Query 022751
Match_columns 292
No_of_seqs 115 out of 356
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 10:31:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ina_A Saccharopine dehydrogen 99.9 4.4E-28 1.5E-32 232.3 10.2 208 30-249 138-375 (405)
2 2z2v_A Hypothetical protein PH 99.9 4.9E-23 1.7E-27 194.9 11.4 214 14-252 119-345 (365)
3 3abi_A Putative uncharacterize 99.8 8.3E-20 2.8E-24 172.2 10.2 228 14-267 119-359 (365)
4 2axq_A Saccharopine dehydrogen 99.3 6.9E-12 2.4E-16 122.0 10.2 213 15-245 131-440 (467)
5 1ff9_A Saccharopine reductase; 99.2 3.7E-11 1.3E-15 116.3 9.9 216 15-245 111-423 (450)
6 2ph5_A Homospermidine synthase 98.8 4.7E-10 1.6E-14 108.7 1.5 132 9-146 133-317 (480)
7 2j5d_A BNIP3 TM, BCL2/adenovir 38.3 1.7 5.7E-05 27.9 -2.8 18 275-292 21-38 (45)
8 2lq1_A De novo designed antifr 24.3 16 0.00054 20.0 -0.0 14 32-45 4-17 (26)
9 2ker_A Parvulustat, alpha-amyl 16.1 48 0.0017 23.4 1.0 29 90-119 33-61 (78)
10 3ewb_X 2-isopropylmalate synth 13.6 83 0.0028 27.8 2.2 38 37-85 211-249 (293)
No 1
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=99.95 E-value=4.4e-28 Score=232.35 Aligned_cols=208 Identities=18% Similarity=0.183 Sum_probs=165.8
Q ss_pred HHHhhhcchhhhhHHHHHHHHhhcCCCCCceeEEEEEecCCCCCCc-----hhhhhhhhhccceeeeeccCceEEeecCC
Q 022751 30 ILILTDICYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGGAGP-----TILATSFLLLGEEVVAYNKGEEITLEPYS 104 (292)
Q Consensus 30 ~~~g~~PGlSn~lA~~aa~~l~~~~~~~ve~Idi~~~~~g~g~~G~-----~~~~~~l~~l~~p~~v~~dGr~~~v~~~s 104 (292)
.++|++||++|++++++++ +.++++++|+|+.+.++ +.|. -++++++++++.|+.+|+||+|+++|+++
T Consensus 138 ~g~G~~PG~~~l~a~~~~~----~~~~~i~~i~i~~~~gg--~~g~~~~~~~sp~~~~~~~~~~~~~~~~G~~~~~~~~~ 211 (405)
T 4ina_A 138 LGSGFDPGVTNVFCAYAQK----HYFDEIHEIDILDCNAG--DHGYPFATNFNPEINLREVSSKGRYWENGEWIETEPME 211 (405)
T ss_dssp ECCBTTTBHHHHHHHHHHH----HTCSEEEEEEEEEEECC--BCSSSSCCSSCHHHHHHHTTSCEEEEETTEEEEESTTC
T ss_pred EcCCCCccHHHHHHHHHHH----hccCcccEEEEEEecCC--CCCccceeeeCHHHHHHHhcCCcEEEECCEEEEecCCc
Confidence 3455799999999999994 35679999999874433 3332 24678889999999999999999999999
Q ss_pred ceeeeecCCCCCcceeEeecCccccccccccc-cceeeeeccCCccchhhhHHHhhhcCchhhccchh---------hHH
Q 022751 105 GMLSVDFGKGIGRKDVFLLNLPEVRSAREVLG-VPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRS---------KVQ 174 (292)
Q Consensus 105 ~~r~vdFp~~~G~r~~~~~~~pD~~Tlp~~~g-i~~V~~~~g~~~~~~~~ll~~l~~lg~~~LL~~~~---------~~~ 174 (292)
+.+.++||. +|++.+|+++|||+.|++++++ +++|+||++|.+.+.+. +++|+++| |++..+ +.+
T Consensus 212 ~~~~~~fp~-~G~~~~y~~~~~e~~tl~~~~~~~~~v~~~~~~~~~~~~~-~~~L~~lG---l~~~~~v~~~g~~v~p~~ 286 (405)
T 4ina_A 212 IMQVWDYPE-VGPKDSYLLYHEELESLVRNIKGLKRIRFFMTFGQSYLTH-MRCLENVG---MLRIDEIEVNGCKVVPIQ 286 (405)
T ss_dssp CEEEEEETT-TEEEEEEEECCTHHHHHHHHSTTCCEEEEEEECCHHHHHH-HHHHHHHT---TTCCSCEEETTEEECHHH
T ss_pred eeEEEECCC-CceeeEEEeCCCcHHHHHhhCCCcceEEeecccCHHHHHH-HHHHHHcC---CCCCCceeeCCceecHHH
Confidence 999999996 9999999999999999999996 79999999999999987 46778886 555332 345
Q ss_pred HHHHhhhhhhhhhcccccceeeeeeeeee-cCCCce----eeeeeeee---------eeEeehhHHHHHHHHHHhCC-CC
Q 022751 175 QLVQLFDPVVRAFDGIAGERVSMRVDLEC-TDGRNT----VGIFSHRR---------LSVSVGTAIAAFVLAVLEGA-TQ 239 (292)
Q Consensus 175 ~la~l~~~l~~~~~~~~g~~~~m~v~v~g-~~G~~~----~~~~~~~~---------~~~~Tg~~aa~~A~~ll~G~-~~ 239 (292)
+|+.+......+.+. ..+...|++.++| +||++. +.+++|.+ ++++||.|++++|+++++|+ ..
