Query 022750
Match_columns 292
No_of_seqs 84 out of 106
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 05:52:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13837 Myb_DNA-bind_4: Myb/S 99.5 1.5E-14 3.3E-19 110.1 7.8 66 17-82 2-71 (90)
2 KOG4282 Transcription factor G 99.1 5.1E-10 1.1E-14 105.3 11.2 90 16-117 54-143 (345)
3 PF13873 Myb_DNA-bind_5: Myb/S 98.3 4.8E-06 1E-10 62.8 8.5 65 15-80 1-74 (78)
4 PF00249 Myb_DNA-binding: Myb- 97.9 2.3E-05 4.9E-10 54.7 4.8 47 17-75 2-48 (48)
5 PF13921 Myb_DNA-bind_6: Myb-l 97.5 0.00019 4.1E-09 51.6 4.7 41 19-73 1-41 (60)
6 smart00717 SANT SANT SWI3, AD 97.4 0.00038 8.3E-09 45.9 5.2 46 17-75 2-47 (49)
7 cd00167 SANT 'SWI3, ADA2, N-Co 97.1 0.0014 3E-08 42.7 4.9 44 18-74 1-44 (45)
8 PLN03212 Transcription repress 96.7 0.0019 4.1E-08 60.8 4.5 50 15-76 24-73 (249)
9 PLN03091 hypothetical protein; 96.0 0.0096 2.1E-07 60.1 5.2 51 13-75 11-61 (459)
10 PF12776 Myb_DNA-bind_3: Myb/S 95.9 0.046 9.9E-07 42.1 7.4 65 18-82 1-69 (96)
11 PLN03212 Transcription repress 94.2 0.11 2.3E-06 49.2 6.1 52 15-80 77-128 (249)
12 smart00595 MADF subfamily of S 93.8 0.1 2.2E-06 39.8 4.2 34 43-81 25-58 (89)
13 PLN03091 hypothetical protein; 93.7 0.15 3.2E-06 51.9 6.2 51 16-80 67-117 (459)
14 PF10545 MADF_DNA_bdg: Alcohol 92.5 0.22 4.9E-06 36.7 4.3 36 44-82 25-60 (85)
15 KOG0048 Transcription factor, 89.9 0.3 6.5E-06 44.7 3.3 49 15-75 8-56 (238)
16 KOG1279 Chromatin remodeling f 86.8 0.95 2.1E-05 46.7 4.8 49 12-74 249-297 (506)
17 KOG0051 RNA polymerase I termi 77.7 3 6.5E-05 44.1 4.5 59 15-80 435-512 (607)
18 COG5259 RSC8 RSC chromatin rem 71.4 6.3 0.00014 40.9 4.8 45 15-73 278-322 (531)
19 COG4842 Uncharacterized protei 51.8 11 0.00023 30.4 1.9 65 225-291 14-87 (97)
20 KOG0457 Histone acetyltransfer 51.0 25 0.00053 36.1 4.8 45 15-72 71-115 (438)
21 KOG4451 Uncharacterized conser 49.4 23 0.00049 34.1 4.0 71 219-290 52-134 (286)
22 TIGR02894 DNA_bind_RsfA transc 48.0 47 0.001 30.0 5.5 59 15-81 3-62 (161)
23 KOG0049 Transcription factor, 47.2 30 0.00065 37.7 4.9 55 14-81 358-412 (939)
24 KOG0050 mRNA splicing protein 46.4 25 0.00055 37.2 4.1 48 16-76 7-54 (617)
25 TIGR01557 myb_SHAQKYF myb-like 41.8 41 0.00088 25.0 3.6 42 17-70 4-49 (57)
26 PRK13923 putative spore coat p 39.6 77 0.0017 28.8 5.7 58 15-80 4-62 (170)
27 KOG0048 Transcription factor, 39.3 93 0.002 28.5 6.3 43 16-72 62-104 (238)
28 KOG0051 RNA polymerase I termi 29.5 81 0.0018 33.8 4.7 62 16-95 384-445 (607)
29 PF09356 Phage_BR0599: Phage c 28.2 24 0.00052 27.7 0.5 19 58-76 51-69 (80)
30 PF07455 Psu: Phage polarity s 26.7 50 0.0011 30.5 2.3 37 255-291 82-118 (188)
31 COG5147 REB1 Myb superfamily p 26.2 72 0.0016 33.5 3.6 54 13-80 69-122 (512)
32 PF08303 tRNA_lig_kinase: tRNA 26.1 62 0.0013 29.3 2.8 30 106-139 133-162 (168)
33 PRK13858 type IV secretion sys 23.5 61 0.0013 28.8 2.2 28 260-287 68-95 (147)
34 KOG1451 Oligophrenin-1 and rel 23.3 72 0.0016 34.6 3.0 27 265-291 41-67 (812)
No 1
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=99.55 E-value=1.5e-14 Score=110.06 Aligned_cols=66 Identities=29% Similarity=0.533 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHHH--HHhhhhh--ccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhh
Q 022750 17 PDWSSKEALILVNEIAA--VEADCLK--ALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMI 82 (292)
Q Consensus 17 p~WT~~ETLvLI~ak~a--ve~d~~r--s~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr 82 (292)
++||.+||+.||+.+.. ++..+.. .+.+...|..||+.|..+||.|++.||+.||+||...|++++
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k 71 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIK 71 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999998877 4444543 567778999999999999999999999999999999999996
