Query 022750
Match_columns 292
No_of_seqs 84 out of 106
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:30:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022750.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022750hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.7 9.8E-18 3.4E-22 128.8 8.8 70 13-82 1-70 (86)
2 1ity_A TRF1; helix-turn-helix, 98.2 4.4E-06 1.5E-10 61.6 6.8 52 13-76 7-59 (69)
3 3sjm_A Telomeric repeat-bindin 98.1 3E-06 1E-10 62.5 4.9 50 16-76 11-60 (64)
4 1w0t_A Telomeric repeat bindin 98.1 4.5E-06 1.5E-10 58.6 5.1 48 17-76 3-51 (53)
5 1guu_A C-MYB, MYB proto-oncoge 98.0 7.3E-06 2.5E-10 57.0 5.1 47 16-75 3-49 (52)
6 2din_A Cell division cycle 5-l 98.0 1.8E-05 6.3E-10 57.7 7.1 55 15-84 8-62 (66)
7 1x41_A Transcriptional adaptor 97.9 1.5E-05 5.2E-10 57.4 5.1 47 16-75 8-54 (60)
8 1gvd_A MYB proto-oncogene prot 97.9 1.3E-05 4.3E-10 55.9 4.1 47 16-75 3-49 (52)
9 2d9a_A B-MYB, MYB-related prot 97.9 2E-05 6.8E-10 56.3 5.3 48 15-75 7-54 (60)
10 2elk_A SPCC24B10.08C protein; 97.8 3.1E-05 1.1E-09 55.6 5.9 47 17-75 10-56 (58)
11 2yus_A SWI/SNF-related matrix- 97.8 3.5E-05 1.2E-09 59.1 6.1 50 11-74 13-62 (79)
12 2cjj_A Radialis; plant develop 97.7 8.5E-05 2.9E-09 58.9 7.4 59 16-84 8-66 (93)
13 2aje_A Telomere repeat-binding 97.7 5.5E-05 1.9E-09 61.3 6.4 93 5-118 2-95 (105)
14 2cqr_A RSGI RUH-043, DNAJ homo 97.7 7.1E-05 2.4E-09 56.9 6.0 52 16-77 18-69 (73)
15 2dim_A Cell division cycle 5-l 97.7 4.5E-05 1.5E-09 56.1 4.7 48 15-75 8-55 (70)
16 2yum_A ZZZ3 protein, zinc fing 97.6 0.00017 5.7E-09 53.6 7.6 54 16-77 8-61 (75)
17 2juh_A Telomere binding protei 97.6 0.0002 6.8E-09 59.4 8.5 58 11-77 12-69 (121)
18 2cu7_A KIAA1915 protein; nucle 97.6 0.00013 4.6E-09 54.1 6.7 51 15-79 8-58 (72)
19 2roh_A RTBP1, telomere binding 97.6 0.00017 5.9E-09 59.9 7.7 89 11-120 26-115 (122)
20 2ckx_A NGTRF1, telomere bindin 97.5 0.00022 7.5E-09 55.4 6.7 74 18-111 2-76 (83)
21 2cqq_A RSGI RUH-037, DNAJ homo 97.4 0.00049 1.7E-08 52.0 7.8 58 15-84 7-64 (72)
22 2llk_A Cyclin-D-binding MYB-li 97.2 0.00043 1.5E-08 52.6 5.1 46 15-75 22-67 (73)
23 3osg_A MYB21; transcription-DN 97.2 0.00041 1.4E-08 56.2 5.3 50 13-76 8-57 (126)
24 2k9n_A MYB24; R2R3 domain, DNA 97.1 0.001 3.5E-08 52.4 6.2 51 15-79 52-102 (107)
25 2k9n_A MYB24; R2R3 domain, DNA 97.1 0.00061 2.1E-08 53.6 4.9 46 17-75 2-47 (107)
26 2ltp_A Nuclear receptor corepr 96.1 9E-05 3.1E-09 57.5 0.0 53 12-78 12-64 (89)
27 1gv2_A C-MYB, MYB proto-oncoge 97.0 0.00034 1.2E-08 54.5 3.0 47 16-75 4-50 (105)
28 3osg_A MYB21; transcription-DN 97.0 0.00078 2.7E-08 54.5 4.9 49 16-78 62-110 (126)
29 1gv2_A C-MYB, MYB proto-oncoge 96.9 0.00079 2.7E-08 52.4 4.2 48 15-76 55-102 (105)
30 1h8a_C AMV V-MYB, MYB transfor 96.8 0.001 3.6E-08 53.6 4.3 47 16-75 27-73 (128)
31 3zqc_A MYB3; transcription-DNA 96.7 0.0011 3.6E-08 54.0 3.4 48 16-77 54-101 (131)
32 3zqc_A MYB3; transcription-DNA 96.4 0.00061 2.1E-08 55.4 0.4 48 16-76 2-49 (131)
33 1h8a_C AMV V-MYB, MYB transfor 96.3 0.0021 7.1E-08 51.8 3.1 48 15-76 78-125 (128)
34 2eqr_A N-COR1, N-COR, nuclear 96.1 0.017 5.9E-07 41.6 6.7 53 6-73 3-55 (61)
35 1h89_C C-MYB, MYB proto-oncoge 96.1 0.0049 1.7E-07 51.2 4.3 48 15-75 57-104 (159)
36 1h89_C C-MYB, MYB proto-oncoge 95.6 0.0071 2.4E-07 50.3 3.3 48 15-76 109-156 (159)
37 1wgx_A KIAA1903 protein; MYB D 95.0 0.041 1.4E-06 42.0 5.5 51 16-76 8-58 (73)
38 1ign_A Protein (RAP1); RAP1,ye 94.2 0.03 1E-06 51.5 3.7 53 17-77 9-61 (246)
39 1x58_A Hypothetical protein 49 92.3 0.18 6.2E-06 37.6 4.7 51 15-76 7-57 (62)
40 2iw5_B Protein corest, REST co 90.4 0.46 1.6E-05 43.5 6.2 46 14-73 131-176 (235)
41 3hm5_A DNA methyltransferase 1 87.9 1.3 4.5E-05 35.1 6.5 57 17-83 31-88 (93)
42 1ug2_A 2610100B20RIK gene prod 72.5 8.8 0.0003 30.8 6.2 60 12-82 29-88 (95)
43 4iej_A DNA methyltransferase 1 71.7 10 0.00036 30.0 6.4 58 16-83 30-88 (93)
44 2xag_B REST corepressor 1; ami 67.8 8.6 0.0003 38.3 6.4 43 14-70 378-420 (482)
45 1fex_A TRF2-interacting telome 65.1 7 0.00024 28.0 3.9 51 18-73 4-55 (59)
46 4eef_G F-HB80.4, designed hema 45.1 1.2 4.2E-05 34.3 -3.2 47 14-70 18-64 (74)
47 2kwv_A RAD30 homolog B, DNA po 40.7 2.7 9.3E-05 29.9 -1.7 13 100-112 12-24 (48)
48 2lr8_A CAsp8-associated protei 44.5 6.7 0.00023 29.9 0.0 53 16-80 14-66 (70)
49 4a69_C Nuclear receptor corepr 36.6 32 0.0011 26.6 3.7 41 14-68 41-81 (94)
50 2wtg_A Globin-like protein; me 32.2 30 0.001 28.8 3.0 37 252-288 54-91 (159)
51 2yqk_A Arginine-glutamic acid 31.5 75 0.0026 22.6 4.7 40 16-69 9-49 (63)
52 1wmu_A Hemoglobin D alpha chai 28.4 32 0.0011 27.0 2.5 31 259-289 51-81 (141)
53 2r80_A Hemoglobin subunit alph 26.1 37 0.0013 26.9 2.5 29 261-289 53-81 (141)
54 1jeb_A Hemoglobin zeta chain; 25.4 39 0.0013 26.5 2.5 29 260-288 53-81 (142)
55 3d1k_A Hemoglobin subunit alph 25.0 41 0.0014 26.5 2.6 31 259-289 52-82 (142)
56 1xq5_A Hemoglobin alpha-1 chai 24.6 41 0.0014 26.6 2.5 30 260-289 54-83 (143)
57 2r80_B Hemoglobin subunit beta 23.9 43 0.0015 26.5 2.5 29 261-289 58-86 (146)
58 1k3e_A CEST; chaperone, secret 23.5 52 0.0018 28.1 3.1 23 268-290 107-129 (156)
59 2w72_C Human hemoglobin A; iro 22.6 48 0.0016 25.9 2.5 30 259-288 51-80 (141)
60 3bom_A Hemoglobin subunit alph 22.4 44 0.0015 26.5 2.2 31 259-289 53-83 (143)
61 3rx6_A Polarity suppression pr 21.4 55 0.0019 29.1 2.8 37 255-291 81-117 (190)
62 3d1k_B Hemoglobin subunit beta 21.3 59 0.002 25.9 2.8 29 261-289 58-86 (146)
63 3mkb_A Hemoglobin subunit alph 20.7 52 0.0018 26.5 2.4 64 225-289 12-81 (140)
64 1spg_A Hemoglobin; carbon mono 20.4 57 0.002 25.9 2.6 31 259-289 54-84 (144)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.73 E-value=9.8e-18 Score=128.79 Aligned_cols=70 Identities=23% Similarity=0.393 Sum_probs=66.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhh
Q 022750 13 SQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMI 82 (292)
Q Consensus 13 ~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr 82 (292)
+.|.++||.+||++||+++...+..+..+.++...|+.||+.|+.+||+||+.||+.||+||...||+|+
