Query 022748
Match_columns 292
No_of_seqs 159 out of 388
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3991 Uncharacterized conser 100.0 5.1E-78 1.1E-82 529.8 23.3 246 20-292 11-256 (256)
2 PF10275 Peptidase_C65: Peptid 100.0 8.2E-74 1.8E-78 521.4 17.5 244 34-291 1-244 (244)
3 KOG2606 OTU (ovarian tumor)-li 99.3 2.6E-12 5.5E-17 118.3 5.5 84 157-241 170-263 (302)
4 PF02338 OTU: OTU-like cystein 99.1 1.7E-10 3.6E-15 93.5 6.6 53 175-238 29-82 (121)
5 COG5539 Predicted cysteine pro 98.4 8.8E-08 1.9E-12 88.4 0.5 202 50-290 17-230 (306)
6 KOG3288 OTU-like cysteine prot 97.4 0.0001 2.2E-09 67.3 3.2 92 175-291 141-232 (307)
7 COG5539 Predicted cysteine pro 94.7 0.026 5.6E-07 52.7 3.1 63 173-236 204-269 (306)
8 COG4805 Uncharacterized protei 70.8 35 0.00076 35.1 9.8 137 20-164 184-345 (588)
9 PRK06749 replicative DNA helic 60.1 15 0.00033 36.4 5.1 57 222-287 332-389 (428)
10 PRK08760 replicative DNA helic 58.3 14 0.0003 37.2 4.5 58 221-287 370-428 (476)
11 PRK07004 replicative DNA helic 56.9 13 0.00028 37.2 4.0 58 221-287 355-413 (460)
12 PRK05636 replicative DNA helic 56.2 19 0.00042 36.5 5.1 57 222-287 407-464 (505)
13 PRK09165 replicative DNA helic 54.3 16 0.00035 36.9 4.2 57 222-287 375-432 (497)
14 PF05412 Peptidase_C33: Equine 54.2 7.5 0.00016 31.3 1.4 13 80-92 5-17 (108)
15 PRK08006 replicative DNA helic 53.0 24 0.00052 35.5 5.2 58 221-287 367-425 (471)
16 PRK08506 replicative DNA helic 50.7 23 0.0005 35.6 4.6 58 221-287 333-391 (472)
17 PRK08840 replicative DNA helic 50.2 26 0.00057 35.2 4.9 58 221-287 360-418 (464)
18 KOG2605 OTU (ovarian tumor)-li 50.0 21 0.00046 34.9 4.1 51 172-227 245-295 (371)
19 PRK06904 replicative DNA helic 49.2 24 0.00052 35.5 4.5 58 221-287 365-423 (472)
20 PRK06321 replicative DNA helic 46.2 30 0.00065 34.9 4.6 57 222-287 371-428 (472)
21 PRK05595 replicative DNA helic 44.2 35 0.00077 33.8 4.8 57 222-287 343-400 (444)
22 TIGR03600 phage_DnaB phage rep 43.5 38 0.00083 33.1 4.8 58 221-287 335-393 (421)
23 COG0525 ValS Valyl-tRNA synthe 34.9 94 0.002 33.9 6.4 42 107-148 611-659 (877)
24 KOG0422 Ubiquitin-protein liga 33.8 84 0.0018 26.7 4.6 62 12-79 91-153 (153)
25 PF04844 Ovate: Transcriptiona 32.6 1.4E+02 0.003 21.5 5.0 15 130-144 4-18 (59)
26 KOG0662 Cyclin-dependent kinas 31.7 37 0.0008 30.6 2.3 13 224-236 146-158 (292)
27 PF02372 IL15: Interleukin 15; 30.3 2.6E+02 0.0056 23.3 7.1 69 78-146 47-134 (135)
28 PF04904 NCD1: NAB conserved r 29.1 14 0.00029 28.2 -0.7 45 188-239 23-67 (82)
29 PRK05748 replicative DNA helic 27.2 74 0.0016 31.5 3.9 58 221-287 346-404 (448)
30 TIGR00665 DnaB replicative DNA 24.5 1.1E+02 0.0024 29.9 4.6 58 221-287 336-394 (434)
31 KOG2274 Predicted importin 9 [ 24.0 3.1E+02 0.0066 30.2 7.8 48 183-231 779-835 (1005)
32 PF07004 SHIPPO-rpt: Sperm-tai 23.9 31 0.00068 20.5 0.4 7 283-289 4-10 (37)
33 PF11505 DUF3216: Protein of u 23.4 1.9E+02 0.004 22.8 4.6 41 83-123 38-82 (97)
34 PF02662 FlpD: Methyl-viologen 22.1 2.8E+02 0.0061 22.5 5.8 45 68-128 48-93 (124)
35 COG2733 Predicted membrane pro 21.9 5E+02 0.011 25.9 8.2 18 85-105 256-273 (415)
36 KOG1556 26S proteasome regulat 21.2 3.6E+02 0.0077 25.3 6.7 138 38-181 98-273 (309)
37 PRK06922 hypothetical protein; 20.5 3.1E+02 0.0067 29.2 6.9 59 127-185 261-320 (677)
No 1
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.1e-78 Score=529.79 Aligned_cols=246 Identities=55% Similarity=0.920 Sum_probs=233.8
Q ss_pred ChHHHHHHHHHHHHHHhhcCCccccCCChhHHHHhhccCChHHHHHHHHHHhhcccccccccCCcchhHHHHHHHHHHHH
Q 022748 20 EDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHIL 99 (292)
Q Consensus 20 ~d~~~~~q~~~i~~e~~~~~plVg~~~~~~~L~~eY~~~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~Ll 99 (292)
.|+.|++||.+|++|++++.|||+++.|++.|..||. ++++|.+||+.|.++|..+|++|||||||||||+|+|+|.|+
T Consensus 11 ~de~~~~~q~~~~~e~~~~~plvse~~~~s~l~~eY~-~d~iy~~KIq~Lsk~Y~~iR~trgDGNCfyra~~~s~lE~ll 89 (256)
T KOG3991|consen 11 DDEIILQDQLKIQEEESKTNPLVSEKAPLSSLYAEYF-GDPIYTTKIQELSKKYTVIRKTRGDGNCFYRAFAYSYLELLL 89 (256)
T ss_pred cchhhhhchHHHHHHHhhcCccccccccHHHHHHHhc-CChHHHHHHHHHHHHhhhhheecCCCceehHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999998 467999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhhccCchHHHHHHHHHH
Q 022748 100 ASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVT 179 (292)
Q Consensus 100 ~~~d~~e~~r~~~~i~~~~~~l~~~g~~~~~~edf~~~f~~~l~~i~~~~~~~~~~~~L~~~fnd~~~s~~iv~~lRllt 179 (292)
. |..++.+|++.+.+++..|..+||++|+++||++.|+++|+++..+ .+.++|+..|||+..|+|||+|||++|
T Consensus 90 ~--d~~~l~~fka~~~kt~~~L~~~gf~e~t~~dFh~~Fievle~v~~g----~sv~~l~~~~ndq~ssdyiV~ylRLvt 163 (256)
T KOG3991|consen 90 L--DRAELQKFKAAVEKTKETLVLLGFPEFTFEDFHDTFIEVLEDVEGG----TSVDELLKIFNDQSSSDYIVMYLRLVT 163 (256)
T ss_pred h--chHHHHHHHHHHHhhhHHHHHcCCCccchhhHHHHHHHHHHHHcCC----ccHHHHHHHHhccchhHHHHHHHHHHH
Confidence 8 8899999999999999999999999999999999999999999654 578999999999999999999999999
Q ss_pred HHHHhcccccccccccCCCcccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEecCCCCCCCCCccccccCCCCC
Q 022748 180 SGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTP 259 (292)
Q Consensus 180 s~~i~~n~d~y~~Fi~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ylD~~~~~~~~~~v~~~~f~p~~ 259 (292)
|++||+|+|+|+|||++ ++||.+||.++||||++|+|||+|.||++||++.|+|+|+||+.++ .++||+| |+.