No 2
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=99.11 E-value=5.1e-10 Score=105.35 Aligned_cols=90 Identities=20% Similarity=0.409 Sum_probs=73.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcCCCCCCCCChhc
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRTFPNSQTQT 95 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~~~SYW~Ms~~e 95 (292)
.++|+..||++||.++..+...+.++......|+.||..|..+||.|++.||+.||+||...||+.+.+...-
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~------- 126 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKKEGS------- 126 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcccCCC-------
Confidence 7999999999999988877777888888899999999999999999999999999999999999997322100
Q ss_pred hhhcCCCCCcHHHHHHHHHHhh
Q 022750 96 HTDCFPPNFDSELFKAIHDFVM 117 (292)
Q Consensus 96 Rke~LP~~FD~EVFdALd~f~~ 117 (292)
...-.-.+|..|+.++.
T Consensus 127 -----~~~s~~~ff~~le~~~~ 143 (345)
T KOG4282|consen 127 -----GEGSSWKFFSELEALLI 143 (345)
T ss_pred -----CCCccchHHHHHHHHHh
Confidence 01122356777777775
No 3
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=98.30 E-value=4.8e-06 Score=62.80 Aligned_cols=65 Identities=31% Similarity=0.474 Sum_probs=52.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhc--------cChHHhHHHHHHHhhhcCC-CCChhHHhHHHHHHHHHHhh
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKA--------LSSYQKWKIISETCTALDV-PRTANQCRRKWDSLLDEYKK 80 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs--------~Sa~eKW~~Vae~c~~~Gv-~Rs~~QCr~KW~NLl~dYKk 80 (292)
|+|+||..|..+||+.+. .+.+...+ ......|..|+..+.+.|. .|++.|++.+|.||...-|+
T Consensus 1 R~~~fs~~E~~~Lv~~v~-~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk 74 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVE-KHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK 74 (78)
T ss_pred CCCCCCHHHHHHHHHHHH-HhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999998644 23343332 2358899999999999987 99999999999999887664
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.89 E-value=2.3e-05 Score=54.74 Aligned_cols=47 Identities=30% Similarity=0.577 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
..||..|...|+++++..- ...|..||.++- ..|++.||+.+|.+|+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g---------~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYG---------KDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHST---------TTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhC---------CcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 4799999999998755311 117999999997 8999999999999874
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.49 E-value=0.00019 Score=51.61 Aligned_cols=41 Identities=32% Similarity=0.714 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHH
Q 022750 19 WSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS 73 (292)
Q Consensus 19 WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~N 73 (292)
||..|...|+..+... ...|..||..|- .|++.||+.||.+
T Consensus 1 WT~eEd~~L~~~~~~~----------g~~W~~Ia~~l~----~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKY----------GNDWKKIAEHLG----NRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHH----------TS-HHHHHHHST----TS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH----------CcCHHHHHHHHC----cCCHHHHHHHHHH
Confidence 9999999999864431 127999999984 8999999999999
No 6
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.42 E-value=0.00038 Score=45.90 Aligned_cols=46 Identities=30% Similarity=0.731 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
..||..|...|+.+.+..- ...|..||..+. .|++.+|+.+|.++.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g---------~~~w~~Ia~~~~----~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYG---------KNNWEKIAKELP----GRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 4799999999998654311 157999999997 999999999999875