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k 70 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAK 70 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999998888888888889999999999999999999999999999999999999996
No 2
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.17 E-value=4.4e-06 Score=61.55 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=41.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCC-CCChhHHhHHHHHHHH
Q 022750 13 SQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDV-PRTANQCRRKWDSLLD 76 (292)
Q Consensus 13 ~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv-~Rs~~QCr~KW~NLl~ 76 (292)
+.....||..|-..|+.++... ...+|..||.++- + .|++.||+.+|.|++.
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~---------G~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKY---------GEGNWSKILLHYK---FNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHH---------CSSCHHHHHHHSC---CSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH---------CCCcHHHHHHHcC---cCCCCHHHHHHHHHHHcC
Confidence 3445689999999999864421 1238999999984 4 8999999999999985
No 3
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.10 E-value=3e-06 Score=62.53 Aligned_cols=50 Identities=20% Similarity=0.401 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD 76 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~ 76 (292)
...||..|-..|++++... ..-.|..||.++-- -.|++.||++||.||+.
T Consensus 11 k~~WT~eED~~L~~~V~~~---------G~~~W~~Ia~~~~~--~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKY---------GEGNWAAISKNYPF--VNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHH---------CTTCHHHHHHHSCC--SSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcc---------CCCchHHHHhhcCC--CCCCHHHHHHHHHHHhc
Confidence 3479999999999864421 12369999987521 26999999999999974
No 4
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.08 E-value=4.5e-06 Score=58.60 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCC-CCChhHHhHHHHHHHH
Q 022750 17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDV-PRTANQCRRKWDSLLD 76 (292)
Q Consensus 17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv-~Rs~~QCr~KW~NLl~ 76 (292)
..||..|-..|+.++... ...+|..||.++- + .|++.||+.+|.||+.
T Consensus 3 ~~WT~eEd~~L~~~v~~~---------G~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKY---------GEGNWSKILLHYK---FNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHH---------CTTCHHHHHHHSC---CSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH---------CcCCHHHHHHHcC---CCCCCHHHHHHHHHHHHc
Confidence 589999999999864421 1248999999983 4 5999999999999873
No 5
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.01 E-value=7.3e-06 Score=56.97 Aligned_cols=47 Identities=26% Similarity=0.580 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
...||..|-..|++++... ...+|..||.++- .|++.||+.+|.+++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~---------G~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQN---------GTDDWKVIANYLP----NRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHH---------CSSCHHHHHHTST----TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 4589999999999864421 1137999999985 799999999999987
No 6
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=1.8e-05 Score=57.65 Aligned_cols=55 Identities=25% Similarity=0.447 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcC
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVR 84 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~ 84 (292)
....||..|-..|+++... .. .+|..||. +- | |++.||+.+|.+++..-.+...+
T Consensus 8 ~k~~WT~eED~~L~~~~~~--------~g--~~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKL--------MP--TQWRTIAP-II--G--RTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHH--------CT--TCHHHHHH-HH--S--SCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCHHHHHHHHHHHHH--------cC--CCHHHHhc-cc--C--cCHHHHHHHHHHHhChHhcCCCC
Confidence 3457999999999975332 12 28999999 54 4 99999999999999887766543
No 7
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.89 E-value=1.5e-05 Score=57.38 Aligned_cols=47 Identities=15% Similarity=0.623 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
...||..|-..|++++.. -...+|..||.++- .|++.||+.+|.+.+
T Consensus 8 ~~~WT~eED~~L~~~v~~---------~G~~~W~~Ia~~~~----~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMD---------CGFGNWQDVANQMC----TKTKEECEKHYMKYF 54 (60)
T ss_dssp CSSSCHHHHHHHHHHHHH---------TCTTCHHHHHHHHT----TSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH---------HCcCcHHHHHHHhC----CCCHHHHHHHHHHHc
Confidence 457999999999986442 11248999999995 699999999999875
No 8
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.86 E-value=1.3e-05 Score=55.87 Aligned_cols=47 Identities=23% Similarity=0.613 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
...||..|-..|++++... ....|..||.+|- .|++.||+.+|.|.+
T Consensus 3 k~~Wt~eED~~L~~~v~~~---------G~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKY---------GPKRWSVIAKHLK----GRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHH---------CTTCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHH---------CcChHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 4689999999999854421 1125999999985 799999999999875
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.86 E-value=2e-05 Score=56.35 Aligned_cols=48 Identities=25% Similarity=0.511 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
....||..|-..|++++... ...+|..||.+|- .|++.||+.+|.+++
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~---------G~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQF---------GQQDWKFLASHFP----NRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHT---------CTTCHHHHHHHCS----SSCHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHcc----CCCHHHHHHHHHHHc
Confidence 34589999999999854421 1247999999985 699999999999875
No 10
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.83 E-value=3.1e-05 Score=55.60 Aligned_cols=47 Identities=21% Similarity=0.518 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
..||..|-..|++++.. -....|..||.++- -.|++.||+.+|.|+.
