Query 022751
Match_columns 292
No_of_seqs 115 out of 356
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1748 LYS9 Saccharopine dehy 99.9 7.8E-28 1.7E-32 228.4 11.7 227 15-253 106-364 (389)
2 PF03435 Saccharop_dh: Sacchar 99.9 9.9E-22 2.1E-26 188.1 8.1 229 5-249 103-366 (386)
3 COG3268 Uncharacterized conser 99.3 8.5E-13 1.9E-17 121.9 4.7 223 14-253 119-366 (382)
4 PLN02819 lysine-ketoglutarate 98.7 1.4E-07 3E-12 100.2 12.4 116 14-142 690-823 (1042)
5 KOG2733 Uncharacterized membra 93.1 0.05 1.1E-06 51.8 1.8 59 210-273 357-420 (423)
6 PF08043 Xin: Xin repeat; Int 39.8 14 0.0003 19.2 0.6 11 275-285 6-16 (16)
7 cd03174 DRE_TIM_metallolyase D 22.7 72 0.0016 28.3 2.7 40 37-87 204-244 (265)
8 PF00682 HMGL-like: HMGL-like 22.5 54 0.0012 28.9 1.8 38 37-85 195-233 (237)
9 COG3499 Phage protein U [Gener 21.5 77 0.0017 26.3 2.3 43 238-291 51-93 (147)
10 cd07941 DRE_TIM_LeuA3 Desulfob 16.1 1.4E+02 0.0031 27.1 3.1 37 38-85 210-247 (273)
No 1
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=99.95 E-value=7.8e-28 Score=228.42 Aligned_cols=227 Identities=18% Similarity=0.159 Sum_probs=182.9
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcchhhhhHHHHHHHHhhcCCCCCceeEEEEEecCCCCCC------ch--hhhhhhhhcc
Q 022751 15 FLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGGAG------PT--ILATSFLLLG 86 (292)
Q Consensus 15 ~~~~~~~~~~~~~g~~~~g~~PGlSn~lA~~aa~~l~~~~~~~ve~Idi~~~~~g~g~~G------~~--~~~~~l~~l~ 86 (292)
|.+++.+...++++...+|++||+||++|++++++++ |++++|||++ .+.++++ .. ++|++|.++.
T Consensus 106 ~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~----~~i~si~iy~--g~~g~~~~~~l~ya~tws~e~~l~e~~ 179 (389)
T COG1748 106 WKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELF----DEIESIDIYV--GGLGEHGDNPLGYATTWSPEINLREYT 179 (389)
T ss_pred hhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhh----ccccEEEEEE--ecCCCCCCCCccceeeecHHHhHHHhc
Confidence 7777777777777777788899999999999996554 6999999998 4555555 33 7899999999
Q ss_pred ceeeeeccCceEEeecCCceeeeecCCCCCcceeEeecCccccccccccc-cceeeeeccCC-ccchhhhHHHhhhcCch
Q 022751 87 EEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLG-VPTVSARFGTA-PFFWNWGMVTMQRLFPA 164 (292)
Q Consensus 87 ~p~~v~~dGr~~~v~~~s~~r~vdFp~~~G~r~~~~~~~pD~~Tlp~~~g-i~~V~~~~g~~-~~~~~~ll~~l~~lg~~ 164 (292)
.|+.+|+||+|++++|+++.+.++||. +|...+|.++|+|+.||.++++ +.++++|++|. +.++++ +++|+.+|
T Consensus 180 ~p~~~~~~Gk~~~v~~~~~~~~~~~~~-~G~~~~y~~~~~el~sL~~~i~~~~~~~~~~t~r~~g~~~~-i~~L~~lG-- 255 (389)
T COG1748 180 RPARYWENGKWVEVDPLEEREVFEFPV-IGYGDVYAFYHDELRSLVKTIPGVVRTRFEMTFRYPGHLEV-IKALRDLG-- 255 (389)