No 7
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.06 E-value=0.0014 Score=42.70 Aligned_cols=44 Identities=27% Similarity=0.705 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHH
Q 022750 18 DWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL 74 (292)
Q Consensus 18 ~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NL 74 (292)
.||..|...|+.+.+.. ....|..|+..+. .|++.||+.+|.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~---------g~~~w~~Ia~~~~----~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKY---------GKNNWEKIAKELP----GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHH---------CcCCHHHHHhHcC----CCCHHHHHHHHHHh
Confidence 49999999999854421 1157999999996 49999999999986
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.71 E-value=0.0019 Score=60.80 Aligned_cols=50 Identities=24% Similarity=0.521 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD 76 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~ 76 (292)
+...||..|--.|++.++.. ....|..||.++ |..|+++|||.||.|.+.
T Consensus 24 KRg~WT~EEDe~L~~lV~ky---------G~~nW~~IAk~~---g~gRT~KQCReRW~N~L~ 73 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKE---------GEGRWRSLPKRA---GLLRCGKSCRLRWMNYLR 73 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHh---------CcccHHHHHHhh---hcCCCcchHHHHHHHhhc
Confidence 34569999999999754421 234799999764 578999999999998874
No 9
>PLN03091 hypothetical protein; Provisional
Probab=96.01 E-value=0.0096 Score=60.13 Aligned_cols=51 Identities=22% Similarity=0.441 Sum_probs=38.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 13 SQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 13 ~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
+-+...||..|=-.|++++... ....|..||..+ |..|+++|||.||.|.+
T Consensus 11 klrKg~WTpEEDe~L~~~V~ky---------G~~nWs~IAk~~---g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 11 KLRKGLWSPEEDEKLLRHITKY---------GHGCWSSVPKQA---GLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCcCCCCCHHHHHHHHHHHHHh---------CcCCHHHHhhhh---ccCcCcchHhHHHHhcc
Confidence 4455679999999999754321 224799999764 67899999999999754
No 10
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=95.87 E-value=0.046 Score=42.07 Aligned_cols=65 Identities=17% Similarity=0.326 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhh---ccChHHhHHHHHHHhhh-cCCCCChhHHhHHHHHHHHHHhhhh
Q 022750 18 DWSSKEALILVNEIAAVEADCLK---ALSSYQKWKIISETCTA-LDVPRTANQCRRKWDSLLDEYKKMI 82 (292)
Q Consensus 18 ~WT~~ETLvLI~ak~ave~d~~r---s~Sa~eKW~~Vae~c~~-~Gv~Rs~~QCr~KW~NLl~dYKkIr 82 (292)
+||...+.+||+.....-....+ +.-...-|..|+..+.. -|..-+..||+.||..|-..|+-++
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~ 69 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWK 69 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHH
Confidence 59999999999865433223333 22246779998888776 4788899999999999999999995
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=94.21 E-value=0.11 Score=49.24 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhh
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKK 80 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKk 80 (292)
....||..|-..|++..+. -..+|..||.+|- .|+.+||+.+|.+++..+..
T Consensus 77 ~kgpWT~EED~lLlel~~~----------~GnKWs~IAk~Lp----GRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRL----------LGNRWSLIAGRIP----GRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred ccCCCChHHHHHHHHHHHh----------ccccHHHHHhhcC----CCCHHHHHHHHHHHHhHHHH
Confidence 4568999999988864332 2358999999996 79999999999998865533
No 12
>smart00595 MADF subfamily of SANT domain.
