BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022752
(292 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449438321|ref|XP_004136937.1| PREDICTED: dual-specificity RNA methyltransferase RlmN 1-like
[Cucumis sativus]
gi|449495695|ref|XP_004159917.1| PREDICTED: dual-specificity RNA methyltransferase RlmN 1-like
[Cucumis sativus]
Length = 384
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 239/289 (82%), Positives = 265/289 (91%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ Q+G FVEAVIMRYD+ LGKY GKPRPGG RSTLCISSQVGCKMGC FCATGTMGFKS
Sbjct: 94 IKLQSGAFVEAVIMRYDTRLGKYGGKPRPGGLRSTLCISSQVGCKMGCRFCATGTMGFKS 153
Query: 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVS 120
NL+SGEIVEQLVHASR S IRN+VFMGMGEPLNNY++LVEAVR M PF +SPKRIT+S
Sbjct: 154 NLTSGEIVEQLVHASRFSQIRNIVFMGMGEPLNNYSSLVEAVRAMMAPPFLLSPKRITIS 213
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
TVGI+HAINK HSDLPGLNLAVSLHAPVQD+RCQIMPAARAFPL+KLM+AL+EYQK SQQ
Sbjct: 214 TVGIIHAINKLHSDLPGLNLAVSLHAPVQDIRCQIMPAARAFPLQKLMDALQEYQKKSQQ 273
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
KI IEYIMLDGVNDEEQHAHQLGKLLETFQV+VNLIPFNPIGS SQF+TSSD+KVS FQ+
Sbjct: 274 KILIEYIMLDGVNDEEQHAHQLGKLLETFQVIVNLIPFNPIGSSSQFKTSSDEKVSVFQQ 333
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDL 289
+LRG+YNIRTT+RKQMGQDISGACGQLVV+LP++ S+K + V DIEDL
Sbjct: 334 VLRGTYNIRTTIRKQMGQDISGACGQLVVSLPNRSSSKQSSVVPDIEDL 382
>gi|224060769|ref|XP_002300266.1| predicted protein [Populus trichocarpa]
gi|222847524|gb|EEE85071.1| predicted protein [Populus trichocarpa]
Length = 373
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 251/292 (85%), Positives = 265/292 (90%), Gaps = 7/292 (2%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
QNG FVEAVIMRYD+ LGKY GKPRPGGPRSTLCISSQVGCKMGC FCATG+MGFK+NLS
Sbjct: 85 QNGAFVEAVIMRYDTRLGKYCGKPRPGGPRSTLCISSQVGCKMGCKFCATGSMGFKNNLS 144
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
SGEIVEQLVHAS LS IRNVVFMGMGEPLNNY+ALVEAVR M+G+PFQ+SPKRITVSTVG
Sbjct: 145 SGEIVEQLVHASCLSQIRNVVFMGMGEPLNNYSALVEAVRAMSGVPFQLSPKRITVSTVG 204
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
I+HAINK H DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM+AL+ YQKNS QKIF
Sbjct: 205 IIHAINKLHKDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMDALQVYQKNSMQKIF 264
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
IEYIMLDGVNDEEQHAHQLGKLLETF VVVNLIPFNPIGS+SQFRTSS++KV FQKILR
Sbjct: 265 IEYIMLDGVNDEEQHAHQLGKLLETFDVVVNLIPFNPIGSLSQFRTSSEEKVLRFQKILR 324
Query: 244 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPP---VTDIEDLCIR 292
G NIRTTVRKQMGQDISGACGQLVVNLPD + PP VTDIEDL R
Sbjct: 325 GVNNIRTTVRKQMGQDISGACGQLVVNLPD----EKKPPNLGVTDIEDLVSR 372
>gi|225428987|ref|XP_002265287.1| PREDICTED: ribosomal RNA large subunit methyltransferase N [Vitis
vinifera]
gi|147817733|emb|CAN60150.1| hypothetical protein VITISV_044331 [Vitis vinifera]
gi|296083052|emb|CBI22456.3| unnamed protein product [Vitis vinifera]
Length = 372
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/286 (84%), Positives = 258/286 (90%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
QNG FVEAVIMRYD+ LGKY GKPRPGGPRSTLCISSQVGCKMGC FCATG+MGFKSNLS
Sbjct: 85 QNGSFVEAVIMRYDTRLGKYGGKPRPGGPRSTLCISSQVGCKMGCKFCATGSMGFKSNLS 144
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
SGEIVEQLVHAS S IRNVVFMGMGEPLNNY+ALVEA+ IM G PFQ+SPK+ITVSTVG
Sbjct: 145 SGEIVEQLVHASHFSQIRNVVFMGMGEPLNNYSALVEAIHIMQGSPFQLSPKKITVSTVG 204
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
I+HAINK SDLP LNLAVSLHAPVQD+RCQIMPAARAFPLEKLM+ L+ YQ NS QKIF
Sbjct: 205 IIHAINKLQSDLPNLNLAVSLHAPVQDIRCQIMPAARAFPLEKLMDTLRTYQTNSGQKIF 264
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
IEYIMLD VNDEEQHAHQLGKLLETFQVVVNLIPFNPIG++S F+TSS+ KV+ FQKILR
Sbjct: 265 IEYIMLDEVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGNLSYFKTSSEQKVARFQKILR 324
Query: 244 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDL 289
G+YNIRTTVRKQMGQDISGACGQLVVN PDK S S +TDIEDL
Sbjct: 325 GTYNIRTTVRKQMGQDISGACGQLVVNQPDKRSTGSAGLLTDIEDL 370
>gi|357480659|ref|XP_003610615.1| Ribosomal RNA large subunit methyltransferase N [Medicago
truncatula]
gi|355511950|gb|AES93573.1| Ribosomal RNA large subunit methyltransferase N [Medicago
truncatula]
Length = 380
Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust.
Identities = 233/288 (80%), Positives = 263/288 (91%), Gaps = 1/288 (0%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
QNG FVEAVIMRYD+ LGKY G+PRPGG R+TLCISSQVGCKMGC FCATG+MGFKSNLS
Sbjct: 94 QNGEFVEAVIMRYDTRLGKYGGEPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKSNLS 153
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
SGEIVEQLVHAS ++IRNVVFMGMGEPLNNY+A+VE+VRIM+G PFQ+S KRITVSTVG
Sbjct: 154 SGEIVEQLVHASAFAHIRNVVFMGMGEPLNNYSAVVESVRIMSGSPFQLSLKRITVSTVG 213
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
I+H+INK H+D+PGLNLAVSLHAP QD+RCQIMPAARAFPLEKLM +L+EYQ+ S QKI
Sbjct: 214 IIHSINKLHNDVPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMASLQEYQRKSLQKIL 273
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
IEYIMLDGVNDEEQHAH LGKLLETF+VVVNLIPFN IG++SQF+++S+ KVS FQKILR
Sbjct: 274 IEYIMLDGVNDEEQHAHLLGKLLETFEVVVNLIPFNSIGTLSQFKSTSEQKVSKFQKILR 333
Query: 244 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCI 291
G+YNIRTTVRKQMG+DISGACGQLVVNLPDK S + P+TDIEDL I
Sbjct: 334 GTYNIRTTVRKQMGEDISGACGQLVVNLPDK-SLGNANPLTDIEDLVI 380
>gi|356539162|ref|XP_003538069.1| PREDICTED: ribosomal RNA large subunit methyltransferase N 1-like
[Glycine max]
Length = 378
Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust.
Identities = 232/287 (80%), Positives = 260/287 (90%), Gaps = 1/287 (0%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G FVEAVIMRYD+ LGKY G+PRPGG R+TLCISSQVGCKMGCNFCATG+MGFK+NLSS
Sbjct: 93 HGPFVEAVIMRYDTRLGKYAGQPRPGGLRATLCISSQVGCKMGCNFCATGSMGFKNNLSS 152
Query: 65 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 124
GEIVEQLVHAS S IRNVVFMGMGEPLNNY+A+VEAVRIMTGLPFQ+S KRIT+STVGI
Sbjct: 153 GEIVEQLVHASTFSQIRNVVFMGMGEPLNNYSAVVEAVRIMTGLPFQLSSKRITISTVGI 212
Query: 125 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 184
+HAINK H DLPGLNLAVSLHAP QD+RCQIMPAARAFPL KLM++L+ YQ+ S QKIFI
Sbjct: 213 IHAINKLHDDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLGKLMDSLQVYQRKSLQKIFI 272
Query: 185 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 244
EYIMLDGVNDEE HAH LGKLLETFQVVVNLIPFN IG++SQF+ +S+ KVS+FQKILRG
Sbjct: 273 EYIMLDGVNDEEHHAHLLGKLLETFQVVVNLIPFNSIGTLSQFKPTSEQKVSNFQKILRG 332
Query: 245 SYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCI 291
+YNIRTTVRKQMGQDISGACGQL+VN+ DK S + P+TDIED+ I
Sbjct: 333 TYNIRTTVRKQMGQDISGACGQLLVNISDK-SLGTAVPLTDIEDIVI 378
>gi|357113533|ref|XP_003558557.1| PREDICTED: ribosomal RNA large subunit methyltransferase N 2-like
[Brachypodium distachyon]
Length = 382
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 227/288 (78%), Positives = 256/288 (88%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
QNG VEAV+MRYD+ LGKY+GKPRPGG RSTLC+SSQVGCKMGC FCATGTMGFKSNLS
Sbjct: 95 QNGESVEAVVMRYDTRLGKYDGKPRPGGVRSTLCVSSQVGCKMGCRFCATGTMGFKSNLS 154
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
SGEIVEQLVHASR S IRNVVFMGMGEPLNNY A+VEA+ ++TG PFQ+SPKRITVSTVG
Sbjct: 155 SGEIVEQLVHASRYSQIRNVVFMGMGEPLNNYTAVVEAIHVLTGPPFQLSPKRITVSTVG 214
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
I+H+INKF++DLP +NLAVSLHAP QD+RCQIMPAARAFPL KLMNAL+ YQ S+Q IF
Sbjct: 215 IIHSINKFNNDLPNINLAVSLHAPDQDIRCQIMPAARAFPLGKLMNALQSYQNESKQTIF 274
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
IEYIMLDGVND+EQHAHQLGKLLETF+ VVNLIPFNPIGS S F+TSSD V FQK+LR
Sbjct: 275 IEYIMLDGVNDQEQHAHQLGKLLETFKAVVNLIPFNPIGSSSNFKTSSDQSVKKFQKVLR 334
Query: 244 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCI 291
G Y+IRTTVR++MGQDI+GACGQLVV+LPD+ SA ++DIEDL I
Sbjct: 335 GVYSIRTTVRQEMGQDIAGACGQLVVSLPDERSAGGATLLSDIEDLRI 382
>gi|15230899|ref|NP_188597.1| radical SAM domain-containing protein [Arabidopsis thaliana]
gi|28393068|gb|AAO41968.1| unknown protein [Arabidopsis thaliana]
gi|28827394|gb|AAO50541.1| unknown protein [Arabidopsis thaliana]
gi|332642748|gb|AEE76269.1| radical SAM domain-containing protein [Arabidopsis thaliana]
Length = 372
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/288 (78%), Positives = 255/288 (88%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
QNG FVEAV+MRYD+ LG GKPRPGG RSTLCISSQVGCKMGC FCATGTMGFKSNL+
Sbjct: 85 QNGAFVEAVVMRYDTRLGMLGGKPRPGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLT 144
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
SGEIVEQLVHASR+++IRN+VFMGMGEPLNNY A+VEAVR+M PFQ+SPKRIT+STVG
Sbjct: 145 SGEIVEQLVHASRIADIRNIVFMGMGEPLNNYNAVVEAVRVMLNQPFQLSPKRITISTVG 204
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
IVHAINK H+DLPG++LAVSLHAPVQ++RCQIMPAARAFPL+KLM+AL+ +QKNSQQKIF
Sbjct: 205 IVHAINKLHNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNSQQKIF 264
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
IEYIMLDGVND+EQHAH LG+LL+TFQVV+NLIPFNPIGS SQF TSS VS FQKILR
Sbjct: 265 IEYIMLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQGVSRFQKILR 324
Query: 244 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCI 291
+Y IRTT+RK+MGQDISGACGQLVVN PD T + DIEDL +
Sbjct: 325 ETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKTPGTVELRDIEDLLL 372
>gi|388521505|gb|AFK48814.1| unknown [Lotus japonicus]
Length = 385
Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/291 (78%), Positives = 257/291 (88%), Gaps = 1/291 (0%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ NG FVEAVIMRYD+ LGKY GKPRPGG R+TLCISSQVGCKMGC FCATG+MGFK+
Sbjct: 96 IKLHNGAFVEAVIMRYDTRLGKYGGKPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKN 155
Query: 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVS 120
NLSSGEIVEQLVHAS + IRNVVFMGMGEPLNNY+A+V+AVRIMTG PFQ+S KRIT+S
Sbjct: 156 NLSSGEIVEQLVHASTFAQIRNVVFMGMGEPLNNYSAVVQAVRIMTGSPFQLSFKRITIS 215
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
TVGI+H+I + H+DLPGLNLAVSLHAP QD+RCQIMPAARAFPLEKLM++L+EYQ S
Sbjct: 216 TVGIIHSIKRLHNDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMDSLQEYQTKSLH 275
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
KI IEYIMLDGVNDEEQHA QLGKLL+TFQVVVNLIPFN IG +S+F+ SS+ KVS F+K
Sbjct: 276 KILIEYIMLDGVNDEEQHARQLGKLLQTFQVVVNLIPFNSIGILSEFKPSSEQKVSKFRK 335
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCI 291
ILRGSYNIRTTVRKQMG+ ISGACGQLVVNLPDK S + P+TDIEDL I
Sbjct: 336 ILRGSYNIRTTVRKQMGEGISGACGQLVVNLPDK-SLGNQDPLTDIEDLVI 385
>gi|242036573|ref|XP_002465681.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor]
gi|241919535|gb|EER92679.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor]
Length = 381
Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust.
Identities = 225/291 (77%), Positives = 256/291 (87%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ QNG VEAV+MRYD+ LGKY+GKPRPGG RSTLC+SSQVGCKMGC FCATGTMGFKS
Sbjct: 91 ISLQNGESVEAVVMRYDTRLGKYDGKPRPGGLRSTLCVSSQVGCKMGCRFCATGTMGFKS 150
Query: 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVS 120
NLSSGEI+EQLVHASR S IRNVVFMGMGEP+NNY ALVEA+ + TG PFQ+SPKRITVS
Sbjct: 151 NLSSGEIIEQLVHASRYSQIRNVVFMGMGEPMNNYNALVEAIGVFTGSPFQLSPKRITVS 210
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
TVGI+H INKF++DLP +NLAVSLHAP QD+RCQIMPAARAFPL KLMNAL+ YQ S+Q
Sbjct: 211 TVGIIHGINKFNADLPKVNLAVSLHAPDQDIRCQIMPAARAFPLVKLMNALQSYQNESKQ 270
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
IFIEYIMLDGVND+E+HAHQLGKLLETF+ VVNLIPFNPIGS+S F+TSSD V FQK
Sbjct: 271 TIFIEYIMLDGVNDQEEHAHQLGKLLETFKAVVNLIPFNPIGSLSNFKTSSDQNVKKFQK 330
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCI 291
+L+G Y+IRTTVR+QMGQDI+GACGQLVV+LPD+ SA ++DIEDL I
Sbjct: 331 VLKGIYHIRTTVRQQMGQDIAGACGQLVVSLPDERSAGGATLLSDIEDLRI 381
>gi|226498566|ref|NP_001144705.1| uncharacterized protein LOC100277741 [Zea mays]
gi|195646072|gb|ACG42504.1| hypothetical protein [Zea mays]
Length = 381
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/288 (78%), Positives = 253/288 (87%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
QNG VEAV+MRYD+ LGKY+GKPRPGG RSTLC+SSQVGCKMGC FCATGTMGFKSNLS
Sbjct: 94 QNGESVEAVVMRYDTRLGKYDGKPRPGGVRSTLCVSSQVGCKMGCRFCATGTMGFKSNLS 153
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
SGEIVEQLVHASR S IRNVVFMGMGEP+NNY ALVEA+ + TG PFQ+SPKRITVSTVG
Sbjct: 154 SGEIVEQLVHASRYSQIRNVVFMGMGEPMNNYNALVEAIGVFTGSPFQLSPKRITVSTVG 213
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
I+H INKF+ DLP +NLAVSLHAP QD+RCQIMPAARAFPL KLMNAL+ YQ S+Q IF
Sbjct: 214 IIHGINKFNGDLPKVNLAVSLHAPDQDIRCQIMPAARAFPLGKLMNALQSYQNESKQTIF 273
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
IEYIMLDGVND+E+HAHQLGKLLETF+ VVNLIPFNPIGS S F+TSSD V +FQK+L+
Sbjct: 274 IEYIMLDGVNDQEEHAHQLGKLLETFKAVVNLIPFNPIGSSSNFKTSSDQNVKNFQKVLK 333
Query: 244 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCI 291
G Y IRTT+R+QMGQDI+GACGQLVV+LPD+ SA ++DIEDL I
Sbjct: 334 GIYRIRTTIRQQMGQDIAGACGQLVVSLPDERSAGGATLLSDIEDLRI 381
>gi|414865368|tpg|DAA43925.1| TPA: hypothetical protein ZEAMMB73_090029 [Zea mays]
Length = 381
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/288 (78%), Positives = 253/288 (87%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
QNG VEAV+MRYD+ LGKY+GKPRPGG RSTLC+SSQVGCKMGC FCATGTMGFKSNLS
Sbjct: 94 QNGESVEAVVMRYDTRLGKYDGKPRPGGVRSTLCVSSQVGCKMGCRFCATGTMGFKSNLS 153
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
SGEIVEQLVHASR S IRNVVFMGMGEP+NNY ALVEA+ + TG PFQ+SPKRITVSTVG
Sbjct: 154 SGEIVEQLVHASRYSQIRNVVFMGMGEPMNNYNALVEAIGVFTGSPFQLSPKRITVSTVG 213
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
I+H INKF+ DLP +NLAVSLHAP QD+RCQIMPAARAFPL KLMNAL+ YQ S+Q IF
Sbjct: 214 IIHGINKFNGDLPKVNLAVSLHAPDQDIRCQIMPAARAFPLGKLMNALQSYQNESKQTIF 273
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
IEYIMLDGVND+E+HAHQLGKLLETF+ VVNLIPFNPIGS S F+TSSD V +FQK+L+
Sbjct: 274 IEYIMLDGVNDQEEHAHQLGKLLETFKAVVNLIPFNPIGSSSNFKTSSDQNVKNFQKVLK 333
Query: 244 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCI 291
G Y IRTT+R+QMGQDI+GACGQLVV+LPD+ SA ++DIEDL I
Sbjct: 334 GIYRIRTTIRQQMGQDIAGACGQLVVSLPDERSAGGATLLSDIEDLRI 381
>gi|115451403|ref|NP_001049302.1| Os03g0202300 [Oryza sativa Japonica Group]
gi|108706720|gb|ABF94515.1| radical SAM enzyme, Cfr family protein, expressed [Oryza sativa
Japonica Group]
gi|113547773|dbj|BAF11216.1| Os03g0202300 [Oryza sativa Japonica Group]
Length = 388
Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust.
Identities = 224/288 (77%), Positives = 254/288 (88%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+NG VEAVIMRYD+ LGKY+GKPRPGG RSTLC+SSQVGCKMGC FCATGTMGFKSNLS
Sbjct: 101 KNGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSSQVGCKMGCRFCATGTMGFKSNLS 160
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
SGEIVEQLVHASR S IRNVVFMGMGEPLNNY ALVEA++++ G PFQ+SPKRITVSTVG
Sbjct: 161 SGEIVEQLVHASRYSQIRNVVFMGMGEPLNNYTALVEAIQVLIGSPFQLSPKRITVSTVG 220
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
I+H+INKF++DLP +NLAVSLHAP QD+RC IMPAARAFPL KLMNAL+ YQ S+Q IF
Sbjct: 221 IIHSINKFNNDLPNINLAVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNESKQTIF 280
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
IEYIMLDGVND+EQHAHQLGKLLE F+ VVNLIPFNPIGS + F+TSS+ V FQKILR
Sbjct: 281 IEYIMLDGVNDQEQHAHQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILR 340
Query: 244 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCI 291
G YNIRTT+R+QMGQDI+GACGQLVV+LPD+ SA ++DIED+ I
Sbjct: 341 GIYNIRTTIRQQMGQDIAGACGQLVVSLPDERSAGGATLLSDIEDIRI 388
>gi|218192280|gb|EEC74707.1| hypothetical protein OsI_10424 [Oryza sativa Indica Group]
Length = 388
Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust.
Identities = 224/288 (77%), Positives = 254/288 (88%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+NG VEAVIMRYD+ LGKY+GKPRPGG RSTLC+SSQVGCKMGC FCATGTMGFKSNLS
Sbjct: 101 KNGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSSQVGCKMGCRFCATGTMGFKSNLS 160
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
SGEIVEQLVHASR S IRNVVFMGMGEPLNNY ALVEA++++ G PFQ+SPKRITVSTVG
Sbjct: 161 SGEIVEQLVHASRYSQIRNVVFMGMGEPLNNYTALVEAIQVLIGSPFQLSPKRITVSTVG 220
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
I+H+INKF++DLP +NLAVSLHAP QD+RC IMPAARAFPL KLMNAL+ YQ S+Q IF
Sbjct: 221 IIHSINKFNNDLPNINLAVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNESKQTIF 280
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
IEYIMLDGVND+EQHAHQLGKLLE F+ VVNLIPFNPIGS + F+TSS+ V FQKILR
Sbjct: 281 IEYIMLDGVNDQEQHAHQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILR 340
Query: 244 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCI 291
G YNIRTT+R+QMGQDI+GACGQLVV+LPD+ SA ++DIED+ I
Sbjct: 341 GIYNIRTTIRQQMGQDIAGACGQLVVSLPDERSAGGATLLSDIEDIRI 388
>gi|9294428|dbj|BAB02548.1| unnamed protein product [Arabidopsis thaliana]
Length = 382
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/298 (75%), Positives = 255/298 (85%), Gaps = 10/298 (3%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
QNG FVEAV+MRYD+ LG GKPRPGG RSTLCISSQVGCKMGC FCATGTMGFKSNL+
Sbjct: 85 QNGAFVEAVVMRYDTRLGMLGGKPRPGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLT 144
Query: 64 SGEIVEQLVHASRLSNIRNVVFM----------GMGEPLNNYAALVEAVRIMTGLPFQVS 113
SGEIVEQLVHASR+++IRN+VFM GMGEPLNNY A+VEAVR+M PFQ+S
Sbjct: 145 SGEIVEQLVHASRIADIRNIVFMLLPWFDDCDQGMGEPLNNYNAVVEAVRVMLNQPFQLS 204
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
PKRIT+STVGIVHAINK H+DLPG++LAVSLHAPVQ++RCQIMPAARAFPL+KLM+AL+
Sbjct: 205 PKRITISTVGIVHAINKLHNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQT 264
Query: 174 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDD 233
+QKNSQQKIFIEYIMLDGVND+EQHAH LG+LL+TFQVV+NLIPFNPIGS SQF TSS
Sbjct: 265 FQKNSQQKIFIEYIMLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQ 324
Query: 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCI 291
VS FQKILR +Y IRTT+RK+MGQDISGACGQLVVN PD T + DIEDL +
Sbjct: 325 GVSRFQKILRETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKTPGTVELRDIEDLLL 382
>gi|297834876|ref|XP_002885320.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp.
lyrata]
gi|297331160|gb|EFH61579.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp.
lyrata]
Length = 382
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/296 (76%), Positives = 254/296 (85%), Gaps = 10/296 (3%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
QNG FVEAV+MRYD+ LG GKPRPGG RSTLCISSQVGCKMGC FCATGTMGFKSNL+
Sbjct: 85 QNGAFVEAVVMRYDTRLGMLGGKPRPGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLT 144
Query: 64 SGEIVEQLVHASRLSNIRNVVFM----------GMGEPLNNYAALVEAVRIMTGLPFQVS 113
SGEIVEQLVHASR+++IRN+VFM GMGEPLNNY A+VEAVR+M PFQ+S
Sbjct: 145 SGEIVEQLVHASRIADIRNIVFMLLPWFDDCDQGMGEPLNNYNAVVEAVRVMLKQPFQLS 204
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
PKRIT+STVGIVHAINK +DLPG++LAVSLHAPVQ++RCQIMPAARAFPL+KLM+AL+
Sbjct: 205 PKRITISTVGIVHAINKLDNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQT 264
Query: 174 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDD 233
+QKNSQQKIFIEYIMLDGVND+EQHAH LG+LL+TFQVV+NLIPFNPIGS SQF TSS
Sbjct: 265 FQKNSQQKIFIEYIMLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQ 324
Query: 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDL 289
VSSFQKILR +Y IRTT+RK+MGQDISGACGQLVVN PD T + DIEDL
Sbjct: 325 SVSSFQKILRETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKTPGTVELRDIEDL 380
>gi|294461088|gb|ADE76111.1| unknown [Picea sitchensis]
Length = 384
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/294 (71%), Positives = 246/294 (83%), Gaps = 6/294 (2%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
QNG F+E VIM YD+ LG Y G PRPGGPR+TLC+SSQVGCKMGC FCATG+MGFKSNLS
Sbjct: 88 QNGSFIETVIMSYDTRLGTYAGSPRPGGPRATLCVSSQVGCKMGCTFCATGSMGFKSNLS 147
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
GEIVEQLVHA+R+S IRNVVFMGMGEPLNNY ++VEAVR M G FQ++P+ IT+S VG
Sbjct: 148 VGEIVEQLVHAARISQIRNVVFMGMGEPLNNYKSVVEAVRSMIGHCFQLAPRHITISAVG 207
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
++H IN DLP +NLAVSLHAP+Q++RCQIMPAARAFPL KLM+AL YQ++S++KIF
Sbjct: 208 VIHCINNLKYDLPNVNLAVSLHAPLQEIRCQIMPAARAFPLGKLMDALHAYQEHSKRKIF 267
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
IEYIMLDG+ND+EQ AH LGKLLE ++VVVNLI FNPIGS+S++RTS + V FQKILR
Sbjct: 268 IEYIMLDGINDQEQQAHLLGKLLEEYEVVVNLISFNPIGSISKYRTSKKENVELFQKILR 327
Query: 244 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS-AK---STPP--VTDIEDLCI 291
G YNIRTTVR++MGQDISGACGQLVVNL DK S AK S P + DIEDL I
Sbjct: 328 GVYNIRTTVRQEMGQDISGACGQLVVNLSDKKSPAKMEYSGKPEGIPDIEDLSI 381
>gi|222624395|gb|EEE58527.1| hypothetical protein OsJ_09817 [Oryza sativa Japonica Group]
Length = 356
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 204/255 (80%), Positives = 228/255 (89%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+NG VEAVIMRYD+ LGKY+GKPRPGG RSTLC+SSQVGCKMGC FCATGTMGFKSNLS
Sbjct: 101 KNGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSSQVGCKMGCRFCATGTMGFKSNLS 160
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
SGEIVEQLVHASR S IRNVVFMGMGEPLNNY ALVEA++++ G PFQ+SPKRITVSTVG
Sbjct: 161 SGEIVEQLVHASRYSQIRNVVFMGMGEPLNNYTALVEAIQVLIGSPFQLSPKRITVSTVG 220
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
I+H+INKF++DLP +NLAVSLHAP QD+RC IMPAARAFPL KLMNAL+ YQ S+Q IF
Sbjct: 221 IIHSINKFNNDLPNINLAVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNESKQTIF 280
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
IEYIMLDGVND+EQHAHQLGKLLE F+ VVNLIPFNPIGS + F+TSS+ V FQKILR
Sbjct: 281 IEYIMLDGVNDQEQHAHQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILR 340
Query: 244 GSYNIRTTVRKQMGQ 258
G YNIRTT+R+QMGQ
Sbjct: 341 GIYNIRTTIRQQMGQ 355
>gi|255632735|gb|ACU16719.1| unknown [Glycine max]
Length = 245
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/246 (80%), Positives = 222/246 (90%), Gaps = 1/246 (0%)
Query: 46 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM 105
MGCNFCATG+MGFK+NLSSGEIVEQLVHAS S IRNVVFMGMGEPLNNY+A+VEAVRIM
Sbjct: 1 MGCNFCATGSMGFKNNLSSGEIVEQLVHASTFSQIRNVVFMGMGEPLNNYSAVVEAVRIM 60
Query: 106 TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 165
TGLPFQ+S KRIT+STVGI+HAINK H DLPGLNLAVSLHAP QD+RCQIMPAARAFPL
Sbjct: 61 TGLPFQLSSKRITISTVGIIHAINKLHDDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLG 120
Query: 166 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS 225
KLM++L+ YQ+ S QKIFIEYIMLDGVNDEE HAH LGKLLETFQVVVNLIPFN IG++S
Sbjct: 121 KLMDSLQVYQRKSLQKIFIEYIMLDGVNDEEHHAHLLGKLLETFQVVVNLIPFNSIGTLS 180
Query: 226 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTD 285
QF+ +S+ KVS+FQKILRG+YNIRTTVRKQMG+DISGACGQL+VN+ DK + P+TD
Sbjct: 181 QFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGRDISGACGQLLVNISDK-PLGTAVPLTD 239
Query: 286 IEDLCI 291
IED+ I
Sbjct: 240 IEDIVI 245
>gi|356495821|ref|XP_003516770.1| PREDICTED: LOW QUALITY PROTEIN: ribosomal RNA large subunit
methyltransferase N-like [Glycine max]
Length = 316
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/276 (72%), Positives = 227/276 (82%), Gaps = 21/276 (7%)
Query: 27 PRPGGPRS-----------TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS 75
P P P+S TLCISSQ+GCKMGCNFCATG+MGFK+NLSSGEIVEQLVH
Sbjct: 51 PHPAPPQSWTFRRRHSFGATLCISSQLGCKMGCNFCATGSMGFKNNLSSGEIVEQLVHX- 109
Query: 76 RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL 135
IRNVVFMGMGEPLNNY+A+VEAVRIM +S KRIT+STVGI+HAINK H+DL
Sbjct: 110 ---QIRNVVFMGMGEPLNNYSAVVEAVRIMX-----LSSKRITISTVGIIHAINKLHNDL 161
Query: 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDE 195
GLNLAVSLHAP QD+RCQIMPAARAFPL KLM++L++YQ S QKIFIEYIMLDGVNDE
Sbjct: 162 SGLNLAVSLHAPAQDIRCQIMPAARAFPLGKLMDSLQDYQSKSLQKIFIEYIMLDGVNDE 221
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
E HAHQLGKL TFQVVVNL+PFN IG++SQF+ +S+ VS+F KIL G+Y+IRTTVRKQ
Sbjct: 222 EHHAHQLGKLSRTFQVVVNLMPFNSIGTLSQFKPTSEQNVSNFHKILWGTYHIRTTVRKQ 281
Query: 256 MGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCI 291
MGQDISGACGQLVVN+PDK S + P+TDIEDL I
Sbjct: 282 MGQDISGACGQLVVNIPDK-SLGNAVPLTDIEDLVI 316
>gi|255573175|ref|XP_002527517.1| catalytic, putative [Ricinus communis]
gi|223533157|gb|EEF34915.1| catalytic, putative [Ricinus communis]
Length = 337
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/208 (85%), Positives = 193/208 (92%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
QNG FVEAVIMRYD+ LG Y GKPRPGGPRSTLCISSQVGCKMGC FCATG+MGFK+NLS
Sbjct: 127 QNGAFVEAVIMRYDTRLGNYGGKPRPGGPRSTLCISSQVGCKMGCKFCATGSMGFKNNLS 186
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
SGEIVEQLVHA++LS IRNVVFMGMGEPLNNY ALVEA+R+M G PFQ+SPK+ITVSTVG
Sbjct: 187 SGEIVEQLVHATQLSQIRNVVFMGMGEPLNNYTALVEAIRVMLGSPFQLSPKKITVSTVG 246
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
++HAINK DLPGLNLAVSLHAPVQD+RC IMPAARAFPLEKLM+AL+ YQKNSQQKIF
Sbjct: 247 VIHAINKLQRDLPGLNLAVSLHAPVQDIRCHIMPAARAFPLEKLMDALQVYQKNSQQKIF 306
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQV 211
IEYIMLDGVNDEEQHAHQLGKLLE F+V
Sbjct: 307 IEYIMLDGVNDEEQHAHQLGKLLEAFEV 334
>gi|168043878|ref|XP_001774410.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674262|gb|EDQ60773.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 372
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/287 (59%), Positives = 226/287 (78%), Gaps = 5/287 (1%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
Q G VEAVIMR+D+ GKY G PR GG R+TLC+SSQVGC+MGC FCATGTMG K NLS
Sbjct: 89 QGGQSVEAVIMRHDAGAGKYAGGPRQGGSRATLCVSSQVGCQMGCTFCATGTMGLKGNLS 148
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
+GEIVEQLVHAS+++ IRN+VFMGMGEPLNNY ++VE ++IMTG F +SP ITVSTVG
Sbjct: 149 AGEIVEQLVHASQVTPIRNIVFMGMGEPLNNYKSVVEGIQIMTGRCFGLSPSHITVSTVG 208
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
++ I +DLPG+NLA+SLHAP Q++RCQI+P A+A+PL KLM AL YQ S++++
Sbjct: 209 VIPRILSIANDLPGVNLALSLHAPTQELRCQIVPTAKAYPLHKLMAALNSYQTISRRRVL 268
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
+EY+ML G+ND ++ AHQLG LL+ V +NLIP+NP S S ++ +S + ++ FQKILR
Sbjct: 269 VEYVMLAGINDSDEVAHQLGTLLKDHNVTLNLIPYNPATS-SDYKPTSQEDLTRFQKILR 327
Query: 244 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLC 290
G + +RTT+R++MGQDI+GACGQLV++ S K +P +TDIED+C
Sbjct: 328 GVHGVRTTIRQEMGQDIAGACGQLVISQ----SVKQSPKLTDIEDMC 370
>gi|302807670|ref|XP_002985529.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii]
gi|300146735|gb|EFJ13403.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii]
Length = 374
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 169/286 (59%), Positives = 212/286 (74%), Gaps = 5/286 (1%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ Q+G VE VIMR+ GKY G PRPG R+TLC+SSQVGCKMGC+FCATGTMGF +
Sbjct: 82 LQLQSGQSVETVIMRHHGGAGKYAGGPRPGSDRATLCVSSQVGCKMGCSFCATGTMGFVA 141
Query: 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVS 120
NL++GEIVEQ VHASR+S IRN+VFMGMGEPLNNY ++V+AV+ +TG F +SP RIT+S
Sbjct: 142 NLTAGEIVEQYVHASRMSPIRNIVFMGMGEPLNNYNSVVQAVQTLTGRCFGLSPSRITIS 201
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
TVGIV I DLPG+NLA+SLHAP Q +RCQI+PA+RAF L+KLM A+ YQ +S +
Sbjct: 202 TVGIVPRILSLAGDLPGVNLALSLHAPTQALRCQIVPASRAFTLDKLMAAVDAYQASSNR 261
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
+FIEY+ML VND Q A QLG LL +VV+NLIP+N V +R + D+V FQK
Sbjct: 262 TLFIEYVMLQDVNDSSQDARQLGCLLRDRKVVLNLIPYNHTFVVGDYRATPADRVHHFQK 321
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDI 286
I+R + IRTTVR++MGQDI GACGQL + K++P + DI
Sbjct: 322 IVREEFGIRTTVRQEMGQDIDGACGQLALK-----KLKASPDMEDI 362
>gi|302810701|ref|XP_002987041.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii]
gi|300145206|gb|EFJ11884.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii]
Length = 374
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 168/286 (58%), Positives = 212/286 (74%), Gaps = 5/286 (1%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ Q+G VE VIMR+ GKY G PRPG R+TLC+SSQVGCKMGC+FCATGTMGF +
Sbjct: 82 LQLQSGQSVETVIMRHHGGAGKYAGGPRPGSDRATLCVSSQVGCKMGCSFCATGTMGFVA 141
Query: 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVS 120
NL++GEIVEQ VHASR+S IRN+VFMGMGEPLNNY ++V+AV+ +TG F +SP RIT+S
Sbjct: 142 NLTAGEIVEQYVHASRMSPIRNIVFMGMGEPLNNYNSVVQAVQTLTGRCFGLSPSRITIS 201
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
TVGIV I DLPG+NLA+SLHAP Q +RCQI+PA+RAF L+KLM A+ YQ +S +
Sbjct: 202 TVGIVPRILSVAGDLPGVNLALSLHAPTQALRCQIVPASRAFTLDKLMAAVDAYQASSNR 261
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
+FIEY+ML VND Q A QLG LL +VV+NLIP+N V +R + D+V FQK
Sbjct: 262 TLFIEYVMLQDVNDSSQDARQLGCLLRDRKVVLNLIPYNHTFVVGDYRATPADRVHHFQK 321
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDI 286
I+R + IRTTVR++MGQDI GACGQL + +++P + DI
Sbjct: 322 IVREEFGIRTTVRQEMGQDIDGACGQLALK-----KLEASPDMEDI 362
>gi|159463592|ref|XP_001690026.1| predicted protein [Chlamydomonas reinhardtii]
gi|158284014|gb|EDP09764.1| predicted protein [Chlamydomonas reinhardtii]
Length = 374
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/272 (54%), Positives = 194/272 (71%), Gaps = 7/272 (2%)
Query: 1 MDCQNGGFVEAVIMRYD----SSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 56
++ Q+G VEAV+M YD ++ G RSTLC+SSQVGC+MGC FCATGTM
Sbjct: 88 VELQDGMQVEAVVMTYDAPSVTAAGAAAAAAARARKRSTLCVSSQVGCQMGCTFCATGTM 147
Query: 57 GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPK 115
G K +L++GEIVEQLVHA ++ IRNVVFMGMGEPLNNY A+ AV +MT F + +
Sbjct: 148 GLKGHLNAGEIVEQLVHARAVARIRNVVFMGMGEPLNNYEAVRGAVAMMTDSKYFGLRRR 207
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
+TVSTVG++ I + DLPG++LA+SLHAP Q++R QI+P+ARA+ L+KLM A++ YQ
Sbjct: 208 HVTVSTVGVIPRIKQLAEDLPGVSLALSLHAPTQELRLQIVPSARAYKLDKLMEAVRSYQ 267
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ--FRTSSDD 233
NS Q++F EY+ML GVND E+ AHQLG+LL+ VV+NLIP+NPI F D
Sbjct: 268 ANSSQRVFYEYVMLSGVNDGEEQAHQLGQLLKGDDVVINLIPWNPIYQPEGPFFEAPRDG 327
Query: 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACG 265
V +FQ ILR Y + TT+R++MGQDISGA G
Sbjct: 328 SVGTFQSILRHQYGLHTTIRQEMGQDISGAWG 359
>gi|384252800|gb|EIE26275.1| hypothetical protein COCSUDRAFT_26936 [Coccomyxa subellipsoidea
C-169]
Length = 394
Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 152/295 (51%), Positives = 204/295 (69%), Gaps = 6/295 (2%)
Query: 4 QNGGFVEAVIMRYDSSLG---KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
Q+G VEAV+M YD G +G G RSTLC+SSQVGC+MGC FCATGTMG K
Sbjct: 91 QDGMQVEAVVMTYDKEGGDGESEDGHAVLGQQRSTLCVSSQVGCQMGCTFCATGTMGLKG 150
Query: 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 119
+L++GEIVEQL+HA R++ I+N+VFMGMGEPLNNY A+ AV +M F + ++T+
Sbjct: 151 DLTAGEIVEQLLHAQRVTRIKNIVFMGMGEPLNNYEAVRSAVALMIDPSLFSLRRSKVTI 210
Query: 120 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 179
STVGIV I + DLPG++LA+SLHAP Q +R I+P+ARA+ L+KLM A+ Y++ +
Sbjct: 211 STVGIVPRILQLVEDLPGVSLALSLHAPNQVLRQSIVPSARAYKLDKLMAAIDTYREKTG 270
Query: 180 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS-QFRTSSDDKVSSF 238
QKIF+EY+ML+ VND + AH+LG+LL +++NLIP+NPI S F +V++F
Sbjct: 271 QKIFVEYVMLNQVNDAPETAHELGQLLRGKNMILNLIPWNPIYSPDMHFEAPGGTRVAAF 330
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK-ISAKSTPPVTDIEDLCIR 292
Q+I+R Y + TVR++MGQDISGACGQLVV +S DIE+L R
Sbjct: 331 QRIVREDYGVFCTVRQEMGQDISGACGQLVVEQGGAGCGGQSAGKAADIEELGKR 385
>gi|326434869|gb|EGD80439.1| radical SAM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 517
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 141/309 (45%), Positives = 200/309 (64%), Gaps = 24/309 (7%)
Query: 4 QNGGFVEAVIMRY----------DSSLGKYNGKPR-PGGPRSTLCISSQVGCKMGCNFCA 52
Q+G VE VIMRY D +G+ R+T+C+SSQVGCKMGC FCA
Sbjct: 93 QDGALVETVIMRYGRVELRNFPSDRQRRTEDGETVFASKERATVCVSSQVGCKMGCTFCA 152
Query: 53 TGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 111
TGTMG SNL++GEI+EQL HA+ + IRNVVFMGMGEPL+NY A+V AVR MT + F
Sbjct: 153 TGTMGLLSNLTAGEILEQLYHANTVEKIRNVVFMGMGEPLDNYDAVVMAVRGMTDVQRFS 212
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+SP RI VSTVG+V + K D+P + LA+SLHAP Q++R QI+P A+A+ ++++M A+
Sbjct: 213 LSPSRIAVSTVGVVPKMLKMAEDIPQVGLALSLHAPTQELRAQIVPTAKAWHIDRIMAAM 272
Query: 172 KEYQKNSQQ------KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS 225
+ ++ Q + IEY+++D VN E+ AHQLG+LLE +V++N+IP+NP
Sbjct: 273 DNFIEHRSQVASRKSHVLIEYVLIDNVNSSEEVAHQLGRLLEGREVILNVIPYNPTDVPH 332
Query: 226 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV-----NLPDKISAKST 280
++ S + + F +LR Y++RT VR+++GQD++ ACGQLV+ N +
Sbjct: 333 DYKAPSSETLEKFNAVLR-EYDLRTIVRQELGQDVNAACGQLVISSQRNNGATAGTGGGA 391
Query: 281 PPVTDIEDL 289
TDIED+
Sbjct: 392 CQPTDIEDM 400
>gi|325192828|emb|CCA27229.1| hypothetical protein SELMODRAFT_122498 [Albugo laibachii Nc14]
Length = 424
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/288 (47%), Positives = 194/288 (67%), Gaps = 17/288 (5%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
Q+G VE+VIM++ R+ LC+SSQVGC+MGC FCATGTMG ++L
Sbjct: 91 QDGHGVESVIMKHKG--------------RNMLCVSSQVGCQMGCTFCATGTMGIIADLC 136
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
SGEI+EQL A+ + IRNVVFMGMGEPL NY ++ A++ MT + F ++PK +T+STVG
Sbjct: 137 SGEILEQLAFANTFARIRNVVFMGMGEPLQNYDEVIAAIKAMTSV-FGLAPKHVTLSTVG 195
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-I 182
++H I + + D+P + LA+SLHAP Q++R QI+P+++AFPLEKLM A+ ++ + + + +
Sbjct: 196 VIHRIQQLNRDVPLVRLALSLHAPTQELRSQIVPSSKAFPLEKLMQAIDDHLASREHRVV 255
Query: 183 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 242
IEY ML G+ND + AH LGKLL+ V +NLIP+N +QF + SD + +FQ IL
Sbjct: 256 LIEYCMLKGINDSIETAHLLGKLLQDRSVHINLIPYNTTDVDAQFSSPSDQDIRNFQSIL 315
Query: 243 RGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT-DIEDL 289
R YN++ TVR+ G DI GACGQL + + + S + DIEDL
Sbjct: 316 RQDYNLKATVRENHGMDIEGACGQLALKTTSQHATPSKNDIARDIEDL 363
>gi|328773686|gb|EGF83723.1| hypothetical protein BATDEDRAFT_3639, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 368
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/280 (46%), Positives = 189/280 (67%), Gaps = 11/280 (3%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPR-PGGPRSTLCISSQVGCKMGCNFCATGTMGFK 59
++ Q+G +E+VIMRY+ +G + R+TLC+SSQVGC MGC FCATGTMG
Sbjct: 79 VELQDGQRIESVIMRYEKMTKDMDGNIKYRSNKRATLCVSSQVGCAMGCTFCATGTMGLL 138
Query: 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRIT 118
+NLS+GEI+EQLVHA+++ +IRNVVFMGMGEPL+NY A++ AV M F +SP RI+
Sbjct: 139 ANLSAGEILEQLVHANQVEHIRNVVFMGMGEPLDNYPAVLMAVNGMIDTSRFGLSPSRIS 198
Query: 119 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY---- 174
VSTVG+V + D+P + LA+SLHAP Q++R QI+P A+A+ +E++M A +
Sbjct: 199 VSTVGVVPRMRSLVRDMPDIGLALSLHAPTQELRTQIVPTAKAWNIERIMEAADVFIAQQ 258
Query: 175 -----QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 229
N ++ + IEY+++ +ND E AHQLGKLLE V++N+IP+NP ++