T Consensus 164 S~~ik~~adfy~pFI~e--~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~----~~~hH~f-pe~ 236 (256)
T KOG3991|consen 164 SGFIKSNADFYQPFIDE--GMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGD----TVNHHDF-PEA 236 (256)
T ss_pred HHHHhhChhhhhccCCC--CCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCC----CCCCCcC-ccc
Confidence 99999999999999987 5799999999999999999999999999999999999999999853 5899999 552
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCccccccC
Q 022748 260 GDCPNATSGSTETTIPFITLLYRPGHYDILYPK 292 (292)
Q Consensus 260 ~~~~~~~~~~~~~~~p~v~LLyrPGHYDILY~~ 292 (292)
..|.|+||||||||||||||
T Consensus 237 -------------s~P~I~LLYrpGHYdilY~~ 256 (256)
T KOG3991|consen 237 -------------SAPEIYLLYRPGHYDILYKK 256 (256)
T ss_pred -------------cCceEEEEecCCccccccCC
Confidence 37999999999999999996
No 2
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=100.00 E-value=8.2e-74 Score=521.36 Aligned_cols=244 Identities=52% Similarity=0.903 Sum_probs=203.7
Q ss_pred HHhhcCCccccCCChhHHHHhhccCChHHHHHHHHHHhhcccccccccCCcchhHHHHHHHHHHHHccCCHHHHHHHHHH
Q 022748 34 EEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAK 113 (292)
Q Consensus 34 e~~~~~plVg~~~~~~~L~~eY~~~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~Ll~~~d~~e~~r~~~~ 113 (292)
|+++++||||+++|+++|.+||+.++|+|++|++.|.++|+++||||||||||||||+|+|||+|+.++|+.++++++++
T Consensus 1 ~~~~~~plv~~~~~~~~L~~ey~~~~~~~~~ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~~~~~~~~~~~~~~ 80 (244)
T PF10275_consen 1 EEEAQYPLVGEKEPLSALVKEYSDNDPIFQKKIKKLSQKYSGIRRVRGDGNCFYRAFGFSYLEQLLESPDDQEFERFLAR 80 (244)
T ss_dssp -HHCCS-SB---EETCHHHHCTTTTCHHHHHHHHHHHHHEEEEE-B-SSSTHHHHHHHHHHHHHHTT-HH--HHHHHHHH
T ss_pred CccccCCCCCCcccHHHHHHHHhccCHHHHHHHHHHHhhhhheEeecCCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45789999999999999999999889999999999999999999999999999999999999999998888899999999
Q ss_pred HHHHHHHHHHCCCCchhHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhhccCchHHHHHHHHHHHHHHhccccccccc
Q 022748 114 VEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPF 193 (292)
Q Consensus 114 i~~~~~~l~~~g~~~~~~edf~~~f~~~l~~i~~~~~~~~~~~~L~~~fnd~~~s~~iv~~lRllts~~i~~n~d~y~~F 193 (292)
+++++..+...||++++++||+++|+++|+++.++..+....++|++.|||+..++++|+|||++||+||+.|+++|+||
T Consensus 81 i~~~~~~l~~~~~~~~~~~~f~~~f~~~l~~i~~~~~~~~~~~~l~~~f~~~~~s~~iV~flRLlts~~l~~~~d~y~~f 160 (244)
T PF10275_consen 81 IKSLKFKLEAFGYDEEIFEDFYDEFLELLEKIANGESNSQRQEELLEAFNDEEISDYIVIFLRLLTSAYLKSNSDEYEPF 160 (244)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHCTSSHHH---HHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHhCcCcccHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 99999999999999999999999999999999765432222238999999999999999999999999999999999999
Q ss_pred ccCCCcccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCC
Q 022748 194 ILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETT 273 (292)
Q Consensus 194 i~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~ 273 (292)
+.+.+..++++||+++|+||++|+|||+|+|||+||++||+|+|+|++. .+.++++|.|+|.+ +..
T Consensus 161 i~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~---~~~~~~~~~~~~~~-----------~~~ 226 (244)
T PF10275_consen 161 IDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSV---EGDEVNRHEFPPDN-----------ESQ 226 (244)
T ss_dssp SSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSG---CSTTSEEEEES-SS-----------TTS
T ss_pred hcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCC---CCCccccccCCCcc-----------CCC
Confidence 9886557899999999999999999999999999999999999999982 25679999996652 124
Q ss_pred CCeEEEEecCCCcccccc
Q 022748 274 IPFITLLYRPGHYDILYP 291 (292)
Q Consensus 274 ~p~v~LLyrPGHYDILY~ 291 (292)
.|.|+|||||||||||||
T Consensus 227 ~~~i~LLyrpgHYdIly~ 244 (244)
T PF10275_consen 227 EPQITLLYRPGHYDILYP 244 (244)
T ss_dssp S-SEEEEEETBEEEEEEE
T ss_pred CCEEEEEEcCCccccccC
Confidence 799999999999999998
No 3
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.6e-12 Score=118.27 Aligned_cols=84 Identities=25% Similarity=0.321 Sum_probs=70.2
Q ss_pred HHHHHhhhcc----CchHHHHHHHHHHHHHHhcccccccccccCCCc------ccHHHHhhhhcccccccchHHHHHHHH
Q 022748 157 ELVVRSRDQS----VSDYVVMFFRFVTSGEIRKRSEFFEPFILGLTN------ATVEQFCKSSVEPMGEESDHVHITALS 226 (292)
Q Consensus 157 ~L~~~fnd~~----~s~~iv~~lRllts~~i~~n~d~y~~Fi~~~~~------~~~~~yC~~~Vep~~~e~d~v~I~ALa 226 (292)
-|+.+..+|. .....|.-||..||+||++|.++|.||+.++++ .++.+||. +|+-+.+|||+++|.|||
T Consensus 170 ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Yc~-eI~~t~~WGgelEL~AlS 248 (302)
T KOG2606|consen 170 CLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDKYCR-EIRNTAAWGGELELKALS 248 (302)
T ss_pred hhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHHHHH-HhhhhccccchHHHHHHH
Confidence 4666666653 334678999999999999999999999988753 25999999 566779999999999999
Q ss_pred HhhCCceEEEEecCC
Q 022748 227 DALGVPIRVVYLDRS 241 (292)
Q Consensus 227 ~aL~v~I~V~ylD~~ 241 (292)
..|++||.|+.-|++
T Consensus 249 hvL~~PI~Vy~~~~p 263 (302)
T KOG2606|consen 249 HVLQVPIEVYQADGP 263 (302)
T ss_pred HhhccCeEEeecCCC
Confidence 999999999876654
No 4
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.10 E-value=1.7e-10 Score=93.49 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=44.9
Q ss_pred HHHHHHHHHh-cccccccccccCCCcccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEe
Q 022748 175 FRFVTSGEIR-KRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYL 238 (292)
Q Consensus 175 lRllts~~i~-~n~d~y~~Fi~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~yl 238 (292)
+|..+..||+ .|.+.|.+|+.+. .+...+.||++++|.|||..|+++|.|+..