Probab=93.77 E-value=0.1 Score=39.80 Aligned_cols=34 Identities=24% Similarity=0.731 Sum_probs=30.8
Q ss_pred ChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhh
Q 022750 43 SSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKM 81 (292)
Q Consensus 43 Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkI 81 (292)
...+-|..|+..|.. ++.+|+.||.||-..|...
T Consensus 25 ~r~~aW~~Ia~~l~~-----~~~~~~~kw~~LR~~y~~e 58 (89)
T smart00595 25 EKRKAWEEIAEELGL-----SVEECKKRWKNLRDRYRRE 58 (89)
T ss_pred HHHHHHHHHHHHHCc-----CHHHHHHHHHHHHHHHHHH
Confidence 357799999999965 9999999999999999888
No 13
>PLN03091 hypothetical protein; Provisional
Probab=93.66 E-value=0.15 Score=51.91 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhh
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKK 80 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKk 80 (292)
...||..|-..||+..+. -..+|..||.+|- .|+.+||+.+|..++..|.+
T Consensus 67 KgpWT~EED~lLLeL~k~----------~GnKWskIAk~LP----GRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 67 RGTFSQQEENLIIELHAV----------LGNRWSQIAAQLP----GRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred CCCCCHHHHHHHHHHHHH----------hCcchHHHHHhcC----CCCHHHHHHHHHHHHHHHHH
Confidence 468999999999975442 1249999999996 99999999999999987654
No 14
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=92.52 E-value=0.22 Score=36.65 Aligned_cols=36 Identities=19% Similarity=0.656 Sum_probs=31.6
Q ss_pred hHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhh
Q 022750 44 SYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMI 82 (292)
Q Consensus 44 a~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr 82 (292)
..+-|..|+..| |..-++.+|+.+|.+|...|....
T Consensus 25 r~~aw~~Ia~~l---~~~~~~~~~~~~w~~Lr~~y~~~~ 60 (85)
T PF10545_consen 25 REEAWQEIAREL---GKEFSVDDCKKRWKNLRDRYRREL 60 (85)
T ss_pred HHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHHH
Confidence 688999999999 545568999999999999999884
No 15
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=89.93 E-value=0.3 Score=44.67 Aligned_cols=49 Identities=20% Similarity=0.473 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
+.+.||..|=..||+-++. -..-.|..|+..+ |..|.+++||-||-|-+
T Consensus 8 ~kGpWt~EED~~L~~~V~~---------~G~~~W~~i~k~~---gl~R~GKSCRlRW~NyL 56 (238)
T KOG0048|consen 8 VKGPWTQEEDLTQIRSIKS---------FGKHNGTALPKLA---GLRRCGKSCRLRWTNYL 56 (238)
T ss_pred cCCCCChHHHHHHHHHHHH---------hCCCCcchhhhhc---CCCccchHHHHHhhccc
Confidence 3589999999999985442 1233899999764 66999999999999744
No 16
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=86.78 E-value=0.95 Score=46.70 Aligned_cols=49 Identities=22% Similarity=0.575 Sum_probs=40.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHH
Q 022750 12 RSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL 74 (292)
Q Consensus 12 R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NL 74 (292)
.....++||.+||+.|+++ ++. -.+.|.-|+.++. .|+..||-.|-=.|
T Consensus 249 ~~~~~~~WT~qE~lLLLE~---ie~-------y~ddW~kVa~hVg----~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEA---IEM-------YGDDWNKVADHVG----TKSQEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHH---HHH-------hcccHHHHHhccC----CCCHHHHHHHHHhc
Confidence 5678899999999999985 443 4679999999998 99999998876444
No 17
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=77.70 E-value=3 Score=44.06 Aligned_cols=59 Identities=25% Similarity=0.367 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhh---------------ccC----hHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLK---------------ALS----SYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~r---------------s~S----a~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
....||..|.--|+.. |+...+. +.. ..=-|..|++.+. .|+.-||+-||.-|+
T Consensus 435 ~r~~Ws~eEe~~Llk~---V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~----TR~~~qCr~Kw~kl~ 507 (607)
T KOG0051|consen 435 NRGAWSIEEEEKLLKT---VNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLG----TRSRIQCRYKWYKLT 507 (607)
T ss_pred ccCcchHHHHHHHHHH---HHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhc----CCCcchHHHHHHHHH
Confidence 4568999999999974 4322211 111 3446999999666 999999999999999
Q ss_pred HHHhh
Q 022750 76 DEYKK 80 (292)
Q Consensus 76 ~dYKk 80 (292)
..+-.