Sbjct: 259 NANVKSHNRRKHVLIEYVLIADINDSEVVAHQLGKLLEGRDVLLNVIPYNPTSVPYDYKP 318
Query: 230 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
+ + F I+R YN+ T +R+++GQDIS ACGQLV+
Sbjct: 319 PLQETMKVFVDIVRRVYNVHTLLRQELGQDISSACGQLVI 358
>gi|255640205|gb|ACU20393.1| unknown [Glycine max]
Length = 271
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/153 (81%), Positives = 136/153 (88%), Gaps = 4/153 (2%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G FVEAVIMRYD+ LGKY G+PRPGG R+TLCISSQVGCKMGCNFCATG+MGFK+NLSS
Sbjct: 93 HGPFVEAVIMRYDTRLGKYAGQPRPGGLRATLCISSQVGCKMGCNFCATGSMGFKNNLSS 152
Query: 65 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 124
GEIVEQLVHAS S IRNVVFMGMGEPLNNY+A+VEAVRIMTGLPFQ+S KRIT+STVGI
Sbjct: 153 GEIVEQLVHASTFSQIRNVVFMGMGEPLNNYSAVVEAVRIMTGLPFQLSSKRITISTVGI 212
Query: 125 VHAINKFHSDLPGLNLAVSLHA----PVQDVRC 153
+HAINK H DLPGLNLAVSLHA P+ D C
Sbjct: 213 IHAINKLHDDLPGLNLAVSLHARPRHPLPDNAC 245
>gi|307103703|gb|EFN51961.1| hypothetical protein CHLNCDRAFT_27272 [Chlorella variabilis]
Length = 384
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/272 (48%), Positives = 184/272 (67%), Gaps = 23/272 (8%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNG--KPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSN 61
Q+G VEAV+M+YD++ G +G GG R+TLC+SS+VGC MGC FCATGTMG ++
Sbjct: 91 QDGLQVEAVVMQYDNTGGWVDGWVAAMEGGKRTTLCVSSEVGCAMGCTFCATGTMGLSAD 150
Query: 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVS 120
L++GEIVEQLVHAS +S I+N+VFMGMGEPLNNY A+ AVR+MT F + +++TVS
Sbjct: 151 LTAGEIVEQLVHASSVSRIQNIVFMGMGEPLNNYEAVRTAVRLMTDPSSFALRRRKVTVS 210
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
TVG++ + + D+PG++LA+SLHAP Q++R I Y + + Q
Sbjct: 211 TVGVIPRMLQMADDMPGVSLALSLHAPTQELRQTI------------------YLERTGQ 252
Query: 181 KIFIEYIMLD-GVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS-QFRTSSDDKVSSF 238
++F+EY+ML +N + HAHQLG+LL+ V+VNLIP+NPI S S F + ++F
Sbjct: 253 RVFVEYVMLGPDINCTQAHAHQLGRLLQGRNVLVNLIPWNPILSPSITFAAPEEGATAAF 312
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
ILR Y + T+R + GQDISGACGQLV+
Sbjct: 313 HSILRYQYGVNCTIRAEKGQDISGACGQLVLE 344
>gi|167526355|ref|XP_001747511.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773957|gb|EDQ87591.1| predicted protein [Monosiga brevicollis MX1]
Length = 1527
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 138/317 (43%), Positives = 204/317 (64%), Gaps = 30/317 (9%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRP---------------GGPRSTLCISSQVGCK 45
++ Q+G +E VIMRY G++ + P R+T+C+SSQVGC+
Sbjct: 657 IELQDGAQIETVIMRY----GRFELRNFPEDAQKKSSDGEVSFVSKERATVCVSSQVGCQ 712
Query: 46 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM 105
MGC FCATGTMG SNL++GEI+EQL HA+++ IRNVVFMGMGEPL+NY A+ AV M
Sbjct: 713 MGCTFCATGTMGLMSNLAAGEILEQLYHANQVEKIRNVVFMGMGEPLDNYDAVRFAVSAM 772
Query: 106 TGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 164
T + F + +I+VSTVG+V I++ D+P + LA+SLHAP Q++R +I+P+ R++ L
Sbjct: 773 TDVRRFSLGASKISVSTVGVVPRIHQMVEDMPDVGLALSLHAPNQELREEIVPSGRSWHL 832
Query: 165 EKLMNALKEYQKNSQQ-------KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 217
+++M A+ +Q+ Q+ I IEY+++D VN E+ AHQLG LL+ V+VN+IP
Sbjct: 833 DRIMEAIDHFQETRQETSRRRRTHILIEYVLIDEVNSTEEVAHQLGHLLKDRDVLVNVIP 892
Query: 218 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV--NLPDKI 275
+NP ++ S F +I+R SY +RT +R+++GQD++ ACGQLVV +
Sbjct: 893 YNPTDVPHDYKPPSRATTDRFNEIVR-SYGLRTIIRQELGQDVNAACGQLVVRSQRAKEA 951
Query: 276 SAKSTPPVTDIEDLCIR 292
+A + P V D+EDL R
Sbjct: 952 NAAAAPAVGDLEDLMSR 968
>gi|424513724|emb|CCO66346.1| radical SAM enzyme, Cfr family [Bathycoccus prasinos]
Length = 579
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 129/279 (46%), Positives = 188/279 (67%), Gaps = 14/279 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPG--GPRSTLCISSQVGCKMGCNFCATGTMGF 58
++ Q+G VEAVI+R+ G+ G G +TLCISSQVGCKMGC FCATGTMG
Sbjct: 194 VELQDGHRVEAVIIRH------LKGRRAEGKKGLGATLCISSQVGCKMGCTFCATGTMGE 247
Query: 59 KSNLSSGEIVEQLVHASRLS-NIRNVVFMGMGEPLNNYAALVEAVRIMTG----LPFQVS 113
NL++GEIVEQ+ HA R+ +RN+VFMGMGEPLNNY A+V+A+R M+ + F +
Sbjct: 248 LGNLTTGEIVEQVAHARRIEPRVRNIVFMGMGEPLNNYDAVVDAIRCMSQSENQMGFNIP 307
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
+I VSTVG++ I +F D P +++A+SLHAP Q++R +I+P A A+PL++LM L +
Sbjct: 308 CPKICVSTVGVIPNIYRFSEDCPTVSMALSLHAPTQEIRKKIVPMATAYPLDELMRCLDD 367
Query: 174 Y-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 232
Y K+ + + +EY +L G+ND ++ A LG+LL +VV+N IP+NP ++
Sbjct: 368 YLAKSEKNSMLVEYCVLKGINDTKECARLLGELLGGKKVVLNFIPYNPTDVIAGHERPEM 427
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 271
+ + + ILR Y + TTVR++MG DI+GACGQL +++
Sbjct: 428 EDIQAMNTILREEYGMTTTVRQEMGSDIAGACGQLAISV 466
>gi|145344512|ref|XP_001416775.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577001|gb|ABO95068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 298
Score = 253 bits (645), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 133/271 (49%), Positives = 173/271 (63%), Gaps = 16/271 (5%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G VEA +MR+ R+TLC+SSQVGCKMGC FCATGT+G NLS+G
Sbjct: 41 GDVVEACVMRHAKG-------------RTTLCVSSQVGCKMGCTFCATGTLGELGNLSAG 87
Query: 66 EIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGI 124
EI EQL HASR +RNVVFMGMGEPLNNY +++A+ MT F +SP +ITVSTVG+
Sbjct: 88 EICEQLAHASRGDAVRNVVFMGMGEPLNNYRNVIDAIEAMTSDKGFGLSPAKITVSTVGV 147
Query: 125 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIF 183
+ + D PG LA+SLHAP Q +R +I+P A A+ LE LM L E+ + + K
Sbjct: 148 IPRMRTLRRDAPGTRLALSLHAPNQALRQKIVPTATAYKLEDLMATLDEHMASGPKMKTM 207
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
IEY +L GVND+E A +LG LL +V+VNLIP NP + + + + V +IL
Sbjct: 208 IEYCVLGGVNDDEACARELGALLRGKEVIVNLIPLNPTDTPAGHVPPTREAVQKMLEILT 267
Query: 244 G-SYNIRTTVRKQMGQDISGACGQLVVNLPD 273
+++ TTVR +MGQDI+GACGQL + PD
Sbjct: 268 SPEFDLFTTVRHEMGQDIAGACGQLALKTPD 298
>gi|237840861|ref|XP_002369728.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
gi|211967392|gb|EEB02588.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
Length = 619
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 123/252 (48%), Positives = 167/252 (66%), Gaps = 17/252 (6%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL 92
R+T+C+S+QVGC+MGC FCATGTMG K NL+ EI+EQL HASR+ IRN+VFMGMGEPL
Sbjct: 214 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRVETIRNIVFMGMGEPL 273
Query: 93 NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 151
+NY ++V ++R MT F + R+ +STVG+ H I + SDLP LA+SLHAP Q
Sbjct: 274 DNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLASDLPACRLALSLHAPDQPT 333
Query: 152 RCQIMP-AARAFPLEKLMNALKEYQKNSQQK-----------IFIEYIMLDGVNDEEQHA 199
R ++MP AA + LE+++ A E+ K QQK + +EYIM+ VND + A
Sbjct: 334 RLKLMPRAAAGWKLERVLEATDEFVK--QQKRLNSTGMKNIGLLVEYIMIQDVNDTLEQA 391
Query: 200 HQLGKLLE--TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
H LG++L+ V+VNLIP+NP ++ S+ ++V F ILR Y I+ VR+ +G
Sbjct: 392 HALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFLTILRKEYAIKVLVRQTLG 451
Query: 258 QDISGACGQLVV 269
QDI ACGQLVV
Sbjct: 452 QDIDSACGQLVV 463
>gi|221503269|gb|EEE28967.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
VEG]
Length = 619
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/252 (48%), Positives = 167/252 (66%), Gaps = 17/252 (6%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL 92
R+T+C+S+QVGC+MGC FCATGTMG K NL+ EI+EQL HASR+ IRN+VFMGMGEPL
Sbjct: 214 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRVETIRNIVFMGMGEPL 273
Query: 93 NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 151
+NY ++V ++R MT F + R+ +STVG+ H I + SDLP LA+SLHAP Q
Sbjct: 274 DNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLASDLPACRLALSLHAPDQPT 333
Query: 152 RCQIMP-AARAFPLEKLMNALKEYQKNSQQK-----------IFIEYIMLDGVNDEEQHA 199
R ++MP AA + LE+++ A E+ K QQK + +EYIM+ VND + A
Sbjct: 334 RLKLMPRAAAGWKLERVLEATDEFVK--QQKRLNSTGMKNIGLLVEYIMIQDVNDTLEQA 391
Query: 200 HQLGKLLE--TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
H LG++L+ V+VNLIP+NP ++ S+ ++V F ILR Y I+ VR+ +G
Sbjct: 392 HALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFLTILRKEYAIKVLVRQTLG 451
Query: 258 QDISGACGQLVV 269
QDI ACGQLVV
Sbjct: 452 QDIDSACGQLVV 463
>gi|95007443|emb|CAJ20664.1| hypothetical protein, conserved [Toxoplasma gondii RH]
Length = 641
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/252 (48%), Positives = 167/252 (66%), Gaps = 17/252 (6%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL 92
R+T+C+S+QVGC+MGC FCATGTMG K NL+ EI+EQL HASR+ IRN+VFMGMGEPL
Sbjct: 236 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRVETIRNIVFMGMGEPL 295
Query: 93 NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 151
+NY ++V ++R MT F + R+ +STVG+ H I + SDLP LA+SLHAP Q
Sbjct: 296 DNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLASDLPACRLALSLHAPDQPT 355
Query: 152 RCQIMP-AARAFPLEKLMNALKEYQKNSQQK-----------IFIEYIMLDGVNDEEQHA 199
R ++MP AA + LE+++ A E+ K QQK + +EYIM+ VND + A
Sbjct: 356 RLKLMPRAAAGWKLERVLEATDEFVK--QQKRLNSTGMKNIGLLVEYIMIQDVNDTLEQA 413
Query: 200 HQLGKLLE--TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
H LG++L+ V+VNLIP+NP ++ S+ ++V F ILR Y I+ VR+ +G
Sbjct: 414 HALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFLTILRKEYAIKVLVRQTLG 473
Query: 258 QDISGACGQLVV 269
QDI ACGQLVV
Sbjct: 474 QDIDSACGQLVV 485
>gi|221482944|gb|EEE21275.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
GT1]
Length = 482
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/252 (48%), Positives = 167/252 (66%), Gaps = 17/252 (6%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL 92
R+T+C+S+QVGC+MGC FCATGTMG K NL+ EI+EQL HASR+ IRN+VFMGMGEPL
Sbjct: 77 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRVETIRNIVFMGMGEPL 136
Query: 93 NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 151
+NY ++V ++R MT F + R+ +STVG+ H I + SDLP LA+SLHAP Q
Sbjct: 137 DNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLASDLPACRLALSLHAPDQPT 196
Query: 152 RCQIMP-AARAFPLEKLMNALKEYQKNSQQK-----------IFIEYIMLDGVNDEEQHA 199
R ++MP AA + LE+++ A E+ K QQK + +EYIM+ VND + A
Sbjct: 197 RLKLMPRAAAGWKLERVLEATDEFVK--QQKRLNSTGMKNIGLLVEYIMIQDVNDTLEQA 254
Query: 200 HQLGKLLE--TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
H LG++L+ V+VNLIP+NP ++ S+ ++V F ILR Y I+ VR+ +G
Sbjct: 255 HALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFLTILRKEYAIKVLVRQTLG 314
Query: 258 QDISGACGQLVV 269
QDI ACGQLVV
Sbjct: 315 QDIDSACGQLVV 326
>gi|401396990|ref|XP_003879955.1| radical SAM enzyme, Cfr family, related [Neospora caninum
Liverpool]
gi|325114363|emb|CBZ49920.1| radical SAM enzyme, Cfr family, related [Neospora caninum
Liverpool]
Length = 512
Score = 243 bits (619), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 129/279 (46%), Positives = 176/279 (63%), Gaps = 19/279 (6%)
Query: 20 LGKYNGKPRP--GGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL 77
LGK + RP R+T+C+S+QVGC+MGC FCATGTMG K NL+ EI+EQL HASR+
Sbjct: 74 LGKTSDVARPFKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV 133
Query: 78 SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLP 136
IRN+VFMGMGEPL+NY +V +VR MT F + + +STVG+ H I + SDLP
Sbjct: 134 EKIRNIVFMGMGEPLDNYNNVVASVRFMTQPNKFAIGGHHVCISTVGLPHRIRQLASDLP 193
Query: 137 GLNLAVSLHAPVQDVRCQIMP-AARAFPLEKLMNALKEYQKNSQQK-----------IFI 184
LA+SLHAP Q R ++MP AA + L+++++A E+ K QQK + +
Sbjct: 194 TCRLALSLHAPDQPTRLKLMPRAAAGWKLDRVLDATDEFVK--QQKRVNSTAMKNIGLLV 251
Query: 185 EYIMLDGVNDEEQHAHQLGKLLE--TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 242
EYIM+ VND AH LG++L+ V+VNLIP+NP ++ S+ ++V F +IL
Sbjct: 252 EYIMIQDVNDTIDQAHALGRILQPRADAVIVNLIPYNPTEVPYDYKPSTPERVDEFLRIL 311
Query: 243 RGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 281
R Y+I+ VR+ +GQDI ACGQLVV S + P
Sbjct: 312 RQDYSIKVLVRQTLGQDIDSACGQLVVRAGKDKSGEKVP 350
>gi|255080924|ref|XP_002504028.1| predicted protein [Micromonas sp. RCC299]
gi|226519295|gb|ACO65286.1| predicted protein [Micromonas sp. RCC299]
Length = 485
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/290 (46%), Positives = 180/290 (62%), Gaps = 33/290 (11%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
++ Q+G VE+V+MR+D R TLC+SSQVGCKMGC FCATGT+G
Sbjct: 101 VELQDGHRVESVVMRHDKG-------------RVTLCVSSQVGCKMGCTFCATGTLGELG 147
Query: 61 NLSSGEIVEQLVHASRLSN-----------------IRNVVFMGMGEPLNNYAALVEAVR 103
NL+SGEI+EQLVHA+RL N +RN+VFMGMGEPLNNY A+V A+
Sbjct: 148 NLTSGEILEQLVHANRLFNDDGTGAGLRRVSGTAHGVRNLVFMGMGEPLNNYDAVVGAIG 207
Query: 104 IMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 162
MT F ++P R+TVSTVG+V + + D PG+ LA+SLHAP Q +R +I+P A A+
Sbjct: 208 PMTDPNAFALAPSRVTVSTVGVVPKMRRLVRDAPGVCLALSLHAPNQRLREKIVPTATAY 267
Query: 163 PLEKLMNALKEYQKNSQQ-KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 221
L +++AL EY + + IEY +L GVND + A +LG+L+ V+VNLIP+NP
Sbjct: 268 KLPDILSALDEYLATGPKVRTMIEYCVLGGVNDTTECARELGELMRHRDVIVNLIPYNPT 327
Query: 222 GSVSQFRTSSDDKVSSFQKILRG-SYNIRTTVRKQMGQDISGACGQLVVN 270
+ + V + +L G +N TTVR +MGQDISGACGQL +
Sbjct: 328 ATPMGHSPPKMEDVRAMCAVLTGPEFNQFTTVRHEMGQDISGACGQLALK 377
>gi|397641695|gb|EJK74803.1| hypothetical protein THAOC_03506 [Thalassiosira oceanica]
Length = 476
Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 139/320 (43%), Positives = 186/320 (58%), Gaps = 50/320 (15%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
++ Q+G VE+V+MR+D R T+C+SSQVGC MGC FCATGTMG K
Sbjct: 122 VELQDGHVVESVLMRHDG--------------RVTICVSSQVGCAMGCTFCATGTMGIKG 167
Query: 61 NLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQV 112
+LSSGEI+EQLVH S++ ++IRNVVFMGMGEPLNNY ++ A R M + +
Sbjct: 168 SLSSGEILEQLVHGSKILAQGSNDTSIRNVVFMGMGEPLNNYQNVLAACRSMIDRRTWNL 227
Query: 113 SPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL----- 167
+ R+TVSTVG+V + DLP +NLA+SLHAP Q++R +I+P+AR PL L
Sbjct: 228 AHNRVTVSTVGVVPRMRDLTRDLPQVNLALSLHAPTQEMRERIVPSARGTPLASLVEAVD 287
Query: 168 --MNALKEYQKNSQ-----------------QKIFIEYIMLDGVNDEEQHAHQLGKLLET 208
M AL Q N Q ++ IEY+ML G + AHQLGKL E
Sbjct: 288 AHMMALVNTQDNPQGNGPLDQEKERQFASKKRRAMIEYVMLTGPTSTLEAAHQLGKLCEG 347
Query: 209 FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 268
Q+V+NLIP+N + S++ + F+ I+ Y ++R+ MG DISGACGQLV
Sbjct: 348 RQLVINLIPYNKTDVKDKLSCPSEEHMMKFRSIV-SQYGSFCSIRRTMGSDISGACGQLV 406
Query: 269 VNLPDKISAKSTPPVTDIED 288
V ++ A V DIED
Sbjct: 407 V---EQQKATQNMKVADIED 423
>gi|224003013|ref|XP_002291178.1| hypothetical protein THAPSDRAFT_34735 [Thalassiosira pseudonana
CCMP1335]
gi|220972954|gb|EED91285.1| hypothetical protein THAPSDRAFT_34735, partial [Thalassiosira
pseudonana CCMP1335]
Length = 284
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/273 (48%), Positives = 178/273 (65%), Gaps = 18/273 (6%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
++ Q+G VE+V+MR+ G R+TLC+SSQVGC MGC FCATGTMG +
Sbjct: 24 VELQDGHVVESVLMRH-------------AGSRATLCVSSQVGCAMGCTFCATGTMGIRG 70
Query: 61 NLSSGEIVEQLVHASRL---SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
NL+SGEI+EQLVHASR+ IRNVVFMGMGEPLNNYA ++ A R M + ++ R
Sbjct: 71 NLTSGEILEQLVHASRILAFDLIRNVVFMGMGEPLNNYANVLAACRAMIDRRLWNLAHNR 130
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
+TVSTVG+V I DLP +NLA+SLHAP Q +R I+PAA+ P+E L+ AL +
Sbjct: 131 VTVSTVGVVSRIRDLTRDLPEVNLALSLHAPNQKMREAIVPAAKGTPIESLIEALDAHMM 190
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
+++ IEY+ML+G + AHQLG+L Q+VVNLIP+N + S++ +
Sbjct: 191 AKKKRAMIEYVMLEGDTSTIEAAHQLGQLCRGRQLVVNLIPYNKTDVRDKLSCPSEEHMQ 250
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
F+ I+ SY ++R+ MG DI+GACGQLVV
Sbjct: 251 EFRSIV-SSYGSFCSIRRTMGADIAGACGQLVV 282
>gi|219129697|ref|XP_002185019.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403514|gb|EEC43466.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 387
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 179/290 (61%), Gaps = 13/290 (4%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+G VE+V+MRY S+ N R++LC+SSQ GC MGC FCATGTMG NL+
Sbjct: 105 HDGQLVESVLMRYVSTATSNNS-------RASLCVSSQCGCAMGCTFCATGTMGLSGNLT 157
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTV 122
+GEI+EQ + +L +RNVVFMGMGEPL+NY+ +VEA R + + ++ R+TVSTV
Sbjct: 158 AGEILEQ-IPLPKLDLVRNVVFMGMGEPLDNYSNVVEACRALIDRQRWNLAHGRVTVSTV 216
Query: 123 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 182
G+V I K ++LP ++LA+SLHAP Q R I+P A+ +PLE L++AL ++ QK
Sbjct: 217 GLVSQIRKLTAELPEVSLALSLHAPNQQDRQAIVPTAKHYPLEDLIDALDQHMMAYLQKR 276
Query: 183 ---FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 239
IEY+ML+G + AHQLGKL E +VVNLIP+N R S + + F+
Sbjct: 277 TNPMIEYVMLEGPTSTLECAHQLGKLCENRHLVVNLIPYNQTNVRDVLRCPSREHMEEFR 336
Query: 240 KILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDL 289
+I+ SY T+RK MG DI ACGQL+ +K S D++D+
Sbjct: 337 EIV-ASYGSFCTIRKTMGADIDSACGQLITLRENKQSQNEHNAKGDVKDI 385
>gi|219113956|ref|XP_002176161.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402902|gb|EEC42868.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 471
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 179/290 (61%), Gaps = 13/290 (4%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+G VE+V+MRY S+ N R++LC+SSQ GC MGC FCATGTMG NL+
Sbjct: 105 HDGQLVESVLMRYVSTATSNNS-------RASLCVSSQCGCAMGCTFCATGTMGLSGNLT 157
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTV 122
+GEI+EQ + +L +RNVVFMGMGEPL+NY+ +VEA R + + ++ R+TVSTV
Sbjct: 158 AGEILEQ-IPLPKLDLVRNVVFMGMGEPLDNYSNVVEACRALIDRQRWNLAHGRVTVSTV 216
Query: 123 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 182
G+V I K ++LP ++LA+SLHAP Q R I+P A+ +PLE L++AL ++ QK
Sbjct: 217 GLVSQIRKLTAELPEVSLALSLHAPNQQDRQAIVPTAKHYPLEDLIDALDQHMMAYLQKR 276
Query: 183 ---FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 239
IEY+ML+G + AHQLGKL E +VVNLIP+N R S + + F+
Sbjct: 277 TNPMIEYVMLEGPTSTLECAHQLGKLCENRHLVVNLIPYNQTNVRDVLRCPSREHMEEFR 336
Query: 240 KILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDL 289
+I+ SY T+RK MG DI ACGQL+ +K S D++D+
Sbjct: 337 EIV-VSYGSFCTIRKTMGADIDSACGQLITLRENKQSQNEHNAKGDVKDI 385
>gi|303271119|ref|XP_003054921.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462895|gb|EEH60173.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 327
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/297 (44%), Positives = 175/297 (58%), Gaps = 38/297 (12%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
++ Q+G VEAV+MR+ G G R+TLC+SSQVGCKMGC FCATGT+G
Sbjct: 38 VELQDGHRVEAVVMRHAIHEG--------GRERNTLCVSSQVGCKMGCTFCATGTLGELG 89
Query: 61 NLSSGEIVEQLVHASRL---------------------------SNIRNVVFMGMGEPLN 93
NL+ GEI+EQLVHA RL I N+VFMGMGEPLN
Sbjct: 90 NLTCGEILEQLVHAQRLFRGDGDGDGGDGDGGGASRRVSGRRRGGGITNLVFMGMGEPLN 149
Query: 94 NYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 152
NY A++ A+ +T F ++P R+TVSTVG+V + D PG+ LA+SLHAP Q +R
Sbjct: 150 NYDAVIAALGPITDPKLFALAPSRVTVSTVGVVPRMKTLTRDAPGVALALSLHAPNQALR 209
Query: 153 CQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 211
I+P ARA+ L LM A+ +Y + + K +EY +L GVND +HA +LG+LL V
Sbjct: 210 ESIVPTARAYKLPALMEAMDKYLASGPKVKTMVEYCVLRGVNDGVEHARELGELLRGRDV 269
Query: 212 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG-SYNIRTTVRKQMGQDISGACGQL 267
+VN IP+NP + + V + +L G + TTVR +MGQDI+GACGQL
Sbjct: 270 IVNFIPYNPTDVPMGHAPPTKEAVKAMVDVLTGPEFGQFTTVRHEMGQDIAGACGQL 326
>gi|388496134|gb|AFK36133.1| unknown [Medicago truncatula]
Length = 135
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/136 (79%), Positives = 122/136 (89%), Gaps = 1/136 (0%)
Query: 156 MPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 215
MPAARAFPLEKLM +L+EYQ+ S QKI IEYIMLDGVNDEEQHAH LGKLLETF+VVVNL
Sbjct: 1 MPAARAFPLEKLMASLQEYQRKSLQKILIEYIMLDGVNDEEQHAHLLGKLLETFEVVVNL 60
Query: 216 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 275
IPFN IG++SQF+++S+ KVS FQKILRG+YNIRTTVRKQMG+DISGACGQLVVNLPDK
Sbjct: 61 IPFNSIGTLSQFKSTSEQKVSKFQKILRGTYNIRTTVRKQMGEDISGACGQLVVNLPDK- 119
Query: 276 SAKSTPPVTDIEDLCI 291
S + P+TDIEDL I
Sbjct: 120 SLGNANPLTDIEDLVI 135
>gi|116751471|ref|YP_848158.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|205829911|sp|A0LQM1.1|RLMN_SYNFM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|116700535|gb|ABK19723.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 342
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/250 (48%), Positives = 165/250 (66%), Gaps = 14/250 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR----LSNIRNVV 84
P PRSTLC+SSQVGC +GC FC TG++GFK NLS+ EIV+Q+ R S I N+V
Sbjct: 97 PDLPRSTLCVSSQVGCALGCKFCLTGSLGFKRNLSAAEIVDQVCQVQRDLGSRSRITNIV 156
Query: 85 FMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
FMGMGEPL N +++ A+R++ G+ F S +RIT+ST G+V + + + P +NLA
Sbjct: 157 FMGMGEPLANLDSVLRAIRVIAEPNGMAF--SHRRITLSTAGLVPQLRRLGRESP-VNLA 213
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
VSLHA ++R ++MP R +PLE LM A +EY +++I EYI+LDG+ND+ + A Q
Sbjct: 214 VSLHAAENELRAELMPVNRTYPLEVLMAACREYPLPPRKRITFEYILLDGINDDPKQAKQ 273
Query: 202 LGKLLETFQVVVNLIPFNP-IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
L KLL + VNL+PFNP GSV FR S+ +V +FQ+ L+ + I T VR+ G +I
Sbjct: 274 LVKLLHGIRAKVNLMPFNPHPGSV--FRKPSEQRVLAFQEALQNA-RITTHVRRSRGGEI 330
Query: 261 SGACGQLVVN 270
ACGQLV
Sbjct: 331 GAACGQLVAE 340
>gi|406931239|gb|EKD66544.1| hypothetical protein ACD_49C00036G0007 [uncultured bacterium (gcode
4)]
Length = 345
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 115/273 (42%), Positives = 164/273 (60%), Gaps = 22/273 (8%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G F+E+VIMR+ S R+TLC+SSQ C MGC+FCATG +G + NL
Sbjct: 84 DGLFIESVIMRHLSG-------------RNTLCVSSQAWCPMGCSFCATGKLGLQRNLEF 130
Query: 65 GEIVEQLVHA-----SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRIT 118
EIV+Q++ A + N+RN+V+MGMGEP NY + ++ + F S +R+T
Sbjct: 131 YEIVDQIMEAVLILHAEWKNLRNIVYMGMGEPFLNYPNVKLSLEVACKQQKFDFSSRRVT 190
Query: 119 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178
+ST GI+ I +F D P +LA+SLHAP ++R +IMP +PL LM AL +Y +
Sbjct: 191 ISTCGIISGIKQFWHDFPQTSLAISLHAPNDELRSKIMPVNITYPLNFLMKALDDYTSLT 250
Query: 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV--SQFRTSSDDKVS 236
++IF EYIM+ G+ND ++A QL KLLE VN IP+NP V S + +S ++
Sbjct: 251 NKRIFYEYIMIWGINDSLENAKQLAKLLEWKLAHVNFIPYNPGEWVNSSWYSATSKKRIQ 310
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
FQ+IL S+ I +T+R M DI ACGQL +
Sbjct: 311 EFQQILEKSW-IPSTIRHTMWDDIDAACGQLAL 342
>gi|406927611|gb|EKD63617.1| hypothetical protein ACD_51C00246G0004 [uncultured bacterium]
Length = 340
Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 118/270 (43%), Positives = 170/270 (62%), Gaps = 21/270 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G +EAV+MR+ R T+C+SSQVGC MGC+FCATG MGFK NL+
Sbjct: 81 KDGKKIEAVLMRFKDG-------------RRTVCVSSQVGCAMGCSFCATGKMGFKRNLT 127
Query: 64 SGEIVEQLVH-ASRL----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRI 117
EI +Q+++ AS + I NVVFMGMGEP NNY ++ AVR + + + I
Sbjct: 128 YEEISDQVLYFASDIRSYGETISNVVFMGMGEPFNNYDNVMRAVRFLNDARGLNIGARNI 187
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+ST G+V I K D +NLA+SLHAP Q++R +MP A+ + L++LM+A+ +Y
Sbjct: 188 TLSTSGVVPGILKLMDDGLQVNLAISLHAPNQELRESMMPVAKKYGLDELMDAVTKYTNK 247
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
+ +++ EY+M+ GVND+ AHQLG L+E VNLIP+N + ++F+ S + K+
Sbjct: 248 THRRVSYEYVMIAGVNDDLSLAHQLGNLIEGQLCHVNLIPYN-LTDGNKFKRSLNRKMDD 306
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQL 267
F KIL +Y + TT+R +GQDI ACGQL
Sbjct: 307 FVKILE-TYRVPTTIRVSLGQDIDAACGQL 335
>gi|255074899|ref|XP_002501124.1| predicted protein [Micromonas sp. RCC299]
gi|226516387|gb|ACO62382.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 368
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 173/290 (59%), Gaps = 27/290 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGP--------------RSTLCISSQVGCKMGCN 49
+G VE V++ + S+ +G G R+T+C+SSQVGC MGC
Sbjct: 82 HDGKLVETVVIGHSRSVDDGDGDETRGDGEDADVSDGAKNRVFRNTVCVSSQVGCAMGCT 141
Query: 50 FCATGTMGFKSNLSSGEIVEQLVHASRL---SNIRNVVFMGMGEPLNNYAALVEAVRIMT 106
FC TGT+G +NL++GEI EQ+ HA L + +RNVV MGMGEPL+NY ++ A+R MT
Sbjct: 142 FCETGTLGLMANLTAGEICEQVWHARNLCGSTGVRNVVMMGMGEPLDNYEEVLIALRAMT 201
Query: 107 GLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA--RAFP 163
F + + +TVSTVG+ +I + D P + LA+SLHAP QD+R ++P+A +
Sbjct: 202 HQAVFDMRQRSVTVSTVGVPASIRRLADDAPNVGLALSLHAPTQDLRATLLPSAAGTSHT 261
Query: 164 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP--I 221
L +L +L+ +++ S + IEYI++DGVND HA +LG+L F VNLIP+NP +
Sbjct: 262 LGRLTESLRYHRQKSGRGAMIEYIVIDGVNDSPTHARELGELSGYF---VNLIPYNPTDV 318
Query: 222 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR--KQMGQDISGACGQLVV 269
G +R+ +DD + IL + ++ VR + G+++ GACGQL +
Sbjct: 319 GGTHGYRSPADDALERMASILGDEFGVKAKVRWSTRRGREVDGACGQLAL 368
>gi|66806177|ref|XP_636811.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4]
gi|60465214|gb|EAL63309.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4]
Length = 407
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/252 (44%), Positives = 158/252 (62%), Gaps = 17/252 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P G R TLC+SSQVGC C FC TGT F NL++ EIV Q++ + N
Sbjct: 141 PEGKRGTLCVSSQVGCTFACTFCHTGTQKFIRNLTASEIVSQVIATRHVLNDFTDSSIKR 200
Query: 80 -IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDL 135
+ N+VFMG GEP NY + +A++I+T GL + +ITVST G+V I++ SD
Sbjct: 201 TLTNIVFMGQGEPFYNYRNVSKAIKIITDPNGLA--IGKSKITVSTSGVVPLIDRLGSDF 258
Query: 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDE 195
PG+ LA+SLH+ R +I+PA R +P+ +L+ A ++ KN +++I IEY+ML GVND
Sbjct: 259 PGIGLAISLHSANDKTRSEIVPANRQWPISELVEACIKFSKNCKERITIEYVMLKGVNDS 318
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
EQ A+ L KL ++F VNLIPFNP SQ+++SS + +S F KIL I+ T+R+
Sbjct: 319 EQDAYDLVKLSKSFPSFVNLIPFNPWPG-SQYKSSSKETISQFSKIL-DDKGIKVTIRQP 376
Query: 256 MGQDISGACGQL 267
G+DI ACGQL
Sbjct: 377 RGRDILAACGQL 388
>gi|110834724|ref|YP_693583.1| Fe-S-cluster redox protein [Alcanivorax borkumensis SK2]
gi|123050394|sp|Q0VND7.1|RLMN_ALCBS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|110647835|emb|CAL17311.1| conserved Fe-S-cluster redox protein, putative [Alcanivorax
borkumensis SK2]
Length = 381
Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 125/286 (43%), Positives = 166/286 (58%), Gaps = 30/286 (10%)
Query: 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSN 61
+ NGG VE V + P G R TLC+SSQVGC + C+FC+TG GF+ +
Sbjct: 87 EMDNGGAVETVFI--------------PDGRRGTLCVSSQVGCAVDCSFCSTGKQGFQRD 132
Query: 62 LSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQ 111
++S EI+ Q+ ASR I NVV MGMGEPL NY ++ A+RIM L +
Sbjct: 133 MTSAEIIGQVWQASRAFGPRRNLGQHPITNVVMMGMGEPLLNYDKVLTAMRIMKDDLGYG 192
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+ KRITVST G++ +N+ DL ++LAVSLHAP ++R Q++P R +PL+ LM A
Sbjct: 193 IGKKRITVSTSGVIPKMNQLSEDL-DVSLAVSLHAPNDELRNQLVPLNRKYPLKDLMAAC 251
Query: 172 KEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 228
K Y KN + I +EY+ML VND+ +HA QL KLL V VNLIPFNP R
Sbjct: 252 KRYSKNITHRHNTITMEYVMLRDVNDKPEHARQLVKLLNGIPVKVNLIPFNPFPHAGYER 311
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
+ +D + F K L + + TTVR G DI ACGQLV + D+
Sbjct: 312 SRKND-ILEFHKYLNDN-GVMTTVRTTRGDDIDAACGQLVGQVKDR 355
>gi|254427443|ref|ZP_05041150.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
gi|196193612|gb|EDX88571.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
Length = 380
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 125/286 (43%), Positives = 166/286 (58%), Gaps = 30/286 (10%)
Query: 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSN 61
+ NGG VE V + P G R TLC+SSQVGC + C+FC+TG GF+ +
Sbjct: 87 EMDNGGAVETVFI--------------PDGRRGTLCVSSQVGCAVDCSFCSTGKQGFQRD 132
Query: 62 LSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQ 111
++S EI+ Q+ ASR I NVV MGMGEPL NY ++ A+RIM L +
Sbjct: 133 MTSAEIIGQVWQASRAFGPRRNLGQHPITNVVMMGMGEPLLNYDKVLTAMRIMKDDLGYG 192
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+ KRITVST G++ +N+ DL ++LAVSLHAP ++R Q++P R +PL+ LM A
Sbjct: 193 IGKKRITVSTSGVIPKMNQLSEDL-DVSLAVSLHAPNDELRNQLVPLNRKYPLKDLMAAC 251
Query: 172 KEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 228
K Y KN + I +EY+ML VND+ +HA QL KLL V VNLIPFNP R
Sbjct: 252 KSYSKNITHRHNTITMEYVMLRDVNDKPEHARQLVKLLNGIPVKVNLIPFNPFPHAGYER 311
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
+ +D + F K L + + TTVR G DI ACGQLV + D+
Sbjct: 312 SRKND-ILEFHKYLNDN-GVMTTVRTTRGDDIDAACGQLVGQVKDR 355
>gi|308802175|ref|XP_003078401.1| unnamed protein product [Ostreococcus tauri]
gi|116056853|emb|CAL53142.1| unnamed protein product [Ostreococcus tauri]
Length = 368
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/276 (41%), Positives = 165/276 (59%), Gaps = 28/276 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
++ Q+G +EA +MR+ R+TLC+SSQVGCKMGC FCATGT+G
Sbjct: 44 VELQDGHKIEACVMRHAKG-------------RTTLCVSSQVGCKMGCTFCATGTLGELG 90
Query: 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITV 119
NL+S EI+EQL HA+R++ PLNNY +++EA+ +MT F +S +ITV
Sbjct: 91 NLASFEILEQLAHANRVA-----------APLNNYDSVIEAIGVMTDDKAFALSASKITV 139
Query: 120 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNS 178
STVG++ + D PG LA+SLHAP Q++R +I+P A A+ L+ LM L+EY
Sbjct: 140 STVGVIPRMRTLTRDAPGTCLALSLHAPTQELRQKIVPTATAYKLDDLMRVLEEYLASGP 199
Query: 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLL--ETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
+ K IEY +L GVND+E A +LG+L + ++++NLIP NP + + + + V
Sbjct: 200 KMKTMIEYCVLGGVNDDETCAEKLGELFRGKEEKIILNLIPLNPTDTPAGHVPPTPEAVR 259
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 272
+IL Y + T R MG DI+GACGQL + P
Sbjct: 260 KMMEILMKKYGLFVTRRHTMGDDIAGACGQLALKTP 295
>gi|402847470|ref|ZP_10895754.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas sp. oral taxon
279 str. F0450]
gi|402266328|gb|EJU15767.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas sp. oral taxon
279 str. F0450]
Length = 349
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/266 (43%), Positives = 161/266 (60%), Gaps = 22/266 (8%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
GG VEAV + P R+TLCISSQVGCKM C FC TG GFK NLSS
Sbjct: 89 TGGLVEAVFI--------------PDKDRATLCISSQVGCKMDCLFCMTGKQGFKGNLSS 134
Query: 65 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVST 121
GEI+ Q++ +++ NVV+MGMGEPL+N +++++ ++T GL + SPKRIT+ST
Sbjct: 135 GEIINQVLSVEESASLTNVVYMGMGEPLDNATNVLKSISVLTSAWGLGW--SPKRITLST 192
Query: 122 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181
VG+ + +F S+ +LAVSLH P + R ++MPA PLE + ++E Q++
Sbjct: 193 VGVRRGLERFLSETT-CHLAVSLHNPFHEGRLELMPAEGGLPLEDTLQMIREADFTGQRR 251
Query: 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241
+ EYI+ DGVND ++HA +L +LL +NLIPF+ I V R S DK+ F++
Sbjct: 252 VSFEYIVFDGVNDSDEHAAELARLLRGIPCRINLIPFHQIPDVP-LRPLSRDKMEHFKRQ 310
Query: 242 LRGSYNIRTTVRKQMGQDISGACGQL 267
L S TT+R G+DIS ACG L
Sbjct: 311 LE-SRGYTTTIRTSRGEDISAACGML 335
>gi|444910471|ref|ZP_21230655.1| Ribosomal RNA large subunit methyltransferase N [Cystobacter fuscus
DSM 2262]
gi|444719090|gb|ELW59889.1| Ribosomal RNA large subunit methyltransferase N [Cystobacter fuscus
DSM 2262]
Length = 362
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/274 (41%), Positives = 161/274 (58%), Gaps = 24/274 (8%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++G VE V+MR+ R+T+C+S+Q GC MGC FCATG MGF
Sbjct: 90 LRLRDGQTVETVLMRFKG--------------RATVCLSTQAGCAMGCVFCATGQMGFVR 135
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSP 114
+LS GEI+ Q++H +RL ++RNVV MGMGEPL+NY + AV I+ L + P
Sbjct: 136 HLSPGEIIGQVLHVTRLLRETNESLRNVVLMGMGEPLHNYEGTLAAVDILVDALGLALGP 195
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ IT+STVG+V I + + + LAVSLH R ++PAAR + L +LM+A + Y
Sbjct: 196 RFITLSTVGVVPGIRRLADEDRPVQLAVSLHGATDAERGALVPAARKWSLAELMDACRYY 255
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP-IGSVSQFRTSSDD 233
+++IF E+ ++ G ND + AH LG LL+ VNLIP NP +G Q S D
Sbjct: 256 TDKRKRRIFYEWALISGRNDTPEQAHALGALLQGMDAHVNLIPLNPTVGYAEQ--PSGPD 313
Query: 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V +FQ IL G Y + +TVR++ G DI CGQL
Sbjct: 314 SVRAFQDILAG-YGLPSTVRQRRGIDIDAGCGQL 346
>gi|333384068|ref|ZP_08475712.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas gadei
ATCC BAA-286]
gi|332826949|gb|EGJ99746.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas gadei
ATCC BAA-286]
Length = 335
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 112/267 (41%), Positives = 161/267 (60%), Gaps = 22/267 (8%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+N +EAV++ P R+TLC+SSQVGCKM C FC TG GF NL+
Sbjct: 78 ENDKLIEAVMI--------------PEDDRATLCVSSQVGCKMNCLFCMTGKQGFNGNLT 123
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVS 120
+ EI+ QL ++ NVVFMGMGEPL+NY L + + IMT G+ + SPKRITVS
Sbjct: 124 ANEILNQLYSVREAEDLTNVVFMGMGEPLDNYEQLKKTLEIMTADYGMAW--SPKRITVS 181
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
T G+ + +F D +LA+S+H+P ++ R IMPA +AFP+ +M+ LKEY Q+
Sbjct: 182 TTGVTPKLKRFL-DESNAHLAISIHSPEKEQRLSIMPAEKAFPIAGVMDLLKEYDWTKQR 240
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
++ EYIM D ND HA +L ++L + VNLI F+ I +V+ +TS+ +K+ +F+
Sbjct: 241 RLSFEYIMFDNFNDSLVHAKELAQMLRGIECRVNLIRFHAIPNVN-LKTSTKEKMEAFRD 299
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQL 267
L S + +T+R G+DI ACG L
Sbjct: 300 YL-TSKGVTSTIRASRGEDIFAACGML 325
>gi|338733713|ref|YP_004672186.1| ribosomal RNA large subunit methyltransferase N 2 [Simkania
negevensis Z]
gi|336483096|emb|CCB89695.1| ribosomal RNA large subunit methyltransferase N 2 [Simkania
negevensis Z]
Length = 362
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 166/254 (65%), Gaps = 9/254 (3%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVH-----ASRLSNIRNVVF 85
G R T+C+SSQVGC C FCA+G G NL++GEI EQ++ + ++ ++VF
Sbjct: 107 GDRRTVCVSSQVGCPARCAFCASGKEGLIRNLTAGEIHEQVLQIQAQLKKKGEHVSHIVF 166
Query: 86 MGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
MGMGEPL+NY +V+A+R++T L +SP+RITVSTVG+V I K + +NLA+SL
Sbjct: 167 MGMGEPLDNYDQVVKALRLLTHPLALNLSPRRITVSTVGVVEGIEKLMDEEISVNLALSL 226
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
HAP Q++R +I+P +R + LE ++ A+ Y K +++ + EY++L G+ND + A +LG+
Sbjct: 227 HAPNQNLRKKIVPYSRKYLLEDILKAVDLYSKKTKRDLTYEYVLLKGINDSRKEAQELGE 286
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LL+ VNLIP+NP+ ++ + + + +F++IL + IR+T R G+DI+ AC
Sbjct: 287 LLKGQHCCVNLIPYNPVDGLN-LKRPEKESIEAFREILDRA-GIRSTWRYTKGKDIAAAC 344
Query: 265 GQLVV-NLPDKISA 277
GQL + +P K A
Sbjct: 345 GQLALKKMPPKEEA 358
>gi|406873763|gb|EKD23850.1| hypothetical protein ACD_81C00165G0001 [uncultured bacterium]
Length = 335
