Your job contains 1 sequence.
>022752
MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS
NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVS
TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ
KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK
ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCIR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022752
(292 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2091161 - symbol:AT3G19630 species:3702 "Arabi... 1186 1.5e-120 1
DICTYBASE|DDB_G0288255 - symbol:DDB_G0288255 "putative ri... 529 6.5e-51 1
UNIPROTKB|Q603C0 - symbol:rlmN "Dual-specificity RNA meth... 500 7.7e-48 1
UNIPROTKB|P36979 - symbol:rlmN "23S rRNA m2A2503 methyltr... 482 6.2e-46 1
UNIPROTKB|Q8EC29 - symbol:rlmN "Dual-specificity RNA meth... 466 3.1e-44 1
TIGR_CMR|SO_3315 - symbol:SO_3315 "conserved hypothetical... 466 3.1e-44 1
TIGR_CMR|CJE_1882 - symbol:CJE_1882 "radical SAM enzyme, ... 465 3.9e-44 1
UNIPROTKB|Q9KTX3 - symbol:rlmN "Dual-specificity RNA meth... 464 5.0e-44 1
TIGR_CMR|VC_0757 - symbol:VC_0757 "conserved hypothetical... 464 5.0e-44 1
UNIPROTKB|Q83C77 - symbol:rlmN "Dual-specificity RNA meth... 463 6.4e-44 1
TIGR_CMR|CBU_1252 - symbol:CBU_1252 "radical SAM enzyme, ... 463 6.4e-44 1
UNIPROTKB|Q74E53 - symbol:rlmN "Dual-specificity RNA meth... 462 8.1e-44 1
TIGR_CMR|GSU_1111 - symbol:GSU_1111 "conserved hypothetic... 462 8.1e-44 1
UNIPROTKB|Q47WB7 - symbol:rlmN "Dual-specificity RNA meth... 456 3.5e-43 1
TIGR_CMR|CPS_4255 - symbol:CPS_4255 "radical SAM enzyme, ... 456 3.5e-43 1
TAIR|locus:2043225 - symbol:AT2G39670 species:3702 "Arabi... 455 4.5e-43 1
UNIPROTKB|Q3AC22 - symbol:rlmN "Probable dual-specificity... 451 1.2e-42 1
TIGR_CMR|CHY_1480 - symbol:CHY_1480 "radical SAM enzyme, ... 451 1.2e-42 1
TAIR|locus:2195608 - symbol:AT1G60230 species:3702 "Arabi... 449 1.9e-42 1
UNIPROTKB|Q81WH4 - symbol:rlmN "Probable dual-specificity... 430 2.0e-40 1
TIGR_CMR|BA_4002 - symbol:BA_4002 "conserved hypothetical... 430 2.0e-40 1
UNIPROTKB|O83107 - symbol:rlmN "Probable dual-specificity... 424 8.7e-40 1
UNIPROTKB|Q723G9 - symbol:rlmN "Probable dual-specificity... 413 1.3e-38 1
UNIPROTKB|P0A644 - symbol:rlmN "Probable dual-specificity... 406 7.0e-38 1
GENEDB_PFALCIPARUM|PF14_0066 - symbol:PF14_0066 "radical ... 405 8.9e-38 1
UNIPROTKB|Q8IM25 - symbol:PF14_0066 "Radical SAM protein,... 405 8.9e-38 1
TIGR_CMR|SPO_3346 - symbol:SPO_3346 "radical SAM enzyme, ... 368 7.4e-34 1
TIGR_CMR|CHY_0937 - symbol:CHY_0937 "radical SAM domain p... 107 0.00077 1
>TAIR|locus:2091161 [details] [associations]
symbol:AT3G19630 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM;IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006396 "RNA processing" evidence=RCA] InterPro:IPR004383
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 GO:GO:0005737 EMBL:CP002686 Gene3D:3.20.20.70
GO:GO:0051536 GO:GO:0006364 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0820 HOGENOM:HOG000217991 TIGRFAMs:TIGR00048
EMBL:BT003921 EMBL:BT005008 IPI:IPI00533080 RefSeq:NP_188597.1
UniGene:At.38376 ProteinModelPortal:Q84JV6 SMR:Q84JV6 STRING:Q84JV6
PRIDE:Q84JV6 DNASU:821500 EnsemblPlants:AT3G19630.1 GeneID:821500
KEGG:ath:AT3G19630 TAIR:At3g19630 InParanoid:Q84JV6 OMA:IFIEYIM
PhylomeDB:Q84JV6 ProtClustDB:CLSN2684692 ArrayExpress:Q84JV6
Genevestigator:Q84JV6 Uniprot:Q84JV6
Length = 372
Score = 1186 (422.6 bits), Expect = 1.5e-120, P = 1.5e-120
Identities = 226/288 (78%), Positives = 255/288 (88%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
QNG FVEAV+MRYD+ LG GKPRPGG RSTLCISSQVGCKMGC FCATGTMGFKSNL+
Sbjct: 85 QNGAFVEAVVMRYDTRLGMLGGKPRPGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLT 144
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
SGEIVEQLVHASR+++IRN+VFMGMGEPLNNY A+VEAVR+M PFQ+SPKRIT+STVG
Sbjct: 145 SGEIVEQLVHASRIADIRNIVFMGMGEPLNNYNAVVEAVRVMLNQPFQLSPKRITISTVG 204
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
IVHAINK H+DLPG++LAVSLHAPVQ++RCQIMPAARAFPL+KLM+AL+ +QKNSQQKIF
Sbjct: 205 IVHAINKLHNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNSQQKIF 264
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
IEYIMLDGVND+EQHAH LG+LL+TFQVV+NLIPFNPIGS SQF TSS VS FQKILR
Sbjct: 265 IEYIMLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQGVSRFQKILR 324
Query: 244 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCI 291
+Y IRTT+RK+MGQDISGACGQLVVN PD T + DIEDL +
Sbjct: 325 ETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKTPGTVELRDIEDLLL 372
>DICTYBASE|DDB_G0288255 [details] [associations]
symbol:DDB_G0288255 "putative ribosomal RNA large
subunit methyltransferase N" species:44689 "Dictyostelium
discoideum" [GO:0051536 "iron-sulfur cluster binding" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0001510 "RNA methylation" evidence=IEA] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
dictyBase:DDB_G0288255 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0051536 EMBL:AAFI02000109 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 eggNOG:COG0820 TIGRFAMs:TIGR00048 OMA:EMVFIPD
RefSeq:XP_636811.1 ProteinModelPortal:Q54J76 STRING:Q54J76
EnsemblProtists:DDB0304824 GeneID:8626528 KEGG:ddi:DDB_G0288255
InParanoid:Q54J76 Uniprot:Q54J76
Length = 407