T Consensus 508 ~~~s~ 512 (607)
T KOG0051|consen 508 TSPSF 512 (607)
T ss_pred hhHHh
Confidence 88743
No 18
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=71.41 E-value=6.3 Score=40.90 Aligned_cols=45 Identities=22% Similarity=0.467 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHH
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS 73 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~N 73 (292)
+-.+|+.+|++.|++++-. =.+-|.-||.+-. +++..||=-+.=+
T Consensus 278 ~dk~WS~qE~~LLLEGIe~----------ygDdW~kVA~HVg----tKt~EqCIl~FL~ 322 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEM----------YGDDWDKVARHVG----TKTKEQCILHFLQ 322 (531)
T ss_pred ccccccHHHHHHHHHHHHH----------hhhhHHHHHHHhC----CCCHHHHHHHHHc
Confidence 5579999999999986554 4568999999876 9999999765433
No 19
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.83 E-value=11 Score=30.39 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=42.2
Q ss_pred HHHHHHHHhHHHHHHHHHhhcccc-------cccccCccchhhHHHH--HhhhHHHHHHHHHHHHHhHhhhhhhhc
Q 022750 225 MMVAKLQENAELIHAIVAESADYS-------DADLNNVQDLESEFVR--RQGDKLIACLGEIVNTLNQFTDHVQEC 291 (292)
Q Consensus 225 ~~~~kl~~na~~I~ai~~e~~d~~-------~~~~~n~e~~~~d~~R--~qGd~lI~~L~~i~n~l~q~~~~~q~c 291 (292)
.+...+...+..|++++.+....- .|.+ -+.|...+.+ +..-+|+.+|..|.++|++-.+.+++.
T Consensus 14 ~~A~~~~~~~~~i~~~l~~l~s~~~~l~~~W~G~a--~~~f~~~~~~w~~~~~~l~~~l~~i~~~l~~~a~~~~~~ 87 (97)
T COG4842 14 ATAKDYAGSSGEIQALLQDLASEIAKLQSAWEGDA--AEAFQSEQQQWNQAATELNEALEQLADALRHAADAFEEA 87 (97)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777421111 1111 1344444444 777899999999999999998888764
No 20
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=51.03 E-value=25 Score=36.15 Aligned_cols=45 Identities=18% Similarity=0.626 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHH
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWD 72 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~ 72 (292)
..|.||..|-+.||+|.. .-..--|..||+++- .++..+|++-..
