Query 022748
Match_columns 292
No_of_seqs 159 out of 388
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 10:29:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dhi_B Ubiquitin thioesterase 100.0 5.4E-83 1.9E-87 588.0 21.1 266 5-292 4-274 (284)
2 2zfy_A Ubiquitin thioesterase 100.0 2.1E-73 7.2E-78 515.0 21.7 234 32-291 1-234 (234)
3 4ddg_A Ubiquitin-conjugating e 100.0 1.2E-72 4.1E-77 545.4 24.2 247 19-291 153-399 (399)
4 1tff_A Ubiquitin thiolesterase 100.0 6.9E-72 2.4E-76 505.0 21.4 229 36-292 2-231 (234)
5 3by4_A OTU1, ubiquitin thioest 99.8 9.4E-21 3.2E-25 168.4 8.4 92 174-291 48-139 (212)
6 3pfy_A OTU domain-containing p 99.7 1.8E-17 6.1E-22 144.3 9.7 93 174-291 88-181 (185)
7 3phx_A RNA-directed RNA polyme 99.7 4.3E-17 1.5E-21 142.0 11.2 94 173-291 65-159 (185)
8 3phu_A RNA-directed RNA polyme 99.7 2.1E-16 7.2E-21 140.8 9.1 94 173-291 65-159 (219)
9 3fx7_A Putative uncharacterize 82.2 11 0.00036 28.8 8.9 44 102-145 6-61 (94)
10 1jmu_A Protein MU-1; protein-p 35.3 9.5 0.00033 24.4 0.4 9 78-86 11-19 (41)
11 4a1f_A DNAB helicase, replicat 32.0 19 0.00065 33.2 2.0 58 221-287 187-245 (338)
12 3ox7_P MH027; urokinase-type p 31.8 8.2 0.00028 21.2 -0.3 10 81-90 4-13 (23)
13 1rw2_A ATP-dependent DNA helic 25.0 2.7E+02 0.0094 22.4 9.4 42 96-138 63-104 (152)
14 3dkb_A Tumor necrosis factor, 24.6 25 0.00086 33.1 1.4 14 78-91 116-129 (390)
15 2hjm_A Hypothetical protein PF 21.9 1.2E+02 0.0039 23.0 4.3 41 83-123 44-88 (103)
16 3zrh_A Ubiquitin thioesterase 20.3 1.3E+02 0.0045 28.7 5.4 25 212-236 273-297 (454)
No 1
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=100.00 E-value=5.4e-83 Score=588.01 Aligned_cols=266 Identities=35% Similarity=0.653 Sum_probs=219.3
Q ss_pred ccccCCcccCCCCCC-ChHHHHHHHHHHH--HHHhhcCCccccCCChhHHHHhhccCC-hHHHHHHHHHHhhcccccccc
Q 022748 5 EKCGASCEFDDWSNF-EDEDIMQQQSDIK--AEEAQKVPFVADKEPLSALASEYQSGS-PILLEKIKVLGEQYAAIRRTR 80 (292)
Q Consensus 5 ~~~~~~~~~~~~~~~-~d~~~~~q~~~i~--~e~~~~~plVg~~~~~~~L~~eY~~~~-~~~~~Ki~~L~~~y~~~R~vR 80 (292)
||-.++++.+..++. +||+|++|+++|+ +|++.++||||+++|+++|++||++++ |+|++||++|+++|+++|+||
T Consensus 4 ~~~~~~~~~~~~~~~~~de~i~~q~~~i~~~~e~a~~~PLVg~~~~~~~L~~EYa~~~~~~~~~Ki~~L~~~Y~~~R~~R 83 (284)
T 4dhi_B 4 EPQKSDDNGQAAEAVVTDDEIVLQDQQLKTIEDEQKSVPLVATLAPFSILCAEYDNETSAAFLSKATELSEVYGEIRYIR 83 (284)
T ss_dssp ----------------------------------CTTCCSBCCCEEGGGGGGCTTSCCSHHHHHHHHHHHTTEEEEECBC
T ss_pred CcccCCccccccCCcCcHHHHHHHHHHhHhhhhhhccCCCcCCcCcHHHHHHHhccCchHHHHHHHHHHHHhccceeeec
Confidence 556677788888887 5999999999999 999999999999999999999999888 899999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 022748 81 GDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVV 160 (292)
Q Consensus 81 GDGNCFYRAf~F~ylE~Ll~~~d~~e~~r~~~~i~~~~~~l~~~g~~~~~~edf~~~f~~~l~~i~~~~~~~~~~~~L~~ 160 (292)
||||||||||+|+|||+|+. +++++.||++++++++..|.++||++++++||+++|+++|+++.++.. +.+.|++
T Consensus 84 GDGNCFyRAf~F~ylE~Ll~--~~~e~~r~~~~~~~s~~~L~~~G~~~~~~eDF~d~f~ell~~i~~~~~---~~~~L~~ 158 (284)
T 4dhi_B 84 GDGNCFYRAILVGLIEIMLK--DRARLEKFIASSRDWTRTLVELGFPDWTCTDFCDFFIEFLEKIHSGVH---TEEAVYT 158 (284)
T ss_dssp CSTTHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCS---CHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHCCCchhhHHHHHHHHHHHHHHHhcCCC---cHHHHHH
Confidence 99999999999999999998 778999999999999999999999999999999999999999976542 4688999