T Consensus 10 ~~WT~eED~~L~~~v~~---------~G~~~W~~IA~~~~---~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 10 ENWGADEELLLIDACET---------LGLGNWADIADYVG---NARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCHHHHHHHHHHHHH---------TTTTCHHHHHHHHC---SSCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH---------HCcCCHHHHHHHHC---CCCCHHHHHHHHHHHc
Confidence 46999999999986442 12258999999983 3799999999999864
No 11
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.80 E-value=3.5e-05 Score=59.09 Aligned_cols=50 Identities=24% Similarity=0.602 Sum_probs=40.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHH
Q 022750 11 TRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL 74 (292)
Q Consensus 11 ~R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NL 74 (292)
........||..|.+.|++++.. .. ..|..||.++- .|++.||+.+|.+|
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~--------~G--~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEM--------YK--DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHH--------SS--SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHHHHHHHHH--------hC--CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 33344679999999999986442 11 58999999985 79999999999887
No 12
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.73 E-value=8.5e-05 Score=58.86 Aligned_cols=59 Identities=19% Similarity=0.433 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcC
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVR 84 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~ 84 (292)
...||..|-..|+++.+. + ......+|..||.++- .|+.+||+.+|.+|+.+.+.|+.|
T Consensus 8 ~~~WT~eEd~~L~~al~~----~--~~~~~~rW~~IA~~vp----GRT~~q~k~ry~~l~~dv~~iesg 66 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAV----Y--DKDTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIESG 66 (93)
T ss_dssp CCSCCHHHHHHHHHHHHH----S--CTTCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHH----c--CCCCCchHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhhcC
Confidence 457999999999986442 1 1123479999999996 699999999999999999888744
No 13
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.72 E-value=5.5e-05 Score=61.31 Aligned_cols=93 Identities=15% Similarity=0.246 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcC
Q 022750 5 SSGTRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVR 84 (292)
Q Consensus 5 ~~~s~r~R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~ 84 (292)
++.+...++.....||..|...|++++... ..-+|..|+..+...=-.|+..||++||.||+..-
T Consensus 2 s~~~~~~~rr~r~~WT~EEd~~L~~gV~k~---------G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~------ 66 (105)
T 2aje_A 2 SHMLEDPQRRIRRPFSVAEVEALVQAVEKL---------GTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA------ 66 (105)
T ss_dssp -------CCCCCCSCCHHHHHHHHHHHHHH---------CSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT------
T ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHh---------CCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc------
Confidence 344555566666799999999999865421 12389999985421113899999999999998621
Q ss_pred CCCCCCCChhchhhc-CCCCCcHHHHHHHHHHhhh
Q 022750 85 SRTFPNSQTQTHTDC-FPPNFDSELFKAIHDFVMS 118 (292)
Q Consensus 85 ~~SYW~Ms~~eRke~-LP~~FD~EVFdALd~f~~~ 118 (292)
.+++..|+.. +|..|-.-|-+ |+++.+.
T Consensus 67 -----~~~p~~~rg~~~P~~~l~rv~~-~~~~~~~ 95 (105)
T 2aje_A 67 -----KISPQQRRGEPVPQELLNRVLN-AHGYWTQ 95 (105)
T ss_dssp -----TCCTTTTTCCSCCCHHHHHHHH-HHHHHHH
T ss_pred -----cCCcccccCCCCCHHHHHHHHH-HHHHHHH
Confidence 1233345566 88887776665 4555443
No 14
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.67 E-value=7.1e-05 Score=56.90 Aligned_cols=52 Identities=13% Similarity=0.367 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHH
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDE 77 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~d 77 (292)
...||..|-..|+++++.. ......+|..||.++- .|+..||+.+|.+|+.|
T Consensus 18 ~~~WT~eEd~~L~~al~~~------g~~~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQY------PRGSSDCWDKIARCVP----SKSKEDCIARYKLLVSG 69 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHS------CSSSHHHHHHHGGGCS----SSCHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHc------CCCCCchHHHHHHHcC----CCCHHHHHHHHHHHHHc
Confidence 3569999999999865421 1224679999999996 79999999999999865
No 15
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=4.5e-05 Score=56.14 Aligned_cols=48 Identities=25% Similarity=0.529 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
+...||..|-..|+.++.. - ...+|..||.+|- .|++.||+.+|.|.+
T Consensus 8 k~~~Wt~eED~~L~~~v~~---~------G~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMK---Y------GKNQWSRIASLLH----RKSAKQCKARWYEWL 55 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHH---T------CSSCHHHHHHHST----TCCHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHH---H------CcCCHHHHHHHhc----CCCHHHHHHHHHHHc
Confidence 4468999999999985442 1 1248999999986 799999999999865
No 16
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=0.00017 Score=53.63 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHH
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDE 77 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~d 77 (292)
...||..|-..|++++.. +....+...+|..||.++- .|++.||+.+|.+++..
T Consensus 8 ~~~WT~eEd~~L~~~v~~----~g~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIK----YPPEEVESRRWQKIADELG----NRTAKQVASQVQKYFIK 61 (75)
T ss_dssp SSCCCHHHHHHHHHHHHH----SCCCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHH----hCCCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence 458999999999985432 1112234579999999996 79999999999887754
No 17
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.62 E-value=0.0002 Score=59.43 Aligned_cols=58 Identities=17% Similarity=0.328 Sum_probs=44.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHH
Q 022750 11 TRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDE 77 (292)
Q Consensus 11 ~R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~d 77 (292)
..+.....||..|...|++++... ..-+|..|+..+...--.|+..||++||.||+..
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~---------G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHL---------GTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHH---------GGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHH---------CCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 344455689999999999865431 2248999999975433489999999999999964
No 18
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.62 E-value=0.00013 Score=54.05 Aligned_cols=51 Identities=18% Similarity=0.301 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHh
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYK 79 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYK 79 (292)
....||..|-..|++++.. ... +|..||.++- .|+..||+.+|.+++....