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 157/244 (64%), Gaps = 12/244 (4%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVF 85
G R+T+C+SSQVGC MGC FCATG +GFK NL++ EIVEQ+++ +R + N+VF
Sbjct: 88 GDRNTVCVSSQVGCPMGCLFCATGKLGFKRNLTADEIVEQVLYFARQLKKENKRVTNIVF 147
Query: 86 MGMGEPLNNYAALVEAVRIMTGLP--FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEP+ NY ++ A+RI+ P F + +R+++ST GI I KF + +NLA+S
Sbjct: 148 MGMGEPMVNYDNVMAAIRILNN-PNGFNLGARRMSISTSGIPEGIRKFAREGLEVNLALS 206
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 203
LHAP ++RC+IMP +R LE++M+AL+EY + +KI EYIM+ V D + AH+L
Sbjct: 207 LHAPNNELRCKIMPVSRRHSLEEVMDALREYVDITHRKIMFEYIMIKDVTDTPELAHELV 266
Query: 204 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 263
KLL + VNLI +N F S+ +++ F++IL + I R GQDI GA
Sbjct: 267 KLLSGWLGYVNLINYN---QTEMFAPSTRERIEEFKQILEDGH-ITVVQRYTFGQDIDGA 322
Query: 264 CGQL 267
CGQL
Sbjct: 323 CGQL 326
>gi|205829720|sp|Q6MDD0.2|RLMN2_PARUW RecName: Full=Probable dual-specificity RNA methyltransferase RlmN
2; AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase 2; AltName:
Full=23S rRNA m2A2503 methyltransferase 2; AltName:
Full=Ribosomal RNA large subunit methyltransferase N 2;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase
2; AltName: Full=tRNA m2A37 methyltransferase 2
Length = 358
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 155/246 (63%), Gaps = 8/246 (3%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVH-----ASRLSNIRNVVF 85
G R T+C+SSQVGC C FCA+G GF NL EI+EQ++ +S+ + +VV+
Sbjct: 97 GIRRTVCVSSQVGCPAKCAFCASGQQGFFRNLRPTEIIEQILQINAWLSSKGEKVSHVVY 156
Query: 86 MGMGEPLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
MGMGEPL NY ++V ++R+++ F +S +RITVSTVG+V I + + +NL +SL
Sbjct: 157 MGMGEPLKNYESVVASIRVLSHPDFCNISQRRITVSTVGVVEGIKRLSKEGLKVNLVLSL 216
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
HAP Q +R +I+P AR +PLE+++ ++ EY + +++ I EY +L G+ND HAH+L
Sbjct: 217 HAPNQHIRKKIIPYARKYPLEEILESMDEYAQKTKRDITFEYTLLAGINDHPDHAHELAH 276
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LL+ Q VNLIP+NPI + + + + F+ +L GS+ I T R G DI AC
Sbjct: 277 LLKGKQCTVNLIPYNPIPGL-RLKRPEKKAIKQFRSVLYGSH-IVNTCRYTKGDDIGAAC 334
Query: 265 GQLVVN 270
GQL +
Sbjct: 335 GQLALQ 340
>gi|108760323|ref|YP_629532.1| radical SAM protein [Myxococcus xanthus DK 1622]
gi|123374780|sp|Q1DCU1.1|RLMN1_MYXXD RecName: Full=Dual-specificity RNA methyltransferase RlmN 1;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase 1; AltName:
Full=23S rRNA m2A2503 methyltransferase 1; AltName:
Full=Ribosomal RNA large subunit methyltransferase N 1;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase
1; AltName: Full=tRNA m2A37 methyltransferase 1
gi|108464203|gb|ABF89388.1| radical SAM enzyme, Cfr family [Myxococcus xanthus DK 1622]
Length = 359
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 168/287 (58%), Gaps = 22/287 (7%)
Query: 7 GFVEAVIMRYDSS------LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
GF +++R D L ++ G R+T+CIS+Q GC MGC FCATG MG
Sbjct: 80 GFTHKLLLRLDDGQTIETVLMRFKG-------RATVCISTQAGCAMGCVFCATGQMGLSR 132
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSP 114
+L+ GEIV Q++H +R+ +RNVV MGMGEPL+NY + AV ++ L + P
Sbjct: 133 HLTPGEIVGQILHVNRILRASGETLRNVVLMGMGEPLHNYEHTMSAVDVLVDALGLAMGP 192
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ IT+STVG+V I + + ++LAVSLH R ++PA R +PL++LM+A + Y
Sbjct: 193 RFITLSTVGVVPGIRRLADEERPIHLAVSLHGATDAERAALVPAGRRWPLDELMDACRYY 252
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
+ +++IF E+ ++ G ND +HAH LG+LL VN+IP NP S +
Sbjct: 253 SEKRKRRIFFEWTLISGRNDTAEHAHTLGQLLRGMDAHVNVIPLNPTVGYDGG-PSRPES 311
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 281
V +FQ +L +Y++ +TVR++ G DI CGQL + ++ S +S P
Sbjct: 312 VRAFQDVL-ATYDVPSTVRQRRGIDIDAGCGQLKATV-ERRSRRSLP 356
>gi|46446329|ref|YP_007694.1| hypothetical protein pc0695 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399970|emb|CAF23419.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 330
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 155/246 (63%), Gaps = 8/246 (3%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVH-----ASRLSNIRNVVF 85
G R T+C+SSQVGC C FCA+G GF NL EI+EQ++ +S+ + +VV+
Sbjct: 69 GIRRTVCVSSQVGCPAKCAFCASGQQGFFRNLRPTEIIEQILQINAWLSSKGEKVSHVVY 128
Query: 86 MGMGEPLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
MGMGEPL NY ++V ++R+++ F +S +RITVSTVG+V I + + +NL +SL
Sbjct: 129 MGMGEPLKNYESVVASIRVLSHPDFCNISQRRITVSTVGVVEGIKRLSKEGLKVNLVLSL 188
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
HAP Q +R +I+P AR +PLE+++ ++ EY + +++ I EY +L G+ND HAH+L
Sbjct: 189 HAPNQHIRKKIIPYARKYPLEEILESMDEYAQKTKRDITFEYTLLAGINDHPDHAHELAH 248
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LL+ Q VNLIP+NPI + + + + F+ +L GS+ I T R G DI AC
Sbjct: 249 LLKGKQCTVNLIPYNPIPGL-RLKRPEKKAIKQFRSVLYGSH-IVNTCRYTKGDDIGAAC 306
Query: 265 GQLVVN 270
GQL +
Sbjct: 307 GQLALQ 312
>gi|298245810|ref|ZP_06969616.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963]
gi|297553291|gb|EFH87156.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963]
Length = 388
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 174/299 (58%), Gaps = 35/299 (11%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
++ +G +E+V+M Y LG+ + R+T+C+SSQ GC GC FCATG MGF
Sbjct: 99 LELADGKLIESVLMLY-PPLGESSA-------RATICVSSQAGCAFGCTFCATGQMGFDR 150
Query: 61 NLSSGEIVEQLVHASR-----------------LSNIRNVVFMGMGEPLNNYAALVEAVR 103
+L SGEI+ Q++H +R + +I N+V MGMGEPL+NY +++A+R
Sbjct: 151 HLQSGEIIAQVLHFARELRATPWSAAGLPGSTPIDHITNIVLMGMGEPLHNYDNVLQALR 210
Query: 104 IM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 162
I+ + F + + +TVSTVG+V AI K + +NLA+SLHAP + R Q MP R +
Sbjct: 211 ILNSAAGFNLGARHMTVSTVGLVPAIRKLSQEQLQVNLAISLHAPTNEARSQTMPVNRKY 270
Query: 163 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNP 220
PLE+L+ A ++Y +++++ EY++L GVND + A QL +LL + VN IP N
Sbjct: 271 PLEELLAACQDYIAATRRQVTFEYVLLAGVNDTPERAQQLAELLAPLKQFAHVNCIPVN- 329
Query: 221 IGSVSQFRTSSDDKVSSFQKIL--RGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 277
+ + +R D + +F+ IL RG I +VR + G DI+ ACGQL D+ A
Sbjct: 330 -ATSAGYRPPGPDAIRAFRNILFERG---ISNSVRAERGDDIAAACGQLRTRFEDRRKA 384
>gi|407013702|gb|EKE27806.1| Ribosomal RNA large subunit methyltransferase N [uncultured
bacterium (gcode 4)]
Length = 355
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/275 (40%), Positives = 158/275 (57%), Gaps = 22/275 (8%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ + F+EAVIMR+ S R+TLC+SSQVGC M C FCAT + F
Sbjct: 80 FETTDWNFLEAVIMRHLSW-------------RNTLCVSSQVGCPMACAFCATWKLWFTR 126
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSP 114
NL EIVEQ++ AS+L N+RN+V+M M EP NY + +++ I+ S
Sbjct: 127 NLEFYEIVEQILFASKLLDSEWKNLRNIVYMWMWEPFLNYENVKKSIEIVCSQNKLDFSN 186
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+R+T+ST IV I KF +D P +LA+SLHA ++R IMP +PL LM AL+EY
Sbjct: 187 RRVTISTCWIVPWIKKFWTDFPQTSLAISLHAATDELRKSIMPCNIMYPLSMLMPALEEY 246
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN--PIGSVSQFRTSSD 232
+ +K+F EYIM+ VND ++A L +LL VN IP+N S S+ +++S
Sbjct: 247 VAKTNKKVFYEYIMIAWVNDSLENAKDLAELLRWKLAHVNFIPYNEGEGDSESEMKSTSK 306
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ FQ IL + +++T+R MG DI AC QL
Sbjct: 307 SRIKEFQNILFDVW-LQSTIRHTMGDDIDAACWQL 340
>gi|333377200|ref|ZP_08468936.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas
mossii DSM 22836]
gi|332886413|gb|EGK06657.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas
mossii DSM 22836]
Length = 341
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 155/252 (61%), Gaps = 8/252 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLC+SSQVGCKM C FC TG GF NL++ EI+ QL ++ NVVFMGM
Sbjct: 89 PEDDRATLCVSSQVGCKMNCLFCMTGKQGFNGNLTANEILNQLYSVREAESLTNVVFMGM 148
Query: 89 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GEPL+NY L + + IMT G+ + SPKRITVST G+ + +F D +LA+S+H
Sbjct: 149 GEPLDNYEELKKTLEIMTADYGMAW--SPKRITVSTTGVTPKLKRFL-DESNAHLAISIH 205
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 205
+P ++ R IMPA +AFP+ +M+ L++Y Q+++ EYIM D ND HA +L ++
Sbjct: 206 SPEKEQRLSIMPAEKAFPITGVMDLLRQYDWTKQRRLSFEYIMFDNFNDSLIHAKELTQM 265
Query: 206 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 265
L + VNLI F+ I +V +TS+ +K+ +F+ L + +T+R G+DI ACG
Sbjct: 266 LRGVECRVNLIRFHAIPNVD-LKTSTKEKMEAFRDYLTKK-GVTSTIRASRGEDIFAACG 323
Query: 266 QLVVNLPDKISA 277
L D +SA
Sbjct: 324 MLSTMKGDALSA 335
>gi|319790295|ref|YP_004151928.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
gi|317114797|gb|ADU97287.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
Length = 345
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 154/244 (63%), Gaps = 7/244 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----SNIRNVV 84
P +TLC+S+QVGC GC FC T GF NL++GEIV+Q + R I NVV
Sbjct: 95 PEKDWNTLCVSTQVGCPAGCRFCLTAKDGFTRNLTAGEIVDQYIQVQRDVGENRRISNVV 154
Query: 85 FMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
FMGMGEPL N+ + +AV IMT +S +++TVSTVGIV I++ ++ + LAVS
Sbjct: 155 FMGMGEPLLNFDNVKKAVEIMTHRDMLDLSTRKVTVSTVGIVPGIDRMAKEMNKVKLAVS 214
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 203
LHA +VR ++P R +P+ ++M AL+ Y ++ ++I IEY+ML GVND + A +L
Sbjct: 215 LHATTDEVRNMLVPLNRKYPIGEIMAALRRYPADNNRRIMIEYVMLKGVNDSLEDARRLV 274
Query: 204 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 263
KL++ V VNLIPFNP ++F + +++ +FQK+L +NI +R GQDIS A
Sbjct: 275 KLVKGIPVKVNLIPFNPYPG-AEFEPTPREQIEAFQKVL-WDHNIAAFIRDSRGQDISAA 332
Query: 264 CGQL 267
CG L
Sbjct: 333 CGML 336
>gi|325294881|ref|YP_004281395.1| ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065329|gb|ADY73336.1| Ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 345
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 154/244 (63%), Gaps = 7/244 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----SNIRNVV 84
P +TLC+S+QVGC +GC FC T GF NL++ EIV+Q +H R I NVV
Sbjct: 95 PEKDWNTLCVSTQVGCPVGCKFCLTAKDGFTRNLTAAEIVDQYIHVQRDVGEDKRISNVV 154
Query: 85 FMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
FMGMGEP N+ + +AV IMT +S ++IT+STVG+V I++ ++ + LA+S
Sbjct: 155 FMGMGEPFLNFENVKKAVEIMTDKNMLDLSTRKITISTVGVVPGIDRMAKEMNKVKLAIS 214
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 203
LHA +VR +I+P R +P+ ++M AL+ Y ++ ++I IEY+ML+GVND + A +L
Sbjct: 215 LHATTDEVREKIVPLNRKYPISEIMAALRRYPADNIRRIMIEYVMLEGVNDSVEDAKRLV 274
Query: 204 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 263
KL++ V VNLIPFN + F+ SS ++ FQK+L +NI +R GQDIS A
Sbjct: 275 KLVKGIPVKVNLIPFNSYPG-APFKPSSKEQTEKFQKVL-WDHNIAAFIRDSRGQDISAA 332
Query: 264 CGQL 267
CG L
Sbjct: 333 CGML 336
>gi|86742258|ref|YP_482658.1| ribosomal RNA large subunit methyltransferase N [Frankia sp. CcI3]
gi|123764529|sp|Q2J713.1|RLMN_FRASC RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|86569120|gb|ABD12929.1| 23S rRNA m(2)A-2503 methyltransferase [Frankia sp. CcI3]
Length = 421
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 116/279 (41%), Positives = 164/279 (58%), Gaps = 29/279 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+VIMRY R+T+C+SSQ GC MGC FCATG G NLS+
Sbjct: 122 DGASLESVIMRYPD--------------RATVCVSSQAGCGMGCPFCATGQGGLTRNLST 167
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
EIVEQ+VHA+R+ + + NVVFMGMGEPL NYAA++ A+R +T P
Sbjct: 168 AEIVEQVVHAARVLRRRELAGGETRLSNVVFMGMGEPLANYAAVIAALRRLTAHPPEGLG 227
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + +TVSTVG+V AI + + + LAVSLHAP +R +++P +P+ +++ A
Sbjct: 228 LSARGLTVSTVGLVPAIRRLAGEGLPVTLAVSLHAPDDVLRNELVPINTRWPVVEVLAAA 287
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
EY + + +++ +EY ++DGVND+ A L LL VNLIP NP G S +R S+
Sbjct: 288 WEYAEVTGRRVSVEYALIDGVNDDVGRADALADLLVGRLAHVNLIPLNPTGG-SSWRASA 346
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
+F + LR I TTVR G++I+ ACGQL
Sbjct: 347 PAGQRAFVRRLR-DRGIVTTVRDTRGREIAAACGQLAAE 384
>gi|251770958|gb|EES51543.1| radical SAM family protein [Leptospirillum ferrodiazotrophum]
Length = 357
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 116/281 (41%), Positives = 167/281 (59%), Gaps = 33/281 (11%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ Q+G +E+V++ PR G + TLC+S+Q GC +GC FC T +MG
Sbjct: 81 LRLQDGPVIESVLI------------PRKG--QWTLCLSTQAGCGIGCRFCRTASMGLTR 126
Query: 61 NLSSGEIVEQLVHASRL--------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----G 107
NLS+ EI+ Q + A+R S+I ++VFMGMGEPL N AL+ A+R +T G
Sbjct: 127 NLSTAEILSQWLLAARFVETLPPGESHIDHIVFMGMGEPLANLEALIPAIRSLTHPDGAG 186
Query: 108 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 167
L SP+RITVST G+V I+ G+ LA+SL AP +R +IMP R + +E++
Sbjct: 187 L----SPRRITVSTSGLVPRIDTLGEANTGVRLAISLCAPDDALRREIMPVGRIYSIEEI 242
Query: 168 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 227
+ A + + ++ +I EY++L GVND A QLG+LL F+ VNLIPFNP S +
Sbjct: 243 LAACRRFPLRNRDRITFEYVLLAGVNDSPLQARQLGRLLAPFRSKVNLIPFNPFPG-SPY 301
Query: 228 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 268
+D V++FQ++L G ++I TVRK MG D+ ACGQL
Sbjct: 302 HRPTDSSVAAFQEVLAG-FHITATVRKSMGPDVLAACGQLA 341
>gi|161528893|ref|YP_001582719.1| radical SAM protein [Nitrosopumilus maritimus SCM1]
gi|205829829|sp|A9A3L9.1|RLMN_NITMS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase
gi|160340194|gb|ABX13281.1| radical SAM enzyme, Cfr family [Nitrosopumilus maritimus SCM1]
Length = 351
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 173/278 (62%), Gaps = 18/278 (6%)
Query: 1 MDCQNGGFVEAVIMRYD-SSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFK 59
++ +G VE V+M+Y+ + +G G PRST+C+S+Q+GC MGC FCATG MGF+
Sbjct: 83 LELSDGSSVETVLMQYEPTKIG--------GHPRSTICVSTQIGCAMGCVFCATGQMGFE 134
Query: 60 SNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVS 113
+NL + IV Q++H + L ++ N+VFMGMGEP+ NY ++ AV+I+T F +
Sbjct: 135 TNLKAEHIVSQVIHFAELLEQRGEHVTNLVFMGMGEPMANYDEMIRAVKILTHDRGFGLG 194
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
+ IT+ST+GI I K + + LA+SLHAP ++R +++P A +E ++ + ++
Sbjct: 195 QRHITISTIGITSGIEKLAEENLQIGLAISLHAPNNELRKKLVPTAGPNSVEDIIKSGRD 254
Query: 174 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDD 233
Y K + +++ EY +++GVND + AH+L +LL VN+IP NP + F+ S+
Sbjct: 255 YFKKTGRRVTFEYALMEGVNDSPEIAHELARLLRGNGSHVNIIPINP--TAGDFKRPSEK 312
Query: 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 271
V F++ILR S + TVR + G +IS ACGQL ++
Sbjct: 313 NVLEFEQILRKS-GVNCTVRVEKGTEISAACGQLRTDI 349
>gi|336179481|ref|YP_004584856.1| ribosomal RNA large subunit methyltransferase N [Frankia symbiont
of Datisca glomerata]
gi|334860461|gb|AEH10935.1| Ribosomal RNA large subunit methyltransferase N [Frankia symbiont
of Datisca glomerata]
Length = 413
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 166/291 (57%), Gaps = 33/291 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY R+T+C+SSQ GC MGC FCATG G NLS+
Sbjct: 130 DGVLIESVLMRYPD--------------RATVCVSSQAGCGMGCPFCATGQGGLTRNLSA 175
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
EIVEQ+V A+ + + NVVFMGMGEPL NYA +V A+R++T P
Sbjct: 176 AEIVEQVVAAAGAIARGELAGGPARLSNVVFMGMGEPLANYATVVAALRVLTAPPPAGLG 235
Query: 112 VSPKRITVSTVGIVHAINKFH-SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+S + ITVSTVG+V AI + + LP + LAVSLHAP ++R ++P R +P+ +++ A
Sbjct: 236 LSARSITVSTVGLVPAIRRLAGAGLP-VTLAVSLHAPDDELRDSLVPVNRRWPVAEVLTA 294
Query: 171 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS-QFRT 229
EY + + +++ IEY ++D VND+ + A L LL VNLIP NP VS Q
Sbjct: 295 AWEYAETTGRRVSIEYALIDDVNDQPERADALADLLVGRLAHVNLIPLNPTRGVSWQASE 354
Query: 230 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 280
++ + LRG I TVR G+DI+ ACGQL + P +S T
Sbjct: 355 RRREREFVRRLRLRG---ITATVRDTRGRDIAAACGQLAADAPTGLSGPGT 402
>gi|350563236|ref|ZP_08932058.1| radical SAM enzyme, Cfr family [Thioalkalimicrobium aerophilum AL3]
gi|349779100|gb|EGZ33447.1| radical SAM enzyme, Cfr family [Thioalkalimicrobium aerophilum AL3]
Length = 378
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/257 (44%), Positives = 156/257 (60%), Gaps = 14/257 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--------SNI 80
P R TLCISSQVGC + C+FCAT GF NL + EI+ Q+ A++ I
Sbjct: 110 PEADRGTLCISSQVGCALDCSFCATAQQGFNRNLENWEIIAQMWVANKALGANPKAERKI 169
Query: 81 RNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVVFMGMGEPL N + ++ M + +S +R+T+ST G+V AI+K ++ ++
Sbjct: 170 SNVVFMGMGEPLLNVTHVFPVAKLLMDDNAYGLSKRRVTISTAGVVPAIDKLKDEV-DVS 228
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQ 197
LA+SLHAP +R Q++P + +PLE LM AL Y + K I +EY+MLD VNDEE+
Sbjct: 229 LAISLHAPNNALRDQLVPINKKYPLEVLMPALHRYVADGHAKKHITVEYVMLDQVNDEEE 288
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HAHQL +LL VNLIPFNP + R SS+++V FQ++L + I T+RK G
Sbjct: 289 HAHQLVELLGNLICKVNLIPFNPFPNTPYLR-SSNNRVHRFQRVLHEA-GINCTIRKTRG 346
Query: 258 QDISGACGQLVVNLPDK 274
DI ACGQL + D+
Sbjct: 347 DDIDAACGQLAGKVKDR 363
>gi|333985584|ref|YP_004514794.1| ribosomal RNA large subunit methyltransferase N [Methylomonas
methanica MC09]
gi|333809625|gb|AEG02295.1| Ribosomal RNA large subunit methyltransferase N [Methylomonas
methanica MC09]
Length = 371
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/266 (45%), Positives = 166/266 (62%), Gaps = 16/266 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-SRLSN---IRNVV 84
P R+TLCISSQVGC + C+FC+T GF NLS+ E++ QL A RL + I NVV
Sbjct: 106 PEERRATLCISSQVGCALACSFCSTAQQGFNRNLSTAEVIGQLYLAQQRLGSEHRITNVV 165
Query: 85 FMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N+ +V A+ +M F +S +R+T+ST G+V A+++ H D+ +++AVS
Sbjct: 166 MMGMGEPLLNFDNVVAAMNLMMDDFAFGLSKRRVTISTSGVVPAMHRLH-DVCDVSMAVS 224
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQL 202
LHAP ++R Q++P +PL +LM+A + Y KN +K I EY+MLDG+ND + A L
Sbjct: 225 LHAPNDELRNQLVPINIKYPLTELMDACRAYAKNGPRKHITFEYVMLDGINDSMEDARTL 284
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
KLL+ VNLIPFNP SQ+R S + F+ IL + I TT+RK G DI
Sbjct: 285 VKLLKNVPSKVNLIPFNPFPQ-SQYRCSEMAAILKFRDILHNA-GIVTTIRKTRGDDIDA 342
Query: 263 ACGQLVVNLPDKI-------SAKSTP 281
ACGQLV + DK +A++TP
Sbjct: 343 ACGQLVGQVQDKSRRHLKLQAARTTP 368
>gi|344338112|ref|ZP_08769045.1| Ribosomal RNA large subunit methyltransferase N [Thiocapsa marina
5811]
gi|343802166|gb|EGV20107.1| Ribosomal RNA large subunit methyltransferase N [Thiocapsa marina
5811]
Length = 376
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/250 (44%), Positives = 161/250 (64%), Gaps = 7/250 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNI--RNVVFM 86
P G R+T+C+SSQVGC + C+FCAT T GF NL+ GEI Q+ HA+R + NVV M
Sbjct: 101 PEGRRTTICVSSQVGCALNCSFCATATQGFNRNLTVGEIAGQIWHATRQTGAAPSNVVMM 160
Query: 87 GMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GMGEPL N+ A+V+A+ IM + ++ R+T+ST GIV I + ++ ++LAVSLH
Sbjct: 161 GMGEPLANFDAVVKAMDIMQDDFAYMIAKTRLTLSTSGIVPNIYRLR-EVSDVSLAVSLH 219
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
AP +R +++P R +PL +L+ A K Y + +++I EY+MLDG+ND HA Q+ +
Sbjct: 220 APNDALRDELVPINRKYPLAELLPACKAYVGADKRRRITWEYVMLDGINDSLAHAKQMIR 279
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LLE VNLIPFNP +Q+ TS +++ +F+ L G+ I T RK G +I+ AC
Sbjct: 280 LLEGIPSKVNLIPFNPFPG-NQYGTSPPERIEAFRARLAGA-GIFTMTRKTRGDEIAAAC 337
Query: 265 GQLVVNLPDK 274
GQLV + D+
Sbjct: 338 GQLVGRVEDR 347
>gi|338530141|ref|YP_004663475.1| radical SAM protein [Myxococcus fulvus HW-1]
gi|337256237|gb|AEI62397.1| radical SAM protein [Myxococcus fulvus HW-1]
Length = 359
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 161/273 (58%), Gaps = 21/273 (7%)
Query: 7 GFVEAVIMRYDSS------LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
GF +++R D L ++ G R+T+CIS+Q GC MGC FCATG MG
Sbjct: 80 GFTHKLLLRLDDGQTIETVLMRFKG-------RATVCISTQAGCAMGCVFCATGQMGLSR 132
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSP 114
+L+ GEIV Q++H +R+ +RNVV MGMGEPL+NY + AV ++ + + P
Sbjct: 133 HLTPGEIVGQVLHVNRILRASGEALRNVVLMGMGEPLHNYEHTMSAVDVLVDAMGLAMGP 192
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ IT+STVG+V I + + ++LAVSLH R ++PA R +PL++LM+A + Y
Sbjct: 193 RFITLSTVGVVPGIRRLADEERPIHLAVSLHGATDAERAALVPAGRRWPLDELMDACRYY 252
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
+ +++IF E+ ++ G ND +HAH LG+LL+ VN+IP NP S +
Sbjct: 253 SEKRKRRIFFEWTLISGRNDTAEHAHTLGQLLQGMDAHVNVIPLNPTVGYDGG-PSRPES 311
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V +FQ +L +Y + +TVR++ G DI CGQL
Sbjct: 312 VRAFQDVL-AAYEVPSTVRQRRGIDIDAGCGQL 343
>gi|429741487|ref|ZP_19275145.1| 23S rRNA methyltransferase [Porphyromonas catoniae F0037]
gi|429158593|gb|EKY01132.1| 23S rRNA methyltransferase [Porphyromonas catoniae F0037]
Length = 352
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 159/266 (59%), Gaps = 20/266 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++GG VEAV + P R+TLCISSQVGCKM C FC TG GFK NLS
Sbjct: 90 RSGGLVEAVYI--------------PEKDRATLCISSQVGCKMDCLFCMTGKQGFKGNLS 135
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQV--SPKRITVST 121
SGEI+ Q++ +++ N+V+MGMGEPL+N A ++ ++ +MT P+ + SPKRIT+ST
Sbjct: 136 SGEILNQVLSVEESASLTNIVYMGMGEPLDNAAHVLSSISVMTA-PWGLGWSPKRITLST 194
Query: 122 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181
VG+ + +F S+ +LAVSLH P + R +MPA PLE+ + ++E Q++
Sbjct: 195 VGVRKGLERFLSETT-CHLAVSLHNPFHEGRLALMPAEGGMPLEETLRMIREADFTGQRR 253
Query: 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241
+ EYI+ DGVND +HA +L +LL +NLIPF+ I V R S + F+
Sbjct: 254 VSFEYIVFDGVNDSREHAEELARLLRGIPCRINLIPFHQIPDVP-LRPLSAQGMELFKSY 312
Query: 242 LRGSYNIRTTVRKQMGQDISGACGQL 267
L S TT+R G+DIS ACG L
Sbjct: 313 LE-SRGYVTTIRTSRGEDISAACGML 337
>gi|407695029|ref|YP_006819817.1| ribosomal RNA large subunit methyltransferase N [Alcanivorax
dieselolei B5]
gi|407252367|gb|AFT69474.1| Ribosomal RNA large subunit methyltransferase N [Alcanivorax
dieselolei B5]
Length = 380
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/287 (42%), Positives = 161/287 (56%), Gaps = 30/287 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ GG VE V + P G R TLC+SSQVGC + C FC+TG GF+
Sbjct: 86 FEADGGGAVETVFI--------------PDGRRGTLCVSSQVGCAVDCGFCSTGKQGFQR 131
Query: 61 NLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVRIMT-GLPF 110
+L+S EI+ Q+ A R I NVV MGMGEP+ NY A++ A+RIM L +
Sbjct: 132 DLTSAEIIGQVWQAGRAFGPRRNLGEHPITNVVMMGMGEPMLNYDAVLTAMRIMKDDLGY 191
Query: 111 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+ KRIT+ST G+V I++ DL + LAVSLHAP ++R +++P R +PL +LM A
Sbjct: 192 GIGKKRITLSTSGVVPKIDQLSRDLD-VALAVSLHAPNDELRNELVPLNRKYPLAELMAA 250
Query: 171 LKEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 227
K Y N + I +EY+ML VND+ +HA QL KLL V VNLIPFNP
Sbjct: 251 CKRYSDNITHRHNTITMEYVMLRDVNDKPEHARQLVKLLNGIPVKVNLIPFNPFPHAGYE 310
Query: 228 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
R+ D + F K L + + TTVR G DI ACGQLV + D+
Sbjct: 311 RSRKKD-ILEFHKFL-NDHGLLTTVRTTRGDDIDAACGQLVGTVQDR 355
>gi|121998570|ref|YP_001003357.1| radical SAM protein [Halorhodospira halophila SL1]
gi|205829772|sp|A1WXZ3.1|RLMN_HALHL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121589975|gb|ABM62555.1| 23S rRNA m(2)A-2503 methyltransferase [Halorhodospira halophila
SL1]
Length = 359
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/261 (44%), Positives = 157/261 (60%), Gaps = 10/261 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----SNIRNVV 84
P R TLCISSQ GC MGC FCATG GF NL++ EIV Q VH +R I N+V
Sbjct: 103 PEPKRGTLCISSQAGCPMGCTFCATGEGGFSRNLTAAEIVGQ-VHVARQHLPEGAITNIV 161
Query: 85 FMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
FMGMGEPL N+ ++ A R+ T F +S +R+T+ST G+VHAI + + ++LAVS
Sbjct: 162 FMGMGEPLLNFDPVISASRVFTDDYGFVLSKRRVTISTSGVVHAIERMQR-VTDVSLAVS 220
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQL 202
LHAP ++R Q++P R PLE+L+ A Y + ++I EY+MLDGVND+++HA +L
Sbjct: 221 LHAPNNELRNQLVPLNRKNPLERLLPACHAYIAEKPHRRITWEYVMLDGVNDQDEHAREL 280
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
+ L VNLIPFNP RT D +V F L + + T+R+ G DI G
Sbjct: 281 LQRLRGIPSKVNLIPFNPYPGARYGRT-PDRQVRRFADRLL-EHGLTATIRETRGDDIDG 338
Query: 263 ACGQLVVNLPDKISAKSTPPV 283
ACGQLV + D ++K P
Sbjct: 339 ACGQLVGEIRDARASKVARPA 359
>gi|294790917|ref|ZP_06756075.1| radical SAM enzyme, Cfr family [Scardovia inopinata F0304]
gi|294458814|gb|EFG27167.1| radical SAM enzyme, Cfr family [Scardovia inopinata F0304]
Length = 424
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 173/294 (58%), Gaps = 32/294 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+M+Y + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 138 DGSRIESVLMKYPT--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSA 183
Query: 65 GEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQV 112
GEI+EQ+ +A+R S + NVVFMGMGE L NY A+++A+R ++ LP F +
Sbjct: 184 GEILEQVRYAARQARDGRLGQPSRLSNVVFMGMGEALGNYKAMMKAIRQISALPPDGFGI 243
Query: 113 SPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 172
S + ITVSTVGIV I + ++ + LAVSLHAP +R +++P + F + ++++A
Sbjct: 244 SARNITVSTVGIVPGIRRLMTEGIPVRLAVSLHAPSDSLRDELVPMNKRFAISQVLDAAH 303
Query: 173 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRT 229
+Y +++++ IEY ++ G+ND+ QHA L K L + V VN IP NPI S++
Sbjct: 304 DYYVATKRRVSIEYALMKGINDQAQHARLLAKRLNHYGDDWVHVNPIPLNPIEG-SRWTA 362
Query: 230 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV-NLPDKISAKSTPP 282
S + F IL + I T+R G DI GACGQL L + +S PP
Sbjct: 363 SKPEDEKRFLDILHQA-GIAATLRDTRGSDIDGACGQLAAKELIRQDQTESDPP 415
>gi|241764492|ref|ZP_04762513.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
gi|241366076|gb|EER60673.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
Length = 373
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/265 (45%), Positives = 162/265 (61%), Gaps = 19/265 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN---- 79
P R TLC+SSQ GC +GC FC+TG GF NL++GEIV QL A RL+
Sbjct: 96 PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQLWFAEHALRKRLATQSRV 155
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY ALV A+R+M + +S +R+TVST G+V +++ D P +
Sbjct: 156 ISNVVMMGMGEPLQNYTALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCP-V 214
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P R +PLE+L++A + Y +++ + I EY MLDGVND+ +
Sbjct: 215 ALAVSLHAPNDALRDNLVPLNRKYPLEELLDACRRYLEHAPRDFITFEYCMLDGVNDQVE 274
Query: 198 HAHQLGKLLETFQVV-----VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL L+ Q V NLIPFNP + R+ S +V+ F K+L + I TTV
Sbjct: 275 HARQLIALVNPAQGVPIRCKFNLIPFNPFPASGLLRSPS-AQVAMFAKVLSDA-GIVTTV 332
Query: 253 RKQMGQDISGACGQLVVNLPDKISA 277
RK G DI ACGQL ++ D+ A
Sbjct: 333 RKTRGDDIDAACGQLAGDVKDRTRA 357
>gi|319763716|ref|YP_004127653.1| radical sam enzyme, cfr family [Alicycliphilus denitrificans BC]
gi|317118277|gb|ADV00766.1| radical SAM enzyme, Cfr family [Alicycliphilus denitrificans BC]
Length = 374
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/263 (45%), Positives = 158/263 (60%), Gaps = 20/263 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLCISSQ GC +GC FC+TG GF NL++GEIV QL HA +
Sbjct: 96 PEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQLWHAEHVLRQRRGDGERV 155
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY+ALV A+RIM + +S +R+TVST G+V +++ D P +
Sbjct: 156 ISNVVMMGMGEPLQNYSALVPALRIMLDDHGYGLSRRRVTVSTSGVVPMMDRLGRDCP-V 214
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R ++P R +PL++L+ A + Y +++ + I EY MLDGVND+ +
Sbjct: 215 ALAVSLHAPNDELRDNLVPLNRKYPLQELLAACRRYLEHAPRDFITFEYCMLDGVNDQPE 274
Query: 198 HAHQLGKLLET------FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251
HA +L L+ NLIPFNP S R S VS+F K+L + I TT
Sbjct: 275 HARELIALVSRKAADGGVSCKFNLIPFNPF-PASGLRRSPAAAVSAFAKLLSDA-GIVTT 332
Query: 252 VRKQMGQDISGACGQLVVNLPDK 274
VRK G DI ACGQL ++ D+
Sbjct: 333 VRKTRGDDIDAACGQLAGDVKDR 355
>gi|189218104|ref|YP_001938746.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4]
gi|189184962|gb|ACD82147.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4]
Length = 314
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 158/243 (65%), Gaps = 5/243 (2%)
Query: 28 RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SNIRNVVF 85
R R TLC+S+QVGC +GC+FCA+G +GFK NLS GEIVEQ++ + + + ++VF
Sbjct: 37 RGSSERLTLCVSTQVGCALGCHFCASGLLGFKRNLSCGEIVEQVLLSESIVKQRVSHIVF 96
Query: 86 MGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
MGMGEPL NY L++++R+++ +SP++IT+ST GI I K + LAVSL
Sbjct: 97 MGMGEPLLNYDQLIKSIRLISSSWGIGISPRKITISTSGIAPRIRKLALETLPFRLAVSL 156
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
HA ++R +IMP +PL +L+ + +E+ +QKI +EYI++ G+ND + A +L +
Sbjct: 157 HATTDELRSKIMPINSKYPLSELIKSCEEFCSRRKQKITLEYILISGLNDRREDAERLAR 216
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
+ + + VNLIP+NPI ++ +++S F+ + + ++ ++RK+ G+DI GAC
Sbjct: 217 IATSLRAKVNLIPYNPIERLAWKSPDQKEQLSFFRWL--KNKAVQVSIRKERGRDIDGAC 274
Query: 265 GQL 267
GQL
Sbjct: 275 GQL 277
>gi|288941010|ref|YP_003443250.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
gi|288896382|gb|ADC62218.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
Length = 365
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 159/250 (63%), Gaps = 7/250 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SNIRNVVFM 86
P G RST+C+SSQVGC + C FCAT GF NLS EI+ Q+ HA+R + NVV M
Sbjct: 101 PEGKRSTICVSSQVGCALECAFCATARQGFNRNLSVAEIIGQVWHAARQLGAAPTNVVMM 160
Query: 87 GMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GMGEPL N+ A V+A+ +M L + ++ +R+T+ST GIV I + ++ ++LAVSLH
Sbjct: 161 GMGEPLANFEAAVKAMDVMQDDLAYMLAKQRVTLSTSGIVPNIYRLR-EVSDVSLAVSLH 219
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
AP ++R +++P R +PL +L+ A K Y + ++KI EY+MLDG+ND HA QL +
Sbjct: 220 APNDELRDELVPINRKYPLAELIPACKHYVAGDKRRKITWEYVMLDGINDSPAHAKQLIR 279
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LLE VNLIPFNP S F TS D+V +F++ L S I RK G +I+ AC
Sbjct: 280 LLEGVPSKVNLIPFNPFTG-SDFGTSPPDRVETFRERLARS-GIFAMTRKTRGDEIAAAC 337
Query: 265 GQLVVNLPDK 274
GQLV + D+
Sbjct: 338 GQLVGRVQDR 347
>gi|284045197|ref|YP_003395537.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684]
gi|283949418|gb|ADB52162.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684]
Length = 329
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/268 (39%), Positives = 160/268 (59%), Gaps = 20/268 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+G VEAV+MRY R +LC+SSQ GC + C FCATGTM F NL+
Sbjct: 77 HDGRAVEAVLMRYKDG-------------RRSLCLSSQSGCPLTCTFCATGTMKFGRNLT 123
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
+ EI++Q +H R+ + + VFMGMGEP+ N ++ A R + + ++ +R +STVG
Sbjct: 124 ASEILDQALHFRRIEEVDHCVFMGMGEPMMNLDHVLAACRALPSI--GITHRRTAISTVG 181
Query: 124 IVHAINKF-HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 182
+ I + S++P + LA+SLHAP + +R QIMP +PL ++ A +++ + ++ +
Sbjct: 182 WIPGIERLTDSEMP-IRLALSLHAPDEALRSQIMPVNDRYPLRDVLRACRDFYEKKRRMV 240
Query: 183 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 242
FIEY+ML GVND A QL +LLE + VNLIP+NP S+ + SS + + +F+ +L
Sbjct: 241 FIEYVMLGGVNDGYAQALQLARLLEPWMFKVNLIPYNPTDSI--YDGSSREAIETFRAVL 298
Query: 243 RGSYNIRTTVRKQMGQDISGACGQLVVN 270
+ I TVR G+DI ACGQL V
Sbjct: 299 E-EHGISATVRLTRGRDIDAACGQLAVK 325
>gi|395003902|ref|ZP_10387999.1| 23S rRNA methyltransferase [Acidovorax sp. CF316]
gi|394318186|gb|EJE54646.1| 23S rRNA methyltransferase [Acidovorax sp. CF316]
Length = 396
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/265 (46%), Positives = 161/265 (60%), Gaps = 19/265 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN---- 79
P R TLCISSQ GC +GC FC+TG GF NL++GEIV QL A RL
Sbjct: 119 PEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQLWFAEHALRKRLGKDERV 178
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY+ALV A+R+M + +S +R+TVST G+V I++ D P +
Sbjct: 179 ISNVVMMGMGEPLQNYSALVPALRVMLDDHAYGLSRRRVTVSTSGVVPMIDRLAQDCP-V 237
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P R +P+E+L+ A Y +++ + I EY MLDGVND+ +
Sbjct: 238 ALAVSLHAPNDPLRDNLVPLNRKYPIEELLAACNRYLEHAPRDFITFEYCMLDGVNDQIE 297
Query: 198 HAHQLGKLL-----ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL +L+ E + NLIPFNP + R SS +V +F K+L + I TTV
Sbjct: 298 HARQLIELVKPARGEGVRCKFNLIPFNPFPASGLLR-SSHAQVQAFGKLLSDA-GIVTTV 355
Query: 253 RKQMGQDISGACGQLVVNLPDKISA 277
RK G DI ACGQL ++ D+ A
Sbjct: 356 RKTRGDDIDAACGQLAGDVKDRTKA 380
>gi|121607087|ref|YP_994894.1| radical SAM protein [Verminephrobacter eiseniae EF01-2]
gi|205829923|sp|A1WE19.1|RLMN_VEREI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121551727|gb|ABM55876.1| radical SAM enzyme, Cfr family [Verminephrobacter eiseniae EF01-2]
Length = 391
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 161/259 (62%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN---- 79
P R TLC+SSQ GC +GC FC+TG GF NLSSGEI+ QL A RL
Sbjct: 97 PEDERGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSSGEIIAQLWFAEHALRRRLKTEDRV 156
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I N+V MGMGEPL N AAL+ A+R+M + +S +R+TVST G+V I++ D P +
Sbjct: 157 ISNLVMMGMGEPLQNLAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLARDCP-V 215
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R Q++P R +P+++L+ A K Y ++ + I EY MLDGVND+
Sbjct: 216 ALAVSLHAPNDALRDQLVPLNRKYPIDELLQACKRYLAHAPRDFITFEYCMLDGVNDQIG 275
Query: 198 HAHQLGKLL--ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HA QL +L+ + NLIPFNP + R S+ D++ +F ++L G+ I TTVRK
Sbjct: 276 HARQLVELVGRAAIRCKFNLIPFNPFPASGLLR-SAHDQILAFAQVL-GAAGIVTTVRKT 333
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI+ ACGQL ++ D+
Sbjct: 334 RGDDIAAACGQLAGDVRDR 352
>gi|330824021|ref|YP_004387324.1| ribosomal RNA large subunit methyltransferase N [Alicycliphilus
denitrificans K601]
gi|329309393|gb|AEB83808.1| Ribosomal RNA large subunit methyltransferase N [Alicycliphilus
denitrificans K601]
Length = 374
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 119/263 (45%), Positives = 158/263 (60%), Gaps = 20/263 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLCISSQ GC +GC FC+TG GF NL++GEIV QL HA +
Sbjct: 96 PEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQLWHAEHVLRQRRGDGERV 155
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY+ALV A+RIM + +S +R+TVST G+V +++ D P +
Sbjct: 156 ISNVVMMGMGEPLQNYSALVPALRIMLDDHGYGLSRRRVTVSTSGVVPMMDRLGRDCP-V 214
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R ++P R +PL++L+ A + Y +++ + I EY MLDGVND+ +
Sbjct: 215 ALAVSLHAPNDELRDNLVPLNRKYPLQELLAACRRYLEHAPRDFITFEYCMLDGVNDQPE 274
Query: 198 HAHQLGKLLET------FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251
HA +L L+ NLIPFNP S R S VS+F K+L + I TT
Sbjct: 275 HARELIALVSRKAADGGVSCKFNLIPFNPF-PASGLRRSPAVAVSAFAKLLSDA-GIVTT 332
Query: 252 VRKQMGQDISGACGQLVVNLPDK 274
VRK G DI ACGQL ++ D+
Sbjct: 333 VRKTRGDDIDAACGQLAGDVKDR 355
>gi|227547301|ref|ZP_03977350.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp.