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 115/271 (42%), Positives = 166/271 (61%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P G R TLC+SSQVGC C FC TGT F NL++ EIV Q++ + N
Sbjct: 141 PEGKRGTLCVSSQVGCTFACTFCHTGTQKFIRNLTASEIVSQVIATRHVLNDFTDSSIKR 200
Query: 80 -IRNVVFMGMGEPLNNYAALVEAVRIMTGLP--FQVSPKRITVSTVGIVHAINKFHSDLP 136
+ N+VFMG GEP NY + +A++I+T P + +ITVST G+V I++ SD P
Sbjct: 201 TLTNIVFMGQGEPFYNYRNVSKAIKIITD-PNGLAIGKSKITVSTSGVVPLIDRLGSDFP 259
Query: 137 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEE 196
G+ LA+SLH+ R +I+PA R +P+ +L+ A ++ KN +++I IEY+ML GVND E
Sbjct: 260 GIGLAISLHSANDKTRSEIVPANRQWPISELVEACIKFSKNCKERITIEYVMLKGVNDSE 319
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
Q A+ L KL ++F VNLIPFNP SQ+++SS + +S F KIL I+ T+R+
Sbjct: 320 QDAYDLVKLSKSFPSFVNLIPFNPWPG-SQYKSSSKETISQFSKILDDK-GIKVTIRQPR 377
Query: 257 GQDISGACGQLVVNLPDKISAKSTPPVTDIE 287
G+DI ACGQL +I+ K P+ +++
Sbjct: 378 GRDILAACGQLNTESIKEIN-KPIQPLENLD 407
>UNIPROTKB|Q603C0 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 GO:GO:0008033 EMBL:AE017282
GenomeReviews:AE017282_GR GO:GO:0001510 eggNOG:COG0820 KO:K06941
OMA:MACDFCA GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:YP_115280.1 ProteinModelPortal:Q603C0 GeneID:3104120
KEGG:mca:MCA2887 PATRIC:22609656 Uniprot:Q603C0
Length = 366
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 109/252 (43%), Positives = 160/252 (63%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL-VHASRLSN---IRNVV 84
P R+TLC+SSQVGC + C+FC+T GF NL++ EI+ QL V RL I NVV
Sbjct: 107 PDEGRNTLCVSSQVGCSLECSFCSTARQGFNRNLTTAEIIGQLWVAQHRLDEEQRISNVV 166
Query: 85 FMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N+ +V A R+M + +S +R+T+ST GIV A+++ +++ ++LAVS
Sbjct: 167 LMGMGEPLLNFGNVVAATRLMMDDFAYGLSKRRVTLSTSGIVPALDRL-AEVSDISLAVS 225
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQL 202
LHAP +R +++P R +P+ +L+ A K Y +++K+ EY+MLDGVND +HA L
Sbjct: 226 LHAPDDTLRNELVPINRKYPIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARAL 285
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
+LL VNLIPFNP + S +R S + ++ F + L+ + + TT RK G+DI
Sbjct: 286 VRLLSHVPSKVNLIPFNPFPN-SAYRCSHPETIARFAQTLQDA-GLITTTRKTRGRDIDA 343
Query: 263 ACGQLVVNLPDK 274
ACGQLV + D+
Sbjct: 344 ACGQLVGKVNDR 355
>UNIPROTKB|P36979 [details] [associations]
symbol:rlmN "23S rRNA m2A2503 methyltransferase and tRNA
m2A37 methyltransferase" species:83333 "Escherichia coli K-12"
[GO:0000049 "tRNA binding" evidence=IDA] [GO:0002935 "tRNA
(adenine-C2-)-methyltransferase activity" evidence=IMP;IDA]
[GO:0030488 "tRNA methylation" evidence=IMP;IDA] [GO:0070475 "rRNA
base methylation" evidence=IMP] [GO:0046677 "response to
antibiotic" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0070040 "rRNA (adenine-C2-)-methyltransferase activity"
evidence=IEA;IMP;IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0046677 GO:GO:0051539
GO:GO:0000049 GO:GO:0070475 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 ProtClustDB:PRK11194
EMBL:U02965 PIR:D65028 RefSeq:NP_417012.1 RefSeq:YP_490745.1
PDB:3RF9 PDB:3RFA PDBsum:3RF9 PDBsum:3RFA ProteinModelPortal:P36979
SMR:P36979 DIP:DIP-12035N IntAct:P36979 MINT:MINT-1220055
PaxDb:P36979 PRIDE:P36979 EnsemblBacteria:EBESCT00000004286
EnsemblBacteria:EBESCT00000016514 GeneID:12932308 GeneID:946249
KEGG:ecj:Y75_p2470 KEGG:eco:b2517 PATRIC:32120427 EchoBASE:EB2301
EcoGene:EG12401 OMA:IYHFGVS BioCyc:EcoCyc:EG12401-MONOMER
BioCyc:ECOL316407:JW2501-MONOMER BioCyc:MetaCyc:EG12401-MONOMER
Genevestigator:P36979 GO:GO:0002935 Uniprot:P36979
Length = 384
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 109/259 (42%), Positives = 157/259 (60%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ------LVHASRLSN--- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q +V A++++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>UNIPROTKB|Q8EC29 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 ProtClustDB:PRK11194
OMA:IYHFGVS RefSeq:NP_718869.1 ProteinModelPortal:Q8EC29
GeneID:1171000 KEGG:son:SO_3315 PATRIC:23526306 Uniprot:Q8EC29
Length = 373
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 102/259 (39%), Positives = 153/259 (59%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EIV Q+ S
Sbjct: 99 PEDDRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKETGERP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D +
Sbjct: 159 ITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 195
LAVS+HAP ++R ++P + +PL++ + ++ Y + N+ + ++ +EY+MLD +ND
Sbjct: 218 ALAVSIHAPNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDS 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AH+L +L++ VNLIPFNP S + SS+ ++ F K+L Y + VRK
Sbjct: 278 TEQAHELAQLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 336 RGDDIDAACGQLAGDIRDR 354
>TIGR_CMR|SO_3315 [details] [associations]
symbol:SO_3315 "conserved hypothetical protein TIGR00048"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 ProtClustDB:PRK11194
OMA:IYHFGVS RefSeq:NP_718869.1 ProteinModelPortal:Q8EC29
GeneID:1171000 KEGG:son:SO_3315 PATRIC:23526306 Uniprot:Q8EC29
Length = 373
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 102/259 (39%), Positives = 153/259 (59%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EIV Q+ S