T Consensus 8 ~~~~WT~eEd~~l~~~~~~--------~G~--~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAK--------FGR--RWTKISKLIG----SRTVLQVKSYARQYFKNKV 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHH--------TCS--CHHHHHHHHS----SSCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHH--------HCc--CHHHHHHHcC----CCCHHHHHHHHHHHHHHHH
Confidence 3458999999999985443 112 8999999986 7999999999999976543
No 19
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.59 E-value=0.00017 Score=59.87 Aligned_cols=89 Identities=12% Similarity=0.263 Sum_probs=56.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcCCCCCCC
Q 022750 11 TRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRTFPN 90 (292)
Q Consensus 11 ~R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~~~SYW~ 90 (292)
.++.....||..|...|++++... ..-+|..|+......=-.|+..||++||.||+..- .+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~---------G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~-~~--------- 86 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHL---------GTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA-SI--------- 86 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHH---------SSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH-HS---------
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH---------CCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc-cC---------
Confidence 344456689999999999865421 12389999997542114899999999999998532 11
Q ss_pred CChhchhhc-CCCCCcHHHHHHHHHHhhhcC
Q 022750 91 SQTQTHTDC-FPPNFDSELFKAIHDFVMSKD 120 (292)
Q Consensus 91 Ms~~eRke~-LP~~FD~EVFdALd~f~~~r~ 120 (292)
++..|+.. .|..|+.-|.. ++.+++-+.
T Consensus 87 -~p~~kr~~~~p~e~~~~v~~-~h~~~g~~~ 115 (122)
T 2roh_A 87 -APQQRRGAPVPQELLDRVLA-AQAYWSVDS 115 (122)
T ss_dssp -CTTTCCCSSCCHHHHHHHHH-HHHHHHSSC
T ss_pred -CccccCCCCCCHHHHHHHHH-HHHHHhhHH
Confidence 11122333 56555555553 555555444
No 20
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=97.50 E-value=0.00022 Score=55.36 Aligned_cols=74 Identities=18% Similarity=0.300 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcCCCCCCCCChhchh
Q 022750 18 DWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRTFPNSQTQTHT 97 (292)
Q Consensus 18 ~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~~~SYW~Ms~~eRk 97 (292)
.||..|...|+.++... ..-+|..|+..-...=-.|+..||++||.||+..- .+ ++..|+
T Consensus 2 ~WT~eEd~~L~~gv~k~---------G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~-~~----------~p~~~~ 61 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL---------GTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA-SI----------APQQRR 61 (83)
T ss_dssp CCCHHHHHHHHHHHHHH---------CSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH-HS----------CGGGCC
T ss_pred CCCHHHHHHHHHHHHHH---------CCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc-cC----------Cccccc
Confidence 69999999999864421 12389999986211113899999999999998632 22 333344
Q ss_pred hc-CCCCCcHHHHHH
Q 022750 98 DC-FPPNFDSELFKA 111 (292)
Q Consensus 98 e~-LP~~FD~EVFdA 111 (292)
.. +|..|..-|-++
T Consensus 62 ~~~~p~~~~~rv~~~ 76 (83)
T 2ckx_A 62 GEPVPQDLLDRVLAA 76 (83)
T ss_dssp SSCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 55 887776666433
No 21
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.44 E-value=0.00049 Score=52.04 Aligned_cols=58 Identities=16% Similarity=0.291 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhhcC
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVR 84 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr~~ 84 (292)
..+.||..|-..|+++.+. +.. ....+|..||+++ | |++.||+.+|..|..+. .|..|
T Consensus 7 ~~~~WT~eE~k~fe~al~~----~p~--~t~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~d~-~~~~G 64 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVK----FPG--GTPGRWEKIAHEL---G--RSVTDVTTKAKQLKDSV-TCSPG 64 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHH----SCT--TCTTHHHHHHHHH---T--SCHHHHHHHHHHHHHSC-CCCSC
T ss_pred CCCCCCHHHHHHHHHHHHH----CCC--CCCcHHHHHHHHh---C--CCHHHHHHHHHHHHHhc-CccCC
Confidence 3568999999999986552 111 1247999999997 4 99999999999999884 45433
No 22
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.20 E-value=0.00043 Score=52.62 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
....||..|-..|+++... -..+|..||.+| .|+..||+.+|..|.
T Consensus 22 ~k~~wT~EED~~L~~l~~~----------~G~kW~~IA~~l-----gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIK----------HGNDWATIGAAL-----GRSASSVKDRCRLMK 67 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHH----------HSSCHHHHHHHH-----TSCHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHH----------HCCCHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 3458999999999985443 123599999998 699999999998774
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.19 E-value=0.00041 Score=56.16 Aligned_cols=50 Identities=28% Similarity=0.568 Sum_probs=39.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750 13 SQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD 76 (292)
Q Consensus 13 ~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~ 76 (292)
..+...||..|-..|+.++... ...|..||.+|- .|++.||+.+|.|.+.
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~----------G~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQH----------GSDWKMIAATFP----NRNARQCRDRWKNYLA 57 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHH----------TTCHHHHHHTCT----TCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHh----------CCCHHHHHHHcC----CCCHHHHHHHHhhhcc
Confidence 3445689999999999864431 127999999875 7999999999998763
No 24
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.07 E-value=0.001 Score=52.36 Aligned_cols=51 Identities=25% Similarity=0.447 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHh
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYK 79 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYK 79 (292)
....||..|-..|+.++.. . ..+|..||.+|- .|+.+||+.+|.+|+..-.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~--------~--G~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAE--------Y--GPKWNKISKFLK----NRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHH--------T--CSCHHHHHHHHS----SSCHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHH--------h--CcCHHHHHHHCC----CCCHHHHHHHHHHHHhhHH
Confidence 3468999999999985442 1 138999999985 7999999999999987643
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.06 E-value=0.00061 Score=53.63 Aligned_cols=46 Identities=24% Similarity=0.541 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
..||..|-..|+.++... ....|..||.+|- .|++.||+.+|.|.+
T Consensus 2 ~~Wt~eED~~L~~~v~~~---------g~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRY---------GAKDWIRISQLMI----TRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHH---------CSSCHHHHHHHTT----TSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHH---------CCCCHHHHhhhcC----CCCHHHHHHHHHHHH
Confidence 479999999999854421 1137999999986 799999999999865
No 26
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.11 E-value=9e-05 Score=57.53 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=41.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHH
Q 022750 12 RSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEY 78 (292)
Q Consensus 12 R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dY 78 (292)
..-....||..|-..|++++.. . ..+|..||.+|- .|+..||+.+|.+++..+
T Consensus 12 p~~~~~~WT~eEd~~l~~~~~~--------~--G~~W~~IA~~l~----gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 12 ENLYFQGWTEEEMGTAKKGLLE--------H--GRNWSAIARMVG----SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 3344568999999999985443 1 237999999986 799999999999887654
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.01 E-value=0.00034 Score=54.49 Aligned_cols=47 Identities=21% Similarity=0.597 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
...||..|-..|+.++... ....|..||.+|- .|++.||+.+|.|.+
T Consensus 4 k~~WT~eED~~L~~~v~~~---------g~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKY---------GPKRWSVIAKHLK----GRIGKQCRERWHNHL 50 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHH---------CTTCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHh---------CCCcHHHHhhhhc----CCCHHHHHHHHHhcc
Confidence 4579999999999854321 1136999999885 799999999999864
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.97 E-value=0.00078 Score=54.53 Aligned_cols=49 Identities=22% Similarity=0.533 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHH
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEY 78 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dY 78 (292)
...||..|-..|++++... ..+|..||.++- .|+..||+.+|.+|+..+
T Consensus 62 ~~~WT~eEd~~L~~~v~~~----------G~~W~~Ia~~l~----gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEY----------GRQWAIIAKFFP----GRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHH----------CSCHHHHHTTST----TCCHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHH----------CcCHHHHHHHcC----CCCHHHHHHHHHHHHHhc
Confidence 4579999999999864432 136999999875 799999999999998654
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.90 E-value=0.00079 Score=52.38 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD 76 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~ 76 (292)
....||..|-..|+.+.... ..+|..||.++- .|++.||+.+|.+|+.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~----------G~~W~~Ia~~l~----gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRL----------GNRWAEIAKLLP----GRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHH----------SSCHHHHHTTCT----TCCHHHHHHHHHHHTC
T ss_pred cccCCCHHHHHHHHHHHHHh----------CCCHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 34689999999999864431 137999998874 7999999999998864
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.79 E-value=0.001 Score=53.60 Aligned_cols=47 Identities=21% Similarity=0.560 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
...||..|-..|+.++.. - ....|..||.+|- .|++.||+.+|.|.+
T Consensus 27 k~~Wt~eED~~L~~~v~~---~------g~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQK---Y------GPKRWSDIAKHLK----GRIGKQCRERWHNHL 73 (128)
T ss_dssp CSCCCHHHHHHHHHHHHH---T------CSCCHHHHHHHSS----SCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHH---H------CCCCHHHHHHHhc----CCcHHHHHHHHHHhc
Confidence 457999999999975432 1 1136999999985 799999999999865
No 31
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.66 E-value=0.0011 Score=53.98 Aligned_cols=48 Identities=21% Similarity=0.485 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHH
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDE 77 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~d 77 (292)
...||..|-..|+.++.. -..+|..||.+|- .|+..||+.+|.+++..