T Consensus 287 ~l~~~l~~~~~~~~~-~~d~~~i~~~v~g~~~G~~~~~~~~~~~~~~~~~~~~~~~a~~~ttg~p~~i~a~li~~G~~~~ 365 (405)
T 4ina_A 287 VLKALLPDPASLASR-TKGKTNIGCYIKGIKEGKARTIYIYNVCDHESCYREVNAQAISYTTGVPAMIGAKLMLEGKWSG 365 (405)
T ss_dssp HHHHHSCCHHHHTTT-CBSEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHSSCHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHhcchhhccCCC-CCCeEEEEEEEEEEECCeEEEEEEEEEeccccccccccceEEEeccChhHHHHHHHHhCCccCC
Confidence 666544333233333 3455679999995 689866 34566543 68999999999999999999 89
Q ss_pred CcccccCCCC
Q 022751 240 PGVWFPEEPE 249 (292)
Q Consensus 240 ~Gv~~PE~~~ 249 (292)
+||+.||+++
T Consensus 366 ~Gv~~~e~~~ 375 (405)
T 4ina_A 366 KGVFNMEELD 375 (405)
T ss_dssp SEEEEGGGSC
T ss_pred CceecccccC
Confidence 9999999975
No 2
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=99.88 E-value=4.9e-23 Score=194.89 Aligned_cols=214 Identities=13% Similarity=0.063 Sum_probs=163.5
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcchhhhhHHHHHHHHhhcCCCCCceeEEEEEecCCCC-----CC---chhhhhhhhhc
Q 022751 14 SFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGG-----AG---PTILATSFLLL 85 (292)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~~g~~PGlSn~lA~~aa~~l~~~~~~~ve~Idi~~~~~g~g~-----~G---~~~~~~~l~~l 85 (292)
+-+++.++..+.+|| ++||++|++|+++++ +++ ++++++++ +|.+. .+ .-+++.+++++
T Consensus 119 ~~Ak~aG~~~l~g~G-----~dPG~~~~~a~~~~~-----~~~-v~~i~~~~--Gglp~~~~~p~~y~~sws~~~~i~~~ 185 (365)
T 2z2v_A 119 DEAEKAQVTIVFDAG-----FAPGLSNILMGRIFQ-----ELD-LKEGYIYV--GGLPKDPKPPLYYKITWSPRDLIEEY 185 (365)
T ss_dssp HHHHHTTCEEECSCB-----TTTBHHHHHHHHHHH-----HSC-EEEEEEEE--EEEESSCCTTTCCCCCSCHHHHHHHH
T ss_pred HHHHHcCCEEEECCC-----CcchHHHHHHHHHHH-----hcC-CCEEEEEe--ccCCCCCCCCceeEEEecHHHHHHHh
Confidence 455666777666665 689999999999994 366 99999875 44321 11 12567788899
Q ss_pred cceeeeeccCceEEeecCCceeeeecCCCCCcceeEeecCccccccccccccceeeeeccCCccchhhhHHHhhhcCchh
Q 022751 86 GEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAE 165 (292)
Q Consensus 86 ~~p~~v~~dGr~~~v~~~s~~r~vdFp~~~G~r~~~~~~~pD~~Tlp~~~gi~~V~~~~g~~~~~~~~ll~~l~~lg~~~ 165 (292)
+.|+.+|+||+|++++++++.+.++||. ++..+|. ++++.|++++++++++.+++.+.+.+.+. +++|..+|
T Consensus 186 ~~~~~~~~~G~~~~v~~~~~~~~~~~p~--~~~e~~~--~~~l~sl~~~~~~~~~~~~t~r~~g~~~~-~~~L~~lG--- 257 (365)
T 2z2v_A 186 TRPARVIRNGKVSKVDPLSEVKKVKIGK--FEFEAFI--SDGLRSMLETINSERLEEWTLRWPGHLEK-IKVLRELG--- 257 (365)
T ss_dssp HSCEEEEETTEEEEECTTTCEEEEEETT--EEEEEEE--ESCCTTHHHHSCCSEEEEEEEECTTHHHH-HHHHHHTT---
T ss_pred cCcceEEECCEEEEecCCCCceEEEcCC--eeEEEEe--CCChhhHhcCCcCCeEEEeeeeccCHHHH-HHHHHHCC---
Confidence 9999999999999999999999999996 3777775 67999999999999999999999999986 56888885
Q ss_pred hccchhhHHHHHHhhhhhhhhhcccccceeeeeeeeeecCCCceeeeeeeee-----eeEeehhHHHHHHHHHHhCCCCC
Q 022751 166 YLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRR-----LSVSVGTAIAAFVLAVLEGATQP 240 (292)