Q ss_pred HhhhccCchHHHHHHHHHHHHHHhcccccccccccCCCcccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEecC
Q 022748 161 RSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDR 240 (292)
Q Consensus 161 ~fnd~~~s~~iv~~lRllts~~i~~n~d~y~~Fi~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ylD~ 240 (292)
+|||+..|++||+|||++||+||++|+++|+||+.+. .++++||+++|+||++|||||+|+|||++|++||+|+|+||
T Consensus 159 ~Fnd~~~S~~iv~~LRllts~yi~~~~d~f~pFi~~~--~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDr 236 (284)
T 4dhi_B 159 ILNDDGSANYILMFFRLITSAFLKQNSEEYAPFIDEG--MTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDR 236 (284)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSCTT--CCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSG
T ss_pred HhcCcccchHHHHHHHHHHHHHHHHCHHHHHhhcCCC--CCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecC
Confidence 9999999999999999999999999999999999873 68999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccc-CCCCCCCCCCCCCCCCCCCCCeEEEEecCCCccccccC
Q 022748 241 SSCDSGGASVNHHD-FIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILYPK 292 (292)
Q Consensus 241 ~~~~~~~~~v~~~~-f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYDILY~~ 292 (292)
++ |.+|++|+ | |+.. ....|.|+|||||||||||||+
T Consensus 237 s~----g~~v~~h~~f-p~~~----------~~~~p~I~LLYrpgHYDILY~~ 274 (284)
T 4dhi_B 237 TA----APNGGWHYDI-PSDD----------QQIAPEITLLYRPGHYDVIYKK 274 (284)
T ss_dssp GG----CTTSSSEEEE-SCCC----------SCCCCSEEEEEETTEEEEEEEC
T ss_pred CC----CCCCcccccC-CCCC----------CCCCCEEEEeecCCCccccccC
Confidence 87 56789998 9 7631 1236899999999999999996
No 2
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=100.00 E-value=2.1e-73 Score=515.03 Aligned_cols=234 Identities=46% Similarity=0.769 Sum_probs=212.0
Q ss_pred HHHHhhcCCccccCCChhHHHHhhccCChHHHHHHHHHHhhcccccccccCCcchhHHHHHHHHHHHHccCCHHHHHHHH
Q 022748 32 KAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIK 111 (292)
Q Consensus 32 ~~e~~~~~plVg~~~~~~~L~~eY~~~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~Ll~~~d~~e~~r~~ 111 (292)
++|+++++||||+++|+++|.+||++++|+|++|++.|.++|+++|+||||||||||||+|+|||+|+. ++++++||+
T Consensus 1 ~~e~~~~~plv~~~~~~~~L~~eY~~~~~~~~~K~~~L~~~y~~~R~vRgDGNCFyRaf~f~ylE~ll~--~~~e~~r~~ 78 (234)
T 2zfy_A 1 GSEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLD--DSKELQRFK 78 (234)
T ss_dssp -------CCSBCCCEEGGGGGGGSCTTCHHHHHHHHHHTTTCCEEECBCCSSCHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred CchhhhcCCCCCCccCHHHHHHHHccCCHHHHHHHHHHHHhccceeeccCCccHHHHHHHHHHHHHHHc--CHHHHHHHH
Confidence 357788999999999999999999988999999999999999999999999999999999999999996 778999999
Q ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhhccCchHHHHHHHHHHHHHHhccccccc
Q 022748 112 AKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFE 191 (292)
Q Consensus 112 ~~i~~~~~~l~~~g~~~~~~edf~~~f~~~l~~i~~~~~~~~~~~~L~~~fnd~~~s~~iv~~lRllts~~i~~n~d~y~ 191 (292)
+++.+++..|.++||++++++||+++|+++|+++.++ .+.+.|+++|||+..++++|++||++||+||++|+++|+
T Consensus 79 ~~~~~~~~~l~~~g~~~~~~edf~~~f~~ll~~i~~~----~~~~~L~~~fndq~~s~~~v~~lR~lta~yi~~~~d~f~ 154 (234)
T 2zfy_A 79 AVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQ----TSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFE 154 (234)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHG
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHcC----CCHHHHHHHHHhhccchHHHHHHHHHHHHHHHHCHHHHh