T ss_pred CceEEEeCCEEEEecCcccccccccCC-CCceeEEecCCccHHHHHHhCcccceeeEEeecCcccHHHH-HHHHHHcC--
Confidence 999999999999999999999999996 7999999999999999999997 78899999999 888887 57888886
Q ss_pred hhccchh--------hHHHHHHhhhhhhhhhcccccceeeeeeeeee-cCCCceeee---ee---------eeeeeEeeh
Q 022751 165 EYLRDRS--------KVQQLVQLFDPVVRAFDGIAGERVSMRVDLEC-TDGRNTVGI---FS---------HRRLSVSVG 223 (292)
Q Consensus 165 ~LL~~~~--------~~~~la~l~~~l~~~~~~~~g~~~~m~v~v~g-~~G~~~~~~---~~---------~~~~~~~Tg 223 (292)
+++.++ +.++++++........+.+ .+-+.|.+.|+| |||+....+ ++ +..++++||
T Consensus 256 -ll~~~~v~~~~~i~p~eflk~vl~~~~s~~~~~-~d~t~i~v~v~G~kdG~~~~~~y~~~~~~~~~~~~~~~ais~ttg 333 (389)
T COG1748 256 -LLSREPVKVQQEIVPLEFLKAVLPDPLSLAPDY-KDVTVIGVEVKGTKDGRDKTVFYNVKDHAEAYSEVGSSAISYTTG 333 (389)
T ss_pred -CCcccccccccccchHHHHHHhcccccccCCCc-CceEEEEEEEEEEEcCeeeEEEecchhhHHHhhccccceeehhcc
Confidence 665542 2455655443332222222 444579999995 588877332 22 335789999
Q ss_pred hHHHHHHHHHHhCC-CCCcccccCCCCccch
Q 022751 224 TAIAAFVLAVLEGA-TQPGVWFPEEPEGIAI 253 (292)
Q Consensus 224 ~~aa~~A~~ll~G~-~~~Gv~~PE~~~g~~~ 253 (292)
.+|++.|+.|+.|+ ..+||++||++...+-
T Consensus 334 ~pa~~~a~ll~~g~~~~~Gv~~~E~l~~~~~ 364 (389)
T COG1748 334 VPAAIGAELLAEGEWETPGVVNPEELGPDPF 364 (389)
T ss_pred ccHHHHHHHHHcCCCCcCcEecHHHhCCChh
Confidence 99999999999999 8999999999996663
No 2
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=99.85 E-value=9.9e-22 Score=188.13 Aligned_cols=229 Identities=20% Similarity=0.198 Sum_probs=165.1
Q ss_pred hhhhhhHHhhhhhhhhhHHHHHHHHHHHhhhcchhhhhHHHHHHHHhhcCCCCCceeEEEEEecCC-------CC---CC
Q 022751 5 QFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRFSYYTAGT-------GG---AG 74 (292)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~PGlSn~lA~~aa~~l~~~~~~~ve~Idi~~~~~g~-------g~---~G 74 (292)
+.+++| +=.++.+...+.+||| +||+||+++++++++++ ...++++++++.+ ++. .+ ..
T Consensus 103 ~~~~l~---~~a~~~g~~~l~~~G~-----~PGl~~~~a~~~~~~~~-~~~~~v~~~~~~~--g~~~~p~~~~~~~~~~~ 171 (386)
T PF03435_consen 103 EMLALD---EEAKEAGVTALPGCGF-----DPGLSNLLARYAADELD-AEGDEVESVDIYV--GGLPAPEAPDNPLGYKF 171 (386)
T ss_dssp HHHHCH---HHHHHTTSEEE-S-BT-----TTBHHHHHHHHHHHHHH-HTTHEEEEEEEEE--EEEEEGCG--TTTSEEB
T ss_pred HHHHHH---HHHHhhCCEEEeCccc-----ccchHHHHHHHHHHHhh-hhcccceEEEEEE--ccccCCCCCCCCcccce
Confidence 445555 6666778888888875 89999999999998887 5666888888665 444 11 13
Q ss_pred chhhhhhhhhccceeeeeccCceEEeecCCceeeeecCCCCCcceeEeecCccccccccccc-cc---eeeeeccCCccc
Q 022751 75 PTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLG-VP---TVSARFGTAPFF 150 (292)
Q Consensus 75 ~~~~~~~l~~l~~p~~v~~dGr~~~v~~~s~~r~vdFp~~~G~r~~~~~~~pD~~Tlp~~~g-i~---~V~~~~g~~~~~ 150 (292)