Sbjct: 99 PEDDRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKETGERP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D +
Sbjct: 159 ITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 195
LAVS+HAP ++R ++P + +PL++ + ++ Y + N+ + ++ +EY+MLD +ND
Sbjct: 218 ALAVSIHAPNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDS 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AH+L +L++ VNLIPFNP S + SS+ ++ F K+L Y + VRK
Sbjct: 278 TEQAHELAQLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 336 RGDDIDAACGQLAGDIRDR 354
>TIGR_CMR|CJE_1882 [details] [associations]
symbol:CJE_1882 "radical SAM enzyme, Cfr family"
species:195099 "Campylobacter jejuni RM1221" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 HOGENOM:HOG000217991
KO:K06941 OMA:MACDFCA GO:GO:0070040 TIGRFAMs:TIGR00048
RefSeq:YP_179852.1 ProteinModelPortal:Q5HS83 STRING:Q5HS83
GeneID:3230641 KEGG:cjr:CJE1882 PATRIC:20045594
ProtClustDB:PRK14462 BioCyc:CJEJ195099:GJC0-1921-MONOMER
Uniprot:Q5HS83
Length = 356
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 104/267 (38%), Positives = 162/267 (60%)
Query: 9 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 68
+E+V++ GK R R T+C+SSQVGCK GC+FC T G K NLS+GEIV
Sbjct: 88 IESVLLPMKEEKIDAEGK-RISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIV 146
Query: 69 EQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVS 120
Q++ + +NI N+V+MGMGEPL+N + +AV+I+ GL +SP+R T+S
Sbjct: 147 GQILWIKKQNNIPYERRINIVYMGMGEPLDNLKNVSKAVKILAQNEGLA--ISPRRQTIS 204
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
T G+ I + G+ LA+SLHA ++R ++MP +A+ + +M+A++E+ + ++
Sbjct: 205 TSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRK 264
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
++ EY+++DG+ND+ +HA +L KLL + VNLI FNP R S ++ + FQ
Sbjct: 265 RVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENAIK-FQD 323
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQL 267
+L + T+R+ G DIS ACGQL
Sbjct: 324 LLSNK-GVTCTIRESKGLDISAACGQL 349
>UNIPROTKB|Q9KTX3 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 ProtClustDB:PRK11194 PIR:D82283
RefSeq:NP_230406.1 ProteinModelPortal:Q9KTX3 DNASU:2615300
GeneID:2615300 KEGG:vch:VC0757 PATRIC:20080625 Uniprot:Q9KTX3
Length = 373
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 106/259 (40%), Positives = 151/259 (58%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------ 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R L
Sbjct: 99 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V + + + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQID-V 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 195
LA+SLHAP +R +IMP + +E + ++ Y N+ + K+ +EY++LD VND
Sbjct: 218 ALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDG 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L +LL+ +NLIPFNP S ++ S+ ++ FQK L Y T+RK
Sbjct: 278 TEHAHELAELLKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>TIGR_CMR|VC_0757 [details] [associations]
symbol:VC_0757 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
eggNOG:COG0820 KO:K06941 OMA:MACDFCA GO:GO:0070040
TIGRFAMs:TIGR00048 ProtClustDB:PRK11194 PIR:D82283
RefSeq:NP_230406.1 ProteinModelPortal:Q9KTX3 DNASU:2615300
GeneID:2615300 KEGG:vch:VC0757 PATRIC:20080625 Uniprot:Q9KTX3
Length = 373
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 106/259 (40%), Positives = 151/259 (58%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------ 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R L
Sbjct: 99 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V + + + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQID-V 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 195
LA+SLHAP +R +IMP + +E + ++ Y N+ + K+ +EY++LD VND
Sbjct: 218 ALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDG 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L +LL+ +NLIPFNP S ++ S+ ++ FQK L Y T+RK
Sbjct: 278 TEHAHELAELLKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>UNIPROTKB|Q83C77 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:NP_820246.1 ProteinModelPortal:Q83C77 GeneID:1209157
KEGG:cbu:CBU_1252 PATRIC:17931237 ProtClustDB:CLSK914643
BioCyc:CBUR227377:GJ7S-1238-MONOMER Uniprot:Q83C77
Length = 370
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 103/252 (40%), Positives = 153/252 (60%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----IRNVV 84
P R TLC+SSQVGC + C+FCATG GF NL+ EI+ Q+ A+RL I NVV
Sbjct: 98 PDRKRGTLCVSSQVGCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPYKITNVV 157
Query: 85 FMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL NY A+V A+ +M + +S R+T+ST G++ A+ + + P ++LAVS
Sbjct: 158 MMGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESP-VSLAVS 216
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQL 202
LHAP +R ++P + + L++L+ ++Y + S++ + EY+M++G+ND A QL
Sbjct: 217 LHAPNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQL 276
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
+LL +NLIPFN + +R S++ +S FQK L + T VR+ G DI+G
Sbjct: 277 IRLLADVPCKINLIPFNSFQGTA-YRCSTESAISVFQKCLMDA-GFNTRVRRTRGDDIAG 334
Query: 263 ACGQLVVNLPDK 274
ACGQL D+
Sbjct: 335 ACGQLAGQFHDR 346
>TIGR_CMR|CBU_1252 [details] [associations]
