Query 022746
Match_columns 292
No_of_seqs 211 out of 1761
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 10:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 100.0 2.5E-28 8.7E-33 206.0 12.3 165 47-221 3-177 (178)
2 3krm_A Insulin-like growth fac 99.9 1.2E-27 4.2E-32 199.0 13.3 157 49-222 2-159 (163)
3 2jzx_A Poly(RC)-binding protei 99.9 2.1E-27 7.2E-32 197.0 9.6 158 47-219 2-159 (160)
4 2jvz_A KH type-splicing, FAR u 99.9 1.8E-26 6.2E-31 191.9 13.3 158 50-220 2-161 (164)
5 1j4w_A FUSE binding protein; s 99.9 3.7E-26 1.3E-30 192.1 11.8 160 49-217 2-174 (174)
6 3krm_A Insulin-like growth fac 99.9 1.4E-21 4.9E-26 162.2 9.8 120 143-289 3-122 (163)
7 1j4w_A FUSE binding protein; s 99.8 1.2E-21 4E-26 164.5 7.0 139 142-289 2-141 (174)
8 2jvz_A KH type-splicing, FAR u 99.8 3.3E-21 1.1E-25 160.0 8.8 127 143-289 2-128 (164)
9 2anr_A Neuro-oncological ventr 99.8 1.9E-21 6.6E-26 163.8 6.7 138 141-290 4-142 (178)
10 2jzx_A Poly(RC)-binding protei 99.8 1.2E-20 4.2E-25 156.1 6.6 123 142-289 4-126 (160)
11 2qnd_A FMR1 protein; KH domain 99.8 2E-19 6.9E-24 146.3 10.1 137 48-219 2-142 (144)
12 3n89_A Defective in GERM LINE 99.8 1.2E-19 4.2E-24 167.4 9.7 189 46-287 26-223 (376)
13 2e3u_A PH-DIM2P, hypothetical 99.7 2.4E-17 8.3E-22 142.5 11.2 150 49-221 33-193 (219)
14 1tua_A Hypothetical protein AP 99.6 1.4E-14 4.9E-19 122.3 11.5 146 52-220 6-161 (191)
15 2axy_A Poly(RC)-binding protei 99.6 1.7E-15 5.8E-20 108.9 4.8 71 47-124 2-72 (73)
16 2p2r_A Poly(RC)-binding protei 99.5 3.3E-15 1.1E-19 108.2 4.9 74 47-125 2-75 (76)
17 2axy_A Poly(RC)-binding protei 99.5 8.6E-15 2.9E-19 105.2 6.3 70 142-220 4-73 (73)
18 1zzk_A Heterogeneous nuclear r 99.5 1.2E-14 4.1E-19 106.8 7.1 73 48-125 5-77 (82)
19 1dtj_A RNA-binding neurooncolo 99.5 2.3E-14 7.8E-19 103.7 7.6 72 143-219 3-75 (76)
20 1wvn_A Poly(RC)-binding protei 99.5 9.2E-15 3.2E-19 107.4 5.4 74 47-125 3-76 (82)
21 2p2r_A Poly(RC)-binding protei 99.5 3E-14 1E-18 103.1 6.6 72 142-220 4-75 (76)
22 1zzk_A Heterogeneous nuclear r 99.5 6.9E-14 2.4E-18 102.7 8.2 72 142-220 6-77 (82)
23 2qnd_A FMR1 protein; KH domain 99.5 2E-14 7E-19 116.7 5.5 101 142-288 3-104 (144)
24 1wvn_A Poly(RC)-binding protei 99.5 5.3E-14 1.8E-18 103.3 6.9 73 141-220 4-76 (82)
25 1dtj_A RNA-binding neurooncolo 99.5 3.4E-14 1.2E-18 102.7 5.6 71 49-124 2-75 (76)
26 1j5k_A Heterogeneous nuclear r 99.5 2.1E-14 7.3E-19 107.1 4.4 74 47-125 11-84 (89)
27 1x4n_A FAR upstream element bi 99.5 7.1E-14 2.4E-18 104.9 7.2 74 48-126 13-86 (92)
28 2opv_A KHSRP protein; KH domai 99.5 1.9E-13 6.6E-18 101.0 9.0 73 142-219 13-85 (85)
29 1x4m_A FAR upstream element bi 99.5 1.8E-13 6.3E-18 103.0 8.6 77 45-126 10-88 (94)
30 1ec6_A RNA-binding protein NOV 99.5 7.4E-14 2.5E-18 103.7 6.2 73 143-220 3-76 (87)
31 2dgr_A Ring finger and KH doma 99.4 5.9E-14 2E-18 103.1 5.1 71 140-220 7-77 (83)
32 1x4n_A FAR upstream element bi 99.4 2.2E-13 7.7E-18 102.1 8.1 74 141-221 13-86 (92)
33 1x4m_A FAR upstream element bi 99.4 1.7E-13 5.9E-18 103.1 7.0 76 140-220 12-87 (94)
34 2dgr_A Ring finger and KH doma 99.4 1.7E-13 5.8E-18 100.7 6.0 72 46-125 6-77 (83)
35 1j5k_A Heterogeneous nuclear r 99.4 1.4E-13 4.9E-18 102.5 5.7 73 141-220 12-84 (89)
36 2opv_A KHSRP protein; KH domai 99.4 2.8E-13 9.5E-18 100.1 7.0 72 47-123 11-84 (85)
37 2hh2_A KH-type splicing regula 99.4 3.4E-13 1.2E-17 103.9 7.8 74 144-221 8-81 (107)
38 2hh3_A KH-type splicing regula 99.4 1.4E-13 5E-18 105.7 5.5 73 50-127 11-83 (106)
39 1ec6_A RNA-binding protein NOV 99.4 9.8E-14 3.4E-18 103.0 4.3 72 49-125 2-76 (87)
40 2e3u_A PH-DIM2P, hypothetical 99.4 1.4E-13 4.7E-18 119.0 5.2 116 142-288 33-165 (219)
41 2hh3_A KH-type splicing regula 99.4 4.5E-13 1.5E-17 103.0 7.3 72 142-220 10-81 (106)
42 1we8_A Tudor and KH domain con 99.4 6.4E-13 2.2E-17 101.9 7.8 76 141-221 13-88 (104)
43 1we8_A Tudor and KH domain con 99.4 5.7E-13 2E-17 102.2 7.1 74 47-125 12-87 (104)
44 2hh2_A KH-type splicing regula 99.4 4.5E-13 1.5E-17 103.3 5.9 71 51-126 8-81 (107)
45 1vig_A Vigilin; RNA-binding pr 99.4 6.9E-13 2.3E-17 94.6 5.6 67 48-121 3-69 (71)
46 2ctl_A Vigilin; K homology typ 99.4 2.3E-12 7.7E-17 97.5 8.4 73 142-220 16-88 (97)
47 2ctm_A Vigilin; K homology typ 99.3 1.9E-12 6.5E-17 97.6 7.8 73 140-220 14-86 (95)
48 1vig_A Vigilin; RNA-binding pr 99.3 1.1E-12 3.6E-17 93.6 5.8 67 142-217 4-70 (71)
49 2cte_A Vigilin; K homology typ 99.3 1.5E-12 5.2E-17 98.0 6.3 72 141-221 15-86 (94)
50 2ctl_A Vigilin; K homology typ 99.3 1.6E-12 5.4E-17 98.4 6.0 73 48-125 15-88 (97)
51 2cte_A Vigilin; K homology typ 99.3 1.6E-12 5.3E-17 97.9 4.8 72 47-125 14-85 (94)
52 3n89_A Defective in GERM LINE 99.3 6.8E-12 2.3E-16 115.9 9.7 152 49-218 105-260 (376)
53 1tua_A Hypothetical protein AP 99.3 2.7E-12 9.1E-17 108.4 5.7 115 144-288 5-134 (191)
54 2ctm_A Vigilin; K homology typ 99.2 5.8E-12 2E-16 94.9 5.4 75 46-126 13-87 (95)
55 2ctk_A Vigilin; K homology typ 99.2 1E-11 3.5E-16 95.1 6.4 70 142-220 16-85 (104)
56 2ctk_A Vigilin; K homology typ 99.2 1.3E-11 4.4E-16 94.5 4.2 70 49-125 16-85 (104)
57 2ctj_A Vigilin; K homology typ 99.1 7.7E-11 2.6E-15 88.6 6.3 71 141-220 15-86 (95)
58 2ctf_A Vigilin; K homology typ 99.1 1.1E-10 3.7E-15 89.0 7.1 66 143-220 27-93 (102)
59 2ctj_A Vigilin; K homology typ 99.1 4.7E-11 1.6E-15 89.8 4.5 76 44-126 11-87 (95)
60 2ctf_A Vigilin; K homology typ 99.1 4.3E-10 1.5E-14 85.7 8.6 67 49-125 26-93 (102)
61 2cpq_A FragIle X mental retard 98.8 4.2E-09 1.4E-13 78.0 5.2 65 141-217 13-79 (91)
62 2cpq_A FragIle X mental retard 98.8 5.7E-09 2E-13 77.3 5.1 65 45-118 10-75 (91)
63 1k1g_A SF1-BO isoform; splicin 98.7 1.9E-08 6.4E-13 79.9 6.8 73 48-124 5-99 (131)
64 2yqr_A KIAA0907 protein; struc 98.6 1E-07 3.6E-12 74.2 7.9 72 49-124 11-99 (119)
65 1k1g_A SF1-BO isoform; splicin 98.6 1.2E-07 4E-12 75.3 7.6 78 142-219 6-99 (131)
66 2yqr_A KIAA0907 protein; struc 98.5 3.8E-07 1.3E-11 71.0 7.7 79 142-220 11-100 (119)
67 2bl5_A MGC83862 protein, quaki 98.5 1.8E-07 6.2E-12 74.7 5.6 76 50-125 2-102 (140)
68 3u1k_A Polyribonucleotide nucl 98.1 2.3E-06 7.8E-11 84.3 6.1 93 108-217 536-629 (630)
69 2bl5_A MGC83862 protein, quaki 98.1 2.8E-06 9.4E-11 67.9 5.1 76 144-220 3-102 (140)
70 3v69_A Protein filia; RNA-bind 97.9 3.4E-05 1.2E-09 60.5 7.3 69 144-220 57-125 (140)
71 2cxc_A NUSA; transcription ter 97.7 1.9E-05 6.6E-10 63.3 3.1 104 50-179 36-139 (144)
72 3u1k_A Polyribonucleotide nucl 97.7 1.2E-05 4E-10 79.3 2.2 63 49-121 566-628 (630)
73 4aid_A Polyribonucleotide nucl 97.6 2.9E-05 9.9E-10 77.5 4.1 96 108-220 539-635 (726)
74 3v69_A Protein filia; RNA-bind 97.4 0.00023 8E-09 55.8 6.0 67 50-122 56-122 (140)
75 2cxc_A NUSA; transcription ter 97.3 0.00015 5.1E-09 58.1 3.4 103 143-287 36-138 (144)
76 4aid_A Polyribonucleotide nucl 97.0 0.00013 4.4E-09 72.8 0.4 64 50-123 570-633 (726)
77 2asb_A Transcription elongatio 96.3 0.003 1E-07 54.9 4.0 98 59-183 126-224 (251)
78 1k0r_A NUSA; two component arr 96.1 0.0041 1.4E-07 57.0 4.4 104 52-182 237-346 (366)
79 3cdi_A Polynucleotide phosphor 95.9 0.0027 9.2E-08 63.5 2.1 95 108-219 529-624 (723)
80 1hh2_P NUSA, N utilization sub 95.4 0.016 5.5E-07 52.8 5.3 95 59-180 245-340 (344)
81 2asb_A Transcription elongatio 94.9 0.013 4.5E-07 50.9 2.9 93 152-287 126-219 (251)
82 1k0r_A NUSA; two component arr 94.6 0.017 5.7E-07 53.0 3.0 102 144-288 236-343 (366)
83 1e3p_A Guanosine pentaphosphat 94.5 0.0024 8.3E-08 64.1 -3.2 92 108-217 568-660 (757)
84 3cdi_A Polynucleotide phosphor 94.0 0.0099 3.4E-07 59.5 0.0 63 49-121 559-621 (723)
85 1hh2_P NUSA, N utilization sub 93.3 0.057 1.9E-06 49.2 3.8 94 152-288 245-339 (344)
86 1e3p_A Guanosine pentaphosphat 92.9 0.009 3.1E-07 60.0 -2.3 46 52-103 600-645 (757)
87 2pt7_G HP1451, hypothetical pr 85.0 0.33 1.1E-05 38.9 1.6 30 51-80 34-63 (152)
88 1wh9_A 40S ribosomal protein S 78.7 0.56 1.9E-05 34.2 0.8 28 51-78 36-63 (92)
89 2pt7_G HP1451, hypothetical pr 68.8 1.7 5.7E-05 34.7 1.3 28 252-280 34-61 (152)
90 1wh9_A 40S ribosomal protein S 68.6 1.4 4.9E-05 32.0 0.8 28 252-280 36-63 (92)
91 2jva_A Peptidyl-tRNA hydrolase 68.4 11 0.00039 28.0 5.7 58 66-125 24-98 (108)
92 1j26_A Immature colon carcinom 57.8 12 0.00042 28.0 4.2 58 66-125 31-106 (112)
93 3gku_A Probable RNA-binding pr 56.5 2.3 7.8E-05 36.2 -0.0 34 51-84 93-126 (225)
94 3u5c_D RP13, YS3, 40S ribosoma 54.8 4.2 0.00014 34.8 1.3 29 51-79 45-73 (240)
95 3j20_C 30S ribosomal protein S 51.2 4.2 0.00014 34.2 0.7 27 52-78 42-68 (210)
96 2ba0_A Archeal exosome RNA bin 50.7 28 0.00096 29.3 5.9 59 145-216 138-196 (229)
97 2xzm_C KH domain containing pr 49.9 5.5 0.00019 34.2 1.3 29 51-79 48-76 (243)
98 3iz6_B 40S ribosomal protein S 49.5 4.3 0.00015 34.5 0.6 29 51-79 45-73 (227)
99 4dh9_Y YAEJ; ribosome, YAEJ, r 47.0 30 0.001 27.0 5.0 58 66-125 24-98 (140)
100 3u5c_D RP13, YS3, 40S ribosoma 42.7 8.8 0.0003 32.8 1.4 28 252-280 45-72 (240)
101 3r8n_C 30S ribosomal protein S 42.4 4.6 0.00016 33.8 -0.3 27 52-78 63-89 (206)
102 3bbn_C Ribosomal protein S3; s 42.0 7.2 0.00025 32.9 0.8 28 52-79 72-99 (218)
103 2vqe_C 30S ribosomal protein S 40.8 8.1 0.00028 33.1 0.9 27 52-78 64-90 (239)
104 2zkq_c 40S ribosomal protein S 40.1 5.2 0.00018 34.4 -0.4 30 50-79 44-73 (243)
105 3i1m_C 30S ribosomal protein S 39.5 5.4 0.00018 34.0 -0.4 27 52-78 64-90 (233)
106 3j20_C 30S ribosomal protein S 38.5 8.6 0.00029 32.2 0.7 27 253-280 42-68 (210)
107 3iev_A GTP-binding protein ERA 37.3 10 0.00035 33.2 1.1 38 49-86 239-285 (308)
108 2z0s_A Probable exosome comple 37.2 67 0.0023 27.0 6.2 59 145-216 150-209 (235)
109 2xzm_C KH domain containing pr 37.1 11 0.00039 32.2 1.3 28 252-280 48-75 (243)
110 3iz6_B 40S ribosomal protein S 35.7 9.2 0.00032 32.4 0.5 28 252-280 45-72 (227)
111 3iev_A GTP-binding protein ERA 33.6 15 0.0005 32.2 1.5 32 250-282 239-271 (308)
112 1wlp_A Cytochrome B-245 light 33.2 22 0.00074 19.2 1.5 12 5-16 6-17 (26)
113 3gku_A Probable RNA-binding pr 31.9 8.8 0.0003 32.5 -0.3 30 252-282 93-122 (225)
114 2ba0_A Archeal exosome RNA bin 30.5 34 0.0012 28.8 3.2 44 53-102 139-182 (229)
115 2z0s_A Probable exosome comple 29.4 78 0.0027 26.6 5.3 46 52-103 150-195 (235)
116 3r8n_C 30S ribosomal protein S 29.0 10 0.00035 31.7 -0.4 27 253-280 63-89 (206)
117 1wf3_A GTP-binding protein; GT 28.3 16 0.00055 31.9 0.8 32 250-282 229-261 (301)
118 3bbn_C Ribosomal protein S3; s 28.3 14 0.00048 31.1 0.4 27 253-280 72-98 (218)
119 2zkq_c 40S ribosomal protein S 28.1 12 0.00041 32.1 -0.1 28 252-280 45-72 (243)
120 2vqe_C 30S ribosomal protein S 27.3 17 0.00059 31.0 0.8 26 254-280 65-90 (239)
121 3i1m_C 30S ribosomal protein S 27.1 12 0.0004 32.0 -0.3 27 253-280 64-90 (233)
122 1wf3_A GTP-binding protein; GT 22.7 16 0.00053 32.0 -0.4 34 53-86 233-275 (301)
123 1go3_E DNA-directed RNA polyme 20.4 47 0.0016 26.7 2.1 27 50-79 7-34 (187)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.95 E-value=2.5e-28 Score=206.02 Aligned_cols=165 Identities=25% Similarity=0.383 Sum_probs=134.0
Q ss_pred CCCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccC---CCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHh
Q 022746 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA---IARHEERVIIISSKDNDNVVSDAENALQQIAALIL 123 (292)
Q Consensus 47 ~~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~---~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~ 123 (292)
..+++++|+||.+.+|.||||+|++|++|+++|||+|+|.+. .+++.+|+|+|+|.+ .++.+|..+|.+++.