Q Consensus 166 LL~~~~~~~~la~l~~~l~~~~~~~~g~~~~m~v~v~g~~G~~~~~~~~~~~-----~~~~Tg~~aa~~A~~ll~G~~~~ 240 (292)
|++.++....++.+. +.... ...+...|+++++|.+++..+.++++++ ++++||.|++++|+++++|+..+
T Consensus 258 l~~~~~~~~~~~~l~-p~~~~---~~~d~~~~~v~~~g~~~~~~~~~~~~~~~g~sams~ttg~p~~i~a~li~~G~~~~ 333 (365)
T 2z2v_A 258 FFKPENLDFTLRVIE-PLMRY---ETKDFSIMKVVGKGEEGEMEFFLYDEEDSMFSSMSRVTGFTAAIISRIVAENTCTF 333 (365)
T ss_dssp TTSHHHHHHHHHHHG-GGGCS---SCCEEEEEEEEEEESSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHTTCSCS
T ss_pred CCCCchHHHHHHccc-ccccC---CCCCEEEEEEEEEcCceEEEEEEEecCCCcceEeehhhhhHHHHHHHHHHCCCccc
Confidence 776665322222221 11111 1256667899998755444466777755 78999999999999999998899
Q ss_pred cccccCCCCccc
Q 022751 241 GVWFPEEPEGIA 252 (292)
Q Consensus 241 Gv~~PE~~~g~~ 252 (292)
||++||+++..+
T Consensus 334 Gv~~pE~~~~~~ 345 (365)
T 2z2v_A 334 GVIPPEILGMRE 345 (365)
T ss_dssp EEECGGGGTSSH
T ss_pred ceecHHHcCCch
Confidence 999999998544
No 3
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=99.80 E-value=8.3e-20 Score=172.18 Aligned_cols=228 Identities=11% Similarity=0.032 Sum_probs=164.1
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcchhhhhHHHHHHHHhhcCCCCCceeEEEEEecCCCCC--C------chhhhhhhhhc
Q 022751 14 SFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGGA--G------PTILATSFLLL 85 (292)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~~g~~PGlSn~lA~~aa~~l~~~~~~~ve~Idi~~~~~g~g~~--G------~~~~~~~l~~l 85 (292)
+-+++.++..+.+|| ++||+||++|+++.++++ ++.+.++. .+.... + .-+++.+++++
T Consensus 119 ~~a~~~g~~~i~~~G-----~~PG~~~~~a~~~~~~~~------~~~~~~~~--gg~p~~~~~~~~y~~~~s~~~~i~~~ 185 (365)
T 3abi_A 119 DEAEKAQVTIVFDAG-----FAPGLSNILMGRIFQELD------LKEGYIYV--GGLPKDPKPPLYYKITWSPRDLIEEY 185 (365)
T ss_dssp HHHHHTTCEEECCCB-----TTTBHHHHHHHHHHHHSC------EEEEEEEE--EEEESSCCTTTCCCCCSCHHHHHHHH
T ss_pred hhhccCCceeeecCC-----CCCchHHHHHHHHHHhcc------ccceeEEe--cccCCCCCCcchhceeechhhhHHhh
Confidence 666777888888777 589999999999996553 44455443 332111 1 22678889999
Q ss_pred cceeeeeccCceEEeecCCceeeeecCCCCCcceeEeecCccccccccccccceeeeeccCCccchhhhHHHhhhcCchh
Q 022751 86 GEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAE 165 (292)
Q Consensus 86 ~~p~~v~~dGr~~~v~~~s~~r~vdFp~~~G~r~~~~~~~pD~~Tlp~~~gi~~V~~~~g~~~~~~~~ll~~l~~lg~~~ 165 (292)
..|+.+|+||+++.++|+++.+.++||. + ..+.+++.++.++.++++++++.+++...+.+.+. ++.|..+|
T Consensus 186 ~~~~~~~~~G~~~~v~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~g~~~~-~~~L~~lG--- 257 (365)
T 3abi_A 186 TRPARVIRNGKVSKVDPLSEVKKVKIGK--F--EFEAFISDGLRSMLETINSERLEEWTLRWPGHLEK-IKVLRELG--- 257 (365)
T ss_dssp HSCEEEEETTEEEEECTTTCEEEEEETT--E--EEEEEECSCCTTHHHHSCCSEEEEEEEECTTHHHH-HHHHHHTT---
T ss_pred CCCcEEEECCeEEEecCcCcceEEecCC--c--ceeeecccchhhhhhccCcCceeeeecccccHHHH-HHHHHHhc---
