BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022748
         (292 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8LG98|OTUBL_ARATH Ubiquitin thioesterase otubain-like OS=Arabidopsis thaliana
           GN=At1g28120 PE=2 SV=2
          Length = 306

 Score =  429 bits (1103), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/279 (73%), Positives = 234/279 (83%), Gaps = 7/279 (2%)

Query: 14  DDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQY 73
           ++W N      ++ Q   + EEA KVP+V DKEPLS+LA+EYQSGSPILLEKIK+L  QY
Sbjct: 24  EEWGNCSS---VEDQPSFQEEEAAKVPYVGDKEPLSSLAAEYQSGSPILLEKIKILDSQY 80

Query: 74  AAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFED 133
             IRRTRGDGNCFFRSFMFSYLEHIL SQD+AEVDRIK  VE+CR+TLQ+LG+ DFTFED
Sbjct: 81  IGIRRTRGDGNCFFRSFMFSYLEHILESQDRAEVDRIKVNVEKCRKTLQNLGYTDFTFED 140

Query: 134 FFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPF 193
           FFALFLEQLD++LQG E SIS+ ELV RSRDQSVSDY+VMFFRFVT+G+IR R++FFEPF
Sbjct: 141 FFALFLEQLDDILQGTEESISYDELVNRSRDQSVSDYIVMFFRFVTAGDIRTRADFFEPF 200

Query: 194 ILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHH 253
           I GL+NATV+QFCKSSVEPMGEESDH+HITALSDALGV IRVVYLDRSSCDSGG +VNHH
Sbjct: 201 ITGLSNATVDQFCKSSVEPMGEESDHIHITALSDALGVAIRVVYLDRSSCDSGGVTVNHH 260

Query: 254 DFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILYPK 292
           DF+P             E + PFITLLYRPGHYDILYPK
Sbjct: 261 DFVPV----GITNEKDEEASAPFITLLYRPGHYDILYPK 295


>sp|Q96FW1|OTUB1_HUMAN Ubiquitin thioesterase OTUB1 OS=Homo sapiens GN=OTUB1 PE=1 SV=2
          Length = 271

 Score =  199 bits (505), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/289 (41%), Positives = 167/289 (57%), Gaps = 27/289 (9%)

Query: 2   QNQEKCGASCEFDDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPI 61
           Q QE  G+  E  +   + DE IM QQ  I+ E A + P V+++  LS L  EY     I
Sbjct: 9   QKQEPLGSDSEGVNCLAY-DEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNI 67

Query: 62  LLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTL 121
             +KIK L ++Y+ IR+TR DGNCF+R+F FS+LE +L   D  E+ R KA   + +  L
Sbjct: 68  YQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALL--DDSKELQRFKAVSAKSKEDL 125

Query: 122 QSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSG 181
            S G  +FT EDF   F++ ++ V    E   S  +L+    DQS SDY+V++ R +TSG
Sbjct: 126 VSQGFTEFTIEDFHNTFMDLIEQV----EKQTSVADLLASFNDQSTSDYLVVYLRLLTSG 181

Query: 182 EIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRS 241
            +++ S+FFE FI G    TV++FC+  VEPM +ESDH+HI AL+ AL V I+V Y+DR 
Sbjct: 182 YLQRESKFFEHFIEG--GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRG 239

Query: 242 SCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILY 290
                G + N H F               E + P + LLYRPGHYDILY
Sbjct: 240 E----GGTTNPHIF--------------PEGSEPKVYLLYRPGHYDILY 270


>sp|B2RYG6|OTUB1_RAT Ubiquitin thioesterase OTUB1 OS=Rattus norvegicus GN=Otub1 PE=1
           SV=1
          Length = 271

 Score =  199 bits (505), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/289 (41%), Positives = 167/289 (57%), Gaps = 27/289 (9%)

Query: 2   QNQEKCGASCEFDDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPI 61
           Q QE  G+  E  +   + DE IM QQ  I+ E A + P V+++  LS L  EY     I
Sbjct: 9   QKQEPLGSDSEGVNCLAY-DEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNI 67

Query: 62  LLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTL 121
             +KIK L ++Y+ IR+TR DGNCF+R+F FS+LE +L   D  E+ R KA   + +  L
Sbjct: 68  YQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALL--DDSKELQRFKAVSAKSKEDL 125

Query: 122 QSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSG 181
            S G  +FT EDF   F++ ++ V    E   S  +L+    DQS SDY+V++ R +TSG
Sbjct: 126 VSQGFTEFTIEDFHNTFMDLIEQV----EKQTSVADLLASFNDQSTSDYLVVYLRLLTSG 181