Confidence 9999999999999999999999999999999999653 367899999999999999999999999999999999999
Q ss_pred ccccCCCcccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCC
Q 022748 192 PFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTE 271 (292)
Q Consensus 192 ~Fi~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~ 271 (292)
||+.+ +.++++||+++|+||++||||++|+|||++|++||+|+|+|+++ +..+++|.|++.
T Consensus 155 pFi~~--~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~----~~~v~~~~f~~~------------- 215 (234)
T 2zfy_A 155 HFIEG--GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE----GGTTNPHIFPEG------------- 215 (234)
T ss_dssp GGCCS--SCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CC----SSCCEEEEESTT-------------
T ss_pred cccCC--CCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCC----CCcccceeCCCC-------------
Confidence 99976 35899999999999999999999999999999999999999987 346888888432
Q ss_pred CCCCeEEEEecCCCcccccc
Q 022748 272 TTIPFITLLYRPGHYDILYP 291 (292)
Q Consensus 272 ~~~p~v~LLyrPGHYDILY~ 291 (292)
..|.|+|||||||||||||
T Consensus 216 -~~p~I~LlY~pgHYdiLy~ 234 (234)
T 2zfy_A 216 -SEPKVYLLYRPGHYDILYK 234 (234)
T ss_dssp -CCCSEEEEEETTEEEEEEC
T ss_pred -CCCeEEEEECCCCcccCCC
Confidence 2588999999999999998
No 3
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=1.2e-72 Score=545.37 Aligned_cols=247 Identities=46% Similarity=0.756 Sum_probs=232.4
Q ss_pred CChHHHHHHHHHHHHHHhhcCCccccCCChhHHHHhhccCChHHHHHHHHHHhhcccccccccCCcchhHHHHHHHHHHH
Q 022748 19 FEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHI 98 (292)
Q Consensus 19 ~~d~~~~~q~~~i~~e~~~~~plVg~~~~~~~L~~eY~~~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~L 98 (292)
.+||+|++|+++|++|+++++||||+++|+++|++||++++|+|++|++.|.++|+++|+||||||||||||+|+|||+|
T Consensus 153 ~~De~i~~q~~~I~~e~~~~~plv~~~~~~~~L~~eY~~~~~~~~~k~~~L~~~y~~~R~vrgDGNCFYRAf~f~ylE~l 232 (399)
T 4ddg_A 153 AYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNSFYRAFGFSHLEAL 232 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSBCCCEEGGGHHHHSCTTCHHHHHHHHHHHHHCSEEECBCCSSCHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHhhhccCCCCcCCcCCHHHHHHHhhccChHHHHHHHHHHhhcCeeeeecCCCchHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhhccCchHHHHHHHHH
Q 022748 99 LASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFV 178 (292)
Q Consensus 99 l~~~d~~e~~r~~~~i~~~~~~l~~~g~~~~~~edf~~~f~~~l~~i~~~~~~~~~~~~L~~~fnd~~~s~~iv~~lRll 178 (292)
+. +.++..||++.++.++..+..+||++++++||+++|+++|+++.++ .+.++|+++|||+..|+++|+|||++
T Consensus 233 l~--~~~e~~r~~~~~~~~~~~l~~~g~~~~~~edf~~~f~~ll~~i~~~----~~~~~L~~~fnd~~~s~~iv~~lRll 306 (399)
T 4ddg_A 233 LD--DSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQ----TSVADLLASFNDQSTSDYLVVYLRLL 306 (399)
T ss_dssp TT--CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHSC----CCHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred Hh--ChHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHcc----CCHHHHHHHHhcccchhhHHHHHHHH
Confidence 97 6789999999999999999999999999999999999999998653 46789999999999999999999999
Q ss_pred HHHHHhcccccccccccCCCcccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEecCCCCCCCCCccccccCCCC
Q 022748 179 TSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPT 258 (292)
Q Consensus 179 ts~~i~~n~d~y~~Fi~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ylD~~~~~~~~~~v~~~~f~p~ 258 (292)
||+||+.|+++|.||+++ +.+|++||+++|+||++||||++|+|||+||+++|+|+|+|++. +..|++|+| |+