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~-----~~v~~A~~~I~~~~~ 77 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTI-----EALNAVHGFIAEKIR 77 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECH-----HHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCH-----HHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999999853 367889999999984 478899999999987
Q ss_pred cCCCCCcchh--h-----cccCCCcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcE
Q 022746 124 KDDDSNSEAS--K-----VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV 196 (292)
Q Consensus 124 ~~~~~~~~~~--~-----~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~ 196 (292)
+......... . .........+.++.||.+++|+|||++|++|++|+++|||+|.+.+.+..+. +.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~-----~~~~~ 152 (178)
T 2anr_A 78 EMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN-----LQNRV 152 (178)
T ss_dssp CCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC---------CCEEE
T ss_pred ccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCC-----CCceE
Confidence 7543211000 0 0001123468999999999999999999999999999999999975443332 57899
Q ss_pred EEEEcCHHHHHHHHHHHHHHHhcCC
Q 022746 197 VQISGDVPAVLNALVEIGNQLRENP 221 (292)
Q Consensus 197 v~I~G~~~~v~~A~~~I~~~l~~~~ 221 (292)
|+|+|++++|.+|+.+|.++|.++|
T Consensus 153 v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 153 VTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred EEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999874
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=198.98 Aligned_cols=157 Identities=23% Similarity=0.357 Sum_probs=132.3
Q ss_pred CeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccC-CCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcCCC
Q 022746 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDD 127 (292)
Q Consensus 49 ~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~-~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~~~ 127 (292)
+-+++|+||.+.+|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|++ .++.+|..+|.+++.+...
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~-----e~v~~A~~~I~~~~~e~~~ 76 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPP-----EAQFKAQGRIYGKLKEENF 76 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECH-----HHHHHHHHHHHHHHHHTTS
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCH-----HHHHHHHHHHHHHHhcccc
Confidence 4579999999999999999999999999999999999975 578899999999975 4788999999999877632
Q ss_pred CCcchhhcccCCCcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHH
Q 022746 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207 (292)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~ 207 (292)
... ......+.++.||..++|+|||++|++|++|+++|||+|.+.. +..|.. ..++.|+|+|++++|.
T Consensus 77 ~~~-------~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~-~~~~~~----~~~~~v~I~G~~~~v~ 144 (163)
T 3krm_A 77 FGP-------KEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR-DQTPDE----NDQVIVKIIGHFYASQ 144 (163)
T ss_dssp SCS-------SCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCT-TCCCCT----TSEEEEEEEECHHHHH
T ss_pred ccc-------ccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECC-CCCCCC----CCceEEEEEeCHHHHH
Confidence 211 1123457799999999999999999999999999999999853 444541 3455899999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 022746 208 NALVEIGNQLRENPP 222 (292)
Q Consensus 208 ~A~~~I~~~l~~~~~ 222 (292)
+|+.+|.+++.+...
T Consensus 145 ~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 145 MAQRKIRDILAQVKQ 159 (163)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988643
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.94 E-value=2.1e-27 Score=196.98 Aligned_cols=158 Identities=27% Similarity=0.488 Sum_probs=131.4
Q ss_pred CCCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcCC
Q 022746 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126 (292)
Q Consensus 47 ~~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~~ 126 (292)
+.+++++|+||.+.+|.||||+|++|++|+++|||+|+|++. ++++|+|+|+|+. .++.+|..+|.+.+.+..
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~-----~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-----NAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEH-----HHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCH-----HHHHHHHHHHHHHHHhhc
Confidence 457899999999999999999999999999999999999975 5678999999984 478899999998886632
Q ss_pred CCCcchhhcccCCCcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHH
Q 022746 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206 (292)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v 206 (292)
...... .........+.++.||.+++|+|||++|++|++|+++|||+|.+.+ +..|. +.++.|+|+|++++|
T Consensus 75 ~~~~~~--~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~-~~~~~-----~~~~~v~I~G~~~~v 146 (160)
T 2jzx_A 75 SSSMTN--STAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLPN-----STERAITIAGIPQSI 146 (160)
T ss_dssp TSCCCS--SSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC-CCSTT-----CCEEEEEEEECHHHH
T ss_pred cccCCC--CccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC-CCCCC-----CCceEEEEEcCHHHH
Confidence 111000 0001123568999999999999999999999999999999999854 34454 678999999999999
Q ss_pred HHHHHHHHHHHhc
Q 022746 207 LNALVEIGNQLRE 219 (292)
Q Consensus 207 ~~A~~~I~~~l~~ 219 (292)
.+|+.+|.+++.+
T Consensus 147 ~~A~~~I~~~i~e 159 (160)
T 2jzx_A 147 IECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999876
No 4
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=191.88 Aligned_cols=158 Identities=19% Similarity=0.313 Sum_probs=128.6
Q ss_pred eEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCC--CCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcCCC
Q 022746 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI--ARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDD 127 (292)
Q Consensus 50 ~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~--~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~~~ 127 (292)
++++|+||.+.+|.||||+|++|++|+++|||+|++.+.. ++..+|+|+|+|.+ .++.+|+.+|.+++.+...
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~-----~~v~~A~~~I~~ii~e~~~ 76 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP-----YKVQQACEMVMDILRERDQ 76 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECH-----HHHHHHHHHHHHHTTCSSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCH-----HHHHHHHHHHHHHHHhccC
Confidence 5789999999999999999999999999999999997542 45678999999974 4789999999999876542
Q ss_pred CCcchhhcccCCCcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHH
Q 022746 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207 (292)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~ 207 (292)
...... ...+.....+.++.||..++|+|||++|++|++|+++|||+|.+.+.+ +. +.++.|+|+|+++++.
T Consensus 77 ~~~~~~-~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~--~~-----~~~~~v~I~G~~~~v~ 148 (164)
T 2jvz_A 77 GGFGDR-NEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--GT-----GPEKIAHIMGPPDRCE 148 (164)
T ss_dssp CCCSSC-SSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC--TT-----SSEEEEEEESCHHHHH
T ss_pred CCCCCc-cccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC--CC-----CCcEEEEEEcCHHHHH
Confidence 211000 001111234688999999999999999999999999999999996532 21 4689999999999999
Q ss_pred HHHHHHHHHHhcC
Q 022746 208 NALVEIGNQLREN 220 (292)
Q Consensus 208 ~A~~~I~~~l~~~ 220 (292)
.|+.+|.+++.+.
T Consensus 149 ~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 149 HAARIINDLLQSL 161 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998763
No 5
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.93 E-value=3.7e-26 Score=192.07 Aligned_cols=160 Identities=21% Similarity=0.331 Sum_probs=126.5
Q ss_pred CeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcCCCC
Q 022746 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDS 128 (292)
Q Consensus 49 ~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~~~~ 128 (292)
..+++|+||.+++|.||||+|++|++|+++|||+|+|.+..+++.+|+|+|+|++ .++.+|+.+|.+++.+....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~-----~~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPP-----DRAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECH-----HHHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCH-----HHHHHHHHHHHHHHHhcccC
Confidence 4679999999999999999999999999999999999876567889999999984 47889999999888765321
Q ss_pred Ccchh------------hcc-cCCCcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCc
Q 022746 129 NSEAS------------KVA-AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195 (292)
Q Consensus 129 ~~~~~------------~~~-~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r 195 (292)
..... ... .......+.++.||.+++|+|||++|++|++|+++|||+|.+.+.. .+ +. .+.++
T Consensus 77 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~-~~-~~--~~~~~ 152 (174)
T 1j4w_A 77 NPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP-PP-NA--DPNMK 152 (174)
T ss_dssp ---------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC-TT-TS--CTTEE
T ss_pred CCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC-CC-CC--CCCce
Confidence 10000 000 0001245889999999999999999999999999999999997532 12 11 25789
Q ss_pred EEEEEcCHHHHHHHHHHHHHHH
Q 022746 196 VVQISGDVPAVLNALVEIGNQL 217 (292)
Q Consensus 196 ~v~I~G~~~~v~~A~~~I~~~l 217 (292)
.|+|+|+++++.+|+.+|.++|
T Consensus 153 ~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 153 LFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEEEECCHHHHHHHHHHHHHHC
T ss_pred EEEEECCHHHHHHHHHHHHHhC
Confidence 9999999999999999998874
No 6
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=162.24 Aligned_cols=120 Identities=20% Similarity=0.222 Sum_probs=102.8
Q ss_pred cEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcCCC
Q 022746 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222 (292)
Q Consensus 143 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~ 222 (292)
.+++|+||.+++|.|||++|++|++|+++|||+|.+.+. ..|. +.+|.|+|+|+++++.+|+.+|.+++.+...
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~-~~~~-----~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~ 76 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP-ETPD-----SKVRMVIITGPPEAQFKAQGRIYGKLKEENF 76 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCC-SSTT-----CSEEEEEEEECHHHHHHHHHHHHHHHHHTTS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCC-CCCC-----CCceEEEEEcCHHHHHHHHHHHHHHHhcccc
Confidence 478999999999999999999999999999999999643 3343 6899999999999999999999999988621
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEeccCccceeeecCCCccHHHHHHhhCCCCcccc
Q 022746 223 RQVISISPAYNYSAIRPAQPFVEPTSGYSMFLMQNTRYFVTAIFAVLSSFNIFFLITTSSLGQPLLQ 289 (292)
Q Consensus 223 ~~~~~~~p~~n~~~~~~~~~~~~~~~~~~~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~S~~~~~~~~ 289 (292)
.. | ......+.+|.||..++|+|||| ||++|++|++.|||.+.+.+
T Consensus 77 ~~-----~---------------~~~~~~~~~i~vp~~~~g~iIGk-gG~~I~~i~~~tga~I~i~~ 122 (163)
T 3krm_A 77 FG-----P---------------KEEVKLETHIRVPASAAGRVIGK-GGKTVNELQNLTAAEVVVPR 122 (163)
T ss_dssp SC-----S---------------SCCCCEEEEEEEETTTHHHHHCG-GGHHHHHHHHHHCCEEECCT
T ss_pred cc-----c---------------ccCCceEEEEEcChhheeeEEcC-CChHHHHHHHHhCCeEEECC
Confidence 10 0 01234677999999999999999 99999999999999998765
No 7
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.84 E-value=1.2e-21 Score=164.55 Aligned_cols=139 Identities=20% Similarity=0.200 Sum_probs=100.9
Q ss_pred ccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcCC
Q 022746 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221 (292)
Q Consensus 142 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 221 (292)
..+.+|+||.+++|.|||++|++|++|+++|||+|+|.+.+ +. ..+|.|+|+|++++|.+|+.+|.+++.+..
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~--~~-----~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~ 74 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD--GT-----TPERIAQITGPPDRAQHAAEIITDLLRSVQ 74 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT--TS-----CSEEEEEEEECHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC--CC-----CCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 45789999999999999999999999999999999997532 22 568999999999999999999999998763
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCCceeEEEEEeccCccceeeecCCCccHHHHHHhhCCCCcccc
Q 022746 222 PRQVISISPAYNYSAIRPAQPFV-EPTSGYSMFLMQNTRYFVTAIFAVLSSFNIFFLITTSSLGQPLLQ 289 (292)
Q Consensus 222 ~~~~~~~~p~~n~~~~~~~~~~~-~~~~~~~~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~S~~~~~~~~ 289 (292)
........|...+.+ +....|. .+.....+++|.||.+++|+|||| +|.+|++|++.|||.+.+.+
T Consensus 75 ~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk-gG~~Ik~I~~~tga~I~i~~ 141 (174)
T 1j4w_A 75 AGNPGGPGPGGRGRG-RGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGK-GGETIKSISQQSGARIELQR 141 (174)
T ss_dssp ------------------------------CEEEEEEETTTHHHHHCG-GGHHHHHHHHHHCCEEEEEC
T ss_pred cCCCCCCCCCCCCCC-CCCCccccCCCCCcEEEEEEEChHHcCeeECC-CchHHHHHHHHHCCEEEECC
Confidence 211100001000000 0001111 122235788999999999999999 99999999999999998865
No 8
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.84 E-value=3.3e-21 Score=159.97 Aligned_cols=127 Identities=18% Similarity=0.214 Sum_probs=102.4
Q ss_pred cEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcCCC
Q 022746 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222 (292)
Q Consensus 143 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~ 222 (292)
++.+|+||.+++|+|||++|++|++|+++|||+|.+.+....+. ..+|.|+|+|++++|.+|+.+|.+++.+...
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~-----~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~ 76 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNT-----NVDKPLRIIGDPYKVQQACEMVMDILRERDQ 76 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSS-----SSCEEEEEEECHHHHHHHHHHHHHHTTCSSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCC-----CCceEEEEEcCHHHHHHHHHHHHHHHHhccC
Confidence 47899999999999999999999999999999999865332222 5689999999999999999999999988642
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEeccCccceeeecCCCccHHHHHHhhCCCCcccc
Q 022746 223 RQVISISPAYNYSAIRPAQPFVEPTSGYSMFLMQNTRYFVTAIFAVLSSFNIFFLITTSSLGQPLLQ 289 (292)
Q Consensus 223 ~~~~~~~p~~n~~~~~~~~~~~~~~~~~~~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~S~~~~~~~~ 289 (292)
.+. .+. ..|... ...+++|.||..++|+|||| +|.+|++|++.|||.+.+.+
T Consensus 77 ~~~---~~~---------~~~~~~--~~~~~~i~vp~~~~g~iIGk-~G~~I~~i~~~tg~~I~i~~ 128 (164)
T 2jvz_A 77 GGF---GDR---------NEYGSR--IGGGIDVPVPRHSVGVVIGR-SGEMIKKIQNDAGVRIQFKQ 128 (164)
T ss_dssp CCC---SSC---------SSCTTS--CSSSBCCEEETTTHHHHHCS-SSHHHHHHHHHTCCEEEECC
T ss_pred CCC---CCc---------cccCCC--CCceEEEEEChhhccccCCC-CcHhHHHHHHHHCCeEEEeC
Confidence 211 111 011110 12457889999999999999 99999999999999998865
No 9
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.84 E-value=1.9e-21 Score=163.76 Aligned_cols=138 Identities=21% Similarity=0.240 Sum_probs=106.6
Q ss_pred cccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCC-CCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhc
Q 022746 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (292)
Q Consensus 141 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~-~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 219 (292)
...+++|+||.+++|.||||+|++|++|+++|||+|++.+.. ..|. +.+|.|+|+|+++++.+|+.+|.+++.+
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~-----~~er~v~I~G~~~~v~~A~~~I~~~~~~ 78 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG-----TTERVCLIQGTIEALNAVHGFIAEKIRE 78 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTT-----SSEEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCC-----CCCceEEEEeCHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999996542 2343 6789999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEeccCccceeeecCCCccHHHHHHhhCCCCccccc
Q 022746 220 NPPRQVISISPAYNYSAIRPAQPFVEPTSGYSMFLMQNTRYFVTAIFAVLSSFNIFFLITTSSLGQPLLQL 290 (292)
Q Consensus 220 ~~~~~~~~~~p~~n~~~~~~~~~~~~~~~~~~~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~S~~~~~~~~~ 290 (292)
.+...... .+ .++ .++ ..........+.+|.||.+++|+|||| +|++|++|++.|||.+.+.+.