longum ATCC 55813]
gi|227212260|gb|EEI80156.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 389
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/281 (39%), Positives = 168/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 122 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMST 167
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 168 GEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFG 227
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F +++++A
Sbjct: 228 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAA 287
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 288 HDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWT 346
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F +IL S I T+R GQDI GACGQL
Sbjct: 347 ASKPEDEQRFLEILHRS-GITATLRDTRGQDIDGACGQLAA 386
>gi|344343058|ref|ZP_08773928.1| Ribosomal RNA large subunit methyltransferase N [Marichromatium
purpuratum 984]
gi|343805610|gb|EGV23506.1| Ribosomal RNA large subunit methyltransferase N [Marichromatium
purpuratum 984]
Length = 364
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 113/250 (45%), Positives = 164/250 (65%), Gaps = 7/250 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR--LSNIRNVVFM 86
P G RST+C+SSQVGC + C FCAT GF NL+ EI+ Q+ HA+R ++ NVV M
Sbjct: 101 PEGRRSTICVSSQVGCALDCRFCATAKQGFNRNLAVSEIIAQVWHATRHLQASPTNVVMM 160
Query: 87 GMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GMGEPL N+ A+V+A+ +M L + ++ +R+TVSTVGIV AI + ++ ++LAVSLH
Sbjct: 161 GMGEPLANFDAVVKAMAVMQDDLAYMLAKQRVTVSTVGIVPAIERLR-EVSDVSLAVSLH 219
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
AP +R +++P R +PL +L+ A + Y + ++K+ EYIM+ G+ND HA QL +
Sbjct: 220 APNDALRNELVPINRKYPLAELIPACRRYVAADKRRKVTWEYIMIAGLNDSIAHAKQLIR 279
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LLE +NLIPFNP V + TS ++V +F++ L S I TT RK G++I+ AC
Sbjct: 280 LLEGTPSKINLIPFNPFPGVD-YATSPPEQVEAFRQRLIRSGLIATT-RKTRGEEIAAAC 337
Query: 265 GQLVVNLPDK 274
GQLV + D+
Sbjct: 338 GQLVGRVQDR 347
>gi|282857182|ref|ZP_06266426.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455]
gi|282584968|gb|EFB90292.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455]
Length = 365
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 116/270 (42%), Positives = 158/270 (58%), Gaps = 27/270 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +VE+V+M + G T CISSQVGC + C FCATG GFK NLS+
Sbjct: 110 DGEYVESVLMDH--------------GNHYTACISSQVGCPLRCEFCATGQQGFKRNLSA 155
Query: 65 GEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRI-----MTGLPFQVSPKRI 117
GEIV + + +I NVVFMGMGEPL NY +V+AVR+ M GL S + +
Sbjct: 156 GEIVSHFAAMESDVGHDINNVVFMGMGEPLLNYENVVKAVRMFLEPKMRGL----SVRHV 211
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+ST GI I + + + L +SLHAP ++R +IMP FPL + +AL+ +QK
Sbjct: 212 TISTSGIPEGIRRLADEGLDIYLCLSLHAPNNELRSRIMPVNERFPLGAVFSALEYWQKK 271
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
+ ++ IEY+ML VND A++L L QV VNLIP+NP+ +QF S +++
Sbjct: 272 TGVRLTIEYVMLKNVNDTPDCAYELATLFSNLQVYVNLIPYNPVAG-TQFARPSASRIAP 330
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQL 267
F KIL+G N+ VRK+ G DI ACGQL
Sbjct: 331 FMKILKG-LNVECEVRKEHGADIDAACGQL 359
>gi|417942138|ref|ZP_12585415.1| Ribosomal RNA large subunit methyltransferase N [Bifidobacterium
breve CECT 7263]
gi|376167523|gb|EHS86359.1| Ribosomal RNA large subunit methyltransferase N [Bifidobacterium
breve CECT 7263]
Length = 390
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 168/282 (59%), Gaps = 32/282 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 123 DGSLIESVLMRYPT--------------RATLCISSQVGCGMGCPFCATGKLGLTRNMST 168
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEIVEQ+ A+++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 169 GEIVEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFG 228
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F ++++A
Sbjct: 229 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAA 288
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 289 HDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDDWAHVNPIPLNPIEG-SKWT 347
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
S + F +IL + +I T+R GQDI GACGQL
Sbjct: 348 ASKPEDEKQFLEILHRA-SITATLRDTRGQDIDGACGQLAAK 388
>gi|374849841|dbj|BAL52845.1| hypothetical conserved protein [uncultured gamma proteobacterium]
Length = 366
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 113/257 (43%), Positives = 161/257 (62%), Gaps = 13/257 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR--NVVFM 86
P R TLC+SSQVGC +GC FCAT GF NLS+ EI+ Q+ +A R + R NVV M
Sbjct: 102 PEERRGTLCVSSQVGCALGCAFCATARQGFSRNLSAAEIIGQVWYAFRQLDCRITNVVLM 161
Query: 87 GMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GMGEPL N+ A+V+A +M L + ++ +R+TVST G+ AI + +++ ++LAVSLH
Sbjct: 162 GMGEPLLNFDAVVDAAELMMDDLAYGLAKRRVTVSTAGLAPAIERL-AEISDVSLAVSLH 220
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQL 202
A ++R ++P R +PL++L+ A + + + +Q KI EY+ML GVND + A +L
Sbjct: 221 ATTDELRDLLVPINRKYPLQRLLAACRRFAGSERQKGRKITFEYVMLQGVNDADADAKRL 280
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
KLL +NLIPFNP + FR S + + FQ IL S TTVR+ G+DI+
Sbjct: 281 AKLLSQVPAKINLIPFNPFPG-APFRCSPPETILRFQSILADS-GFLTTVRRTRGEDIAA 338
Query: 263 ACGQLVVNLPDKISAKS 279
ACGQLV K++A+S
Sbjct: 339 ACGQLV----GKVAARS 351
>gi|229817667|ref|ZP_04447949.1| hypothetical protein BIFANG_02938 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785456|gb|EEP21570.1| hypothetical protein BIFANG_02938 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 395
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 164/282 (58%), Gaps = 32/282 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + RSTLCISSQVGC MGC FCATG +G N+S+
Sbjct: 128 DGSHIESVLMRYPT--------------RSTLCISSQVGCGMGCPFCATGQLGLTRNMSA 173
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+R+ + N+VFMGMGEP+ NY +++ AVR ++ LP F
Sbjct: 174 GEILEQVRVAARMMQDGEVAGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISALPPQGFG 233
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K + + LAVSLHAP ++R +++P + F +++A
Sbjct: 234 ISARNITVSTVGVVPGIRKLTEEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTAVLDAA 293
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y +++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 294 HDYWLATKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDDWAHVNPIPLNPIEG-SKWT 352
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
S + F IL + I T+R GQDI GACGQL
Sbjct: 353 ASKPEDEKRFLDILHAA-GITATLRDTRGQDIDGACGQLAAK 393
>gi|345872018|ref|ZP_08823958.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodococcus
drewsii AZ1]
gi|343919552|gb|EGV30298.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodococcus
drewsii AZ1]
Length = 365
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 159/250 (63%), Gaps = 7/250 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SNIRNVVFM 86
P G RST+C+SSQVGC + C FCAT GF NLS EIV Q+ HA+R + NVV M
Sbjct: 101 PEGKRSTICVSSQVGCALECAFCATARQGFNRNLSVAEIVGQVWHAARQLGTAPTNVVMM 160
Query: 87 GMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GMGEPL N+ A V+A+ IM L + ++ +R+T+ST GIV I + ++ ++LAVSLH
Sbjct: 161 GMGEPLANFEAAVKAMDIMQDDLAYMLAKQRVTLSTSGIVPNIYRLR-EVSDVSLAVSLH 219
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGK 204
AP ++R Q++P R +PL +L+ A K Y N + +K+ EY+MLDGVND HA QL +
Sbjct: 220 APNDELRDQLVPINRKYPLSELIPACKAYIANDKRRKVTWEYVMLDGVNDSIAHAKQLIR 279
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LLE +NLIPFNP + F TS+ +++ +F+ L + I RK G +IS AC
Sbjct: 280 LLEGVPSKLNLIPFNPFAG-NDFGTSTPERIEAFRVRLTRA-GIFAMTRKTRGDEISAAC 337
Query: 265 GQLVVNLPDK 274
GQLV + D+
Sbjct: 338 GQLVGRVEDR 347
>gi|291456892|ref|ZP_06596282.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|384196900|ref|YP_005582644.1| 2-vinyl bacteriochlorophyllide hydratase [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|291382169|gb|EFE89687.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|333110216|gb|AEF27232.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|339479311|gb|ABE95779.1| Radical SAM family enzyme [Bifidobacterium breve UCC2003]
Length = 389
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/281 (39%), Positives = 167/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 122 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMST 167
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEIVEQ+ A+++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 168 GEIVEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFG 227
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F ++++A
Sbjct: 228 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAA 287
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 288 HDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWT 346
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F +IL + I T+R GQDI GACGQL
Sbjct: 347 ASKPEDEKQFLEILHRA-GITATLRDTRGQDIDGACGQLAA 386
>gi|374386248|ref|ZP_09643748.1| 23S rRNA methyltransferase [Odoribacter laneus YIT 12061]
gi|373224177|gb|EHP46517.1| 23S rRNA methyltransferase [Odoribacter laneus YIT 12061]
Length = 345
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 153/251 (60%), Gaps = 8/251 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNV 83
PG + T+C+SSQ GC++GC FCATGT+GFK NL+ GEIV+Q+ HA + S++ N+
Sbjct: 97 PGNEKYTVCVSSQAGCQLGCRFCATGTLGFKRNLTVGEIVDQVFHARKEAECSSSSLSNI 156
Query: 84 VFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 142
VFMGMGEPL NY ++ A+ RI + +SP RITVST GI I + D NLAV
Sbjct: 157 VFMGMGEPLLNYDHVLSAIQRITSEKGLGMSPSRITVSTAGIPAKIRQLADDRVRFNLAV 216
Query: 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 202
SLH+ ++VR Q+MP RA+PL +L +L + + + + EY++L +ND + A L
Sbjct: 217 SLHSAKENVRSQLMPVNRAYPLAELAASLIYFVEKTGTRPTFEYLLLHHINDSLEDARAL 276
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
+ F V +N+I +NP+ S+FR S D + +F + L N+ +RK G+DI
Sbjct: 277 ADYCKQFPVKINIIEYNPVEG-SEFRHSPDKQRDAFVQFLENR-NMVVHIRKSKGKDIDA 334
Query: 263 ACGQLVVNLPD 273
ACGQL D
Sbjct: 335 ACGQLANKRKD 345
>gi|406881559|gb|EKD29588.1| hypothetical protein ACD_78C00346G0001, partial [uncultured
bacterium (gcode 4)]
Length = 264
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 116/273 (42%), Positives = 155/273 (56%), Gaps = 22/273 (8%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G F+EAVIMR+ S R+TLC+S QVGC M C+FCATG +GF NL
Sbjct: 1 GKFLEAVIMRHLSG-------------RNTLCVSCQVGCPMACSFCATGKLGFTRNLDFT 47
Query: 66 EIVEQL---VH--ASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITV 119
EIVEQ+ VH A +RNVV+MGMGEP NY + ++ I + +S +RITV
Sbjct: 48 EIVEQMMIAVHHLAKEDKRLRNVVYMGMGEPFLNYENVRHSIEIACSQKKLDLSSRRITV 107
Query: 120 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 179
ST GI+ I K D P ++LA+SLHAP + R IMP + +PL LM AL Y +
Sbjct: 108 STCGIIPGIQKIAEDFPQVSLAISLHAPTDEARRVIMPVEQTYPLANLMEALDAYVVKTN 167
Query: 180 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP--IGSVSQFRTSSDDKVSS 237
++IF EYIM++G+ D ++A L LL VN IP+NP S S+ +S +
Sbjct: 168 KRIFYEYIMINGLTDRPEYAKALADLLHGRLAHVNFIPYNPGEGSSDSKMLPTSKVMIKK 227
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
FQ L + + +T+R MG DI ACGQL +
Sbjct: 228 FQDALELA-GVPSTIRHTMGDDIDAACGQLALK 259
>gi|408372889|ref|ZP_11170588.1| Fe-S-cluster redox protein [Alcanivorax hongdengensis A-11-3]
gi|407767241|gb|EKF75679.1| Fe-S-cluster redox protein [Alcanivorax hongdengensis A-11-3]
Length = 381
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 157/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P G R TLC+SSQVGC + C+FC+TG GF+ +++S EI+ Q+ ASR
Sbjct: 100 PDGRRGTLCVSSQVGCAVDCSFCSTGKQGFQRDMTSAEIIGQVWQASRAFGPRRNLGEHP 159
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY ++ A+RIM L + + KRIT+ST G++ +++ DL +
Sbjct: 160 ITNVVMMGMGEPLLNYDNVLTAMRIMKDDLGYGIGKKRITLSTSGVIPKMDQLSDDL-DV 218
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDE 195
LAVSLHAP ++R +++P R +PL++LM A + Y KN + I +EY+ML VND+
Sbjct: 219 ALAVSLHAPNDELRNELVPLNRKYPLKELMAACRRYSKNITHRHNTITMEYVMLRDVNDK 278
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA QL KLL V +NLIPFNP R+ D + F K L + + TTVR
Sbjct: 279 PEHARQLVKLLNGIPVKINLIPFNPFPHAGYERSRKSD-ILEFHKYLNDN-GLLTTVRTT 336
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV + D+
Sbjct: 337 RGDDIDAACGQLVGQVQDR 355
>gi|337286227|ref|YP_004625700.1| radical SAM enzyme, Cfr family [Thermodesulfatator indicus DSM
15286]
gi|335359055|gb|AEH44736.1| radical SAM enzyme, Cfr family [Thermodesulfatator indicus DSM
15286]
Length = 349
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/253 (43%), Positives = 150/253 (59%), Gaps = 13/253 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P TLC+SSQVGC MGC FC T MGF+ NLS EI Q++ A +
Sbjct: 98 PEEDHYTLCVSSQVGCAMGCAFCLTAKMGFRRNLSPHEITAQVLRAKEVLIREGLIKEKP 157
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+RN+VFMGMGEPL NY ++ A++I+ F S +R+TVSTVG++ + K D+
Sbjct: 158 LRNIVFMGMGEPLANYENILRALKILLDEKGFNFSRRRVTVSTVGLIPQMEKLGKDITA- 216
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQH 198
LA+SLHA +D R Q+MP + +PL++L+ A + Y +I EY+ML GVND
Sbjct: 217 KLAISLHAADEDKRTQLMPINKRYPLKELIPACRRYPLPKGWRITFEYLMLKGVNDSSHD 276
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
AH+L KLL+ +NLIPFN ++ F+ S ++ + FQ IL SY T+RK G+
Sbjct: 277 AHKLAKLLKGVPAKINLIPFNEHPALP-FKCSDEETIFRFQGILL-SYGYVATIRKSKGR 334
Query: 259 DISGACGQLVVNL 271
DIS ACGQL L
Sbjct: 335 DISAACGQLATRL 347
>gi|312132647|ref|YP_003999986.1| fe-s-cluster redox enzyme [Bifidobacterium longum subsp. longum
BBMN68]
gi|419849125|ref|ZP_14372188.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 35B]
gi|419852089|ref|ZP_14374986.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 2-2B]
gi|311773598|gb|ADQ03086.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum
subsp. longum BBMN68]
gi|386411863|gb|EIJ26573.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 2-2B]
gi|386412749|gb|EIJ27399.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 35B]
Length = 389
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 168/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 122 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMST 167
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 168 GEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFG 227
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F +++++A
Sbjct: 228 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAA 287
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 288 HDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWT 346
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F +IL + I T+R GQDI GACGQL
Sbjct: 347 ASKPEDEQRFLEILHRA-GITATLRDTRGQDIDGACGQLAA 386
>gi|392950836|ref|ZP_10316391.1| hypothetical protein WQQ_04630 [Hydrocarboniphaga effusa AP103]
gi|391859798|gb|EIT70326.1| hypothetical protein WQQ_04630 [Hydrocarboniphaga effusa AP103]
Length = 441
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 151/247 (61%), Gaps = 14/247 (5%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVV 84
R TLCISSQVGC M C+FC+T G NL++ E++ Q+ A++ I NVV
Sbjct: 171 RGTLCISSQVGCAMDCSFCSTAQQGLNRNLTTAEVIAQVWFAAKTLGGDFQNERVISNVV 230
Query: 85 FMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
FMGMGEPL NY ++ A+ I+ F +S +R+TVST G+V +++ +D LAVS
Sbjct: 231 FMGMGEPLANYGQVMPAIGILQDDFGFGLSKRRVTVSTSGLVPFMDRLRADC-DTALAVS 289
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI--EYIMLDGVNDEEQHAHQ 201
LHAP ++R +++P R +P+ +LM A + Y ++K+ I EY+MLDGVND +HA Q
Sbjct: 290 LHAPNDELRNRLVPINRKYPIAELMAACRRYTAGKERKMHIVYEYVMLDGVNDAPEHARQ 349
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L KLL VNLIPFNP +Q++ S + + F ILR + I TT R+ G DI
Sbjct: 350 LAKLLAGMPAKVNLIPFNPFPE-AQYKRSKPEAIKRFADILREKH-IMTTTRRTRGDDID 407
Query: 262 GACGQLV 268
ACGQLV
Sbjct: 408 AACGQLV 414
>gi|386866950|ref|YP_006279944.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. animalis ATCC 25527]
gi|385701033|gb|AFI62981.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. animalis ATCC 25527]
Length = 398
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 166/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 129 DGSKIESVLMRYPN--------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMST 174
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+ + + NVVFMGMGEP+ NY A+V AVR ++ +P F
Sbjct: 175 GEILEQVRIAAAMMERGEVAGGPGRLSNVVFMGMGEPMGNYRAIVSAVRQISAMPPEGFG 234
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I + + + LAVSLHAP +R +++P R F ++++++A
Sbjct: 235 ISARNITVSTVGVVPGIRRLAQEGMPVRLAVSLHAPNNALRDELVPMNRRFNVDEVLDAA 294
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+E HA QL L + VN IP NPI S++
Sbjct: 295 HDYYLASKRRVSIEYALMRGINDQEVHARQLANRLNHYGDNWAHVNPIPLNPIEG-SKWT 353
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F +IL + I T+R GQDI GACGQL
Sbjct: 354 ASKPEDERRFLEILHNA-GITATLRDTRGQDIDGACGQLAA 393
>gi|225352146|ref|ZP_03743169.1| hypothetical protein BIFPSEUDO_03761 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157393|gb|EEG70732.1| hypothetical protein BIFPSEUDO_03761 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 393
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/285 (39%), Positives = 167/285 (58%), Gaps = 32/285 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 125 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMSA 170
Query: 65 GEIVEQLVHASR----------LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A++ L + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 171 GEILEQVRVAAKAMHDGEVAGGLGRLSNIVFMGMGEPMGNYKSVLSAVRQISAMPPEGFG 230
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F ++++A
Sbjct: 231 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAA 290
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 291 HDYYLASKRRVSIEYALMRGINDQAEHAKLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWT 349
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 273
S + F IL + I T+R GQDI GACGQL D
Sbjct: 350 ASKPEDEQQFLDILHKA-GITATLRDTRGQDIDGACGQLAAKEQD 393
>gi|219683780|ref|YP_002470163.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis AD011]
gi|387820682|ref|YP_006300725.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis B420]
gi|387822356|ref|YP_006302305.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis Bi-07]
gi|219621430|gb|ACL29587.1| radical SAM enzyme, Cfr family protein [Bifidobacterium animalis
subsp. lactis AD011]
gi|386653383|gb|AFJ16513.1| Ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis B420]
gi|386654964|gb|AFJ18093.1| Ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis Bi-07]
Length = 393
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 166/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 124 DGSKIESVLMRYPN--------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMST 169
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+ + + NVVFMGMGEP+ NY A+V AVR ++ +P F
Sbjct: 170 GEILEQVRIAAAMMERGEVAGGPGRLSNVVFMGMGEPMGNYRAIVSAVRQISAMPPEGFG 229
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I + + + LAVSLHAP +R +++P R F ++++++A
Sbjct: 230 ISARNITVSTVGVVPGIRRLAQEGMPVRLAVSLHAPNNALRDELVPMNRRFNVDEVLDAA 289
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+E HA QL L + VN IP NPI S++
Sbjct: 290 HDYYLASKRRVSIEYALMRGINDQEIHARQLANRLNHYGDNWAHVNPIPLNPIEG-SKWT 348
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F +IL + I T+R GQDI GACGQL
Sbjct: 349 ASKPEDERRFLEILHNA-GITATLRDTRGQDIDGACGQLAA 388
>gi|373856266|ref|ZP_09599011.1| radical SAM enzyme, Cfr family [Bacillus sp. 1NLA3E]
gi|372454103|gb|EHP27569.1| radical SAM enzyme, Cfr family [Bacillus sp. 1NLA3E]
Length = 348
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 163/272 (59%), Gaps = 23/272 (8%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
Q+G +E V+MR+ L ++C+++QVGC +GC+FCA+G + +LS
Sbjct: 86 QDGNLIETVLMRHKYGL--------------SVCVTTQVGCNIGCSFCASGLLVKNRDLS 131
Query: 64 SGEIVEQLV-------HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPK 115
SGEIVEQ++ H + + ++V MG+GEP +N+ LV ++I+ +++ +
Sbjct: 132 SGEIVEQIMKVQLHLDHLEKGEKVSHIVVMGIGEPFDNFENLVNFLKIIIDQKGLEIAAR 191
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
ITVST G+ I F +NLA+SLHAP ++R +IM RA+PLE+LM A+ Y
Sbjct: 192 HITVSTSGLAEKIYDFTDTKLPVNLAISLHAPNNELRSRIMKINRAYPLEELMKAVDYYL 251
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235
+N+ ++I EYI+L VND + A QL L+E + VNLIP+NP+G SQ++ S ++ V
Sbjct: 252 ENTNRRITFEYILLKDVNDHREEAQQLANLIENKKSYVNLIPYNPVGEHSQYQRSDEESV 311
Query: 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+F L+ + + +R++ G DI ACGQL
Sbjct: 312 LAFYDTLKKN-GVNCVIRQEHGTDIDAACGQL 342
>gi|183601687|ref|ZP_02963057.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp.
lactis HN019]
gi|241190814|ref|YP_002968208.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|241196220|ref|YP_002969775.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|384193808|ref|YP_005579554.1| radical SAM enzyme, Cfr family [Bifidobacterium animalis subsp.
lactis BLC1]
gi|384195372|ref|YP_005581117.1| hypothetical protein BalV_0750 [Bifidobacterium animalis subsp.
lactis V9]
gi|423679341|ref|ZP_17654217.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis BS 01]
gi|183219293|gb|EDT89934.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp.
lactis HN019]
gi|240249206|gb|ACS46146.1| hypothetical protein Balac_0778 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250774|gb|ACS47713.1| hypothetical protein Balat_0778 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|295793803|gb|ADG33338.1| hypothetical protein BalV_0750 [Bifidobacterium animalis subsp.
lactis V9]
gi|345282667|gb|AEN76521.1| radical SAM enzyme, Cfr family [Bifidobacterium animalis subsp.
lactis BLC1]
gi|366041452|gb|EHN17947.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis BS 01]
Length = 398
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 166/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 129 DGSKIESVLMRYPN--------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMST 174
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+ + + NVVFMGMGEP+ NY A+V AVR ++ +P F
Sbjct: 175 GEILEQVRIAAAMMERGEVAGGPGRLSNVVFMGMGEPMGNYRAIVSAVRQISAMPPEGFG 234
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I + + + LAVSLHAP +R +++P R F ++++++A
Sbjct: 235 ISARNITVSTVGVVPGIRRLAQEGMPVRLAVSLHAPNNALRDELVPMNRRFNVDEVLDAA 294
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+E HA QL L + VN IP NPI S++
Sbjct: 295 HDYYLASKRRVSIEYALMRGINDQEIHARQLANRLNHYGDNWAHVNPIPLNPIEG-SKWT 353
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F +IL + I T+R GQDI GACGQL
Sbjct: 354 ASKPEDERRFLEILHNA-GITATLRDTRGQDIDGACGQLAA 393
>gi|23335166|ref|ZP_00120404.1| COG0820: Predicted Fe-S-cluster redox enzyme [Bifidobacterium
longum DJO10A]
gi|189439272|ref|YP_001954353.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
longum DJO10A]
gi|322689304|ref|YP_004209038.1| hypothetical protein BLIF_1118 [Bifidobacterium longum subsp.
infantis 157F]
gi|189427707|gb|ACD97855.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum
DJO10A]
gi|320460640|dbj|BAJ71260.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 389
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 167/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 122 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMST 167
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 168 GEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFG 227
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F ++++A
Sbjct: 228 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTAQVLDAA 287
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 288 HDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWT 346
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F +IL + I T+R GQDI GACGQL
Sbjct: 347 ASKPEDEQRFLEILHRA-GITATLRDTRGQDIDGACGQLAA 386
>gi|327398526|ref|YP_004339395.1| ribosomal RNA large subunit methyltransferase N [Hippea maritima
DSM 10411]
gi|327181155|gb|AEA33336.1| Ribosomal RNA large subunit methyltransferase N [Hippea maritima
DSM 10411]
Length = 342
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 156/241 (64%), Gaps = 9/241 (3%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR--NVVFMGMGE 90
R T+C+S+Q GC+MGC FCATG MGFK NLS+ EIV Q+V+ +++N++ NVV+MGMGE
Sbjct: 100 RFTICVSTQAGCRMGCKFCATGRMGFKRNLSTSEIVSQVVYILKVNNLKTANVVYMGMGE 159
Query: 91 PLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
PL+NY V++++I++ GL +S +RIT+ST GI +NK DLP +N+A+SLH+
Sbjct: 160 PLDNYENTVKSIKILSDDRGL--SISKRRITLSTAGITPGVNKLKKDLPNINMALSLHSI 217
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
+ R IMP +P+++++N LK++ +++I EY+M+ G+ND + L K++
Sbjct: 218 ISKKRSMIMPINDTYPIDEVLNELKDFPMPRRKRITFEYVMIKGINDTKDDLKALLKVMS 277
Query: 208 TFQVVVNLIPFNPIGSV-SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
F+ +N+IP N + ++F + D++ F LR + T+RK G I+ ACG
Sbjct: 278 NFKCKLNIIPLNKHDLLGTKFEPTPMDRIEEFADYLRNK-GMFVTIRKSKGSSINAACGM 336
Query: 267 L 267
L
Sbjct: 337 L 337
>gi|213691945|ref|YP_002322531.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
longum subsp. infantis ATCC 15697 = JCM 1222]
gi|384199100|ref|YP_005584843.1| hypothetical protein [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|213523406|gb|ACJ52153.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|320458052|dbj|BAJ68673.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 389
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 167/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 122 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMST 167
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 168 GEIIEQVRVAAKMMRDGEVAGGAGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFG 227
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F ++++A
Sbjct: 228 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAA 287
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 288 HDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWT 346
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F +IL + I T+R GQDI GACGQL
Sbjct: 347 ASKPEDEQRFLEILHRA-GITATLRDTRGQDIDGACGQLAA 386
>gi|119025804|ref|YP_909649.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
adolescentis ATCC 15703]
gi|154487364|ref|ZP_02028771.1| hypothetical protein BIFADO_01214 [Bifidobacterium adolescentis
L2-32]
gi|205829670|sp|A1A1I4.1|RLMN_BIFAA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|118765388|dbj|BAF39567.1| hypothetical protein BAD_0786 [Bifidobacterium adolescentis ATCC
15703]
gi|154083882|gb|EDN82927.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium adolescentis
L2-32]
Length = 386
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/285 (39%), Positives = 167/285 (58%), Gaps = 32/285 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 118 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMSA 163
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEIVEQ+ A++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 164 GEIVEQVRVAAKAMRDGEVAGGSGRLSNIVFMGMGEPMGNYKSVLSAVRQISSMPPEGFG 223
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K + + LAVSLHAP ++R +++P + F +++++A
Sbjct: 224 ISARNITVSTVGVVPGIRKLAEEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAA 283
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 284 HDYYLASKRRVSIEYALMRGINDQAEHAKLLAKRLNHYGDDWAHVNPIPLNPIEG-SKWT 342
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 273
S + F +IL + I T+R GQDI GACGQL D
Sbjct: 343 ASKPEDERRFLEILHNA-GITATLRDTRGQDIDGACGQLAAKERD 386
>gi|384191061|ref|YP_005576809.1| radical SAM protein [Bifidobacterium animalis subsp. lactis BB-12]
gi|384192206|ref|YP_005577953.1| Methyltransferase [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
gi|289178553|gb|ADC85799.1| Radical SAM family enzyme [Bifidobacterium animalis subsp. lactis
BB-12]
gi|340364943|gb|AEK30234.1| Methyltransferase [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
Length = 430
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 166/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 161 DGSKIESVLMRYPN--------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMST 206
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+ + + NVVFMGMGEP+ NY A+V AVR ++ +P F
Sbjct: 207 GEILEQVRIAAAMMERGEVAGGPGRLSNVVFMGMGEPMGNYRAIVSAVRQISAMPPEGFG 266
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I + + + LAVSLHAP +R +++P R F ++++++A
Sbjct: 267 ISARNITVSTVGVVPGIRRLAQEGMPVRLAVSLHAPNNALRDELVPMNRRFNVDEVLDAA 326
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+E HA QL L + VN IP NPI S++
Sbjct: 327 HDYYLASKRRVSIEYALMRGINDQEIHARQLANRLNHYGDNWAHVNPIPLNPIEG-SKWT 385
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F +IL + I T+R GQDI GACGQL
Sbjct: 386 ASKPEDERRFLEILHNA-GITATLRDTRGQDIDGACGQLAA 425
>gi|297624942|ref|YP_003706376.1| radical SAM domain-containing protein [Truepera radiovictrix DSM
17093]
gi|297166122|gb|ADI15833.1| radical SAM enzyme, Cfr family [Truepera radiovictrix DSM 17093]
Length = 349
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/246 (45%), Positives = 153/246 (62%), Gaps = 12/246 (4%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS-----NIRNVVFMG 87
R TLC+SS VGC GC FCATG +GF NLS EI+ QL+ ++ IRNVV MG
Sbjct: 98 RKTLCVSSMVGCPAGCAFCATGALGFGRNLSRAEILGQLLVVAQAEGIAPREIRNVVLMG 157
Query: 88 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
MGE L NY + A+R M GL +SP+RIT+STVG+ I + ++ L LAVSL
Sbjct: 158 MGEALLNYDNALGAIRTMIHPEGL--DMSPRRITLSTVGLPGRIRRLAAERLPLVLAVSL 215
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
HAP + R +I+P A A +E+++ AL ++Q +++ IEY ML GVND A L
Sbjct: 216 HAPDEKTRREIIPTAHAHAIEEIIAALHDWQAAGGRRVTIEYTMLAGVNDALWQAEALVA 275
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LL V VNLIPFNP G+ S FR+SS +++ F+++L G+ + +VR G+D GAC
Sbjct: 276 LLRGLVVHVNLIPFNPWGA-SPFRSSSRAQIARFERVLTGA-GLSVSVRFSRGRDTGGAC 333
Query: 265 GQLVVN 270
GQL ++
Sbjct: 334 GQLALS 339
>gi|389704826|ref|ZP_10185930.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. HA]
gi|388611070|gb|EIM40179.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. HA]
Length = 411
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 164/261 (62%), Gaps = 20/261 (7%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSN 79
G R TLCISSQVGC + C+FC+TG GF+ +LS EI+ QL A+ R +
Sbjct: 132 GSRKTLCISSQVGCALDCSFCSTGKQGFQRDLSQAEIIGQLWMANYSYMEDVPVAERERS 191
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL NY A++ ++RIM + +S +R+T+ST G+V I++ D+ +
Sbjct: 192 VTNVVMMGMGEPLLNYDAVLSSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDI-DV 250
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVN 193
LA+SLHAP ++R +++P + +PLE L+ A + Y +++++ + IEY+MLDGVN
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLEHLIAACQRYITKDGNESARKHVTIEYVMLDGVN 310
Query: 194 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253
D+ +HA Q+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R
Sbjct: 311 DKPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIR 368
Query: 254 KQMGQDISGACGQLVVNLPDK 274
+ G DI ACGQLV + D+
Sbjct: 369 QTRGDDIDAACGQLVGQVADR 389
>gi|306822705|ref|ZP_07456083.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679]
gi|304554250|gb|EFM42159.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679]
Length = 393
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 166/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 125 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSA 170
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEIVEQ+ A++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 171 GEIVEQVRVAAKAMRDGEVAGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISAMPPEGFG 230
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F + ++++A
Sbjct: 231 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFDITQVLDAA 290
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 291 HDYYLASKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWT 349
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F IL + + T+R GQDI GACGQL
Sbjct: 350 ASKPEDERRFLDILHQA-GVTATLRDTRGQDIDGACGQLAA 389
>gi|392946634|ref|ZP_10312276.1| 23S rRNA m2A2503 methyltransferase [Frankia sp. QA3]
gi|392289928|gb|EIV95952.1| 23S rRNA m2A2503 methyltransferase [Frankia sp. QA3]
Length = 416
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/279 (40%), Positives = 161/279 (57%), Gaps = 29/279 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+VIMRY R+T+C+SSQ GC MGC FCATG G NLS+
Sbjct: 122 DGALLESVIMRYPD--------------RATVCVSSQAGCGMGCPFCATGQGGLTRNLST 167
Query: 65 GEIVEQLVHASRLSNIR----------NVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
EIVEQ+VHA+R+ R NVVFMGMGEPL NY+A+ A+R + P
Sbjct: 168 AEIVEQVVHAARVLRRRELAGGEGRLSNVVFMGMGEPLANYSAVTAALRRLIAPPPEGLG 227
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + +TVSTVG+V A+ + + + LAVSLHAP ++R +++P +P+ +++ A
Sbjct: 228 LSARGLTVSTVGLVPAMRRLAGEGLPVTLAVSLHAPDDELRDELVPINTRWPVAEVLAAA 287
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
EY + + +++ IEY ++DGVND+ A L LL VNLIP NP S ++ S+
Sbjct: 288 WEYAEVTGRRVSIEYALIDGVNDDVARADALATLLAGRLAHVNLIPLNPTDG-SSWQASA 346
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
+F + LR I TTVR G++I+ ACGQL
Sbjct: 347 PAGQRAFVRRLR-ERGIATTVRDTRGREIAAACGQLAAE 384
>gi|424864659|ref|ZP_18288562.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86B]
gi|400759405|gb|EJP73587.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86B]
Length = 360
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/250 (46%), Positives = 157/250 (62%), Gaps = 10/250 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----IRNVV 84
P R+TLCISSQ GC + C FCATG GF SNL+S EI+ QL A+ S I NVV
Sbjct: 98 PEEKRNTLCISSQAGCALQCTFCATGAQGFDSNLTSSEIIGQLWLANNFSTNKRKITNVV 157
Query: 85 FMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
FMGMGEPL NY +VE+ +IM + +S KRIT+ST GIV I +D+ ++LA+S
Sbjct: 158 FMGMGEPLLNYENVVESAQIMKDQNAYGLSRKRITISTSGIVPQILNLPNDI-DVSLAIS 216
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEEQHAHQ 201
LHAP D+R +I+P +PL++L+++ K Y K+ +++ I IEYI++ VND +HA +
Sbjct: 217 LHAPNDDLRNEIVPINNKYPLKELISSCKTYLKSFTNKKNITIEYILIKEVNDSLEHAKE 276
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L K+L +NLIPFNP + SSD +++F+ L I TVR+ G I
Sbjct: 277 LSKILNHLNCKINLIPFNPFDGCD-YERSSDQDINAFKSFLMKKGFI-ATVRRTRGDLID 334
Query: 262 GACGQLVVNL 271
GACGQLV NL
Sbjct: 335 GACGQLVGNL 344
>gi|392375105|ref|YP_003206938.1| pyruvate formate lyase activating enzyme 2 (yfgB) [Candidatus
Methylomirabilis oxyfera]
gi|258592798|emb|CBE69107.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Candidatus Methylomirabilis oxyfera]
Length = 372
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/255 (43%), Positives = 162/255 (63%), Gaps = 12/255 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----SNIRNVV 84
P R T C+S+QVGC + C FC TG MGF +L SGE+V+Q++ R I N+V
Sbjct: 115 PDERRLTACLSTQVGCALACAFCLTGKMGFVRHLQSGEVVDQVLALQRDLQPGERIGNLV 174
Query: 85 FMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
MGMGEPL+NY A V+A+ I++ GL + P+RIT+STVG+V I + G+NLA
Sbjct: 175 LMGMGEPLHNYDATVKALTILSHPMGLAY--PPRRITLSTVGLVPEIVRLGQSGLGVNLA 232
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
VSLHA ++R +++P R +PL++LM AL+ Y S++++ EY+++DGVND + A +
Sbjct: 233 VSLHASTDELRDRLVPINRRYPLKELMVALRAYPLPSRRRLTFEYVLIDGVNDRSEDARE 292
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L KLL + VNL+ N ++ FR S ++V FQ+ILR S +I T+R+ G DIS
Sbjct: 293 LVKLLRGLRCKVNLLSLNEAPAIP-FRRPSQERVEMFQRILR-SADILATIRESRGLDIS 350
Query: 262 GACGQLVVNLPDKIS 276
ACG L+ PD+ S
Sbjct: 351 AACG-LLATEPDQKS 364
>gi|255021262|ref|ZP_05293311.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus ATCC 51756]
gi|254969273|gb|EET26786.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus ATCC 51756]
Length = 357
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 151/243 (62%), Gaps = 7/243 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSNIRNVVF 85
P R TLCISSQVGC + C+FCATG G NLSS EIV Q+ A R L I NVVF
Sbjct: 95 PEEDRGTLCISSQVGCSLACSFCATGAQGLNRNLSSHEIVAQVRVARRHLGLDAITNVVF 154
Query: 86 MGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
MGMGEPL N ++ +R++ + +S +R+TVST G++ + + + P +NLA+SL
Sbjct: 155 MGMGEPLLNLKQVIPVIRLLLDDFAYGLSSRRVTVSTAGVLPGLEQLGRETP-VNLAISL 213
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
HA D+R +++P R +PL +LM A + Y +++I EY+MLDGVND + A L +
Sbjct: 214 HASRNDLRDELVPINRHYPLAQLMAACRSYPLPPRRRITFEYVMLDGVNDSDADARALVR 273
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LL +VNLIPFNP S +R SS ++ +F++I+ S I T R+ G DI+ AC
Sbjct: 274 LLRGLPALVNLIPFNPFPG-SPYRRSSLARIDAFREIVL-SAGIMTVTRRPRGDDIAAAC 331
Query: 265 GQL 267
GQL
Sbjct: 332 GQL 334
>gi|405355231|ref|ZP_11024457.1| Ribosomal RNA large subunit methyltransferase N [Chondromyces
apiculatus DSM 436]
gi|397091573|gb|EJJ22375.1| Ribosomal RNA large subunit methyltransferase N [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 366
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 167/287 (58%), Gaps = 22/287 (7%)
Query: 7 GFVEAVIMRYDSS------LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
GF +++R D L ++ G R+T+CIS+Q GC MGC FCATG MG
Sbjct: 87 GFTHKLLLRLDDGQTIETVLMRFKG-------RATVCISTQAGCAMGCVFCATGQMGLSR 139
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSP 114
+L+ GEIV Q++H +R+ ++RNVV MGMGEPL+NY + A+ ++ + + P
Sbjct: 140 HLTPGEIVGQVLHVNRVLRDANESLRNVVLMGMGEPLHNYEHTMAAIDVLVDAMGLAMGP 199
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ IT+STVG+V I + + ++LAVSLH R ++P R +PL++LM+A + Y
Sbjct: 200 RFITLSTVGVVPGIRRLADEERPIHLAVSLHGATDAERAALVPVGRRWPLDELMDACRYY 259
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
+ ++IF E+ ++ G ND +HAH LG+LL VN+IP NP S +
Sbjct: 260 SEKRGRRIFFEWTLIAGRNDTAEHAHTLGQLLRGMDAHVNVIPLNPTVGYDGG-PSRPES 318
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 281
V +FQ +L SY + +TVR++ G DI CGQL ++ ++ + +S P
Sbjct: 319 VRAFQDVL-TSYAVPSTVRQRRGIDIDAGCGQLKADV-ERRARRSLP 363
>gi|340782108|ref|YP_004748715.1| ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus SM-1]
gi|340556261|gb|AEK58015.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus SM-1]
Length = 370
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 151/243 (62%), Gaps = 7/243 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSNIRNVVF 85
P R TLCISSQVGC + C+FCATG G NLSS EIV Q+ A R L I NVVF
Sbjct: 108 PEEDRGTLCISSQVGCSLACSFCATGAQGLNRNLSSHEIVAQVRVARRHLGLDAITNVVF 167
Query: 86 MGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
MGMGEPL N ++ +R++ + +S +R+TVST G++ + + + P +NLA+SL
Sbjct: 168 MGMGEPLLNLKQVIPVIRLLLDDFAYGLSSRRVTVSTAGVLPGLEQLGRETP-VNLAISL 226
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
HA D+R +++P R +PL +LM A + Y +++I EY+MLDGVND + A L +
Sbjct: 227 HASRNDLRDELVPINRHYPLAQLMAACRSYPLPPRRRITFEYVMLDGVNDSDADARALVR 286
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LL +VNLIPFNP S +R SS ++ +F++I+ S I T R+ G DI+ AC
Sbjct: 287 LLRGLPALVNLIPFNPFPG-SPYRRSSLARIDAFREIVL-SAGIMTVTRRPRGDDIAAAC 344
Query: 265 GQL 267
GQL
Sbjct: 345 GQL 347
>gi|270284175|ref|ZP_05965684.2| radical SAM enzyme, Cfr family [Bifidobacterium gallicum DSM 20093]
gi|270277254|gb|EFA23108.1| radical SAM enzyme, Cfr family [Bifidobacterium gallicum DSM 20093]
Length = 369
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 170/292 (58%), Gaps = 32/292 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D +G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G
Sbjct: 94 WDLFDGSRIESVLMRYPN--------------RATLCISSQVGCGMGCPFCATGQLGLTR 139
Query: 61 NLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP- 109
N+S+GEI+EQ+ A+R+ + N+VFMGMGEP+ NY +++ AVR ++ +P
Sbjct: 140 NMSTGEILEQVRVAARMMREGEVAGGPGRLSNIVFMGMGEPMGNYKSVMSAVRQISAMPP 199
Query: 110 --FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 167
F +S + ITVSTVG+V I K + + LAVSLHAP ++R +++P + F +++
Sbjct: 200 DGFGISARNITVSTVGVVPGIRKLAQEGLPVRLAVSLHAPSDELRDKLVPMNKRFNTKQV 259
Query: 168 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSV 224
++A +Y S +++ IEY ++ G+ND+ +HA L K L + VN IP NPI
Sbjct: 260 LDAAHDYYLASNRRVSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHVNPIPLNPIEG- 318
Query: 225 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 276
S++ S + F IL + I T+R GQDI GACGQL + ++ S
Sbjct: 319 SKWTASKPEDEQQFLDILHRA-GITATMRDTRGQDIDGACGQLAAKVKNQQS 369
>gi|296454242|ref|YP_003661385.1| Cfr family radical SAM enzyme [Bifidobacterium longum subsp. longum
JDM301]
gi|296183673|gb|ADH00555.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp.