Query: 182 EIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRS 241
            +++ S+FFE FI G    TV++FC+  VEPM +ESDH+HI AL+ AL V I+V Y+DR 
Sbjct: 182 YLQRESKFFEHFIEG--GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRG 239

Query: 242 SCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILY 290
                G + N H F               E + P + LLYRPGHYDILY
Sbjct: 240 E----GGTTNPHVF--------------PEGSEPKVYLLYRPGHYDILY 270


>sp|Q7TQI3|OTUB1_MOUSE Ubiquitin thioesterase OTUB1 OS=Mus musculus GN=Otub1 PE=1 SV=2
          Length = 271

 Score =  199 bits (505), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/289 (41%), Positives = 167/289 (57%), Gaps = 27/289 (9%)

Query: 2   QNQEKCGASCEFDDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPI 61
           Q QE  G+  E  +   + DE IM QQ  I+ E A + P V+++  LS L  EY     I
Sbjct: 9   QKQEPLGSDSEGVNCLAY-DEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNI 67

Query: 62  LLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTL 121
             +KIK L ++Y+ IR+TR DGNCF+R+F FS+LE +L   D  E+ R KA   + +  L
Sbjct: 68  YQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALL--DDSKELQRFKAVSAKSKEDL 125

Query: 122 QSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSG 181
            S G  +FT EDF   F++ ++ V    E   S  +L+    DQS SDY+V++ R +TSG
Sbjct: 126 VSQGFTEFTIEDFHNTFMDLIEQV----EKQTSVADLLASFNDQSTSDYLVVYLRLLTSG 181

Query: 182 EIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRS 241
            +++ S+FFE FI G    TV++FC+  VEPM +ESDH+HI AL+ AL V I+V Y+DR 
Sbjct: 182 YLQRESKFFEHFIEG--GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRG 239

Query: 242 SCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILY 290
                G + N H F               E + P + LLYRPGHYDILY
Sbjct: 240 E----GGTTNPHVF--------------PEGSEPKVYLLYRPGHYDILY 270


>sp|Q9VL00|OTUBL_DROME Ubiquitin thioesterase otubain-like OS=Drosophila melanogaster
           GN=CG4968 PE=2 SV=1
          Length = 262

 Score =  195 bits (495), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 115/273 (42%), Positives = 158/273 (57%), Gaps = 25/273 (9%)

Query: 21  DEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTR 80
           DE I+QQ+ DI+ E +   P V+++ PL+ L +EY SG  I   KI+ L ++Y  IRRTR
Sbjct: 12  DELIIQQKRDIEKEISDTTPLVSEQLPLTCLYAEY-SGDEIFTAKIQDLSKKYKFIRRTR 70

Query: 81  GDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLE 140
            DGNCFFR+F +SYLE++++  + +     K   EE +  L  LG   FT EDF   F+E
Sbjct: 71  PDGNCFFRAFAYSYLEYLIS--NTSAYQEFKKLAEESKEKLVQLGFPSFTLEDFHETFME 128

Query: 141 QLDNVLQGNE--FSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILGLT 198
            +  V   N    S    EL     +Q  SDYVV++ R +TSG++++ ++F++ FI G  
Sbjct: 129 VIQRVSPDNAGGHSTVQDELHKIFNEQGYSDYVVVYLRLITSGKLQEEADFYQNFIEG-- 186

Query: 199 NATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPT 258
           + T+E F    VEPM +ESDH+HI AL  ALG  +RV YLDR      G +V  HDF   
Sbjct: 187 DLTIEAFRHLEVEPMYKESDHIHIIALCTALGAGVRVEYLDRGE----GGTVKAHDF--- 239

Query: 259 PGDCPNATSGSTETTIPFITLLYRPGHYDILYP 291
                       E + P I L+YRPGHYDILYP
Sbjct: 240 -----------PEGSEPRIYLIYRPGHYDILYP 261


>sp|Q9XVR6|OTUBL_CAEEL Ubiquitin thioesterase otubain-like OS=Caenorhabditis elegans
           GN=otub-1 PE=1 SV=1
          Length = 284

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/277 (37%), Positives = 152/277 (54%), Gaps = 27/277 (9%)