T Consensus 71 ~~~~WtadEEilLLea~~---------t~G~GNW~dIA~hIG----tKtkeeck~hy~ 115 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAE---------TYGFGNWQDIADHIG----TKTKEECKEHYL 115 (438)
T ss_pred CCCCCChHHHHHHHHHHH---------HhCCCcHHHHHHHHc----ccchHHHHHHHH
Confidence 468999999999998522 123446999999997 899999997543
No 21
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=49.41 E-value=23 Score=34.11 Aligned_cols=71 Identities=25% Similarity=0.271 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHh------HHHHHHHHHhhcccccccccCccchhhHHHHHhhhHHH------HHHHHHHHHHhHhhh
Q 022750 219 VEENEQMMVAKLQEN------AELIHAIVAESADYSDADLNNVQDLESEFVRRQGDKLI------ACLGEIVNTLNQFTD 286 (292)
Q Consensus 219 ~ee~~~~~~~kl~~n------a~~I~ai~~e~~d~~~~~~~n~e~~~~d~~R~qGd~lI------~~L~~i~n~l~q~~~ 286 (292)
.||+++-|-.-|.+| .+.|||-+++|..-. +-..+.+.--++..++.|+.+. +-|..|--+||.|.|
T Consensus 52 leey~~em~~lL~ekm~Hveelr~iHadiN~men~i-kq~k~~~~~~~~~~~r~~eey~~lk~h~d~lR~~~lgl~~L~D 130 (286)
T KOG4451|consen 52 LEEYELEMGVLLLEKMGHVEELREIHADINEMENDI-KQVKALEQHITSCNGRKGEEYMELKSHADELRQINLGLNTLED 130 (286)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhcCccchhh
Confidence 455555554444443 578999999873222 2234446666777888888774 567777777778888
Q ss_pred hhhh
Q 022750 287 HVQE 290 (292)
Q Consensus 287 ~~q~ 290 (292)
+-.+
T Consensus 131 l~ee 134 (286)
T KOG4451|consen 131 LTEE 134 (286)
T ss_pred Hhhh
Confidence 7543
No 22
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=48.03 E-value=47 Score=30.01 Aligned_cols=59 Identities=19% Similarity=0.454 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH-HHhhh
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD-EYKKM 81 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~-dYKkI 81 (292)
|.--||..|=+.|.+ .|-.-...+.+--.-.++|+..| +|++.-|+=+|.+.+. .|..-
T Consensus 3 RQDAWT~eeDlLLAE---tVLrhIReG~TQL~AFeEvg~~L-----~RTsAACGFRWNs~VRkqY~~~ 62 (161)
T TIGR02894 3 RQDAWTHEEDLLLAE---TVLRHIREGSTQLSAFEEVGRAL-----NRTAAACGFRWNAYVRKQYEEA 62 (161)
T ss_pred cccccccHHHHHHHH---HHHHHHhcchHHHHHHHHHHHHH-----cccHHHhcchHHHHHHHHHHHH
Confidence 455799999999986 34444444555566678898888 6999999999998775 56653
No 23
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=47.21 E-value=30 Score=37.73 Aligned_cols=55 Identities=20% Similarity=0.530 Sum_probs=41.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhh
Q 022750 14 QVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKM 81 (292)
Q Consensus 14 ~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkI 81 (292)
-..+.||.+|-+.|+.|+. . -+..-|--|.+..= +|+-.|||++.-|.+..-.|+
T Consensus 358 ikhg~wt~~ED~~L~~AV~---~------Yg~kdw~k~R~~vP----nRSdsQcR~RY~nvL~~s~K~ 412 (939)
T KOG0049|consen 358 VKHGRWTDQEDVLLVCAVS---R------YGAKDWAKVRQAVP----NRSDSQCRERYTNVLNRSAKV 412 (939)
T ss_pred ccCCCCCCHHHHHHHHHHH---H------hCccchhhHHHhcC----CccHHHHHHHHHHHHHHhhcc
Confidence 3567899999999997533 1 23455666655443 999999999999999887777
No 24
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=46.43 E-value=25 Score=37.15 Aligned_cols=48 Identities=27% Similarity=0.609 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD 76 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~ 76 (292)
.+.|+..|--+|=.+. .+.....|..|+..+. .-++.||+-+|+--+.
