|+++.
T Consensus 28 G~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 28 GKIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHHCCCEEEEEc
Confidence 3678999999999999875
No 211
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=21.16 E-value=1.5e+02 Score=26.17 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=24.4
Q ss_pred CccE-EEeCCCCc-cHHHHHHHhCCCcEEEeccc
Q 022744 115 PVDC-IVYDSFLP-WALDVAKKFGLVGAAFLTQS 146 (292)
Q Consensus 115 ~~d~-iI~D~~~~-~~~~vA~~lgiP~v~f~~~~ 146 (292)
.||+ ||.|.--. .+..-|.++|||.|.+.-+.
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCC
Confidence 3576 55587664 67889999999999987665
No 212
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.03 E-value=2.1e+02 Score=19.77 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=25.9
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEe
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVT 48 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~it 48 (292)
++++++. ..++..-.+.++..|.+.|.+|.+-.
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~ 35 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDL 35 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEEC
Confidence 4566665 46778889999999999999988743
No 213
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=20.92 E-value=88 Score=29.33 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=21.5
Q ss_pred ccChHHHHHHHHHHhhCCCEEEEEeCcc
Q 022744 24 QGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 24 ~GH~~P~l~La~~La~rG~~VT~itt~~ 51 (292)
-||+.|++.| ++|.+.||++.++....
T Consensus 46 lGh~v~l~~l-~~lq~~G~~~~iligd~ 72 (377)
T TIGR00234 46 LGHLVPLLKL-RDFQQAGHEVIVLLGDA 72 (377)
T ss_pred HHHHHHHHHH-HHHHHCCCcEEEEEecc
Confidence 4999997665 68889999999876543
No 214
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=20.92 E-value=5.3e+02 Score=21.97 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=28.8
Q ss_pred EEeCCCccChHHHHHHHHHHhhCCCEEEEEeCccc
Q 022744 18 VLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (292)
Q Consensus 18 ~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~ 52 (292)
+.-....|-..-+++-+++...+|-+|.++++...
T Consensus 9 i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 9 IYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 34444669999999999999999999999887764
No 215
>PRK13604 luxD acyl transferase; Provisional
Probab=20.52 E-value=2.2e+02 Score=25.95 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=24.5
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhCCCEEEE
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTL 46 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~ 46 (292)
..+++.....++-.-+..+|+.|+++|+.|--
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLr 69 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIR 69 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEE
Confidence 45666555556666699999999999988654
No 216
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=20.36 E-value=1.4e+02 Score=27.31 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=28.2
Q ss_pred hhhhhcccCCCceEEEEeCC--CccChHHHHHHHHHHhhCCC
Q 022744 3 NIEKKAASCKRVHCLVLSYP--AQGHINPLLQFAKRLEHKGL 42 (292)
Q Consensus 3 ~~~~~~~~~~~~hvv~~p~p--~~GH~~P~l~La~~La~rG~ 42 (292)
.+++.....++.+++.++.+ ..|..+|+-+|++...++|.
T Consensus 121 ~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~ 162 (368)
T PRK13479 121 EVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGK 162 (368)
T ss_pred HHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCC
Confidence 34444333344567777777 57999999999988888874
No 217
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=20.36 E-value=1.4e+02 Score=25.59 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=34.4
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCc
Q 022744 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (292)
Q Consensus 11 ~~~~hvv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~ 50 (292)
..++++|.+++....|..-+.++.++|.+.|.++.++..-
T Consensus 137 ~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG 176 (213)
T cd02069 137 EHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGG 176 (213)
T ss_pred HcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 3478999999999999999999999999999888766543
No 218
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=20.22 E-value=1.3e+02 Score=27.10 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=37.0
Q ss_pred eEEEEeCCCccChHHHHHHHHHHhhC--CCEEEEEeCcccccccc
Q 022744 15 HCLVLSYPAQGHINPLLQFAKRLEHK--GLKVTLVTTYFISKSLH 57 (292)
Q Consensus 15 hvv~~p~p~~GH~~P~l~La~~La~r--G~~VT~itt~~~~~~~~ 57 (292)
+|+++-.-+.|-+.=.+.+.+.|.++ +.+||+++.+.+.+-++
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 45 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLE 45 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHh
Confidence 58899999999999999999999985 89999999877655444
No 219
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.16 E-value=1.8e+02 Score=27.85 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=27.7
Q ss_pred CCceEEEEeCCCc--cChHHHHHHHHHHhhCCCEEEEEeCc
Q 022744 12 KRVHCLVLSYPAQ--GHINPLLQFAKRLEHKGLKVTLVTTY 50 (292)
Q Consensus 12 ~~~hvv~~p~p~~--GH~~P~l~La~~La~rG~~VT~itt~ 50 (292)
..+||++++-|+- |-.+- .||+|+..|+.++++...
T Consensus 265 ~~P~V~Ilcgpgnnggdg~v---~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 265 QWPLVAILCGPGNNGGDGLV---CGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CCceEEEEeCCCCccchhHH---HHHHHHHcCceeEEEeec
Confidence 3578999999875 33322 999999999998887654
No 220
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.13 E-value=2.2e+02 Score=21.33 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=29.7
Q ss_pred EEeCCCccChHHHHHHHHHHhhCCCEEEEEeCccccc
Q 022744 18 VLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISK 54 (292)
Q Consensus 18 ~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~~ 54 (292)
++-+.-.|..--+++.++.+.++|..|..+|.....+
T Consensus 51 vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 51 VIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 4444666788889999999999999998888876543
No 221
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=20.13 E-value=2.4e+02 Score=21.09 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=23.2
Q ss_pred EEEeCCCccChHHHHHHHHHHhhCCCEEEEEe
Q 022744 17 LVLSYPAQGHINPLLQFAKRLEHKGLKVTLVT 48 (292)
Q Consensus 17 v~~p~p~~GH~~P~l~La~~La~rG~~VT~it 48 (292)
|++--...|.-.-+..+++.|+++|+.|..+.
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~ 33 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFD 33 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 33444444566778999999999998877763
No 222
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=20.09 E-value=2.1e+02 Score=22.85 Aligned_cols=38 Identities=26% Similarity=0.300 Sum_probs=33.0
Q ss_pred EEEEeCCCccChHHHHHHHHHHhhCCCEEEEEeCcccc
Q 022744 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (292)
Q Consensus 16 vv~~p~p~~GH~~P~l~La~~La~rG~~VT~itt~~~~ 53 (292)
+++.-.|+.|=......|+..|+++|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 46677889999999999999999999999999987643
No 223
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=20.08 E-value=90 Score=26.84 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.2
Q ss_pred HHHHHHHhhCCCEEEEEeCcc
Q 022744 31 LQFAKRLEHKGLKVTLVTTYF 51 (292)
Q Consensus 31 l~La~~La~rG~~VT~itt~~ 51 (292)
..+|+.|++.||+|+.+-...
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCH
Confidence 579999999999999887655
Done!