Query: 20  EDEDIMQQQSDIKAEEAQK-VPFVADKEPLSALASEYQS-GSPILLEKIKVLGEQYAAIR 77
           +DE ++Q Q     E+ QK VP VA   P S L +EY +  S   L K   L E Y  IR
Sbjct: 21  DDEIVLQDQQLKTIEDEQKSVPLVATLAPFSILCAEYDNETSAAFLSKATELSEVYGEIR 80

Query: 78  RTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFAL 137
             RGDGNCF+R+ +   +E +L  +D+A +++  A   +  RTL  LG  D+T  DF   
Sbjct: 81  YIRGDGNCFYRAILVGLIEIML--KDRARLEKFIASSRDWTRTLVELGFPDWTCTDFCDF 138

Query: 138 FLEQLDNVLQGNEFSISHGELVVRS--RDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFIL 195
           F+E L+ +  G      H E  V +   D   ++Y++MFFR +TS  +++ SE + PFI 
Sbjct: 139 FIEFLEKIHSG-----VHTEEAVYTILNDDGSANYILMFFRLITSAFLKQNSEEYAPFID 193

Query: 196 GLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDF 255
                TV Q+C+  +EPM +++DH+ I +L  A G  +R+ Y+DR++  +GG    H+D 
Sbjct: 194 --EGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGW---HYDI 248

Query: 256 IPTPGDCPNATSGSTETTIPFITLLYRPGHYDILYPK 292
              P D         +   P ITLLYRPGHYD++Y K
Sbjct: 249 ---PSD--------DQQIAPEITLLYRPGHYDVIYKK 274


>sp|A8XDJ2|OTUBL_CAEBR Ubiquitin thioesterase otubain-like OS=Caenorhabditis briggsae
           GN=otub-1 PE=3 SV=1
          Length = 288

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/274 (37%), Positives = 152/274 (55%), Gaps = 23/274 (8%)

Query: 20  EDEDIMQQQSDIKAEEAQKV-PFVADKEPLSALASEY-QSGSPILLEKIKVLGEQYAAIR 77
           EDE I+Q Q   + E+ QK  P V +K P + L S Y Q  +P   EK   L + Y+ IR
Sbjct: 20  EDELILQDQQMKRIEDEQKASPLVGEKMPCATLVSLYDQETAPAFFEKANELAKVYSHIR 79

Query: 78  RTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFAL 137
             RGDGNCF R+     +E +L   D+  + +  A  +E    L  LG  D+T  DF   
Sbjct: 80  FIRGDGNCFIRAIQVGLVEILL--NDKERLVKFIASCKEWTERLVKLGFPDWTCTDFCEF 137

Query: 138 FLEQLDNVLQGNEFSISHGELVVRS-RDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILG 196
           F+E ++ V  G    I   E V R   D + ++Y++MFFR +TSG +++ +  +EPF+  
Sbjct: 138 FIEFIEKVRDG----IHQKEDVFRIFNDDNTANYLLMFFRLITSGYLKEHAAEYEPFLD- 192

Query: 197 LTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFI 256
               ++ Q+C++ +E M +ESDH+ I AL  AL + IR+ Y+DR++  +GG    HH+  
Sbjct: 193 -EGMSLAQYCETEIEAMWKESDHLGIIALVRALNIRIRIEYMDRNAAPNGGT---HHNL- 247

Query: 257 PTPGDCPNATSGSTETTIPFITLLYRPGHYDILY 290
                 P+    +T T  P ITLLYRPGHYD++Y
Sbjct: 248 ------PDGHDNATFT--PDITLLYRPGHYDLIY 273


>sp|Q96DC9|OTUB2_HUMAN Ubiquitin thioesterase OTUB2 OS=Homo sapiens GN=OTUB2 PE=1 SV=2
          Length = 234

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/230 (36%), Positives = 122/230 (53%), Gaps = 27/230 (11%)

Query: 61  ILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRT 120
           I   KI+ L +++ AIR+T+GDGNCF+R+  +SYLE +L      E+ + K +V +    
Sbjct: 27  IYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLGK--SREIFKFKERVLQTPND 84

Query: 121 LQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTS 180
           L + G  +  F +FF  F   ++ V +    S     L+    DQS SD++V F R +TS
Sbjct: 85  LLAAGFEEHKFRNFFNAFYSVVELVEKDGSVS----SLLKVFNDQSASDHIVQFLRLLTS 140

Query: 181 GEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDR 240
             IR R++FF  FI       ++ FC   VEPM  E DH+ ITALS AL + ++V Y+  
Sbjct: 141 AFIRNRADFFRHFI--DEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYV-- 196