Confidence 9999999999999999999999999974 3 35566788999999999999999999999999886 45777775
Q ss_pred hccchhhHHHHHHhhhhhhhhhcccccceeeeeeeeeecCCCceeeeeeeee-----eeEeehhHHHHHHHHHHhCCCCC
Q 022751 166 YLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRR-----LSVSVGTAIAAFVLAVLEGATQP 240 (292)
Q Consensus 166 LL~~~~~~~~la~l~~~l~~~~~~~~g~~~~m~v~v~g~~G~~~~~~~~~~~-----~~~~Tg~~aa~~A~~ll~G~~~~ 240 (292)
+++..+ ++.+... +.+.++....+...|++.+++.+++..+.++++.+ |+.+||++++++|+++++|+..+
T Consensus 258 l~~~~~-~~~~~~~---l~~~~~~~~~d~~~~~V~g~~~~~~~~~~~~~~~d~~~sAMa~tTG~~~a~~a~lil~g~i~~ 333 (365)
T 3abi_A 258 FFKPEN-LDFTLRV---IEPLMRYETKDFSIMKVVGKGEEGEMEFFLYDEEDSMFSSMSRVTGFTAAIISRIVAENTCTF 333 (365)
T ss_dssp TTSHHH-HHHHHHH---HGGGGCSSCCEEEEEEEEEEETTEEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHTTCSCS
T ss_pred CCCcch-HHHHHhh---hHHhcCCccCceEEEEEEEEeCCCeEEEEEEEccCCCccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 554332 2323222 22333333445556777776666666666666543 56789999999999999999668
Q ss_pred cccccCCCCccchhhHHHHHHhhccCc
Q 022751 241 GVWFPEEPEGIAIEAREVLLKRASQGT 267 (292)
Q Consensus 241 Gv~~PE~~~g~~~~~~~~~l~~~~~~~ 267 (292)
||++||++.-+.. ...-+|+.-++-+
T Consensus 334 GV~~PE~l~~~~~-~~~~~l~~L~~~G 359 (365)
T 3abi_A 334 GVIPPEILGMRED-TFRRIIDELKERG 359 (365)
T ss_dssp EEECTHHHHHSHH-HHHHHHHHHHHTT
T ss_pred CEEChhhcccchh-hHHHHHHHHHHCC
Confidence 9999999854332 4555665444333
No 4
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.29 E-value=6.9e-12 Score=122.04 Aligned_cols=213 Identities=14% Similarity=0.124 Sum_probs=127.3
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcchhhhhHHHHHHHHhhcCCCCCceeEEEEEecCC-------CCCCc---hhhhhhhhh
Q 022751 15 FLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRFSYYTAGT-------GGAGP---TILATSFLL 84 (292)
Q Consensus 15 ~~~~~~~~~~~~~g~~~~g~~PGlSn~lA~~aa~~l~~~~~~~ve~Idi~~~~~g~-------g~~G~---~~~~~~l~~ 84 (292)
.+++.++..+. ++|.+||+++++|+++.++.. +.-++++++.++. ++. +..+. -+++.++.+
T Consensus 131 ~Ak~aGv~~i~-----g~G~~PG~~~~~a~~li~q~~-~~g~~~~s~~~wt--G~~p~~~~~~~~l~y~fsws~~g~i~~ 202 (467)
T 2axq_A 131 EIVKAGITVMN-----EIGLDPGIDHLYAVKTIDEVH-RAGGKLKSFLSYC--GGLPAPEDSDNPLGYKFSWSSRGVLLA 202 (467)
T ss_dssp HHHHHTCEEEC-----SCBBTTBHHHHHHHHHHHHHH-HTTCEEEEEEEEE--EEEECGGGCCSTTSCCBSSCCHHHHHG
T ss_pred HHHHcCCEEEe-----cCCcCccchHHHHHHHHHHHH-hccCcceEEEEEe--cccCCcccccccccCcCCCCHHHHHHH
Confidence 34444544333 356799999999999887763 1102466666653 221 11110 134567778
Q ss_pred ccceeeeeccCceEEeecCCceeeee----cCCCCCcceeEe----ecCccccccccccccceeee-eccCCccchhhhH
Q 022751 85 LGEEVVAYNKGEEITLEPYSGMLSVD----FGKGIGRKDVFL----LNLPEVRSAREVLGVPTVSA-RFGTAPFFWNWGM 155 (292)
Q Consensus 85 l~~p~~v~~dGr~~~v~~~s~~r~vd----Fp~~~G~r~~~~----~~~pD~~Tlp~~~gi~~V~~-~~g~~~~~~~~ll 155 (292)
+..|+.+|+||+|+++++++..+.++ ||. + +..+|. +.+-|...+++...+.+.++ |.|+.. .+