symbol:CBU_1252 "radical SAM enzyme, Cfr family"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:NP_820246.1 ProteinModelPortal:Q83C77 GeneID:1209157
KEGG:cbu:CBU_1252 PATRIC:17931237 ProtClustDB:CLSK914643
BioCyc:CBUR227377:GJ7S-1238-MONOMER Uniprot:Q83C77
Length = 370
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 103/252 (40%), Positives = 153/252 (60%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----IRNVV 84
P R TLC+SSQVGC + C+FCATG GF NL+ EI+ Q+ A+RL I NVV
Sbjct: 98 PDRKRGTLCVSSQVGCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPYKITNVV 157
Query: 85 FMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL NY A+V A+ +M + +S R+T+ST G++ A+ + + P ++LAVS
Sbjct: 158 MMGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESP-VSLAVS 216
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQL 202
LHAP +R ++P + + L++L+ ++Y + S++ + EY+M++G+ND A QL
Sbjct: 217 LHAPNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQL 276
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
+LL +NLIPFN + +R S++ +S FQK L + T VR+ G DI+G
Sbjct: 277 IRLLADVPCKINLIPFNSFQGTA-YRCSTESAISVFQKCLMDA-GFNTRVRRTRGDDIAG 334
Query: 263 ACGQLVVNLPDK 274
ACGQL D+
Sbjct: 335 ACGQLAGQFHDR 346
>UNIPROTKB|Q74E53 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 OMA:IYHFGVS
RefSeq:NP_952164.1 ProteinModelPortal:Q74E53 GeneID:2688552
KEGG:gsu:GSU1111 PATRIC:22024984 ProtClustDB:PRK14463
BioCyc:GSUL243231:GH27-1106-MONOMER Uniprot:Q74E53
Length = 360
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 109/263 (41%), Positives = 148/263 (56%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLCISSQVGC M C FC TGT NL++ EIV Q+ R +RN+VFMGM
Sbjct: 98 PEEDRNTLCISSQVGCAMACEFCLTGTFRLTRNLTTAEIVNQVCAVQRDVPVRNIVFMGM 157
Query: 89 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GEPL N ++ A++IM GL F S +RITVST G+V + + + +NLAVSL+
Sbjct: 158 GEPLANLDNVIRALQIMLHDDGLQF--STRRITVSTAGLVPEMERLGRSVT-VNLAVSLN 214
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 205
A ++R +IMP R +PL L++A + + ++KI IEY++L GVND A +L +L
Sbjct: 215 ATTDELRDRIMPINRKYPLAVLLDACRRFPLPGRRKITIEYVLLGGVNDTLDDAKRLVRL 274
Query: 206 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 265
L +NLIPFN S FR+ S D + F + L + R G DIS ACG
Sbjct: 275 LSDIPSKINLIPFNEHEGCS-FRSPSQDAIDRFHRYLLDKH-FTVITRSSRGADISAACG 332
Query: 266 QLVVNLPDKISAKSTPPVTDIED 288
QL L D + ++ D
Sbjct: 333 QLKGKL-DALKPSGAGKQIEVSD 354
>TIGR_CMR|GSU_1111 [details] [associations]
symbol:GSU_1111 "conserved hypothetical protein TIGR00048"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 OMA:IYHFGVS
RefSeq:NP_952164.1 ProteinModelPortal:Q74E53 GeneID:2688552
KEGG:gsu:GSU1111 PATRIC:22024984 ProtClustDB:PRK14463
BioCyc:GSUL243231:GH27-1106-MONOMER Uniprot:Q74E53
Length = 360
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 109/263 (41%), Positives = 148/263 (56%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLCISSQVGC M C FC TGT NL++ EIV Q+ R +RN+VFMGM
Sbjct: 98 PEEDRNTLCISSQVGCAMACEFCLTGTFRLTRNLTTAEIVNQVCAVQRDVPVRNIVFMGM 157
Query: 89 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GEPL N ++ A++IM GL F S +RITVST G+V + + + +NLAVSL+
Sbjct: 158 GEPLANLDNVIRALQIMLHDDGLQF--STRRITVSTAGLVPEMERLGRSVT-VNLAVSLN 214
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 205
A ++R +IMP R +PL L++A + + ++KI IEY++L GVND A +L +L
Sbjct: 215 ATTDELRDRIMPINRKYPLAVLLDACRRFPLPGRRKITIEYVLLGGVNDTLDDAKRLVRL 274
Query: 206 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 265
L +NLIPFN S FR+ S D + F + L + R G DIS ACG
Sbjct: 275 LSDIPSKINLIPFNEHEGCS-FRSPSQDAIDRFHRYLLDKH-FTVITRSSRGADISAACG 332
Query: 266 QLVVNLPDKISAKSTPPVTDIED 288
QL L D + ++ D
Sbjct: 333 QLKGKL-DALKPSGAGKQIEVSD 354
>UNIPROTKB|Q47WB7 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01849 InterPro:IPR004383
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013785
Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737
Gene3D:3.20.20.70 GO:GO:0046872 GO:GO:0051539 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008033 GO:GO:0001510
eggNOG:COG0820 KO:K06941 OMA:MACDFCA GO:GO:0070040
TIGRFAMs:TIGR00048 RefSeq:YP_270905.1 ProteinModelPortal:Q47WB7
STRING:Q47WB7 GeneID:3518965 KEGG:cps:CPS_4255 PATRIC:21471375
HOGENOM:HOG000217992 ProtClustDB:PRK11194
BioCyc:CPSY167879:GI48-4265-MONOMER Uniprot:Q47WB7
Length = 386
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 102/258 (39%), Positives = 152/258 (58%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL------VHASRLSNIR- 81
P R+TLC+SSQVGC + C FCAT GF NLS EI+ Q+ + A+R++ R
Sbjct: 101 PENDRATLCVSSQVGCALECTFCATAQQGFNRNLSMAEIIGQVWRVANDIGATRIAGTRP 160
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
N+V MGMGEPL N L+ A+ M L + +S +R+TVST G+V A++ + +
Sbjct: 161 ITNIVMMGMGEPLLNMKNLIPALDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKID-C 219
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEE 196
LA+S+HAP +R +++P + +PLE + A Y + S+ ++ IEY+MLD VND
Sbjct: 220 ALAISIHAPNNKLRDELVPINKKYPLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDST 279
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
AH+L L+ +NLIPFNP S + SS+ ++ F K+L+ SY + R+
Sbjct: 280 DQAHELAHALKGLPSKINLIPFNPYPG-SPYSRSSNSRIDRFDKVLQ-SYGLTVITRRTR 337
Query: 257 GQDISGACGQLVVNLPDK 274
G+DI ACGQL ++ D+
Sbjct: 338 GEDIDAACGQLAGDVFDR 355
>TIGR_CMR|CPS_4255 [details] [associations]