.-+++..++++..|+.+|+||+++++++++..++++||.++++..+|.+.++|..++++++. ++ ++..+....+.+
T Consensus 172 ~ws~~~~l~e~~~~~~~~~~G~~~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~ 251 (386)
T PF03435_consen 172 TWSPEGVLEEYSPPARVYRDGKWVEVPPFSEEERVDFPYPIGPGGAYEAFHPEDSTLTRSFYGLPEVRNVIRKTLRYPGF 251 (386)
T ss_dssp SS-HHHHHHHHCS-EEEEETTEEEEEETTTTCCCETEEE-SSTTECEEEEEECBGTTHHHHTT-TTTSEEEEEEEEETTH
T ss_pred eeeehhhHHhhcccceEeeCCEEEEecCccccceeeeeeEecccceeeeecCcCCceeeEeecCCCcccEEEEEeeEhhH
Confidence 33667778888899999999999999999999999999989999999999999999999885 33 788898889999
Q ss_pred hhhhHHHhhhcCchhhccchh------hHHHHHHhhhhhhhhhcccccceeeeeeeeee--cCCCceeeee--e------
Q 022751 151 WNWGMVTMQRLFPAEYLRDRS------KVQQLVQLFDPVVRAFDGIAGERVSMRVDLEC--TDGRNTVGIF--S------ 214 (292)
Q Consensus 151 ~~~ll~~l~~lg~~~LL~~~~------~~~~la~l~~~l~~~~~~~~g~~~~m~v~v~g--~~G~~~~~~~--~------ 214 (292)
++.+. +|..++ +++... +.+.++.+.....+..+ -..+...|+++++| ++|++..... .
T Consensus 252 ~~~~~-~l~~lg---l~~~~~~~~~~~p~~~l~~~l~~~~~~~~-~~~d~~~~~v~v~G~~~~G~~~~~~~~~~~~~~~~ 326 (386)
T PF03435_consen 252 LNVMK-LLKDLG---LLSEEPVYVYVSPRDLLAALLEKRLRPGP-GERDMVVLRVEVEGWDKDGKPVRRTSYLVYPSGDP 326 (386)
T ss_dssp HHHHH-HHHHTT---TTSHCBEGGGSCHHHHHHHHHHHHSCTTT-T-SEEEEEEEEEEEEETTCEEEEEEEEEEEEEEEC
T ss_pred HHHHH-HHHhhc---ccCCccccchhhHHHHHHhhChhhcCCcc-cccCceeEEEEEEEEeCCCCEEEEEEeeceecccc
Confidence 88754 777775 555433 13333333222211111 23455678888885 6888772211 1
Q ss_pred ----eeeeeEeehhHHHHHHHHHHhCC-CCCcccccCCCC
Q 022751 215 ----HRRLSVSVGTAIAAFVLAVLEGA-TQPGVWFPEEPE 249 (292)
Q Consensus 215 ----~~~~~~~Tg~~aa~~A~~ll~G~-~~~Gv~~PE~~~ 249 (292)
...++++||.+++++|+++++|+ ..+||++||++.
T Consensus 327 ~~~~~~~m~~~tg~~~ai~a~ll~~g~~~~~GV~~PE~~~ 366 (386)
T PF03435_consen 327 IETGGSAMARTTGIPAAIAAQLLADGEITRPGVVPPEAAF 366 (386)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHTTSSH-SEEE-SHHCC
T ss_pred cCCCCCccHHHhhHHHHHHHHHHHCCCcCCCeEECHHHhC
Confidence 23578899999999999999999 699999999984
No 3
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=8.5e-13 Score=121.87 Aligned_cols=223 Identities=17% Similarity=0.087 Sum_probs=148.2
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcchhhh-hHHHHHHHHhhcCCCCCceeEEEEEecCCC-CCCchhhhhhhhhccceeee
Q 022751 14 SFLRSEKLYLLLCCFWILILTDICYMTV-MAAELVRVARNESKGEPERLRFSYYTAGTG-GAGPTILATSFLLLGEEVVA 91 (292)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~~g~~PGlSn~-lA~~aa~~l~~~~~~~ve~Idi~~~~~g~g-~~G~~~~~~~l~~l~~p~~v 91 (292)
-=++..+..+..|||||.+++ || ++..+.+.++ ..-.++-..++.. -...+ +.+.+++.+..+.+......