T Consensus 307 ts~~i~~~~d~f~pFi~~--~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~----~~~v~~~~~-~~ 379 (399)
T 4ddg_A 307 TSGYLQRESKFFEHFIEG--GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE----GGTTNPHIF-PE 379 (399)
T ss_dssp HHHHHHHTHHHHGGGSSS--SCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCS----SSCCCEEET-TT
T ss_pred HHHHHHHCHHHHhcccCC--CCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCC----CCccceeeC-CC
Confidence 999999999999999976 36899999999999999999999999999999999999999987 456888988 54
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEecCCCcccccc
Q 022748 259 PGDCPNATSGSTETTIPFITLLYRPGHYDILYP 291 (292)
Q Consensus 259 ~~~~~~~~~~~~~~~~p~v~LLyrPGHYDILY~ 291 (292)
. ..|.|+|||||||||||||
T Consensus 380 ~-------------~~~~I~LLYrPgHYDiLY~ 399 (399)
T 4ddg_A 380 G-------------SEPKVYLLYRPGHYDILYK 399 (399)
T ss_dssp T-------------CCCCCEEEEETBEEEEEEC
T ss_pred C-------------CCCEEEEEEcCCccccCCC
Confidence 1 2689999999999999997
No 4
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=100.00 E-value=6.9e-72 Score=505.00 Aligned_cols=229 Identities=35% Similarity=0.645 Sum_probs=205.9
Q ss_pred hhcC-CccccCCChhHHHHhhccCChHHHHHHHHHHhhcccccccccCCcchhHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 022748 36 AQKV-PFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKV 114 (292)
Q Consensus 36 ~~~~-plVg~~~~~~~L~~eY~~~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~Ll~~~d~~e~~r~~~~i 114 (292)
+++. ||||+++|+++|.+||+ ++|+|++|++.|.++|+++|+||||||||||||+|+|||+|+. +.++++||++.+
T Consensus 2 ~~~~~plv~~~~~~~~l~~eY~-~~~~~~~K~~~L~~~y~~~R~vRgDGNCFYRAf~f~ylE~ll~--~~~e~~r~~~~~ 78 (234)
T 1tff_A 2 SETSFNLISEKCDILSILRDHP-ENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLG--KSREIFKFKERV 78 (234)
T ss_dssp -----CCBCCCBCTTHHHHSCS-GGGGGHHHHHHHHHHEEEEECBCCSSCHHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred CCCCCCCcCCcCCHHHHHHHhc-CCHHHHHHHHHHHHhhhheeecCCCccHHHHHHHHHHHHHHhh--CHHHHHHHHHHH
Confidence 4566 99999999999999998 6799999999999999999999999999999999999999996 778999999999
Q ss_pred HHHHHHHHHCCCCchhHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhhccCchHHHHHHHHHHHHHHhcccccccccc
Q 022748 115 EECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNEFSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFI 194 (292)
Q Consensus 115 ~~~~~~l~~~g~~~~~~edf~~~f~~~l~~i~~~~~~~~~~~~L~~~fnd~~~s~~iv~~lRllts~~i~~n~d~y~~Fi 194 (292)
++++..|.++||++++++||+++|+++|+++.++. +.+.|+++|||+..|+++|++||++||+||++|+|+|+||+
T Consensus 79 ~~~~~~l~~~g~~~~~~edF~~~f~~ll~~i~~~~----~~~~L~~~fnd~~~s~~iv~~lR~lta~~i~~~~d~f~pFi 154 (234)
T 1tff_A 79 LQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDG----SVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFI 154 (234)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTC----CHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGS
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcCC----CHHHHHHHHhcccchhhHHHHHHHHHHHHHHHCHHHHhhhh
Confidence 99999999999999999999999999999996543 67899999999999999999999999999999999999999
Q ss_pred cCCCcccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCC
Q 022748 195 LGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTI 274 (292)
Q Consensus 195 ~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~ 274 (292)
.+ +.++++||+++|+||++||||++|+|||++|++||+|+|+|+++ ..+++|.|++. ..