T Consensus 54 ~~~Wt~eEd~~L~~~~~~----------~G~~W~~Ia~~l~----gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLK----------LGSKWSVIAKLIP----GRTDNAIKNRWNSSISK 101 (131)
T ss_dssp CSCCCHHHHHHHHHHHHH----------SCSCHHHHTTTST----TCCHHHHHHHHHHTTGG
T ss_pred CCCCCHHHHHHHHHHHHH----------HCcCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 457999999999975432 1136999999875 79999999999998753
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.41 E-value=0.00061 Score=55.42 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD 76 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~ 76 (292)
.+.||..|-..|+.++... ....|..||.+|- .|++.||+.+|.|.+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~---------g~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKEN---------GPQNWPRITSFLP----NRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHH---------CSCCGGGGTTSCT----TSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHh---------CcCCHHHHHHHHC----CCCHHHHHHHHhhccC
Confidence 3579999999999754421 1236999999884 7999999999998763
No 33
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.31 E-value=0.0021 Score=51.85 Aligned_cols=48 Identities=21% Similarity=0.469 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD 76 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~ 76 (292)
....||..|-..|+.+.... ..+|..||.++- .|+..||+.+|.+|+.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~----------G~~W~~Ia~~l~----gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRL----------GNRWAEIAKLLP----GRTDNAVKNHWNSTMR 125 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHH----------CSCHHHHGGGST----TCCHHHHHHHHHTTTT
T ss_pred ccccCCHHHHHHHHHHHHHH----------CcCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 34679999999999864431 137999999875 7999999999998863
No 34
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.11 E-value=0.017 Score=41.63 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=40.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHH
Q 022750 6 SGTRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS 73 (292)
Q Consensus 6 ~~s~r~R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~N 73 (292)
+++.+.| +....||..|...|+++.+. . .-.|..||.++- .|+..||...|..
T Consensus 3 ~~~~~~r-~~~~~WT~eE~~~F~~~~~~--------~--gk~w~~Ia~~l~----~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 3 SGSSGDR-QFMNVWTDHEKEIFKDKFIQ--------H--PKNFGLIASYLE----RKSVPDCVLYYYL 55 (61)
T ss_dssp CSCCCCC-SCCCSCCHHHHHHHHHHHHH--------S--TTCHHHHHHHCT----TSCHHHHHHHHHH
T ss_pred Ccccccc-ccCCCCCHHHHHHHHHHHHH--------h--CCCHHHHHHHcC----CCCHHHHHHHHHH
Confidence 3344444 56789999999999987653 1 237999998886 7999999998864
No 35
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.09 E-value=0.0049 Score=51.24 Aligned_cols=48 Identities=21% Similarity=0.606 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHH
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLL 75 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl 75 (292)
....||..|-..|+.++... ....|..||.+|- .|++.||+.+|.|++
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~---------g~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKY---------GPKRWSVIAKHLK----GRIGKQCRERWHNHL 104 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHH---------CSCCHHHHHHTST----TCCHHHHHHHHHHTT
T ss_pred CCCCCChHHHHHHHHHHHHh---------CcccHHHHHHHcC----CCCHHHHHHHHHHHh
Confidence 34689999999999754321 0135999999985 799999999999865
No 36
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.59 E-value=0.0071 Score=50.29 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD 76 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~ 76 (292)
....||..|-..|+++.... ..+|..||.++- .|+.+||+.+|..|+.
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~----------g~~W~~Ia~~l~----gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRL----------GNRWAEIAKLLP----GRTDNAIKNHWNSTMR 156 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHH----------CSCHHHHHTTST----TCCHHHHHHHHHTTTC
T ss_pred cccCCChHHHHHHHHHHHHH----------CCCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 45689999999999865431 248999999875 7999999999998763
No 37
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.98 E-value=0.041 Score=42.00 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD 76 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~ 76 (292)
...||..|-..|.+|.+.. . .....+|..||+.+- .|++.+|+.+|..|..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~----~--~~tp~rWe~IA~~V~----gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASL----P--KHKPGFWSEVAAAVG----SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHS----C--SSSSSHHHHHHHHTT----TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHC----C--CCCccHHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 3589999999999875531 1 124579999999986 5999999999988743
No 38
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=94.24 E-value=0.03 Score=51.55 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHH
Q 022750 17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDE 77 (292)
Q Consensus 17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~d 77 (292)
..||..|=..|+++++ . ..........|..||.+|- .|+.+||+.+|.+++..