symbol:CPS_4255 "radical SAM enzyme, Cfr family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 RefSeq:YP_270905.1
ProteinModelPortal:Q47WB7 STRING:Q47WB7 GeneID:3518965
KEGG:cps:CPS_4255 PATRIC:21471375 HOGENOM:HOG000217992
ProtClustDB:PRK11194 BioCyc:CPSY167879:GI48-4265-MONOMER
Uniprot:Q47WB7
Length = 386
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 102/258 (39%), Positives = 152/258 (58%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL------VHASRLSNIR- 81
P R+TLC+SSQVGC + C FCAT GF NLS EI+ Q+ + A+R++ R
Sbjct: 101 PENDRATLCVSSQVGCALECTFCATAQQGFNRNLSMAEIIGQVWRVANDIGATRIAGTRP 160
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
N+V MGMGEPL N L+ A+ M L + +S +R+TVST G+V A++ + +
Sbjct: 161 ITNIVMMGMGEPLLNMKNLIPALDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKID-C 219
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEE 196
LA+S+HAP +R +++P + +PLE + A Y + S+ ++ IEY+MLD VND
Sbjct: 220 ALAISIHAPNNKLRDELVPINKKYPLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDST 279
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
AH+L L+ +NLIPFNP S + SS+ ++ F K+L+ SY + R+
Sbjct: 280 DQAHELAHALKGLPSKINLIPFNPYPG-SPYSRSSNSRIDRFDKVLQ-SYGLTVITRRTR 337
Query: 257 GQDISGACGQLVVNLPDK 274
G+DI ACGQL ++ D+
Sbjct: 338 GEDIDAACGQLAGDVFDR 355
>TAIR|locus:2043225 [details] [associations]
symbol:AT2G39670 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006364 "rRNA processing"
evidence=IEA;RCA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
[GO:0009658 "chloroplast organization" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
GO:GO:0005737 EMBL:CP002685 Gene3D:3.20.20.70 GO:GO:0051536
GO:GO:0006364 GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00048
IPI:IPI00528130 RefSeq:NP_850319.1 UniGene:At.24979
ProteinModelPortal:F4IVY6 SMR:F4IVY6 PRIDE:F4IVY6
EnsemblPlants:AT2G39670.2 GeneID:818550 KEGG:ath:AT2G39670
OMA:KEHAEAV PhylomeDB:F4IVY6 Uniprot:F4IVY6
Length = 431
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 101/242 (41%), Positives = 148/242 (61%)
Query: 30 GGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SNIRNVVFMG 87
G R T C+SSQVGC + C+FCATG GF NL EI+EQ++ + + NVVFMG
Sbjct: 166 GITRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRVTNVVFMG 225
Query: 88 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
MGEP+ N ++++A R + ++ + IT+STVG+ + I K S LAVSLHAP
Sbjct: 226 MGEPMLNLKSVLDAHRCLNK-DIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAP 284
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
Q +R +I+P+A+A+PLE +M ++Y + + +++ EY +L GVND+ +HA +L +LL
Sbjct: 285 NQSLREKIVPSAKAYPLEAIMKDCRDYFQETNRRVSFEYALLAGVNDQVEHAVELAELLR 344
Query: 208 TFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 265
+ VNLIP+NPI S+++ V +F L S I +VR+ G D S ACG
Sbjct: 345 EWGKTYHVNLIPYNPIEG-SEYQRPYKKAVLAFAAALE-SRKITASVRQTRGLDASAACG 402
Query: 266 QL 267
QL
Sbjct: 403 QL 404
>UNIPROTKB|Q3AC22 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0051539
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 HOGENOM:HOG000217991
KO:K06941 OMA:MACDFCA GO:GO:0070040 TIGRFAMs:TIGR00048
RefSeq:YP_360312.1 ProteinModelPortal:Q3AC22 STRING:Q3AC22
GeneID:3728344 KEGG:chy:CHY_1480 PATRIC:21276091
BioCyc:CHYD246194:GJCN-1479-MONOMER Uniprot:Q3AC22
Length = 342
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 94/237 (39%), Positives = 153/237 (64%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV--HASRLSNIRNVVFMGMGEP 91
+T+C+S+QVGCKMGC FCATG GF NL++GE++EQ++ AS I VV MG GEP
Sbjct: 101 NTVCLSTQVGCKMGCKFCATGLGGFSRNLTAGEMIEQILVLKASSSEKITRVVLMGSGEP 160
Query: 92 LNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 150
L+N+ +++ +R + +S ++ITVST G+V I + + LA+SLHAP
Sbjct: 161 LDNFTEVLKFMRKINEKDCLNISYRKITVSTCGMVPQIKALAEEKLPVTLAISLHAPDDA 220
Query: 151 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 210
+R +++P + + L +L++A + + +++ EY +++ VND +HA +L +LL+
Sbjct: 221 LRNELIPINKRWGLAELLDAAWYFIDKTGRRVSFEYALIENVNDTVEHALKLAQLLQRKL 280
Query: 211 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V VNLIP+N I F+T S +K++ F+++L+ + I TVR+++G +I GACGQL
Sbjct: 281 VHVNLIPYNTIEK-RNFKTPSVEKINKFKEVLKRA-GIPVTVRRELGDEIDGACGQL 335
>TIGR_CMR|CHY_1480 [details] [associations]
symbol:CHY_1480 "radical SAM enzyme, Cfr family"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01849 InterPro:IPR004383
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013785
Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737
Gene3D:3.20.20.70 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 RefSeq:YP_360312.1
ProteinModelPortal:Q3AC22 STRING:Q3AC22 GeneID:3728344
KEGG:chy:CHY_1480 PATRIC:21276091
BioCyc:CHYD246194:GJCN-1479-MONOMER Uniprot:Q3AC22
Length = 342
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 94/237 (39%), Positives = 153/237 (64%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV--HASRLSNIRNVVFMGMGEP 91
+T+C+S+QVGCKMGC FCATG GF NL++GE++EQ++ AS I VV MG GEP
Sbjct: 101 NTVCLSTQVGCKMGCKFCATGLGGFSRNLTAGEMIEQILVLKASSSEKITRVVLMGSGEP 160
Query: 92 LNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 150
L+N+ +++ +R + +S ++ITVST G+V I + + LA+SLHAP
Sbjct: 161 LDNFTEVLKFMRKINEKDCLNISYRKITVSTCGMVPQIKALAEEKLPVTLAISLHAPDDA 220
Query: 151 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 210