Query: 241 SSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILY 290
              D    ++NHH F       P A +       P + LLY+  HY+ILY
Sbjct: 197 ---DEMDTALNHHVF-------PEAAT-------PSVYLLYKTSHYNILY 229


>sp|Q9CQX0|OTUB2_MOUSE Ubiquitin thioesterase OTUB2 OS=Mus musculus GN=Otub2 PE=2 SV=1
          Length = 234

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 121/230 (52%), Gaps = 27/230 (11%)

Query: 61  ILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRT 120
           I   KI+ L +++ +IR+T+GDGNCF+R+  +SYLE +L      E+ + K +V +    
Sbjct: 27  IYQRKIQELSKRFTSIRKTKGDGNCFYRALGYSYLESLLGK--SREILKFKERVLQTPND 84

Query: 121 LQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTS 180
           L + G  +  F +FF  F     +V++  E   S   L+    DQS SD +V F R +TS
Sbjct: 85  LLAAGFEEHKFRNFFNAFY----SVVELVEKDSSVSSLLKVFNDQSSSDRIVQFLRLLTS 140

Query: 181 GEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDR 240
             IR R++FF  FI       ++ FC   VEPM  E DHV ITALS AL + ++V Y+  
Sbjct: 141 AFIRNRADFFRHFI--DEEMDIKDFCTHEVEPMAMECDHVQITALSQALNIALQVEYV-- 196

Query: 241 SSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILY 290
              D    ++NHH F               E  IP + LLY+  HY+ILY
Sbjct: 197 ---DEMDTALNHHVF--------------PEAAIPSVYLLYKTSHYNILY 229


>sp|O42636|CIA30_NEUCR Complex I intermediate-associated protein 30, mitochondrial
           OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
           CBS 708.71 / DSM 1257 / FGSC 987) GN=cia30 PE=1 SV=1
          Length = 278

 Score = 35.0 bits (79), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 241 SSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHY 286
           S  D GG+S  H D++P P   P  T+G      P+  +   PG Y
Sbjct: 58  SDADVGGSSTAHLDWVPPPNAIPTVTAGDGSDRKPYTPI---PGSY 100


>sp|Q0VCW3|BANP_BOVIN Protein BANP OS=Bos taurus GN=BANP PE=2 SV=1
          Length = 503

 Score = 33.9 bits (76), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 54  EYQSGSPILLEKIKVLGEQYAAIRRTRGDGNC---FFRSFMFSYLEHILASQDQAEVDRI 110
           E   G P++LE   V  E   A++R R + NC     +SF++S  + I        +D I
Sbjct: 17  ELSPGHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSINQTIC-----LRLDSI 71

Query: 111 KAKVEECRRTLQSL 124
           +AK++    T +SL
Sbjct: 72  EAKLQALEATCKSL 85


>sp|Q09XV5|CHD8_MOUSE Chromodomain-helicase-DNA-binding protein 8 OS=Mus musculus GN=Chd8
           PE=1 SV=1
          Length = 2582

 Score = 32.0 bits (71), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 16/90 (17%)

Query: 189 FFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGA 248
           F +P + GL + T + F + + +P+ E            ALG+P  +  LD+ + D GG 
Sbjct: 9   FDDPNLFGLDSLTDDSFNQVTQDPIEE------------ALGLPSSLDSLDQMNQDGGGG 56

Query: 249 SVNH---HDFIPTPGDCPNATSGSTETTIP 275
            V +    D +P P +   +T    E+T P
Sbjct: 57  DVGNSSASDLVPPPEET-ASTELPKESTAP 85


>sp|Q9HCK8|CHD8_HUMAN Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8
           PE=1 SV=5
          Length = 2581

 Score = 31.6 bits (70), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 16/90 (17%)

Query: 189 FFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGA 248
           F +P + GL + T + F + + +P+ E            ALG+P  +  LD+ + D GG 
Sbjct: 9   FDDPNLFGLDSLTDDSFNQVTQDPIEE------------ALGLPSSLDSLDQMNQDGGGG 56

Query: 249 SVNH---HDFIPTPGDCPNATSGSTETTIP 275
            V +    + +P P +    T  S E+T P
Sbjct: 57  DVGNSSASELVPPPEET-APTELSKESTAP 85


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,312,477
Number of Sequences: 539616
Number of extensions: 4369111
Number of successful extensions: 11217
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 11173
Number of HSP's gapped (non-prelim): 19
length of query: 292
length of database: 191,569,459
effective HSP length: 116
effective length of query: 176
effective length of database: 128,974,003
effective search space: 22699424528
effective search space used: 22699424528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)