longum JDM301]
Length = 389
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 166/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 122 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMST 167
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 168 GEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFG 227
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F ++++A
Sbjct: 228 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAA 287
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 288 HDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWT 346
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S F +IL + I T+R GQDI GACGQL
Sbjct: 347 ASKPGDEQRFLEILHRA-GITATLRDTRGQDIDGACGQLAA 386
>gi|332530539|ref|ZP_08406478.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
19624]
gi|332040014|gb|EGI76401.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
19624]
Length = 404
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/307 (40%), Positives = 167/307 (54%), Gaps = 45/307 (14%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D +G VEAV + P R TLC+SSQ GC +GC FC+TG GF
Sbjct: 83 FDVGDGNAVEAVYI--------------PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSR 128
Query: 61 NLSSGEIVEQLVHASRLSNIR---------------NVVFMGMGEPLNNYAALVEAVRIM 105
NLS+GEIV QL HA R NVV MGMGEPL NYAALV A+R+M
Sbjct: 129 NLSTGEIVAQLWHAEHFLRARRQHPLQPGEDHRVITNVVMMGMGEPLQNYAALVPALRVM 188
Query: 106 -TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 164
+ +S +R+TVST G+V + + D P + LAVSLHAP +R ++P R +P+
Sbjct: 189 LDDHGYGLSRRRLTVSTSGVVPMMERLSEDCP-VALAVSLHAPNDGLRDGLVPLNRKYPI 247
Query: 165 EKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQ-----------VV 212
+L++ Y ++ + I EY MLDGVND+ +HA +L L++ F+
Sbjct: 248 HELLDTCLSYLAHAPRDFITFEYCMLDGVNDQPEHARELLALMQVFRQRAADLGHGVGCK 307
Query: 213 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 272
+NLIPFNP S + S ++V +F KIL + I TTVRK G DI ACGQL ++
Sbjct: 308 LNLIPFNPFPE-SGLKRSPGERVQAFAKILLEA-GIVTTVRKTRGDDIDAACGQLAGDVQ 365
Query: 273 DKISAKS 279
D+ S +
Sbjct: 366 DRTSVDA 372
>gi|239815175|ref|YP_002944085.1| Cfr family radical SAM protein [Variovorax paradoxus S110]
gi|239801752|gb|ACS18819.1| radical SAM enzyme, Cfr family [Variovorax paradoxus S110]
Length = 382
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 162/290 (55%), Gaps = 30/290 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D +G VEAV + P R TLC+SSQ GC +GC FC+TG GF
Sbjct: 83 FDVGDGNAVEAVFI--------------PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSR 128
Query: 61 NLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPF 110
NLS+GEIV QL A I NVV MGMGEPL NY ALV A+R M +
Sbjct: 129 NLSTGEIVAQLWFAEHFLRKHLKRDERVISNVVMMGMGEPLQNYTALVPALRTMLDDNAY 188
Query: 111 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+S +R+TVST G+V I++ +D P + +AVSLHAP +R ++P R +P+ +L+ A
Sbjct: 189 GLSRRRVTVSTSGVVPMIDRLGADCP-VAMAVSLHAPNDALRDDLVPLNRKYPIAELLEA 247
Query: 171 LKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQF 227
K Y ++ + I EY MLDGVND+ +HA QL +L+ T V NLIPFNP +
Sbjct: 248 CKRYLVHAPRDFITFEYCMLDGVNDQPEHARQLVELVRTHGVSCKFNLIPFNPFPASGLL 307
Query: 228 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 277
R S +V +F K L + TTVRK G DI ACGQL ++ D+ A
Sbjct: 308 R-SPQPRVLAFAKAL-SEAGLVTTVRKTRGDDIDAACGQLAGDVKDRTRA 355
>gi|124267188|ref|YP_001021192.1| hypothetical protein Mpe_A1999 [Methylibium petroleiphilum PM1]
gi|205829632|sp|A2SHB8.1|RLMN_METPP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|124259963|gb|ABM94957.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 394
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 160/268 (59%), Gaps = 20/268 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-----SRLSN---- 79
P R TLCISSQ GC +GC FC+TG GF NLS+GEIV QL HA +RL
Sbjct: 97 PENDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLSTGEIVAQLWHAEHQLRARLGTTERV 156
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NYAAL+ A+R+M + +S +R+TVST G+V I++ D P +
Sbjct: 157 ISNVVMMGMGEPLQNYAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLREDCP-V 215
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P R +P+ +L+ A + Y + + + I EY MLDGVND E
Sbjct: 216 ALAVSLHAPTDALRDDLVPLNRKYPIAELLEACQRYLEAAPRDFITFEYCMLDGVNDSEA 275
Query: 198 HAHQLGKLLETFQVV------VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251
A +L +L+ V +NLIPFNP S SS +V +F ++L + TT
Sbjct: 276 QARELLRLVGERGPVGRVPCKINLIPFNPF-PASGLTRSSVARVQAFAQLLVDG-GLVTT 333
Query: 252 VRKQMGQDISGACGQLVVNLPDKISAKS 279
VR+ G DI ACGQL + D+ +A++
Sbjct: 334 VRRTRGDDIDAACGQLAGEVQDRTNAQA 361
>gi|403049389|ref|ZP_10903873.1| radical SAM enzyme, Cfr family protein [SAR86 cluster bacterium
SAR86D]
Length = 270
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 160/257 (62%), Gaps = 10/257 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA----SRLSNIRNVV 84
P R TLCISSQ GC + C FCATG GF+SNLS+ EI+ Q+ A S + N+V
Sbjct: 8 PEKKRITLCISSQAGCALQCTFCATGAQGFESNLSANEIIGQVWLANFYNSSQQKVTNIV 67
Query: 85 FMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
FMGMGEP+ N+ ++E+ +IM + + +S KRIT+ST GI IN+ S++ ++LA+S
Sbjct: 68 FMGMGEPMLNFKPVIESAKIMKDQMAYSLSRKRITISTSGITPQINQLSSEI-DVSLAIS 126
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQ 201
LHAP+ +R +I+P + +P+++L+ + K+Y + + K I IEYI++DG+ND A +
Sbjct: 127 LHAPIDSLRDKIVPINKKYPIKELIKSCKKYLADYEGKRSITIEYILIDGINDSIDFAKK 186
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L +LL +NLIPFNP S ++ SS + F+ IL S TT+R G +
Sbjct: 187 LARLLSDVSCKINLIPFNPFEG-SSYKRSSQKNIEQFKSILM-SKGFITTLRVTRGDAVD 244
Query: 262 GACGQLVVNLPDKISAK 278
GACGQLV L + I +K
Sbjct: 245 GACGQLVGKLNNSIKSK 261
>gi|262038981|ref|ZP_06012317.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264]
gi|261747005|gb|EEY34508.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264]
Length = 357
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 148/241 (61%), Gaps = 8/241 (3%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVH-----ASRLSNIRNVVFMG 87
R TLC+SSQ+GC +GC+FCAT TM ++ NL + EI+ Q H + + NVVFMG
Sbjct: 108 RHTLCVSSQIGCLIGCDFCATATMKYERNLDASEILMQFYHIQNYLKEKNEKLGNVVFMG 167
Query: 88 MGEPLNNYAALVEAVRIMTGLPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
MGEP NY ++E++ I+ Q KR T+ST GIV INKF D +NLA+SLH+
Sbjct: 168 MGEPFLNYDNVIESINILNSDKGQNFSKRNFTISTSGIVPVINKFTEDENQINLAISLHS 227
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
D+R ++MP + + +++L AL YQK ++ +I EYI++D +N E + A +L L
Sbjct: 228 VKDDIRSELMPINKTYKVKELKEALINYQKKTKNRITFEYILIDDLNCETKDAFELMNFL 287
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
+F +VNLIP+NP+ + T S K F +L+ N+ T+R+ GQDI+ ACGQ
Sbjct: 288 HSFSCLVNLIPYNPVAG-KPYSTPSKKKQREFYTLLKDK-NVNVTLRETKGQDIAAACGQ 345
Query: 267 L 267
L
Sbjct: 346 L 346
>gi|268316491|ref|YP_003290210.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252]
gi|262334025|gb|ACY47822.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252]
Length = 364
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 116/278 (41%), Positives = 165/278 (59%), Gaps = 24/278 (8%)
Query: 5 NGGFVEAVIM-RYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+G VE+V++ +D G+ R T+C+SSQVGC MGC FCATG MGF+ NL+
Sbjct: 90 SGRHVESVLIPDFDEETGRVR--------RLTVCVSSQVGCAMGCAFCATGLMGFQQNLT 141
Query: 64 SGEIVEQLVHASRLSN------IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
+GEI +Q+ +RL+ I NVV+MGMGEPL NY A++ +V ++T +SP+R
Sbjct: 142 AGEIYDQVWQLNRLAEERFGRRITNVVYMGMGEPLLNYDAVLRSVALLTDRDGLGLSPRR 201
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR--AFPLEKLMNALKEY 174
ITVSTVG+ I + D LAVSLHAP R IMP R L+ L+ A++ +
Sbjct: 202 ITVSTVGLARRIRQLADDGVRFRLAVSLHAPTNAQRSAIMPVNRNEQTDLDDLIEAIRYF 261
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
+ + Q I EY + +G ND + AH+L L E VNLI +NP+ + FR S+++
Sbjct: 262 EARTGQTITYEYCLFEGFNDRPEDAHRLADLTEQAPGKVNLILYNPVEGLP-FRRPSEER 320
Query: 235 VSSFQKIL--RGSYNIRTTVRKQMGQDISGACGQLVVN 270
+ +F ++L RG + TVR+ GQDI+ ACGQL V
Sbjct: 321 LQAFIRVLVDRG---VTVTVRRSRGQDINAACGQLAVR 355
>gi|212715800|ref|ZP_03323928.1| hypothetical protein BIFCAT_00701 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661167|gb|EEB21742.1| hypothetical protein BIFCAT_00701 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 406
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/285 (39%), Positives = 166/285 (58%), Gaps = 32/285 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 138 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMSA 183
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEIVEQ+ A++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 184 GEIVEQVRVAAKAMRDGEVAGGPGRLSNIVFMGMGEPMGNYKSVLSAVRQISAMPPEGFG 243
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F ++++A
Sbjct: 244 ISARNITVSTVGVVPGIKKLMAEGIPVRLAVSLHAPNDELRDELVPMNKRFNTTQVLDAA 303
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 304 HDYYLASKRRVSIEYALMRGINDQAEHAKLLAKRLNHYGDNWAHVNPIPLNPIEG-SRWT 362
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 273
S + F IL + I T+R GQDI GACGQL D
Sbjct: 363 ASKPEDEQQFLDILHKA-GITATLRDTRGQDIDGACGQLAAKERD 406
>gi|244538894|dbj|BAH82937.1| predicted enzyme [Candidatus Ishikawaella capsulata Mpkobe]
Length = 387
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 156/262 (59%), Gaps = 17/262 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P RSTLCISSQ+GC +GC FCATG GF NL EI+ Q+ AS++
Sbjct: 128 PENNRSTLCISSQIGCTVGCKFCATGKQGFNRNLEVAEIIGQIWQASKILRETKLSSRKR 187
Query: 80 -IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPG 137
N+V MGMGEPL N +V ++ IM F +S +R+T+ST GIV AI K S +
Sbjct: 188 LFTNIVLMGMGEPLLNVKNVVSSIHIMLDKFGFGLSKRRVTISTAGIVPAIYKLAS-MID 246
Query: 138 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN---SQQKIFIEYIMLDGVND 194
+ LA+SLHAP +R +IMP + + + L+ A+K Y +N ++ KI IEY+ML+ +ND
Sbjct: 247 VGLAISLHAPNDLIRDKIMPINKKYNIAMLLAAVKHYIENGVANRGKITIEYVMLNHIND 306
Query: 195 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 254
+HAHQL +LL+ +NLIP+N S R SSD +++ F KIL Y T +RK
Sbjct: 307 SVEHAHQLARLLKNIPSKINLIPWNYFKGSSYLR-SSDSQINIFAKILI-EYGFTTIIRK 364
Query: 255 QMGQDISGACGQLVVNLPDKIS 276
G DI ACGQL N+ +I+
Sbjct: 365 TRGDDIDAACGQLTGNVISRIN 386
>gi|261856771|ref|YP_003264054.1| Cfr family radical SAM protein [Halothiobacillus neapolitanus c2]
gi|261837240|gb|ACX97007.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2]
Length = 392
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 157/258 (60%), Gaps = 15/258 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R+TLCISSQVGC + C FC+TG GF NL++ EIV QL A R+ + I
Sbjct: 116 PEDDRATLCISSQVGCSLACTFCSTGRQGFNRNLTTAEIVGQLWLAERMIDRAVNHNRAI 175
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVVFMGMGEPL N+ ++V+A IM + +S +R+T+ST GI+ AI++ LP +
Sbjct: 176 SNVVFMGMGEPLLNFESVVDAATIMLDDNAYGLSRRRVTISTSGIIPAIDRLAERLP-VA 234
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK-NSQQKIFIEYIMLDGVNDEEQH 198
LA+SLHAP +R ++P + +PL+ LM A Y K I EY+ML+GVNDE H
Sbjct: 235 LAISLHAPNDALRDVLVPINQKYPLDDLMAACDRYAKVVPHGAIIYEYVMLEGVNDEPVH 294
Query: 199 AHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
A ++ +LL + V VNLIPFNP S S ++ SS +++ F+ L+ + I T RK
Sbjct: 295 AEEMIRLLAPRKDAVKVNLIPFNPFPS-SGYKRSSRNRIERFRATLKAA-GINTVPRKTR 352
Query: 257 GQDISGACGQLVVNLPDK 274
G DI ACGQLV DK
Sbjct: 353 GDDIDAACGQLVGEFEDK 370
>gi|171742890|ref|ZP_02918697.1| hypothetical protein BIFDEN_02007 [Bifidobacterium dentium ATCC
27678]
gi|171278504|gb|EDT46165.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium dentium ATCC
27678]
Length = 393
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 165/281 (58%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 125 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSA 170
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEIVEQ+ A++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 171 GEIVEQVRVAAKAMRDGEVAGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISAMPPEGFG 230
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F ++++A
Sbjct: 231 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFDTTQVLDAA 290
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 291 HDYYLASKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWT 349
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F IL + + T+R GQDI GACGQL
Sbjct: 350 ASKPEDERRFLDILHQA-GVTATLRDTRGQDIDGACGQLAA 389
>gi|372270406|ref|ZP_09506454.1| radical SAM protein [Marinobacterium stanieri S30]
Length = 377
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 169/271 (62%), Gaps = 18/271 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR--------LSNI 80
P G R TLC+SSQVGC + C+FC+TG GF NLS+ EI+ QL A R ++
Sbjct: 101 PDGDRRTLCVSSQVGCSLDCSFCSTGKQGFNRNLSTAEIIAQLRVAIRSCGPFEPSKRHV 160
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL N+ +V+A ++M + +S +R+T+ST G+V A++K S + ++
Sbjct: 161 TNVVMMGMGEPLMNFENVVDATQLMMDDNAYGLSKRRVTLSTAGVVPALDKL-SQVSDVS 219
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEEQ 197
LA+SLHAP ++R Q++P + +P+E+L+ A Y ++ ++ +EY ++DGVND+ +
Sbjct: 220 LAISLHAPNNELRDQLVPINKRYPIEELIAASNRYLESLPDKRAATVEYTLIDGVNDQPE 279
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQM 256
HA +L KLL+ +NLIPFNP + S +R S+ + F+ IL R S I TTVR+
Sbjct: 280 HARELAKLLKQLPCKLNLIPFNPFPN-SGYRRPSEQAIQRFKDILVRAS--IITTVRRTR 336
Query: 257 GQDISGACGQLVVNLPDKI--SAKSTPPVTD 285
G D+ ACGQLV + D+ S K P V +
Sbjct: 337 GDDVDAACGQLVGQVEDRTRRSQKYIPVVQE 367
>gi|51892489|ref|YP_075180.1| hypothetical protein STH1351 [Symbiobacterium thermophilum IAM
14863]
gi|81610561|sp|Q67PQ7.1|RLMN_SYMTH RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|51856178|dbj|BAD40336.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 371
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 166/270 (61%), Gaps = 24/270 (8%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE+V+MR S G +++C+++QVGC+MGC FCA+ G NL++
Sbjct: 108 DGSQVESVLMR--QSWG------------NSVCVTTQVGCRMGCTFCASTVGGLVRNLTA 153
Query: 65 GEIVEQLVHASRL----SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRI 117
GEIV+Q+V R I VV MG GEPL NY +++AVR++ GL + + I
Sbjct: 154 GEIVDQIVMMQRELPQGERISTVVLMGSGEPLENYDHVLKAVRLVHDPEGL--NIGYRHI 211
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+ST GIV + + + + LA+SLHAP ++R Q+MP AR +PL +++ A +EY +
Sbjct: 212 TISTSGIVPGMRRLAEEGLPITLALSLHAPTDELRRQLMPVARIWPLAEVLAAAREYGEK 271
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
+ +++ EYI+++GVND + A QL +LL+ VNLIP NP+ Q+R ++V+
Sbjct: 272 TGRRVTYEYILIEGVNDGPEEARQLARLLKGALAHVNLIPMNPVAERPQYRRPGPERVNR 331
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQL 267
F++IL S I TTVR++MG +I ACGQL
Sbjct: 332 FKEILE-SNGIATTVRREMGGEIDAACGQL 360
>gi|217074618|gb|ACJ85669.1| unknown [Medicago truncatula]
Length = 221
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/113 (82%), Positives = 104/113 (92%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
QNG FVEAVIMRYD+ LGKY G+PRPGG R+TLCISSQVGCKMGC FCATG+MGFKSNLS
Sbjct: 94 QNGEFVEAVIMRYDTRLGKYGGEPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKSNLS 153
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKR 116
SGEIVEQLVHAS ++IRNVVFMGMGEPLNNY+A+VE+VRIM+G PFQ+S KR
Sbjct: 154 SGEIVEQLVHASAFAHIRNVVFMGMGEPLNNYSAVVESVRIMSGSPFQLSLKR 206
>gi|409197663|ref|ZP_11226326.1| ribosomal RNA large subunit methyltransferase N [Marinilabilia
salmonicolor JCM 21150]
Length = 345
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 155/266 (58%), Gaps = 18/266 (6%)
Query: 3 CQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNL 62
Q G F+EA + P R TLCISSQ+GCKMGC FC TG GF+ L
Sbjct: 83 AQKGLFIEAAYI--------------PEKERHTLCISSQIGCKMGCLFCMTGKQGFQGQL 128
Query: 63 SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVST 121
++GEIV Q++ + N+V+MGMGEP++N +++++ I T SP+R VST
Sbjct: 129 TAGEIVNQVISLPESDQLTNIVYMGMGEPMDNVENVLKSLEIFTSDWGMGWSPRRFNVST 188
Query: 122 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181
+G+ A+ +F + +LA+SLH P + R ++MP + +P+E+++++LKEY Q++
Sbjct: 189 IGVEPAMRRFIEE-SDAHLAISLHTPFNEERKKLMPIEQVYPIEEVIDSLKEYDFGRQRR 247
Query: 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241
I EYIM DGVND H L KLL + +NLI F+PI S R SSD+K+ F
Sbjct: 248 ISFEYIMFDGVNDTPAHVKGLTKLLNGIRCRINLIRFHPIPD-SPLRGSSDEKIKWFSDQ 306
Query: 242 LRGSYNIRTTVRKQMGQDISGACGQL 267
L + TT+R+ G+DI ACG L
Sbjct: 307 L-NRKGLTTTIRRSRGEDIYAACGLL 331
>gi|381159927|ref|ZP_09869159.1| 23S rRNA m2A2503 methyltransferase [Thiorhodovibrio sp. 970]
gi|380877991|gb|EIC20083.1| 23S rRNA m2A2503 methyltransferase [Thiorhodovibrio sp. 970]
Length = 368
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/244 (45%), Positives = 156/244 (63%), Gaps = 7/244 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNI--RNVVFM 86
P G R TLC+SSQVGC + C FCAT GF NL+ GEI+ Q+ A+R + + NVV M
Sbjct: 105 PEGKRRTLCVSSQVGCALDCRFCATAREGFSRNLTPGEIIGQVWAATRRTGLAPTNVVLM 164
Query: 87 GMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GMGEPL N+ A+V+A+ +M L + ++ R+T+ST G+V I + ++ ++LAVSLH
Sbjct: 165 GMGEPLANFDAVVQAMAVMQHDLAYMLAKTRVTLSTSGLVPNIYRL-KEVADVSLAVSLH 223
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
AP +R +++P R +PLE+L+ A K Y + +++I EY+MLDGVND HA L +
Sbjct: 224 APDNALRDELVPINRKYPLEELIPACKAYAGSDKRRRITWEYVMLDGVNDSLAHAKALIR 283
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LLE VNLIPFNP S F TS ++V +F+ L G+ + TT RK G I+ AC
Sbjct: 284 LLEGVPSKVNLIPFNPFAG-SGFATSPPERVDAFRLRLIGA-GLVTTTRKTRGDGIAAAC 341
Query: 265 GQLV 268
GQLV
Sbjct: 342 GQLV 345
>gi|317482872|ref|ZP_07941880.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA]
gi|419848065|ref|ZP_14371191.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 1-6B]
gi|419856052|ref|ZP_14378795.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 44B]
gi|291516841|emb|CBK70457.1| 23S rRNA m(2)A-2503 methyltransferase [Bifidobacterium longum
subsp. longum F8]
gi|316915717|gb|EFV37131.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA]
gi|386408743|gb|EIJ23635.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 1-6B]
gi|386414340|gb|EIJ28899.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 44B]
Length = 389
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 167/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC M C FCATG +G N+S+
Sbjct: 122 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMDCPFCATGKLGLTRNMST 167
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 168 GEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFG 227
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F +++++A
Sbjct: 228 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAA 287
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 288 HDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWT 346
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F +IL + I T+R GQDI GACGQL
Sbjct: 347 ASKPEDEQRFLEILHRA-GITATLRDTRGQDIDGACGQLAA 386
>gi|283456084|ref|YP_003360648.1| radical SAM family enzyme [Bifidobacterium dentium Bd1]
gi|283102718|gb|ADB09824.1| Radical SAM family enzyme [Bifidobacterium dentium Bd1]
Length = 389
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 165/282 (58%), Gaps = 32/282 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 121 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSA 166
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEIVEQ+ A++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 167 GEIVEQVRVAAKAMRDGEVAGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISAMPPEGFV 226
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F ++++A
Sbjct: 227 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFDTTQVLDAA 286
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 287 HDYYLASKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWT 345
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
S + F IL + + T+R GQDI GACGQL
Sbjct: 346 ASKPEDERRFLDILHQA-GVTATLRDTRGQDIDGACGQLAAK 386
>gi|120610108|ref|YP_969786.1| radical SAM protein [Acidovorax citrulli AAC00-1]
gi|205829658|sp|A1TM24.1|RLMN_ACIAC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120588572|gb|ABM32012.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax citrulli AAC00-1]
Length = 373
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 159/265 (60%), Gaps = 19/265 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-----SRLSN---- 79
P R TLCISSQ GC +GC FC+TG GF NL+SGEIV QL A +RL
Sbjct: 96 PEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQERV 155
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY ALV A+R M + +S +R+TVST G+V +++ D +
Sbjct: 156 ISNVVMMGMGEPLQNYTALVPALRTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDC-AV 214
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
+AVSLHAP +R Q++P R +PL +L++A Y +++ + I EY MLDGVND+ +
Sbjct: 215 AMAVSLHAPNDALRDQLVPLNRKYPLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPE 274
Query: 198 HAHQLGKLL-----ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL L+ E + NLIPFNP S S+ +V++F K+L + I TTV
Sbjct: 275 HARQLIDLVRPRGGEGVRCKFNLIPFNPF-PASGLHRSNPQQVAAFAKMLSDA-GIVTTV 332
Query: 253 RKQMGQDISGACGQLVVNLPDKISA 277
RK G DI ACGQL ++ D+ A
Sbjct: 333 RKTRGDDIDAACGQLAGDVKDRTRA 357
>gi|326316277|ref|YP_004233949.1| radical SAM family protein [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323373113|gb|ADX45382.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 373
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 159/265 (60%), Gaps = 19/265 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-----SRLSN---- 79
P R TLCISSQ GC +GC FC+TG GF NL+SGEIV QL A +RL
Sbjct: 96 PEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQERV 155
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY ALV A+R M + +S +R+TVST G+V +++ D +
Sbjct: 156 ISNVVMMGMGEPLQNYTALVPALRTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDC-AV 214
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
+AVSLHAP +R Q++P R +PL +L++A Y +++ + I EY MLDGVND+ +
Sbjct: 215 AMAVSLHAPNDALRDQLVPLNRKYPLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPE 274
Query: 198 HAHQLGKLL-----ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL L+ E + NLIPFNP S S+ +V++F K+L + I TTV
Sbjct: 275 HARQLIDLVRPRGAEGVRCKFNLIPFNPF-PASGLHRSNPGQVAAFAKLLSDA-GIVTTV 332
Query: 253 RKQMGQDISGACGQLVVNLPDKISA 277
RK G DI ACGQL ++ D+ A
Sbjct: 333 RKTRGDDIDAACGQLAGDVKDRTRA 357
>gi|91788473|ref|YP_549425.1| hypothetical protein Bpro_2611 [Polaromonas sp. JS666]
gi|123164823|sp|Q12AB5.1|RLMN_POLSJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91697698|gb|ABE44527.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas sp. JS666]
Length = 382
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 156/264 (59%), Gaps = 19/264 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLCISSQ GC +GC FC+TG GF NL++GEIV QL A
Sbjct: 96 PETDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVSQLWFAEHFLRQHLGRQERV 155
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY+ LV A+R+M + +S +R+TVST G+V I++ D P +
Sbjct: 156 ISNVVMMGMGEPLQNYSQLVPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAKDCP-V 214
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P + +P+ +L+ A YQ ++ + I EY MLDGVND+ +
Sbjct: 215 ALAVSLHAPQDALRDSLVPLNKKYPIAELLQACTRYQASAPRDFITFEYCMLDGVNDQPE 274
Query: 198 HAHQLGKLLET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL L++ NLIPFNP S + S+ +V++F KIL + I TTV
Sbjct: 275 HARQLVALMQNHSAGGLSCKFNLIPFNPF-PASGLKRSAMPQVAAFAKILMDA-GIVTTV 332
Query: 253 RKQMGQDISGACGQLVVNLPDKIS 276
RK G DI ACGQL ++ D+ S
Sbjct: 333 RKTRGDDIDAACGQLAGDVQDRTS 356
>gi|302878623|ref|YP_003847187.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2]
gi|302581412|gb|ADL55423.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2]
Length = 363
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 113/265 (42%), Positives = 159/265 (60%), Gaps = 13/265 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQ GC + C+FC+TG GF NL+ EI+ QL A+ +
Sbjct: 95 PESARGTLCISSQAGCALDCSFCSTGKQGFNRNLTVAEIIGQLWWANHQLGKNSEGNWPV 154
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL N+ V A+R+M + +S +R+TVST GIV A+++ + P +
Sbjct: 155 SNVVMMGMGEPLLNFDNTVSALRLMLDDQAYGLSRRRVTVSTSGIVPAMDRLREECP-VA 213
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHAP +R +++P + +PL++L+ A + Y +K + I EY+MLDGVND QH
Sbjct: 214 LAVSLHAPNDALRDKLVPVNQKYPLKELLGACQRYLEKAPRDFITFEYVMLDGVNDTVQH 273
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
AH+L +L++ NLIPFNP +S ++ S D + F+ +L + +I TT RK G
Sbjct: 274 AHELVRLVKDTPCKFNLIPFNPF-PLSPYKRSRPDAIQRFRDVLMQA-DIITTTRKTRGD 331
Query: 259 DISGACGQLVVNLPDKISAKSTPPV 283
DI+ ACGQL + DK T PV
Sbjct: 332 DIAAACGQLAGQVLDKTRRTGTRPV 356
>gi|334143334|ref|YP_004536490.1| ribosomal RNA large subunit methyltransferase N
[Thioalkalimicrobium cyclicum ALM1]
gi|333964245|gb|AEG31011.1| Ribosomal RNA large subunit methyltransferase N
[Thioalkalimicrobium cyclicum ALM1]
Length = 385
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 155/257 (60%), Gaps = 14/257 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--------SNI 80
P R TLCISSQVGC + C+FCAT GF NL + EI+ Q+ ++ I
Sbjct: 110 PEADRGTLCISSQVGCALDCSFCATAQQGFNRNLENWEIIAQMWVVNKALGANPKAERKI 169
Query: 81 RNVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVVFMGMGEPL N + + +M + +S +R+T+ST G+V AI+K +++ ++
Sbjct: 170 SNVVFMGMGEPLLNVTHVFPVAKLLMDDNAYGLSKRRVTISTAGVVPAIDKLKAEV-DVS 228
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQ 197
LA+SLHAP +R +++P + +PLE LM AL+ Y + K I +EY+MLD VNDE +
Sbjct: 229 LAISLHAPNNALRDELVPVNKKYPLEVLMPALRRYVADGHAKKHITVEYVMLDQVNDEIE 288
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HAHQL LL VNLIPFNP + R SS+++V FQ++L + I T+RK G
Sbjct: 289 HAHQLVGLLGDLVCKVNLIPFNPFPNTPYLR-SSNNRVHRFQRVLHEA-GINCTIRKTRG 346
Query: 258 QDISGACGQLVVNLPDK 274
DI ACGQL + D+
Sbjct: 347 DDIDAACGQLAGKVKDR 363
>gi|23466064|ref|NP_696667.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
longum NCC2705]
gi|81753640|sp|Q8G481.1|RLMN_BIFLO RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|23326790|gb|AAN25303.1| widely conserved hypothetical protein [Bifidobacterium longum
NCC2705]
Length = 389
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 167/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC M C FCATG +G N+S+
Sbjct: 122 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMDCPFCATGKLGLTRNMST 167
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 168 GEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFG 227
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F +++++A
Sbjct: 228 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAA 287
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 288 HDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWT 346
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F +IL + I T+R GQDI GACGQL
Sbjct: 347 ASKPEDEQRFLEILHRA-GITATLRDTRGQDIDGACGQLAA 386
>gi|383453201|ref|YP_005367190.1| radical SAM protein [Corallococcus coralloides DSM 2259]
gi|380734154|gb|AFE10156.1| radical SAM protein [Corallococcus coralloides DSM 2259]
Length = 358
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 108/267 (40%), Positives = 155/267 (58%), Gaps = 26/267 (9%)
Query: 9 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 68
+E V+MR+ R+T+C+S+Q GC MGC FCATG MG +L+ GEIV
Sbjct: 94 IETVLMRFKG--------------RATVCVSTQAGCAMGCVFCATGQMGLSRHLTPGEIV 139
Query: 69 EQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVS 120
Q++H +R+ +RN+V MGMGEPL+NY + AV I+ GL ++P+ IT+S
Sbjct: 140 GQVLHVTRILRAQGEALRNIVLMGMGEPLHNYEHTMAAVDILVDPKGL--ALAPRFITLS 197
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
TVG+V I + + + LAVSLH R ++PA R +PL +LM+A + Y ++
Sbjct: 198 TVGVVPGILRLADEARPVQLAVSLHGATDAERAALVPAGRRWPLNELMDACRYYVAKRKR 257
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
+IF E+ ++ G ND +HAH LG+LL VN+IP NP S D V +FQ
Sbjct: 258 RIFFEWTLISGRNDTAEHAHHLGQLLHGMDAHVNVIPLNPTVGYDGG-PSVPDAVRAFQD 316
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQL 267
+L SY + +TVR++ G DI CGQL
Sbjct: 317 VLT-SYGVPSTVRQRRGIDIDAGCGQL 342
>gi|322691316|ref|YP_004220886.1| hypothetical protein BLLJ_1127 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320456172|dbj|BAJ66794.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 389
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 167/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC M C FCATG +G N+S+
Sbjct: 122 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMDCPFCATGKLGLTRNMST 167
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 168 GEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFG 227
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F +++++A
Sbjct: 228 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAA 287
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 288 HDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWT 346
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F +IL + I T+R GQDI GACGQL
Sbjct: 347 ASKPEDEQRFLEILHRA-GITATLRDTRGQDIDGACGQLAA 386
>gi|408500961|ref|YP_006864880.1| radical SAM enzyme, Cfr family [Bifidobacterium asteroides PRL2011]
gi|408465785|gb|AFU71314.1| radical SAM enzyme, Cfr family [Bifidobacterium asteroides PRL2011]
Length = 395
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 162/281 (57%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY S R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 124 DGSRIESVLMRYPS--------------RATLCISSQVGCGMGCPFCATGQLGLTRNMST 169
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ AS++ + N+VFMGMGEP+ NY A++ AVR ++ LP F
Sbjct: 170 GEILEQVRAASQMMRSGQVAGGPGRLSNIVFMGMGEPMGNYRAVLSAVRQISALPPKGFG 229
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K + + LAVSLHAP +R +++P R F ++++A
Sbjct: 230 ISARNITVSTVGVVPGIRKLTKEGIPVRLAVSLHAPSDKLRDELVPMNRRFNTTQVLDAA 289
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S +++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 290 HDYYLASGRRVSIEYALMRGINDQAEHARLLAKRLNHYGDDWAHVNPIPLNPIEG-SRWT 348
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F IL + I T+R G DI GACGQL
Sbjct: 349 ASKPEDEQRFLDILHKA-GITATMRDTRGSDIDGACGQLAA 388
>gi|398807426|ref|ZP_10566304.1| 23S rRNA methyltransferase [Variovorax sp. CF313]
gi|398089436|gb|EJL79952.1| 23S rRNA methyltransferase [Variovorax sp. CF313]
Length = 382
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 122/290 (42%), Positives = 163/290 (56%), Gaps = 30/290 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D +G VEAV + P R TLC+SSQ GC +GC FC+TG GF
Sbjct: 83 FDVGDGNAVEAVFI--------------PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSR 128
Query: 61 NLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPF 110
NLS+GEIV QL A I NVV MGMGEPL NY+ALV A+R M +
Sbjct: 129 NLSTGEIVAQLWFAEHFLRKHLKRDERVISNVVMMGMGEPLQNYSALVPALRTMLDDNAY 188
Query: 111 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+S +R+TVST G+V I++ +D P + +AVSLHAP +R ++P R +P+ +L+ A
Sbjct: 189 GLSRRRVTVSTSGVVPMIDRLGADCP-VAMAVSLHAPNDALRDDLVPLNRKYPIAELIEA 247
Query: 171 LKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQF 227
K Y ++ + I EY MLDGVND+ +HA QL +L+ T + NLIPFNP +
Sbjct: 248 CKRYLAHAPRDFITFEYCMLDGVNDQPEHARQLIELVRTHGISCKFNLIPFNPFPASGLL 307
Query: 228 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 277
R S +V +F + L + TTVRK G DI ACGQL ++ D+ A
Sbjct: 308 R-SPQPRVLAFARTL-SEAGLVTTVRKTRGDDIDAACGQLAGDVKDRTRA 355
>gi|403049734|ref|ZP_10904218.1| radical SAM enzyme, Cfr family protein [SAR86 cluster bacterium
SAR86D]
Length = 361
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 160/257 (62%), Gaps = 10/257 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA----SRLSNIRNVV 84
P R TLCISSQ GC + C FCATG GF+SNLS+ EI+ Q+ A S + N+V
Sbjct: 99 PEKKRITLCISSQAGCALQCTFCATGAQGFESNLSANEIIGQVWLANFYNSSQQKVTNIV 158
Query: 85 FMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
FMGMGEP+ N+ ++E+ +IM + + +S KRIT+ST GI IN+ S++ ++LA+S
Sbjct: 159 FMGMGEPMLNFKPVIESAKIMKDQMAYSLSRKRITISTSGITPQINQLSSEI-DVSLAIS 217
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQ 201
LHAP+ +R +I+P + +P+++L+ + K+Y + + K I IEYI++DG+ND A +
Sbjct: 218 LHAPIDSLRDKIVPINKKYPIKELIKSCKKYLADYEGKRSITIEYILIDGINDSIDFAKK 277
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L +LL +NLIPFNP S ++ SS + F+ IL S TT+R G +
Sbjct: 278 LARLLSDVSCKINLIPFNPFEG-SSYKRSSQKNIEQFKSILM-SKGFITTLRVTRGDAVD 335
Query: 262 GACGQLVVNLPDKISAK 278
GACGQLV L + I +K
Sbjct: 336 GACGQLVGKLNNSIKSK 352
>gi|239621375|ref|ZP_04664406.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|384201448|ref|YP_005587195.1| hypothetical protein BLNIAS_01312 [Bifidobacterium longum subsp.
longum KACC 91563]
gi|239515836|gb|EEQ55703.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|338754455|gb|AEI97444.1| hypothetical protein BLNIAS_01312 [Bifidobacterium longum subsp.
longum KACC 91563]
Length = 389
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 167/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC M C FCATG +G N+S+
Sbjct: 122 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMDCPFCATGKLGLTRNMST 167
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 168 GEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFG 227
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F +++++A
Sbjct: 228 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAA 287
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 288 HDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWT 346
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F +IL + I T+R GQDI GACGQL
Sbjct: 347 ASKPEDEQRFLEILHRA-GITATLRDTRGQDIDGACGQLAA 386
>gi|365093283|ref|ZP_09330349.1| radical SAM protein [Acidovorax sp. NO-1]
gi|363414457|gb|EHL21606.1| radical SAM protein [Acidovorax sp. NO-1]
Length = 373
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 168/293 (57%), Gaps = 33/293 (11%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D +G VEAV + P R TLC+SSQ GC +GC FC+TG GF
Sbjct: 82 FDVGDGNAVEAVFI--------------PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSR 127
Query: 61 NLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPF 110
NL++GEIV QL A RL + I NVV MGMGEPL NY+ALV A+R+M +
Sbjct: 128 NLTTGEIVAQLWFAEHSLRQRLQSGDRVISNVVMMGMGEPLQNYSALVPALRVMLDDHGY 187
Query: 111 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+S +R+TVST G+V +++ D P + LAVSLHAP +R ++P R +P+E+LM A
Sbjct: 188 GLSRRRVTVSTSGVVPMMDRLALDCP-VALAVSLHAPNDPLRDNLVPLNRKYPIEELMAA 246
Query: 171 LKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET-----FQVVVNLIPFNPIGSV 224
Y ++ + I EY MLDGVND+ +HA QL +L++ + NLIPFNP +
Sbjct: 247 CNRYLAHAPRDFITFEYCMLDGVNDQVEHARQLIELVKPARGAGVRCKFNLIPFNPFPAS 306
Query: 225 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 277
R S ++V +F K+L I TTVRK G DI ACGQL ++ D+ A
Sbjct: 307 GLLR-SPQNQVLAFAKVL-SEAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRA 357
>gi|114320405|ref|YP_742088.1| radical SAM protein [Alkalilimnicola ehrlichii MLHE-1]
gi|122941195|sp|Q0A989.1|RLMN_ALHEH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|114226799|gb|ABI56598.1| 23S rRNA m(2)A-2503 methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 360
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 111/253 (43%), Positives = 158/253 (62%), Gaps = 10/253 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ-LVHASRLS----NIRNV 83
P R TLC+SSQVGC + C+FC+T GF NLS+ EI+ Q V +L+ I NV
Sbjct: 94 PDSGRGTLCVSSQVGCALDCSFCSTAQQGFNRNLSTAEIIGQYYVAYDQLTGTGEQITNV 153
Query: 84 VFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 142
VFMGMGEPL N A++ AVR+MT + +S +++T+ST G+V + + ++LAV
Sbjct: 154 VFMGMGEPLLNLEAVIPAVRLMTDDDAYGLSKRKVTISTSGVVTMLERMREQ-TDVSLAV 212
Query: 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQ 201
SLHAP +R +++P R PLE+L+ A Y + ++I EY+MLDGVND++ HAH+
Sbjct: 213 SLHAPNNALRDELVPINRKHPLERLIPACAAYIADKPHRRITWEYVMLDGVNDQDHHAHE 272
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L +LL VNLIPFNP +++R S ++ F +IL+ S+ + T R GQDI
Sbjct: 273 LARLLGDIPSKVNLIPFNPFPG-ARYRCSPRGRILRFVRILQ-SHGLTATTRVTRGQDID 330
Query: 262 GACGQLVVNLPDK 274
GACGQLV + D+
Sbjct: 331 GACGQLVGKVQDR 343
>gi|118602407|ref|YP_903622.1| radical SAM protein [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|205829871|sp|A1AW44.1|RLMN_RUTMC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|118567346|gb|ABL02151.1| 23S rRNA m(2)A-2503 methyltransferase [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 356
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 156/254 (61%), Gaps = 11/254 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-----IRNV 83
P R TLCISSQVGC + C FC+TG GF NL++ EI+ Q++ ASR N I NV
Sbjct: 97 PEKNRGTLCISSQVGCGLACTFCSTGMQGFNKNLTTAEIIAQVLIASRYLNSKTKRISNV 156
Query: 84 VFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 142
VFMGMGEPL N A+ A ++ L F +S +++T+ST G+V A+ + P ++LAV
Sbjct: 157 VFMGMGEPLLNEHAVYNACDLLLDDLAFGLSRRKVTISTSGVVPAMLRMSERTP-VSLAV 215
Query: 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAH 200
SLHA +R +++P + + LE+L+ A K Y + QK I EY+ML GVND +HA+
Sbjct: 216 SLHASDDHLRNELVPINQKYSLEELLKACKVYLQAGTQKRHILFEYVMLKGVNDSIEHAN 275
Query: 201 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
+L KLL+ +NLIPFN +Q++TSS + FQ IL IRT R+ G+DI
Sbjct: 276 KLVKLLKGISAKINLIPFNSFEK-TQYQTSSAQTIEKFQNILYHQ-GIRTMTRRTRGEDI 333
Query: 261 SGACGQLVVNLPDK 274
GACGQL + DK
Sbjct: 334 GGACGQLAGKVLDK 347
>gi|407938377|ref|YP_006854018.1| radical SAM protein [Acidovorax sp. KKS102]
gi|407896171|gb|AFU45380.1| radical SAM protein [Acidovorax sp. KKS102]
Length = 370
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 123/290 (42%), Positives = 167/290 (57%), Gaps = 30/290 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D +G VEAV + P R TLC+SSQ GC +GC FC+TG GF
Sbjct: 82 FDVGDGNAVEAVFI--------------PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSR 127
Query: 61 NLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPF 110
NL++GEIV QL A RL I NVV MGMGEPL NY+ALV A+++M +
Sbjct: 128 NLTTGEIVAQLWFAEHSLRKRLQTDERVISNVVMMGMGEPLQNYSALVPALKVMLDDHGY 187
Query: 111 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+S +R+TVST G+V +++ D P + LAVSLHAP +R ++P R +P+ +L++A
Sbjct: 188 GLSRRRVTVSTSGVVPMMDRLSQDCP-VALAVSLHAPNDPLRDNLVPLNRKYPISELLDA 246
Query: 171 LKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET--FQVVVNLIPFNPIGSVSQF 227
Y Q + I EY MLDGVND+ +HA QL +L++ + NLIPFNP +
Sbjct: 247 CNRYLQHAPRDFITFEYCMLDGVNDQVEHARQLIELVKRTGIRCKFNLIPFNPFPASGLL 306
Query: 228 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 277
R S ++V +F K+L + I TTVRK G DI ACGQL ++ D+ A
Sbjct: 307 R-SPHNQVQAFAKMLSDA-GIITTVRKTRGDDIDAACGQLAGDVKDRTRA 354
>gi|313140311|ref|ZP_07802504.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313132821|gb|EFR50438.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 396
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 168/289 (58%), Gaps = 32/289 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 124 DGSHIESVLMRYPN--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMST 169
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+R+ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 170 GEILEQVRVAARMMRDGEVAGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISAMPPEGFG 229
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP +R +++P + F ++++A
Sbjct: 230 ISARNITVSTVGVVPGIRKLAAEGIPVRLAVSLHAPSDALRDELVPMNKRFNTTQVLDAA 289
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y +S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 290 HDYFLSSKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDDWAHVNPIPLNPIEG-SRWT 348
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 277
S + F IL + I T+R G DI GACGQL + +A
Sbjct: 349 ASKPEDEQQFLDILHHA-GITATLRDTRGSDIDGACGQLAAKTKEAFAA 396
>gi|262374935|ref|ZP_06068169.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
lwoffii SH145]
gi|262309948|gb|EEY91077.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
lwoffii SH145]
gi|407007098|gb|EKE22852.1| hypothetical protein ACD_6C00703G0004 [uncultured bacterium]
Length = 411
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 164/261 (62%), Gaps = 20/261 (7%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSN 79
G R TLCISSQVGC + C+FC+TG GF+ +L+ EI+ QL A+ R +
Sbjct: 132 GLRRTLCISSQVGCALDCSFCSTGKQGFQRDLTQAEIIGQLWMANYSYMEDVPVLERERS 191
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL NY A++ ++RIM + +S +R+T+ST G+V I++ D+ +
Sbjct: 192 VTNVVMMGMGEPLLNYDAVLNSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQMVKDI-DV 250
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVN 193
LA+SLHAP ++R +++P + +PLE+L+ A + Y ++S++ + IEY+MLDGVN
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLEQLIAACQRYIAKDGNESSRKHVTIEYVMLDGVN 310
Query: 194 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253
D +HA Q+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R
Sbjct: 311 DHPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIR 368
Query: 254 KQMGQDISGACGQLVVNLPDK 274
+ G DI ACGQLV + D+
Sbjct: 369 QTRGDDIDAACGQLVGQVADR 389
>gi|421735563|ref|ZP_16174479.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
bifidum IPLA 20015]
gi|407297152|gb|EKF16618.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
bifidum IPLA 20015]
Length = 396
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 168/289 (58%), Gaps = 32/289 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 124 DGSHIESVLMRYPN--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMST 169
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+R+ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 170 GEILEQVRVAARMMRDGEVAGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISAMPPEGFG 229
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP +R +++P + F ++++A
Sbjct: 230 ISARNITVSTVGVVPGIRKLAAEGIPVRLAVSLHAPSDALRDELVPMNKRFNTTQVLDAA 289
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y +S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 290 HDYFLSSKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDDWAHVNPIPLNPIEG-SRWT 348
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 277
S + F IL + I T+R G DI GACGQL + +A
Sbjct: 349 ASKPEDEQQFLDILHRA-GITATLRDTRGSDIDGACGQLAAKTKEAFAA 396
>gi|313203119|ref|YP_004041776.1| 23S rRNA m(2)a-2503 methyltransferase [Paludibacter propionicigenes
WB4]
gi|312442435|gb|ADQ78791.1| 23S rRNA m(2)A-2503 methyltransferase [Paludibacter propionicigenes
WB4]
Length = 350
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 152/240 (63%), Gaps = 4/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLC+S+Q+GCKMGC FC TG GF+ NL++GEI+ Q+ + N+V+MGM
Sbjct: 100 PDKDRATLCVSTQIGCKMGCLFCMTGKQGFQGNLTTGEILNQMQSLPEFDKLTNIVYMGM 159
Query: 89 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEPL+N A+++++ +MT + SPKRITVST+GI+ A+ F + +LAVSLH+P
Sbjct: 160 GEPLDNVQAVMDSIEVMTSPWGYDWSPKRITVSTIGIIPAMMTFLENSKA-HLAVSLHSP 218
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
D R IMP +P+ ++++ ++ ++ SQ+++ EYIM GVND +HA++L +LL
Sbjct: 219 FDDERRDIMPIQSVYPITEVVSNIRRWELGSQRRVSFEYIMFKGVNDTPRHANELVRLLN 278
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +NLI F+PI T+ +D V FQ L+ + T+R G+DI ACG L
Sbjct: 279 GIKCRINLIRFHPIPDTPLEGTALEDIV-DFQNRLKAK-GLTVTIRASRGEDIFAACGML 336
>gi|310287528|ref|YP_003938786.1| radical SAM enzyme, Cfr family [Bifidobacterium bifidum S17]
gi|311064441|ref|YP_003971166.1| radical SAM family protein [Bifidobacterium bifidum PRL2010]
gi|309251464|gb|ADO53212.1| radical SAM enzyme, Cfr family [Bifidobacterium bifidum S17]
gi|310866760|gb|ADP36129.1| Radical SAM family enzyme [Bifidobacterium bifidum PRL2010]
Length = 396
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 168/289 (58%), Gaps = 32/289 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 124 DGSHIESVLMRYPN--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMST 169
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+R+ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 170 GEILEQVRVAARMMRDGEVAGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISAMPPEGFG 229
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP +R +++P + F ++++A
Sbjct: 230 ISARNITVSTVGVVPGIRKLTAEGIPVRLAVSLHAPSDALRDELVPMNKRFNTTQVLDAA 289
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y +S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 290 HDYFLSSKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDDWAHVNPIPLNPIEG-SRWT 348
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 277
S + F IL + I T+R G DI GACGQL + +A
Sbjct: 349 ASKPEDEQQFLDILHHA-GITATLRDTRGSDIDGACGQLAAKTKEAFAA 396
>gi|421734108|ref|ZP_16173195.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
bifidum LMG 13195]
gi|407077996|gb|EKE50815.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
bifidum LMG 13195]
Length = 396
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 167/289 (57%), Gaps = 32/289 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 124 DGSHIESVLMRYPD--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSA 169