T Consensus 9 ~~FT~EED~~Ile~v~---k-~Gn~r~ghk~W~~IAk~Lp----GRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 9 ASFTDEEDEFILDVVR---K-NPTRRTTHTLYDEISHYVP----NHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp CCCCHHHHHHHHHHHH---T-SGGGTTCSHHHHHHTTTST----TSCHHHHHHHHHHTTGG
T ss_pred CCCCHHHHHHHHHHHH---H-hCcCccccccHHHHHHHcC----CCCHHHHHHHHHHHHhh
Confidence 4899999999997433 2 2111123345999999988 89999999999997743
No 39
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=92.29 E-value=0.18 Score=37.55 Aligned_cols=51 Identities=18% Similarity=0.291 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHH
Q 022750 15 VGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLD 76 (292)
Q Consensus 15 R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~ 76 (292)
....||..|.-.|++.+.. .. .+|..|+..-.- =..|+...-++||.||+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k--------~G--~~W~~I~~~y~f-~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKT--------MG--NHWNSILWSFPF-QKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHH--------HC--SCHHHHHHHSCC-CTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHH--------Hh--HhHHHHHHhCCC-ccCcccchHHHHHHHHHh
Confidence 3458999999999987553 12 289999964321 229999999999999974
No 40
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=90.40 E-value=0.46 Score=43.46 Aligned_cols=46 Identities=17% Similarity=0.360 Sum_probs=36.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHH
Q 022750 14 QVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS 73 (292)
Q Consensus 14 ~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~N 73 (292)
.....||..|.+.|+++.+.. .-.|..||..+- .|+..||+.-|.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kY----------GKDW~~IAk~Vg----TKT~~QcKnfY~~ 176 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKY----------GRDFQAISDVIG----NKSVVQVKNFFVN 176 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHH----------SSCHHHHHHHHS----SCCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHH----------CcCHHHHHHHcC----CCCHHHHHHHHHH
Confidence 345699999999999865531 124999999986 8999999998863
No 41
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=87.94 E-value=1.3 Score=35.08 Aligned_cols=57 Identities=9% Similarity=0.182 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcC-CCCChhHHhHHHHHHHHHHhhhhc
Q 022750 17 PDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALD-VPRTANQCRRKWDSLLDEYKKMIV 83 (292)
Q Consensus 17 p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~G-v~Rs~~QCr~KW~NLl~dYKkIr~ 83 (292)
+.||..||.-|++..+. =..+|-.|++..--.+ ..||..+-+.++..++....+.++
T Consensus 31 ~~WTkEETd~Lf~L~~~----------fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRR----------FDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHH----------TTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHH----------hCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999985443 2458999999997665 379999999999999998887764
No 42
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=72.51 E-value=8.8 Score=30.77 Aligned_cols=60 Identities=8% Similarity=0.213 Sum_probs=48.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhhhh
Q 022750 12 RSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMI 82 (292)
Q Consensus 12 R~~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKkIr 82 (292)
.....--||+.|=.+++.+.+ ..-....-|..||..|. +|+++|-+.|..-|+.=|.+-.
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ-------~~G~s~~tFa~iA~~L~----Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQ-------EQGAQPHTFSVISQQLG----NKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHH-------HTTSCTTTHHHHHHHHS----SCCHHHHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeccccCHHHHHHHH-------hcCCChhHHHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHh
Confidence 344455899999988886533 33445778999999998 9999999999999999998864
No 43
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=71.66 E-value=10 Score=30.05 Aligned_cols=58 Identities=9% Similarity=0.180 Sum_probs=46.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcC-CCCChhHHhHHHHHHHHHHhhhhc
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALD-VPRTANQCRRKWDSLLDEYKKMIV 83 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~G-v~Rs~~QCr~KW~NLl~dYKkIr~ 83 (292)
.+.||..||.-|.+.-+. =..+|-+|++.--..+ ..|+..+=+.++..++...-+++.
T Consensus 30 ~~~WT~eETd~LfdLc~~----------fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRR----------FDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp BTTBCHHHHHHHHHHHHH----------TTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHH----------cCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 378999999999985332 2458999999976443 489999999999999988877763
No 44
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=67.85 E-value=8.6 Score=38.25 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=34.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHH
Q 022750 14 QVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRK 70 (292)
Q Consensus 14 ~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~K 70 (292)
.....||..|++.|+.+++.. .-.|..||+.+. .|+..||+.-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~y----------Gkdw~~IA~~Vg----TKT~~Qvk~f 420 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKY----------GRDFQAISDVIG----NKSVVQVKNF 420 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH----------TTCHHHHHHHHS----SCCHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHH----------CcCHHHHHHHhC----CCCHHHHHHH
Confidence 457899999999999865421 114999999987 8999999974
No 45
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=65.15 E-value=7 Score=28.02 Aligned_cols=51 Identities=4% Similarity=0.218 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHH-HhhhcCCCCChhHHhHHHHH
Q 022750 18 DWSSKEALILVNEIAAVEADCLKALSSYQKWKIISE-TCTALDVPRTANQCRRKWDS 73 (292)
Q Consensus 18 ~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae-~c~~~Gv~Rs~~QCr~KW~N 73 (292)
.+|..|=.+|+.-++.... .....+....|+.+++ .+ -.++..+||++|-+
T Consensus 4 ~FT~edD~~L~~~v~~~~~-~~~~~~Gn~iwk~la~~~~----~~HtwqSwRdRy~k 55 (59)
T 1fex_A 4 AFTDADDVAILTYVKENAR-SPSSVTGNALWKAMEKSSL----TQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCHHHHHHHHHHHHHTCC-STTTTTSSHHHHHHHHSCS----SSCCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcc-ccCCCccHHHHHHHHHhHC----CCCCHHHHHHHHHH
Confidence 6899999999974332211 1235678899999999 44 49999999999975
No 46
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=45.13 E-value=1.2 Score=34.26 Aligned_cols=47 Identities=15% Similarity=0.372 Sum_probs=32.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHH
Q 022750 14 QVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRK 70 (292)
Q Consensus 14 ~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~K 70 (292)
..+..||..|-..|-+|.+. + .....++|..||+.+- .|++.+|+..