T Consensus 155 ~~--~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~-----~~~~~~~~~~~--------------~~ 213 (234)
T 1tff_A 155 DE--EMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-----TALNHHVFPEA--------------AT 213 (234)
T ss_dssp CT--TSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC------------CCCCCCC--------------SS
T ss_pred cC--CCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCC-----CccccccCCCC--------------CC
Confidence 76 35899999999999999999999999999999999999999986 24788888432 26
Q ss_pred CeEEEEecCCCccccccC
Q 022748 275 PFITLLYRPGHYDILYPK 292 (292)
Q Consensus 275 p~v~LLyrPGHYDILY~~ 292 (292)
|.|+|||||||||||||+
T Consensus 214 ~~I~LlY~pgHYdily~~ 231 (234)
T 1tff_A 214 PSVYLLYKTSHYNILYAA 231 (234)
T ss_dssp CSEEEEEETTEEEEEEEC
T ss_pred CeEEEEECCCCceecccC
Confidence 899999999999999995
No 5
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.82 E-value=9.4e-21 Score=168.40 Aligned_cols=92 Identities=26% Similarity=0.292 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcccccccccccCCCcccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEecCCCCCCCCCccccc
Q 022748 174 FFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHH 253 (292)
Q Consensus 174 ~lRllts~~i~~n~d~y~~Fi~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ylD~~~~~~~~~~v~~~ 253 (292)
.+|.+++.||+.|++.|.+|+.+ .++++||.+ ++.++.||||++|+|||++|++||.|+..+..+ .+
T Consensus 48 ~lR~~vv~yi~~n~d~f~e~~~~---~~~e~Y~~~-m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~---------~~ 114 (212)
T 3by4_A 48 DLREMVSKEVLNNPVKFNDAILD---KPNKDYAQW-ILKMESWGGAIEIGIISDALAVAIYVVDIDAVK---------IE 114 (212)
T ss_dssp HHHHHHHHHHHHCTTTTCHHHHT---SCHHHHHHH-TTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTE---------EE
T ss_pred HHHHHHHHHHHHCHHHHhhhhcC---CCHHHHHHH-hcCCCEEccHHHHHHHHHHHCCCEEEEECCCCC---------eE
Confidence 58999999999999999877765 579999996 788999999999999999999999998765321 23
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcccccc
Q 022748 254 DFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILYP 291 (292)
Q Consensus 254 ~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYDILY~ 291 (292)
.|.++. ..+.|+|+|.++|||.||+
T Consensus 115 ~~~~~~-------------~~~~I~L~Y~g~HYdsl~~ 139 (212)
T 3by4_A 115 KFNEDK-------------FDNYILILFNGIHYDSLTM 139 (212)
T ss_dssp EESTTT-------------CSEEEEEEECSSCEEEEEE
T ss_pred EeCCCC-------------CCCeEEEEEcCCcceEEec
Confidence 464431 2467999999999999985
No 6
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.71 E-value=1.8e-17 Score=144.33 Aligned_cols=93 Identities=15% Similarity=0.288 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcccccccccccCCCcccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEecCCCCCCCCCccccc
Q 022748 174 FFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHH 253 (292)
Q Consensus 174 ~lRllts~~i~~n~d~y~~Fi~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ylD~~~~~~~~~~v~~~ 253 (292)
.||..++.||++|++.|.||+.+ ++++||++ +..++.|||+++|+|||++|+++|.|+..+..+ ++.