T Consensus 29 lR~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~Wg~~~el~a~a~~~~~~I~v~~~ 82 (121)
T PF02338_consen 29 LRKAVVDYLRDKNRDKFEEFLEGD-----------KMSKPGTWGGEIELQALANVLNRPIIVYSS 82 (121)
T ss_dssp HHHHHHHHHHTHTTTHHHHHHHHH-----------HHTSTTSHEEHHHHHHHHHHHTSEEEEECE
T ss_pred HHHHHHHHHHHhccchhhhhhhhh-----------hhccccccCcHHHHHHHHHHhCCeEEEEEc
Confidence 6667778888 8999999998541 567789999999999999999999999644
No 5
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=8.8e-08 Score=88.35 Aligned_cols=202 Identities=22% Similarity=0.265 Sum_probs=119.4
Q ss_pred HHHHhhccCChHHHHHHHHHHhhcccccccc-cCCcchhHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH------HHH
Q 022748 50 ALASEYQSGSPILLEKIKVLGEQYAAIRRTR-GDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRR------TLQ 122 (292)
Q Consensus 50 ~L~~eY~~~~~~~~~Ki~~L~~~y~~~R~vR-GDGNCFYRAf~F~ylE~Ll~~~d~~e~~r~~~~i~~~~~------~l~ 122 (292)
.+.+.|. ..+.++.||.-+.+++...|+-. =+|+|-+=+.+-+ ..|..++.+.-..=..+++ ...
T Consensus 17 lt~kq~~-e~~dlq~kI~~~~kql~~g~~~qrl~~k~~~ls~~ls-------~~~e~~i~k~~~~~~et~ea~q~~~l~~ 88 (306)
T COG5539 17 LTEKQRF-ELKDLQTKITRIMKQLTFGRPPQRLNGKCLDLSYALS-------QKDEVEIEKAPKLRAETNEADQEDSLTP 88 (306)
T ss_pred HHhhhhc-ccHHHHHHHHHHHHHHHccCchhhhccccchHHHHhh-------hhHHHHhhhhhhhcchhhccCCCccCCC
Confidence 4555665 46779999999999998877655 5999976555443 2232222111110001110 000
Q ss_pred HCCCCchhHHHHHHH----HHHHHHHHhcCCCCCCCHHHHHHHhhhccCchHHHHHHHHHHHHHHhcccccccccccCCC
Q 022748 123 SLGHADFTFEDFFAL----FLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILGLT 198 (292)
Q Consensus 123 ~~g~~~~~~edf~~~----f~~~l~~i~~~~~~~~~~~~L~~~fnd~~~s~~iv~~lRllts~~i~~n~d~y~~Fi~~~~ 198 (292)
.-.+++-++.-|... ++..++......++ .-+.++-. ...-+..|+.||..+|..+..|+|.|.+-+.+
T Consensus 89 ~q~~~~~~iss~e~s~~qq~~nv~ed~p~~~d~----srl~q~~~-~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~~-- 161 (306)
T COG5539 89 LQNIPELGISSFEKSVSQQSINVLEDMPGQDDN----SRLFQAER-YSLRDASVAKLREVVSLEVLSNPDLYNPAILE-- 161 (306)
T ss_pred cccCCccccccCcccccccccchhccCCCCCch----HHHHHHHH-hhhhhhhHHHHHHHHHHHHhhCccccchhhcC--
Confidence 011122222222222 22222221111000 11111100 01223478999999999999999999999987
Q ss_pred cccHHHHhhhhcccccccc-hHHHHHHHHHhhCCceEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeE
Q 022748 199 NATVEQFCKSSVEPMGEES-DHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFI 277 (292)
Q Consensus 199 ~~~~~~yC~~~Vep~~~e~-d~v~I~ALa~aL~v~I~V~ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v 277 (292)
.+...||..-| .+..|+ |+++|.+|+.+|++.|.|+-+|.+..+ .|.+.+ -...+
T Consensus 162 -~~~i~y~~~i~-k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~d---------r~~~~~-------------~~q~~ 217 (306)
T COG5539 162 -IDVIAYATWIV-KPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSED---------RYNSHP-------------YVQRI 217 (306)
T ss_pred -cchHHHHHhhh-ccccCCCceEEEeEeccccceeeeeeecchhHHh---------hccCCh-------------hhhhh
Confidence 46889999655 477788 999999999999999999888865421 132221 12457
Q ss_pred EEEecCCCccccc
Q 022748 278 TLLYRPGHYDILY 290 (292)
Q Consensus 278 ~LLyrPGHYDILY 290 (292)
..||.++|||-++
T Consensus 218 ~i~f~g~hfD~~t 230 (306)
T COG5539 218 SILFTGIHFDEET 230 (306)
T ss_pred hhhhcccccchhh
Confidence 8899999999875
No 6
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0001 Score=67.32 Aligned_cols=92 Identities=25% Similarity=0.359 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcccccccccccCCCcccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEecCCCCCCCCCcccccc
Q 022748 175 FRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHD 254 (292)
Q Consensus 175 lRllts~~i~~n~d~y~~Fi~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ylD~~~~~~~~~~v~~~~ 254 (292)
||.+.|...-.|++.|-.=+.| .+=.+||. -|.-+..|||-|+|..||.++++-|-|+-++... ++ .
T Consensus 141 lR~iiA~~Vasnp~~yn~AiLg---K~n~eYc~-WI~k~dsWGGaIElsILS~~ygveI~vvDiqt~r-------id--~ 207 (307)
T KOG3288|consen 141 LREIIAQEVASNPDKYNDAILG---KPNKEYCA-WILKMDSWGGAIELSILSDYYGVEICVVDIQTVR-------ID--R 207 (307)
T ss_pred HHHHHHHHHhcChhhhhHHHhC---CCcHHHHH-HHccccccCceEEeeeehhhhceeEEEEecceee-------eh--h
Confidence 5555566666678888766665 34589998 7888999999999999999999999987555432 22 3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcccccc
Q 022748 255 FIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILYP 291 (292)
Q Consensus 255 f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYDILY~ 291 (292)
|.+..+ -..+|.|||--=|||-|+.
T Consensus 208 fged~~------------~~~rv~llydGIHYD~l~m 232 (307)
T KOG3288|consen 208 FGEDKN------------FDNRVLLLYDGIHYDPLAM 232 (307)
T ss_pred cCCCCC------------CCceEEEEecccccChhhh
Confidence 544421 2468999999999999874
No 7
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.026 Score=52.73 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcccccccccccCCCc---ccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEE
Q 022748 173 MFFRFVTSGEIRKRSEFFEPFILGLTN---ATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVV 236 (292)
Q Consensus 173 ~~lRllts~~i~~n~d~y~~Fi~~~~~---~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ 236 (292)
.-+|..-..|.+.|.+.|.+|..++.. ..|.+||. +|++...|+..++|.|||..|++|+.+.