T Consensus 203 ~~~~a~~~~~G~~~~v~~~~~~~~~~~~~~~~g-~-~~e~~~~~~~~~~~e~y~i~~~~~~~r~tlR~~g~~~-----~~ 275 (467)
T 2axq_A 203 LRNSAKYWKDGKIETVSSEDLMATAKPYFIYPG-Y-AFVCYPNRDSTLFKDLYHIPEAETVIRGTLRYQGFPE-----FV 275 (467)
T ss_dssp GGSCEEEEETTEEEEECTTTHHHHCEECCSSTT-C-CEEEEECSBCTHHHHHTTCTTCSEEEEEEEEETTHHH-----HH
T ss_pred hcCCeEEEECCEEEEecChhhhccccccccCCC-c-cEEEecCCCcchhhhhhCCCCcceeEEEEEEeCCHHH-----HH
Confidence 88899999999999999999888887 564 2 444444 22333333443334555666 555555 35
Q ss_pred HHhhhcCchhhccchh---------hHHHHHHhh-h--------------------------------------------
Q 022751 156 VTMQRLFPAEYLRDRS---------KVQQLVQLF-D-------------------------------------------- 181 (292)
Q Consensus 156 ~~l~~lg~~~LL~~~~---------~~~~la~l~-~-------------------------------------------- 181 (292)
++|..+| |++..+ ..++++.+. .
T Consensus 276 ~~L~~lG---l~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~ 352 (467)
T 2axq_A 276 KALVDMG---MLKDDANEIFSKPIAWNEALKQYLGAKSTSKEDLIASIDSKATWKDDEDRERILSGFAWLGLFSDAKITP 352 (467)
T ss_dssp HHHHHTT---TTCCSBCGGGSSCCBHHHHHHHHHTCSSSSHHHHHHHHHTTCCCSCHHHHHHHHHHHHHTTTTSSCBCCC
T ss_pred HHHHHcC---CCCCCcccccCCCcCHHHHHHHhcCCCcccHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCCCCccCC
Confidence 6666775 333321 112333211 0
Q ss_pred ------hhhhhhc------ccccceeeeeeeee-e-cCCCceee--e-e--ee----eeeeEeehhHHHHHHHHHHhCC-
Q 022751 182 ------PVVRAFD------GIAGERVSMRVDLE-C-TDGRNTVG--I-F--SH----RRLSVSVGTAIAAFVLAVLEGA- 237 (292)
Q Consensus 182 ------~l~~~~~------~~~g~~~~m~v~v~-g-~~G~~~~~--~-~--~~----~~~~~~Tg~~aa~~A~~ll~G~- 237 (292)
.+.+.+. .-..|...|+++++ + +||++... . . .. ..|+++||+|++++|+++++|+
T Consensus 353 ~~~~~d~l~~~l~~~l~~~~~e~D~v~l~~~~~~~~~~g~~~~~~~~~~~y~~~~g~sama~tvG~p~ai~a~~i~~g~i 432 (467)
T 2axq_A 353 RGNALDTLCARLEELMQYEDNERDMVVLQHKFGIEWADGTTETRTSTLVDYGKVGGYSSMAATVGYPVAIATKFVLDGTI 432 (467)
T ss_dssp CSBHHHHHHHHHHHHSBCCTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHHhhccCCCCCceEEEEEEEEEEecCCcEEEEEEEEEEecCCCCceEEehhhchhHHHHHHHHhCCcc
Confidence 0001110 11334556788887 6 68887622 1 1 12 3367899999999999999999
Q ss_pred CCCccccc
Q 022751 238 TQPGVWFP 245 (292)
Q Consensus 238 ~~~Gv~~P 245 (292)
..+||+.|
T Consensus 433 ~~~Gv~~P 440 (467)
T 2axq_A 433 KGPGLLAP 440 (467)
T ss_dssp CCSEEECS
T ss_pred CCCcccCC
Confidence 88999999
No 5
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A
Probab=99.20 E-value=3.7e-11 Score=116.32 Aligned_cols=216 Identities=14% Similarity=0.134 Sum_probs=129.3
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcchhhhhHHHHHHHHhhcCCCCCceeEEEEEecCCCC-------CC---chhhhhhhhh
Q 022751 15 FLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGG-------AG---PTILATSFLL 84 (292)
Q Consensus 15 ~~~~~~~~~~~~~g~~~~g~~PGlSn~lA~~aa~~l~~~~~~~ve~Idi~~~~~g~g~-------~G---~~~~~~~l~~ 84 (292)
-+++.++..+. ++|.+||+++++|+++.++.. +.-++++++++.. .+..+ .+ .-+.+.++..