T Consensus 79 ~~~~~~~~-~~-~~~---~~~-~~~~~~~~~~~~~i~Vp~~~vg~iIGk-gG~~Ik~i~~~tga~I~i~~~ 142 (178)
T 2anr_A 79 MPQNVAKT-EP-VSI---LQP-QTTVNPDRANQVKIIVPNSTAGLIIGK-GGATVKAIMEQSGAWVQLSQK 142 (178)
T ss_dssp CCCC-----------------------CGGGGEEEEEEEHHHHHHHHCG-GGHHHHHHHHHSSCEEEECCC
T ss_pred cCCccccC-Cc-ccc---cCC-ccCCCCCCceEEEEEEchhheeeeECC-CcHHHHHHHHHHCCEEEEeCC
Confidence 75432110 00 000 000 001112335789999999999999999 999999999999999988764
No 10
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=156.13 Aligned_cols=123 Identities=21% Similarity=0.322 Sum_probs=102.1
Q ss_pred ccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcCC
Q 022746 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221 (292)
Q Consensus 142 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 221 (292)
+.+.+|+||.+++|.|||++|++|++|+++|||+|++... . ..+|.|+|+|+++++.+|+.+|.+++.+..
T Consensus 4 ~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-~--------~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-N--------CPERIITLAGPTNAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-T--------TTEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-C--------CCceEEEEEeCHHHHHHHHHHHHHHHHhhc
Confidence 5689999999999999999999999999999999999753 1 468999999999999999999999987752
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEeccCccceeeecCCCccHHHHHHhhCCCCcccc
Q 022746 222 PRQVISISPAYNYSAIRPAQPFVEPTSGYSMFLMQNTRYFVTAIFAVLSSFNIFFLITTSSLGQPLLQ 289 (292)
Q Consensus 222 ~~~~~~~~p~~n~~~~~~~~~~~~~~~~~~~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~S~~~~~~~~ 289 (292)
.... + + .........+.+|.||.+++|+|||| ||.+|++|++.|||.+.+.+
T Consensus 75 ~~~~----~--~---------~~~~~~~~~~~~i~vp~~~~g~iIGk-gG~~Ik~i~~~tga~I~i~~ 126 (160)
T 2jzx_A 75 SSSM----T--N---------STAASRPPVTLRLVVPASQCGSLIGK-GGCKIKEIRESTGAQVQVAG 126 (160)
T ss_dssp TSCC----C--S---------SSCCCCCSEEEEEEEEHHHHHHHHCG-GGHHHHHHHHHHSSEECCCC
T ss_pred cccC----C--C---------CccCCCCCEEEEEEEChhheeeEECC-CCHHHHHHHHHhCCeEEECC
Confidence 2110 0 0 00011224789999999999999999 99999999999999988764
No 11
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.80 E-value=2e-19 Score=146.35 Aligned_cols=137 Identities=20% Similarity=0.246 Sum_probs=101.1
Q ss_pred CCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEec-CCCCcchhHHHHHHHHHHHHHhcCC
Q 022746 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS-KDNDNVVSDAENALQQIAALILKDD 126 (292)
Q Consensus 48 ~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G-~~~~~~v~~v~~A~~~I~~~i~~~~ 126 (292)
..++.+|+||.+.+|++||++|++|++|++++|+.|..... .++. +.+.+ +++ .+.+|. .++.- .
T Consensus 2 ~~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~---~~~~-~i~~~~~p~-----~v~~~~----~~l~~-~ 67 (144)
T 2qnd_A 2 SRFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE---DTCT-FHIYGEDQD-----AVKKAR----SFLEF-A 67 (144)
T ss_dssp --CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET---TTTE-EEEEESSHH-----HHHHHH----HHHCE-E
T ss_pred CceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC---Cchh-eeeccCCHH-----HHHHHH----Hhhhc-c
Confidence 35789999999999999999999999999999944332222 2344 44544 332 343332 22211 0
Q ss_pred CCCcchhhcccCCCcccEEEEEeccCcceeeecCCChhHHHHHHhhCC-eEEEeCCCCCCcccCCCCCCc--EEEEEcCH
Q 022746 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA-TIVILAPNQLPLCASAHESDR--VVQISGDV 203 (292)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga-~I~i~~~~~~p~~~~~~~~~r--~v~I~G~~ 203 (292)
..++.||.+++|++|||+|++|+.+++.||+ +|+|.+.++... ..+++ .|+|+|++
T Consensus 68 -----------------e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~----~~~~~~~~vtI~G~~ 126 (144)
T 2qnd_A 68 -----------------EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV----PQEEGMVPFVFVGTK 126 (144)
T ss_dssp -----------------EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC----CCCTTEEEEEEEEEH
T ss_pred -----------------eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc----cccCCeeEEEEEeCH
Confidence 3789999999999999999999999999997 999986433110 02333 58999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 022746 204 PAVLNALVEIGNQLRE 219 (292)
Q Consensus 204 ~~v~~A~~~I~~~l~~ 219 (292)
++|..|..+|..+|.+
T Consensus 127 ~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 127 DSIANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
No 12
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.79 E-value=1.2e-19 Score=167.45 Aligned_cols=189 Identities=9% Similarity=0.047 Sum_probs=132.3
Q ss_pred CCCCeEEEEEeeCCccceeecCCC--chhhhhhhhcCcEEEEccCC-----CCCCceEEEEecCCCCcchhHHHHHHHHH
Q 022746 46 KAQDVLFRIIVPSRQIGKVIGKEG--HRIQKIREETKATIKIADAI-----ARHEERVIIISSKDNDNVVSDAENALQQI 118 (292)
Q Consensus 46 ~~~~~~~rilvp~~~vg~IIGk~G--~~Ik~I~~~tga~I~i~~~~-----~~~~ervv~I~G~~~~~~v~~v~~A~~~I 118 (292)
+.+.+++++.||..++++||||+| ++|++|+++|||+|+|++.. +......|+|+|.+ ++|++|..+|
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~-----enVE~AR~~I 100 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYF-----GDVDRARMLM 100 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEH-----HHHHHHHHHH
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCH-----HHHHHHHHHH
Confidence 466899999999999999999999 99999999999999999754 11244689999995 4788888887
Q ss_pred HHHHhcCCCCCcchhhcccCCCcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEE
Q 022746 119 AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198 (292)
Q Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~ 198 (292)
.+++ ..++.+.+|...++. ..-+..|.+ ++.++++|.+.+..... +.....|+
T Consensus 101 ~~l~-------------------Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~-----~~~sd~V~ 153 (376)
T 3n89_A 101 RRNC-------------------HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKN-----GIVTTYLR 153 (376)
T ss_dssp HHSC-------------------EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC----------CEEEEE
T ss_pred HhcC-------------------CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCccccc-----CCCCCEEE
Confidence 7642 124556666543222 111234544 56799999985432211 02357899
Q ss_pred EEcCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEeccCccceeeecCCC--ccHHH
Q 022746 199 ISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSGYSMFLMQNTRYFVTAIFAVLSS--FNIFF 276 (292)
Q Consensus 199 I~G~~~~v~~A~~~I~~~l~~~~~~~~~~~~p~~n~~~~~~~~~~~~~~~~~~~~~v~iP~~~vG~IIGk~gG--~~Ik~ 276 (292)
|+|...++..|.+.+..++......+. .....++.+|.|+..+|..|||| +| ..|+.
T Consensus 154 IrG~~~nv~~akeA~~~Ll~~l~~~e~--------------------~~~~~~s~~v~V~~~~H~~IIGk-~G~n~~Ikk 212 (376)
T 3n89_A 154 ITAREKNQHELIEAAKRLNEILFRESP--------------------APENNFTLHFTLSTYYVDQVLGS-SSTAQLMPV 212 (376)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHCC--C--------------------CCSSCEEEEEEEEGGGHHHHTCC-TTSCCHHHH
T ss_pred EEcChhhHHHHHHHHHHHHHHHHhhhc--------------------ccccceEEEEEeCHHHHHHhhcC-CCcchHHHH
Confidence 999997666555554444433211110 01124789999999999999999 88 55699
Q ss_pred HHHhhCCCCcc
Q 022746 277 LITTSSLGQPL 287 (292)
Q Consensus 277 I~~~S~~~~~~ 287 (292)
|++.+|+.+.+
T Consensus 213 Ir~eTGv~I~F 223 (376)
T 3n89_A 213 IERETTTIISY 223 (376)
T ss_dssp HHHHHTCEEEC
T ss_pred HHHhhCCEEEC
Confidence 99999998765
No 13
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.72 E-value=2.4e-17 Score=142.51 Aligned_cols=150 Identities=20% Similarity=0.235 Sum_probs=113.5
Q ss_pred CeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcCCCC
Q 022746 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDS 128 (292)
Q Consensus 49 ~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~~~~ 128 (292)
+-..++.||.+.+|.|||++|++|+.|+++|||+|++... ++.|+|.+.....+..++++|..+|..++......
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e 107 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPE 107 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHH
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCcc
Confidence 3456999999999999999999999999999999999842 46789998753323457899999999987432211
Q ss_pred CcchhhcccCCCcccEEEEEec-----------cCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEE
Q 022746 129 NSEASKVAAGHVAANTIRLLIA-----------GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVV 197 (292)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~i~IP-----------~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v 197 (292)
...... ........+.++ ...+|+|||++|++|+.|++.|||+|.|. ++.|
T Consensus 108 --~g~~ll--~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~--------------~~~v 169 (219)
T 2e3u_A 108 --RAFRLL--NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY--------------GKTV 169 (219)
T ss_dssp --HHGGGG--STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE--------------TTEE
T ss_pred --ccceec--cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC--------------CeEE
Confidence 000000 001111223333 23689999999999999999999999984 3579
Q ss_pred EEEcCHHHHHHHHHHHHHHHhcCC
Q 022746 198 QISGDVPAVLNALVEIGNQLRENP 221 (292)
Q Consensus 198 ~I~G~~~~v~~A~~~I~~~l~~~~ 221 (292)
+|.|+.++++.|..+|.+++...+
T Consensus 170 ~i~G~~~~i~~A~~~i~~li~g~~ 193 (219)
T 2e3u_A 170 AIIGNPIQIEIAKTAIEKLARGSP 193 (219)
T ss_dssp EEEECHHHHHHHHHHHHHHHTTCC
T ss_pred EEEeCHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999997763
No 14
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.57 E-value=1.4e-14 Score=122.31 Aligned_cols=146 Identities=18% Similarity=0.216 Sum_probs=111.8
Q ss_pred EEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcCCCCCcc
Q 022746 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131 (292)
Q Consensus 52 ~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~~~~~~~ 131 (292)
.+++||.+.+|.|||++|++++.|++.+||+|+++. .++.++|.......+..++++|...|..+....... +
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e--~ 78 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPE--K 78 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHH--H
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHH--H
Confidence 689999999999999999999999999999999974 357788884433333567899999998887654321 1
Q ss_pred hhhcccCCCcccEEEEEec----------cCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEc
Q 022746 132 ASKVAAGHVAANTIRLLIA----------GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201 (292)
Q Consensus 132 ~~~~~~~~~~~~~~~i~IP----------~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G 201 (292)
....-. .......+.++ ....|+|||++|.+++.|++.|||+|.|. +..|.|.|
T Consensus 79 A~~Ll~--Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~--------------~~~v~i~G 142 (191)
T 1tua_A 79 AFRLLE--EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG--------------EYEVAIIG 142 (191)
T ss_dssp HGGGGS--TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC--------------SSEEEEEE
T ss_pred hhhccc--CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc--------------CCEEEEEe
Confidence 111100 01112223333 24689999999999999999999999983 34899999
Q ss_pred CHHHHHHHHHHHHHHHhcC
Q 022746 202 DVPAVLNALVEIGNQLREN 220 (292)
Q Consensus 202 ~~~~v~~A~~~I~~~l~~~ 220 (292)
+.++++.|...|..++...
T Consensus 143 ~~~~i~~Ar~~i~~li~g~ 161 (191)
T 1tua_A 143 DYERAMAAKQAIEMLAEGR 161 (191)
T ss_dssp EHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHcCC
Confidence 9999999999999999754
No 15
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.57 E-value=1.7e-15 Score=108.86 Aligned_cols=71 Identities=25% Similarity=0.502 Sum_probs=64.6
Q ss_pred CCCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhc
Q 022746 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (292)
Q Consensus 47 ~~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~ 124 (292)
+..++++|+||.+.+|.||||+|++|++|+++|||+|++++. ++++|+|+|+|++ .++.+|+.+|.+++.+
T Consensus 2 ~~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~-----~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-----NAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECH-----HHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCH-----HHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999999976 5789999999985 4789999999999865
No 16
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.55 E-value=3.3e-15 Score=108.18 Aligned_cols=74 Identities=27% Similarity=0.448 Sum_probs=66.4
Q ss_pred CCCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcC
Q 022746 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (292)
Q Consensus 47 ~~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~ 125 (292)
...++++|+||.+.+|.||||+|++|++|+++|||+|++.+..++..+|.|+|+|++ .++.+|..+|.+++.++
T Consensus 2 ~~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~-----~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 2 AQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSA-----ASISLAQYLINVRLSSE 75 (76)
T ss_dssp -CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECH-----HHHHHHHHHHHHHHTTC
T ss_pred CCceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCH-----HHHHHHHHHHHHHHHcc
Confidence 357889999999999999999999999999999999999987777889999999985 47899999999988653
No 17
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.54 E-value=8.6e-15 Score=105.16 Aligned_cols=70 Identities=34% Similarity=0.615 Sum_probs=63.5
Q ss_pred ccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022746 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (292)
Q Consensus 142 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 220 (292)
....+|+||.+.+|.|||++|++|++|+++|||+|++.+. . ..+|.|+|+|+++++.+|+.+|.++|.++
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-~--------~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-N--------CPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-C--------CSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-C--------CCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 5689999999999999999999999999999999999653 1 46899999999999999999999999863
No 18
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.53 E-value=1.2e-14 Score=106.77 Aligned_cols=73 Identities=29% Similarity=0.505 Sum_probs=66.0
Q ss_pred CCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcC
Q 022746 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (292)
Q Consensus 48 ~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~ 125 (292)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|++..++..+|.|+|+|++ +++.+|..+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~-----~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ-----DQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECH-----HHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCH-----HHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999987677889999999985 47899999999988653
No 19
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.52 E-value=2.3e-14 Score=103.66 Aligned_cols=72 Identities=22% Similarity=0.376 Sum_probs=63.3
Q ss_pred cEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCC-CCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhc
Q 022746 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (292)
Q Consensus 143 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~-~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 219 (292)
.+.++.||.+++|+|||++|++|++|+++|||+|.+.+.++ .|. +.++.|+|+|+++++.+|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~-----~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG-----TRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTT-----CCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCC-----CceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999975422 232 6789999999999999999999998865
No 20
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.52 E-value=9.2e-15 Score=107.39 Aligned_cols=74 Identities=26% Similarity=0.424 Sum_probs=65.6
Q ss_pred CCCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcC
Q 022746 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (292)
Q Consensus 47 ~~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~ 125 (292)
...++++|+||.+.+|.||||+|++|++|+++|||+|+|.+..++..+|.|+|+|++ .++.+|..+|.+++.+.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~-----~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSA-----ASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECH-----HHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCH-----HHHHHHHHHHHHHHHhh
Confidence 346889999999999999999999999999999999999987677889999999986 47899999999988664
No 21
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.50 E-value=3e-14 Score=103.13 Aligned_cols=72 Identities=32% Similarity=0.499 Sum_probs=64.7
Q ss_pred ccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022746 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (292)
Q Consensus 142 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 220 (292)
..+.++.||.+++|+|||++|++|++|+++|||+|++.+. .+. +.++.|+|+|+++++.+|+.+|.+++.+.
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~-----~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP--VEG-----STDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC--CTT-----CSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC--CCC-----CCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 4688999999999999999999999999999999999642 232 67999999999999999999999999764
No 22
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.49 E-value=6.9e-14 Score=102.69 Aligned_cols=72 Identities=33% Similarity=0.507 Sum_probs=64.6
Q ss_pred ccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022746 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (292)
Q Consensus 142 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 220 (292)
..+.++.||.+++|.|||++|++|++|+++|||+|++.+. .|. +.+|.|+|+|+++++.+|+.+|.+++.+.