T Consensus 204 ~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~n-e~~~~a~~g~~~ei~qLas~lk~~~~~~ 269 (306)
T COG5539 204 SEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVN-EVLFDASDGITIEIQQLASLLKNPHYYT 269 (306)
T ss_pred HHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHh-hhcccccccchHHHHHHHHHhcCceEEe
Confidence 567777788888899999999988753 47999999 7999999999999999999999999885
No 8
>COG4805 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.78 E-value=35 Score=35.07 Aligned_cols=137 Identities=18% Similarity=0.246 Sum_probs=82.0
Q ss_pred ChHHHHHHHHHHHHHHhhcCCccccCCChh---------HHHHhhc-----cCChHHHHHHHHHHhhcc-ccccc-----
Q 022748 20 EDEDIMQQQSDIKAEEAQKVPFVADKEPLS---------ALASEYQ-----SGSPILLEKIKVLGEQYA-AIRRT----- 79 (292)
Q Consensus 20 ~d~~~~~q~~~i~~e~~~~~plVg~~~~~~---------~L~~eY~-----~~~~~~~~Ki~~L~~~y~-~~R~v----- 79 (292)
.-|..++|.+++..+..+..|++.....+. .|..+++ .-.|.|.+.+..|.+.|. .-|.+
T Consensus 184 ~le~~~~Q~~~~a~~~~ae~~~~~pl~~~~~~~~~~~~~~~~a~~~~ii~~qv~PA~~r~~aflaeey~~ka~~~~gv~~ 263 (588)
T COG4805 184 LLEKVIAQLRRIADAPGAETSFLVPLANRPADMSAANRADLRAEAAKIIEDQVLPAYARLIAFLAEEYRPKARHDAGVWR 263 (588)
T ss_pred HHHHHHHHHHHHhcCccccchhHhhhhccccccchhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCcccccccc
Confidence 356778888998888766677655433222 3445552 235889999999977763 33433
Q ss_pred ccCCcchhHHHHHHHHHHHHccCCHHHHHHH----HHHHH-HHHHHHHHCCCCchhHHHHHHHHHHHHHHHhcCCCCCCC
Q 022748 80 RGDGNCFFRSFMFSYLEHILASQDQAEVDRI----KAKVE-ECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSIS 154 (292)
Q Consensus 80 RGDGNCFYRAf~F~ylE~Ll~~~d~~e~~r~----~~~i~-~~~~~l~~~g~~~~~~edf~~~f~~~l~~i~~~~~~~~~ 154 (292)
-.||.-||+.+++.|--. ..+|++++++ +++|. ++.+.+.++||..= +-+..|+..+++-.. .+..+
T Consensus 264 LpdG~a~Ya~~~~~~TTt---~~tPdeihqlGL~eva~i~aqm~~~~~~~g~~~G---~~~~~f~~~l~~~~~--~~~~~ 335 (588)
T COG4805 264 LPDGDAYYAFALHLYTTT---DLTPDEIHQLGLEEVARIEAQMDQVAKQLGFTQG---QRLRAFMKMLRQDEA--FTDEG 335 (588)
T ss_pred CCCchHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---hHHHHHHHHhhcccc--ccccc
Confidence 357899999999987664 3367777654 34443 55667788999421 112334444443211 12234
Q ss_pred HHHHHHHhhh
Q 022748 155 HGELVVRSRD 164 (292)
Q Consensus 155 ~~~L~~~fnd 164 (292)
.++|++-.++
T Consensus 336 ~~qLL~~~~~ 345 (588)
T COG4805 336 REQLLAYYRE 345 (588)
T ss_pred HHHHHHHHHH
Confidence 5667754433
No 9
>PRK06749 replicative DNA helicase; Provisional
Probab=60.10 E-value=15 Score=36.36 Aligned_cols=57 Identities=28% Similarity=0.385 Sum_probs=34.0
Q ss_pred HHHHHHhhCCceEEE-EecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcc
Q 022748 222 ITALSDALGVPIRVV-YLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYD 287 (292)
Q Consensus 222 I~ALa~aL~v~I~V~-ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYD 287 (292)
++.||+-|++||-+. +|.|+.....+. .|.-.++.+. +.-+...-.|.+||||..||
T Consensus 332 LK~lAkel~vpVi~lsQLnR~~e~r~~k-------rP~lsDLR~S--G~IEqdAD~vl~l~R~~~y~ 389 (428)
T PRK06749 332 LKLLARELNVCVVALSQLSRSVESRQDK-------RPLLSDLRET--GQIEQDADVIMLMYREDYYD 389 (428)
T ss_pred HHHHHHHhCCeEEEEEecCccccccCCC-------CCchHhhhhc--ccccccCCEEEEEeeccccc
Confidence 688999999998776 677764211011 1322222211 12233467899999999885
No 10
>PRK08760 replicative DNA helicase; Provisional
Probab=58.27 E-value=14 Score=37.18 Aligned_cols=58 Identities=26% Similarity=0.452 Sum_probs=33.5
Q ss_pred HHHHHHHhhCCceEEE-EecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcc
Q 022748 221 HITALSDALGVPIRVV-YLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYD 287 (292)
Q Consensus 221 ~I~ALa~aL~v~I~V~-ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYD 287 (292)
.++.||+-|++||-+. +|.|+....... .|.-.++.+. +.-+...-.|.+||||..|+
T Consensus 370 ~LK~lAkel~ipVi~lsQLnR~~e~r~~k-------rP~lsDLreS--g~IeqdAD~vl~l~R~~~y~ 428 (476)
T PRK08760 370 SLKGLAKELNVPVIALSQLNRSLETRTDK-------RPVMADLRES--GAIEQDADMIVFIYRDDYYN 428 (476)
T ss_pred HHHHHHHHhCCEEEEeeccCccccccCCC-------CCCHHHHhhc--cchhcCCCEEEEEechhhcc
Confidence 4678899999998765 577654221111 1221111111 12233457899999999885
No 11
>PRK07004 replicative DNA helicase; Provisional
Probab=56.87 E-value=13 Score=37.24 Aligned_cols=58 Identities=22% Similarity=0.386 Sum_probs=34.0
Q ss_pred HHHHHHHhhCCceEEE-EecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcc
Q 022748 221 HITALSDALGVPIRVV-YLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYD 287 (292)
Q Consensus 221 ~I~ALa~aL~v~I~V~-ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYD 287 (292)
.+++||+-|++||-+. +|.|+.....+......++ -+++ .-+...-.|.+||||..|+
T Consensus 355 ~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDL-reSg--------~IeqdAD~v~~l~R~~~y~ 413 (460)
T PRK07004 355 SLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDL-RESG--------AIEQDADVILFIYRDEVYN 413 (460)
T ss_pred HHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHH-hcch--------hhhhcCCEEEEeccccccC
Confidence 4688999999998765 5776542211111222232 1221 1223456899999998885
No 12
>PRK05636 replicative DNA helicase; Provisional
