BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>022751
MRLQQFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPER
LRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDV
FLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLF
DPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQP
GVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIYI

High Scoring Gene Products

Symbol, full name Information P value
AT1G50450 protein from Arabidopsis thaliana 7.9e-101

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  022751
        (292 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2008041 - symbol:AT1G50450 species:3702 "Arabi...  1000  7.9e-101  1


>TAIR|locus:2008041 [details] [associations]
            symbol:AT1G50450 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016491
            "oxidoreductase activity" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] InterPro:IPR005097 Pfam:PF03435 InterPro:IPR016040
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
            Gene3D:3.40.50.720 GO:GO:0016491 eggNOG:COG1748 GO:GO:0009534
            EMBL:AY039543 EMBL:AY097361 IPI:IPI00520569 RefSeq:NP_564570.1
            UniGene:At.38025 UniGene:At.48296 ProteinModelPortal:Q94BZ0
            SMR:Q94BZ0 IntAct:Q94BZ0 STRING:Q94BZ0 PaxDb:Q94BZ0 PRIDE:Q94BZ0
            EnsemblPlants:AT1G50450.1 GeneID:841467 KEGG:ath:AT1G50450
            TAIR:At1g50450 HOGENOM:HOG000012826 InParanoid:Q94BZ0 OMA:IFPGISN
            PhylomeDB:Q94BZ0 ProtClustDB:CLSN2688642 Genevestigator:Q94BZ0
            Uniprot:Q94BZ0
        Length = 428

 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 187/252 (74%), Positives = 217/252 (86%)

Query:    41 VMAAELVRVARNESKGEPERLRFSXXXXXXXXXXPTILATSFLLLGEEVVAYNKGEEITL 100
             VMAAE+V  AR+E KG+PE+LRFS          PTILATSFLLLGEEV AY +GE++ L
Sbjct:   177 VMAAEMVAAARSEDKGKPEKLRFSYYTAGTGGAGPTILATSFLLLGEEVTAYKQGEKVKL 236

Query:   101 EPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQR 160
              PYSGM++VDFGKGI ++DV+LLNLPEVRS  EVLGVPTV ARFGTAPFFWNWGM  M +
Sbjct:   237 RPYSGMITVDFGKGIRKRDVYLLNLPEVRSTHEVLGVPTVVARFGTAPFFWNWGMEIMTK 296

Query:   161 LFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSV 220
             L P+E LRDR+KVQQ+V+LFDPVVRA DG AGERVSMRVDLEC+DGR TVG+FSH++LSV
Sbjct:   297 LLPSEVLRDRTKVQQMVELFDPVVRAMDGFAGERVSMRVDLECSDGRTTVGLFSHKKLSV 356

Query:   221 SVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVE 280
             SVG + AAFV A+LEG+TQPGVWFPEEP+GIA+EAREVLLKRASQGT NF++NK PWMVE
Sbjct:   357 SVGVSTAAFVAAMLEGSTQPGVWFPEEPQGIAVEAREVLLKRASQGTFNFILNKPPWMVE 416

Query:   281 TEPKELGLGIYI 292
             TEPKE+ LGIY+
Sbjct:   417 TEPKEVVLGIYV 428


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      292       282   0.00083  115 3  11 22  0.44    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  183 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.67u 0.10s 20.77t   Elapsed:  00:00:03
  Total cpu time:  20.67u 0.10s 20.77t   Elapsed:  00:00:03
  Start:  Mon May 20 16:21:23 2013   End:  Mon May 20 16:21:26 2013

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