T Consensus 111 aA~~aGv~~i~-----g~g~~pg~~~~~a~~li~q~~-~~gg~i~~~~~~~--G~~p~~~~~~~~l~~~~~~s~~g~l~~ 182 (450)
T 1ff9_A 111 AAKDAGITVMN-----EIGLDPGIDHLYAIKTIEEVH-AAGGKIKTFLSYC--GGLPAPESSDNPLGYKFSWSSRGVLLA 182 (450)
T ss_dssp HHHHTTCEEEC-----SCBBTTBHHHHHHHHHHHHHH-HTTCEEEEEEEEE--EEEECGGGCCSTTSCCCSSCHHHHHHH
T ss_pred HHHHCCCeEEe-----CCCCcCchHHHHHHHHHHHhc-ccCCeeeEEEEEE--cccCccccCCccccceeccChHHHHHH
Confidence 34455555333 356799999999999997651 0003678887753 22111 11 1123456667
Q ss_pred ccceeeeeccCceEEeecCC---ceeeeecCCCCCcceeEeecCccccccccccccceeee--eccC-CccchhhhHHHh
Q 022751 85 LGEEVVAYNKGEEITLEPYS---GMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSA--RFGT-APFFWNWGMVTM 158 (292)
Q Consensus 85 l~~p~~v~~dGr~~~v~~~s---~~r~vdFp~~~G~r~~~~~~~pD~~Tlp~~~gi~~V~~--~~g~-~~~~~~~ll~~l 158 (292)
+..++.+|+||+++++++++ ..+.++|++++ . .-.+++.|...+...++++++.+ +..+ .+.+.+. +++|
T Consensus 183 ~~~~~~~~~~G~~~~v~~~~~~~~~~~~~~~~g~-~--~e~~~~~~s~~~~~~~~~~~~~~l~r~tlR~~g~~~~-~~~l 258 (450)
T 1ff9_A 183 LRNAASFYKDGKVTNVAGPELMATAKPYFIYPGF-A--FVAYPNRDSTPYKERYQIPEADNIVRGTLRYQGFPQF-IKVL 258 (450)
T ss_dssp TTSCEEEEETTEEEEECTHHHHHTCEECCSSTTC-C--EEEEECSBCTTHHHHTTCTTCSEEEEEEEEETTHHHH-HHHH
T ss_pred hhChhheEeCCeEEEEeCcchhccceeeecCCCc-e--EEEeccCCcchhHhhcCCCCcceEEEeeEeccCHHHH-HHHH
Confidence 78899999999999999998 45567884433 3 44555567333333334444332 3333 4566665 5677
Q ss_pred hhcCchhhccchh---------hHHHHHHhh-h-----------------------------------------------
Q 022751 159 QRLFPAEYLRDRS---------KVQQLVQLF-D----------------------------------------------- 181 (292)
Q Consensus 159 ~~lg~~~LL~~~~---------~~~~la~l~-~----------------------------------------------- 181 (292)
.++| |++..+ ..++++.+. .