Probab=56.17 E-value=19 Score=36.55 Aligned_cols=57 Identities=28% Similarity=0.461 Sum_probs=33.4
Q ss_pred HHHHHHhhCCceEEE-EecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcc
Q 022748 222 ITALSDALGVPIRVV-YLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYD 287 (292)
Q Consensus 222 I~ALa~aL~v~I~V~-ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYD 287 (292)
++.||+-|++||-+. +|.|+............++ -+++ .-+...-.|.+||||.-||
T Consensus 407 LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDL-reSG--------~IEqdAD~vl~l~R~~~y~ 464 (505)
T PRK05636 407 LKLLAKELDVPLIAISQLNRGPESRTDKRPQLADL-RESG--------SLEQDADMVMLLYRPDSQD 464 (505)
T ss_pred HHHHHHHhCCeEEEEeecCccccccCCCCCcHHHH-hhcc--------cccccCCEEEEEecccccC
Confidence 678999999998765 6777643211111112222 1221 2233456899999998775
No 13
>PRK09165 replicative DNA helicase; Provisional
Probab=54.29 E-value=16 Score=36.92 Aligned_cols=57 Identities=25% Similarity=0.410 Sum_probs=34.1
Q ss_pred HHHHHHhhCCceEEE-EecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcc
Q 022748 222 ITALSDALGVPIRVV-YLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYD 287 (292)
Q Consensus 222 I~ALa~aL~v~I~V~-ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYD 287 (292)
++.||+-+++||-+. +|.|+.....+. .|.-.++.+. +.-+...-.|.+||||..|+
T Consensus 375 LK~lAkel~ipVi~lsQLnR~~e~r~~k-------rP~lsDLr~S--g~IEqdAD~v~~l~R~~~y~ 432 (497)
T PRK09165 375 LKALAKELNIPVIALSQLSRQVEQRDDK-------RPQLSDLRES--GSIEQDADVVMFVYREEYYL 432 (497)
T ss_pred HHHHHHHhCCeEEEeecccchhhccCCC-------CCchhhhhhc--cchhccCCEEEEEeehhhhc
Confidence 688899999998765 677764221111 1222222211 22234467899999999886
No 14
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=54.18 E-value=7.5 Score=31.30 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=10.8
Q ss_pred ccCCcchhHHHHH
Q 022748 80 RGDGNCFFRSFMF 92 (292)
Q Consensus 80 RGDGNCFYRAf~F 92 (292)
-+||+|+|+.+.+
T Consensus 5 P~DG~CG~H~i~a 17 (108)
T PF05412_consen 5 PGDGSCGWHCIAA 17 (108)
T ss_pred CCCCchHHHHHHH
Confidence 3799999998765
No 15
>PRK08006 replicative DNA helicase; Provisional
Probab=52.98 E-value=24 Score=35.51 Aligned_cols=58 Identities=31% Similarity=0.472 Sum_probs=34.8
Q ss_pred HHHHHHHhhCCceEEE-EecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcc
Q 022748 221 HITALSDALGVPIRVV-YLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYD 287 (292)
Q Consensus 221 ~I~ALa~aL~v~I~V~-ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYD 287 (292)
.+++||+-|++||-+. +|.|+.... .+=.|.-.++.+. +.-+...-.|.+||||..|+
T Consensus 367 ~LK~lAkel~ipVi~LsQLnR~~e~r-------~dkrP~lsDLreS--G~IEqdAD~v~~l~R~~~y~ 425 (471)
T PRK08006 367 SLKALAKELQVPVVALSQLNRSLEQR-------ADKRPVNSDLRES--GSIEQDADLIMFIYRDEVYH 425 (471)
T ss_pred HHHHHHHHhCCeEEEEEecCcccccc-------CCCCCchhhhhhc--CcccccCCEEEEEecccccc
Confidence 6788999999998665 677764211 1111322222211 22234456899999998875
No 16
>PRK08506 replicative DNA helicase; Provisional
Probab=50.71 E-value=23 Score=35.58 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=34.3
Q ss_pred HHHHHHHhhCCceEEE-EecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcc
Q 022748 221 HITALSDALGVPIRVV-YLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYD 287 (292)
Q Consensus 221 ~I~ALa~aL~v~I~V~-ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYD 287 (292)
.+++||+-|++||-+. ++.|.............++ -++ +.-+...-.|.+||||..|+
T Consensus 333 ~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDL-reS--------g~IeqdAD~vl~l~R~~~y~ 391 (472)
T PRK08506 333 GLKLLARELDIPIIALSQLNRSLESRADKRPMLSDL-RES--------GAIEQDADIILFVYRDDVYK 391 (472)
T ss_pred HHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHh-hcc--------hhhhhcCCEEEEEecccccc
Confidence 4788899999999765 6777542111111122222 111 12233467899999998885
No 17
>PRK08840 replicative DNA helicase; Provisional
Probab=50.17 E-value=26 Score=35.17 Aligned_cols=58 Identities=29% Similarity=0.472 Sum_probs=34.5
Q ss_pred HHHHHHHhhCCceEEE-EecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcc
Q 022748 221 HITALSDALGVPIRVV-YLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYD 287 (292)
Q Consensus 221 ~I~ALa~aL~v~I~V~-ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYD 287 (292)
.+++||+-|+|||-+. +|.|+...... =.|.-.++.+. +.-+...-.|.+||||..|+
T Consensus 360 ~LK~lAkel~ipVi~LsQLnR~~e~r~~-------krP~lsDLreS--G~IEqdAD~v~~l~R~~~y~ 418 (464)
T PRK08840 360 SLKALAKELNVPVVALSQLNRSLEQRAD-------KRPVNSDLRES--GSIEQDADLIMFIYRDEVYN 418 (464)
T ss_pred HHHHHHHHhCCeEEEEEecCccccccCC-------CCCchHhhhhc--ccccccCCEEEEEecccccC
Confidence 6788999999998665 67775422111 01322222211 22334467899999998875
No 18
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=49.95 E-value=21 Score=34.90 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcccccccccccCCCcccHHHHhhhhcccccccchHHHHHHHHH
Q 022748 172 VMFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSD 227 (292)
Q Consensus 172 v~~lRllts~~i~~n~d~y~~Fi~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~ 227 (292)
=.+.|.....+++.+++.|..|+++ ++.+|-... ..-++|++|++++|+|.