T Consensus 119 ~~A~~~Ga~Ii~~cGFDsIPs-----Dl~v~~l~~~~~~-d~~~~~~~t~l~l-~s~t~~g~S~GTaat~~e~l~~~~~~ 191 (382)
T COG3268 119 AQAADAGARIIPGCGFDSIPS-----DLGVYALLKQALP-DGTEELIATHLAL-GSFTGSGISGGTAATSVEGLATAGKD 191 (382)
T ss_pred HHHHhcCCEEeccCCCCcCcc-----chHHHHHHHhhCc-ccccchhhhheee-eecccCCcccccHHHHHHHHHhccCC
Confidence 446778888999999999999 77 5555554433 2222333445554 12233 56788899999999999999
Q ss_pred eccCceEEeecCCceee---eecCCCCCcceeEeecCccccccccccccc---eeeeeccCCccchhhhHHHhhhcCchh
Q 022751 92 YNKGEEITLEPYSGMLS---VDFGKGIGRKDVFLLNLPEVRSAREVLGVP---TVSARFGTAPFFWNWGMVTMQRLFPAE 165 (292)
Q Consensus 92 ~~dGr~~~v~~~s~~r~---vdFp~~~G~r~~~~~~~pD~~Tlp~~~gi~---~V~~~~g~~~~~~~~ll~~l~~lg~~~ 165 (292)
+++||.+.+|..-..++ +|||.+.|.+..-.++||++.+..++..|+ ++..|.=..|-++- ....+.++ ..
T Consensus 192 ~~~gr~~~~P~~~~~~r~~~iDf~~~rg~~~a~~~~Wg~V~a~~~t~iv~rsn~l~~~~~~~pv~~~-a~~~~~~~--~~ 268 (382)
T COG3268 192 PEAGRLLRVPYALKKRRGAEIDFPSRRGRRLAPTLPWGFVAAAFNTTIVPRSNALEVWIYAAPVLAL-AGRGIGAL--LP 268 (382)
T ss_pred cccCceeccCceeccCCCCCCCcccCCccccCcccCchhhhhhhccCccccccceeeeechhHHHHH-HHhccchh--hh
Confidence 99999999999988888 999987899999999999999999999998 77776543332221 11122221 12
Q ss_pred hccchhhHHHHHHhhhhhhhhhcc-----cccc--------eeeeeeeeeecCCCceeeeeeeeeeeEeehhHHHHH-HH
Q 022751 166 YLRDRSKVQQLVQLFDPVVRAFDG-----IAGE--------RVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAF-VL 231 (292)
Q Consensus 166 LL~~~~~~~~la~l~~~l~~~~~~-----~~g~--------~~~m~v~v~g~~G~~~~~~~~~~~~~~~Tg~~aa~~-A~ 231 (292)
++.+.. +.+++.++.++ -.|+ ...++.+.+...|.+..+.+.+.+-|+.|++-.+.. ..
T Consensus 269 ll~~~~-------~~~~~r~lv~r~~~k~g~GPt~e~qarg~~~~~~~~~tatG~r~~ari~t~~~y~stav~~a~~~l~ 341 (382)
T COG3268 269 LLGSAY-------VRDLLRGLVLRVVPKPGTGPTEEAQARGRYTIEGETTTATGERYTARITTDNDYYSTAVLLAQAALA 341 (382)
T ss_pred hhhhHH-------HhhhhHhhhheeccCCCCCCCHHHHhcCcceEEEEEEeccCCceeeEEecccchHHHHHHHHHHHHH
Confidence 222222 22233333322 1122 224677777778888877777765566666555544 44
Q ss_pred HHHhCC---CCCcccccCCCCccch
Q 022751 232 AVLEGA---TQPGVWFPEEPEGIAI 253 (292)
Q Consensus 232 ~ll~G~---~~~Gv~~PE~~~g~~~ 253 (292)
+.++.. .+.||+||..+.|.+.
T Consensus 342 ~ald~~~~~~~gGv~TPA~~lG~dl 366 (382)
T COG3268 342 LALDRDKLSEPGGVLTPAAALGADL 366 (382)
T ss_pred HHhcCCcccCCCcccChHHHHhHHH
Confidence 445544 6889999999997543
No 4
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=98.69 E-value=1.4e-07 Score=100.22 Aligned_cols=116 Identities=13% Similarity=0.116 Sum_probs=79.4
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcchhhhhHHHHHHHHhhcCCCCCceeEEEEEecCCCCC-Cch---------hhhhhhh
Q 022751 14 SFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGGA-GPT---------ILATSFL 83 (292)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~~g~~PGlSn~lA~~aa~~l~~~~~~~ve~Idi~~~~~g~g~~-G~~---------~~~~~l~ 83 (292)
+=+++.+++.+.+|| ++||+.+++|+++.++.. ...+++.++.... +|.... -+. +++-.+.