T Consensus 6 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~-----~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 6 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LEG-----SEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT--TSC-----SSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC--CCC-----CCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 5688999999999999999999999999999999999642 232 57899999999999999999999999875
No 23
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.49 E-value=2e-14 Score=116.68 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=78.8
Q ss_pred ccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcCC
Q 022746 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221 (292)
Q Consensus 142 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 221 (292)
..+.+|.||.+.+|.+||++|++|+.|++++| |++...++ ..+..+...++++.|.+|..++ .-
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~--------~~~~~i~~~~~p~~v~~~~~~l----~~-- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDE--------DTCTFHIYGEDQDAVKKARSFL----EF-- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEET--------TTTEEEEEESSHHHHHHHHHHH----CE--
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCC--------CchheeeccCCHHHHHHHHHhh----hc--
Confidence 45789999999999999999999999999999 44432211 2344555556799998886543 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEeccCccceeeecCCCccHHHHHHhhCC-CCccc
Q 022746 222 PRQVISISPAYNYSAIRPAQPFVEPTSGYSMFLMQNTRYFVTAIFAVLSSFNIFFLITTSSL-GQPLL 288 (292)
Q Consensus 222 ~~~~~~~~p~~n~~~~~~~~~~~~~~~~~~~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~S~~-~~~~~ 288 (292)
...+|.||.+++|++||| +|+||+.|++.||+ .+.+-
T Consensus 67 -----------------------------~e~~v~Vp~~~~g~~IGK-~G~nIr~i~~~tG~~~I~i~ 104 (144)
T 2qnd_A 67 -----------------------------AEDVIQVPRNLVGKVIGK-NGKLIQEIVDKSGVVRVRIE 104 (144)
T ss_dssp -----------------------------EEEEEEEEGGGHHHHHCG-GGHHHHHHHHHHTCSEEEEE
T ss_pred -----------------------------ceEEEEECHHHcCeeECC-CCHHHHHHHHHHCCEEEEEc
Confidence 136889999999999999 99999999999997 66543
No 24
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.48 E-value=5.3e-14 Score=103.31 Aligned_cols=73 Identities=34% Similarity=0.504 Sum_probs=64.0
Q ss_pred cccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022746 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (292)
Q Consensus 141 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 220 (292)
...+.+|.||.+++|.|||++|++|++|+++|||+|++.+. .+. +.++.|+|+|+++++.+|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~--~~~-----~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP--VEG-----SSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC--CTT-----CSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC--CCC-----CCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 35689999999999999999999999999999999999642 222 67999999999999999999999999876
No 25
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.48 E-value=3.4e-14 Score=102.73 Aligned_cols=71 Identities=23% Similarity=0.380 Sum_probs=62.1
Q ss_pred CeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccC---CCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhc
Q 022746 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA---IARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (292)
Q Consensus 49 ~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~---~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~ 124 (292)
..+++|+||.+.+|.||||+|++|++|+++|||+|+|.+. .+++.++.|+|+|++ .++..|..+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~-----~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSP-----AATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESH-----HHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCH-----HHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999964 356778999999985 4788999999888654
No 26
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.47 E-value=2.1e-14 Score=107.07 Aligned_cols=74 Identities=28% Similarity=0.500 Sum_probs=66.8
Q ss_pred CCCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcC
Q 022746 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (292)
Q Consensus 47 ~~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~ 125 (292)
...++++|+||.+.+|.||||+|++|++|+++|||+|+|++..++.++|.|+|+|++ +++.+|..+|.+++.+.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~-----e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ-----DQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEH-----HHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCH-----HHHHHHHHHHHHHHHhh
Confidence 447889999999999999999999999999999999999987777889999999985 47899999999988764
No 27
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.47 E-value=7.1e-14 Score=104.86 Aligned_cols=74 Identities=22% Similarity=0.366 Sum_probs=66.9
Q ss_pred CCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcCC
Q 022746 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126 (292)
Q Consensus 48 ~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~~ 126 (292)
..++++|+||.+++|.||||+|++|++|+++|||+|+|.+..++..+|.|+|+|++ .++.+|..+|.+++.+..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~-----e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTP-----ESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECH-----HHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCH-----HHHHHHHHHHHHHHHhcc
Confidence 46889999999999999999999999999999999999987667789999999985 478999999999987754
No 28
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.47 E-value=1.9e-13 Score=100.98 Aligned_cols=73 Identities=25% Similarity=0.440 Sum_probs=63.5
Q ss_pred ccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhc
Q 022746 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (292)
Q Consensus 142 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 219 (292)
....++.||.+++|+|||++|++||+|+++|||+|.+......+. +.+|.|+|+|+++++.+|+.+|.+++.+
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~-----~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNT-----NVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSST-----TSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCC-----CCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999965322122 5789999999999999999999998864
No 29
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.46 E-value=1.8e-13 Score=103.01 Aligned_cols=77 Identities=18% Similarity=0.348 Sum_probs=67.2
Q ss_pred CCCCCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCC--CCCceEEEEecCCCCcchhHHHHHHHHHHHHH
Q 022746 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA--RHEERVIIISSKDNDNVVSDAENALQQIAALI 122 (292)
Q Consensus 45 ~~~~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~--~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i 122 (292)
.....++++|+||.+++|+||||+|++|++|+++|||+|+|.+..+ ...+|.|+|+|+++ ++.+|..+|.+++
T Consensus 10 ~~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~-----~v~~A~~~I~~~i 84 (94)
T 1x4m_A 10 DGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY-----KVQQAKEMVLELI 84 (94)
T ss_dssp CCCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTT-----THHHHHHHHHHHH
T ss_pred CCCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHH-----HHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999997532 45789999999765 6899999999998
Q ss_pred hcCC
Q 022746 123 LKDD 126 (292)
Q Consensus 123 ~~~~ 126 (292)
.+..
T Consensus 85 ~~~~ 88 (94)
T 1x4m_A 85 RDQG 88 (94)
T ss_dssp CCCS
T ss_pred hccC
Confidence 7654
No 30
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.46 E-value=7.4e-14 Score=103.67 Aligned_cols=73 Identities=22% Similarity=0.375 Sum_probs=64.8
Q ss_pred cEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCC-CCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022746 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (292)
Q Consensus 143 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~-~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 220 (292)
.+.+|.||.+++|+|||++|++|++|+++|||+|.+.+.++ .|. +.++.|+|+|+++++..|+.+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g-----~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG-----TRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTT-----SCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCC-----CCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999999999999999999975422 333 57899999999999999999999998774
No 31
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=5.9e-14 Score=103.11 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=63.6
Q ss_pred CcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhc
Q 022746 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (292)
Q Consensus 140 ~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 219 (292)
....+.+|.||.+++|+||||+|++||+|+++|||+|++... .+++.|+|+|+++++.+|+.+|.+++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~----------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR----------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS----------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC----------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999999999999998642 2468999999999999999999998876
Q ss_pred C
Q 022746 220 N 220 (292)
Q Consensus 220 ~ 220 (292)
.
T Consensus 77 r 77 (83)
T 2dgr_A 77 R 77 (83)
T ss_dssp C
T ss_pred c
Confidence 5
No 32
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.44 E-value=2.2e-13 Score=102.13 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=66.1
Q ss_pred cccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022746 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (292)
Q Consensus 141 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 220 (292)
...+.+|.||.+++|+|||++|++|++|+++|||+|+|.+.. +. ..++.|+|+|+++++.+|+.+|.+++.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~--~g-----~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS--GG-----LPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC--TT-----CSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC--CC-----CCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 456899999999999999999999999999999999996532 22 56899999999999999999999999887
Q ss_pred C
Q 022746 221 P 221 (292)
Q Consensus 221 ~ 221 (292)
.
T Consensus 86 ~ 86 (92)
T 1x4n_A 86 R 86 (92)
T ss_dssp T
T ss_pred c
Confidence 3
No 33
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.44 E-value=1.7e-13 Score=103.15 Aligned_cols=76 Identities=24% Similarity=0.415 Sum_probs=66.4
Q ss_pred CcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhc
Q 022746 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (292)
Q Consensus 140 ~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 219 (292)
+...+.+|.||.+++|+||||+|++||+|+++|||+|.|........ ..+|.|+|+|+++++.+|+.+|.+++.+
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~-----~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT-----GADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSS-----CSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCC-----CCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999999964322111 4689999999999999999999999987
Q ss_pred C
Q 022746 220 N 220 (292)
Q Consensus 220 ~ 220 (292)
.
T Consensus 87 ~ 87 (94)
T 1x4m_A 87 Q 87 (94)
T ss_dssp C
T ss_pred c
Confidence 6
No 34
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=100.67 Aligned_cols=72 Identities=24% Similarity=0.400 Sum_probs=62.8
Q ss_pred CCCCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcC
Q 022746 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (292)
Q Consensus 46 ~~~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~ 125 (292)
....++++|.||.+++|+||||+|++||+|+++|||+|+|+.. .++++++|+|.++ ++.+|..+|.+++...
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~---~~~~~v~ItG~~e-----~v~~A~~~I~~~i~~r 77 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR---DKEPVFAVTGMPE-----NVDRAREEIEAHITLR 77 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS---SSCCEEEEEECTT-----THHHHHHHHHHHHHSC
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC---CCCCeEEEEcCHH-----HHHHHHHHHHHHHhcc
Confidence 4467899999999999999999999999999999999999853 2468999999986 5889999999876543
No 35
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.42 E-value=1.4e-13 Score=102.54 Aligned_cols=73 Identities=33% Similarity=0.501 Sum_probs=65.3
Q ss_pred cccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022746 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (292)
Q Consensus 141 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 220 (292)
...+.++.||.+++|.|||++|++|++|+++|||+|++.+. .|. +.++.|+|+|+++++.+|+.+|.+++.+.
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~--~~~-----~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LEG-----SEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC--CSS-----SSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC--CCC-----CCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 45688999999999999999999999999999999999632 232 57899999999999999999999999875
No 36
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.42 E-value=2.8e-13 Score=100.12 Aligned_cols=72 Identities=17% Similarity=0.338 Sum_probs=62.5
Q ss_pred CCCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCC--CCCCceEEEEecCCCCcchhHHHHHHHHHHHHHh
Q 022746 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI--ARHEERVIIISSKDNDNVVSDAENALQQIAALIL 123 (292)
Q Consensus 47 ~~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~--~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~ 123 (292)
....+.+|.||.+.+|.||||+|++|++|+++|||+|++.+.. +...+|.|+|+|++ .++.+|..+|.+++.
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~-----~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP-----YKVQQACEMVMDILR 84 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECH-----HHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCH-----HHHHHHHHHHHHHhc
Confidence 3467889999999999999999999999999999999999753 35678999999964 478899999988875
No 37
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=3.4e-13 Score=103.92 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=64.4
Q ss_pred EEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcCC
Q 022746 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221 (292)
Q Consensus 144 ~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 221 (292)
+.+|.||.+++|+||||+|++||+|+++|||+|+|.... .+.. ...++.|+|+|++++|.+|+.+|.+++.+..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~~~---~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PPNG---DPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CTTC---CTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CCCC---CCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999996532 2211 1468999999999999999999999998873
No 38
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=105.74 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=63.9
Q ss_pred eEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcCCC
Q 022746 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDD 127 (292)
Q Consensus 50 ~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~~~ 127 (292)
.+++|+||.+++|.||||+|++|++|+++|+|+|+|.+..+..++|+|+|+|++ +++.+|..+|.+++.+...
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~-----e~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPP-----DRCEHAARIINDLLQSLRS 83 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSH-----HHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCH-----HHHHHHHHHHHHHHhcccc
Confidence 368999999999999999999999999999999999976566789999999985 4789999999999877543
No 39
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.41 E-value=9.8e-14 Score=103.01 Aligned_cols=72 Identities=24% Similarity=0.394 Sum_probs=63.6
Q ss_pred CeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccC---CCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcC
Q 022746 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA---IARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (292)
Q Consensus 49 ~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~---~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~ 125 (292)
.++++|+||.+.+|.||||+|++|++|+++|||+|+|.+. .+++.++.|+|+|++ .++..|..+|.+++.+.
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~-----~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSP-----AATQAAQYLISQRVTYE 76 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSH-----HHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCH-----HHHHHHHHHHHHHHhcc
Confidence 3578999999999999999999999999999999999964 366788999999985 47899999999988653
No 40
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.41 E-value=1.4e-13 Score=118.99 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=88.1
Q ss_pred ccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcC-----HHHHHHHHHHHHHH
Q 022746 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD-----VPAVLNALVEIGNQ 216 (292)
Q Consensus 142 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~-----~~~v~~A~~~I~~~ 216 (292)
.....+.||.+.+|.|||++|++|+.|+++|||+|++. ..++.|+|.|+ ++++.+|..+|..+
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~------------~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i 100 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITID------------SETGEVWITSTKETEDPLAVWKARDIVLAI 100 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEEC------------TTTCEEEEEECTTCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEE------------cCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 44679999999999999999999999999999999984 24578889886 69999999999998
Q ss_pred HhcCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEecc-----------CccceeeecCCCccHHHHHHhhCCC
Q 022746 217 LRENPPR-QVISISPAYNYSAIRPAQPFVEPTSGYSMFLMQNTR-----------YFVTAIFAVLSSFNIFFLITTSSLG 284 (292)
Q Consensus 217 l~~~~~~-~~~~~~p~~n~~~~~~~~~~~~~~~~~~~~~v~iP~-----------~~vG~IIGk~gG~~Ik~I~~~S~~~ 284 (292)
+...... ...- . .++.....+.++. .++|+|||| +|.||+.|++.|||.
T Consensus 101 ~rg~~~e~g~~l----------------l--~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk-~G~tik~ie~~Tg~~ 161 (219)
T 2e3u_A 101 GRGFSPERAFRL----------------L--NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGR-KGRTRQIIEEMSGAS 161 (219)
T ss_dssp HTTCCHHHHGGG----------------G--STTCEEEEEEGGGCC------CHHHHHHHHHCG-GGHHHHHHHHHHCCE
T ss_pred hccCCcccccee----------------c--cCCccceeEEcccccccCCchhhhhhhheeECC-CchHHHHHHHHhCce
Confidence 8532100 0000 0 0111222344432 368999999 999999999999999
Q ss_pred Cccc
Q 022746 285 QPLL 288 (292)
Q Consensus 285 ~~~~ 288 (292)
+.+-
T Consensus 162 I~v~ 165 (219)
T 2e3u_A 162 VSVY 165 (219)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 8774
No 41
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=4.5e-13 Score=102.96 Aligned_cols=72 Identities=22% Similarity=0.339 Sum_probs=63.5
Q ss_pred ccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022746 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (292)
Q Consensus 142 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 220 (292)
..+.+|.||.+++++||||+|++||+|+++|||+|+|.+.+ +. +.+|.|+|+|+++++++|+.+|.+++.+.
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--~~-----~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--GT-----GPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--SS-----SSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC--CC-----CceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 34789999999999999999999999999999999996432 11 56899999999999999999999999876
No 42
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.39 E-value=6.4e-13 Score=101.90 Aligned_cols=76 Identities=24% Similarity=0.271 Sum_probs=65.6
Q ss_pred cccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022746 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (292)
Q Consensus 141 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 220 (292)
...+.+|.||.+++|+|||++|++|++|+++|||+|.|.+..... .+.++.|+|+|+.+++.+|+.+|.+++.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-----~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT-----LLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS-----SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC-----CCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 456899999999999999999999999999999999996532211 136899999999999999999999999876
Q ss_pred C
Q 022746 221 P 221 (292)
Q Consensus 221 ~ 221 (292)
+
T Consensus 88 ~ 88 (104)
T 1we8_A 88 E 88 (104)
T ss_dssp H
T ss_pred h
Confidence 4
No 43
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.39 E-value=5.7e-13 Score=102.17 Aligned_cols=74 Identities=26% Similarity=0.398 Sum_probs=63.9
Q ss_pred CCCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCC--CCceEEEEecCCCCcchhHHHHHHHHHHHHHhc
Q 022746 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR--HEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (292)
Q Consensus 47 ~~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~--~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~ 124 (292)
....+++|+||.+.+|.||||+|++|++|+++|||+|+|.+...+ .+++.|+|+|.++ ++.+|+.+|.+++.+
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~-----~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK-----EVAAAKHLILEKVSE 86 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHH-----HHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHH-----HHHHHHHHHHHHHhh
Confidence 346889999999999999999999999999999999999975432 3589999999864 688999999998865
Q ss_pred C
Q 022746 125 D 125 (292)
Q Consensus 125 ~ 125 (292)
.
T Consensus 87 ~ 87 (104)
T 1we8_A 87 D 87 (104)
T ss_dssp H
T ss_pred C
Confidence 3
No 44
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=4.5e-13 Score=103.25 Aligned_cols=71 Identities=23% Similarity=0.358 Sum_probs=62.0
Q ss_pred EEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCC---CCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcCC
Q 022746 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI---ARHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126 (292)
Q Consensus 51 ~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~---~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~~ 126 (292)
+++|+||.+++|.||||+|++|++|+++|||+|+|.+.. .+..++.|+|+|+. +++.+|+.+|.+++.+..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~-----e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSP-----QQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCH-----HHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCH-----HHHHHHHHHHHHHHhccc
Confidence 689999999999999999999999999999999999653 23468999999974 478999999999987643
No 45
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.36 E-value=6.9e-13 Score=94.62 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=58.2
Q ss_pred CCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHH
Q 022746 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAAL 121 (292)
Q Consensus 48 ~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~ 121 (292)
...+..|.||.+++|.|||++|++|++|+++|||+|+|++. +..++.|+|+|.++ ++.+|..+|.++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~--g~~~~~V~I~G~~~-----~v~~A~~~I~~i 69 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD--SEKSNLIRIEGDPQ-----GVQQAKRELLEL 69 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC--CSSSEEEEEEESSH-----HHHHHHHHHHHT
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC--CCcccEEEEEcCHH-----HHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999975 34678999999853 688888887765
No 46
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.35 E-value=2.3e-12 Score=97.53 Aligned_cols=73 Identities=15% Similarity=0.090 Sum_probs=63.5
Q ss_pred ccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022746 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (292)
Q Consensus 142 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 220 (292)
..+..|.||..+++.|||++|++|++|+++|||+|+|.+. ..+. ..++.|+|+|+.+++.+|+.+|..++.+.