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+R+ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 170 GEILEQVRVAARMMRDGEVTGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISAMPPEGFG 229
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP +R +++P + F ++++A
Sbjct: 230 ISARNITVSTVGVVPGIRKLAAEGIPVRLAVSLHAPSDALRDELVPMNKRFNTTQVLDAA 289
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y +S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 290 HDYFLSSKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDDWAHVNPIPLNPIEG-SRWT 348
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 277
S + F IL + I T+R G DI GACGQL + +A
Sbjct: 349 ASKPEDEQQFLDILHHA-GITATLRDTRGSDIDGACGQLAAKTKEAFAA 396
>gi|225156281|ref|ZP_03724759.1| radical SAM enzyme, Cfr family [Diplosphaera colitermitum TAV2]
gi|224803013|gb|EEG21258.1| radical SAM enzyme, Cfr family [Diplosphaera colitermitum TAV2]
Length = 367
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 156/290 (53%), Gaps = 40/290 (13%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+MRY R T C+SSQVGC MGC FCATG MGF +L++
Sbjct: 90 DGREIETVLMRYKG--------------RVTACVSSQVGCAMGCVFCATGQMGFTRHLTA 135
Query: 65 GEIVEQLVHASRL-----------------------SNIRNVVFMGMGEPLNNYAALVEA 101
GEIV Q +H R+ +RN+V MGMGEPL+NY A++ A
Sbjct: 136 GEIVAQALHVDRVLRRTADDAPALAEPGNASPHHRHERLRNIVLMGMGEPLHNYDAVMRA 195
Query: 102 VRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 160
+ I+ G + ++IT+STVG+V I + + ++LAVSLH Q R ++PAAR
Sbjct: 196 IDILRDGNGLALGARKITLSTVGVVPGIIRLADEHNPVHLAVSLHGATQAERAALVPAAR 255
Query: 161 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 220
A+PL+ LM A + Y + Q++IF E+ +++G ND A +G+LL Q VNLIP NP
Sbjct: 256 AWPLDALMEACRYYVQKQQRRIFFEWTLIEGKNDGPDQARAVGRLLRGMQAQVNLIPLNP 315
Query: 221 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
+ D FQ +L + + +T+R++ G DI CGQL
Sbjct: 316 TSGYAG-EPGRADAAKRFQAVL-AEHGLPSTIRQRRGIDIGAGCGQLATE 363
>gi|390936902|ref|YP_006394461.1| radical SAM protein [Bifidobacterium bifidum BGN4]
gi|389890515|gb|AFL04582.1| radical SAM enzyme, Cfr family protein [Bifidobacterium bifidum
BGN4]
Length = 396
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 168/289 (58%), Gaps = 32/289 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 124 DGSHIESVLMRYPN--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMST 169
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+R+ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 170 GEILEQVRVAARMMRDGEVAGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISAMPPEGFG 229
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP +R +++P + F ++++A
Sbjct: 230 ISARNITVSTVGVVPGIRKLTAEGIPVRLAVSLHAPSDALRDELVPMNKRFNTTQVLDAA 289
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y +S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 290 HDYFLSSKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDDWAHVNPIPLNPIEG-SRWT 348
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 277
S + F IL + I T+R G DI GACGQL + +A
Sbjct: 349 ASKPEDEQQFLDILHRA-GITATLRDTRGSDIDGACGQLAAKTKEAFAA 396
>gi|212704175|ref|ZP_03312303.1| hypothetical protein DESPIG_02230 [Desulfovibrio piger ATCC 29098]
gi|212672379|gb|EEB32862.1| 23S rRNA m2A2503 methyltransferase [Desulfovibrio piger ATCC 29098]
Length = 357
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 119/276 (43%), Positives = 164/276 (59%), Gaps = 27/276 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
Q+G VE V++ DS R G R T C+SSQVGC M C FC+TGTMGF+ N++
Sbjct: 85 QDGAEVETVLIPSDS---------REGVRRWTQCLSSQVGCAMACTFCSTGTMGFERNMT 135
Query: 64 SGEIVEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQV 112
GEI+ Q LV L + +RN+VFMGMGEPL N ++ A+ + GL F
Sbjct: 136 MGEILGQILVAREHLGDTRPDWPVLRNLVFMGMGEPLLNLKNVMRALESLNNDKGLNF-- 193
Query: 113 SPKRITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
SP+RITVST GI + + GL LAVSLHAP Q++R +IMP A +PLE L+ AL
Sbjct: 194 SPRRITVSTCGIEKGLRELGES--GLAYLAVSLHAPTQELRARIMPKAARWPLEDLLQAL 251
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
K Y ++++I EY++L GVND + A QL +++ + +NLI +NP ++ S
Sbjct: 252 KSYPLKTRERITFEYLLLGGVNDGLEQARQLARVVSDVKGKLNLIVYNP-SEGDPYKAPS 310
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++V +F++ L NI +RK GQDI ACGQL
Sbjct: 311 PERVLAFEQYL-WDRNITAIIRKSKGQDIKAACGQL 345
>gi|345877760|ref|ZP_08829498.1| hypothetical protein Rifp1Sym_be00130 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344225211|gb|EGV51576.1| hypothetical protein Rifp1Sym_be00130 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 379
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 161/250 (64%), Gaps = 7/250 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SNIRNVVFM 86
P G RST+C+SSQVGC + C+FC+T GF NLS EI+ Q+ ASR N+V M
Sbjct: 114 PDGERSTICVSSQVGCALNCSFCSTARQGFNRNLSVAEIIGQVWVASRELGHPPTNIVLM 173
Query: 87 GMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GMGEPL N+ A+V A+ IM + +S R+T+ST GIV A+ + ++ ++LAVSLH
Sbjct: 174 GMGEPLANFDAVVTAMDIMQDDSAYMLSKYRVTISTSGIVPALRQLR-EVSDVSLAVSLH 232
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
AP ++R Q++P + +PLE+L+ A +++ K + ++KI EY+MLDG+ND QHA L +
Sbjct: 233 APTNELRDQLVPINQKYPLEELIPACRDFIKGDKRRKITWEYVMLDGINDSIQHAKALIR 292
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LLE +NLIPFNP S ++TS ++V F++ L + I T RK G+DI AC
Sbjct: 293 LLEGTPSKLNLIPFNPFPGTS-YKTSPPERVEVFRQRLMKAGIISIT-RKTRGEDIDAAC 350
Query: 265 GQLVVNLPDK 274
GQLV + D+
Sbjct: 351 GQLVGRVKDR 360
>gi|94987122|ref|YP_595055.1| ribosomal RNA large subunit methyltransferase N [Lawsonia
intracellularis PHE/MN1-00]
gi|442555960|ref|YP_007365785.1| ribosomal RNA large subunit methyltransferase N [Lawsonia
intracellularis N343]
gi|123082152|sp|Q1MQJ3.1|RLMN_LAWIP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|94731371|emb|CAJ54734.1| predicted Fe-S-cluster redox enzyme [Lawsonia intracellularis
PHE/MN1-00]
gi|441493407|gb|AGC50101.1| ribosomal RNA large subunit methyltransferase N [Lawsonia
intracellularis N343]
Length = 358
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/252 (45%), Positives = 153/252 (60%), Gaps = 18/252 (7%)
Query: 28 RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-------- 79
+ G R T C+SSQVGC MGC FC+T TMGF NL++GEIV Q++ A N
Sbjct: 100 KAGNIRITQCLSSQVGCSMGCTFCSTATMGFIRNLTAGEIVSQVLLAKLHLNDNKPDKPI 159
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLP 136
IRN+VFMGMGEPL N L A+ I+ GL F S +RITVST GI I +
Sbjct: 160 IRNIVFMGMGEPLLNLTELTRALHILHSEKGLNF--SARRITVSTCGIKKGIQALSEN-- 215
Query: 137 GLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDE 195
GL LA+SLHA Q++R IMP A + L++L++ LK Y ++KI EY++L G+ND
Sbjct: 216 GLAFLALSLHASNQELRSTIMPKAAKWDLKELIDTLKNYSLKKREKITFEYLLLGGINDS 275
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA +L KL+ + +NLIP+NP + +++ + FQK+L S I T +RK
Sbjct: 276 PEHAKELAKLITDIKGKLNLIPYNP-AQGQPYLKPTEENILKFQKVL-WSKGIVTILRKS 333
Query: 256 MGQDISGACGQL 267
GQDI+ ACGQL
Sbjct: 334 KGQDINAACGQL 345
>gi|345863302|ref|ZP_08815514.1| ribosomal RNA large subunit methyltransferase N [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345125763|gb|EGW55631.1| ribosomal RNA large subunit methyltransferase N [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 365
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/250 (44%), Positives = 161/250 (64%), Gaps = 7/250 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SNIRNVVFM 86
P G RST+C+SSQVGC + C+FC+T GF NLS EI+ Q+ ASR N+V M
Sbjct: 100 PDGERSTICVSSQVGCALNCSFCSTARQGFNRNLSVAEIIGQVWVASRELGHPPTNIVLM 159
Query: 87 GMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GMGEPL N+ A+V A+ IM + +S R+T+ST GIV A+ + ++ ++LAVSLH
Sbjct: 160 GMGEPLANFDAVVTAMDIMQDDSAYMLSKYRVTISTSGIVPALRQLR-EVSDVSLAVSLH 218
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
AP ++R Q++P + +PLE+L+ A +++ K + ++KI EY+MLDG+ND QHA L +
Sbjct: 219 APTNELRDQLVPINQKYPLEELIPACRDFIKGDKRRKITWEYVMLDGINDSIQHAKALIR 278
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LLE +NLIPFNP S ++TS ++V F++ L + I + RK G+DI AC
Sbjct: 279 LLEGTPSKLNLIPFNPFPGTS-YKTSPPERVEVFRQRLMKA-GIISITRKTRGEDIDAAC 336
Query: 265 GQLVVNLPDK 274
GQLV + D+
Sbjct: 337 GQLVGRVKDR 346
>gi|386875874|ref|ZP_10118027.1| radical SAM enzyme, Cfr family [Candidatus Nitrosopumilus salaria
BD31]
gi|386806326|gb|EIJ65792.1| radical SAM enzyme, Cfr family [Candidatus Nitrosopumilus salaria
BD31]
Length = 351
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/274 (39%), Positives = 168/274 (61%), Gaps = 18/274 (6%)
Query: 5 NGGFVEAVIMRYD-SSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
N VEAV+M+YD S +G G PRST+C+S+Q+GC MGC FCATG MGF++NL
Sbjct: 87 NDSSVEAVLMQYDPSKIG--------GHPRSTICVSTQIGCAMGCVFCATGQMGFETNLK 138
Query: 64 SGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRI 117
+ IV Q++H + L ++ N+VFMGMGEP+ NY ++ AVRI+T F + + I
Sbjct: 139 AEHIVSQVIHFAELLQKRGEHVTNLVFMGMGEPMANYDEMIRAVRILTHDRGFGLGQRHI 198
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+ST+GI I K + + LA+SLHAP ++R +++P A +E ++ + + Y K
Sbjct: 199 TISTIGIRSGIEKLADENLQIGLAISLHAPNNELRKKLVPTAIPNSVEDIIESGRYYFKK 258
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
+ +++ EY ++ G+ND + A +L +LL+ VNLIP NP + F+ ++ +
Sbjct: 259 TGRRVTFEYALMAGINDSPEIAQELARLLKGNGSHVNLIPINP--TAGDFKRPTEKNIRE 316
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 271
F++IL + + TVR + G +IS ACGQL ++
Sbjct: 317 FEQILSNA-GVNCTVRVEKGTEISAACGQLRTDI 349
>gi|119476380|ref|ZP_01616731.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
HTCC2143]
gi|119450244|gb|EAW31479.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
HTCC2143]
Length = 386
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 168/282 (59%), Gaps = 30/282 (10%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
GG VE V++ P G R TLC+SSQVGC + C+FC+TG GF+ +LS+
Sbjct: 102 GGLVETVLI--------------PDGDRGTLCVSSQVGCSLDCSFCSTGKQGFQRDLSAA 147
Query: 66 EIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPK 115
EI+ Q+ A + I NVV MGMGEPL N+ +V+++ + M + +S +
Sbjct: 148 EIIGQVWLAINSYDAFPSTNKRIITNVVMMGMGEPLLNFDNVVQSMSLMMDDFGYGISKR 207
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY- 174
R+T+ST G+V A++K D+ ++LA+SLHAP ++R Q++P + +P+ +L+ A Y
Sbjct: 208 RVTLSTSGVVPALDKL-GDVSEVSLAISLHAPNDELRSQLVPINKKYPIAELLAACGRYW 266
Query: 175 --QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 232
Q ++ + +EY ++ GVND +HA +L KLL+ F +NLIPFNP S+S ++ S
Sbjct: 267 AKQTDTHRVTTVEYTLIAGVNDSREHAKELAKLLKDFPCKINLIPFNPF-SLSDYQRPSK 325
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
+ F ++L S +I TTVR G DI ACGQLV + D+
Sbjct: 326 KTIDQFWQVLSNS-SIVTTVRNTRGDDIDAACGQLVGQVADR 366
>gi|335420573|ref|ZP_08551611.1| radical SAM protein [Salinisphaera shabanensis E1L3A]
gi|334894932|gb|EGM33117.1| radical SAM protein [Salinisphaera shabanensis E1L3A]
Length = 393
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 160/281 (56%), Gaps = 31/281 (11%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ------------LVHASR 76
P R+TLCISSQ+GC + C+FCATG G NL++ EIV Q LVH R
Sbjct: 118 PEADRATLCISSQIGCALDCSFCATGKQGLNRNLTTAEIVGQVWMAEHDLRAQGLVHGER 177
Query: 77 LSNIRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDL 135
+ N+VFMGMGEPL NY A+V A+RI + F +S +R+TVST G+V +++ ++
Sbjct: 178 A--LSNIVFMGMGEPLANYRAVVPAIRILLDDYGFGLSKRRVTVSTSGMVPFMDRLREEV 235
Query: 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVN 193
+ LAVSLHAP D+R +++P R +PL +LM A Y + Q++ + EY++L+GVN
Sbjct: 236 -DVALAVSLHAPTDDLRDELVPINRKYPLAELMGACDRYVEGKQRRAHVVYEYVLLNGVN 294
Query: 194 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253
D + A L KLL +NLIPFN S + + ++ FQ IL +RTTVR
Sbjct: 295 DNPEQARGLVKLLADRPAKINLIPFNAFDG-SGYTRPDEARIRQFQDILHNK-GLRTTVR 352
Query: 254 KQMGQDISGACGQLV-----------VNLPDKISAKSTPPV 283
+ G DI ACGQLV +P ++ +K PV
Sbjct: 353 RTRGDDIDAACGQLVGRVRSKQKRHFREVPIRVESKRATPV 393
>gi|407004067|gb|EKE20529.1| hypothetical protein ACD_7C00539G0003 [uncultured bacterium]
Length = 340
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 164/267 (61%), Gaps = 19/267 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G F+E V++ R TLC+S+QVGC + C FCA+G GF NL
Sbjct: 84 EDGFFIETVLI--------------LSEKRKTLCLSTQVGCPIKCTFCASGKNGFYRNLK 129
Query: 64 SGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVS 120
S EI+EQ++H S+ + + ++VFMGMGEPL N A+VE++ +I F +S +RITVS
Sbjct: 130 SYEILEQIIHVSKKISDKPTHIVFMGMGEPLLNLDAVVESIEKISDKTKFNISQRRITVS 189
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
TVGI+ I K +NLA+S+HAP ++R +I+P ++ + L+ L+N L+ Y + +++
Sbjct: 190 TVGILENIRKLKERNLKVNLALSVHAPNDELRNKIIPFSKKYKLKDLINELRLYFETTKR 249
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
I EYI++D +ND +HA +L LL+ Q +NLIP+NPI S ++ + KV+ F++
Sbjct: 250 DISFEYILIDDLNDSIEHAKELAALLKNIQCSINLIPYNPIDGFS-YKKPNSAKVNKFKE 308
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQL 267
L N+ + R G DI+ ACGQL
Sbjct: 309 YL-ACCNMVVSQRYTKGDDIAAACGQL 334
>gi|410637360|ref|ZP_11347940.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola lipolytica
E3]
gi|410142983|dbj|GAC15145.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola lipolytica
E3]
Length = 378
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------ 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ + LS
Sbjct: 103 PEADRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIIGQVWRVATTIGLSKDTAKRP 162
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM L F +S +R+T+ST G+V A++K D+ +
Sbjct: 163 ITNVVMMGMGEPLLNLKHVVPAMDIMLDDLGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 221
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P + +P+E+ + ++ Y S Q K+ +EY+ML+G+ND
Sbjct: 222 ALAISLHAPTNDLRDEIVPVNKKYPIEEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDS 281
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AHQL K+L+ +NLIPFNP S + SS+ ++ F K+L Y I VRK
Sbjct: 282 TDQAHQLAKVLKETPCKINLIPFNPYPG-SPYTCSSNSRIDRFSKVLM-EYGITVVVRKT 339
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 340 RGDDIDAACGQLVGDVVDR 358
>gi|351731457|ref|ZP_08949148.1| radical SAM protein [Acidovorax radicis N35]
Length = 374
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 166/293 (56%), Gaps = 33/293 (11%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D +G VEAV + P R TLCISSQ GC +GC FC+TG GF
Sbjct: 83 FDVGDGNAVEAVFI--------------PEDDRGTLCISSQAGCAVGCRFCSTGHQGFSR 128
Query: 61 NLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPF 110
NL++GEI+ QL A RL + I NVV MGMGEPL NY+ALV A+R M +
Sbjct: 129 NLTTGEIIAQLWFAEHSLRQRLKSEDRVISNVVMMGMGEPLQNYSALVPALRTMLDDHGY 188
Query: 111 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+S +R+TVST G+V +++ D P + LAVSLHAP +R ++P R +P+++L+ A
Sbjct: 189 GLSRRRVTVSTSGVVPMMDRLSQDCP-VALAVSLHAPNDPLRDNLVPLNRKYPIDELLAA 247
Query: 171 LKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLL-----ETFQVVVNLIPFNPIGSV 224
Y ++ + I EY MLDGVND+ +HA QL +L+ E + NLIPFNP +
Sbjct: 248 CNRYLAHAPRDFITFEYCMLDGVNDQVEHARQLIELVKPARGEGVRCKFNLIPFNPFPAS 307
Query: 225 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 277
R S +V +F K+L I TTVRK G DI ACGQL ++ D+ A
Sbjct: 308 GLLR-SPQSQVLAFAKVL-SEAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRA 358
>gi|54294410|ref|YP_126825.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
gi|81368632|sp|Q5WWH4.1|RLMN_LEGPL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53754242|emb|CAH15719.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
Length = 382
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 160/259 (61%), Gaps = 14/259 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSN-------- 79
P R TLC+SSQVGC + C+FC+T GF NLS+ EI+ Q+ A+R LS+
Sbjct: 99 PEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNDGTHDKK 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A+ I M L + +S +R+T+ST G++ + + P +
Sbjct: 159 ITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVIPEMERLREVSP-V 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +
Sbjct: 218 ALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPE 277
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL KLL VNLIPFNP ++Q++ SS + + +F+ L + I T RK G
Sbjct: 278 HASQLIKLLHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRG 335
Query: 258 QDISGACGQLVVNLPDKIS 276
DI ACGQL + DK S
Sbjct: 336 DDIDAACGQLAGEVKDKTS 354
>gi|451982040|ref|ZP_21930374.1| Ribosomal RNA large subunit methyltransferase N [Nitrospina
gracilis 3/211]
gi|451760705|emb|CCQ91650.1| Ribosomal RNA large subunit methyltransferase N [Nitrospina
gracilis 3/211]
Length = 341
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 161/271 (59%), Gaps = 21/271 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G VEA+ M P R TLCIS+QVGC++ C+FC T +MG K +L+
Sbjct: 84 EDGQEVEAIWM--------------PETDRKTLCISTQVGCRLACSFCLTASMGLKRHLT 129
Query: 64 SGEIVEQLVHA----SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRIT 118
S EI+ Q + + + + N+VFMGMGEPL+NY A+ +A+R+M ++S ++IT
Sbjct: 130 SAEIIGQYLAVNADHTEENRVSNIVFMGMGEPLDNYDAVCDALRLMVSPEALRISTRKIT 189
Query: 119 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178
+ST G+V I +F S+ +NLA+SL+A R QIMP R +P+E L++ L+ Y
Sbjct: 190 LSTSGLVDRIERFKSENLHVNLAISLNATDNPTRDQIMPINRKYPIEVLLDCLRTYPLKP 249
Query: 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 238
+++ EY+ML G+ND ++ A +L KLL +NLIPFN S + ++ + +V +F
Sbjct: 250 SRRLTFEYVMLKGINDTDEDARRLAKLLRNIPSKINLIPFNAFDS-ADYQPPAPQRVQAF 308
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
Q L G + VRK G DI GACGQL +
Sbjct: 309 QDYLIGKH-YSVFVRKNRGTDILGACGQLAL 338
>gi|330790726|ref|XP_003283447.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum]
gi|325086712|gb|EGC40098.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum]
Length = 390
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 156/251 (62%), Gaps = 16/251 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLC+SSQVGC C FC TGT FK NL++ EIV Q+V A +L N
Sbjct: 142 PESSRGTLCVSSQVGCTFACTFCFTGTQKFKRNLTANEIVAQVVAARKLLNDFNASEERL 201
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLP 136
+ N+VFMG GEP NY + +A+ I+T GL + +ITVST G+V I + +D P
Sbjct: 202 LTNIVFMGQGEPFYNYRNVKKAISIITDSNGLA--IGKSKITVSTSGVVPIIERLGTDFP 259
Query: 137 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEE 196
G+ LA+SLH+P +VR +I+ A R +P+E+L+ + ++ K ++ +I +EY+ L V+D E
Sbjct: 260 GIGLAISLHSPNDEVRSKIVTANRQWPIEELVQSCIKFSKTTKSRITLEYVPLQDVHDTE 319
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
Q A L L + F +VN+IPFNP S +S+++++ F IL S N++TT+R+
Sbjct: 320 QDALDLIPLCKRFPSLVNIIPFNPWPG-SPHESSTNNQIQIFANILE-SNNVKTTIRQSR 377
Query: 257 GQDISGACGQL 267
G+DI ACGQL
Sbjct: 378 GRDIMAACGQL 388
>gi|406986564|gb|EKE07127.1| hypothetical protein ACD_18C00179G0011 [uncultured bacterium]
Length = 339
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/248 (41%), Positives = 157/248 (63%), Gaps = 15/248 (6%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--------SNIRNVV 84
R+T+C+SSQVGC +GC FCATGT+G NL+ EIV Q++ R + I N+V
Sbjct: 91 RNTVCVSSQVGCPVGCVFCATGTLGLGRNLTVSEIVLQVLFFGRYLKKNYKENTRITNIV 150
Query: 85 FMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
+MGMGEP NY ++ +++++ F + + I+VST G+V I KF + LNLA+S
Sbjct: 151 YMGMGEPFMNYDNVMASIKLLNDKDAFNIGARHISVSTSGVVTGIKKFAKEPLQLNLAIS 210
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 203
LHAP +R ++MP + F +EK+M A++EY+ + ++I EY+M+DG+ND E+HA QL
Sbjct: 211 LHAPNDALRSELMPINKRFGIEKVMAAVEEYKNDRGRQIMFEYLMMDGINDREEHARQLI 270
Query: 204 KLL--ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
+LL +T +VNLI +NP G +F+ S + F+ IL + I+ + R GQDI+
Sbjct: 271 RLLGEDTSLYMVNLIRYNPTG---KFKPSLTQNIKKFKNILMRA-GIKVSERFAFGQDIN 326
Query: 262 GACGQLVV 269
ACGQL +
Sbjct: 327 AACGQLAL 334
>gi|171909569|ref|ZP_02925039.1| YloN [Verrucomicrobium spinosum DSM 4136]
Length = 390
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 163/267 (61%), Gaps = 13/267 (4%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G F+E V++ SL Y + R TLC+SSQVGC C FCA+G GF NL++
Sbjct: 107 DGRFIETVLIPASPSL--YGER----SDRRTLCVSSQVGCAYDCKFCASGLAGFTRNLTA 160
Query: 65 GEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVST 121
GEIVEQ++ +L+ R N+VFMGMGEPL N ++ A+ ++ + + +TVST
Sbjct: 161 GEIVEQILQVEKLAGARVDNLVFMGMGEPLANLTNVMRAIEVLNAQWGVNIGARHMTVST 220
Query: 122 VGIVHAINKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
G+ I+K +D P + LA+SLH +VR QIMP R +PLE+L AL+ + +Q
Sbjct: 221 SGLAPQIHKL-ADFPLQVRLAISLHGASNEVRNQIMPVNRKYPLEELFPALEYWNSKKKQ 279
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
++ E+I++DGVND + A LG+ VNLIP+N + + Q++ S+ + +F+
Sbjct: 280 RLTFEFILIDGVNDSLEQARLLGEHASRLDAKVNLIPYNTVEGL-QWKRPSERRQDTFRD 338
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQL 267
I+ S+++ TT+R++ G DI+ ACGQL
Sbjct: 339 IV-ASHDVMTTLRREKGHDIAAACGQL 364
>gi|346226115|ref|ZP_08847257.1| ribosomal RNA large subunit methyltransferase N [Anaerophaga
thermohalophila DSM 12881]
Length = 345
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/242 (44%), Positives = 148/242 (61%), Gaps = 8/242 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R TLC+SSQVGCKMGC FC TG GF+ LS+GEIV Q++ + NVV+MGM
Sbjct: 95 PEDDRHTLCVSSQVGCKMGCLFCMTGKQGFQGQLSAGEIVNQVLSLPETELLTNVVYMGM 154
Query: 89 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GEP++N +++++ I T GL + SP+RI VST+GI A+ +F + +LA+SLH
Sbjct: 155 GEPMDNIDNVLKSLEIFTSDWGLAW--SPRRINVSTIGIEPAMRRFIEESEA-HLAISLH 211
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 205
P + R Q+MP + +P+E ++ L+EY Q++I EYIM DGVND H L KL
Sbjct: 212 TPFNEERRQLMPVEQVYPIETIIETLREYDFGRQRRISFEYIMFDGVNDTPAHIRGLTKL 271
Query: 206 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 265
L + +NLI F+PI S R +SD K+ F L + TT+R+ G+DI ACG
Sbjct: 272 LNGLRCRINLIRFHPIPD-SPLRGASDSKMKWFADQL-NKKGLITTIRRSRGEDIFAACG 329
Query: 266 QL 267
L
Sbjct: 330 LL 331
>gi|404379277|ref|ZP_10984342.1| ribosomal RNA large subunit methyltransferase N [Simonsiella
muelleri ATCC 29453]
gi|404294703|gb|EJZ50198.1| ribosomal RNA large subunit methyltransferase N [Simonsiella
muelleri ATCC 29453]
Length = 364
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/256 (44%), Positives = 158/256 (61%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NLS+ EI+ QL A++ I
Sbjct: 97 PETERGTLCISSQVGCALECTFCSTGRQGFNRNLSTAEIIGQLWWANKALGVTPKNERVI 156
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL NY ++ A+ IM + +S +R+TVST G+V +++ D+P +
Sbjct: 157 SNVVMMGMGEPLANYDNVINALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VA 215
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA VR +I+P + +PL++LM A Y K + I EY+MLDG+ND+ +H
Sbjct: 216 LAVSLHASNDQVRDKIVPLNKKYPLKELMAACNRYLMKAPRDFITFEYVMLDGINDKPEH 275
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
AH+L +L++ NLIPFNP + S + SS+ ++ F++IL + ++ TTVRK G
Sbjct: 276 AHELVQLVKDTPCKFNLIPFNPFPN-SGYERSSNKNINIFKEILMEA-DLVTTVRKTRGD 333
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 334 DIDAACGQLAGQVQDK 349
>gi|53802993|ref|YP_115280.1| hypothetical protein MCA2887 [Methylococcus capsulatus str. Bath]
gi|81680833|sp|Q603C0.1|RLMN_METCA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53756754|gb|AAU91045.1| conserved hypothetical protein TIGR00048 [Methylococcus capsulatus
str. Bath]
Length = 366
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/252 (43%), Positives = 160/252 (63%), Gaps = 9/252 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL-VHASRLSN---IRNVV 84
P R+TLC+SSQVGC + C+FC+T GF NL++ EI+ QL V RL I NVV
Sbjct: 107 PDEGRNTLCVSSQVGCSLECSFCSTARQGFNRNLTTAEIIGQLWVAQHRLDEEQRISNVV 166
Query: 85 FMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N+ +V A R+ M + +S +R+T+ST GIV A+++ +++ ++LAVS
Sbjct: 167 LMGMGEPLLNFGNVVAATRLMMDDFAYGLSKRRVTLSTSGIVPALDRL-AEVSDISLAVS 225
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQL 202
LHAP +R +++P R +P+ +L+ A K Y +++K+ EY+MLDGVND +HA L
Sbjct: 226 LHAPDDTLRNELVPINRKYPIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARAL 285
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
+LL VNLIPFNP + S +R S + ++ F + L+ + I TT RK G+DI
Sbjct: 286 VRLLSHVPSKVNLIPFNPFPN-SAYRCSHPETIARFAQTLQDAGLI-TTTRKTRGRDIDA 343
Query: 263 ACGQLVVNLPDK 274
ACGQLV + D+
Sbjct: 344 ACGQLVGKVNDR 355
>gi|111225135|ref|YP_715929.1| ribosomal RNA large subunit methyltransferase N [Frankia alni
ACN14a]
gi|122953799|sp|Q0RDQ8.1|RLMN_FRAAA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|111152667|emb|CAJ64408.1| Fe-S-cluster redox enzyme [Frankia alni ACN14a]
Length = 419
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 112/279 (40%), Positives = 161/279 (57%), Gaps = 29/279 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+VIMRY R+T+C+SSQ GC MGC FCATG G NLS+
Sbjct: 119 DGALLESVIMRYPD--------------RATVCVSSQAGCGMGCPFCATGQGGLTRNLST 164
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVR-IMTGLP--FQ 111
EIVEQ+VHA+R+ + NVVFMGMGEPL NY A+ A+R ++ P
Sbjct: 165 AEIVEQVVHAARVLRRQELAGGQGRLSNVVFMGMGEPLANYTAVTAALRRLIAPSPEGLG 224
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + +TVSTVG+V A+ + + + LAVSLHAP ++R +++P +P+ +++ A
Sbjct: 225 LSARGLTVSTVGLVPAMRRLAGEGLPVTLAVSLHAPDDELRDELVPINTRWPVAEVLAAA 284
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
EY + + +++ IEY ++DGVND+ A L LL VNLIP NP S ++ S+
Sbjct: 285 WEYAEVTGRRVSIEYALIDGVNDDVARADALATLLAGRLAHVNLIPLNPTEG-SSWQASA 343
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
+F + LR I TTVR G++I+ ACGQL
Sbjct: 344 PAGQRAFVRRLR-ERGIATTVRDTRGREIAAACGQLAAE 381
>gi|157144549|ref|YP_001451868.1| ribosomal RNA large subunit methyltransferase N [Citrobacter koseri
ATCC BAA-895]
gi|205829699|sp|A8AD69.1|RLMN_CITK8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157081754|gb|ABV11432.1| hypothetical protein CKO_00268 [Citrobacter koseri ATCC BAA-895]
Length = 388
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P R + +E ++A++ Y + S Q ++ IEY+MLD +ND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINRKYNIETFLDAVRRYLQKSNANQGRVTIEYVMLDHINDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|319794361|ref|YP_004156001.1| radical SAM protein [Variovorax paradoxus EPS]
gi|315596824|gb|ADU37890.1| radical SAM enzyme, Cfr family [Variovorax paradoxus EPS]
Length = 384
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 161/290 (55%), Gaps = 30/290 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D +G VEAV + P R TLC+SSQ GC +GC FC+TG GF
Sbjct: 83 FDVGDGNAVEAVFI--------------PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSR 128
Query: 61 NLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPF 110
NLS+GEIV QL A I NVV MGMGEPL NY ALV A+R M +
Sbjct: 129 NLSTGEIVAQLWFAEHFLRKHLKRDERVISNVVMMGMGEPLQNYTALVPALRTMLDDNAY 188
Query: 111 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+S +R+TVST G+V I++ +D + +AVSLHAP +R ++P R +P+ +L+ A
Sbjct: 189 GLSRRRVTVSTSGVVPMIDRLGTDC-AVAMAVSLHAPNDALRDDLVPLNRKYPIAELLEA 247
Query: 171 LKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQF 227
K Y +++ + I EY MLDGVND+ +HA QL +L+ V NLIPFNP +
Sbjct: 248 CKRYLEHAPRDFITFEYCMLDGVNDQPEHARQLVELVRKHDVSCKFNLIPFNPFPASGLL 307
Query: 228 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 277
R S +V +F + L + TTVRK G DI ACGQL ++ D+ A
Sbjct: 308 R-SPQPRVLAFARTL-SEAGLVTTVRKTRGDDIDAACGQLAGDVKDRTRA 355
>gi|52841777|ref|YP_095576.1| radical SAM protein [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378777412|ref|YP_005185849.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52628888|gb|AAU27629.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364508226|gb|AEW51750.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 386
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 160/259 (61%), Gaps = 14/259 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSN-------- 79
P R TLC+SSQVGC + C+FC+T GF NLS+ EI+ Q+ A+R LS+
Sbjct: 103 PEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKK 162
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A+ I M L + +S +R+T+ST G++ + + P +
Sbjct: 163 ITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-V 221
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +
Sbjct: 222 ALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPE 281
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL KLL VNLIPFNP ++Q++ SS + + +F+ L + I T RK G
Sbjct: 282 HASQLIKLLHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRG 339
Query: 258 QDISGACGQLVVNLPDKIS 276
DI ACGQL + DK S
Sbjct: 340 DDIDAACGQLAGEVKDKTS 358
>gi|397663988|ref|YP_006505526.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
gi|395127399|emb|CCD05591.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
Length = 382
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 160/259 (61%), Gaps = 14/259 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSN-------- 79
P R TLC+SSQVGC + C+FC+T GF NLS+ EI+ Q+ A+R LS+
Sbjct: 99 PEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKK 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A+ I M L + +S +R+T+ST G++ + + P +
Sbjct: 159 ITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-V 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +
Sbjct: 218 ALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPE 277
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL KLL VNLIPFNP ++Q++ SS + + +F+ L + I T RK G
Sbjct: 278 HASQLIKLLHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRG 335
Query: 258 QDISGACGQLVVNLPDKIS 276
DI ACGQL + DK S
Sbjct: 336 DDIDAACGQLAGEVKDKTS 354
>gi|225024692|ref|ZP_03713884.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
23834]
gi|224942581|gb|EEG23790.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
23834]
Length = 363
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/256 (44%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NLS+ EI+ QL A++ I
Sbjct: 96 PETDRGTLCISSQVGCALECTFCSTGRQGFNRNLSTAEIIGQLWWANKALGATPKDERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL NY +V A+ IM + +S +R+TVST G+V +++ D+P +
Sbjct: 156 SNVVMMGMGEPLANYDNVVTALSIMLDDHGYALSRRRVTVSTSGMVPQMDRLKEDMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHAP +R +I+P + +PL++LM A + Y K + + EY+MLDGVND+ +H
Sbjct: 215 LAVSLHAPNDAIRNEIVPLNKKYPLKELMAACQRYLVKAPRDFVTFEYVMLDGVNDKPEH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + SSD+ + F+ IL + + TVRK G
Sbjct: 275 ARELLELVKDVPCKFNLIPFNPFPN-SGYNRSSDENIRVFRDILYQA-GLVVTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|397667169|ref|YP_006508706.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
gi|395130580|emb|CCD08825.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
Length = 382
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 160/259 (61%), Gaps = 14/259 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSN-------- 79
P R TLC+SSQVGC + C+FC+T GF NLS+ EI+ Q+ A+R LS+
Sbjct: 99 PEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKK 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A+ I M L + +S +R+T+ST G++ + + P +
Sbjct: 159 ITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-V 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +
Sbjct: 218 ALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPE 277
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL KLL VNLIPFNP ++Q++ SS + + +F+ L + I T RK G
Sbjct: 278 HASQLIKLLHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRG 335
Query: 258 QDISGACGQLVVNLPDKIS 276
DI ACGQL + DK S
Sbjct: 336 DDIDAACGQLAGEVKDKTS 354
>gi|205829856|sp|Q5ZV93.2|RLMN_LEGPH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|307610246|emb|CBW99808.1| hypothetical protein LPW_15701 [Legionella pneumophila 130b]
Length = 382
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 160/259 (61%), Gaps = 14/259 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSN-------- 79
P R TLC+SSQVGC + C+FC+T GF NLS+ EI+ Q+ A+R LS+
Sbjct: 99 PEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKK 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A+ I M L + +S +R+T+ST G++ + + P +
Sbjct: 159 ITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-V 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +
Sbjct: 218 ALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPE 277
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL KLL VNLIPFNP ++Q++ SS + + +F+ L + I T RK G
Sbjct: 278 HASQLIKLLHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRG 335
Query: 258 QDISGACGQLVVNLPDKIS 276
DI ACGQL + DK S
Sbjct: 336 DDIDAACGQLAGEVKDKTS 354
>gi|54297459|ref|YP_123828.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
gi|81370554|sp|Q5X516.1|RLMN_LEGPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53751244|emb|CAH12655.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
Length = 382
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 160/259 (61%), Gaps = 14/259 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSN-------- 79
P R TLC+SSQVGC + C+FC+T GF NLS+ EI+ Q+ A+R LS+
Sbjct: 99 PEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKK 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A+ I M L + +S +R+T+ST G++ + + P +
Sbjct: 159 ITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-V 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +
Sbjct: 218 ALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPE 277
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL KLL VNLIPFNP ++Q++ SS + + +F+ L + I T RK G
Sbjct: 278 HASQLIKLLHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRG 335
Query: 258 QDISGACGQLVVNLPDKIS 276
DI ACGQL + DK S
Sbjct: 336 DDIDAACGQLAGEVKDKTS 354
>gi|421525773|ref|ZP_15972383.1| florfenicol resistance protein [Fusobacterium nucleatum ChDC F128]
gi|402258342|gb|EJU08814.1| florfenicol resistance protein [Fusobacterium nucleatum ChDC F128]
Length = 358
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/273 (39%), Positives = 157/273 (57%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++GG +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDGGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R N+ N+VFMGMGEPL N L +++ I++ +S
Sbjct: 138 NLSVSEILNQVYTVERRLRKKGENLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST GIV I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGIVSGIEKILLDKIPIELAISLHSAINEKRDKIIPINKNFPLEDLSAVLVEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISEADANALADFIHQFDHVVNLIPYNEVEGVEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IEKFYNYLKNVRRVNVTLRQEKGSDIDGACGQL 349
>gi|220931837|ref|YP_002508745.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
gi|219993147|gb|ACL69750.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
Length = 349
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 165/276 (59%), Gaps = 24/276 (8%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++G +E+V + Y+ G R+++CISSQVGC +GC FCATG G
Sbjct: 84 WELKDGETIESVFIPYE-------------GSRNSVCISSQVGCSLGCKFCATGLTGLIR 130
Query: 61 NLSSGEIVEQLVHASR-LSN-------IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 111
NL+ GEIV+Q++ + +SN + NVVFMGMGEPL N ++++A+ IM
Sbjct: 131 NLTPGEIVDQVLQIQKEISNDKYGSPRVSNVVFMGMGEPLANMKSVLKAIEIMNDSKGLN 190
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+ ++ITVST G+V I + + LA+SL+AP +R ++MP R FPLEKL+ A+
Sbjct: 191 IGKRKITVSTSGLVPQIKELADKKLQIVLAISLNAPNNALRDKLMPINRKFPLEKLLEAV 250
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
+ Y + + +++ EY++L G ND +HA QL LL VNLIPFNP+ ++F+ S
Sbjct: 251 RYYTEVTNRRVTFEYVLLKGTNDSPEHAFQLVNLLSDIHGHVNLIPFNPVQE-TEFKRPS 309
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ V+ F+ IL + + TTVR++ G I ACGQL
Sbjct: 310 KETVNRFKDILINN-GVETTVRQERGTRIEAACGQL 344
>gi|55981906|ref|YP_145203.1| ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus HB8]
gi|81363686|sp|Q5SGZ3.1|RLMN_THET8 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|55773319|dbj|BAD71760.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 355
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 161/283 (56%), Gaps = 22/283 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G EAV M Y++ R T+C+S+ VGC GC FCATG +GF NL++
Sbjct: 84 DGKKTEAVYMPYEN--------------RKTVCLSTMVGCPAGCTFCATGALGFGRNLTA 129
Query: 65 GEIVEQLV---HASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRIT 118
EI++QL+ + LS IRNVV MGMGEPL N +++AVRIM +SP+R+T
Sbjct: 130 AEILDQLLTIAYHQGLSPREIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALSPRRVT 189
Query: 119 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178
+STVGI I + + G+ LA+SLHAP + R +I+P A +P+ ++M A++ Y +
Sbjct: 190 LSTVGIPKGIYRLAEEDLGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMEAVRHYHAKT 249
Query: 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 238
++++ EY +L GVND A L KLL+ VNLIPFNP T ++
Sbjct: 250 KRRVTFEYTLLKGVNDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVVGTPRAGVLAFA 309
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 281
+++ R + T++R GQD+ ACGQL + +P ++ P
Sbjct: 310 EELKR--LGVPTSIRWSRGQDVGAACGQLALKVPRPLTLTPLP 350
>gi|438002576|ref|YP_007272319.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
acetatoxydans Re1]
gi|432179370|emb|CCP26343.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
acetatoxydans Re1]
Length = 288
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/267 (40%), Positives = 161/267 (60%), Gaps = 19/267 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G VE+V M+Y S G +T CISSQVGC MGC FCA+ G NL+
Sbjct: 31 EDGQMVESVKMKY--SFG------------TTACISSQVGCSMGCAFCASTEGGMVRNLA 76
Query: 64 SGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVS 120
E+ ++++ + SN++ VV MG GEPL NY L++ +RI+ L F +S +R+TVS
Sbjct: 77 WWEMADEVIAIEKDSNVKISRVVVMGSGEPLLNYDELIQFLRILNSPLAFNISYRRLTVS 136
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
T GIV I + + + LAVSLHAP D+R +MP +P+ +L++A K Y +++
Sbjct: 137 TCGIVPKIIRLAEEGLPITLAVSLHAPNDDIRSSLMPINERYPILQLLDACKYYIMKTKR 196
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
+I EYI++ +ND EQ A +L LL+ VNLIP NP+ +F+ S D ++ F++
Sbjct: 197 RITFEYILISDINDTEQCACELSNLLKDLLCHVNLIPLNPVEG-KKFKKSDDSRIRKFEQ 255
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQL 267
IL + I TVR++MG DI+ ACGQL
Sbjct: 256 ILLNN-GISATVRREMGSDINAACGQL 281
>gi|390951014|ref|YP_006414773.1| 23S rRNA m(2)A-2503 methyltransferase [Thiocystis violascens DSM
198]
gi|390427583|gb|AFL74648.1| 23S rRNA m(2)A-2503 methyltransferase [Thiocystis violascens DSM
198]
Length = 365
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 159/250 (63%), Gaps = 7/250 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNI--RNVVFM 86
P G RST+C+SSQVGC + C FCAT GF NL+ EI+ Q+ HA+R + NVV M
Sbjct: 101 PEGRRSTICVSSQVGCALECAFCATARQGFNRNLAVSEIIGQVWHAARQLDKPPTNVVMM 160
Query: 87 GMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GMGEPL N+ ++V+A+ IM L + ++ +R+T+ST GIV I + ++ ++LAVSLH
Sbjct: 161 GMGEPLANFESVVKAMDIMQDDLAYMLAKQRVTLSTSGIVPNIYRLR-EVSDVSLAVSLH 219
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
AP +R Q++P R +PL +L+ A K Y ++ ++K+ EY+MLDG+ND HA QL +
Sbjct: 220 APNDALRDQLVPINRKYPLAELLPACKAYIGQDKRRKVTWEYVMLDGINDSLAHAKQLIR 279
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LLE +NLIPFNP S F TS +++ +F+ L + I RK G +I+ AC
Sbjct: 280 LLEGIPSKLNLIPFNPFAG-SDFGTSPPERIEAFRLRLTRA-GIFAMTRKTRGDEIAAAC 337
Query: 265 GQLVVNLPDK 274
GQLV + D+
Sbjct: 338 GQLVGRVEDR 347
>gi|431931243|ref|YP_007244289.1| 2-vinyl bacteriochlorophyllide hydratase [Thioflavicoccus mobilis
8321]
gi|431829546|gb|AGA90659.1| 23S rRNA m2A2503 methyltransferase [Thioflavicoccus mobilis 8321]
Length = 374
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 116/259 (44%), Positives = 157/259 (60%), Gaps = 13/259 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNI--RNVVFM 86
P R TLCISSQVGC +GC FCATG GF NLS EI+ Q+ H +R + NVV M
Sbjct: 109 PEAGRRTLCISSQVGCALGCAFCATGQQGFARNLSLAEIIGQVWHVTRYLGVPPSNVVLM 168
Query: 87 GMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GMGEPL N+ A V A+ I+ + +S R+T+ST GIV I + + + + LAVSLH
Sbjct: 169 GMGEPLANFDAAVAAMEILQDDFAYMLSKYRVTLSTSGIVPNIYRLGT-VSDVALAVSLH 227
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
AP +R +++P R +PLE L+ A K Y + + +++I EY+MLDGVND + A QL +
Sbjct: 228 APNNALRDELVPINRKYPLEVLLPACKTYLRGDRRRRITWEYVMLDGVNDGMKEAKQLIR 287
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRTTVRKQMGQDISGA 263
LLE +NLIPFNP +F S ++V +F Q++LR + TT RK G I+ A
Sbjct: 288 LLEGIPSKINLIPFNPFPG-GRFAASPPERVEAFRQRLLRS--GLMTTTRKTRGDAIAAA 344
Query: 264 CGQLVVNLPDKISAKSTPP 282
CGQLV ++ TPP
Sbjct: 345 CGQLV----GQVQRHRTPP 359
>gi|46199876|ref|YP_005543.1| ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus HB27]
gi|81567593|sp|Q72HC1.1|RLMN_THET2 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|46197503|gb|AAS81916.1| florfenicol resistance protein [Thermus thermophilus HB27]
Length = 355
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 161/283 (56%), Gaps = 22/283 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G EAV M Y++ R T+C+S+ VGC GC FCATG +GF NL++
Sbjct: 84 DGKKTEAVYMPYEN--------------RKTVCLSTMVGCPAGCTFCATGALGFGRNLTA 129
Query: 65 GEIVEQLV---HASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRIT 118
EI++QL+ + LS IRNVV MGMGEPL N +++AVRIM +SP+R+T
Sbjct: 130 AEILDQLLTIAYHQGLSPREIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALSPRRVT 189
Query: 119 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178
+STVGI I + + G+ LA+SLHAP + R +I+P A +P+ ++M A++ Y +
Sbjct: 190 LSTVGIPKGIYRLAEEDLGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMEAVRHYHAKT 249
Query: 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 238
++++ EY +L GVND A L KLL+ VNLIPFNP T ++
Sbjct: 250 KRRVTFEYTLLKGVNDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVAGTPKAGVLAFA 309
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 281
+++ R + T++R GQD+ ACGQL + +P ++ P
Sbjct: 310 EELKR--LGVPTSIRWSRGQDVGAACGQLALKVPRPLTLTPLP 350
>gi|332799418|ref|YP_004460917.1| ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
acetatoxydans Re1]
gi|332697153|gb|AEE91610.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
acetatoxydans Re1]
Length = 343
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/267 (40%), Positives = 161/267 (60%), Gaps = 19/267 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G VE+V M+Y S G +T CISSQVGC MGC FCA+ G NL+
Sbjct: 86 EDGQMVESVKMKY--SFG------------TTACISSQVGCSMGCAFCASTEGGMVRNLA 131
Query: 64 SGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVS 120
E+ ++++ + SN++ VV MG GEPL NY L++ +RI+ L F +S +R+TVS
Sbjct: 132 WWEMADEVIAIEKDSNVKISRVVVMGSGEPLLNYDELIQFLRILNSPLAFNISYRRLTVS 191
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
T GIV I + + + LAVSLHAP D+R +MP +P+ +L++A K Y +++
Sbjct: 192 TCGIVPKIIRLAEEGLPITLAVSLHAPNDDIRSSLMPINERYPILQLLDACKYYIMKTKR 251
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
+I EYI++ +ND EQ A +L LL+ VNLIP NP+ +F+ S D ++ F++
Sbjct: 252 RITFEYILISDINDTEQCACELSNLLKDLLCHVNLIPLNPVEG-KKFKKSDDSRIRKFEQ 310
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQL 267
IL + I TVR++MG DI+ ACGQL
Sbjct: 311 ILLNN-GISATVRREMGSDINAACGQL 336
>gi|83647153|ref|YP_435588.1| Fe-S-cluster redox protein [Hahella chejuensis KCTC 2396]
gi|123753570|sp|Q2SDW1.1|RLMN_HAHCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|83635196|gb|ABC31163.1| predicted Fe-S-cluster redox enzyme [Hahella chejuensis KCTC 2396]
Length = 378
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 157/258 (60%), Gaps = 15/258 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR------LSNIR- 81
P R TLC+SSQ+GC + C+FC+TG GF NLSS EI+ QL A+R LS R
Sbjct: 101 PDNGRGTLCVSSQIGCSLDCSFCSTGKQGFNRNLSSAEIIGQLWIAARSFGDYDLSKERY 160
Query: 82 --NVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
N+VFMGMGEPL N+ +V A + M F +S +R+TVST G+V A++K D+ +
Sbjct: 161 VTNIVFMGMGEPLLNFDNVVRACDVMMDDFGFGISKRRLTVSTSGLVPALDKL-GDVTDV 219
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEE 196
+LA+SLHAP +R ++P + +P+E+L+ A Y + + +++I +EY ++ GVND E
Sbjct: 220 SLAISLHAPNNSLRDVLVPVNKKYPIEELLAACHRYLGKLSDKRRITVEYTLIAGVNDSE 279
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
HAH+L LL +NLIPFNP + S + S + FQK+L + + TVR
Sbjct: 280 THAHELRDLLRDLPCKINLIPFNPFPN-SGYERPSRNATLRFQKVLSDAGYV-ATVRTTR 337
Query: 257 GQDISGACGQLVVNLPDK 274
G DI ACGQLV + D+
Sbjct: 338 GDDIDAACGQLVGRVEDR 355
>gi|345303784|ref|YP_004825686.1| ribosomal RNA large subunit methyltransferase N [Rhodothermus
marinus SG0.5JP17-172]
gi|345113017|gb|AEN73849.1| Ribosomal RNA large subunit methyltransferase N [Rhodothermus
marinus SG0.5JP17-172]
Length = 362
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 153/249 (61%), Gaps = 15/249 (6%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN------IRNVVFM 86
R T+C+SSQVGC MGC FCATG MGF+ NL++GEI +Q+ +RL+ I NVV+M
Sbjct: 109 RLTVCVSSQVGCAMGCAFCATGLMGFQQNLTAGEIYDQVWQLNRLAEERFGRRITNVVYM 168
Query: 87 GMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GMGEPL NY A++ +V ++T +SP+RITVSTVG+ I + D LAVSLH