T Consensus 18 ~ss~~WT~eE~K~FE~ALa~----y--p~~tpdRWekIA~~Vp----GKT~eEVk~h 64 (74)
T 4eef_G 18 GSGRPWKFSENIAFEIALSF----T--NKDTPDRWKKVAQYVK----GRTPEEVKKH 64 (74)
T ss_dssp ----CCCTTHHHHHHHHTSS----S--CSSCCSSSTTTGGGSC----SSCHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHH----C--CCCCCcHHHHHHHHcC----CCCHHHHHHH
Confidence 34568999999999986442 1 2234689999998876 5999999764
No 47
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=40.73 E-value=2.7 Score=29.94 Aligned_cols=13 Identities=38% Similarity=0.838 Sum_probs=12.0
Q ss_pred CCCCCcHHHHHHH
Q 022750 100 FPPNFDSELFKAI 112 (292)
Q Consensus 100 LP~~FD~EVFdAL 112 (292)
||++.|.|||.+|
T Consensus 12 lP~~VD~eVF~~L 24 (48)
T 2kwv_A 12 LPEGVDQEVFKQL 24 (48)
T ss_dssp SCTTCCGGGTTTS
T ss_pred CCCCCCHHHHHHC
Confidence 9999999999876
No 48
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=44.46 E-value=6.7 Score=29.92 Aligned_cols=53 Identities=17% Similarity=0.379 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHhHHHHHHHHHHhh
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKK 80 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr~KW~NLl~dYKk 80 (292)
.--||+.|=.+++.+ |....+...-|..||..| +|+++|-..|..-|+.=|++
T Consensus 14 vvlWTReeDR~IL~~-------cq~~G~s~~tfa~iA~~L-----nks~~QV~~RF~~Lm~Lf~k 66 (70)
T 2lr8_A 14 IILWTRNDDRVILLE-------CQKRGPSSKTFAYLAAKL-----DKNPNQVSERFQQLMKLFEK 66 (70)
Confidence 346888888777753 333344568999999877 69999999999999988875
No 49
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=36.56 E-value=32 Score=26.56 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=31.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHHhhhcCCCCChhHHh
Q 022750 14 QVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCR 68 (292)
Q Consensus 14 ~R~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~c~~~Gv~Rs~~QCr 68 (292)
+..-.||..|.-.+.++... -.-.|..|++++- .|+..||-
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~----------~gK~F~~Ia~~l~----~Kt~~~cV 81 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQ----------HPKNFGLIASFLE----RKTVAECV 81 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHH----------STTCHHHHHHTCT----TCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH----------cCCCHHHHHHHcC----CCCHHHHH
Confidence 34568999999999976543 1235889988875 89999996
No 50
>2wtg_A Globin-like protein; metal-binding, oxygen transport; HET: HEM; 1.50A {Caenorhabditis elegans} PDB: 2wth_A*
Probab=32.17 E-value=30 Score=28.84 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=27.7
Q ss_pred ccCccch-hhHHHHHhhhHHHHHHHHHHHHHhHhhhhh
Q 022750 252 LNNVQDL-ESEFVRRQGDKLIACLGEIVNTLNQFTDHV 288 (292)
Q Consensus 252 ~~n~e~~-~~d~~R~qGd~lI~~L~~i~n~l~q~~~~~ 288 (292)
.++.++. ...-.+.||.+|+..|..+|+.|+.+..+.
T Consensus 54 ~v~~~d~~~s~~f~~q~~rl~~aL~~~v~~lDd~~~L~ 91 (159)
T 2wtg_A 54 KYTADDVKKSERFDKQGQRILLACHLLANVYTNEEVFK 91 (159)
T ss_dssp TCCHHHHHTCHHHHHHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred cCCHHhhhcCHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4454553 344568999999999999999998876543
No 51
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.55 E-value=75 Score=22.56 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhccChHHhHHHHHHH-hhhcCCCCChhHHhH
Q 022750 16 GPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISET-CTALDVPRTANQCRR 69 (292)
Q Consensus 16 ~p~WT~~ETLvLI~ak~ave~d~~rs~Sa~eKW~~Vae~-c~~~Gv~Rs~~QCr~ 69 (292)
.+.||..|...+.++.+.- .--|..|+.. +- .|+..||-.
T Consensus 9 ~~~WT~eE~~~Fe~~l~~y----------GKdf~~I~~~~v~----~Kt~~~~v~ 49 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQY----------GKNFFRIRKELLP----NKETGELIT 49 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHT----------CSCHHHHHHHSCT----TSCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh----------CccHHHHHHHHcC----CCcHHHHHH
Confidence 3799999999999865531 1138899874 55 799999964
No 52
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=28.39 E-value=32 Score=27.04 Aligned_cols=31 Identities=26% Similarity=0.632 Sum_probs=24.7
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHhHhhhhhh
Q 022750 259 ESEFVRRQGDKLIACLGEIVNTLNQFTDHVQ 289 (292)
Q Consensus 259 ~~d~~R~qGd~lI~~L~~i~n~l~q~~~~~q 289 (292)
...-.+.||.+++..|+.+|+.|..|...|.
T Consensus 51 ~s~~~~~h~~~v~~al~~~v~~ld~l~~~l~ 81 (141)
T 1wmu_A 51 DSEQIRHHGKKVVGALGDAVKHIDNLSATLS 81 (141)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTSHHHHTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence 3455679999999999999999887765543
No 53
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=26.14 E-value=37 Score=26.91 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=23.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhHhhhhhh
Q 022750 261 EFVRRQGDKLIACLGEIVNTLNQFTDHVQ 289 (292)
Q Consensus 261 d~~R~qGd~lI~~L~~i~n~l~q~~~~~q 289 (292)
.-.+.||.+|++.|+.+|+.|..|...|.
T Consensus 53 ~~~~~h~~~v~~al~~~v~~ld~l~~~l~ 81 (141)
T 2r80_A 53 AQIKGHGKKVAEALVEAANHIDDIAGALS 81 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45679999999999999999888765543
No 54
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=25.39 E-value=39 Score=26.51 Aligned_cols=29 Identities=24% Similarity=0.549 Sum_probs=23.9
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHhHhhhhh
Q 022750 260 SEFVRRQGDKLIACLGEIVNTLNQFTDHV 288 (292)
Q Consensus 260 ~d~~R~qGd~lI~~L~~i~n~l~q~~~~~ 288 (292)
..-.+.||.+|+..|+.+|+.|..|...|
T Consensus 53 s~~~~~h~~~v~~~l~~~v~~ld~l~~~l 81 (142)
T 1jeb_A 53 SAQLRAHGSKVVAAVGDAVKSIDDIGGAL 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 35578999999999999999988776554
No 55
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=24.98 E-value=41 Score=26.52 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=24.3
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHhHhhhhhh
Q 022750 259 ESEFVRRQGDKLIACLGEIVNTLNQFTDHVQ 289 (292)
Q Consensus 259 ~~d~~R~qGd~lI~~L~~i~n~l~q~~~~~q 289 (292)
...-.+.||.+++..|+.+|+.|..|...|.
T Consensus 52 ~s~~~~~h~~~v~~al~~~v~~ld~l~~~l~ 82 (142)
T 3d1k_A 52 GSPNIKAHGKKVMGGIALAVSKIDDLKTGLM 82 (142)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3345679999999999999998887665543
No 56
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Probab=24.61 E-value=41 Score=26.63 Aligned_cols=30 Identities=13% Similarity=0.334 Sum_probs=24.2
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHhHhhhhhh
Q 022750 260 SEFVRRQGDKLIACLGEIVNTLNQFTDHVQ 289 (292)
Q Consensus 260 ~d~~R~qGd~lI~~L~~i~n~l~q~~~~~q 289 (292)
..-.+.||.+++..|+.+|+.|..|...|.
T Consensus 54 n~~~~~h~~~v~~al~~~v~~ld~l~~~l~ 83 (143)
T 1xq5_A 54 SAPVNKHGKTIMGGIVDAVASIDDLNAGLL 83 (143)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTTCHHHHTH
T ss_pred CHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence 445689999999999999999887765543
No 57
>2r80_B Hemoglobin subunit beta; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3dhr_B* 3mju_B* 1faw_B* 3k8b_B* 2qmb_B* 3eok_B* 1a4f_B* 1c40_B* 1hv4_B* 2zfb_B* 3mjp_B* 1hbr_B* 3fs4_B* 3a59_B* 1wmu_B* 1v75_B* 2z6n_B* 3at5_B* 3at6_B*
Probab=23.86 E-value=43 Score=26.52 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=23.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhHhhhhhh
Q 022750 261 EFVRRQGDKLIACLGEIVNTLNQFTDHVQ 289 (292)
Q Consensus 261 d~~R~qGd~lI~~L~~i~n~l~q~~~~~q 289 (292)
.-.+.||.+++..|+.+|+.|..|..+|.