T Consensus 245 ~~~~~~~~~dq~~~e~~~~~~~vt~----~~~~y~k~k-r~~~~~gnhie~Qa~a~ 295 (371)
T KOG2605|consen 245 HDHNRRECVDQLKKERDFYEDYVTE----DFTSYIKRK-RADGEPGNHIEQQAAAD 295 (371)
T ss_pred HHHHHHHHHHHHhhccccccccccc----chhhccccc-ccCCCCcchHHHhhhhh
Confidence 3567888899999999999999964 578887654 34679999999999997
No 19
>PRK06904 replicative DNA helicase; Validated
Probab=49.25 E-value=24 Score=35.50 Aligned_cols=58 Identities=29% Similarity=0.501 Sum_probs=34.4
Q ss_pred HHHHHHHhhCCceEEE-EecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcc
Q 022748 221 HITALSDALGVPIRVV-YLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYD 287 (292)
Q Consensus 221 ~I~ALa~aL~v~I~V~-ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYD 287 (292)
.+++||+-|++||-+. +|.|....... =.|.-.++.+. +.-+...-.|.+||||.-||
T Consensus 365 ~LK~lAkel~ipVi~lsQLnR~~e~r~~-------krP~lsDLreS--G~IEqdAD~v~~l~R~~~y~ 423 (472)
T PRK06904 365 SLKALAKELKVPVVALSQLNRTLENRGD-------KRPVNSDLRES--GSIEQDADLIMFIYRDEVYN 423 (472)
T ss_pred HHHHHHHHhCCeEEEEEecCchhhccCC-------CCCchHHHhhc--CccccCCcEEEEEecccccc
Confidence 6788999999998665 67775421111 11322222211 22334467899999998775
No 20
>PRK06321 replicative DNA helicase; Provisional
Probab=46.18 E-value=30 Score=34.86 Aligned_cols=57 Identities=26% Similarity=0.398 Sum_probs=33.0
Q ss_pred HHHHHHhhCCceEEE-EecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcc
Q 022748 222 ITALSDALGVPIRVV-YLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYD 287 (292)
Q Consensus 222 I~ALa~aL~v~I~V~-ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYD 287 (292)
++.||.-|++||-+. .+.|......+......++ -+++ .-+...-.|.+||||.-||
T Consensus 371 LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDL-ReSG--------~IEqdAD~v~~l~R~~~y~ 428 (472)
T PRK06321 371 LKNLARELNIPILCLSQLSRKVEDRANHRPMMSDL-RESG--------SIEQDSDLVMFLLRREYYD 428 (472)
T ss_pred HHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHH-hhcc--------cccccCCEEEEEechhhcC
Confidence 677888899998754 6777643211111122222 1221 2233456899999998775
No 21
>PRK05595 replicative DNA helicase; Provisional
Probab=44.16 E-value=35 Score=33.77 Aligned_cols=57 Identities=28% Similarity=0.466 Sum_probs=33.2
Q ss_pred HHHHHHhhCCceEEE-EecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcc
Q 022748 222 ITALSDALGVPIRVV-YLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYD 287 (292)
Q Consensus 222 I~ALa~aL~v~I~V~-ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYD 287 (292)
++.||+-+++||-+. +|.|+.... .+=.|.-.++.+. +.-+...-.|.+||||.-||
T Consensus 343 LK~lAke~~i~vi~lsQLnR~~e~r-------~~~rP~lsdlr~S--g~Ieq~AD~vl~l~r~~~~~ 400 (444)
T PRK05595 343 IKALAKEMECPVIALSQLSRAPEQR-------ADHRPMLSDLRES--GSIEQDADVVMFLYRDEYYN 400 (444)
T ss_pred HHHHHHHhCCeEEEeeccCcchhcc-------CCCCCchhhhhhh--cccccCCCEEEEEecccccc
Confidence 678899999998765 577654211 1111322222211 12233456899999998875
No 22
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=43.45 E-value=38 Score=33.11 Aligned_cols=58 Identities=29% Similarity=0.431 Sum_probs=33.2
Q ss_pred HHHHHHHhhCCceEEE-EecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcc
Q 022748 221 HITALSDALGVPIRVV-YLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYD 287 (292)
Q Consensus 221 ~I~ALa~aL~v~I~V~-ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYD 287 (292)
.++.||+-+++||-+. .+.|......+......++ -+++ .-+...-.|.+||||.-||
T Consensus 335 ~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdl-r~Sg--------~Ieq~AD~v~~l~R~~~~~ 393 (421)
T TIGR03600 335 GLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDL-RDSG--------AIEQDADVIGLIHREGYYD 393 (421)
T ss_pred HHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHH-hhcC--------CccccCcEEEEeccccccC
Confidence 5688999999999776 4555432111111111222 1111 1223456899999999886
No 23
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.91 E-value=94 Score=33.90 Aligned_cols=42 Identities=26% Similarity=0.509 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCC-------chhHHHHHHHHHHHHHHHhcC
Q 022748 107 VDRIKAKVEECRRTLQSLGHA-------DFTFEDFFALFLEQLDNVLQG 148 (292)
Q Consensus 107 ~~r~~~~i~~~~~~l~~~g~~-------~~~~edf~~~f~~~l~~i~~~ 148 (292)
+.++-..++.....|....|+ +|.+.+|+|.++|+++..+.+
T Consensus 611 ls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~ 659 (877)
T COG0525 611 LSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYG 659 (877)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcC
Confidence 456666666777778777776 477789999999999976554
No 24
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.76 E-value=84 Score=26.70 Aligned_cols=62 Identities=16% Similarity=0.337 Sum_probs=45.9
Q ss_pred ccCCCCCCC-hHHHHHHHHHHHHHHhhcCCccccCCChhHHHHhhccCChHHHHHHHHHHhhccccccc
Q 022748 12 EFDDWSNFE-DEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRT 79 (292)
Q Consensus 12 ~~~~~~~~~-d~~~~~q~~~i~~e~~~~~plVg~~~~~~~L~~eY~~~~~~~~~Ki~~L~~~y~~~R~v 79 (292)
..|.|--.| -||+++.+-.+-+++..+.|+= ..+++||.++.-.|+.+..++.++|+.=|+.
T Consensus 91 s~EnWkP~T~teqVlqaLi~liN~P~pe~plr------~dlA~ey~~d~~kF~K~Aee~tkK~~e~rp~ 153 (153)
T KOG0422|consen 91 SAENWKPATRTEQVLQALIALINDPEPEHPLR------IDLAEEYIKDPKKFVKNAEEFTKKYSEKRPE 153 (153)
T ss_pred ecccccCcccHHHHHHHHHHHhcCCCccccch------hhHHHHHHHCHHHHHHhHHHHHHHhcCcCCC
Confidence 456776665 7777776666666666666553 3689999876567999999999999987763
No 25
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=32.63 E-value=1.4e+02 Score=21.51 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHH
Q 022748 130 TFEDFFALFLEQLDN 144 (292)
Q Consensus 130 ~~edf~~~f~~~l~~ 144 (292)
.++||.+..++.|..
T Consensus 4 P~~DFr~SM~EMI~~ 18 (59)
T PF04844_consen 4 PYEDFRESMVEMIEE 18 (59)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999888888764
No 26
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=31.73 E-value=37 Score=30.57 Aligned_cols=13 Identities=38% Similarity=0.864 Sum_probs=11.5
Q ss_pred HHHHhhCCceEEE
Q 022748 224 ALSDALGVPIRVV 236 (292)
Q Consensus 224 ALa~aL~v~I~V~ 236 (292)
.||+|+|+||+.+
T Consensus 146 glarafgipvrcy 158 (292)
T KOG0662|consen 146 GLARAFGIPVRCY 158 (292)
T ss_pred chhhhcCCceEee
Confidence 3899999999985
No 27
>PF02372 IL15: Interleukin 15; InterPro: IPR003443 Interleukins (IL) are a group of cytokines that play an important role in the immune system. They modulate inflammation and immunity by regulating growth, mobility and differentiation of lymphoid and other cells. Interleukin-15 (IL-15) has a variety of biological functions, including stimulation and maintenance of cellular immune responses []. It is required for division of CD8+ T cells of memory phenotype, a process that is increased by inhibition of IL-2 []. The numbers of CD8+ memory T cells in animals may, therefore, be controlled by a balance between IL-15 and -2. ; GO: 0005126 cytokine receptor binding, 0006955 immune response, 0005576 extracellular region; PDB: 2PSM_A 3TGX_N 2OQP_A 2Z3R_O 2Z3Q_C 2XQB_A.