Sbjct: 169 GMGEPLLNYDAVIRSVALLTDRDGLGLSPRRITVSTVGLARRIRQLADDGVRFRLAVSLH 228
Query: 146 APVQDVRCQIMPAAR--AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 203
AP R IMP R L+ L++A++ ++ + Q I EY + +G ND + AH+L
Sbjct: 229 APTNAQRSAIMPVNRNEQTDLDDLIDAIRYFEARTGQTITYEYCLFEGFNDRPEDAHRLA 288
Query: 204 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL--RGSYNIRTTVRKQMGQDIS 261
+ E VNLI +NP+ + F S++++ +F ++L RG + TVR+ GQDI+
Sbjct: 289 DITEQAPGKVNLILYNPVEGLP-FHRPSEERLQAFIRVLVDRG---VTVTVRRSRGQDIN 344
Query: 262 GACGQLVVN 270
ACGQL V
Sbjct: 345 AACGQLAVR 353
>gi|312194967|ref|YP_004015028.1| radical SAM enzyme, Cfr family [Frankia sp. EuI1c]
gi|311226303|gb|ADP79158.1| radical SAM enzyme, Cfr family [Frankia sp. EuI1c]
Length = 397
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 114/282 (40%), Positives = 161/282 (57%), Gaps = 32/282 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY R+T+C+SSQ GC MGC FCATG G NL+
Sbjct: 123 DGATIESVLMRYPD--------------RATVCVSSQAGCGMGCPFCATGQGGLTRNLTV 168
Query: 65 GEIVEQLVHASRL-------------SNIRNVVFMGMGEPLNNYAALVEAVR-IMTGLP- 109
EIVEQ+V A+R+ + + NVVFMGMGEPL NY ALV A+R I P
Sbjct: 169 AEIVEQVVDAARVLRRGGLPAGQATDTRLSNVVFMGMGEPLANYKALVTALRRISDPAPD 228
Query: 110 -FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 168
+S + +TVSTVG+V AI + + + LAVSLHAP ++R ++P + + +++
Sbjct: 229 GLGISARTLTVSTVGLVPAIGRLAGEGLPVRLAVSLHAPDDELRDTLVPINTRWKVAEVL 288
Query: 169 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 228
+A +Y + ++I IEY ++DGVND+ + A LG+LL V VNLIP NP S +
Sbjct: 289 DAAWDYAARTGRRISIEYALIDGVNDQPERADLLGRLLRDRPVHVNLIPLNPTRG-SSWH 347
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
S+ F LR + I TTVR G++I+ ACGQL +
Sbjct: 348 ASAPAGEREFVARLR-ARGITTTVRDTRGREIAAACGQLAAD 388
>gi|317495216|ref|ZP_07953586.1| cfr family radical SAM enzyme [Gemella morbillorum M424]
gi|316914638|gb|EFV36114.1| cfr family radical SAM enzyme [Gemella morbillorum M424]
Length = 377
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 153/240 (63%), Gaps = 8/240 (3%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-----SRLSNIRNVVFMGM 88
++LC+++QVGC++GC FCA+ G K NL +GEIV Q++ R I ++V MG+
Sbjct: 119 NSLCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQELDKRGERISSIVIMGI 178
Query: 89 GEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEP NY +++ ++I+ + F + + ITVST GIV I F ++ +N AVSLHAP
Sbjct: 179 GEPFENYDEMMDFIKIVNSDESFNIGARHITVSTSGIVPKIYDFANEKIQINFAVSLHAP 238
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
++R +IMP RA+ ++KLM ALK YQK + ++I EY ++ VND+ +HA +L ++++
Sbjct: 239 TNELRSKIMPVNRAYNIDKLMEALKYYQKTTNRRITFEYGLMGKVNDQREHAEKLSEIIK 298
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLIP N + + RTS +D + +F+K+L+ + + T+R+ G DI ACGQL
Sbjct: 299 DLNCHVNLIPINYVPERNYVRTSKND-IFAFEKVLKKN-RVNVTIRRTQGDDIDAACGQL 356
>gi|296329385|ref|ZP_06871885.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296153505|gb|EFG94323.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 358
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 157/273 (57%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++GG +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDGGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R N+ N+VFMGMGEPL N L +A+ I++ +S
Sbjct: 138 NLSVSEILNQIYTVERRLRKKGENLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPINKNFPLEDLSAVLIEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGAEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ F L+ + T+R++ G DI GACGQL
Sbjct: 317 INKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|148244511|ref|YP_001219205.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA]
gi|205829924|sp|A5CX33.1|RLMN_VESOH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146326338|dbj|BAF61481.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA]
Length = 356
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 161/261 (61%), Gaps = 14/261 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-----IRNV 83
P R TLCISSQVGC + C FC+TG GF NL++ EI+ Q++ A++ N I N+
Sbjct: 97 PEKDRGTLCISSQVGCALACTFCSTGMQGFNKNLTTAEIIAQVLIANKYLNSKTKRISNI 156
Query: 84 VFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 142
VFMGMGEPL N A+ A ++ L F +S +++T+ST GIV +I + P ++LA+
Sbjct: 157 VFMGMGEPLLNEQAVYNACDLLLDDLAFGLSRRKVTISTSGIVPSILRMSKRTP-VSLAI 215
Query: 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAH 200
SLHAP +R +++P + + +E+L+ A K Y Q+ I EY+ML VND +HA+
Sbjct: 216 SLHAPNNQLRDKLVPVNQKYSIEELLKACKVYLNAGTQERHILFEYVMLKDVNDSTEHAN 275
Query: 201 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
+L KLL+ VNLIPFN +Q+++S+ + FQ IL IRT +R+ G+DI
Sbjct: 276 KLAKLLKAISAKVNLIPFNSFER-TQYQSSNAQTIEKFQDILYQQ-GIRTMMRRTRGEDI 333
Query: 261 SGACGQL---VVNLPDKISAK 278
GACGQL V+N K++A+
Sbjct: 334 DGACGQLAGKVLNKTKKLNAR 354
>gi|406943843|gb|EKD75743.1| hypothetical protein ACD_44C00034G0002 [uncultured bacterium]
Length = 349
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 155/247 (62%), Gaps = 10/247 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNV 83
P R TLC+SSQVGC + C FC+TG GF +L+ EI+ Q++ ASRL I NV
Sbjct: 97 PEDSRGTLCVSSQVGCAVNCTFCSTGKQGFSRDLTVAEIIGQVLLASRLLLPQKKAITNV 156
Query: 84 VFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 142
V MGMGEPL N+ +V+ + I + + +S +R+TVST GI+ + + P + LAV
Sbjct: 157 VMMGMGEPLLNFNNVVQTLDILLDDYAYGLSKRRVTVSTSGIIPKMIELKKRSP-VALAV 215
Query: 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQ 201
SLHAP ++R ++P R +PL +LM+ +Y K ++ + +EY+MLD +ND + HA Q
Sbjct: 216 SLHAPNDELRNVLVPVNRKYPLSELMSVCSDYFKEEPRRAVMMEYVMLDDINDSDLHAKQ 275
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L +LL+ V VNLIPFNP + + S +K+ FQK L S +I TT+R+ G+DI
Sbjct: 276 LIQLLKNKAVKVNLIPFNPFPKTT-YHCSPMEKIKKFQKKLMDS-DIMTTIRRTRGEDIE 333
Query: 262 GACGQLV 268
GACGQLV
Sbjct: 334 GACGQLV 340
>gi|407465360|ref|YP_006776242.1| radical SAM protein [Candidatus Nitrosopumilus sp. AR2]
gi|407048548|gb|AFS83300.1| radical SAM protein [Candidatus Nitrosopumilus sp. AR2]
Length = 353
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 168/278 (60%), Gaps = 18/278 (6%)
Query: 1 MDCQNGGFVEAVIMRYD-SSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFK 59
++ N VE V+M+YD + +G G PRST+C+S+Q+GC MGC FCATG MGF+
Sbjct: 83 LELSNDNSVETVLMQYDPTKIG--------GHPRSTVCVSTQIGCAMGCVFCATGQMGFE 134
Query: 60 SNLSSGEIVEQLVH-----ASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVS 113
+NL + IV Q++H R ++ N+VFMGMGEP+ NY ++ AV+I+T F +
Sbjct: 135 TNLKAEHIVSQVIHFAEILEKRGEHVTNLVFMGMGEPMANYDEMIRAVKILTHDRGFGLG 194
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
+ IT+ST+GI I + + + LA+SLHAP ++R +++P A +E+++ +
Sbjct: 195 QRHITISTIGIRSGIERLAEENLQIGLAISLHAPNNELRKKLVPTASPNSVEEIIELGRN 254
Query: 174 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDD 233
Y K + +++ EY ++ G+ND + A +L +LL+ VNLIP NP + F+ S+
Sbjct: 255 YFKKTGRRVTFEYALMAGINDSPEIATELARLLKGNGSHVNLIPINP--TAGDFKRPSEK 312
Query: 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 271
V F++IL + I TVR + G +IS ACGQL +L
Sbjct: 313 NVLEFERILSDA-GINCTVRIEKGTEISAACGQLRTDL 349
>gi|423348976|ref|ZP_17326632.1| ribosomal RNA large subunit methyltransferase N [Scardovia wiggsiae
F0424]
gi|393703205|gb|EJD65406.1| ribosomal RNA large subunit methyltransferase N [Scardovia wiggsiae
F0424]
Length = 398
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 167/287 (58%), Gaps = 37/287 (12%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+M+Y + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 123 DGSRIESVLMKYPT--------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMSA 168
Query: 65 GEIVEQLVHAS------------RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP--- 109
GEI+EQ+ +A+ RLSNI VFMGMGE L NY A+++ +R ++ LP
Sbjct: 169 GEILEQVRYAAAQARDGALGEPARLSNI---VFMGMGEALGNYNAMLKTIRQISALPPHG 225
Query: 110 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 169
F +S + ITVSTVGIV I K ++ + LAVSLHAP +R +++P + F ++++
Sbjct: 226 FGISARNITVSTVGIVPGIKKLMNEHIPVRLAVSLHAPSDKLRDELVPMNKRFNTTQVLD 285
Query: 170 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQ 226
A +Y +++++ IEY ++ G+ND+ HA L K L + V VN IP NPI S+
Sbjct: 286 AAHDYYMATKRRVSIEYALMKGINDQAGHARLLAKRLNHYGDDWVHVNPIPLNPIEG-SR 344
Query: 227 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 273
+ S + + F IL + I T+R G DI GACGQL + D
Sbjct: 345 WTASKPEDEARFLDILHNA-GIAATLRDTRGSDIDGACGQLAARVKD 390
>gi|381400771|ref|ZP_09925691.1| ribosomal RNA large subunit methyltransferase N [Kingella kingae
PYKK081]
gi|380834257|gb|EIC14105.1| ribosomal RNA large subunit methyltransferase N [Kingella kingae
PYKK081]
Length = 364
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 157/256 (61%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NLS+ EI+ QL A++ I
Sbjct: 96 PETERGTLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIGQLWWANKALGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL NY ++ A+ IM + +S +R+TVST G+V +++ D+P +
Sbjct: 156 SNVVMMGMGEPLANYDNVITALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA VR +I+P + +PL++LM A Y K + I EY+MLDGVND+ +H
Sbjct: 215 LAVSLHASNDKVRDEIVPLNKKYPLKELMAACNRYLVKAPRDFITFEYVMLDGVNDKPEH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + SS+ ++ F++IL + N+ TTVRK G
Sbjct: 275 ARELVELVKDTPCKFNLIPFNPFPN-SGYERSSNKNINIFKEILMEA-NLVTTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVKDK 348
>gi|115379954|ref|ZP_01467009.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
gi|115363034|gb|EAU62214.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
Length = 384
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 108/272 (39%), Positives = 157/272 (57%), Gaps = 26/272 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+G +E V+MR+ R+T+C+S+Q GC MGC FCATG MG +LS
Sbjct: 118 HDGQTIETVLMRFKG--------------RATVCVSTQAGCAMGCVFCATGQMGLARHLS 163
Query: 64 SGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPK 115
GEIV Q++H L +RN+V MGMGEPL+NY A +EAV I+ GL + P+
Sbjct: 164 PGEIVAQVLHVVGLLRQTGETLRNIVLMGMGEPLHNYDATLEAVDILVDPRGL--AIGPR 221
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
IT+STVG+V I + + + LAVSLH R ++P + +PL +LM+A + Y
Sbjct: 222 FITLSTVGVVPGIRRLADEDRPVQLAVSLHGATDAERAALVPVGKRWPLNELMDACRYYS 281
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235
+ ++IF E+ ++ G ND AH LG+LL+ + VN+IP NP S+ + V
Sbjct: 282 EKRGRRIFFEWTLIAGQNDTVDQAHTLGQLLKGMEAHVNVIPLNPTVGFGGT-PSTPEAV 340
Query: 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+FQ++L SY + +TVR++ G DI CGQL
Sbjct: 341 RAFQQVLT-SYGLPSTVRQRRGIDIDAGCGQL 371
>gi|254449223|ref|ZP_05062672.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
gi|198261200|gb|EDY85496.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
Length = 380
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/255 (41%), Positives = 155/255 (60%), Gaps = 12/255 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------SNIR 81
P R TLC+SSQVGC + C+FC+T GF NLS EI+ Q+ A R +
Sbjct: 111 PEDGRGTLCVSSQVGCSLDCSFCSTARQGFSRNLSVAEIIGQVWQAKRTLLELGEDERLT 170
Query: 82 NVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 140
NVV MGMGEPL NY +++AV +M + + +S +++T+ST G+V A+ + D L
Sbjct: 171 NVVMMGMGEPLMNYRPVIQAVNTMMDDMGYGLSKRKVTISTSGMVPAMERMIEDTQ-CAL 229
Query: 141 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHA 199
AVSLHAP +R +++P + PL +LM + + ++ + EY+ML+GVND + A
Sbjct: 230 AVSLHAPNDSLRDELVPINKKHPLNELMGVCDRWVEAGPKRNVTYEYVMLEGVNDNREQA 289
Query: 200 HQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 259
H+LGKLL+ + VNLIPFNP + S ++ SS+ ++ F++IL SY + T RK G D
Sbjct: 290 HELGKLLKAREAKVNLIPFNPFPN-SGYKRSSEARIKEFKRIL-NSYGVFTFPRKTRGDD 347
Query: 260 ISGACGQLVVNLPDK 274
I ACGQLV + D+
Sbjct: 348 IDAACGQLVGKVQDR 362
>gi|226939612|ref|YP_002794685.1| hypothetical protein LHK_00683 [Laribacter hongkongensis HLHK9]
gi|254807186|sp|C1DD41.1|RLMN_LARHH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|226714538|gb|ACO73676.1| Radical SAM domain containing protein [Laribacter hongkongensis
HLHK9]
Length = 366
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 157/260 (60%), Gaps = 13/260 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLC+SSQVGC + C FC+TG GF NLS+ EI+ QL A++ I
Sbjct: 96 PEDDRGTLCVSSQVGCALECTFCSTGRQGFNRNLSTAEIIGQLWWANKSMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL NY +V A+RIM + +S +R+T+ST G+V A+++ D P +
Sbjct: 156 SNVVMMGMGEPLANYDNVVAAMRIMLDDHGYGLSRRRVTLSTSGLVPAMDRLREDCP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHAP +R +I+P + +PL +L+ A + Y +K + + EY+MLD +ND +H
Sbjct: 215 LAVSLHAPNDRIRDEIVPINKKYPLRELLAACERYLEKAPRDFVTFEYVMLDQINDRPEH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L L+ NLIPFNP + S + +S++ V +F+ IL + I TTVRK G+
Sbjct: 275 ARELVALVRDVPCKFNLIPFNPFPN-SGYGRASNNAVRAFRDILAEAGYI-TTVRKTRGE 332
Query: 259 DISGACGQLVVNLPDKISAK 278
DI ACGQL + DK K
Sbjct: 333 DIDAACGQLAGQVQDKTQRK 352
>gi|333369698|ref|ZP_08461804.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)]
gi|332970237|gb|EGK09230.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)]
Length = 403
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 113/285 (39%), Positives = 173/285 (60%), Gaps = 28/285 (9%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G VE V++ D S K NG R TLCISSQVGC + C+FC+TG GF+ +L++
Sbjct: 110 GSLVETVLIPADDS--KVNG-------RKTLCISSQVGCALDCSFCSTGKQGFERDLTAA 160
Query: 66 EIVEQL--VHASRL---------SNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVS 113
EI+ QL +AS + +N+ NVV MGMGEPL NY +V ++ +M + + +S
Sbjct: 161 EIIGQLWVANASYMEGVDSSEWQNNVTNVVMMGMGEPLLNYKPVVSSMSLMLSDHAYGLS 220
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
+R+T+ST G+V + + D+ + LA+SLHAP ++R +++P + +PL +L+ A K
Sbjct: 221 KRRVTLSTSGVVPKMYDLYKDI-DVALAISLHAPNDELRNELVPINKKYPLSELIAAAKA 279
Query: 174 YQKNS----QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 229
Y ++ ++ + IEY+ML GVND ++HAHQL LLE +NLIPFNP + +
Sbjct: 280 YVHDNNPRHKKHVTIEYVMLAGVNDSDEHAHQLVALLEGLPSKINLIPFNPFPH-APYDR 338
Query: 230 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
SS++++ +F IL + T+R+ G DI ACGQLV + D+
Sbjct: 339 SSNNRIHAFSNILNNA-GFVCTIRQTRGDDIDAACGQLVGQVADR 382
>gi|348590089|ref|YP_004874551.1| ribosomal RNA large subunit methyltransferase N [Taylorella
asinigenitalis MCE3]
gi|347973993|gb|AEP36528.1| Ribosomal RNA large subunit methyltransferase N [Taylorella
asinigenitalis MCE3]
Length = 380
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 161/292 (55%), Gaps = 35/292 (11%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D QN +E V + P R TLCISSQ GC + C FC+TG GF
Sbjct: 86 FDVQNNNAIETVYI--------------PEDDRGTLCISSQAGCTVACRFCSTGHQGFNR 131
Query: 61 NLSSGEIVEQLVHA-----SRLSN-----------IRNVVFMGMGEPLNNYAALVEAVRI 104
NLS+ EI+ Q+ A L+ I NVVFMGMGEPL NY ++ A+++
Sbjct: 132 NLSTSEIIGQVWWARDEIKKSLNTDSGFEAEDDRVITNVVFMGMGEPLLNYDQVLPAIKL 191
Query: 105 MTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 163
+ + +S +R+TVST G++ ++K D P + LAVSLHAP ++R Q++P + +P
Sbjct: 192 LIDQNAYGLSKRRVTVSTSGVIPFMDKLSQDCP-VALAVSLHAPNDELRDQLIPLNKKYP 250
Query: 164 LEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 222
L +LM+A Y + + I EYIMLDGVND + HA QL + + VNLIPFNP
Sbjct: 251 LRELMDACNRYIDFAPRDFITFEYIMLDGVNDTDAHAKQLIDICREVKSKVNLIPFNPFP 310
Query: 223 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
S R SS ++V +F IL G+ I T RK G DI ACGQL ++ DK
Sbjct: 311 E-SGLRRSSHERVRAFSAILNGA-GIVATTRKTRGDDIDAACGQLAGDIKDK 360
>gi|443474683|ref|ZP_21064654.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudanabaena biceps PCC
7429]
gi|443020573|gb|ELS34518.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudanabaena biceps PCC
7429]
Length = 355
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 153/241 (63%), Gaps = 5/241 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SNIRNVVFM 86
P R T+C+S+QVGC MGC+FCATG GF+ NL+ EI++Q++ + + ++VFM
Sbjct: 108 PTSKRLTVCVSTQVGCPMGCDFCATGKGGFRRNLAKHEIIDQVLTVQEVMQQRVSHIVFM 167
Query: 87 GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
GMGEPL NY LV A+ ++ + + ITVSTVGI + I +F + + LAVSLHA
Sbjct: 168 GMGEPLLNYENLVGAIGVINK-DIGIGQRNITVSTVGIPNQIPRFAEEHLQVTLAVSLHA 226
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
P Q+VR Q++P+A +PL LM+ +EY + + ++I EY +L GVND + A +L L+
Sbjct: 227 PTQEVRAQVIPSADRYPLIALMDDCREYVEITGRRISFEYTLLAGVNDSAEQAQELAYLI 286
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
FQ VNLIP+NP+ S + ++ S+ + +F +IL + I +VR+ G + ACGQ
Sbjct: 287 RGFQSHVNLIPYNPV-SDADYKRPSERAIQTFVQILE-DHKIAVSVRRTRGLEADAACGQ 344
Query: 267 L 267
L
Sbjct: 345 L 345
>gi|310819181|ref|YP_003951539.1| ribosomal RNA large subunit methyltransferase n [Stigmatella
aurantiaca DW4/3-1]
gi|309392253|gb|ADO69712.1| Ribosomal RNA large subunit methyltransferase N [Stigmatella
aurantiaca DW4/3-1]
Length = 360
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 108/272 (39%), Positives = 157/272 (57%), Gaps = 26/272 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+G +E V+MR+ R+T+C+S+Q GC MGC FCATG MG +LS
Sbjct: 94 HDGQTIETVLMRFKG--------------RATVCVSTQAGCAMGCVFCATGQMGLARHLS 139
Query: 64 SGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPK 115
GEIV Q++H L +RN+V MGMGEPL+NY A +EAV I+ GL + P+
Sbjct: 140 PGEIVAQVLHVVGLLRQTGETLRNIVLMGMGEPLHNYDATLEAVDILVDPRGL--AIGPR 197
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
IT+STVG+V I + + + LAVSLH R ++P + +PL +LM+A + Y
Sbjct: 198 FITLSTVGVVPGIRRLADEDRPVQLAVSLHGATDAERAALVPVGKRWPLNELMDACRYYS 257
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235
+ ++IF E+ ++ G ND AH LG+LL+ + VN+IP NP S+ + V
Sbjct: 258 EKRGRRIFFEWTLIAGQNDTVDQAHTLGQLLKGMEAHVNVIPLNPTVGFGGT-PSTPEAV 316
Query: 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+FQ++L SY + +TVR++ G DI CGQL
Sbjct: 317 RAFQQVLT-SYGLPSTVRQRRGIDIDAGCGQL 347
>gi|300920672|ref|ZP_07137083.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
gi|419921561|ref|ZP_14439613.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-15]
gi|432534838|ref|ZP_19771810.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE234]
gi|300412353|gb|EFJ95663.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
gi|388397512|gb|EIL58490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-15]
gi|431059593|gb|ELD68946.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE234]
Length = 384
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND+
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDD 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|283832102|ref|ZP_06351843.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
gi|291071728|gb|EFE09837.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
Length = 388
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKATGVRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L G Y T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLMG-YGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|298529502|ref|ZP_07016905.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510938|gb|EFI34841.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans
ASO3-1]
Length = 332
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 113/275 (41%), Positives = 166/275 (60%), Gaps = 26/275 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G F+E VI+ P T CIS+QVGC MGC FC+TG MGFK NL+
Sbjct: 74 DGFFIETVII--------------PEKDYYTQCISTQVGCPMGCVFCSTGCMGFKRNLTP 119
Query: 65 GEIVEQLVHASR------LSNIR--NVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPK 115
GEI Q++ A R L + R NVV MGMGEPL N+ A+ +A+ +MT L +S +
Sbjct: 120 GEIASQVLVACRHLEDTGLDSTRLTNVVLMGMGEPLLNWDAVKKAMYMMTDSLGLGISRR 179
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
R+T+STVG+ + +F S G+ LAVSLHAP QD+R ++MP A + ++ L+ AL++Y
Sbjct: 180 RLTLSTVGVRDRLQEFGSSRLGM-LAVSLHAPDQDLRRRLMPGAATWDIKDLVRALEQYP 238
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235
+++I IEY++L +ND A L +LL + VNL+ +NP G ++ + +
Sbjct: 239 LAPRERITIEYVLLKDINDSPAQARALVRLLSRVKCKVNLLAYNP-GEQEGYQPPQEKTI 297
Query: 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
+F+++LR S + T+RK GQDIS ACGQL+ +
Sbjct: 298 LTFEEVLR-SKGLTVTLRKSKGQDISAACGQLIAD 331
>gi|404328938|ref|ZP_10969386.1| ribosomal RNA large subunit methyltransferase N [Sporolactobacillus
vineae DSM 21990 = SL153]
Length = 357
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/275 (40%), Positives = 165/275 (60%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+M ++ L ++C++SQVGC +GC+FCA+G + +L+S
Sbjct: 87 DGNLIETVLMPHEYGL--------------SVCVTSQVGCNIGCSFCASGLLRKNRDLTS 132
Query: 65 GEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSP 114
GE+VEQL+ + + RN VV MG+GEP +NY +++ +RI+ TGL +
Sbjct: 133 GEMVEQLLAIQKNLDGRNKEERVGHVVVMGIGEPFDNYENVMDFLRIINDQTGLA--IGA 190
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST GIV I +F +NLAVSLHAP ++R +IM RA+P+EKLM+A+ Y
Sbjct: 191 RHITVSTSGIVPKIYEFADIDWQVNLAVSLHAPNNELRSRIMKINRAYPIEKLMDAVDYY 250
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSD 232
+ + ++I EYIML VND ++ A QL KLLE + VNLIP+NP+ S+++ S
Sbjct: 251 LQKTNRRITFEYIMLKDVNDHKEEAIQLAKLLENKRHLAYVNLIPYNPVAEHSEYQRSEK 310
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ V F + L+ I VRK+ G DI ACGQL
Sbjct: 311 NTVGVFYETLKRR-GINAVVRKEFGTDIDAACGQL 344
>gi|269468799|gb|EEZ80403.1| hypothetical protein Sup05_0839 [uncultured SUP05 cluster
bacterium]
Length = 358
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 157/256 (61%), Gaps = 15/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV-------EQLVHASRLSNIR 81
P R TLCISSQVGC + C FC+TG GF NL++ EI+ E L H ++ I
Sbjct: 98 PEKDRGTLCISSQVGCSLACTFCSTGMQGFNRNLTTAEIIAQIIIANEHLSHENK--KIS 155
Query: 82 NVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 140
NVVFMGMGEPL N ++ A ++ L F +S +++T+ST G+V A+ + P ++L
Sbjct: 156 NVVFMGMGEPLLNEKSVYSACDLLLDDLAFGLSRRKVTISTSGVVPALYRMAQTTP-VSL 214
Query: 141 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQH 198
A+SLHAP ++R +++P + +P+E+LM A K Y + Q+ I EY+MLDGVND +H
Sbjct: 215 AISLHAPDDELRDELVPINQKYPIEELMAACKNYLTSGTQERHILFEYVMLDGVNDTMEH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L KLL VNLIPFNP +Q++TS + FQ +L + IRT R+ G+
Sbjct: 275 AKKLAKLLRGISAKVNLIPFNPFPK-TQYKTSKAFTIKQFQDVLFQA-GIRTMTRRTRGE 332
Query: 259 DISGACGQLVVNLPDK 274
D+ GACGQL + DK
Sbjct: 333 DVDGACGQLAGKVIDK 348
>gi|325265757|ref|ZP_08132444.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
gi|324982740|gb|EGC18365.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
Length = 364
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 113/256 (44%), Positives = 157/256 (61%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PETERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKALGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ NY +V A+ IM + +S +R+TVST G+V +++ D+P +
Sbjct: 156 SNVVMMGMGEPMANYDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA VR +I+P + +PL++LM A Y K + I EY+MLDGVND+ +H
Sbjct: 215 LAVSLHASNDKVRDEIVPLNKKYPLKELMAACNRYLTKAPRDFITFEYVMLDGVNDKPEH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
AH+L +L++ NLIPFNP + S + SS+ ++ F++IL + + TTVRK G
Sbjct: 275 AHELVQLVKDTPCKFNLIPFNPFPN-SGYERSSNKNINIFKEILMEA-GLVTTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|269926508|ref|YP_003323131.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC
BAA-798]
gi|269790168|gb|ACZ42309.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC
BAA-798]
Length = 371
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/272 (40%), Positives = 161/272 (59%), Gaps = 25/272 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G +E+V+M Y R+T+C+SSQ GC +GC FCATG GF NLS
Sbjct: 102 EDGNAIESVLMEYMDG-------------RATVCVSSQAGCAIGCTFCATGLGGFYRNLS 148
Query: 64 SGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPK 115
+GEIV Q+++ S+ + N+V+MGMGEPL N A+ +V + TG+ F S +
Sbjct: 149 AGEIVYQILYFSKKLRDKGKRLTNIVYMGMGEPLANLDAVWRSVENLHEPTGMNF--SAR 206
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
RIT+ST G+VH I++F +NLA+SLHAP D+R IMP R +P+ +L+ + K Y
Sbjct: 207 RITISTAGLVHQIDRFPPTDLQVNLAISLHAPNDDLRTSIMPINRRWPISELIASAKRYV 266
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235
+ + ++I EY+++ G N ++HA L LL VNLIP N + S F S ++V
Sbjct: 267 ERTHRRITFEYVLIAGCNSSKEHARDLSNLLRGLLCHVNLIPLNRVPG-SPFEPPSTEEV 325
Query: 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++F+ IL S I TVR + G DI ACGQL
Sbjct: 326 NTFRDILL-SAGIPCTVRLERGADILAACGQL 356
>gi|400287779|ref|ZP_10789811.1| hypothetical protein PPAM21_06876 [Psychrobacter sp. PAMC 21119]
Length = 409
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 176/309 (56%), Gaps = 37/309 (11%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G VE V++ D S K NG R TLC+SSQVGC + C+FC+TG GF+ +L++
Sbjct: 113 GSLVETVLIPADDS--KING-------RKTLCVSSQVGCALDCSFCSTGKQGFERDLTAA 163
Query: 66 EIVEQLV------------------HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM-T 106
EI+ QL H+ +N+ NVV MGMGEPL NY +V ++ +M +
Sbjct: 164 EIIGQLWVANASYMTDENDSLENVDHSLWENNVTNVVMMGMGEPLLNYKPVVGSMELMLS 223
Query: 107 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 166
+ +S +R+T+ST G+V + + D+ + LA+SLHAP ++R +++P + +PLE+
Sbjct: 224 DHAYGLSKRRVTLSTSGVVPKMYQLAQDI-DVALAISLHAPNDELRNELVPINKKYPLEE 282
Query: 167 LMNALKEY----QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 222
LM A + Y ++ + IEY+MLDGVND +HAHQL LL +NLIPFNP
Sbjct: 283 LMAAARNYVYDVNPRHKKHVTIEYVMLDGVNDSNEHAHQLVALLGDLPSKINLIPFNPFP 342
Query: 223 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI--SAKST 280
+ + SS++++ +F IL + T+R+ G DI ACGQLV + D+ SA
Sbjct: 343 H-ANYDKSSNNRIHAFSNILSEA-GFVCTIRQTRGDDIDAACGQLVGQVADRTRRSAAWQ 400
Query: 281 PPVTDIEDL 289
+ D E++
Sbjct: 401 QSIKDRENV 409
>gi|220935219|ref|YP_002514118.1| radical SAM protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219996529|gb|ACL73131.1| radical SAM protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 376
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 109/262 (41%), Positives = 155/262 (59%), Gaps = 19/262 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----------- 77
P R TLC+SSQVGC + C FC+T GF NLSS EIV QL A+R
Sbjct: 100 PEKDRGTLCVSSQVGCALDCTFCSTARQGFNRNLSSAEIVGQLWLANRRLAPERTVAGKA 159
Query: 78 --SNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSD 134
+ NVV MGMGEPL N+ +V+A+R+M + +S +R+T+ST GIV A+++
Sbjct: 160 PERVVSNVVLMGMGEPLLNFDNVVDAMRLMLDDNAYGLSKRRVTLSTSGIVPAMDRLKET 219
Query: 135 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGV 192
L + LAVSLHAP +R +++P R +P+ +L++A + Y ++ Q+I EY+ML+GV
Sbjct: 220 L-DVALAVSLHAPNDALRDELVPINRKYPIAELLDACRRYVREERHHQRITFEYVMLEGV 278
Query: 193 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
ND +HA QL LL +NLIPFNP +++R S D + FQ++L + T
Sbjct: 279 NDSPEHARQLIALLRDVPCKINLIPFNPFPE-TRYRRSGDAAIRRFQEML-ANAGYTTIT 336
Query: 253 RKQMGQDISGACGQLVVNLPDK 274
R+ G DI ACGQLV + D+
Sbjct: 337 RRTRGDDIDAACGQLVGKVADR 358
>gi|373496938|ref|ZP_09587481.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
12_1B]
gi|404366950|ref|ZP_10972326.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
ulcerans ATCC 49185]
gi|313689832|gb|EFS26667.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
ulcerans ATCC 49185]
gi|371964597|gb|EHO82110.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
12_1B]
Length = 350
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 159/277 (57%), Gaps = 20/277 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G +E V++R+ R+TLCISSQVGC + C FCATG GF NL
Sbjct: 88 EDGNTIETVLLRHKDK-------------RNTLCISSQVGCPVKCAFCATGQDGFVRNLD 134
Query: 64 SGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRI 117
EI+ Q+ R SNI N+VFMGMGEPL N + +++A+ I++ +S ++I
Sbjct: 135 VNEIINQVYTVERRLTKQGSNINNIVFMGMGEPLLNLSNVLKALDILSNENGINISKRKI 194
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+ST GIV I K + + LA+SLH+ + R I+P R++PLE L L+EYQ+
Sbjct: 195 TISTSGIVPNIEKILLEKLPIELAISLHSAINAKRDMIIPVNRSYPLEDLYAILQEYQRQ 254
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
++++I EYIM++ N + A+ L + F VVNLIP+NP+ ++F S+ K+
Sbjct: 255 TKRRISFEYIMINDFNVSDIDANALADFVHEFDHVVNLIPYNPVAG-TEFERPSEKKIEK 313
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
F L+ + T+R++ G DI GACGQL P K
Sbjct: 314 FFTFLKDVRKVNVTLRREKGTDIDGACGQLRQKAPKK 350
>gi|379009435|ref|YP_005267248.1| 23S rRNA methyltransferase [Wigglesworthia glossinidia endosymbiont
of Glossina morsitans morsitans (Yale colony)]
gi|375157959|gb|AFA41025.1| 23S rRNA methyltransferase [Wigglesworthia glossinidia endosymbiont
of Glossina morsitans morsitans (Yale colony)]
Length = 363
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 152/251 (60%), Gaps = 15/251 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR--------LSNI 80
P R+TLCIS Q+GC + C FCAT GF NL S E++ Q+ +A + L I
Sbjct: 97 PEKNRATLCISCQIGCALNCTFCATAMQGFNRNLDSSEMIGQIWNAMKIVHTKNYTLKKI 156
Query: 81 RNVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
N+VFMGMGEPL N L+ + I+ F +S +RIT+ST GI H I L +
Sbjct: 157 TNIVFMGMGEPLLNLKQLISTINIILDNHGFNLSKRRITISTAGISHIIQNLGKVL-DVK 215
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEE 196
LA+SLHAP +R QIMP R + + L++A K+Y K +Q KI IEY+ML+ VND +
Sbjct: 216 LAISLHAPNDILRNQIMPINRKYNICSLLSAAKKYISVSKANQGKISIEYVMLNKVNDSD 275
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
HA+QL L+ F VNLIP+N I SQ++ S+ +++ F +IL+ + I TT+RKQ
Sbjct: 276 NHAYQLKNCLKNFPCKVNLIPWNCIPK-SQYKPSNKNQIKKFSQILKKN-GIITTIRKQR 333
Query: 257 GQDISGACGQL 267
G I+ ACGQL
Sbjct: 334 GDSINAACGQL 344
>gi|404404818|ref|ZP_10996402.1| ribosomal RNA large subunit methyltransferase N [Alistipes sp.
JC136]
Length = 340
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 147/240 (61%), Gaps = 4/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P G R+TLC+SSQ GC+MGC FCATG G + +L++ EI+ Q+V + NVVFMGM
Sbjct: 98 PDGERATLCVSSQAGCRMGCKFCATGRQGLQRSLTAAEILNQIVSLPERDKLTNVVFMGM 157
Query: 89 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEPL+N ++ A+ I+T F SP RIT+ST G+V + +F D ++LAVSLH P
Sbjct: 158 GEPLDNTREVLRALEILTAEWGFGWSPTRITLSTAGVVPELRRF-LDATKVHLAVSLHNP 216
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
+ R +IMP RA+P+ ++ L+EY Q+++ EYI++ G+ND +H +L +LL
Sbjct: 217 FHEERAEIMPVERAWPVAEVAAILREYDFTHQRRVSFEYIVMSGLNDSPRHIRELTRLLN 276
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +NLI F+ I F + D + F+ L + I+TT+R G+DI ACG L
Sbjct: 277 GIKCRINLIRFHKIPDSPYF-SPDDAAMIRFRDAL-TARGIQTTIRASRGEDIQAACGLL 334
>gi|383788372|ref|YP_005472941.1| hypothetical protein CSE_07120 [Caldisericum exile AZM16c01]
gi|381364009|dbj|BAL80838.1| hypothetical protein CSE_07120 [Caldisericum exile AZM16c01]
Length = 349
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 162/280 (57%), Gaps = 15/280 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ + +E+V+++ +++G+ T C+S+QVGC M C FCATG MG
Sbjct: 82 FELSDKRLIESVLIKNTNNIGR---------TWFTACLSTQVGCSMACQFCATGKMGLIR 132
Query: 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 119
NL +GEIVEQ + ++S + N+VFMGMGEPL NY + +A+ I+T ++ +RIT+
Sbjct: 133 NLEAGEIVEQFLQLEKISPVSNIVFMGMGEPLLNYENVKKAIEILTDENGRELGKRRITI 192
Query: 120 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 179
ST GI I K ++P + LA+SLHA +Q R +MP + +PL KL AL Y + +
Sbjct: 193 STSGITPMIYKLADEIPSVKLAISLHAAIQRKRDSLMPGLKNYPLNKLKEALIYYNERTG 252
Query: 180 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSF 238
+ +EY+++D VND + A L K + V VNLI +N I S+S F+ S K F
Sbjct: 253 NTVTLEYLLIDNVNDTKSDAEALLKFSRDLKFVKVNLIHYNEIPSIS-FKPSK--KEIEF 309
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 278
QK L S +RTT+R G D+S ACGQL N + + K
Sbjct: 310 QKFLL-SNGLRTTLRLSKGTDVSAACGQLATNSKESLQFK 348
>gi|32491320|ref|NP_871574.1| hypothetical protein WGLp571 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|81741588|sp|Q8D1Y5.1|RLMN_WIGBR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|25166527|dbj|BAC24717.1| yfgB [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 382
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/264 (42%), Positives = 165/264 (62%), Gaps = 16/264 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLCISSQ+GC + C FCAT GF NL+S EI+ Q+ +A ++ N
Sbjct: 118 PEINRATLCISSQIGCALNCKFCATSYQGFNRNLNSYEIISQIWYAMKIINDRNNFKLKK 177
Query: 80 IRNVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I N+V MGMGEPL N LV A++ I+ F +S +RIT+ST GI I K L +
Sbjct: 178 ITNIVMMGMGEPLLNLKNLVPAIKIILDNYGFGLSKRRITISTAGISPVIKKL-GKLIDV 236
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +IMP + + ++ ++ + K+Y K ++ KI IEYIML+ +ND+
Sbjct: 237 KLAISLHAPNDIIRNKIMPINKKYNIKSILLSAKKYISTSKANKGKISIEYIMLNEINDK 296
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA+QL L+ +NLIP+NP V +++ S+ +K+++F KIL + I TT+RKQ
Sbjct: 297 TEHAYQLINCLKNIPCKINLIPWNPFPYV-KYKCSNFNKINNFYKIL-IKHGITTTIRKQ 354
Query: 256 MGQDISGACGQLVVNLPDKISAKS 279
G DI ACGQL N+ ++I+ ++
Sbjct: 355 RGIDIKAACGQLSGNVINRINKRN 378
>gi|121604771|ref|YP_982100.1| radical SAM protein [Polaromonas naphthalenivorans CJ2]
gi|205829800|sp|A1VNF1.1|RLMN_POLNA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120593740|gb|ABM37179.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas
naphthalenivorans CJ2]
Length = 382
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 115/264 (43%), Positives = 154/264 (58%), Gaps = 19/264 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLCISSQ GC +GC FC+TG GF NL++GEI+ QL A
Sbjct: 96 PETDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIISQLWFAEHFLRKHLGRNERV 155
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY+ L+ A+++M + +S +R+TVST G+V I++ D P +
Sbjct: 156 ISNVVMMGMGEPLQNYSQLLPALKVMLNDHGYGLSRRRVTVSTSGVVPMIDRLAKDCP-V 214
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P + +P+ +L+ A YQ + + I EY MLDGVND+ +
Sbjct: 215 ALAVSLHAPQDALRSNLVPLNKKYPIAELLEACTRYQSAAPRDFITFEYCMLDGVNDQPE 274
Query: 198 HAHQLGKLLET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL L++T NLIPFNP + R S +V +F KIL + I TTV
Sbjct: 275 HARQLVALMKTHAANGLSCKFNLIPFNPFPASGLLR-SDMPQVMAFAKILMDA-GIITTV 332
Query: 253 RKQMGQDISGACGQLVVNLPDKIS 276
RK G DI ACGQL ++ D+ S
Sbjct: 333 RKTRGDDIDAACGQLAGDVQDRTS 356
>gi|148359081|ref|YP_001250288.1| Cfr family transporter radical SAM protein [Legionella pneumophila
str. Corby]
gi|296107129|ref|YP_003618829.1| radical SAM protein [Legionella pneumophila 2300/99 Alcoy]
gi|205829782|sp|A5IC42.1|RLMN_LEGPC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|148280854|gb|ABQ54942.1| radical SAM enzyme, Cfr family [Legionella pneumophila str. Corby]
gi|295649030|gb|ADG24877.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99
Alcoy]
Length = 382
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 110/260 (42%), Positives = 163/260 (62%), Gaps = 16/260 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSN-------- 79
P R TLC+SSQVGC + C+FC+T GF NLS+ EI+ Q+ A+R LS+
Sbjct: 99 PEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGAHDKK 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A+ I M L + +S +R+T+ST G++ + + P +
Sbjct: 159 ITNVVMMGMGEPLLNFDNVVSAMSIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-V 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +
Sbjct: 218 ALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPE 277
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ-KILRGSYNIRTTVRKQM 256
HA QL KLL VNLIPFNP ++Q++ SS + + +F+ K+++ + I T RK
Sbjct: 278 HASQLIKLLHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLIK--HGINTITRKTR 334
Query: 257 GQDISGACGQLVVNLPDKIS 276
G DI ACGQL + DK +
Sbjct: 335 GDDIDAACGQLAGEVKDKTT 354
>gi|323453410|gb|EGB09282.1| hypothetical protein AURANDRAFT_12147, partial [Aureococcus
anophagefferens]
Length = 316
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 167/290 (57%), Gaps = 39/290 (13%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G VE V+MR+ G R R T+C+SSQVGC M C+FCATGTMG + +L+ G
Sbjct: 39 GKKVETVVMRH--------GTLRS--SRVTVCVSSQVGCAMRCSFCATGTMGMQGDLTRG 88
Query: 66 EIVEQLVHASRLS-NIRNVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVG 123
EIVEQ++ A + +RNVVFMGMGEPLNNY ++ A R ++ + R+T+STVG
Sbjct: 89 EIVEQVLLAKGVDGRLRNVVFMGMGEPLNNYDEVLGACRCLLDDRWLALGGGRVTISTVG 148
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK--------LMNALKEYQ 175
+V I +D P NLA+SLHAP QD R IMPAA+ + L+ + L+E +
Sbjct: 149 VVDRIRSLAADEPRANLALSLHAPTQDQRVAIMPAAKRYDLDDLLDALDAYVAEKLRELE 208
Query: 176 KNSQQK---------IFIEYIMLDGVNDEEQHAHQLGKLLETF--------QVVVNLIPF 218
+ +K I +EYI+L GVND A LGKL + +VNLI +
Sbjct: 209 RRGSRKRRNDEKQPLIMVEYILLGGVNDSVADADALGKLFSRAGAAPRFGGRAMVNLIAY 268
Query: 219 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 268
NP + R SD V++FQK ++ ++ + T VR MG D++GACGQL+
Sbjct: 269 NPTPDLPYDR-PSDAAVAAFQKAVQ-AHGVLTCVRITMGSDVAGACGQLL 316
>gi|332288518|ref|YP_004419370.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
anatis UMN179]
gi|330431414|gb|AEC16473.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
anatis UMN179]
Length = 372
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 157/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 98 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKVIGAFGETKVRP 157
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N + +V A+ IM + +S +R+T+ST G+V A++K ++ +
Sbjct: 158 ITNVVMMGMGEPLLNVSNVVPAMEIMLDDFGYGLSKRRVTLSTSGVVPALDKL-GEMIDV 216
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E LM+++ Y K S K+ IEY+MLD VNDE
Sbjct: 217 ALAISLHAPNDELRNEIVPLNKKYNIEMLMDSVNRYLKISNANHGKVTIEYVMLDHVNDE 276
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL K+L+ +NLIP+NP + + SS+ ++ FQK L Y VRK
Sbjct: 277 VEHAHQLAKVLKNTPCKINLIPWNPFPE-APYNKSSNTRIDRFQKTLM-EYGFTVIVRKT 334
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 335 RGDDIDAACGQLAGDVIDR 353
>gi|403059493|ref|YP_006647710.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|402806819|gb|AFR04457.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 418
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 144 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 203
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 204 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 262
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 263 ALAISLHAPTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 322
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 323 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 380
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 381 RGDDIDAACGQLAGEVVDR 399
>gi|227112689|ref|ZP_03826345.1| hypothetical protein PcarbP_06994 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 418
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 144 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 203
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 204 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 262
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 263 ALAISLHAPTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 322
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 323 TEHAHQLAECLKNTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 380
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 381 RGDDIDAACGQLAGEVVDR 399
>gi|340757467|ref|ZP_08694065.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
varium ATCC 27725]
gi|251834729|gb|EES63292.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
varium ATCC 27725]
Length = 350
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 159/277 (57%), Gaps = 20/277 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G +E V++R+ R+TLCISSQVGC + C FCATG GF NL
Sbjct: 88 EDGNTIETVLLRHKDK-------------RNTLCISSQVGCPVKCAFCATGQDGFVRNLD 134
Query: 64 SGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRI 117
EI+ Q+ R SNI N+VFMGMGEPL N + +++A+ I++ +S ++I
Sbjct: 135 VNEIINQVYTVERRLVKQGSNINNIVFMGMGEPLLNLSNVLKALDILSNENGINISKRKI 194
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+ST GIV I K + + LA+SLH+ + R I+P R++PLE L L+EYQ+
Sbjct: 195 TISTSGIVPNIEKILLEKLPIELAISLHSAINAKRDMIIPVNRSYPLEDLYAILQEYQRQ 254
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
++++I EYIM++ N + A+ L + F VVNLIP+NP+ ++F S+ K+
Sbjct: 255 TKRRISFEYIMINEFNVSDVDANALADFVHEFDHVVNLIPYNPVAG-TEFERPSEKKIEK 313
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
F L+ + T+R++ G DI GACGQL P K
Sbjct: 314 FFTFLKDVRKVNVTLRREKGTDIDGACGQLRQKAPKK 350
>gi|146312652|ref|YP_001177726.1| hypothetical protein Ent638_3011 [Enterobacter sp. 638]
gi|205829755|sp|A4WD95.1|RLMN_ENT38 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145319528|gb|ABP61675.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter sp. 638]
Length = 388
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y S Q ++ IEY+MLD VNDE
Sbjct: 233 ALAISLHAPNDEIRDEIVPVNKKYNIETFLAAVRRYLAKSNANQGRVTIEYVMLDHVNDE 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TDHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-DYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|227328680|ref|ZP_03832704.1| hypothetical protein PcarcW_15616 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 418
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 144 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 203
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 204 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 262
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 263 ALAISLHAPTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 322
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 323 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 380
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 381 RGDDIDAACGQLAGEVVDR 399
>gi|37521648|ref|NP_925025.1| hypothetical protein gll2079 [Gloeobacter violaceus PCC 7421]
gi|81709852|sp|Q7NIV3.1|RLMN_GLOVI RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|35212646|dbj|BAC90020.1| gll2079 [Gloeobacter violaceus PCC 7421]
Length = 348
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 151/241 (62%), Gaps = 5/241 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFM 86
P R T+C+SSQVGC M C FCATG GF NL EIV+Q+ V + +VVFM
Sbjct: 95 PAAERLTVCVSSQVGCPMACRFCATGQSGFARNLGVHEIVDQVLTVQEGFGRRVSHVVFM 154
Query: 87 GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
GMGEPL N A+V+A+R++ G + ++ITVSTVG+ I + + + LAVSLHA
Sbjct: 155 GMGEPLLNLGAVVQALRVLNG-DIGIGQRQITVSTVGVPGQIRRLGTYKLQITLAVSLHA 213
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
P QD+R +++P A+ +P+E+L+ ++Y + + +++ EY +L G+NDE HA +L +L
Sbjct: 214 PNQDLRLKLIPTAQHYPIEELLEDCRDYVETTNRRVSFEYTLLAGINDEPHHARELAAIL 273
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
FQ VNLIP+NPI V ++ + +V +F++ L + I +VR G + + ACGQ
Sbjct: 274 RGFQSHVNLIPYNPIEGV-EYERPGEARVRAFERELV-RHKIAASVRHTRGLEEAAACGQ 331
Query: 267 L 267
L
Sbjct: 332 L 332
>gi|19703861|ref|NP_603423.1| florfenicol resistance protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|81590892|sp|Q8RFZ9.1|RLMN_FUSNN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|19714019|gb|AAL94722.1| Florfenicol resistance protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 358
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 157/273 (57%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++GG +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDGGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R N+ N+VFMGMGEPL N L +A+ I++ +S
Sbjct: 138 NLSVSEILNQIYTVERRLRKKGENLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPINKNFPLEDLSAVLIEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGAEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ F L+ + T+R++ G DI GACGQL
Sbjct: 317 INKFYIYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|451823104|ref|YP_007459378.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451775904|gb|AGF46945.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 371
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 162/290 (55%), Gaps = 36/290 (12%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D NG +E V++ P R TLCISSQ GC + C+FC TG GF
Sbjct: 85 FDVGNGNAIETVLI--------------PDIDRYTLCISSQAGCAVNCSFCYTGQQGFNR 130
Query: 61 NLSSGEIVEQLVHASR-----------------LSNIRNVVFMGMGEPLNNYAALVEAVR 103
NL++ EI+ QL A + S I NVV MGMGEPL NY ++ A+R
Sbjct: 131 NLTTNEIISQLWWAQKSINDKFPKNNIQDDSLAASKITNVVMMGMGEPLLNYGQVIPALR 190
Query: 104 IMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 162
+M + +S +RIT+ST GIV I+K D P ++LAVSLHAP +R ++MP + +
Sbjct: 191 LMMDDNAYSLSRRRITLSTSGIVPMIDKMAQDCP-VSLAVSLHAPNNSLRNKLMPINKKY 249
Query: 163 PLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 221
PLE+L+ + K Y + + + EY ML+ +ND + HA +L +L+ + VNLIPFN
Sbjct: 250 PLEELIKSCKNYVSRAPRDFVTFEYCMLENINDNDDHAVELIELISVLKCKVNLIPFNSF 309
Query: 222 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 271
S S + SS +++ SF KIL S I TT+RK G DI ACGQL N+
Sbjct: 310 PS-SNLKRSSLNRILSFAKILNDS-GIITTIRKTRGDDILAACGQLAGNV 357
>gi|429745119|ref|ZP_19278562.1| 23S rRNA methyltransferase [Neisseria sp. oral taxon 020 str.
F0370]
gi|429161326|gb|EKY03743.1| 23S rRNA methyltransferase [Neisseria sp. oral taxon 020 str.