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~-g~~~-----~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDK-DDGN-----QPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCT-TTCS-----SCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCC-CCCC-----CCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999998643 2222 36789999999999999999999988653
No 47
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.35 E-value=1.9e-12 Score=97.55 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=64.1
Q ss_pred CcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhc
Q 022746 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (292)
Q Consensus 140 ~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 219 (292)
...++..+.||.++++.|||++|++|++|+++|||+|+|++... ..++.|+|+|+++++.+|+.+|..++.+
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~--------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA--------PDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC--------SCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC--------CCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999854211 2468999999999999999999999877
Q ss_pred C
Q 022746 220 N 220 (292)
Q Consensus 220 ~ 220 (292)
.
T Consensus 86 ~ 86 (95)
T 2ctm_A 86 Y 86 (95)
T ss_dssp H
T ss_pred H
Confidence 5
No 48
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.34 E-value=1.1e-12 Score=93.62 Aligned_cols=67 Identities=24% Similarity=0.338 Sum_probs=59.3
Q ss_pred ccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHH
Q 022746 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217 (292)
Q Consensus 142 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l 217 (292)
..+..+.||.+++|.|||++|++|++|+++|||+|.+++. . ..++.|+|+|+.+++.+|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~-g--------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD-S--------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC-C--------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC-C--------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999998542 1 35689999999999999999998764
No 49
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.33 E-value=1.5e-12 Score=97.95 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=63.9
Q ss_pred cccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022746 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (292)
Q Consensus 141 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 220 (292)
...+..+.||.+++|.|||++|++|++|+++|||+|+|.+.+ ..++.|+|+|+++++.+|+.+|..++.+.
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~---------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD---------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT---------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC---------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 456899999999999999999999999999999999985422 23579999999999999999999999876
Q ss_pred C
Q 022746 221 P 221 (292)
Q Consensus 221 ~ 221 (292)
.
T Consensus 86 ~ 86 (94)
T 2cte_A 86 D 86 (94)
T ss_dssp H
T ss_pred c
Confidence 4
No 50
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.32 E-value=1.6e-12 Score=98.39 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=62.2
Q ss_pred CCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCC-CCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcC
Q 022746 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI-ARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (292)
Q Consensus 48 ~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~-~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~ 125 (292)
..+++.|.||.+++|.||||+|++|++|+++|||+|+|++.. ++..++.|+|+|.. .++.+|..+|..++.+.
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~-----e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYE-----KNTEAARDAILRIVGEL 88 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCH-----HHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCH-----HHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999653 33467899999984 36788888888887654
No 51
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=1.6e-12 Score=97.89 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=62.4
Q ss_pred CCCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcC
Q 022746 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (292)
Q Consensus 47 ~~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~ 125 (292)
...++.+|.||.+.+|.|||++|++|++|+++|||+|+|++. +..++.|+|+|.+ .++.+|..+|.+++.+.
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~--~~~~~~V~I~G~~-----e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP--DDPSNQIKITGTK-----EGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCT--TSSCCEEEEEECH-----HHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCC--CCCCCeEEEEECH-----HHHHHHHHHHHHHhhcc
Confidence 457899999999999999999999999999999999999864 2345789999984 47889999999888654
No 52
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.29 E-value=6.8e-12 Score=115.87 Aligned_cols=152 Identities=11% Similarity=0.140 Sum_probs=103.5
Q ss_pred CeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCC--CCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcCC
Q 022746 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA--RHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126 (292)
Q Consensus 49 ~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~--~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~~ 126 (292)
.+++.+.+|...++. ..-+..|.+ ++.++++|.+..... +.....|+|+|...+ +..+.+|+.++.+.+.+..
T Consensus 105 Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~n--v~~akeA~~~Ll~~l~~~e 179 (376)
T 3n89_A 105 HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAREKN--QHELIEAAKRLNEILFRES 179 (376)
T ss_dssp EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEGGG--HHHHHHHHHHHHHHHCC--
T ss_pred CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcChhh--HHHHHHHHHHHHHHHHhhh
Confidence 456677777654433 112334555 678999999964311 113567999998764 4566777777777765542
Q ss_pred CCCcchhhcccCCCcccEEEEEeccCcceeeecCCC--hhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHH
Q 022746 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG--QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204 (292)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~i~IP~~~vg~IIGk~G--~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~ 204 (292)
... ....+..+.|+..+|..|||++| ..|++|+++|||+|.++..++... . ......|+|+|+.+
T Consensus 180 ~~~----------~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d-~--~~~~~~ItItGs~e 246 (376)
T 3n89_A 180 PAP----------ENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNE-T--RGNIYEIKVVGNID 246 (376)
T ss_dssp CCC----------SSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC------------CCEEEEEEESCHH
T ss_pred ccc----------ccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCccc-c--cCCceEEEEEeCHH
Confidence 111 12468899999999999999999 567999999999999854322111 0 02457899999999
Q ss_pred HHHHHHHHHHHHHh
Q 022746 205 AVLNALVEIGNQLR 218 (292)
Q Consensus 205 ~v~~A~~~I~~~l~ 218 (292)
+|.+|+..|.++|-
T Consensus 247 ~V~~Ark~I~~lLP 260 (376)
T 3n89_A 247 NVLKARRYIMDLLP 260 (376)
T ss_dssp HHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999999983
No 53
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.28 E-value=2.7e-12 Score=108.41 Aligned_cols=115 Identities=10% Similarity=0.109 Sum_probs=90.6
Q ss_pred EEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEE-----cCHHHHHHHHHHHHHHHh
Q 022746 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS-----GDVPAVLNALVEIGNQLR 218 (292)
Q Consensus 144 ~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~-----G~~~~v~~A~~~I~~~l~ 218 (292)
..++.||...+|.|||++|++++.|++.+|++|++. ..++.|+|. |++.++.+|..+|..+..
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id------------~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD------------TENSMVIVEPEAEGIPPVNLMKAAEVVKAISL 72 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE------------TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE------------cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 368999999999999999999999999999999995 346788888 999999999999998887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEecc----------CccceeeecCCCccHHHHHHhhCCCCccc
Q 022746 219 ENPPRQVISISPAYNYSAIRPAQPFVEPTSGYSMFLMQNTR----------YFVTAIFAVLSSFNIFFLITTSSLGQPLL 288 (292)
Q Consensus 219 ~~~~~~~~~~~p~~n~~~~~~~~~~~~~~~~~~~~~v~iP~----------~~vG~IIGk~gG~~Ik~I~~~S~~~~~~~ 288 (292)
.....+...+ . .++.....|.++. ...|+|||| +|.||+.|+..|||.+.+-
T Consensus 73 gf~~e~A~~L---------------l--~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk-~G~tik~iE~~Tg~~I~v~ 134 (191)
T 1tua_A 73 GFPPEKAFRL---------------L--EEDQILVVVDLKQVVGDSQNHLKRIKGRIIGE-GGRARRTIEEMTDTYINVG 134 (191)
T ss_dssp TCCHHHHGGG---------------G--STTEEEEEEETHHHHTTCHHHHHHHHHHHHCG-GGHHHHHHHHHHTCEEEEC
T ss_pred CCCHHHhhhc---------------c--cCcceeEEEEcccccccCchhHHHHhhheeCC-CccHHHHHHHHHCceEEEc
Confidence 6532111000 0 0123344455552 358999999 9999999999999998764
No 54
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=5.8e-12 Score=94.88 Aligned_cols=75 Identities=23% Similarity=0.283 Sum_probs=63.1
Q ss_pred CCCCeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcC
Q 022746 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (292)
Q Consensus 46 ~~~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~ 125 (292)
....+++.|.||.+++|.|||++|++|++|+++|||+|+|++... ..++.|+|+|.++ ++.+|..+|..++.+.
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~-~~~~~V~I~G~~e-----~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA-PDPNCVTVTGLPE-----NVEEAIDHILNLEEEY 86 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC-SCTTEEEEESCHH-----HHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC-CCCcEEEEEcCHH-----HHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999999999999986521 2467899999853 6888888888887664
Q ss_pred C
Q 022746 126 D 126 (292)
Q Consensus 126 ~ 126 (292)
.
T Consensus 87 ~ 87 (95)
T 2ctm_A 87 L 87 (95)
T ss_dssp H
T ss_pred H
Confidence 3
No 55
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.24 E-value=1e-11 Score=95.05 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=61.9
Q ss_pred ccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022746 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (292)
Q Consensus 142 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 220 (292)
+....|.||.+++|.|||++|++|++|+++|||+|.|.+.. ...+.|+|+|+.+++.+|+.+|..++.+.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g---------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE---------LQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT---------TTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC---------CCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 46889999999999999999999999999999999986421 23469999999999999999999988664
No 56
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.18 E-value=1.3e-11 Score=94.55 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=60.6
Q ss_pred CeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcC
Q 022746 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (292)
Q Consensus 49 ~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~ 125 (292)
..+..|.||.+++|.|||++|++|++|+++|||+|+|++.. ...+.|+|+|.+ .++.+|..+|..++.+.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g--~~~~~V~I~G~~-----e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE--LQSDIIAITGLA-----ANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT--TTCCEEEEEECH-----HHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC--CCcceEEEEcCH-----HHHHHHHHHHHHHHhhH
Confidence 57889999999999999999999999999999999999753 244689999985 36888988888887654
No 57
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.12 E-value=7.7e-11 Score=88.63 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=63.2
Q ss_pred cccEEEEEeccCcceeeecCCChhHHHHHHhh-CCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhc
Q 022746 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS-GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (292)
Q Consensus 141 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 219 (292)
...+..|.||.++++.|||++|++|++|+++| ||+|.|+. +. +..+.|+|+|+..++.+|+.+|..++.+
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~-~g--------~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPV-EG--------SGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCC-TT--------TTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCC-CC--------CCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 45688999999999999999999999999999 99999853 21 4567999999999999999999999987
Q ss_pred C
Q 022746 220 N 220 (292)
Q Consensus 220 ~ 220 (292)
.
T Consensus 86 ~ 86 (95)
T 2ctj_A 86 K 86 (95)
T ss_dssp H
T ss_pred h
Confidence 5
No 58
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.12 E-value=1.1e-10 Score=89.01 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=59.5
Q ss_pred cEEEEEeccCcceeeecCCChhHHHHHHh-hCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022746 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNS-SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (292)
Q Consensus 143 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~-tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 220 (292)
.+.+|.||.++|+.|||++|++|++|+++ ++++|.|+. .++.|+|+|+++.|.+|..+|..++.+.
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~------------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE------------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS------------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC------------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999997 599999742 3569999999999999999999998765
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.11 E-value=4.7e-11 Score=89.79 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=65.2
Q ss_pred cCCCCCeEEEEEeeCCccceeecCCCchhhhhhhhc-CcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHH
Q 022746 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET-KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI 122 (292)
Q Consensus 44 ~~~~~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i 122 (292)
+..++.++..|.||.++++.|||++|++|++|+++| ||+|+|++. +...+.|+|+|..+ .+.+|..+|..++
T Consensus 11 ~e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~--g~~~~~V~I~G~~~-----~v~~A~~~I~~iv 83 (95)
T 2ctj_A 11 KDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE--GSGSDTVVIRGPSS-----DVEKAKKQLLHLA 83 (95)
T ss_dssp CCCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT--TTTCCEEEEESCHH-----HHHHHHHHHHHHH
T ss_pred HHHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC--CCCcceEEEEcCHH-----HHHHHHHHHHHHH
Confidence 456678889999999999999999999999999999 999999975 34567899999853 6888999999988
Q ss_pred hcCC
Q 022746 123 LKDD 126 (292)
Q Consensus 123 ~~~~ 126 (292)
.+..
T Consensus 84 ~e~e 87 (95)
T 2ctj_A 84 EEKQ 87 (95)
T ss_dssp HHHS
T ss_pred hhhh
Confidence 7644
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.07 E-value=4.3e-10 Score=85.66 Aligned_cols=67 Identities=24% Similarity=0.346 Sum_probs=58.1
Q ss_pred CeEEEEEeeCCccceeecCCCchhhhhhhh-cCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcC
Q 022746 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREE-TKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (292)
Q Consensus 49 ~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~-tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~ 125 (292)
.++.+|.||++++++|||++|++|++|+++ ++++|+|++ .++.|+|+|+++ .|.+|..+|..++.+.
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~~-----~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPTE-----DVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECHH-----HHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCHH-----HHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999997 599999997 357899999964 6888888888877653
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.81 E-value=4.2e-09 Score=77.99 Aligned_cols=65 Identities=28% Similarity=0.276 Sum_probs=56.6
Q ss_pred cccEEEEEeccCcceeeecCCChhHHHHHHhhCCe-EEEeCCCCCCcccCCCCCCcEEEEEc-CHHHHHHHHHHHHHHH
Q 022746 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGAT-IVILAPNQLPLCASAHESDRVVQISG-DVPAVLNALVEIGNQL 217 (292)
Q Consensus 141 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~-I~i~~~~~~p~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~l 217 (292)
......|.||.+.+|.+||++|++|++|+++||++ |.+. .++..|+|.| +.+++.+|+.+|..+-
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~------------eddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELD------------EDTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEE------------TTTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEE------------cCCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 45688999999999999999999999999999998 9994 2358999999 7899999998885543
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.78 E-value=5.7e-09 Score=77.28 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=52.6
Q ss_pred CCCCCeEEEEEeeCCccceeecCCCchhhhhhhhcCcE-EEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHH
Q 022746 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKAT-IKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118 (292)
Q Consensus 45 ~~~~~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~-I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I 118 (292)
.....+...|.||.+.+|.+||++|++|++|+++||++ |.+.+ ++..|+|.|... .++.+|..+|
T Consensus 10 ~~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----ddG~V~I~g~~~----ea~~~A~~~I 75 (91)
T 2cpq_A 10 QLAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----DTGTFRIYGESA----DAVKKARGFL 75 (91)
T ss_dssp SSSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----TTTEEEEEESSH----HHHHHHHHHH
T ss_pred hccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----CCCEEEEEECCH----HHHHHHHHHH
Confidence 44557889999999999999999999999999999998 99975 247899999643 3455555433
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.73 E-value=1.9e-08 Score=79.91 Aligned_cols=73 Identities=21% Similarity=0.398 Sum_probs=60.1
Q ss_pred CCeEEEEEeeCC------ccceeecCCCchhhhhhhhcCcEEEEccCCC----------------CCCceEEEEecCCCC
Q 022746 48 QDVLFRIIVPSR------QIGKVIGKEGHRIQKIREETKATIKIADAIA----------------RHEERVIIISSKDND 105 (292)
Q Consensus 48 ~~~~~rilvp~~------~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~----------------~~~ervv~I~G~~~~ 105 (292)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..... ..++-.|.|++...
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~- 83 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM- 83 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH-
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH-
Confidence 468899999998 7889999999999999999999999975210 12355788999653
Q ss_pred cchhHHHHHHHHHHHHHhc
Q 022746 106 NVVSDAENALQQIAALILK 124 (292)
Q Consensus 106 ~~v~~v~~A~~~I~~~i~~ 124 (292)
..+.+|+.+|..++..
T Consensus 84 ---e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 84 ---ENVKKAVEQIRNILKQ 99 (131)
T ss_dssp ---HHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHhc
Confidence 5789999999999876
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=1e-07 Score=74.20 Aligned_cols=72 Identities=22% Similarity=0.128 Sum_probs=56.8
Q ss_pred CeEEEEEeeCC-------ccceeecCCCchhhhhhhhcCcEEEEccCCC----------CCCceEEEEecCCCCcchhHH
Q 022746 49 DVLFRIIVPSR-------QIGKVIGKEGHRIQKIREETKATIKIADAIA----------RHEERVIIISSKDNDNVVSDA 111 (292)
Q Consensus 49 ~~~~rilvp~~-------~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~----------~~~ervv~I~G~~~~~~v~~v 111 (292)
.+..||.||.+ ++|.|||++|.+||+|+++|||+|.|..... ..++-.|.|++... .++
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~----e~i 86 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP----EGL 86 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSH----HHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCH----HHH
Confidence 46778998876 6899999999999999999999999973311 11345788888653 578
Q ss_pred HHHHHHHHHHHhc
Q 022746 112 ENALQQIAALILK 124 (292)
Q Consensus 112 ~~A~~~I~~~i~~ 124 (292)
.+|+.+|.+++..