T Consensus 88 ~LR~~vv~yi~~n~d~f~~Fv~~----~~e~Y~~~-m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~-------i~i- 154 (185)
T 3pfy_A 88 VVRKHCMDYLMKNADYFSNYVTE----DFTTYINR-KRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEP-------INT- 154 (185)
T ss_dssp HHHHHHHHHHHHTHHHHTTCC----------------------CCHHHHHHHHHHHTSCEEEESSCSSC-------SEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----cHHHHHHH-hhCCCccchHHHHHHHHHhhCCcEEEEECCCCC-------eEE-
Confidence 48999999999999999999964 59999995 788999999999999999999999998654322 221
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCeEEEEe-cCCCcccccc
Q 022748 254 DFIPTPGDCPNATSGSTETTIPFITLLY-RPGHYDILYP 291 (292)
Q Consensus 254 ~f~p~~~~~~~~~~~~~~~~~p~v~LLy-rPGHYDILY~ 291 (292)
|.+.. ....+.|+|.| +-+|||-|+.
T Consensus 155 -~~g~~-----------~~~~~~I~L~Y~~~~HYnSv~~ 181 (185)
T 3pfy_A 155 -FHGIH-----------QNEDEPIRVSYHRNIHYNSVVN 181 (185)
T ss_dssp -ECTTS-----------CCTTSCEEEEEETTTEEEEEEC
T ss_pred -ecCcc-----------CCCCCEEEEEECCCCCcccccC
Confidence 21211 01235699999 6799999875
No 7
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.71 E-value=4.3e-17 Score=141.96 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhcccccccccccCCCcccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEecCCCCCCCCCcccc
Q 022748 173 MFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNH 252 (292)
Q Consensus 173 ~~lRllts~~i~~n~d~y~~Fi~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ylD~~~~~~~~~~v~~ 252 (292)
..+|..++.||++|++. |..+ .++++||++ +..++.||||++|.|||++|+++|.|+++|... ..++.
T Consensus 65 ~~LR~~~~~yi~~~~~~---~~~~---~~~~~Y~~~-m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~-----~~~~i 132 (185)
T 3phx_A 65 RLTESAARKYYQEEPEA---RLVG---LSLEDYLKR-MLSDNEWGSTLEASMLAKEMGITIIIWTVAASD-----EVEAG 132 (185)
T ss_dssp HHHHHHHHHHGGGCTTH---HHHC---CCHHHHHHH-HTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CC-----BCCEE
T ss_pred HHHHHHHHHHHHhChHh---hhcC---CCHHHHHHH-hhCCCccCcHHHHHHHHHHHCCcEEEEEecCCC-----CceEE
Confidence 45899999999999988 4433 579999995 677899999999999999999999998877643 12334
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCeEEEEecC-CCcccccc
Q 022748 253 HDFIPTPGDCPNATSGSTETTIPFITLLYRP-GHYDILYP 291 (292)
Q Consensus 253 ~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrP-GHYDILY~ 291 (292)
+.|.++. ..+.|+|+|.. +|||.|.+
T Consensus 133 ~~f~~~~-------------~~~~I~L~Y~g~~HYdsl~~ 159 (185)
T 3phx_A 133 IKFGDGD-------------VFTAVNLLHSGQTHFDALRI 159 (185)
T ss_dssp EEESSCC-------------TTTSEEEEEETTTEEEEEEE
T ss_pred EEcCCCC-------------CCCEEEEEECCCcCchhceE
Confidence 5564431 14579999999 99999875
No 8
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.65 E-value=2.1e-16 Score=140.83 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcccccccccccCCCcccHHHHhhhhcccccccchHHHHHHHHHhhCCceEEEEecCCCCCCCCCcccc
Q 022748 173 MFFRFVTSGEIRKRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNH 252 (292)
Q Consensus 173 ~~lRllts~~i~~n~d~y~~Fi~~~~~~~~~~yC~~~Vep~~~e~d~v~I~ALa~aL~v~I~V~ylD~~~~~~~~~~v~~ 252 (292)
..+|..++.||+.|++. |+.+ .++++||++ +..++.||||++|.|||++|+++|.|++.|... .....