+R +++P + + L +L++A + + +++ EY +++ VND +HA +L +LL+
Sbjct: 221 LRNELIPINKRWGLAELLDAAWYFIDKTGRRVSFEYALIENVNDTVEHALKLAQLLQRKL 280
Query: 211 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V VNLIP+N I F+T S +K++ F+++L+ + I TVR+++G +I GACGQL
Sbjct: 281 VHVNLIPYNTIEK-RNFKTPSVEKINKFKEVLKRA-GIPVTVRRELGDEIDGACGQL 335
>TAIR|locus:2195608 [details] [associations]
symbol:AT1G60230 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 SMART:SM00729 EMBL:CP002684
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0051536 GO:GO:0006364
GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
OMA:IYHFGVS UniGene:At.43275 UniGene:At.64986 EMBL:AY054695
EMBL:AY081476 IPI:IPI00549143 RefSeq:NP_564755.1
ProteinModelPortal:Q93XX3 SMR:Q93XX3 EnsemblPlants:AT1G60230.1
GeneID:842318 KEGG:ath:AT1G60230 TAIR:At1g60230 InParanoid:Q93XX3
PhylomeDB:Q93XX3 ProtClustDB:CLSN2688935 ArrayExpress:Q93XX3
Genevestigator:Q93XX3 Uniprot:Q93XX3
Length = 458
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 107/245 (43%), Positives = 145/245 (59%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMG 87
R+T+C+SSQVGC M C FC TG MG K NL++ EIVEQ V+A RL +I NVVFMG
Sbjct: 195 RTTVCVSSQVGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVGSITNVVFMG 254
Query: 88 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
MGEP +N +++A IM GL F SP+++TVST G+V + +F + LAVSL
Sbjct: 255 MGEPFHNIDNVIKAANIMVDENGLHF--SPRKVTVSTSGLVPQLKRFLRE-SNCALAVSL 311
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKE-YQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 203
+A +VR IMP R + L L+ L+E + K+ EY+ML GVND A +L
Sbjct: 312 NATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDARRLV 371
Query: 204 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISG 262
+L++ +NLI FNP S SQF + +DK+ F+ +L G + +R G D
Sbjct: 372 ELVQGIPCKINLIQFNP-HSGSQFIQTEEDKMIKFRNVLAEGGCTV--LMRFSRGNDQMA 428
Query: 263 ACGQL 267
ACGQL
Sbjct: 429 ACGQL 433
>UNIPROTKB|Q81WH4 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:1392 "Bacillus anthracis"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
RefSeq:NP_846244.1 RefSeq:YP_020642.1 RefSeq:YP_029966.1
ProteinModelPortal:Q81WH4 DNASU:1086738
EnsemblBacteria:EBBACT00000012863 EnsemblBacteria:EBBACT00000014022
EnsemblBacteria:EBBACT00000019317 GeneID:1086738 GeneID:2815920
GeneID:2848017 KEGG:ban:BA_4002 KEGG:bar:GBAA_4002 KEGG:bat:BAS3715
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 OMA:MACDFCA
ProtClustDB:PRK14455 BioCyc:BANT260799:GJAJ-3773-MONOMER
BioCyc:BANT261594:GJ7F-3890-MONOMER GO:GO:0070040
TIGRFAMs:TIGR00048 Uniprot:Q81WH4
Length = 362
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 93/242 (38%), Positives = 144/242 (59%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGM 88
+++C+++QVGC++GC FCA+ G K NL +GEIV Q+V R + ++V MG+
Sbjct: 115 NSICVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDESEERVSSLVVMGI 174
Query: 89 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GEP +NY L+ +RI+ GL + + +TVST GI+ I KF + +N A+SLH
Sbjct: 175 GEPFDNYDNLMGFLRIINHEKGL--HIGARHMTVSTSGIIPKIYKFAEEDLQINFAISLH 232
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 205
AP ++R ++MP RA+ L LM A+K Y + ++I EY + G ND+ +HA +L L
Sbjct: 233 APNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGRRITFEYGLFGGENDQVEHAEELAAL 292
Query: 206 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 265
L+ + VNLIP N + RT + ++ F+K L+ + T+R++ G DI ACG
Sbjct: 293 LKGVKCHVNLIPVNYVPERDYVRTPRE-QIFLFEKTLKDR-GVNVTIRREQGHDIDAACG 350
Query: 266 QL 267
QL
Sbjct: 351 QL 352
>TIGR_CMR|BA_4002 [details] [associations]
symbol:BA_4002 "conserved hypothetical protein TIGR00048"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
RefSeq:NP_846244.1 RefSeq:YP_020642.1 RefSeq:YP_029966.1
ProteinModelPortal:Q81WH4 DNASU:1086738
EnsemblBacteria:EBBACT00000012863 EnsemblBacteria:EBBACT00000014022
EnsemblBacteria:EBBACT00000019317 GeneID:1086738 GeneID:2815920
GeneID:2848017 KEGG:ban:BA_4002 KEGG:bar:GBAA_4002 KEGG:bat:BAS3715
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 OMA:MACDFCA
ProtClustDB:PRK14455 BioCyc:BANT260799:GJAJ-3773-MONOMER
BioCyc:BANT261594:GJ7F-3890-MONOMER GO:GO:0070040
TIGRFAMs:TIGR00048 Uniprot:Q81WH4
Length = 362
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 93/242 (38%), Positives = 144/242 (59%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGM 88
+++C+++QVGC++GC FCA+ G K NL +GEIV Q+V R + ++V MG+
Sbjct: 115 NSICVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDESEERVSSLVVMGI 174
Query: 89 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GEP +NY L+ +RI+ GL + + +TVST GI+ I KF + +N A+SLH
Sbjct: 175 GEPFDNYDNLMGFLRIINHEKGL--HIGARHMTVSTSGIIPKIYKFAEEDLQINFAISLH 232
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 205
AP ++R ++MP RA+ L LM A+K Y + ++I EY + G ND+ +HA +L L
Sbjct: 233 APNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGRRITFEYGLFGGENDQVEHAEELAAL 292
Query: 206 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 265
L+ + VNLIP N + RT + ++ F+K L+ + T+R++ G DI ACG
Sbjct: 293 LKGVKCHVNLIPVNYVPERDYVRTPRE-QIFLFEKTLKDR-GVNVTIRREQGHDIDAACG 350
Query: 266 QL 267
QL
Sbjct: 351 QL 352
>UNIPROTKB|O83107 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:243276 "Treponema pallidum subsp.