Probab=30.25 E-value=2.6e+02 Score=23.29 Aligned_cols=69 Identities=22% Similarity=0.298 Sum_probs=43.0
Q ss_pred ccccCCcchhHHHHHHHHHH---HHcc-CCHH-HHHHHHHHHHHHHHHHHH--------CC------CCchhHHHHHHHH
Q 022748 78 RTRGDGNCFFRSFMFSYLEH---ILAS-QDQA-EVDRIKAKVEECRRTLQS--------LG------HADFTFEDFFALF 138 (292)
Q Consensus 78 ~vRGDGNCFYRAf~F~ylE~---Ll~~-~d~~-e~~r~~~~i~~~~~~l~~--------~g------~~~~~~edf~~~f 138 (292)
+..-+.||-..|+--=.+|. +-.. .+.. ..+.+...+...+..|.. .| |++-.+.+|++.|
T Consensus 47 p~d~~~~C~~sal~CF~~El~vvl~E~~~~~~~~~~~i~~~i~~~~~~l~~~~~~~~~~~~C~~CE~yeeK~~~eFL~~~ 126 (135)
T PF02372_consen 47 PTDVKPNCKVSALKCFQKELKVVLKESNIDNSEINETIENLIKQINRNLSSTKNKNTTESGCKECESYEEKNFKEFLQSF 126 (135)
T ss_dssp -SS--GGGHHHHHHHHHHHHHHHHHHCSTCHHHHHHHHHHHHHHHHHHHHC--SSS-STTSS--GGGSEEEEHHHHHHHH
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhcchhhccCCCCCCCCChhhhhhcCHHHHHHHH
Confidence 45555689999998777777 3322 1332 235555566666677765 22 2344678899999
Q ss_pred HHHHHHHh
Q 022748 139 LEQLDNVL 146 (292)
Q Consensus 139 ~~~l~~i~ 146 (292)
..+|++++
T Consensus 127 ~~llQk~i 134 (135)
T PF02372_consen 127 KSLLQKFI 134 (135)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
No 28
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.11 E-value=14 Score=28.22 Aligned_cols=45 Identities=27% Similarity=0.557 Sum_probs=34.7
Q ss_pred ccccccccCCCcccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEec
Q 022748 188 EFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLD 239 (292)
Q Consensus 188 d~y~~Fi~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ylD 239 (292)
..|..||.- ++.++++.|.. .|-+-.+|+++.-..++|++|--+.
T Consensus 23 ~Yyd~fi~~-GgDDvqQL~~~------~e~eF~eim~lvGM~sKPLHVrRlq 67 (82)
T PF04904_consen 23 QYYDTFIAQ-GGDDVQQLCEA------GEEEFLEIMALVGMASKPLHVRRLQ 67 (82)
T ss_pred HHHHHHHHH-cChhHHHHHhc------ChHHHHHHHHHhCccCccHHHHHHH
Confidence 468888854 34679999984 3567899999999999999885443
No 29
>PRK05748 replicative DNA helicase; Provisional
Probab=27.22 E-value=74 Score=31.47 Aligned_cols=58 Identities=28% Similarity=0.421 Sum_probs=31.7
Q ss_pred HHHHHHHhhCCceEEE-EecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcc
Q 022748 221 HITALSDALGVPIRVV-YLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYD 287 (292)
Q Consensus 221 ~I~ALa~aL~v~I~V~-ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYD 287 (292)
.++.||+-|++||-+. .+.|+............++ -+++ .-+...-.|.+||||.-||
T Consensus 346 ~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdl-r~Sg--------~Ieq~AD~v~~l~r~~~~~ 404 (448)
T PRK05748 346 SLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDI-RESG--------SIEQDADIVAFLYRDDYYD 404 (448)
T ss_pred HHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHH-Hhhc--------chhcCCCEEEEEecccccC
Confidence 6788899999998776 5666431111111111111 1111 1123346788999998774
No 30
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=24.45 E-value=1.1e+02 Score=29.91 Aligned_cols=58 Identities=28% Similarity=0.434 Sum_probs=31.1
Q ss_pred HHHHHHHhhCCceEEE-EecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcc
Q 022748 221 HITALSDALGVPIRVV-YLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYD 287 (292)
Q Consensus 221 ~I~ALa~aL~v~I~V~-ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYD 287 (292)
.++.||+-+++||-+. .+.|......+......++ -+++ .-+...-.|.+||||..||
T Consensus 336 ~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdl-r~Sg--------~ieq~aD~vi~l~r~~~~~ 394 (434)
T TIGR00665 336 SLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDL-RESG--------SIEQDADIVMFLYRDEYYN 394 (434)
T ss_pred HHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHH-hhcc--------chhhcCCEEEEeccccccC
Confidence 4678889999999776 4565432111111122222 1111 1122345788899988774
No 31
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=24.00 E-value=3.1e+02 Score=30.24 Aligned_cols=48 Identities=23% Similarity=0.334 Sum_probs=32.1
Q ss_pred Hhccccccccccc---CCCcc-----cHHHHhhhh-cccccccchHHHHHHHHHhhCC
Q 022748 183 IRKRSEFFEPFIL---GLTNA-----TVEQFCKSS-VEPMGEESDHVHITALSDALGV 231 (292)
Q Consensus 183 i~~n~d~y~~Fi~---~~~~~-----~~~~yC~~~-Vep~~~e~d~v~I~ALa~aL~v 231 (292)
..++.+-+..|+. |+++. =+.+||++. +- ++..-+-+.|+|++.+|..
T Consensus 779 ~~t~~~~~l~FL~Slp~~~g~~AlefVMteW~srqhl~-~g~ye~kv~i~alc~al~~ 835 (1005)
T KOG2274|consen 779 VHTDLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQHLY-FGEYEGKVSIKALCKALQH 835 (1005)
T ss_pred hhCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhhhhh-hhhhhchhhHHHHHHHHHh
Confidence 4456677777774 44332 267999987 44 4444557889999999854
No 32
>PF07004 SHIPPO-rpt: Sperm-tail PG-rich repeat; InterPro: IPR010736 This represents a short conserved region (approximately 30 residues long) that is repeated in several eukaryotic proteins of unknown function. One member of this family is annotated as possibly being related to alpha collagen.
Probab=23.89 E-value=31 Score=20.54 Aligned_cols=7 Identities=43% Similarity=0.909 Sum_probs=5.5
Q ss_pred CCCcccc
Q 022748 283 PGHYDIL 289 (292)
Q Consensus 283 PGHYDIL 289 (292)
||+|++-
T Consensus 4 PG~Y~~~ 10 (37)
T PF07004_consen 4 PGSYNPP 10 (37)
T ss_pred CCccccc
Confidence 7999873
No 33
>PF11505 DUF3216: Protein of unknown function (DUF3216); InterPro: IPR023108 This domain is found in a family of proteins with unknown function and appears to be restricted to the Thermococcaceae. ; PDB: 2HJM_A.