T Consensus 65 ~~LR~~va~yi~~n~d~---~~~~---~~feeY~~~-m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g-----~~~~i 132 (219)
T 3phu_A 65 RLTESAARKYYQEEPEA---RLVG---LSLEDYLKR-MLSDNEWGSTLEASMLAKEMGITIIIWTVAASD-----EVEAG 132 (219)
T ss_dssp HHHHHHHHHHGGGCHHH---HHHC---CCHHHHHHH-HHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSS-----BEEEE
T ss_pred HHHHHHHHHHHHhChhh---hhcC---CCHHHHHHH-hcCCCccCCHHHHHHHHHHhCCCEEEEEecCCC-----CceeE
Confidence 45899999999999988 4433 479999995 667899999999999999999999998887541 12344
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCeEEEEecC-CCcccccc
Q 022748 253 HDFIPTPGDCPNATSGSTETTIPFITLLYRP-GHYDILYP 291 (292)
Q Consensus 253 ~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrP-GHYDILY~ 291 (292)
+.|.++. ..+.|+|+|.. +|||.|++
T Consensus 133 ~~fge~~-------------~~~~I~L~Y~g~~HYdSL~~ 159 (219)
T 3phu_A 133 IKFGDGD-------------VFTAVNLLHSGQTHFDALRI 159 (219)
T ss_dssp EEESSCC-------------TTTSEEEEEETTTEEEEEEE
T ss_pred EEecCCC-------------CCCeEEEEECCCcCchhheE
Confidence 5564431 14579999999 99999876
No 9
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=82.16 E-value=11 Score=28.75 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHHHHHH-----------HHCC-CCchhHHHHHHHHHHHHHHH
Q 022748 102 QDQAEVDRIKAKVEECRRTL-----------QSLG-HADFTFEDFFALFLEQLDNV 145 (292)
Q Consensus 102 ~d~~e~~r~~~~i~~~~~~l-----------~~~g-~~~~~~edf~~~f~~~l~~i 145 (292)
.||.++.+|...+++.+..| ..+| |++-...+|-+.|.++++.+
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l 61 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTF 61 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHH
Confidence 37777776666666555444 4577 88888888887776665543
No 10
>1jmu_A Protein MU-1; protein-protein complex, jelly roll, zinc finger, viral protein; HET: BOG; 2.80A {Reovirus SP} SCOP: e.35.1.1
Probab=35.27 E-value=9.5 Score=24.41 Aligned_cols=9 Identities=56% Similarity=1.066 Sum_probs=7.3
Q ss_pred ccccCCcch
Q 022748 78 RTRGDGNCF 86 (292)
Q Consensus 78 ~vRGDGNCF 86 (292)
.|+||||-|
T Consensus 11 nI~GdGN~F 19 (41)
T 1jmu_A 11 NVTGDGNVF 19 (41)
T ss_dssp CTTSSSCEE
T ss_pred EEeCCCcee
Confidence 578999976
No 11
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=32.00 E-value=19 Score=33.19 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=33.1
Q ss_pred HHHHHHHhhCCceEEE-EecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCcc
Q 022748 221 HITALSDALGVPIRVV-YLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYD 287 (292)
Q Consensus 221 ~I~ALa~aL~v~I~V~-ylD~~~~~~~~~~v~~~~f~p~~~~~~~~~~~~~~~~~p~v~LLyrPGHYD 287 (292)
.+++||+-+++||-+. .+.|+.....+......++ -++ +.-+...-.|.+||||.-|+
T Consensus 187 ~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDL-reS--------g~IeqdAD~Vl~l~R~~~y~ 245 (338)
T 4a1f_A 187 ELKTLARELEIPIIALVQLNRSLENRDDKRPILSDI-KDS--------GGIEQDADIVLFLYRGYIYQ 245 (338)
T ss_dssp HHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGS-EET--------TEECCCCSEEEEEECHHHHH