pallidum str. Nichols" [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
EMBL:AE000520 GenomeReviews:AE000520_GR eggNOG:COG0820 KO:K06941
GO:GO:0070040 TIGRFAMs:TIGR00048 PIR:D71371 RefSeq:NP_218508.1
ProteinModelPortal:O83107 IntAct:O83107 GeneID:2611395
KEGG:tpa:TP0068 PATRIC:20530073 OMA:EMVFIPD ProtClustDB:CLSK218510
Uniprot:O83107
Length = 340
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 96/237 (40%), Positives = 137/237 (57%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSNIRNVVFMGMGEP 91
R T C+S QVGC M C FC TG +GF NLS+ EIVEQ +H R + + NVVFMGMGEP
Sbjct: 100 RKTACLSCQVGCPMACAFCQTGQLGFARNLSASEIVEQFLHLERCVGTLDNVVFMGMGEP 159
Query: 92 LNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 150
+ N A+ A+ I++ + +S KRIT+ST G I + LAVSL
Sbjct: 160 MLNLDAVCRAIEILSHPQGRDLSEKRITISTSGHCRGIYSLADRALQVRLAVSLTTANAP 219
Query: 151 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 210
+R ++MP A L KL +A++ + + S +++ +E ++ GVN E+HA ++
Sbjct: 220 LRARLMPRAAHDSLAKLKSAIRYFNEKSGKRVTLELALMRGVNTSERHAQEVIDFAHGLN 279
Query: 211 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V VNLIP+NP+ S+ F T + +V+ F+ +L + I T R Q G I GACGQL
Sbjct: 280 VHVNLIPWNPVASI-HFETPREVEVAHFEALLMRA-RIPVTRRYQRGNGIGGACGQL 334
>UNIPROTKB|Q723G9 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:265669 "Listeria monocytogenes
serotype 4b str. F2365" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0046872 GO:GO:0051539
GO:GO:0008033 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0001510
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 ProtClustDB:PRK14455
GO:GO:0070040 TIGRFAMs:TIGR00048 RefSeq:YP_013115.1
ProteinModelPortal:Q723G9 STRING:Q723G9 GeneID:2797600
KEGG:lmf:LMOf2365_0509 PATRIC:20322220 OMA:LRTINDD Uniprot:Q723G9
Length = 367
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 92/245 (37%), Positives = 146/245 (59%)
Query: 35 TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMG 87
++C+++QVGC +GC FCA+G + +L++GEIVEQ+++ + RN VV MG
Sbjct: 103 SVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMG 162
Query: 88 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
+GEP +NY +++ +R++ GL + + ITVST G+ I F ++ +NLA+SL
Sbjct: 163 IGEPFDNYDNVMDFLRVINHDKGLA--IGARHITVSTSGLAPRIIDFANEDFQVNLAISL 220
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
HAP ++R IM + + +EKLM A+ Y + ++I EYIML GVND ++ A +L
Sbjct: 221 HAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAA 280
Query: 205 LLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
LL + VNLIP+NP+ + S+ + V +F L+ + I +R++ G DI
Sbjct: 281 LLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKN-GINCVIRREHGTDIDA 339
Query: 263 ACGQL 267
ACGQL
Sbjct: 340 ACGQL 344
>UNIPROTKB|P0A644 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:1773 "Mycobacterium tuberculosis"
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005886 GO:GO:0005737
GO:GO:0005618 Gene3D:3.20.20.70 EMBL:AE000516
GenomeReviews:AE000516_GR GO:GO:0046872 GO:GO:0051539 GO:GO:0008033
EMBL:BX842581 GO:GO:0001510 eggNOG:COG0820 HOGENOM:HOG000217991
KO:K06941 GO:GO:0070040 TIGRFAMs:TIGR00048 PIR:B70924 PIR:C70924
RefSeq:NP_217395.1 RefSeq:NP_217396.1 RefSeq:NP_337458.1
ProteinModelPortal:P0A644 SMR:P0A644 PRIDE:P0A644
EnsemblBacteria:EBMYCT00000003622 EnsemblBacteria:EBMYCT00000071511
GeneID:887156 GeneID:887810 GeneID:925333 KEGG:mtc:MT2947
KEGG:mtu:Rv2879c KEGG:mtu:Rv2880c TubercuList:Rv2879c
TubercuList:Rv2880c ProtClustDB:CLSK792141 Uniprot:P0A644
Length = 364
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 108/275 (39%), Positives = 150/275 (54%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G E+V+MRY PR R+T+CISSQ GC M C FCATG G NLS+
Sbjct: 101 DGTMFESVLMRY----------PR----RNTVCISSQAGCGMACPFCATGQGGLTRNLST 146
Query: 65 GEIVEQL-VHASRLSN-----IRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPK 115
EI+EQ+ A+ L + + NVVFMGMGEPL NYA ++ AV+ +T P F +S +
Sbjct: 147 AEILEQVRAGAAALRDDFGDRLSNVVFMGMGEPLANYARVLAAVQRITARPPSGFGISAR 206
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
+TVSTVG+ AI G+ LA+SLHAP +R ++P + + + ++A + Y
Sbjct: 207 AVTVSTVGLAPAIRNLADARLGVTLALSLHAPDDGLRDTLVPVNNRWRISEALDAARYYA 266
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ---VVVNLIPFNPIGSVSQFRTSSD 232
+ +++ IEY ++ VND+ A LGK L VNLIP NP S + S
Sbjct: 267 NVTGRRVSIEYALIRDVNDQPWRADLLGKRLHRVLGPLAHVNLIPLNPTPG-SDWDASPK 325
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
F K +R + TVR G++IS ACGQL
Sbjct: 326 PVEREFVKRVRAK-GVSCTVRDTRGREISAACGQL 359
>GENEDB_PFALCIPARUM|PF14_0066 [details] [associations]
symbol:PF14_0066 "radical SAM protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0051536 EMBL:AE014187 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 HOGENOM:HOG000217991 TIGRFAMs:TIGR00048
RefSeq:XP_001348239.2 ProteinModelPortal:Q8IM25
EnsemblProtists:PF14_0066:mRNA GeneID:811648 KEGG:pfa:PF14_0066
EuPathDB:PlasmoDB:PF3D7_1406900 KO:K15632 ProtClustDB:CLSZ2428899
Uniprot:Q8IM25
Length = 362
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 92/254 (36%), Positives = 143/254 (56%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVH-ASRLSNIRNVVFMGMG 89
G +LCISSQ+GC GC FCATG +G K L EI +QL++ S+ +I+N+ FMGMG