T Consensus 58 ~~~~~h~~~v~~~l~~~v~~ld~l~~~l~ 86 (146)
T 2r80_B 58 PNVKAHGKKVLTSFGDAVKNLDNIKGTFA 86 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence 44678999999999999998887765543
No 58
>1k3e_A CEST; chaperone, secretion, type III, intimin receptor; 2.80A {Escherichia coli} SCOP: d.198.1.1
Probab=23.51 E-value=52 Score=28.07 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHhHhhhhhhh
Q 022750 268 DKLIACLGEIVNTLNQFTDHVQE 290 (292)
Q Consensus 268 d~lI~~L~~i~n~l~q~~~~~q~ 290 (292)
.+|..+|+.|||.+++|...+|+
T Consensus 107 ~~l~~~Le~fv~~~e~l~~~l~~ 129 (156)
T 1k3e_A 107 EKLENEIEVVVKSMENLYLVLHN 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 48899999999999999999986
No 59
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=22.64 E-value=48 Score=25.95 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=23.9
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHhHhhhhh
Q 022750 259 ESEFVRRQGDKLIACLGEIVNTLNQFTDHV 288 (292)
Q Consensus 259 ~~d~~R~qGd~lI~~L~~i~n~l~q~~~~~ 288 (292)
...-.+.||.+++..|+.+|+.|+.+..++
T Consensus 51 ~~~~~~~h~~~v~~al~~~v~~ld~l~~~l 80 (141)
T 2w72_C 51 GSAQVKGQGKKVADALTNAVAHVDDMPNAL 80 (141)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTSHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHhHhhhHHHH
Confidence 345578999999999999999888765544
No 60
>3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A*
Probab=22.36 E-value=44 Score=26.46 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=24.2
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHhHhhhhhh
Q 022750 259 ESEFVRRQGDKLIACLGEIVNTLNQFTDHVQ 289 (292)
Q Consensus 259 ~~d~~R~qGd~lI~~L~~i~n~l~q~~~~~q 289 (292)
...-.+.||.++++.|+.+|+.|..|...|.
T Consensus 53 ~s~~~~~h~~~v~~al~~~v~~ld~l~~~l~ 83 (143)
T 3bom_A 53 GSAPVKKHGITIMNQIDDCVGHMDDLFGFLT 83 (143)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 3445679999999999999998877655543
No 61
>3rx6_A Polarity suppression protein; all alpha protein, transcription termination inhibitor, RHO capsid decoration protein of bacteriophage P4; 2.04A {Enterobacteria phage P4} PDB: 4dvd_A
Probab=21.40 E-value=55 Score=29.06 Aligned_cols=37 Identities=22% Similarity=0.464 Sum_probs=32.3
Q ss_pred ccchhhHHHHHhhhHHHHHHHHHHHHHhHhhhhhhhc
Q 022750 255 VQDLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQEC 291 (292)
Q Consensus 255 ~e~~~~d~~R~qGd~lI~~L~~i~n~l~q~~~~~q~c 291 (292)
+.+.=.||-..-|+.||+.|+=+..|+.+-+.+|.+|
T Consensus 81 ~~~~l~dFMq~hG~aL~~aLAp~lmg~g~q~~~v~~~ 117 (190)
T 3rx6_A 81 IRDRLNDFMQQHGTALAAALAPELMGYSELTAIARNC 117 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHTTGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccccchHHHHHH
Confidence 4666779999999999999999999999888888766
No 62
>3d1k_B Hemoglobin subunit beta-1/2; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 1t1n_B* 1la6_B* 3nfe_B* 3ng6_B* 2h8f_B* 1pbx_B* 1s5x_B* 1s5y_B* 1hbh_B* 2h8d_B* 2peg_B* 3gkv_B* 3gqg_B*
Probab=21.32 E-value=59 Score=25.87 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=23.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhHhhhhhh
Q 022750 261 EFVRRQGDKLIACLGEIVNTLNQFTDHVQ 289 (292)
Q Consensus 261 d~~R~qGd~lI~~L~~i~n~l~q~~~~~q 289 (292)
.-.+.||.+++..|+.+|+.|..|...|.
T Consensus 58 ~~~~~h~~~v~~al~~~v~~ld~l~~~l~ 86 (146)
T 3d1k_B 58 ANVAAHGIKVLHGLDRGMKNMDNIADAYT 86 (146)
T ss_dssp HHHHHHHHHHHHHTHHHHHTGGGHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45679999999999999998888766553
No 63
>3mkb_A Hemoglobin subunit alpha; oxygen affinity, shortfin MAK storage, oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus} SCOP: a.1.1.2 PDB: 1gcv_A* 1gcw_A*
Probab=20.67 E-value=52 Score=26.46 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=37.4
Q ss_pred HHHHHHHHhHHHHHHHHHh-h--ccccccc---ccCccchhhHHHHHhhhHHHHHHHHHHHHHhHhhhhhh
Q 022750 225 MMVAKLQENAELIHAIVAE-S--ADYSDAD---LNNVQDLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQ 289 (292)
Q Consensus 225 ~~~~kl~~na~~I~ai~~e-~--~d~~~~~---~~n~e~~~~d~~R~qGd~lI~~L~~i~n~l~q~~~~~q 289 (292)
....++..|++.|.+-+=. + ..-+... ..|+.. ..--.+.||.+++..|+.+|+.|..|..+|.
T Consensus 12 ~~w~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~~~~-~s~~~~aHg~~v~~al~~~v~~ld~l~~~l~ 81 (140)
T 3mkb_A 12 AIAKILASTPEAYGAEALARLFATHPGAKSYFDYADYSA-AGAKVQLHGGKVIRAVVSAAEHDDDLHAHLM 81 (140)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHCGGGGGGCCCSCCST-TCHHHHHHHHHHHHHHHHHHTTTTTHHHHTH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHChHHHhhCccccCCC-CCHHHHHHHHHHHHHHHHHHHChhhHHHHHH
Confidence 3455676677766543321 1 1111111 113332 3345689999999999999998887766554
No 64
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=20.43 E-value=57 Score=25.94 Aligned_cols=31 Identities=19% Similarity=0.489 Sum_probs=24.4
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHhHhhhhhh
Q 022750 259 ESEFVRRQGDKLIACLGEIVNTLNQFTDHVQ 289 (292)
Q Consensus 259 ~~d~~R~qGd~lI~~L~~i~n~l~q~~~~~q 289 (292)
...-.+.||.+++..|+.+|+.|..|...|.
T Consensus 54 ~~~~~~~h~~~v~~al~~~v~~ld~l~~~l~ 84 (144)
T 1spg_A 54 QTPQVRNHGAVIMAAVGKAVKSIDNLVGGLS 84 (144)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 3455689999999999999998887665543
Done!