T Consensus 87 ~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 87 AAAKKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 8999998888765
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.59 E-value=1.2e-07 Score=75.29 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=60.4
Q ss_pred ccEEEEEeccC------cceeeecCCChhHHHHHHhhCCeEEEeCCCCCCccc---------CCCCCCcEEEEEc-CHHH
Q 022746 142 ANTIRLLIAGS------QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCA---------SAHESDRVVQISG-DVPA 205 (292)
Q Consensus 142 ~~~~~i~IP~~------~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~---------~~~~~~r~v~I~G-~~~~ 205 (292)
..+.++.||.+ ++|.|||++|.+||+|+++|||+|.|.......... .....+-.|.|++ +.+.
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 45789999987 889999999999999999999999996432111000 0012467888998 5789
Q ss_pred HHHHHHHHHHHHhc
Q 022746 206 VLNALVEIGNQLRE 219 (292)
Q Consensus 206 v~~A~~~I~~~l~~ 219 (292)
+.+|+.+|..+|.+
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999977
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=3.8e-07 Score=71.01 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=57.1
Q ss_pred ccEEEEEeccC-------cceeeecCCChhHHHHHHhhCCeEEEeCCCCC---CcccCCCCCCcEEEEEc-CHHHHHHHH
Q 022746 142 ANTIRLLIAGS-------QAGCLIGMSGQNIEKLRNSSGATIVILAPNQL---PLCASAHESDRVVQISG-DVPAVLNAL 210 (292)
Q Consensus 142 ~~~~~i~IP~~-------~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~---p~~~~~~~~~r~v~I~G-~~~~v~~A~ 210 (292)
..+.++.||.+ ++|.|||++|.+||+|+++|||+|.|...... +........+-.|.|.+ +.+++.+|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 34678888854 78999999999999999999999999632110 00000002345677775 578999999
Q ss_pred HHHHHHHhcC
Q 022746 211 VEIGNQLREN 220 (292)
Q Consensus 211 ~~I~~~l~~~ 220 (292)
.+|.+++...
T Consensus 91 ~~Ie~Ll~~v 100 (119)
T 2yqr_A 91 KLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhch
Confidence 9999998753
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.46 E-value=1.8e-07 Score=74.71 Aligned_cols=76 Identities=17% Similarity=0.398 Sum_probs=56.0
Q ss_pred eEEEEEeeCCc------cceeecCCCchhhhhhhhcCcEEEEccCCCC------------------CCceEEEEecCCCC
Q 022746 50 VLFRIIVPSRQ------IGKVIGKEGHRIQKIREETKATIKIADAIAR------------------HEERVIIISSKDND 105 (292)
Q Consensus 50 ~~~rilvp~~~------vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~------------------~~ervv~I~G~~~~ 105 (292)
++-|+.||.+. +|.|||++|.++|+|+++|||+|.|...... .+.--|.|++....
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 56789999766 8999999999999999999999999853211 11226888886432
Q ss_pred -cchhHHHHHHHHHHHHHhcC
Q 022746 106 -NVVSDAENALQQIAALILKD 125 (292)
Q Consensus 106 -~~v~~v~~A~~~I~~~i~~~ 125 (292)
.....+++|+.+|..++...
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~ 102 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHHCCCC
Confidence 11125778888888887653
No 68
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.13 E-value=2.3e-06 Score=84.35 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCcchhhcccCCCcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcc
Q 022746 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187 (292)
Q Consensus 108 v~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 187 (292)
+..+.+++..|.+.+.+......... ....+....+.||.+.++.|||+||++||.|+++|||+|.+.
T Consensus 536 L~~A~~g~~~I~~~m~~al~~~~~~~----~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-------- 603 (630)
T 3u1k_A 536 IQQASVAKKEILQIMNKTISKPRASR----KENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-------- 603 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCSSC----CTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh----cccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc--------
Confidence 34556677777777766543221111 112345788999999999999999999999999999999983
Q ss_pred cCCCCCCcEEEEEcC-HHHHHHHHHHHHHHH
Q 022746 188 ASAHESDRVVQISGD-VPAVLNALVEIGNQL 217 (292)
Q Consensus 188 ~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~l 217 (292)
++..|.|.|+ .+...+|+.+|..++
T Consensus 604 -----d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 604 -----DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp -----SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred -----CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 3578999887 578899999887654
No 69
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.11 E-value=2.8e-06 Score=67.85 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=55.3
Q ss_pred EEEEEeccC------cceeeecCCChhHHHHHHhhCCeEEEeCCCCCC------------cccCCCCCCcEEEEEcCH--
Q 022746 144 TIRLLIAGS------QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP------------LCASAHESDRVVQISGDV-- 203 (292)
Q Consensus 144 ~~~i~IP~~------~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p------------~~~~~~~~~r~v~I~G~~-- 203 (292)
+.++.||.+ ++|.|||++|.++|+|+++|||+|.|..+...- .... -..+-.|.|++..
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~-~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEH-LNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHT-TTSCCEEEEEECSCC
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccc-cCCCcEEEEEecCch
Confidence 567888844 599999999999999999999999997532110 0000 0223478898853
Q ss_pred ----HHHHHHHHHHHHHHhcC
Q 022746 204 ----PAVLNALVEIGNQLREN 220 (292)
Q Consensus 204 ----~~v~~A~~~I~~~l~~~ 220 (292)
..+.+|+.+|..+|...
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~ 102 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHHCCCC
Confidence 27899999999998754
No 70
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.88 E-value=3.4e-05 Score=60.54 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=60.4
Q ss_pred EEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022746 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (292)
Q Consensus 144 ~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 220 (292)
...|.+....++.|+|++|+.|+.|+..|++.|++..-+. +..-.|+|.|++..-..|..+|..+....
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s--------~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP--------ERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT--------TSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC--------CCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999975432 45788999999999999999998877543
No 71
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.68 E-value=1.9e-05 Score=63.28 Aligned_cols=104 Identities=16% Similarity=0.265 Sum_probs=72.9
Q ss_pred eEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcCCCCC
Q 022746 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSN 129 (292)
Q Consensus 50 ~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~~~~~ 129 (292)
-.+.|+|+...+|+.||++|++|+.|+++.|-+|.+-+... + -...|.+.+.......
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~---d-------------------~~~fI~naLsPA~V~~ 93 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSS---D-------------------LERIVKNLFPGVKIES 93 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCS---S-------------------HHHHHHHHSTTSCEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCC---C-------------------HHHHHHHhcCCceEEE
Confidence 34889999999999999999999999999999988865311 0 1112223322211000
Q ss_pred cchhhcccCCCcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEe
Q 022746 130 SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179 (292)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~ 179 (292)
- ..... .......+.||.++.+..|||+|.+++-...-||.+|.+.
T Consensus 94 V---~i~~~-~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 94 I---NVRER-NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp E---EEEEE-TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred E---EEeec-CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 0 00000 1234788999999999999999999999999998887763
No 72
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.67 E-value=1.2e-05 Score=79.29 Aligned_cols=63 Identities=24% Similarity=0.322 Sum_probs=51.6
Q ss_pred CeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHH
Q 022746 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAAL 121 (292)
Q Consensus 49 ~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~ 121 (292)
.-.+.|.||.+.+|.|||+||++||+|+++|||+|.|.+. ..|.|.+... .++.+|+.+|..+
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~------G~V~I~~~~~----~~~~~A~~~I~~i 628 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE------ETFSVFAPTP----SAMHEARDFITEI 628 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS------SEEEEEESSH----HHHHHHHHHTTC-
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcCC------cEEEEEeCCH----HHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999853 5799999653 3567777666543
No 73
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.62 E-value=2.9e-05 Score=77.49 Aligned_cols=96 Identities=22% Similarity=0.254 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCcchhhcccCCCcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcc
Q 022746 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187 (292)
Q Consensus 108 v~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 187 (292)
+..+.+++..|.+.+.+......... ....+....+.||.+.++.|||+||.+||.|+++||++|.+.
T Consensus 539 L~~A~~g~~~I~~~m~~al~~~r~~~----~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-------- 606 (726)
T 4aid_A 539 LAQAKEGRAHILGEMNKAMDAPRADV----GDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-------- 606 (726)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCSSC----CSSCCC--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh----cccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE--------
Confidence 44556777778888776543221111 112344678899999999999999999999999999999983
Q ss_pred cCCCCCCcEEEEEcC-HHHHHHHHHHHHHHHhcC
Q 022746 188 ASAHESDRVVQISGD-VPAVLNALVEIGNQLREN 220 (292)
Q Consensus 188 ~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~l~~~ 220 (292)
++..|.|.+. .+++.+|+..|..++.+.
T Consensus 607 -----ddG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 607 -----DDGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp ------------CCSCHHHHHHHHHC--------
T ss_pred -----CCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 3456777665 678899999998887654
No 74
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.43 E-value=0.00023 Score=55.82 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=53.8
Q ss_pred eEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHH
Q 022746 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI 122 (292)
Q Consensus 50 ~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i 122 (292)
-++.|.+.++.++.|||++|+.|+.|+..|++.|++....+ +.+--|+|.|++. .-.+|..+|..+.
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-~g~tEVtIfG~~~-----~Q~rak~MI~sLA 122 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-ERRAEIWIFGPPP-----FRRDVDRMLTDLA 122 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-TSCEEEEEESCHH-----HHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC-CCcEEEEEECCHH-----HHHHHHHHHHHHH
Confidence 35778889999999999999999999999999999997643 3566799999863 3345666666654
No 75
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.27 E-value=0.00015 Score=58.08 Aligned_cols=103 Identities=21% Similarity=0.175 Sum_probs=72.1
Q ss_pred cEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcCCC
Q 022746 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222 (292)
Q Consensus 143 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~ 222 (292)
..+.+.|+...+|..||++|++|+.|+++.|-+|.+..- +.+ ....|.+.|.=..
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~----------s~d--------------~~~fI~naLsPA~- 90 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEY----------SSD--------------LERIVKNLFPGVK- 90 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEEC----------CSS--------------HHHHHHHHSTTSC-
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEc----------CCC--------------HHHHHHHhcCCce-
Confidence 378999999999999999999999999999999998753 223 1222333221110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEeccCccceeeecCCCccHHHHHHhhCCCCcc
Q 022746 223 RQVISISPAYNYSAIRPAQPFVEPTSGYSMFLMQNTRYFVTAIFAVLSSFNIFFLITTSSLGQPL 287 (292)
Q Consensus 223 ~~~~~~~p~~n~~~~~~~~~~~~~~~~~~~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~S~~~~~~ 287 (292)
...+ +. ...++.....+.||.+..+..||| +|.|++-..+-+|..+-|
T Consensus 91 --V~~V----~i----------~~~~~~~~~~V~V~~~q~slAIGk-~G~NvrLa~~Ltg~~idI 138 (144)
T 2cxc_A 91 --IESI----NV----------RERNGVKQVVIKVSEDDKGAAIGK-GGKNVKRARLVLSKLFGV 138 (144)
T ss_dssp --EEEE----EE----------EEETTEEEEEEEECTTTHHHHHCG-GGHHHHHHHHHHHHHHCE
T ss_pred --EEEE----EE----------eecCCcEEEEEEEChHHhhhccCC-CCHHHHHHHHHhCCeeCc
Confidence 0000 00 000124577889999999999999 999999999888765443
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.97 E-value=0.00013 Score=72.81 Aligned_cols=64 Identities=28% Similarity=0.426 Sum_probs=9.6
Q ss_pred eEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHh
Q 022746 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALIL 123 (292)
Q Consensus 50 ~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~ 123 (292)
-...|.||.+.++.|||+||.+||+|+++||++|.+.+. ..|.|.+... .++.+|+.+|..+..
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd------G~v~I~~~~~----~~~~~A~~~i~~i~~ 633 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD------GVVKVSASDG----AKIKAAIDWIKSITD 633 (726)
T ss_dssp C-------------------------------------------------CCSCH----HHHHHHHHC------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC------ceEEEEeCCH----HHHHHHHHHHHHHhh
Confidence 356788999999999999999999999999999999853 5688888653 456677777766654
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.26 E-value=0.003 Score=54.94 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=66.7
Q ss_pred CccceeecCCCchhhhh-hhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcCCCCCcchhhccc
Q 022746 59 RQIGKVIGKEGHRIQKI-REETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAA 137 (292)
Q Consensus 59 ~~vg~IIGk~G~~Ik~I-~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~~~~~~~~~~~~~ 137 (292)
+-+|+-||++|++|+.| ++-.|-+|.|-... ++ ....|.+.+.......-. .
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s---~d-------------------p~~fi~nalsPA~V~~V~-----i 178 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD---DD-------------------PARFVANALSPAKVVSVS-----V 178 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC---SS-------------------HHHHHHHHTTTSCCSEEE-----E
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEec---CC-------------------HHHHHHhccCCcceEEEE-----E
Confidence 45899999999999999 66678777776431 10 112233333332211100 0
Q ss_pred CCCcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCC
Q 022746 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183 (292)
Q Consensus 138 ~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~ 183 (292)
.......+.+.||..+.+.-|||+|.+++--..-||.+|.|....+
T Consensus 179 ~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 179 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred EcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 0001247899999999999999999999999999999999976443
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.14 E-value=0.0041 Score=57.03 Aligned_cols=104 Identities=24% Similarity=0.281 Sum_probs=71.4
Q ss_pred EEEEeeC-----CccceeecCCCchhhhhhhhc-CcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcC
Q 022746 52 FRIIVPS-----RQIGKVIGKEGHRIQKIREET-KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (292)
Q Consensus 52 ~rilvp~-----~~vg~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~ 125 (292)
.|+-|-+ +-+|+.||++|++|+.|.++. |-+|.|-... ++ ....|.+.+...
T Consensus 237 aKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~s-------------~d---------p~~fi~nalsPA 294 (366)
T 1k0r_A 237 SKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYD-------------DD---------PARFVANALSPA 294 (366)
T ss_dssp EEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC-------------SS---------HHHHHHHHTTTS
T ss_pred EEEEEEeCCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEEcC-------------CC---------HHHHHHHhcCCc
Confidence 3555544 569999999999999999998 7777765431 11 112233333332
Q ss_pred CCCCcchhhcccCCCcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCC
Q 022746 126 DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182 (292)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~ 182 (292)
....-. .. ......+.+.||..+.+..|||+|.+++-...-||.+|.|....
T Consensus 295 ~V~~V~--~~---~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 295 KVVSVS--VI---DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp CCSEEE--EE---ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred ceeEEE--EE---cCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 211100 00 01134789999999999999999999999999999999997643
No 79
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.88 E-value=0.0027 Score=63.54 Aligned_cols=95 Identities=21% Similarity=0.233 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCcchhhcccCCCcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcc
Q 022746 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187 (292)
Q Consensus 108 v~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 187 (292)
+..+.++...|.+.+.+.......... ...+....+.||.+.++.+||++|.+|+.|.+++|+.|.+.
T Consensus 529 l~~A~~~~~~I~~~m~~al~~~~~~~~----~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~-------- 596 (723)
T 3cdi_A 529 LNQAKGARLHILGVMEQAINAPRGDIS----EFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE-------- 596 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHCC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhcc----ccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEec--------
Confidence 344566666777777654332211111 11234577889999999999999999999999999999873
Q ss_pred cCCCCCCcEEEEEcC-HHHHHHHHHHHHHHHhc
Q 022746 188 ASAHESDRVVQISGD-VPAVLNALVEIGNQLRE 219 (292)
Q Consensus 188 ~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~l~~ 219 (292)
.+..|.|.+. ...+.+|...|..++.+
T Consensus 597 -----~dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 597 -----DDGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp ---------------------------------
T ss_pred -----CCccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 2456677665 45777787777666543
No 80
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=95.43 E-value=0.016 Score=52.78 Aligned_cols=95 Identities=25% Similarity=0.284 Sum_probs=65.1
Q ss_pred CccceeecCCCchhhhhhhhc-CcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcCCCCCcchhhccc
Q 022746 59 RQIGKVIGKEGHRIQKIREET-KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAA 137 (292)
Q Consensus 59 ~~vg~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~~~~~~~~~~~~~ 137 (292)
+-+|+.||.+|++|+.+.++. |-+|.+-.- +++ -...|.+.|.......- ..