T Consensus 7 ggvwrntEdeilkaav---------~kyg~nqws~i~sll~----~kt~rqC~~rw~e~ld 54 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAV---------MKYGKNQWSRIASLLN----RKTARQCKARWEEWLD 54 (617)
T ss_pred cceecccHHHHHHHHH---------HHcchHHHHHHHHHHh----hcchhHHHHHHHHHhC
Confidence 4679988888887532 2667889999999998 6699999999984443
No 25
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=41.77 E-value=41 Score=25.01 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhhccChHHhH---HHHHHHhhhcCCCC-ChhHHhHH
Q 022750 17 PDWSSKEALILVNEIAAVEADCLKALSSYQKW---KIISETCTALDVPR-TANQCRRK 70 (292)
Q Consensus 17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW---~~Vae~c~~~Gv~R-s~~QCr~K 70 (292)
-.||..|...++.|+... ..-.| +.|++.|. +.| +..||+.-
T Consensus 4 ~~WT~eeh~~Fl~ai~~~---------G~g~~a~pk~I~~~~~---~~~lT~~qV~SH 49 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKL---------GGPDWATPKRILELMV---VDGLTRDQVASH 49 (57)
T ss_pred CCCCHHHHHHHHHHHHHh---------CCCcccchHHHHHHcC---CCCCCHHHHHHH
Confidence 379999999999865532 12247 78887765 456 88888764
No 26
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=39.60 E-value=77 Score=28.77 Aligned_cols=58 Identities=17% Similarity=0.408 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHH-HHHHhh
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL-LDEYKK 80 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NL-l~dYKk 80 (292)
|.--||..+=+.|.+ .+-.-...+.+-..--+.|+.+| .|++.+|..+|... -..|..
T Consensus 4 rqdawt~e~d~llae---~vl~~i~eg~tql~afe~~g~~L-----~rt~aac~fRwNs~vrk~Yee 62 (170)
T PRK13923 4 RQDAWTQERDGLLAE---VVLRHIREGGTQLKAFEEVGDAL-----KRTAAACGFRWNSVVRKQYQE 62 (170)
T ss_pred hhhhhhhHHHHHHHH---HHHHHHhccchHHHHHHHHHHHH-----hhhHHHHHhHHHHHHHHHHHH
Confidence 456799999888864 22222333444555667777777 49999999999644 445654
No 27
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=39.32 E-value=93 Score=28.54 Aligned_cols=43 Identities=21% Similarity=0.468 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHH
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWD 72 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~ 72 (292)
...||..|..++|++-+. -..||..||.+|- .|+-+.-+-=|.
T Consensus 62 rg~fT~eEe~~Ii~lH~~----------~GNrWs~IA~~LP----GRTDNeIKN~Wn 104 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHAL----------LGNRWSLIAGRLP----GRTDNEVKNHWN 104 (238)
T ss_pred CCCCCHHHHHHHHHHHHH----------HCcHHHHHHhhCC----CcCHHHHHHHHH
Confidence 568999999999986443 3446999999999 899977776664
No 28
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=29.49 E-value=81 Score=33.79 Aligned_cols=62 Identities=21% Similarity=0.379 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcCCCCCCCCChhc
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRTFPNSQTQT 95 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~~~SYW~Ms~~e 95 (292)
.+.||..|.-.|-..... -...|..|+..| .|.|.-|+++|.+.+.-=.+ ...+-|..+.++
T Consensus 384 rg~wt~ee~eeL~~l~~~----------~g~~W~~Ig~~l-----gr~P~~crd~wr~~~~~g~~---~~r~~Ws~eEe~ 445 (607)
T KOG0051|consen 384 RGKWTPEEEEELKKLVVE----------HGNDWKEIGKAL-----GRMPMDCRDRWRQYVKCGSK---RNRGAWSIEEEE 445 (607)
T ss_pred cCCCCcchHHHHHHHHHH----------hcccHHHHHHHH-----ccCcHHHHHHHHHhhccccc---cccCcchHHHHH
Confidence 457999888777643222 244799999987 59999999999875432222 355678765443
No 29
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=28.22 E-value=24 Score=27.73 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=17.1
Q ss_pred cCCCCChhHHhHHHHHHHH
Q 022750 58 LDVPRTANQCRRKWDSLLD 76 (292)
Q Consensus 58 ~Gv~Rs~~QCr~KW~NLl~ 76 (292)
-|++++...|+.|..|+++
T Consensus 51 ~GCDkt~~tC~~kF~N~~N 69 (80)
T PF09356_consen 51 PGCDKTFATCRAKFNNALN 69 (80)
T ss_pred eCCCCCHHHHHHHhCCccc
Confidence 5899999999999999764
No 30
>PF07455 Psu: Phage polarity suppression protein (Psu); InterPro: IPR010006 This entry is represented by Bacteriophage P4, Psu, the polarity suppression protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of phage polarity suppression proteins (Psu) (approximately 190 residues long). The Psu protein of Bacteriophage P4 causes suppression of transcriptional polarity in Escherichia coli by overcoming Rho termination factor activity [].