T Consensus 259 ~~lG---l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 335 (450)
T 1ff9_A 259 VDIG---FLSDEEQPFLKEAIPWKEATQKIVKASSASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKITPRGN 335 (450)
T ss_dssp HHTT---TTCCCBCGGGSSCCBHHHHHHHHHTCSSSSHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHTTTSSCBCCCCSB
T ss_pred HHcC---CCCCCccccccCCCCHHHHHHHHhCCCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHhhccCCcccccCCCC
Confidence 7776 333221 112222210 0
Q ss_pred ---hhhhhhc------ccccceeeeeeeee-e-cCCCce---eeeeeeee---------eeEeehhHHHHHHHHHHhCC-
Q 022751 182 ---PVVRAFD------GIAGERVSMRVDLE-C-TDGRNT---VGIFSHRR---------LSVSVGTAIAAFVLAVLEGA- 237 (292)
Q Consensus 182 ---~l~~~~~------~~~g~~~~m~v~v~-g-~~G~~~---~~~~~~~~---------~~~~Tg~~aa~~A~~ll~G~- 237 (292)
.+...+. .-..|...|+++++ + +||++. +.+++|++ |+++||+|++++|+++++|+
T Consensus 336 p~~~l~~~l~~~~~~~~~e~d~v~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~ama~t~G~p~ai~a~~i~~g~~ 415 (450)
T 1ff9_A 336 ALDTLCATLEEKMQFEEGERDLVMLQHKFEIENKDGSRETRTSSLCEYGAPIGSGGYSAMAKLVGVPCAVAVKFVLDGTI 415 (450)
T ss_dssp HHHHHHHHHHHHSSCCTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEECCCTTSSSCCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhhHhhccCCCCCceEEEEEEEEEEecCCCEEEEEEEEEEeccccCCCCccceeHhhchHHHHHHHHHhCCCc
Confidence 0111110 11334556788887 6 788866 44554433 56789999999999999999
Q ss_pred CCCccccc
Q 022751 238 TQPGVWFP 245 (292)
Q Consensus 238 ~~~Gv~~P 245 (292)
..+||+.|
T Consensus 416 ~~~Gv~~p 423 (450)
T 1ff9_A 416 SDRGVLAP 423 (450)
T ss_dssp CCCEEECS
T ss_pred CCCceeCC
Confidence 89999999
No 6
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}
Probab=98.85 E-value=4.7e-10 Score=108.66 Aligned_cols=132 Identities=11% Similarity=-0.018 Sum_probs=93.0
Q ss_pred hhHHhhhhhhhhh-----HHHHHHHHHHHhhhcchhhhhHHHHHHHHhhc---CCC---------------CCceeEEEE
Q 022751 9 LDYAMSFLRSEKL-----YLLLCCFWILILTDICYMTVMAAELVRVARNE---SKG---------------EPERLRFSY 65 (292)
Q Consensus 9 ~~~~~~~~~~~~~-----~~~~~~g~~~~g~~PGlSn~lA~~aa~~l~~~---~~~---------------~ve~Idi~~ 65 (292)
++|+..|...+.. ..+++| |++||++|.+++++++.+.++ .++ .++.|.|+-
T Consensus 133 ~~Y~~~~~~~~~~~~~~GtAilg~-----G~nPGvvsvf~~~Al~~la~d~g~~~~~~~~~~~~~~l~~~lgVk~Ihiae 207 (480)
T 2ph5_A 133 TNYSLREEVLRLKDKTQKTALITH-----GANPGLVSHFIKEALLNIAKDNGLTINRPKNAAEWANLAMTLGIKVIHVAE 207 (480)
T ss_dssp CHHHHHHHHHTTTTTCCSCEECSC-----BTTTBHHHHHHHHHHHHHHHTTTCCCCCCCSHHHHHHHHHHTTCCEEEEEE
T ss_pred hhHHHHHHHHHHHHhcCCcEEecC-----CCCccHHHHHHHHHHHhHhhhcCCcccccccchhhhHHHhhcCceEEEEee
Confidence 3566666632222 234555 579999999999999877532 133 567888864
Q ss_pred EecCCCC--C--C----chhhhhhhhhccce---------------eeeeccC----ceEEeecCCceeeeecCCCCCcc
Q 022751 66 YTAGTGG--A--G----PTILATSFLLLGEE---------------VVAYNKG----EEITLEPYSGMLSVDFGKGIGRK 118 (292)
Q Consensus 66 ~~~g~g~--~--G----~~~~~~~l~~l~~p---------------~~v~~dG----r~~~v~~~s~~r~vdFp~~~G~r 118 (292)
--.+.+. . + .-+++.++++...| ...++|| .|.+.++++...+..+|. +|++
T Consensus 208 rDtqv~~~Pk~~~~F~~twS~eg~I~E~~~P~e~~wg~he~~~p~~~~~~~~G~~~~~~~t~~g~~t~~~t~~p~-~g~~ 286 (480)