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~-------------s~d---------~~~fi~nal~Pa~v~~v-----~~ 297 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKW-------------SDD---------PKQLIANALAPATVIEV-----EI 297 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEEC-------------CSS---------HHHHHHHHTCSSCCSEE-----EE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEec-------------CCC---------HHHHHHHhcCccEEEEE-----EE
Confidence 458999999999999999997 656655432 111 11233344332211100 00
Q ss_pred CCCcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeC
Q 022746 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180 (292)
Q Consensus 138 ~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~ 180 (292)
.......+.+.||..+.+.-|||+|.+++--..-||.+|.+.+
T Consensus 298 ~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 298 LDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp EETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred EcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 0012347899999999999999999999999999999999864
No 81
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=94.88 E-value=0.013 Score=50.87 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=63.9
Q ss_pred CcceeeecCCChhHHHH-HHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 022746 152 SQAGCLIGMSGQNIEKL-RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISP 230 (292)
Q Consensus 152 ~~vg~IIGk~G~~Ik~I-~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~~~~~~~~p 230 (292)
+-+|..||++|++|+.| ++-.|-+|.+..- +.+ ....|.+.|.-..-....-
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~----------s~d--------------p~~fi~nalsPA~V~~V~i--- 178 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY----------DDD--------------PARFVANALSPAKVVSVSV--- 178 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC----------CSS--------------HHHHHHHHTTTSCCSEEEE---
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEe----------cCC--------------HHHHHHhccCCcceEEEEE---
Confidence 45799999999999999 7778999999753 233 2233333332211000000
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEEEeccCccceeeecCCCccHHHHHHhhCCCCcc
Q 022746 231 AYNYSAIRPAQPFVEPTSGYSMFLMQNTRYFVTAIFAVLSSFNIFFLITTSSLGQPL 287 (292)
Q Consensus 231 ~~n~~~~~~~~~~~~~~~~~~~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~S~~~~~~ 287 (292)
.+ .+.....+.||.+..+.-||| +|.||+-..+.+|..+.|
T Consensus 179 -------------~~--~~~~~a~V~V~~~qlslAIGk-~GqNvrLA~~Ltg~~idI 219 (251)
T 2asb_A 179 -------------ID--QTARAARVVVPDFQLSLAIGK-EGQNARLAARLTGWRIDI 219 (251)
T ss_dssp -------------EE--TTTTEEEEEECGGGHHHHHCG-GGHHHHHHHHHHSCEEEE
T ss_pred -------------Ec--CCCcEEEEEEChHHhhhhhcC-CcCcHHHHHHHHCCEecc
Confidence 00 012367899999999999999 999999999999987655
No 82
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=94.63 E-value=0.017 Score=52.99 Aligned_cols=102 Identities=13% Similarity=0.133 Sum_probs=69.5
Q ss_pred EEEEEecc-----CcceeeecCCChhHHHHHHhh-CCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHH
Q 022746 144 TIRLLIAG-----SQAGCLIGMSGQNIEKLRNSS-GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217 (292)
Q Consensus 144 ~~~i~IP~-----~~vg~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l 217 (292)
..++.|-+ +-+|.+||++|++|+.|.++. |-+|.|..- +.+ ....|.+.|
T Consensus 236 RaKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~----------s~d--------------p~~fi~nal 291 (366)
T 1k0r_A 236 RSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDY----------DDD--------------PARFVANAL 291 (366)
T ss_dssp EEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC----------CSS--------------HHHHHHHHT
T ss_pred eEEEEEEeCCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEEc----------CCC--------------HHHHHHHhc
Confidence 34555544 567999999999999999998 999999753 233 223333333
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEeccCccceeeecCCCccHHHHHHhhCCCCccc
Q 022746 218 RENPPRQVISISPAYNYSAIRPAQPFVEPTSGYSMFLMQNTRYFVTAIFAVLSSFNIFFLITTSSLGQPLL 288 (292)
Q Consensus 218 ~~~~~~~~~~~~p~~n~~~~~~~~~~~~~~~~~~~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~S~~~~~~~ 288 (292)
.-..-....- . ..+.....+.||.+..+..||| +|.|++-..+.+|..+.|.
T Consensus 292 sPA~V~~V~~----------------~--~~~~~~a~V~V~~~qlslAIGk-~GqNvrLA~~Ltg~~idI~ 343 (366)
T 1k0r_A 292 SPAKVVSVSV----------------I--DQTARAARVVVPDFQLSLAIGK-EGQNARLAARLTGWRIDIR 343 (366)
T ss_dssp TTSCCSEEEE----------------E--ETTTTEEEEEECGGGHHHHHCG-GGHHHHHHHHHHCCEEEEE
T ss_pred CCcceeEEEE----------------E--cCCCcEEEEEEChHHhhhccCC-CcHHHHHHHHHHCCeeeee
Confidence 2211000000 0 0113478899999999999999 9999999999999877653
No 83
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.47 E-value=0.0024 Score=64.11 Aligned_cols=92 Identities=24% Similarity=0.301 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCcchhhcccCCCcccEEEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcc
Q 022746 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187 (292)
Q Consensus 108 v~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 187 (292)
+..+.+++..|.+.+.+..... .... ...+....+.||.+.++.+||++|.+||.|++++|+.|.+.
T Consensus 568 L~~A~~~~~~I~~~m~~al~~~-~~~~----~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~-------- 634 (757)
T 1e3p_A 568 LKQARDARLHILDVMMEAIDTP-DEMS----PNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIE-------- 634 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSC-CCCC----TTSCBCCCC------------------CTTCCCCCSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhccc-cccc----ccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEec--------
Confidence 3455666677777776543322 1111 11233456789999999999999999999999999999884
Q ss_pred cCCCCCCcEEEEEcC-HHHHHHHHHHHHHHH
Q 022746 188 ASAHESDRVVQISGD-VPAVLNALVEIGNQL 217 (292)
Q Consensus 188 ~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~l 217 (292)
.+..|.|++. .....+|...|..+.
T Consensus 635 -----~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 635 -----DDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ----------CCCBSSHHHHCC---------
T ss_pred -----CCceEEEecCCHHHHHHHHHHHHHhc
Confidence 2456666664 456666766665554
No 84
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.96 E-value=0.0099 Score=59.47 Aligned_cols=63 Identities=32% Similarity=0.517 Sum_probs=0.0
Q ss_pred CeEEEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCCCCcchhHHHHHHHHHHHH
Q 022746 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAAL 121 (292)
Q Consensus 49 ~~~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~ 121 (292)
.....+.||.+.++.+||++|.+|+.|.++||+.|.+.+ +..+.|.+... ..+.+|..+|..+
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------dg~v~I~~~~~----~~~~~a~~~i~~i 621 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATDG----EKAKHAIRRIEEI 621 (723)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC------CccEEEecCCH----HHHHHHHHHHHHH
Confidence 344677889999999999999999999999999998885 35688877643 2344555555444
No 85
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=93.28 E-value=0.057 Score=49.17 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=64.0
Q ss_pred CcceeeecCCChhHHHHHHhh-CCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 022746 152 SQAGCLIGMSGQNIEKLRNSS-GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISP 230 (292)
Q Consensus 152 ~~vg~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~~~~~~~~p 230 (292)
+-+|.+||.+|.+|+.+.++. |-+|.+..-+ .+ ....|.+.|.-..-... .
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s----------~d--------------~~~fi~nal~Pa~v~~v-~--- 296 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWS----------DD--------------PKQLIANALAPATVIEV-E--- 296 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECC----------SS--------------HHHHHHHHTCSSCCSEE-E---
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecC----------CC--------------HHHHHHHhcCccEEEEE-E---
Confidence 467999999999999999987 8899987532 22 12333333321100000 0
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEEEeccCccceeeecCCCccHHHHHHhhCCCCccc
Q 022746 231 AYNYSAIRPAQPFVEPTSGYSMFLMQNTRYFVTAIFAVLSSFNIFFLITTSSLGQPLL 288 (292)
Q Consensus 231 ~~n~~~~~~~~~~~~~~~~~~~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~S~~~~~~~ 288 (292)
. . ..+.....+.||.+..+.-||| +|.||+--.+.+|..+.|+
T Consensus 297 ---~---------~--d~~~~~~~v~v~~~~~s~AIGk-~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 297 ---I---------L--DKENKAARVLVPPTQLSLAIGK-GGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp ---E---------E--ETTTTEEEEEECTTSHHHHHCG-GGHHHHHHHHHHSCEEEEE
T ss_pred ---E---------E--cCCCCEEEEEEChHHcchhhcC-CCccHHHHHHHHCCEecee
Confidence 0 0 0113478899999999999999 9999999999999876553
No 86
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.91 E-value=0.009 Score=60.04 Aligned_cols=46 Identities=37% Similarity=0.630 Sum_probs=16.9
Q ss_pred EEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCC
Q 022746 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103 (292)
Q Consensus 52 ~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~ 103 (292)
..|.||.+.+|.+||++|.+|++|+++||+.|.+.+ +..|.|++..
T Consensus 600 ~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~~ 645 (757)
T 1e3p_A 600 ITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAAD 645 (757)
T ss_dssp CCC------------------CTTCCCCCSCC--------------CCCBSS
T ss_pred EEEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecCC
Confidence 457789999999999999999999999999999884 3568888764
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=84.95 E-value=0.33 Score=38.91 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=26.1
Q ss_pred EEEEEeeCCccceeecCCCchhhhhhhhcC
Q 022746 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETK 80 (292)
Q Consensus 51 ~~rilvp~~~vg~IIGk~G~~Ik~I~~~tg 80 (292)
++.|-+..+..|.||||.|.+++.||--+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 466667789999999999999999998874
No 88
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=78.72 E-value=0.56 Score=34.22 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=24.3
Q ss_pred EEEEEeeCCccceeecCCCchhhhhhhh
Q 022746 51 LFRIIVPSRQIGKVIGKEGHRIQKIREE 78 (292)
Q Consensus 51 ~~rilvp~~~vg~IIGk~G~~Ik~I~~~ 78 (292)
.+++.|....-|.|||++|+.|++|+.+
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4778888899999999999999888765
No 89
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=68.83 E-value=1.7 Score=34.75 Aligned_cols=28 Identities=7% Similarity=-0.005 Sum_probs=24.2
Q ss_pred EEEEEeccCccceeeecCCCccHHHHHHh
Q 022746 252 MFLMQNTRYFVTAIFAVLSSFNIFFLITT 280 (292)
Q Consensus 252 ~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~ 280 (292)
++.+.+-.+-.|.|||| .|.|++.||--
T Consensus 34 ~i~i~i~ged~glLIGK-~G~TL~ALQyL 61 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGE-KGYRYKALSYL 61 (152)
T ss_dssp EEEEEEEEGGGTTTTCG-GGHHHHHHHHH
T ss_pred EEEEEEecCCcceEECC-CCcchHHHHHH
Confidence 56677778999999999 99999999854
No 90
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=68.63 E-value=1.4 Score=32.00 Aligned_cols=28 Identities=7% Similarity=-0.164 Sum_probs=23.6
Q ss_pred EEEEEeccCccceeeecCCCccHHHHHHh
Q 022746 252 MFLMQNTRYFVTAIFAVLSSFNIFFLITT 280 (292)
Q Consensus 252 ~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~ 280 (292)
.++|.|-...-|.|||+ +|..|++|+..
T Consensus 36 ~i~I~I~tarPg~vIGk-kG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGE-KGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCG-GGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcC-CcHHHHHHHHH
Confidence 45777778889999999 99999998764
No 91
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=68.37 E-value=11 Score=28.05 Aligned_cols=58 Identities=16% Similarity=0.375 Sum_probs=40.4
Q ss_pred cCCCchhhhhhhhcCcEEEEccC---CC--------------CCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcC
Q 022746 66 GKEGHRIQKIREETKATIKIADA---IA--------------RHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (292)
Q Consensus 66 Gk~G~~Ik~I~~~tga~I~i~~~---~~--------------~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~ 125 (292)
|+||.++++. +|.+++.+.-. .| -+.+..++|+.........+-..|+.++.+++.+.
T Consensus 24 GpGGQnVNKv--~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a 98 (108)
T 2jva_A 24 GAGGQNVNKV--SSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRADALLRLSELIVNA 98 (108)
T ss_dssp TCSSSSSCCC--CCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCC--cceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999875 45566665311 11 01245688888888777888899999998888653
No 92
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=57.75 E-value=12 Score=28.05 Aligned_cols=58 Identities=22% Similarity=0.447 Sum_probs=39.5
Q ss_pred cCCCchhhhhhhhcCcEEE--EccC--CC--------------CCCceEEEEecCCCCcchhHHHHHHHHHHHHHhcC
Q 022746 66 GKEGHRIQKIREETKATIK--IADA--IA--------------RHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (292)
Q Consensus 66 Gk~G~~Ik~I~~~tga~I~--i~~~--~~--------------~~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~ 125 (292)
|+||.++++.. |.+++. ++.. .| -+.+..|+|+.........+-..|+.++.++|.+.
T Consensus 31 GpGGQnVNKv~--SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a 106 (112)
T 1j26_A 31 GPGGQNVNKVN--SKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEA 106 (112)
T ss_dssp CSSSSCCSSCC--CEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCc--ceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHHHHHHHHHHHHHHHHh
Confidence 89999998754 334443 3321 01 12345689988888777888899999999988653
No 93
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=56.52 E-value=2.3 Score=36.20 Aligned_cols=34 Identities=15% Similarity=0.370 Sum_probs=27.5
Q ss_pred EEEEEeeCCccceeecCCCchhhhhhhhcCcEEE
Q 022746 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84 (292)
Q Consensus 51 ~~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~ 84 (292)
.+.+.+.....|.||||.|.++..||.-+..-++
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 3555567778999999999999999998875443
No 94
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=54.76 E-value=4.2 Score=34.80 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=24.8
Q ss_pred EEEEEeeCCccceeecCCCchhhhhhhhc
Q 022746 51 LFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (292)
Q Consensus 51 ~~rilvp~~~vg~IIGk~G~~Ik~I~~~t 79 (292)
-+++.|....-|.|||++|+.|++|+...
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 36788888999999999999999887664
No 95
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.20 E-value=4.2 Score=34.18 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=23.1
Q ss_pred EEEEeeCCccceeecCCCchhhhhhhh
Q 022746 52 FRIIVPSRQIGKVIGKEGHRIQKIREE 78 (292)
Q Consensus 52 ~rilvp~~~vg~IIGk~G~~Ik~I~~~ 78 (292)
+++.|....-|.|||++|+.|++|+..
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 567778888999999999999987764
No 96
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=50.66 E-value=28 Score=29.35 Aligned_cols=59 Identities=22% Similarity=0.197 Sum_probs=44.3
Q ss_pred EEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEcCHHHHHHHHHHHHHH
Q 022746 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216 (292)
Q Consensus 145 ~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~ 216 (292)
.-+.++...+.+++|+++..+..|.+.+++.|.+- .+..|-|.++......+...|..+
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG-------------~NG~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG-------------QNGLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC-------------TTSEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE-------------CCcEEEEeCCchhHHHHHHHHHHH
Confidence 44678888889999999999999999999999882 344666888877555444445443
No 97
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=49.94 E-value=5.5 Score=34.19 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=25.1
Q ss_pred EEEEEeeCCccceeecCCCchhhhhhhhc
Q 022746 51 LFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (292)
Q Consensus 51 ~~rilvp~~~vg~IIGk~G~~Ik~I~~~t 79 (292)
.+++.|....-|.|||++|+.|++|+...
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 47788888999999999999999988763
No 98
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=49.52 E-value=4.3 Score=34.50 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=25.0
Q ss_pred EEEEEeeCCccceeecCCCchhhhhhhhc
Q 022746 51 LFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (292)
Q Consensus 51 ~~rilvp~~~vg~IIGk~G~~Ik~I~~~t 79 (292)
.+++.|....-|.|||++|+.|++|+...
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 46788889999999999999999887653
No 99
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=46.98 E-value=30 Score=26.98 Aligned_cols=58 Identities=21% Similarity=0.366 Sum_probs=40.5
Q ss_pred cCCCchhhhhhhhcCcEEEEcc---CCCC--------------CCceEEEEecCCCCcchhHHHHHHHHHHHHHhcC
Q 022746 66 GKEGHRIQKIREETKATIKIAD---AIAR--------------HEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (292)
Q Consensus 66 Gk~G~~Ik~I~~~tga~I~i~~---~~~~--------------~~ervv~I~G~~~~~~v~~v~~A~~~I~~~i~~~ 125 (292)
|+||.++++. +|.|++.++- ..|. +.+..|+|..........+-..|+..+.++|.+.