Probab=26.66 E-value=50 Score=30.51 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=32.8
Q ss_pred ccchhhHHHHHhhhHHHHHHHHHHHHHhHhhhhhhhc
Q 022750 255 VQDLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQEC 291 (292)
Q Consensus 255 ~e~~~~d~~R~qGd~lI~~L~~i~n~l~q~~~~~q~c 291 (292)
+.+.=.||-..-|+.||+.|.-+..+|+.-+.+|..|
T Consensus 82 ~~~~l~dFMq~hG~aL~~aLap~lmgl~~~~a~v~~~ 118 (188)
T PF07455_consen 82 ARQRLNDFMQQHGAALIAALAPELMGLSEQPALVVVH 118 (188)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHHHhCccccchHHHhc
Confidence 4666779999999999999999999999999888776
No 31
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=26.18 E-value=72 Score=33.46 Aligned_cols=54 Identities=22% Similarity=0.449 Sum_probs=42.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhh
Q 022750 13 SQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKK 80 (292)
Q Consensus 13 ~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKk 80 (292)
.....+|+..|--.||.. ... ...+|..|+.++- .|++.||-.+|-+++.+|-+
T Consensus 69 ~lk~~~~~~eed~~li~l----~~~------~~~~wstia~~~d----~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 69 QLKKKNWSEEEDEQLIDL----DKE------LGTQWSTIADYKD----RRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred hcccccccHHHHHHHHHH----HHh------cCchhhhhccccC----ccchHHHHHHHHHHhhhhhc
Confidence 345568899999888863 222 2334999999986 49999999999999999988
No 32
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=26.12 E-value=62 Score=29.31 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcchH
Q 022750 106 SELFKAIHDFVMSKDNRSDDTDPDSDTDPEADFS 139 (292)
Q Consensus 106 ~EVFdALd~f~~~r~~~~~~~dp~~d~~~~~D~~ 139 (292)
..+..+|..|+.+-+ +.||+..||.++|..
T Consensus 133 ~~~~~Im~gFi~rfe----p~~~~~~pD~~FD~v 162 (168)
T PF08303_consen 133 KKVEGIMEGFIKRFE----PVDPDREPDSGFDHV 162 (168)
T ss_pred HHHHHHHHHHHHhcC----CCCCCCCCccccCEe
Confidence 578999999999999 899999999988864
No 33
>PRK13858 type IV secretion system T-DNA border endonuclease VirD1; Provisional
Probab=23.48 E-value=61 Score=28.83 Aligned_cols=28 Identities=7% Similarity=0.272 Sum_probs=23.1
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHhHhhhh
Q 022750 260 SEFVRRQGDKLIACLGEIVNTLNQFTDH 287 (292)
Q Consensus 260 ~d~~R~qGd~lI~~L~~i~n~l~q~~~~ 287 (292)
-++++.+-.+||..|+.|.|-||||.-.
T Consensus 68 ~r~T~e~~~~lir~l~gianNLNQLAr~ 95 (147)
T PRK13858 68 DAETREKMEAILQSIGTLSSNIAALLSA 95 (147)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777778999999999999999654
No 34
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=23.29 E-value=72 Score=34.60 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=25.0
Q ss_pred HhhhHHHHHHHHHHHHHhHhhhhhhhc
Q 022750 265 RQGDKLIACLGEIVNTLNQFTDHVQEC 291 (292)
Q Consensus 265 ~qGd~lI~~L~~i~n~l~q~~~~~q~c 291 (292)
.+|..||+||.|+..+...|.++||+-
T Consensus 41 kdg~~li~a~knls~a~~kfa~tl~~f 67 (812)
T KOG1451|consen 41 KDGKELISALKNLSSAVRKFAQTLQEF 67 (812)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999973
Done!