T 2ph5_A 208 QDSQVTYPPKSPGEFVNTWSANGLILEGLQPAEIGWGTHEAHWPHDAYSHSNGPQCAIYLSRPSAGVMVRSWTPT-LGAF 286 (480)
T ss_dssp EECCEESSCCCTTEEEESSCHHHHHHHHHSEEEEECCTTCCCCCTTEECCSSSCTTEEEEEEEGGGCEEEECCTT-TCSE
T ss_pred ecccccccCCCCCeeecccchhhhHHHhcCchhhcccccccccCCcccccccCcceeEEEcCCCceeEEEEeCCC-ccce
Confidence 1001111 1 1 11778888888888 4556778 599999997666666686 8999
Q ss_pred eeEeecCccccccccccccc---eeeeeccC
Q 022751 119 DVFLLNLPEVRSAREVLGVP---TVSARFGT 146 (292)
Q Consensus 119 ~~~~~~~pD~~Tlp~~~gi~---~V~~~~g~ 146 (292)
.+|++.|.|..++++++.++ ++.+|+.+
T Consensus 287 ~g~lv~HeE~~si~~~~t~~~~g~~~yr~T~ 317 (480)
T 2ph5_A 287 HGFLITHAETISLTNFLTLKNGSELLYRPTV 317 (480)
T ss_dssp EEECCCCSHHHHHHHHTCEESSSSEEECCEE
T ss_pred eEEEeecHHHhhhhhceeeccCCeeeeecch
Confidence 99999999999999999864 68899888
No 7
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=38.33 E-value=1.7 Score=27.90 Aligned_cols=18 Identities=39% Similarity=0.707 Sum_probs=13.6
Q ss_pred CCceeecCCccccccccC
Q 022751 275 APWMVETEPKELGLGIYI 292 (292)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~ 292 (292)
-|=-+++.-+++||||||
T Consensus 21 ~psll~shiL~~GlgIyI 38 (45)
T 2j5d_A 21 LPSLLLSHLLAIGLGIYI 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcceEEe
Confidence 345567777889999986
No 8
>2lq1_A De novo designed antifreeze peptide 3; AFP, antifreeze protein; NMR {Synthetic}
Probab=24.28 E-value=16 Score=19.95 Aligned_cols=14 Identities=7% Similarity=-0.128 Sum_probs=10.5
Q ss_pred HhhhcchhhhhHHH
Q 022751 32 ILTDICYMTVMAAE 45 (292)
Q Consensus 32 ~g~~PGlSn~lA~~ 45 (292)
+|.+||+|..+...
T Consensus 4 vglspglstaltgf 17 (26)
T 2lq1_A 4 VGLSPGLSTALTGF 17 (26)
T ss_dssp TSSHHHHHHHHHHT
T ss_pred cccCccceehcccc
Confidence 46789999887654
No 9
>2ker_A Parvulustat, alpha-amylase inhibitor Z-2685; parvulustat (Z-2685), hydrolase inhibitor; NMR {Streptomyces parvulus}
Probab=16.09 E-value=48 Score=23.41 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=20.5
Q ss_pred eeeccCceEEeecCCceeeeecCCCCCcce
Q 022751 90 VAYNKGEEITLEPYSGMLSVDFGKGIGRKD 119 (292)
Q Consensus 90 ~v~~dGr~~~v~~~s~~r~vdFp~~~G~r~ 119 (292)
..|+||+|..-.-..-.....|| ++|++.
T Consensus 33 V~Y~dG~~~PCrv~~PG~~~Tf~-GyGT~g 61 (78)
T 2ker_A 33 VEYTHGQWAPCRVIEPGGWATFA-GYGTDG 61 (78)
T ss_dssp EEESSCCSCCCEEECTTCCCEEE-CSCTTS
T ss_pred EEEeCCCcceeEEeCCCCEEEec-ccccCC
Confidence 46889988665555555688898 578774
No 10
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=13.64 E-value=83 Score=27.78 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=24.9
Q ss_pred chhhhhHHHHHHHHhhcCCCCCceeEEEEEecCCCCC-Cchhhhhhhhhc
Q 022751 37 CYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGGA-GPTILATSFLLL 85 (292)
Q Consensus 37 GlSn~lA~~aa~~l~~~~~~~ve~Idi~~~~~g~g~~-G~~~~~~~l~~l 85 (292)
++.|++++.-+ .++.||.++ .|.|+. |....+..+..+
T Consensus 211 a~AN~laA~~a---------Ga~~vd~sv--~GlGeraGN~~~E~vv~~L 249 (293)
T 3ewb_X 211 ATANALAAIEN---------GARRVEGTI--NGIGERAGNTALEEVAVAL 249 (293)
T ss_dssp HHHHHHHHHHT---------TCCEEEEBG--GGCCTTTCBCBHHHHHHHH
T ss_pred HHHHHHHHHHh---------CCCEEEeec--cccccccccHhHHHHHHHH
Confidence 34577776666 677888876 676765 766666655544
Done!