T Consensus 24 GpGGQnVNKv--~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~A~~rL~~~l~~a 98 (140)
T 4dh9_Y 24 GAGGQHVNKT--STAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKEL 98 (140)
T ss_dssp SSSSHHHHTT--CCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccc--cceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHHHHHHHHHHHHHh
Confidence 8999999964 6777777531 1121 1233578888777767788889999998888664
No 100
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=42.69 E-value=8.8 Score=32.84 Aligned_cols=28 Identities=7% Similarity=-0.185 Sum_probs=23.5
Q ss_pred EEEEEeccCccceeeecCCCccHHHHHHh
Q 022746 252 MFLMQNTRYFVTAIFAVLSSFNIFFLITT 280 (292)
Q Consensus 252 ~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~ 280 (292)
.++|.|-...-|.|||+ +|..|++|+..
T Consensus 45 ~i~I~I~t~rPg~VIGk-kG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGE-NGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTT-TTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcC-CchhHHHHHHH
Confidence 45677778889999999 99999988764
No 101
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=42.38 E-value=4.6 Score=33.80 Aligned_cols=27 Identities=33% Similarity=0.672 Sum_probs=22.3
Q ss_pred EEEEeeCCccceeecCCCchhhhhhhh
Q 022746 52 FRIIVPSRQIGKVIGKEGHRIQKIREE 78 (292)
Q Consensus 52 ~rilvp~~~vg~IIGk~G~~Ik~I~~~ 78 (292)
+++.|....-|.|||++|+.|++|+.+
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 556677788899999999999988764
No 102
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=41.96 E-value=7.2 Score=32.91 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=22.6
Q ss_pred EEEEeeCCccceeecCCCchhhhhhhhc
Q 022746 52 FRIIVPSRQIGKVIGKEGHRIQKIREET 79 (292)
Q Consensus 52 ~rilvp~~~vg~IIGk~G~~Ik~I~~~t 79 (292)
+++.|....-|.|||++|+.|++|+++.
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHH
Confidence 4556677778999999999999987754
No 103
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=40.78 E-value=8.1 Score=33.07 Aligned_cols=27 Identities=41% Similarity=0.650 Sum_probs=22.1
Q ss_pred EEEEeeCCccceeecCCCchhhhhhhh
Q 022746 52 FRIIVPSRQIGKVIGKEGHRIQKIREE 78 (292)
Q Consensus 52 ~rilvp~~~vg~IIGk~G~~Ik~I~~~ 78 (292)
+++.|....-|.|||++|+.|++|+..
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 445566778899999999999988775
No 104
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=40.09 E-value=5.2 Score=34.35 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=25.4
Q ss_pred eEEEEEeeCCccceeecCCCchhhhhhhhc
Q 022746 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (292)
Q Consensus 50 ~~~rilvp~~~vg~IIGk~G~~Ik~I~~~t 79 (292)
..+++.|....-|.|||++|+.|++|++..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 346778888899999999999999988764
No 105
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=39.48 E-value=5.4 Score=34.04 Aligned_cols=27 Identities=33% Similarity=0.672 Sum_probs=22.5
Q ss_pred EEEEeeCCccceeecCCCchhhhhhhh
Q 022746 52 FRIIVPSRQIGKVIGKEGHRIQKIREE 78 (292)
Q Consensus 52 ~rilvp~~~vg~IIGk~G~~Ik~I~~~ 78 (292)
+++.|....-|.|||++|+.|++|+.+
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 566677788899999999999988764
No 106
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.54 E-value=8.6 Score=32.25 Aligned_cols=27 Identities=7% Similarity=-0.251 Sum_probs=22.4
Q ss_pred EEEEeccCccceeeecCCCccHHHHHHh
Q 022746 253 FLMQNTRYFVTAIFAVLSSFNIFFLITT 280 (292)
Q Consensus 253 ~~v~iP~~~vG~IIGk~gG~~Ik~I~~~ 280 (292)
+++.|-...-|.|||+ +|..|++|+..
T Consensus 42 ~~I~I~t~rPg~vIG~-~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGR-GGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCS-SSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcC-CchhHHHHHHH
Confidence 4666777888999999 99999998764
No 107
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=37.30 E-value=10 Score=33.21 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=27.6
Q ss_pred CeEEEEEeeCC-ccceeecCCCchhhhhhhh--------cCcEEEEc
Q 022746 49 DVLFRIIVPSR-QIGKVIGKEGHRIQKIREE--------TKATIKIA 86 (292)
Q Consensus 49 ~~~~rilvp~~-~vg~IIGk~G~~Ik~I~~~--------tga~I~i~ 86 (292)
.+...++|..+ +-+.||||+|+.||+|..+ .|++|.+.
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 35567777774 5788999999999977554 56655554
No 108
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=37.20 E-value=67 Score=26.99 Aligned_cols=59 Identities=12% Similarity=0.114 Sum_probs=43.1
Q ss_pred EEEEeccCcceeeecCCChhHHHHHHhhCCeEEEeCCCCCCcccCCCCCCcEEEEEc-CHHHHHHHHHHHHHH
Q 022746 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG-DVPAVLNALVEIGNQ 216 (292)
Q Consensus 145 ~~i~IP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~ 216 (292)
.-+.++...+.+++|+++..+..|.+.+++.|.+= .+..|-|.+ +...+..+...|..+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG-------------~NG~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVA-------------RNGRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEE-------------TTTEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEe-------------CCCEEEEecCCHHHHHHHHHHHHHH
Confidence 45678888999999999999999998999999883 245666776 444555444444443
No 109
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=37.10 E-value=11 Score=32.19 Aligned_cols=28 Identities=7% Similarity=-0.176 Sum_probs=23.9
Q ss_pred EEEEEeccCccceeeecCCCccHHHHHHh
Q 022746 252 MFLMQNTRYFVTAIFAVLSSFNIFFLITT 280 (292)
Q Consensus 252 ~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~ 280 (292)
.++|.|-...-|.|||+ +|..|++|+..
T Consensus 48 ~i~I~I~tarPg~vIGk-kG~~I~~L~~~ 75 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGV-EGKKHKELTQF 75 (243)
T ss_dssp CEEEEEEESCHHHHHCS-SSHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECC-CchHHHHHHHH
Confidence 45777778889999999 99999998874
No 110
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=35.66 E-value=9.2 Score=32.43 Aligned_cols=28 Identities=7% Similarity=-0.140 Sum_probs=24.0
Q ss_pred EEEEEeccCccceeeecCCCccHHHHHHh
Q 022746 252 MFLMQNTRYFVTAIFAVLSSFNIFFLITT 280 (292)
Q Consensus 252 ~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~ 280 (292)
.+++.|-...-|.|||+ +|..|++|+..
T Consensus 45 ~i~I~I~tarPg~vIGk-kG~~I~~L~~~ 72 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGE-KGRRIRELTSV 72 (227)
T ss_dssp EECCEEECTTHHHHHCS-SSSHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcC-CchhHHHHHHH
Confidence 56777888899999999 99999998764
No 111
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=33.55 E-value=15 Score=32.21 Aligned_cols=32 Identities=6% Similarity=-0.146 Sum_probs=25.3
Q ss_pred eeEEEEEecc-CccceeeecCCCccHHHHHHhhC
Q 022746 250 YSMFLMQNTR-YFVTAIFAVLSSFNIFFLITTSS 282 (292)
Q Consensus 250 ~~~~~v~iP~-~~vG~IIGk~gG~~Ik~I~~~S~ 282 (292)
.+...+.|.. ++-|-|||| +|++||+|.....
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~-~g~~ik~i~~~ar 271 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGK-KGQRLKEIGKRAR 271 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCG-GGHHHHHHHHHHH
T ss_pred EEEEEEEEccCCcceEEEcC-CcHHHHHHHHHHH
Confidence 4667777876 466889999 9999999877653
No 112
>1wlp_A Cytochrome B-245 light chain; SH3 domain, polyproline, oxidoreductase/signaling protein complex; NMR {Homo sapiens}
Probab=33.22 E-value=22 Score=19.24 Aligned_cols=12 Identities=17% Similarity=0.086 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCC
Q 022746 5 GEITVNPTVSVV 16 (292)
Q Consensus 5 ~~~~~~~~~~~~ 16 (292)
+.+|.+|||+++
T Consensus 6 kqpP~nPPPRpP 17 (26)
T 1wlp_A 6 KQPPSNPPPRPP 17 (26)
T ss_dssp CCCCSSCCCCCC
T ss_pred cCCCCCcCCCCc
Confidence 456777777655
No 113
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=31.93 E-value=8.8 Score=32.54 Aligned_cols=30 Identities=7% Similarity=-0.178 Sum_probs=24.5
Q ss_pred EEEEEeccCccceeeecCCCccHHHHHHhhC
Q 022746 252 MFLMQNTRYFVTAIFAVLSSFNIFFLITTSS 282 (292)
Q Consensus 252 ~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~S~ 282 (292)
.+.+.+...-.|.+||| .|.+++.||--..
T Consensus 93 ~i~i~i~g~d~g~LIGk-~G~tLdALQyL~~ 122 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGK-RGQTLDSLQYLVS 122 (225)
T ss_dssp EEEEEEECHHHHHCSTT-HHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecC-CCeEhHHHHHHHH
Confidence 45666667789999999 9999999987643
No 114
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=30.50 E-value=34 Score=28.78 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=35.6
Q ss_pred EEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecC
Q 022746 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102 (292)
Q Consensus 53 rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~ 102 (292)
-+.++...+..++|+++..++.|.+.+++.|-+-.+ -.|-|.+.
T Consensus 139 v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~N------G~IWi~~~ 182 (229)
T 2ba0_A 139 IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQN------GLIWVNGD 182 (229)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTT------SEEEEESC
T ss_pred EEEECHHHhHHHhcCCchHHHHhcccCCeEEEEECC------cEEEEeCC
Confidence 356788889999999999999999999999998754 23557765
No 115
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=29.43 E-value=78 Score=26.57 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=37.3
Q ss_pred EEEEeeCCccceeecCCCchhhhhhhhcCcEEEEccCCCCCCceEEEEecCC
Q 022746 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103 (292)
Q Consensus 52 ~rilvp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~ 103 (292)
+-+.++...+..++|++|..++.|.+++++.|-+-.+ ..|-|.+..
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~N------G~IWi~~~~ 195 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVARN------GRIHLECPN 195 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEETT------TEEEEECSC
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeCC------CEEEEecCC
Confidence 3457788899999999999999999999999988753 346687753
No 116
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=29.05 E-value=10 Score=31.68 Aligned_cols=27 Identities=4% Similarity=-0.154 Sum_probs=21.5
Q ss_pred EEEEeccCccceeeecCCCccHHHHHHh
Q 022746 253 FLMQNTRYFVTAIFAVLSSFNIFFLITT 280 (292)
Q Consensus 253 ~~v~iP~~~vG~IIGk~gG~~Ik~I~~~ 280 (292)
+++.|-...-|.|||+ +|+.|++|+..
T Consensus 63 i~I~I~~~rpg~viGk-~G~~i~~L~~~ 89 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGK-KGEDVEKLRKV 89 (206)
T ss_dssp BCCEEEESCHHHHHCS-SSHHHHHHHHH
T ss_pred EEEEEEECCCCccccC-cchHHHHHHHH
Confidence 3455667788999999 99999988753
No 117
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=28.32 E-value=16 Score=31.92 Aligned_cols=32 Identities=9% Similarity=0.006 Sum_probs=24.1
Q ss_pred eeEEEEEecc-CccceeeecCCCccHHHHHHhhC
Q 022746 250 YSMFLMQNTR-YFVTAIFAVLSSFNIFFLITTSS 282 (292)
Q Consensus 250 ~~~~~v~iP~-~~vG~IIGk~gG~~Ik~I~~~S~ 282 (292)
+....+.|.. .+.+.|||| +|++||+|...+.
T Consensus 229 ~i~~~i~ve~~~~k~iiig~-~g~~lk~i~~~ar 261 (301)
T 1wf3_A 229 YIKAILYVERPSQKAIVIGE-GGRKIKEIGQATR 261 (301)
T ss_dssp EEEEEEEESSHHHHHHHHCG-GGHHHHHHHHHHH
T ss_pred EEEEEEEEeeCCceEEEEeC-CchHHHHHHHHHH
Confidence 3455666664 566999999 9999999987653
No 118
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=28.30 E-value=14 Score=31.11 Aligned_cols=27 Identities=7% Similarity=-0.114 Sum_probs=21.1
Q ss_pred EEEEeccCccceeeecCCCccHHHHHHh
Q 022746 253 FLMQNTRYFVTAIFAVLSSFNIFFLITT 280 (292)
Q Consensus 253 ~~v~iP~~~vG~IIGk~gG~~Ik~I~~~ 280 (292)
++|.|-...-|.|||+ +|..|++|++.
T Consensus 72 i~I~I~~~rPg~vIGk-~g~~i~~L~~~ 98 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIEN-RPQGVEDLKIN 98 (218)
T ss_dssp BCCEEEESCTTTTSCS-SSCTTHHHHHH
T ss_pred EEEEEEecCCCcEecC-CcHHHHHHHHH
Confidence 3455566778999999 99999998764
No 119
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=28.10 E-value=12 Score=32.09 Aligned_cols=28 Identities=7% Similarity=-0.164 Sum_probs=23.8
Q ss_pred EEEEEeccCccceeeecCCCccHHHHHHh
Q 022746 252 MFLMQNTRYFVTAIFAVLSSFNIFFLITT 280 (292)
Q Consensus 252 ~~~v~iP~~~vG~IIGk~gG~~Ik~I~~~ 280 (292)
.+++.|-...-|.|||+ +|..|++|+..
T Consensus 45 ~i~I~I~tarPg~vIGk-kG~~I~~L~~~ 72 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGE-KGRRIRELTAV 72 (243)
T ss_dssp EECCEEEESCHHHHHCG-GGHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcC-CchHHHHHHHH
Confidence 55677778889999999 99999998875
No 120
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=27.33 E-value=17 Score=31.02 Aligned_cols=26 Identities=8% Similarity=-0.129 Sum_probs=20.8
Q ss_pred EEEeccCccceeeecCCCccHHHHHHh
Q 022746 254 LMQNTRYFVTAIFAVLSSFNIFFLITT 280 (292)
Q Consensus 254 ~v~iP~~~vG~IIGk~gG~~Ik~I~~~ 280 (292)
+|.|-...-|.|||+ +|..|++|+..
T Consensus 65 ~I~I~tarPg~vIGk-kG~~I~~L~~~ 90 (239)
T 2vqe_C 65 AVTVHVAKPGVVIGR-GGERIRVLREE 90 (239)
T ss_dssp CCEEEESCGGGTSCS-SSSHHHHHHHH
T ss_pred EEEEEeCCCcceecC-CchHHHHHHHH
Confidence 455556778999999 99999988764
No 121
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=27.12 E-value=12 Score=31.95 Aligned_cols=27 Identities=4% Similarity=-0.154 Sum_probs=21.7
Q ss_pred EEEEeccCccceeeecCCCccHHHHHHh
Q 022746 253 FLMQNTRYFVTAIFAVLSSFNIFFLITT 280 (292)
Q Consensus 253 ~~v~iP~~~vG~IIGk~gG~~Ik~I~~~ 280 (292)
++|.|-...-|.|||+ +|..|++|+..
T Consensus 64 i~I~I~t~rPg~vIGk-kG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGK-KGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCS-TTHHHHHHHHH
T ss_pred EEEEEEECCCCccccC-cchHHHHHHHH
Confidence 4556667788999999 99999988753
No 122
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=22.67 E-value=16 Score=32.03 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=23.6
Q ss_pred EEEeeC-CccceeecCCCchhhhhhhh--------cCcEEEEc
Q 022746 53 RIIVPS-RQIGKVIGKEGHRIQKIREE--------TKATIKIA 86 (292)
Q Consensus 53 rilvp~-~~vg~IIGk~G~~Ik~I~~~--------tga~I~i~ 86 (292)
.+.|.. ++-+.||||+|+.||+|..+ .|++|.+.
T Consensus 233 ~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~ 275 (301)
T 1wf3_A 233 ILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLD 275 (301)
T ss_dssp EEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred EEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEE
Confidence 445543 45688999999999976554 46666554
No 123
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=20.43 E-value=47 Score=26.69 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.5
Q ss_pred eEEEEEeeCCccceeecCCCchhhhh-hhhc
Q 022746 50 VLFRIIVPSRQIGKVIGKEGHRIQKI-REET 79 (292)
Q Consensus 50 ~~~rilvp~~~vg~IIGk~G~~Ik~I-~~~t 79 (292)
+...+.||.+..|.+|| .+|+++ ++++
T Consensus 7 l~~~i~I~P~~~~~~i~---~~I~~~L~~~~ 34 (187)
T 1go3_E 7 IADVVKVPPEEFGKDLK---ETVKKILMEKY 34 (187)
T ss_dssp EEEEEEECGGGTTSCHH---HHHHHHHHHHH
T ss_pred EEEEEEECHHHhCccHH---HHHHHHHHHHh
Confidence 45678999999999999 699995 9989
Done!