T Consensus 690 e~Ak~AGV~~m~e~G-----lDPGid~~lA~~~Id~~~-~~~GkI~s~~s~~--GGLP~pe~~~npL~YkfsWSp~gvi~ 761 (1042)
T PLN02819 690 SKAKEAGITILCEMG-----LDPGIDHMMAMKMIDDAH-ERGGKVKSFTSYC--GGLPSPEAANNPLAYKFSWNPAGAIK 761 (1042)
T ss_pred HHHHHcCCEEEECCc-----cCHHHHHHHHHHHHHhhc-ccCCcEEEEEEEE--cCccCcccCCCcccccccCCHHHHHH
Confidence 456677778777777 599999999999997652 3445788877775 554321 111 5556777
Q ss_pred hccceeeeeccCceEEeec---CCceeeeecCCCCC--cceeEeecCcccccccc--ccccc-eeee
Q 022751 84 LLGEEVVAYNKGEEITLEP---YSGMLSVDFGKGIG--RKDVFLLNLPEVRSARE--VLGVP-TVSA 142 (292)
Q Consensus 84 ~l~~p~~v~~dGr~~~v~~---~s~~r~vdFp~~~G--~r~~~~~~~pD~~Tlp~--~~gi~-~V~~ 142 (292)
.+..|+.+++||++++|++ |+..++++|+. ++ .-.+|.-. | +++. .++++ ++.+
T Consensus 762 ~~~npa~~i~~G~~~~V~~~~l~~~~~~~~~~~-~p~~~lE~~pNR--d--Sl~y~~~Ygi~~~a~t 823 (1042)
T PLN02819 762 AGQNPAVYKSNGQIIHVDGENLFASAVRFRLPN-LPAFALECLPNR--D--SLVYGELYGIEKEAAT 823 (1042)
T ss_pred HhcCcceeeECCEEEEecchhhhhhcccccccc-CCCcceEEccCC--C--cchhHHHhCCCcccce
Confidence 8889999999999999999 88888988753 22 33444332 3 4444 66665 4444
No 5
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=93.08 E-value=0.05 Score=51.77 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=37.2
Q ss_pred eeeeeeee-eeEeehhHHHHHHHHHHhCC----CCCcccccCCCCccchhhHHHHHHhhccCceeeeec
Q 022751 210 VGIFSHRR-LSVSVGTAIAAFVLAVLEGA----TQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMN 273 (292)
Q Consensus 210 ~~~~~~~~-~~~~Tg~~aa~~A~~ll~G~----~~~Gv~~PE~~~g~~~~~~~~~l~~~~~~~~~~~~~ 273 (292)
...+.-+| +|-+|..+.+-.|.-++... ..-||+||..+++.-. -+=+.++ -+++|++.
T Consensus 357 ~~~~sGPd~gYiaT~i~vlsaalt~L~~~~~lpk~GGV~tPaaaF~~T~----i~~~L~~-~GI~Fel~ 420 (423)
T KOG2733|consen 357 LVRCSGPDPGYIATSICVLSAALTLLKDKDKLPKGGGVYTPAAAFGNTK----IIDRLAK-HGIKFELI 420 (423)
T ss_pred EEEecCCCcchhhccHHHHHHHHHHHHHhhcCCCCCCccCchhhhcCCh----HHHHHHh-cCceEEEE
Confidence 44444444 56667777777777777432 2359999999997663 2333444 66688764
No 6
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=39.79 E-value=14 Score=19.17 Aligned_cols=11 Identities=36% Similarity=0.993 Sum_probs=8.5
Q ss_pred CCceeecCCcc
Q 022751 275 APWMVETEPKE 285 (292)
Q Consensus 275 ~~~~~~~~~~~ 285 (292)
.-|+.||.|++
T Consensus 6 ~~wlFEtqplD 16 (16)
T PF08043_consen 6 TRWLFETQPLD 16 (16)
T ss_pred eEEEeecccCC
Confidence 45999999874
No 7
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=22.68 E-value=72 Score=28.31 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=31.1
Q ss_pred chhhhhHHHHHHHHhhcCCCCCceeEEEEEecCCCCC-Cchhhhhhhhhccc
Q 022751 37 CYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGGA-GPTILATSFLLLGE 87 (292)
Q Consensus 37 GlSn~lA~~aa~~l~~~~~~~ve~Idi~~~~~g~g~~-G~~~~~~~l~~l~~ 87 (292)
|+.|++++..+ .++.||-++ .|.|+. |...++.++..+..