Sbjct: 96 GSHKSLCISSQIGCSFGCKFCATGQIGIKRQLDIDEITDQLLYFQSKGVDIKNISFMGMG 155
Query: 90 EPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPV 148
EPL N + ++++ F +S +RI +STVG++ I K ++ P +NLA SLH+P
Sbjct: 156 EPLAN-PYVFDSIQFFNDNNLFSISNRRINISTVGLLPGIKKLNNIFPQVNLAFSLHSPF 214
Query: 149 QDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG----K 204
+ R Q++P + FP ++ + L E + ++++I YI++ +ND + HA L K
Sbjct: 215 TEERDQLVPINKLFPFNEVFDLLDERIAKTGRRVWISYILIKNLNDSKDHAEALSDHICK 274
Query: 205 LLETFQVVVN--LIPFNPIGSVSQ-FRTSSD-DKVSSFQKILRGSYNIRTTVRKQMGQDI 260
+ + N LIP+N +V + F D +K+ F+KIL+ + I R G I
Sbjct: 275 RPNNIRYLYNVCLIPYNKAKNVDENFHRLDDAEKILQFEKILKKN-GISFFYRNSFGYSI 333
Query: 261 SGACGQLVVNLPDK 274
ACGQL + K
Sbjct: 334 DAACGQLYADYEPK 347
>UNIPROTKB|Q8IM25 [details] [associations]
symbol:PF14_0066 "Radical SAM protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0051536 EMBL:AE014187 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 HOGENOM:HOG000217991 TIGRFAMs:TIGR00048
RefSeq:XP_001348239.2 ProteinModelPortal:Q8IM25
EnsemblProtists:PF14_0066:mRNA GeneID:811648 KEGG:pfa:PF14_0066
EuPathDB:PlasmoDB:PF3D7_1406900 KO:K15632 ProtClustDB:CLSZ2428899
Uniprot:Q8IM25
Length = 362
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 92/254 (36%), Positives = 143/254 (56%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVH-ASRLSNIRNVVFMGMG 89
G +LCISSQ+GC GC FCATG +G K L EI +QL++ S+ +I+N+ FMGMG
Sbjct: 96 GSHKSLCISSQIGCSFGCKFCATGQIGIKRQLDIDEITDQLLYFQSKGVDIKNISFMGMG 155
Query: 90 EPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPV 148
EPL N + ++++ F +S +RI +STVG++ I K ++ P +NLA SLH+P
Sbjct: 156 EPLAN-PYVFDSIQFFNDNNLFSISNRRINISTVGLLPGIKKLNNIFPQVNLAFSLHSPF 214
Query: 149 QDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG----K 204
+ R Q++P + FP ++ + L E + ++++I YI++ +ND + HA L K
Sbjct: 215 TEERDQLVPINKLFPFNEVFDLLDERIAKTGRRVWISYILIKNLNDSKDHAEALSDHICK 274
Query: 205 LLETFQVVVN--LIPFNPIGSVSQ-FRTSSD-DKVSSFQKILRGSYNIRTTVRKQMGQDI 260
+ + N LIP+N +V + F D +K+ F+KIL+ + I R G I
Sbjct: 275 RPNNIRYLYNVCLIPYNKAKNVDENFHRLDDAEKILQFEKILKKN-GISFFYRNSFGYSI 333
Query: 261 SGACGQLVVNLPDK 274
ACGQL + K
Sbjct: 334 DAACGQLYADYEPK 347
>TIGR_CMR|SPO_3346 [details] [associations]
symbol:SPO_3346 "radical SAM enzyme, Cfr family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0051539
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:YP_168542.1 ProteinModelPortal:Q5LN66 GeneID:3195026
KEGG:sil:SPO3346 PATRIC:23380143 ProtClustDB:CLSK934133
Uniprot:Q5LN66
Length = 393
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 93/257 (36%), Positives = 145/257 (56%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-SRLSN-------- 79
P R TLCISSQVGC + C+FC TGT NL++ EIV Q++ A L
Sbjct: 120 PEEDRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQVMMARDDLGEWPVPGAPK 179
Query: 80 -----IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHS 133
+ N+V MGMGEPL N+ + +A++I M Q+S +RIT+ST G+V I +
Sbjct: 180 DETRLLSNIVLMGMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAE 239
Query: 134 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK-NSQQKIFIEYIMLDGV 192
++ G LA+S HA +VR ++P + + +E+L++AL Y K ++ ++I EY+MLDGV
Sbjct: 240 EI-GCLLAISFHATTDEVRDVLVPINKRWNIEELLSALAAYPKVSNSERITFEYVMLDGV 298
Query: 193 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV--SQFRTSSDDKVSSFQKILRGSYNIRT 250
ND + AH+L + +++ I P + ++ SS++++ +F I+ +
Sbjct: 299 NDSDADAHRLLDHIRRYKIPAK-INLIPFNEWPGAPYKRSSNNRIRAFANIIYQA-GYAA 356
Query: 251 TVRKQMGQDISGACGQL 267
+RK G DI ACGQL
Sbjct: 357 PIRKTRGDDIMAACGQL 373
>TIGR_CMR|CHY_0937 [details] [associations]
symbol:CHY_0937 "radical SAM domain protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 GO:GO:0003824 Gene3D:3.20.20.70
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0008152 GO:GO:0051536
eggNOG:COG0535 RefSeq:YP_359784.1 ProteinModelPortal:Q3ADK0
STRING:Q3ADK0 GeneID:3727236 KEGG:chy:CHY_0937 PATRIC:21275009
HOGENOM:HOG000296273 OMA:DEYVFCG ProtClustDB:CLSK2526675
BioCyc:CHYD246194:GJCN-936-MONOMER InterPro:IPR023821
TIGRFAMs:TIGR04038 Uniprot:Q3ADK0
Length = 198
Score = 107 (42.7 bits), Expect = 0.00077, P = 0.00077
Identities = 48/186 (25%), Positives = 78/186 (41%)
Query: 34 STLCISSQVGCKMGCNFCATGT---MGFKSNLS----SGEIVEQLVHASRLSNIRNVVFM 86
++L I+ C C FC T +G+ L +GEI+ L L VVF
Sbjct: 10 NSLYINLTNRCTNACVFCIRKTEKGVGYDLWLDREPDTGEIIAALKEKDPLK-YEEVVFC 68
Query: 87 GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHS-----DLPGLNLA 141
G GEPL +VE R + ++ K++ ++T G+ N++H +L GL
Sbjct: 69 GYGEPLLRIKEVVEVARWLK----EIGVKKVRINTNGLA---NRYHGRNILPELKGLVDV 121
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALK--EYQKNSQQKIFIEYIMLDGVNDEEQH- 198
+S+ QD + + E LK E K ++ + + +GV+ EE
Sbjct: 122 ISISLNAQDAEAYQKVSRSRYGQEAYAEVLKFIEESKKYIPEVVVTVVRWEGVDVEETKK 181
Query: 199 -AHQLG 203
A +LG
Sbjct: 182 VAERLG 187
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 292 292 0.00090 115 3 11 22 0.37 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 584 (62 KB)
Total size of DFA: 187 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.03u 0.09s 23.12t Elapsed: 00:00:03
Total cpu time: 23.03u 0.09s 23.12t Elapsed: 00:00:03
Start: Fri May 10 17:01:05 2013 End: Fri May 10 17:01:08 2013