Probab=23.41 E-value=1.9e+02 Score=22.83 Aligned_cols=41 Identities=24% Similarity=0.489 Sum_probs=29.8
Q ss_pred CcchhHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHHHHHHHH
Q 022748 83 GNCFFRSFMFSYLEHILAS----QDQAEVDRIKAKVEECRRTLQS 123 (292)
Q Consensus 83 GNCFYRAf~F~ylE~Ll~~----~d~~e~~r~~~~i~~~~~~l~~ 123 (292)
|+=|-.+-+++++|-|+.+ ++...+..++++|+..+..+..
T Consensus 38 Ge~Fi~vsIlGFlEGiLttLk~K~~deri~~Lle~Vr~~R~ele~ 82 (97)
T PF11505_consen 38 GEEFIKVSILGFLEGILTTLKLKYEDERIGELLEKVRARREELEE 82 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTT---HHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999988653 4566788888888877776653
No 34
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=22.14 E-value=2.8e+02 Score=22.52 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=28.0
Q ss_pred HHHhhcccccc-cccCCcchhHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHCCCCc
Q 022748 68 VLGEQYAAIRR-TRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHAD 128 (292)
Q Consensus 68 ~L~~~y~~~R~-vRGDGNCFYRAf~F~ylE~Ll~~~d~~e~~r~~~~i~~~~~~l~~~g~~~ 128 (292)
.|.+...++-- --+.|+|-|+.--+ +...++..++..|.++|.++
T Consensus 48 Af~~GADGV~V~gC~~g~Ch~~~Gn~----------------~a~~Rv~~~k~~L~~~Gi~~ 93 (124)
T PF02662_consen 48 AFEKGADGVLVAGCHPGDCHYREGNY----------------RAEKRVERLKKLLEELGIEP 93 (124)
T ss_pred HHHcCCCEEEEeCCCCCCCCcchhhH----------------HHHHHHHHHHHHHHHcCCCh
Confidence 35555555543 44568998763211 33446677888999999983
No 35
>COG2733 Predicted membrane protein [Function unknown]
Probab=21.86 E-value=5e+02 Score=25.88 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHHHHccCCHH
Q 022748 85 CFFRSFMFSYLEHILASQDQA 105 (292)
Q Consensus 85 CFYRAf~F~ylE~Ll~~~d~~ 105 (292)
-||| |.|.|...|-. ||.
T Consensus 256 ~~~R-~~~~~i~~L~~--Dp~ 273 (415)
T COG2733 256 DFDR-FLFDLIDDLYH--DPG 273 (415)
T ss_pred HHHH-HHHHHHHHHhc--CHH
Confidence 4899 99999999987 553
No 36
>KOG1556 consensus 26S proteasome regulatory complex, subunit RPN8/PSMD7 [Posttranslational modification, protein turnover, chaperones]
Probab=21.20 E-value=3.6e+02 Score=25.27 Aligned_cols=138 Identities=23% Similarity=0.332 Sum_probs=71.1
Q ss_pred cCCcccc-CCChhHHHHhhccCChH---HHHHHHHH---HhhcccccccccCCcchhHHH-------------HHHHHHH
Q 022748 38 KVPFVAD-KEPLSALASEYQSGSPI---LLEKIKVL---GEQYAAIRRTRGDGNCFFRSF-------------MFSYLEH 97 (292)
Q Consensus 38 ~~plVg~-~~~~~~L~~eY~~~~~~---~~~Ki~~L---~~~y~~~R~vRGDGNCFYRAf-------------~F~ylE~ 97 (292)
+||-+.+ -..+..|.+.|-.+ |+ +-.|-+.+ .+.|-.+-.|.-||.---+-| -.| .|+
T Consensus 98 TGPkl~~nDl~In~l~k~y~pn-pvLvIIdvkpk~~gLPT~AY~aVeev~dDgt~t~ktF~Hvps~I~AeEAEEvG-VEH 175 (309)
T KOG1556|consen 98 TGPKLRENDLDINELLKRYVPN-PVLVIIDVKPKELGLPTEAYIAVEEVKDDGTPTSKTFVHVPSEIEAEEAEEVG-VEH 175 (309)
T ss_pred cCCccccchhhHHHHHhhcCCC-ceEEEEecccccCCCCchheeeeeeeecCCCCccceeEecCcccchhHHHHhh-HHH
Confidence 5664443 36788899999653 53 22333333 366999999999997522211 122 577
Q ss_pred HHccCCHHHHHHHHHHH--------------HHHHHHHHHCCCCchhHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhh
Q 022748 98 ILASQDQAEVDRIKAKV--------------EECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSR 163 (292)
Q Consensus 98 Ll~~~d~~e~~r~~~~i--------------~~~~~~l~~~g~~~~~~edf~~~f~~~l~~i~~~~~~~~~~~~L~~~fn 163 (292)
||+.--...+..+-.+| ..++..|..+.=.+..+. .+.+.+++++.+-.+ .++..++..+|+
T Consensus 176 LlRDikd~t~gtla~rit~ql~sLkgl~~~L~eI~~YL~~Vi~g~lpiN---h~Il~~lQdvfNllP-~l~~~~~~~a~~ 251 (309)
T KOG1556|consen 176 LLRDIKDTTVGTLATRITNQLMSLKGLQSRLREIRSYLDKVIDGKLPIN---HEILYQLQDVFNLLP-NLTRNELVKAFN 251 (309)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---HHHHHHHHHHHhhCc-cccchhhhhhhc
Confidence 77621111122222222 222222222211111111 134456666655433 355678888884
Q ss_pred ----hccCchHHHHHHHHHHHH
Q 022748 164 ----DQSVSDYVVMFFRFVTSG 181 (292)
Q Consensus 164 ----d~~~s~~iv~~lRllts~ 181 (292)
|+...-|+-...|.+.|-
T Consensus 252 vktndql~~iY~sslvrsViAl 273 (309)
T KOG1556|consen 252 VKTNDQLMVIYLSSLVRSVIAL 273 (309)
T ss_pred cccCceeeeeeHHHHHHHHHHH
Confidence 666666776777776653
No 37
>PRK06922 hypothetical protein; Provisional
Probab=20.47 E-value=3.1e+02 Score=29.19 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=36.9
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-hhccCchHHHHHHHHHHHHHHhc
Q 022748 127 ADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRS-RDQSVSDYVVMFFRFVTSGEIRK 185 (292)
Q Consensus 127 ~~~~~edf~~~f~~~l~~i~~~~~~~~~~~~L~~~f-nd~~~s~~iv~~lRllts~~i~~ 185 (292)
.+|+||+|+..|+=..+.+-......++.+-|++.. -|.....++.+|-..+...|++.
T Consensus 261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (677)
T PRK06922 261 HALSFEDIWTVFVMLKNEIGTRKVQHIHFEKLMQQLHYDFKGEKKDNVYRKRVIEKYLRE 320 (677)
T ss_pred hhcCHHHHHHHHHHHHHhcCccccceeehHHHHHHHHHhhcCcchhhHHHHHHHHHHHHH
Confidence 468899999998665555533333446777777654 45554555555555566667664
Done!