T ss_pred HHHHHHHHcCCeEEEEEecCccccccccCCCChHhc-ccc--------hhhhhhCcEEEEEecchhcc
Confidence 4688999999999776 5655432111111111122 111 11223456899999998885
No 12
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=31.76 E-value=8.2 Score=21.15 Aligned_cols=10 Identities=40% Similarity=1.029 Sum_probs=8.3
Q ss_pred cCCcchhHHH
Q 022748 81 GDGNCFFRSF 90 (292)
Q Consensus 81 GDGNCFYRAf 90 (292)
.||-|-||++
T Consensus 4 adgacswrgl 13 (23)
T 3ox7_P 4 ADGACSWRGL 13 (26)
T ss_pred cCcccccccc
Confidence 5899999974
No 13
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=24.96 E-value=2.7e+02 Score=22.45 Aligned_cols=42 Identities=12% Similarity=0.250 Sum_probs=23.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Q 022748 96 EHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALF 138 (292)
Q Consensus 96 E~Ll~~~d~~e~~r~~~~i~~~~~~l~~~g~~~~~~edf~~~f 138 (292)
..|+.........+.+++|..++..+...+ ....|.+|...+
T Consensus 63 ~~Ll~~s~~~~y~KA~ecL~~lR~~~i~~~-ep~~yN~Fl~~L 104 (152)
T 1rw2_A 63 EQFLDTNETPYFMKSIDCIRAFREEAIKFS-EEQRFNNFLKAL 104 (152)
T ss_dssp HHHHHSSCSHHHHHHHHHHHHHHHHHHHHT-CSHHHHHHHHHH
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHH
Confidence 334443334566777777777777776664 233455554444
No 14
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=24.61 E-value=25 Score=33.09 Aligned_cols=14 Identities=43% Similarity=0.961 Sum_probs=0.0
Q ss_pred ccccCCcchhHHHH
Q 022748 78 RTRGDGNCFFRSFM 91 (292)
Q Consensus 78 ~vRGDGNCFYRAf~ 91 (292)
.++|||||---|..
T Consensus 116 ~t~GDGnCLLHAvS 129 (390)
T 3dkb_A 116 KTNGDGNCLMHATS 129 (390)
T ss_dssp CCCCSSCHHHHHHH
T ss_pred EecCCCchHHHHHh
No 15
>2hjm_A Hypothetical protein PF1176; singleton protein PF1176, structural genomics, secsg, PSI, P structure initiative; 2.90A {Pyrococcus furiosus}
Probab=21.95 E-value=1.2e+02 Score=23.05 Aligned_cols=41 Identities=20% Similarity=0.509 Sum_probs=33.0
Q ss_pred CcchhHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHHHHHHHH
Q 022748 83 GNCFFRSFMFSYLEHILAS----QDQAEVDRIKAKVEECRRTLQS 123 (292)
Q Consensus 83 GNCFYRAf~F~ylE~Ll~~----~d~~e~~r~~~~i~~~~~~l~~ 123 (292)
|.=|-++-+++++|-||.+ .+...+.+++++|+..+..+..
T Consensus 44 Ge~Fv~vsIlGFlEGiLttLK~Ky~de~i~~Lle~V~~~R~ele~ 88 (103)
T 2hjm_A 44 GEAFAKASIYGFLEGILTTLKMKYSNEKIETLLNEVKTAREETEA 88 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999988753 4566888999999888777654
No 16
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=20.27 E-value=1.3e+02 Score=28.75 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.6
Q ss_pred cccccchHHHHHHHHHhhCCceEEE
Q 022748 212 PMGEESDHVHITALSDALGVPIRVV 236 (292)
Q Consensus 212 p~~~e~d~v~I~ALa~aL~v~I~V~ 236 (292)
|++.--.+++|=+||++|.-||-|+
T Consensus 273 ~Pg~sLEeiHIFvLAhVLRRPIIV~ 297 (454)
T 3zrh_A 273 QPGASLEQTHIFVLAHILRRPIIVY 297 (454)
T ss_dssp STTCCCCHHHHHHHHHHTTSCEEEE
T ss_pred CCcchHHHHHHHHHHHHhcCCeEEe
Confidence 4566667999999999999999885
Done!