T Consensus 204 a~an~laA~~a---------G~~~id~s~--~G~G~~~Gn~~~e~~~~~l~~ 244 (265)
T cd03174 204 AVANSLAALEA---------GADRVDGSV--NGLGERAGNAATEDLVAALEG 244 (265)
T ss_pred HHHHHHHHHHc---------CCCEEEecc--ccccccccCccHHHHHHHHHh
Confidence 35688888877 789999997 677776 88888877776643
No 8
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=22.50 E-value=54 Score=28.87 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=26.6
Q ss_pred chhhhhHHHHHHHHhhcCCCCCceeEEEEEecCCCCC-Cchhhhhhhhhc
Q 022751 37 CYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGGA-GPTILATSFLLL 85 (292)
Q Consensus 37 GlSn~lA~~aa~~l~~~~~~~ve~Idi~~~~~g~g~~-G~~~~~~~l~~l 85 (292)
++.|++++.-+ .++.||.++ .|.|+. |...++..+..+
T Consensus 195 a~An~laA~~a---------Ga~~id~t~--~GlG~~~Gn~~le~lv~~L 233 (237)
T PF00682_consen 195 AVANALAALEA---------GADRIDGTL--GGLGERAGNAPLEELVAAL 233 (237)
T ss_dssp HHHHHHHHHHT---------T-SEEEEBG--GGGSSTTSB-BHHHHHHHH
T ss_pred hhHHHHHHHHc---------CCCEEEccC--ccCCCCCCCccHHHHHHHH
Confidence 45688888777 788999997 677776 877777666544
No 9
>COG3499 Phage protein U [General function prediction only]
Probab=21.48 E-value=77 Score=26.32 Aligned_cols=43 Identities=30% Similarity=0.508 Sum_probs=29.0
Q ss_pred CCCcccccCCCCccchhhHHHHHHhhccCceeeeecCCCceeecCCcccccccc
Q 022751 238 TQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIY 291 (292)
Q Consensus 238 ~~~Gv~~PE~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (292)
.-+||.+||+..|.. .-++|-+.|-+|. ||++=+---.+ .|||
T Consensus 51 tLsGvl~Pe~~GG~~--sL~aL~a~A~~G~--------p~~Li~G~G~i-~Gmf 93 (147)
T COG3499 51 TLSGVLYPEETGGES--SLDALRALAETGT--------PLPLIDGDGAI-YGMF 93 (147)
T ss_pred EEcceecchhhCCHh--HHHHHHHHHhcCC--------ceEEEcCCceE-EEEE
Confidence 578999998887544 6777888886666 66655444333 5554
No 10
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=16.11 E-value=1.4e+02 Score=27.13 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=27.3
Q ss_pred hhhhhHHHHHHHHhhcCCCCCceeEEEEEecCCCCC-Cchhhhhhhhhc
Q 022751 38 YMTVMAAELVRVARNESKGEPERLRFSYYTAGTGGA-GPTILATSFLLL 85 (292)
Q Consensus 38 lSn~lA~~aa~~l~~~~~~~ve~Idi~~~~~g~g~~-G~~~~~~~l~~l 85 (292)
+.|.+++..+ .++.||-++ .|.|+. |...++..+..+
T Consensus 210 ~An~laA~~a---------Ga~~id~s~--~GlGeraGn~~~e~~~~~L 247 (273)
T cd07941 210 VANSLAAVEA---------GATQVQGTI--NGYGERCGNANLCSIIPNL 247 (273)
T ss_pred HHHHHHHHHc---------CCCEEEEec--cccccccccccHHHHHHHH
Confidence 4577777666 788889887 577776 877777777666
Done!