F0370]
Length = 362
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/256 (43%), Positives = 155/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTTAEIIGQLWWANKALGATPKDERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL NY +V A+ +M + +S +R+TVST G+V +++ D+P +
Sbjct: 156 SNVVMMGMGEPLANYENVVRALSVMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA VR QI+P + +PL++LM A + Y K + + EY+MLDG+ND+ +H
Sbjct: 215 LAVSLHASNDAVRDQIVPLNKKYPLKELMGACRRYLVKAPRDFVTFEYVMLDGINDKVEH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L KL+E NLIPFNP + S + SS + + F+ IL+ + + TVRK G
Sbjct: 275 ARELLKLVEDVPCKFNLIPFNPFPN-SGYDRSSAENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVKDK 348
>gi|358010804|ref|ZP_09142614.1| UPF0063 protein yfgB [Acinetobacter sp. P8-3-8]
Length = 411
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 163/261 (62%), Gaps = 20/261 (7%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL-----------VHASRLSN 79
G R TLCISSQVGC + C+FC+TG GF+ +L+ EI+ QL A R +
Sbjct: 132 GLRKTLCISSQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWVANYSYMEDVAVAERERS 191
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL NY A++ ++ IM + +S +R+T+ST G+V I++ D+ +
Sbjct: 192 VTNVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDI-DV 250
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVN 193
LA+SLHAP ++R +++P + +PLE+L+ A + Y ++S++ + IEY+ML+GVN
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLEQLIAACQRYIGKDGNESSRKHVTIEYVMLEGVN 310
Query: 194 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253
D+ +HA Q+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R
Sbjct: 311 DQPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIR 368
Query: 254 KQMGQDISGACGQLVVNLPDK 274
+ G DI ACGQLV + D+
Sbjct: 369 QTRGDDIDAACGQLVGQVADR 389
>gi|416787465|ref|ZP_11879529.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. 493-89]
gi|416799095|ref|ZP_11884444.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. H 2687]
gi|420281761|ref|ZP_14783997.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW06591]
gi|425268347|ref|ZP_18659985.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5412]
gi|209763358|gb|ACI79991.1| hypothetical protein ECs3379 [Escherichia coli]
gi|320646304|gb|EFX15231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. 493-89]
gi|320651809|gb|EFX20189.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. H 2687]
gi|390781098|gb|EIO48787.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW06591]
gi|408182466|gb|EKI08972.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5412]
Length = 384
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP + R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPAAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|317485889|ref|ZP_07944749.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6]
gi|316922863|gb|EFV44089.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6]
Length = 404
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/276 (42%), Positives = 163/276 (59%), Gaps = 27/276 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G VE VI+ S G+ G R C+SSQ+GC MGC FC+TGTMGF N++
Sbjct: 132 RDGALVETVIL---PSTGQ------DGSVRIAQCVSSQIGCAMGCTFCSTGTMGFIRNMT 182
Query: 64 SGEIVEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQV 112
+GEI+ Q LV RL + IRN+VFMGMGEPL N A+ ++ G+ F
Sbjct: 183 AGEILSQVLVARMRLGDNRIDHPIIRNLVFMGMGEPLLNLRETTRALEMLNHDKGMDF-- 240
Query: 113 SPKRITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
SP+RITVST GI + + GL LAVSLHAP QD+R +IMP A + L+ LM L
Sbjct: 241 SPRRITVSTCGIKAGLRELGDS--GLAFLAVSLHAPNQDLRAKIMPKAANWHLDDLMATL 298
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
+ Y +++ I EY++L GVND+ +HA +L KL+ + +NLI +NP ++ +
Sbjct: 299 ESYPLKTREHITFEYLLLGGVNDQPEHARELAKLVSRVKGKLNLIAYNP-SETQLYKAPT 357
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ + +F+KIL S + +RK GQDI ACGQL
Sbjct: 358 EADILAFEKIL-WSKGVTAILRKSKGQDIKAACGQL 392
>gi|419076554|ref|ZP_13622068.1| 23S rRNA methyltransferase [Escherichia coli DEC3F]
gi|377920951|gb|EHU84965.1| 23S rRNA methyltransferase [Escherichia coli DEC3F]
Length = 336
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 62 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 121
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 122 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 180
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 181 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 240
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP + R SS+ ++ F K+L SY T VRK
Sbjct: 241 TEHAHQLAELLKDTPCKINLIPWNPFPAAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 298
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 299 RGDDIDAACGQLAGDVIDR 317
>gi|329767014|ref|ZP_08258542.1| ribosomal RNA large subunit methyltransferase N [Gemella
haemolysans M341]
gi|328837739|gb|EGF87364.1| ribosomal RNA large subunit methyltransferase N [Gemella
haemolysans M341]
Length = 377
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 153/240 (63%), Gaps = 8/240 (3%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-----SRLSNIRNVVFMGM 88
++LC+++QVGC++GC FCA+ G K NL +GEIV Q++ + I ++V MG+
Sbjct: 119 NSLCVTTQVGCRIGCTFCASTLGGLKRNLDAGEIVSQVLKVQQELDKKGERISSIVIMGI 178
Query: 89 GEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEP NY +++ +RI+ + F + + ITVST GIV I F ++ +N AVSLHAP
Sbjct: 179 GEPFENYDEMMDFIRIVNSDESFNIGARHITVSTSGIVPKIYDFANEKVQINFAVSLHAP 238
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
++R +IMP RA+ ++KLM ALK YQ+ + ++I EY ++ VND+++HA +L ++++
Sbjct: 239 TNELRSKIMPVNRAYNIDKLMEALKYYQETTNRRITFEYGLMGKVNDQKEHAEKLSEIIK 298
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLIP N + + RTS D + +F+KIL+ + + T+R+ G DI ACGQL
Sbjct: 299 GLNCHVNLIPINYVPERNYVRTSKSD-IFAFEKILKKN-KVNVTIRRTQGDDIDAACGQL 356
>gi|429087664|ref|ZP_19150396.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
universalis NCTC 9529]
gi|426507467|emb|CCK15508.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
universalis NCTC 9529]
Length = 388
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E ++A++ Y S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLSAVRRYLDKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|21672555|ref|NP_660622.1| hypothetical protein BUsg275 [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25091617|sp|Q8K9P5.1|RLMN_BUCAP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|21623181|gb|AAM67833.1| hypothetical 43.1 kDa protein [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 363
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 158/258 (61%), Gaps = 14/258 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------SNIR 81
P R+TLC+SSQ+GC + C FCATG GF NL EI+ Q+ A+++ S I
Sbjct: 107 PEKKRATLCVSSQIGCSLKCKFCATGQQGFNRNLKVSEIISQIWQANKILKEKKNNSTIT 166
Query: 82 NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNL 140
N+VFMGMGEPL N ++ A++I+ F +S +RIT+ST GIV A+NK + ++L
Sbjct: 167 NIVFMGMGEPLLNLNNVISAIKIILDKNGFGLSKRRITLSTSGIVPALNKLIKKID-VSL 225
Query: 141 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQ 197
A+SLHAP +R IMP + ++ +N++ +Y K+S + +EY+ML G+ND +
Sbjct: 226 AISLHAPNDFIRNSIMPINMKYNIKSFLNSVSKYLKHSHANRGGVTVEYVMLRGINDLNE 285
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA +LG +L+ +NLIP+N + + F SS ++++ F ILR TT+RK G
Sbjct: 286 HAEELGNILKKIPSKINLIPWNFFKN-ANFICSSKNRINIFANILRKK-GFNTTIRKNRG 343
Query: 258 QDISGACGQLVVNLPDKI 275
QDI ACGQL ++ ++I
Sbjct: 344 QDIGAACGQLTGDIVNRI 361
>gi|402836995|ref|ZP_10885526.1| 23S rRNA m2A2503 methyltransferase [Mogibacterium sp. CM50]
gi|402270011|gb|EJU19280.1| 23S rRNA m2A2503 methyltransferase [Mogibacterium sp. CM50]
Length = 346
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 160/266 (60%), Gaps = 19/266 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VEAV M+Y+ +++CISSQVGC+MGC+FCA+ G +L+
Sbjct: 94 DGARVEAVYMKYNYG--------------NSICISSQVGCRMGCSFCASTRKGLDRSLTG 139
Query: 65 GEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 121
GE++ Q++ RL +I +VV MG+GEP +NY L + + ++ + + + ITVST
Sbjct: 140 GEMLAQVLKMRRLIGEDIGHVVIMGIGEPFDNYEGLSKFISLINSKQGYNLGMRNITVST 199
Query: 122 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181
G+V I +F D P +NLAVSLHAP D+R + MP AR + E L+ A + Y ++++++
Sbjct: 200 CGLVPMIEQFGKDFPQVNLAVSLHAPNDDIRRRTMPIARRYAYEDLITACRTYTESTKRR 259
Query: 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241
I EY ++DGVND+ +HA +L L+ + VNLIP N + + TS+ + V SF
Sbjct: 260 ITFEYALIDGVNDQREHALELAGHLKGWLTHVNLIPLNEVDGTG-YLTSNRETVRSFAWT 318
Query: 242 LRGSYNIRTTVRKQMGQDISGACGQL 267
L ++I +VR+ +G DI ACGQL
Sbjct: 319 LE-EHSIAVSVRRTLGTDIDAACGQL 343
>gi|194432102|ref|ZP_03064391.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
gi|417673263|ref|ZP_12322718.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
gi|194419631|gb|EDX35711.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
gi|332089738|gb|EGI94839.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
Length = 384
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP + + SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPG-APYERSSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|365108779|ref|ZP_09336577.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii 4_7_47CFAA]
gi|363640248|gb|EHL79739.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii 4_7_47CFAA]
Length = 336
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 62 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKATGVRP 121
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 122 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 180
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD +ND
Sbjct: 181 ALAISLHAPNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDG 240
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 241 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 298
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 299 RGDDIDAACGQLAGDVIDR 317
>gi|262371087|ref|ZP_06064409.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046]
gi|381197790|ref|ZP_09905129.1| putative Fe-S-cluster redox enzyme [Acinetobacter lwoffii WJ10621]
gi|262313973|gb|EEY95018.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046]
Length = 411
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 163/261 (62%), Gaps = 20/261 (7%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSN 79
G R TLCISSQVGC + C+FC+TG GF+ +L+ EI+ QL A+ R +
Sbjct: 132 GLRRTLCISSQVGCALDCSFCSTGKQGFQRDLNPDEIIGQLWVANYSYMEDVPVAERERS 191
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL NY A++ ++RIM + +S +R+T+ST G+V I++ D+ +
Sbjct: 192 VTNVVMMGMGEPLLNYDAVLSSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDI-DV 250
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVN 193
LA+SLHAP ++R +++P + +PL +L+ A + Y +++++ + IEY+MLDGVN
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLDGVN 310
Query: 194 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253
D +HA Q+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R
Sbjct: 311 DHPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIR 368
Query: 254 KQMGQDISGACGQLVVNLPDK 274
+ G DI ACGQLV + D+
Sbjct: 369 QTRGDDIDAACGQLVGQVADR 389
>gi|429105680|ref|ZP_19167549.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 681]
gi|429111265|ref|ZP_19173035.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 507]
gi|426292403|emb|CCJ93662.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 681]
gi|426312422|emb|CCJ99148.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 507]
Length = 388
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E ++A++ Y S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLSAVRRYLDKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|291514720|emb|CBK63930.1| 23S rRNA m(2)A-2503 methyltransferase [Alistipes shahii WAL 8301]
Length = 342
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 148/244 (60%), Gaps = 4/244 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P G R+TLC+SSQ GC+MGC FCATG G + +L++ EI+ Q V + N+VFMGM
Sbjct: 98 PDGERATLCVSSQAGCRMGCRFCATGRQGLQQSLTAAEILNQAVSLPERDKLTNLVFMGM 157
Query: 89 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEPL+N ++ A+ I+T F SP RIT+ST G+V + +F D ++LAVSLH P
Sbjct: 158 GEPLDNTDEVLRALEIITAEWGFGWSPTRITLSTAGVVPELRRF-LDATKVHLAVSLHNP 216
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
+ R +IMP RA+P+ ++ L+EY Q+++ EYI++ G+ND +H +L +LL
Sbjct: 217 FHEERMEIMPVERAWPIAEVAAILREYDFTHQRRVSFEYIVMSGLNDSPRHIRELTRLLN 276
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +NLI F+ I F + D+ + F+ L + I+TT+R G+DI ACG L
Sbjct: 277 GIKCRINLIRFHRIPDSPYF-SPGDEAMVRFRDAL-TARGIQTTIRASRGEDIQAACGLL 334
Query: 268 VVNL 271
L
Sbjct: 335 STRL 338
>gi|15832633|ref|NP_311406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. Sakai]
gi|168748424|ref|ZP_02773446.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4113]
gi|168756289|ref|ZP_02781296.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4401]
gi|168761127|ref|ZP_02786134.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4501]
gi|168768609|ref|ZP_02793616.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4486]
gi|168773569|ref|ZP_02798576.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4196]
gi|168778483|ref|ZP_02803490.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4076]
gi|168787863|ref|ZP_02812870.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC869]
gi|168798888|ref|ZP_02823895.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC508]
gi|195936659|ref|ZP_03082041.1| hypothetical protein EscherichcoliO157_09385 [Escherichia coli
O157:H7 str. EC4024]
gi|208808631|ref|ZP_03250968.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4206]
gi|208814380|ref|ZP_03255709.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4045]
gi|208820776|ref|ZP_03261096.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4042]
gi|209400754|ref|YP_002271987.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC4115]
gi|217327135|ref|ZP_03443218.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
TW14588]
gi|254794463|ref|YP_003079300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. TW14359]
gi|261223051|ref|ZP_05937332.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK2000]
gi|261259398|ref|ZP_05951931.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK966]
gi|291283738|ref|YP_003500556.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
CB9615]
gi|387507882|ref|YP_006160138.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. RM12579]
gi|387883711|ref|YP_006314013.1| hypothetical protein CDCO157_3146 [Escherichia coli Xuzhou21]
gi|416310003|ref|ZP_11656202.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1044]
gi|416321670|ref|ZP_11663518.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC1212]
gi|416329944|ref|ZP_11669071.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1125]
gi|416775881|ref|ZP_11874617.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. G5101]
gi|416809527|ref|ZP_11889129.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. 3256-97]
gi|416820198|ref|ZP_11893687.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. USDA 5905]
gi|416831018|ref|ZP_11898977.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. LSU-61]
gi|419046194|ref|ZP_13593131.1| 23S rRNA methyltransferase [Escherichia coli DEC3A]
gi|419052228|ref|ZP_13599099.1| 23S rRNA methyltransferase [Escherichia coli DEC3B]
gi|419058263|ref|ZP_13605068.1| 23S rRNA methyltransferase [Escherichia coli DEC3C]
gi|419063730|ref|ZP_13610457.1| 23S rRNA methyltransferase [Escherichia coli DEC3D]
gi|419070628|ref|ZP_13616249.1| 23S rRNA methyltransferase [Escherichia coli DEC3E]
gi|419081709|ref|ZP_13627157.1| 23S rRNA methyltransferase [Escherichia coli DEC4A]
gi|419087564|ref|ZP_13632920.1| 23S rRNA methyltransferase [Escherichia coli DEC4B]
gi|419093455|ref|ZP_13638740.1| 23S rRNA methyltransferase [Escherichia coli DEC4C]
gi|419099354|ref|ZP_13644551.1| 23S rRNA methyltransferase [Escherichia coli DEC4D]
gi|419105081|ref|ZP_13650210.1| 23S rRNA methyltransferase [Escherichia coli DEC4E]
gi|419110541|ref|ZP_13655597.1| 23S rRNA methyltransferase [Escherichia coli DEC4F]
gi|419115900|ref|ZP_13660916.1| 23S rRNA methyltransferase [Escherichia coli DEC5A]
gi|419121471|ref|ZP_13666427.1| 23S rRNA methyltransferase [Escherichia coli DEC5B]
gi|419126965|ref|ZP_13671849.1| 23S rRNA methyltransferase [Escherichia coli DEC5C]
gi|419132531|ref|ZP_13677368.1| 23S rRNA methyltransferase [Escherichia coli DEC5D]
gi|419137567|ref|ZP_13682362.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC5E]
gi|420270560|ref|ZP_14772918.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA22]
gi|420276519|ref|ZP_14778803.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA40]
gi|420287930|ref|ZP_14790116.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10246]
gi|420293547|ref|ZP_14795663.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW11039]
gi|420299389|ref|ZP_14801438.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09109]
gi|420305342|ref|ZP_14807336.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10119]
gi|420310397|ref|ZP_14812330.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1738]
gi|420316262|ref|ZP_14818137.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1734]
gi|421813504|ref|ZP_16249222.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0416]
gi|421819319|ref|ZP_16254815.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0821]
gi|421825313|ref|ZP_16260671.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK920]
gi|421832046|ref|ZP_16267333.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA7]
gi|423726228|ref|ZP_17700289.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA31]
gi|424078605|ref|ZP_17815596.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA505]
gi|424085070|ref|ZP_17821573.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA517]
gi|424091479|ref|ZP_17827424.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1996]
gi|424098101|ref|ZP_17833423.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1985]
gi|424104334|ref|ZP_17839115.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1990]
gi|424111006|ref|ZP_17845250.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93-001]
gi|424116945|ref|ZP_17850793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA3]
gi|424123127|ref|ZP_17856458.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA5]
gi|424129291|ref|ZP_17862207.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA9]
gi|424135565|ref|ZP_17868037.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA10]
gi|424142130|ref|ZP_17874026.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA14]
gi|424148560|ref|ZP_17879944.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA15]
gi|424154377|ref|ZP_17885341.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA24]
gi|424250489|ref|ZP_17890904.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA25]
gi|424328684|ref|ZP_17896816.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA28]
gi|424450811|ref|ZP_17902526.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA32]
gi|424457011|ref|ZP_17908157.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA33]
gi|424463448|ref|ZP_17913896.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA39]
gi|424469788|ref|ZP_17919621.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA41]
gi|424476313|ref|ZP_17925638.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA42]
gi|424482066|ref|ZP_17931056.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW07945]
gi|424488226|ref|ZP_17936803.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09098]
gi|424494790|ref|ZP_17942525.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09195]
gi|424501596|ref|ZP_17948502.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4203]
gi|424507843|ref|ZP_17954248.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4196]
gi|424515164|ref|ZP_17959858.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14313]
gi|424521384|ref|ZP_17965521.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14301]
gi|424527277|ref|ZP_17971002.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4421]
gi|424533425|ref|ZP_17976784.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4422]
gi|424539525|ref|ZP_17982477.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4013]
gi|424545576|ref|ZP_17987991.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4402]
gi|424551816|ref|ZP_17993684.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4439]
gi|424558002|ref|ZP_17999428.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4436]
gi|424564348|ref|ZP_18005358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4437]
gi|424570481|ref|ZP_18011044.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4448]
gi|424576628|ref|ZP_18016712.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1845]
gi|424582467|ref|ZP_18022121.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1863]
gi|425099174|ref|ZP_18501913.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4870]
gi|425105233|ref|ZP_18507559.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5.2239]
gi|425111248|ref|ZP_18513175.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
6.0172]
gi|425127173|ref|ZP_18528350.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0586]
gi|425132906|ref|ZP_18533763.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.2524]
gi|425139413|ref|ZP_18539802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0833]
gi|425145207|ref|ZP_18545209.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0869]
gi|425151316|ref|ZP_18550937.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.0221]
gi|425157179|ref|ZP_18556452.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA34]
gi|425163538|ref|ZP_18562433.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA506]
gi|425169278|ref|ZP_18567762.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA507]
gi|425175343|ref|ZP_18573472.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA504]
gi|425181370|ref|ZP_18579076.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1999]
gi|425187640|ref|ZP_18584923.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1997]
gi|425194412|ref|ZP_18591191.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE1487]
gi|425200888|ref|ZP_18597106.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE037]
gi|425207270|ref|ZP_18603079.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK2001]
gi|425213029|ref|ZP_18608439.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA4]
gi|425219149|ref|ZP_18614126.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA23]
gi|425225699|ref|ZP_18620176.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA49]
gi|425231963|ref|ZP_18626012.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA45]
gi|425237882|ref|ZP_18631611.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TT12B]
gi|425244097|ref|ZP_18637415.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
MA6]
gi|425250261|ref|ZP_18643207.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5905]
gi|425256090|ref|ZP_18648618.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CB7326]
gi|425262350|ref|ZP_18654367.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC96038]
gi|425295781|ref|ZP_18685992.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA38]
gi|425312487|ref|ZP_18701680.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1735]
gi|425318481|ref|ZP_18707279.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1736]
gi|425324549|ref|ZP_18712927.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1737]
gi|425330914|ref|ZP_18718779.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1846]
gi|425337090|ref|ZP_18724472.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1847]
gi|425343432|ref|ZP_18730331.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1848]
gi|425349241|ref|ZP_18735718.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1849]
gi|425355535|ref|ZP_18741610.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1850]
gi|425361498|ref|ZP_18747155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1856]
gi|425367680|ref|ZP_18752850.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1862]
gi|425374030|ref|ZP_18758680.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1864]
gi|425386919|ref|ZP_18770485.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1866]
gi|425393606|ref|ZP_18776721.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1868]
gi|425399705|ref|ZP_18782419.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1869]
gi|425405794|ref|ZP_18788025.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1870]
gi|425412184|ref|ZP_18793955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE098]
gi|425418505|ref|ZP_18799784.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK523]
gi|425429766|ref|ZP_18810386.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1304]
gi|428948186|ref|ZP_19020480.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1467]
gi|428954282|ref|ZP_19026091.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1042]
gi|428960247|ref|ZP_19031565.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
89.0511]
gi|428966871|ref|ZP_19037600.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0091]
gi|428972560|ref|ZP_19042911.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0039]
gi|428979099|ref|ZP_19048935.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.2281]
gi|428984910|ref|ZP_19054316.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0055]
gi|428990995|ref|ZP_19059996.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0056]
gi|428996861|ref|ZP_19065470.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
94.0618]
gi|429003107|ref|ZP_19071244.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0183]
gi|429009192|ref|ZP_19076719.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.1288]
gi|429015721|ref|ZP_19082626.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0943]
gi|429021557|ref|ZP_19088092.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0428]
gi|429027654|ref|ZP_19093669.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0427]
gi|429033842|ref|ZP_19099378.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0939]
gi|429039900|ref|ZP_19105021.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0932]
gi|429045761|ref|ZP_19110487.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0107]
gi|429051230|ref|ZP_19115801.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0003]
gi|429056604|ref|ZP_19120930.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.1742]
gi|429062101|ref|ZP_19126128.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0007]
gi|429068376|ref|ZP_19131854.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0672]
gi|429074324|ref|ZP_19137580.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0678]
gi|429079518|ref|ZP_19142658.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0713]
gi|429827534|ref|ZP_19358588.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0109]
gi|429833895|ref|ZP_19364257.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0010]
gi|444926069|ref|ZP_21245372.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
09BKT078844]
gi|444931779|ref|ZP_21250824.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0814]
gi|444937229|ref|ZP_21256010.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0815]
gi|444942860|ref|ZP_21261382.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0816]
gi|444948272|ref|ZP_21266587.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0839]
gi|444953888|ref|ZP_21271988.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0848]
gi|444959413|ref|ZP_21277270.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1753]
gi|444966218|ref|ZP_21283760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1775]
gi|444970544|ref|ZP_21287911.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1793]
gi|444975832|ref|ZP_21292960.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1805]
gi|444981215|ref|ZP_21298131.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ATCC 700728]
gi|444986610|ref|ZP_21303395.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA11]
gi|444991925|ref|ZP_21308572.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA19]
gi|444997231|ref|ZP_21313733.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA13]
gi|445002808|ref|ZP_21319201.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA2]
gi|445008246|ref|ZP_21324489.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA47]
gi|445013341|ref|ZP_21329452.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA48]
gi|445019206|ref|ZP_21335175.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA8]
gi|445024662|ref|ZP_21340490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
7.1982]
gi|445029997|ref|ZP_21345676.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1781]
gi|445035465|ref|ZP_21351001.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1762]
gi|445041089|ref|ZP_21356466.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA35]
gi|445046312|ref|ZP_21361567.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4880]
gi|445051831|ref|ZP_21366882.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0083]
gi|445057603|ref|ZP_21372465.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0670]
gi|452971706|ref|ZP_21969933.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC4009]
gi|205829862|sp|Q8XAA4.3|RLMN_ECO57 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807175|sp|B5Z0Y6.1|RLMN_ECO5E RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|13362849|dbj|BAB36802.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187770632|gb|EDU34476.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4196]
gi|188017093|gb|EDU55215.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4113]
gi|189003147|gb|EDU72133.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4076]
gi|189356574|gb|EDU74993.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4401]
gi|189362276|gb|EDU80695.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4486]
gi|189368421|gb|EDU86837.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4501]
gi|189372335|gb|EDU90751.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC869]
gi|189378598|gb|EDU97014.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC508]
gi|208728432|gb|EDZ78033.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4206]
gi|208735657|gb|EDZ84344.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4045]
gi|208740899|gb|EDZ88581.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4042]
gi|209162154|gb|ACI39587.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4115]
gi|209763360|gb|ACI79992.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763362|gb|ACI79993.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763364|gb|ACI79994.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763366|gb|ACI79995.1| hypothetical protein ECs3379 [Escherichia coli]
gi|217319502|gb|EEC27927.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
TW14588]
gi|254593863|gb|ACT73224.1| predicted enzyme [Escherichia coli O157:H7 str. TW14359]
gi|290763611|gb|ADD57572.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
CB9615]
gi|320188850|gb|EFW63509.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC1212]
gi|320640861|gb|EFX10349.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. G5101]
gi|320657195|gb|EFX25004.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320662801|gb|EFX30133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. USDA 5905]
gi|320667605|gb|EFX34520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. LSU-61]
gi|326340315|gb|EGD64119.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1125]
gi|326344999|gb|EGD68743.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1044]
gi|374359876|gb|AEZ41583.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. RM12579]
gi|377892857|gb|EHU57297.1| 23S rRNA methyltransferase [Escherichia coli DEC3B]
gi|377893024|gb|EHU57463.1| 23S rRNA methyltransferase [Escherichia coli DEC3A]
gi|377904850|gb|EHU69128.1| 23S rRNA methyltransferase [Escherichia coli DEC3C]
gi|377909370|gb|EHU73572.1| 23S rRNA methyltransferase [Escherichia coli DEC3D]
gi|377911602|gb|EHU75771.1| 23S rRNA methyltransferase [Escherichia coli DEC3E]
gi|377926339|gb|EHU90274.1| 23S rRNA methyltransferase [Escherichia coli DEC4A]
gi|377929819|gb|EHU93707.1| 23S rRNA methyltransferase [Escherichia coli DEC4B]
gi|377941470|gb|EHV05210.1| 23S rRNA methyltransferase [Escherichia coli DEC4D]
gi|377941897|gb|EHV05634.1| 23S rRNA methyltransferase [Escherichia coli DEC4C]
gi|377947564|gb|EHV11231.1| 23S rRNA methyltransferase [Escherichia coli DEC4E]
gi|377956797|gb|EHV20340.1| 23S rRNA methyltransferase [Escherichia coli DEC4F]
gi|377960009|gb|EHV23500.1| 23S rRNA methyltransferase [Escherichia coli DEC5A]
gi|377966695|gb|EHV30106.1| 23S rRNA methyltransferase [Escherichia coli DEC5B]
gi|377974021|gb|EHV37350.1| 23S rRNA methyltransferase [Escherichia coli DEC5C]
gi|377975494|gb|EHV38815.1| 23S rRNA methyltransferase [Escherichia coli DEC5D]
gi|377983984|gb|EHV47225.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC5E]
gi|386797169|gb|AFJ30203.1| hypothetical protein CDCO157_3146 [Escherichia coli Xuzhou21]
gi|390641137|gb|EIN20569.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1996]
gi|390642796|gb|EIN22185.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA517]
gi|390643584|gb|EIN22923.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA505]
gi|390659994|gb|EIN37731.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93-001]
gi|390661281|gb|EIN38940.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1985]
gi|390663150|gb|EIN40675.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1990]
gi|390676911|gb|EIN52989.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA3]
gi|390680262|gb|EIN56117.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA5]
gi|390683370|gb|EIN59066.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA9]
gi|390695826|gb|EIN70337.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA10]
gi|390700278|gb|EIN74589.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA15]
gi|390700773|gb|EIN75054.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA14]
gi|390714072|gb|EIN86986.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA22]
gi|390722140|gb|EIN94829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA25]
gi|390723591|gb|EIN96179.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA24]
gi|390726602|gb|EIN99040.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA28]
gi|390741778|gb|EIO12832.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA31]
gi|390742188|gb|EIO13204.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA32]
gi|390744873|gb|EIO15714.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA33]
gi|390757929|gb|EIO27399.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA40]
gi|390766958|gb|EIO36067.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA41]
gi|390768085|gb|EIO37133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA39]
gi|390768492|gb|EIO37523.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA42]
gi|390789669|gb|EIO57118.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10246]
gi|390789917|gb|EIO57346.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW07945]
gi|390795870|gb|EIO63147.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW11039]
gi|390805318|gb|EIO72265.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09098]
gi|390807084|gb|EIO73986.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09109]
gi|390815647|gb|EIO82175.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10119]
gi|390825447|gb|EIO91366.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4203]
gi|390830043|gb|EIO95620.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09195]
gi|390830323|gb|EIO95870.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4196]
gi|390845594|gb|EIP09222.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14301]
gi|390845920|gb|EIP09540.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14313]
gi|390850195|gb|EIP13583.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4421]
gi|390860947|gb|EIP23229.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4422]
gi|390864877|gb|EIP26946.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4013]
gi|390870141|gb|EIP31700.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4402]
gi|390878151|gb|EIP39026.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4439]
gi|390883252|gb|EIP43694.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4436]
gi|390892968|gb|EIP52538.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4437]
gi|390895493|gb|EIP54958.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4448]
gi|390899676|gb|EIP58912.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1738]
gi|390907626|gb|EIP66479.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1734]
gi|390918711|gb|EIP77100.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1863]
gi|390919983|gb|EIP78303.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1845]
gi|408064418|gb|EKG98900.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA7]
gi|408066327|gb|EKH00786.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK920]
gi|408069884|gb|EKH04266.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA34]
gi|408079126|gb|EKH13254.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA506]
gi|408082592|gb|EKH16558.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA507]
gi|408091003|gb|EKH24240.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA504]
gi|408097395|gb|EKH30294.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1999]
gi|408103694|gb|EKH36024.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1997]
gi|408108272|gb|EKH40289.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE1487]
gi|408114578|gb|EKH46104.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE037]
gi|408120612|gb|EKH51588.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK2001]
gi|408127157|gb|EKH57661.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA4]
gi|408137512|gb|EKH67213.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA23]
gi|408139658|gb|EKH69255.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA49]
gi|408145800|gb|EKH74950.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA45]
gi|408154833|gb|EKH83163.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TT12B]
gi|408159595|gb|EKH87648.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
MA6]
gi|408163444|gb|EKH91310.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5905]
gi|408173198|gb|EKI00244.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CB7326]
gi|408179707|gb|EKI06361.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC96038]
gi|408217248|gb|EKI41524.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA38]
gi|408226812|gb|EKI50436.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1735]
gi|408238066|gb|EKI60901.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1736]
gi|408241903|gb|EKI64508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1737]
gi|408246285|gb|EKI68583.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1846]
gi|408255119|gb|EKI76582.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1847]
gi|408258550|gb|EKI79810.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1848]
gi|408265069|gb|EKI85824.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1849]
gi|408273788|gb|EKI93828.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1850]
gi|408276720|gb|EKI96604.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1856]
gi|408285847|gb|EKJ04830.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1862]
gi|408290654|gb|EKJ09358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1864]
gi|408307381|gb|EKJ24722.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1868]
gi|408307662|gb|EKJ24991.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1866]
gi|408318662|gb|EKJ34865.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1869]
gi|408324647|gb|EKJ40573.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1870]
gi|408325783|gb|EKJ41628.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE098]
gi|408336060|gb|EKJ50859.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK523]
gi|408345977|gb|EKJ60288.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1304]
gi|408549146|gb|EKK26508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4870]
gi|408549414|gb|EKK26775.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5.2239]
gi|408550426|gb|EKK27755.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
6.0172]
gi|408568610|gb|EKK44639.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0586]
gi|408578467|gb|EKK53985.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0833]
gi|408580912|gb|EKK56285.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.2524]
gi|408590986|gb|EKK65438.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0869]
gi|408596065|gb|EKK70257.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.0221]
gi|408600699|gb|EKK74532.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0416]
gi|408612240|gb|EKK85585.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0821]
gi|427204361|gb|EKV74638.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1042]
gi|427206414|gb|EKV76627.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
89.0511]
gi|427208158|gb|EKV78295.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1467]
gi|427220501|gb|EKV89421.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0091]
gi|427223956|gb|EKV92681.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.2281]
gi|427227705|gb|EKV96236.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0039]
gi|427241486|gb|EKW08917.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0056]
gi|427242015|gb|EKW09434.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0055]
gi|427245645|gb|EKW12926.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
94.0618]
gi|427260560|gb|EKW26543.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0183]
gi|427261065|gb|EKW27015.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0943]
gi|427264277|gb|EKW29967.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.1288]
gi|427276138|gb|EKW40717.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0428]
gi|427278860|gb|EKW43315.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0427]
gi|427282992|gb|EKW47230.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0939]
gi|427291472|gb|EKW54874.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0932]
gi|427298976|gb|EKW61966.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0107]
gi|427300130|gb|EKW63082.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0003]
gi|427311965|gb|EKW74135.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.1742]
gi|427315043|gb|EKW77058.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0007]
gi|427319322|gb|EKW81144.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0672]
gi|427327390|gb|EKW88779.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0678]
gi|427328850|gb|EKW90201.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0713]
gi|429253334|gb|EKY37824.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0109]
gi|429254905|gb|EKY39262.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0010]
gi|444537779|gb|ELV17688.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0814]
gi|444539340|gb|ELV19106.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
09BKT078844]
gi|444547149|gb|ELV25777.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0815]
gi|444556973|gb|ELV34338.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0839]
gi|444557764|gb|ELV35089.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0816]
gi|444563079|gb|ELV40114.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0848]
gi|444571589|gb|ELV48065.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1775]
gi|444572591|gb|ELV49013.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1753]
gi|444578977|gb|ELV54998.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1793]
gi|444592927|gb|ELV68165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA11]
gi|444593198|gb|ELV68429.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ATCC 700728]
gi|444594770|gb|ELV69925.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1805]
gi|444606370|gb|ELV80989.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA13]
gi|444606775|gb|ELV81381.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA19]
gi|444615314|gb|ELV89520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA2]
gi|444622836|gb|ELV96780.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA47]
gi|444623680|gb|ELV97597.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA48]
gi|444629354|gb|ELW03058.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA8]
gi|444638195|gb|ELW11546.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
7.1982]
gi|444640520|gb|ELW13779.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1781]
gi|444644880|gb|ELW17975.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1762]
gi|444653968|gb|ELW26663.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA35]
gi|444659371|gb|ELW31789.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4880]
gi|444663956|gb|ELW36160.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0083]
gi|444669407|gb|ELW41390.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0670]
Length = 384
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP + R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPAAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|395227152|ref|ZP_10405480.1| 23S rRNA methyltransferase [Citrobacter sp. A1]
gi|420366694|ref|ZP_14867527.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|421845430|ref|ZP_16278584.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii ATCC 8090 = MTCC 1658]
gi|424731693|ref|ZP_18160275.1| 23s rrna methyltransferase [Citrobacter sp. L17]
gi|391324001|gb|EIQ80616.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|394719335|gb|EJF24940.1| 23S rRNA methyltransferase [Citrobacter sp. A1]
gi|411773333|gb|EKS56892.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii ATCC 8090 = MTCC 1658]
gi|422893831|gb|EKU33647.1| 23s rrna methyltransferase [Citrobacter sp. L17]
gi|455641364|gb|EMF20535.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii GTC 09479]
Length = 388
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKATGVRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD +ND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|333375090|ref|ZP_08466914.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330]
gi|332971507|gb|EGK10457.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330]
Length = 364
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/256 (44%), Positives = 157/256 (61%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NLS+ EI+ QL A++ I
Sbjct: 96 PETERGTLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIGQLWWANKALGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL NY ++ A+ IM + +S +R+TVST G+V +++ D+P +
Sbjct: 156 SNVVMMGMGEPLANYDNVITALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA VR +I+P + +PL++LM A Y K + I EY+MLDGVND+ +H
Sbjct: 215 LAVSLHASNDKVRDEIVPLNKKYPLKELMAACNRYLVKAPRDFITFEYVMLDGVNDKPEH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + SS+ ++ F++IL + ++ TTVRK G
Sbjct: 275 ARELVELVKDTPCKFNLIPFNPFPN-SGYERSSNKNINIFKEILMEA-DLVTTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVKDK 348
>gi|410697864|gb|AFV76932.1| 23S rRNA m2A2503 methyltransferase [Thermus oshimai JL-2]
Length = 363
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 162/285 (56%), Gaps = 26/285 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G EAV M Y++ R T+C+SS VGC GC FCATG +GF NL++
Sbjct: 92 DGKKTEAVYMPYEN--------------RKTVCLSSMVGCPAGCTFCATGALGFGRNLTA 137
Query: 65 GEIVEQLVHAS-----RLSNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKR 116
EI++QL+ + IRNVV MGMGEPL N +++AVR + GL +SP+R
Sbjct: 138 AEILDQLLAIAYHQGISPREIRNVVLMGMGEPLLNLTNVLKAVRTLLHPKGL--AMSPRR 195
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
IT+STVGI I + + G+ LA+SLHAP + R +I+P A +P+ ++M A++ Y
Sbjct: 196 ITLSTVGIPRGIYRLAEEDLGIRLALSLHAPDDETRKKIIPTAHRYPIAEIMEAVRAYYA 255
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
+++++ EY +L G+ND A L +LL+ VNLIPFNP + + + +
Sbjct: 256 KTKRRVTFEYTLLQGLNDHPWQARLLSRLLKGLSAHVNLIPFNPWPG-APVKGTPKAGIL 314
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 281
+F + L+ I T+VR GQD+ ACGQL + P ++ K P
Sbjct: 315 AFAEELK-RQGIPTSVRFSRGQDVGAACGQLALRTPQALTFKPLP 358
>gi|387930290|gb|AFK11687.1| ribosomal RNA large subunit methyltransferase [Gallibacterium
anatis]
Length = 372
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 157/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 98 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKVIGAFGETKVRP 157
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N + +V A+ IM + +S +R+T+ST G+V A++K ++ +
Sbjct: 158 ITNVVMMGMGEPLLNVSNVVPAMEIMLDDFGYGLSKRRVTLSTSGVVPALDKL-GEMIDV 216
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E LM+++ Y K S K+ IEY+MLD VNDE
Sbjct: 217 ALAISLHAPNDELRNEIVPLNKKYNIEMLMDSVNRYLKISNANHGKVTIEYVMLDHVNDE 276
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL K+L+ +NLIP+NP + + S++ ++ FQK L Y VRK
Sbjct: 277 VEHAHQLAKVLKNTPCKINLIPWNPFPE-APYNKSTNTRIDRFQKTLM-EYGFTVIVRKT 334
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 335 RGDDIDAACGQLAGDVIDR 353
>gi|303246742|ref|ZP_07333019.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ]
gi|302491759|gb|EFL51639.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ]
Length = 350
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 153/244 (62%), Gaps = 17/244 (6%)
Query: 35 TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS-------NIRNVVFMG 87
T C+S+QVGC MGC FCATG +GF+ N++ GE++ Q++ A + +RN+VFMG
Sbjct: 101 TACLSTQVGCAMGCGFCATGMLGFRRNMTPGEMLGQVLVARQYLLDKGEALALRNLVFMG 160
Query: 88 MGEPLNNYAALV---EAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL-NLAVS 143
MGEPL NY LV EA+ GL F S +RITVST G+ N GL +LAVS
Sbjct: 161 MGEPLLNYDNLVKTLEALHHPQGLDF--SGRRITVSTAGVRR--NLLELGRTGLCSLAVS 216
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 203
LHAP Q+ R +IMP A PL +LM L+EY ++++ EY++LDGVND + A +L
Sbjct: 217 LHAPTQEKRARIMPGAAKLPLSELMGILREYPLKPRERLTFEYLLLDGVNDADADARELV 276
Query: 204 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 263
+LL T + VNLI +N + FR + +V++FQ+IL+ + I T+RK G DI+ A
Sbjct: 277 RLLSTVKAKVNLIVYNATPGLP-FRQPAAGRVAAFQEILK-AKGITATIRKSKGADIAAA 334
Query: 264 CGQL 267
CGQL
Sbjct: 335 CGQL 338
>gi|237732496|ref|ZP_04562977.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
gi|226908035|gb|EEH93953.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
Length = 388
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKATGVRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD +ND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|337279529|ref|YP_004619001.1| hypothetical protein Rta_18910 [Ramlibacter tataouinensis TTB310]
gi|334730606|gb|AEG92982.1| conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length = 385
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 123/290 (42%), Positives = 162/290 (55%), Gaps = 33/290 (11%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D G VEAV + P R TLC+SSQ GC +GC FC+TG GF
Sbjct: 83 FDVGQGNAVEAVFI--------------PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFAR 128
Query: 61 NLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPF 110
NLS+GEIV QL A I NVV MGMGEPL NY+ALV A+R M +
Sbjct: 129 NLSTGEIVAQLWFAEHYLRRHLGTSERVISNVVMMGMGEPLQNYSALVPALRTMLDDHGY 188
Query: 111 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+S +R+TVST G+V I++ D P + LAVSLHAP ++R ++P R +PL +L++A
Sbjct: 189 GLSRRRVTVSTSGVVPMIDRLGQDCP-VALAVSLHAPNDELRDHLVPLNRKYPLAELLDA 247
Query: 171 LKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETF-----QVVVNLIPFNPIGSV 224
Y +++ + I EY MLDGVND+ +HA QL +L+ +NLIPFNP
Sbjct: 248 CNRYLEHAPRDFITFEYCMLDGVNDQPEHAQQLIELVRGHAGRGVSCKLNLIPFNPFPQ- 306
Query: 225 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
S S + VS+F + L + I TTVRK G DI ACGQL ++ D+
Sbjct: 307 SGLTRSPNKAVSAFAEKLINA-GIVTTVRKTRGDDIDAACGQLAGDVRDR 355
>gi|88812659|ref|ZP_01127906.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
gi|88790075|gb|EAR21195.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
Length = 378
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 159/251 (63%), Gaps = 14/251 (5%)
Query: 27 PRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-------LSN 79
P PG R TLC+SSQ+GC + C FC+TG GF NL++ EIV QL+ ++
Sbjct: 111 PEPG--RGTLCVSSQLGCPLACTFCSTGQQGFNRNLTAAEIVGQLLFVTQALAADGVAGR 168
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVVFMGMGEPL N+A++++A +M + +S +R+T+ST GIV A+ + +++ +
Sbjct: 169 VTNVVFMGMGEPLANFASVLKASNLMVDEHAYNLSRRRVTLSTSGIVPALYRL-AEVSRI 227
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQ 197
+LAVSLHAP +R +++P R +P+ +L+ A + Y + +I EY+MLD VND +
Sbjct: 228 SLAVSLHAPDDALRDELVPINRKYPIAELLAACRNYVECTPHHRITWEYVMLDAVNDTDG 287
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA L +LL+ +NLIPFN + +R+S +V+ F +IL+ + I TTVRK G
Sbjct: 288 HAQALARLLKGVPSKINLIPFNAFPG-APYRSSPPQRVARFTEILQRAGYI-TTVRKTRG 345
Query: 258 QDISGACGQLV 268
DI GACGQLV
Sbjct: 346 DDIDGACGQLV 356
>gi|313672236|ref|YP_004050347.1| 23S rRNA m(2)a-2503 methyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312938992|gb|ADR18184.1| 23S rRNA m(2)A-2503 methyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 350
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 152/243 (62%), Gaps = 12/243 (4%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVH-----ASRLSNIRNVVFMG 87
R TLC+S+QVGC+MGC FCAT +GF +L++GEIV Q++ A+ + N+VFMG
Sbjct: 100 RITLCVSTQVGCRMGCAFCATAKIGFIRDLTAGEIVRQIMEVNEHLATNSEKVTNIVFMG 159
Query: 88 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
MGEPL+NY +V+A+ I+T GL + S +++TVST G+V I++ +NLAVSL
Sbjct: 160 MGEPLDNYHNVVKAIGIITDEMGLGY--SHRKVTVSTSGVVDRIDELFKLKKQVNLAVSL 217
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
+A D+R IMP + F +EKLM LK +++I IEY+M+ GVND A +L +
Sbjct: 218 NATTDDIRSAIMPINKKFNIEKLMKKLKSLPIQKRKRITIEYVMIKGVNDTLDDAKRLVR 277
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LL + +NLI +N G +R + V SFQK L + I +RK +G++I GAC
Sbjct: 278 LLNGLPIKINLIAYND-GGNENYRAPDEQTVLSFQKYLVDKH-ITAFIRKSLGKNIEGAC 335
Query: 265 GQL 267
GQL
Sbjct: 336 GQL 338
>gi|24113846|ref|NP_708356.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
2a str. 301]
gi|30063909|ref|NP_838080.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T]
gi|110806448|ref|YP_689968.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
5 str. 8401]
gi|415853757|ref|ZP_11529687.1| UPF0063 protein yfgB [Shigella flexneri 2a str. 2457T]
gi|417723907|ref|ZP_12372711.1| hypothetical protein SFK304_3333 [Shigella flexneri K-304]
gi|417729442|ref|ZP_12378140.1| hypothetical protein SFK671_3114 [Shigella flexneri K-671]
gi|417734404|ref|ZP_12383055.1| hypothetical protein SF274771_3067 [Shigella flexneri 2747-71]
gi|417739388|ref|ZP_12387967.1| hypothetical protein SF434370_2731 [Shigella flexneri 4343-70]
gi|417744409|ref|ZP_12392935.1| 23S rRNA methyltransferase [Shigella flexneri 2930-71]
gi|418257523|ref|ZP_12881191.1| 23S rRNA methyltransferase [Shigella flexneri 6603-63]
gi|420342843|ref|ZP_14844316.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-404]
gi|420374403|ref|ZP_14874393.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|424838843|ref|ZP_18263480.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
5a str. M90T]
gi|81723142|sp|Q83K42.1|RLMN_SHIFL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123342626|sp|Q0T202.1|RLMN_SHIF8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|24052937|gb|AAN44063.1| conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042165|gb|AAP17890.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T]
gi|110615996|gb|ABF04663.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|313651003|gb|EFS15403.1| UPF0063 protein yfgB [Shigella flexneri 2a str. 2457T]
gi|332754204|gb|EGJ84572.1| hypothetical protein SF434370_2731 [Shigella flexneri 4343-70]
gi|332755567|gb|EGJ85931.1| hypothetical protein SFK671_3114 [Shigella flexneri K-671]
gi|332756478|gb|EGJ86829.1| hypothetical protein SF274771_3067 [Shigella flexneri 2747-71]
gi|332766350|gb|EGJ96560.1| 23S rRNA methyltransferase [Shigella flexneri 2930-71]
gi|333016202|gb|EGK35533.1| hypothetical protein SFK304_3333 [Shigella flexneri K-304]
gi|383467895|gb|EID62916.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
5a str. M90T]
gi|391265916|gb|EIQ24883.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-404]
gi|391316291|gb|EIQ73749.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|397897145|gb|EJL13556.1| 23S rRNA methyltransferase [Shigella flexneri 6603-63]
Length = 384
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPDAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|385870746|gb|AFI89266.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium sp.
SCC3193]
Length = 400
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 126 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 185
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 186 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 244
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 245 ALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 304
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 305 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 362
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 363 RGDDIDAACGQLAGEVVDR 381
>gi|421080362|ref|ZP_15541296.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae CFBP 3304]
gi|401705215|gb|EJS95404.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae CFBP 3304]
Length = 400
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 126 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 185
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 186 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 244
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 245 ALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 304
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 305 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 362
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 363 RGDDIDAACGQLAGEVVDR 381
>gi|283786133|ref|YP_003365998.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
gi|282949587|emb|CBG89205.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
Length = 388
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|384544133|ref|YP_005728196.1| protein yfgB [Shigella flexneri 2002017]
gi|281601919|gb|ADA74903.1| protein yfgB [Shigella flexneri 2002017]
Length = 340
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 66 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 125
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 126 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 184
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 185 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 244
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 245 TEHAHQLAELLKDTPCKINLIPWNPFPDAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 302
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 303 RGDDIDAACGQLAGDVIDR 321
>gi|261820570|ref|YP_003258676.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae WPP163]
gi|261604583|gb|ACX87069.1| radical SAM enzyme, Cfr family [Pectobacterium wasabiae WPP163]
Length = 400
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 126 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 185
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 186 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 244
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 245 ALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 304
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 305 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 362
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 363 RGDDIDAACGQLAGEVVDR 381
>gi|417703098|ref|ZP_12352209.1| hypothetical protein SFK218_3513 [Shigella flexneri K-218]
gi|333001958|gb|EGK21524.1| hypothetical protein SFK218_3513 [Shigella flexneri K-218]
Length = 336
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 62 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 121
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 122 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 180
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 181 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 240
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 241 TEHAHQLAELLKDTPCKINLIPWNPFPDAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 298
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 299 RGDDIDAACGQLAGDVIDR 317
>gi|50122145|ref|YP_051312.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
atrosepticum SCRI1043]
gi|81644326|sp|Q6D273.1|RLMN_ERWCT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|49612671|emb|CAG76121.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 398
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PEEERATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVVDR 379
>gi|383787538|ref|YP_005472107.1| 23S rRNA m(2)A-2503 methyltransferase [Fervidobacterium pennivorans
DSM 9078]
gi|383110385|gb|AFG35988.1| 23S rRNA m(2)A-2503 methyltransferase [Fervidobacterium pennivorans
DSM 9078]
Length = 353
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 151/240 (62%), Gaps = 6/240 (2%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV--HASRLSNIRNVVFMGMGE 90
R T CISSQVGC + C FCATG G+ NLS+GEIV Q++ R NI N+V+MGMGE
Sbjct: 101 RVTACISSQVGCPVKCAFCATGQSGYVRNLSAGEIVAQVIAMEKERRVNIGNIVYMGMGE 160
Query: 91 PLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 149
PL NY +V++VRI+ + +S +RI++STVGI I + +DLP + LA+SLHAP
Sbjct: 161 PLLNYNEVVKSVRILNHKKGKNISMRRISISTVGIPEKIVQLANDLPEVKLAISLHAPTN 220
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
R I+P R + +E++++A+KEYQK ++ ++ EYI++ ND A +L +LL
Sbjct: 221 YKRDLIIPMNRKYSVEEIIHAVKEYQKITKNRVTFEYILIREFNDFVDDAEKLAELLRGI 280
Query: 210 QVVVNLIPFNPIGSVSQFRTSSDDK--VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLIP NP+ + S+ + + F++IL +NI +R++ G DI ACGQL
Sbjct: 281 GAYVNLIPVNPVETDSEIKMERPHHWAIERFKEIL-DKHNIENEIRREKGTDIDAACGQL 339
>gi|424867267|ref|ZP_18291075.1| Putative radical SAM family protein [Leptospirillum sp. Group II
'C75']
gi|387222302|gb|EIJ76760.1| Putative radical SAM family protein [Leptospirillum sp. Group II
'C75']
Length = 379
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 167/300 (55%), Gaps = 36/300 (12%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
++ G +E+V++ D R+TLC+SSQVGC +GC FC T MG
Sbjct: 85 LELSGGALIESVLIPRDD--------------RATLCVSSQVGCGIGCRFCRTAEMGLVR 130
Query: 61 NLSSGEIVEQLVHASRL-------------------SNIRNVVFMGMGEPLNNYAALVEA 101
NLS EI+ Q+ A+RL S + ++VFMGMGEPL N+ LV +
Sbjct: 131 NLSVSEILGQVRVANRLLAEAPVRDMSKETDPTPFLSRVNHLVFMGMGEPLANFDHLVRS 190
Query: 102 VRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 160
+ ++T F +S +RITVST G+ I + +NLAVSL AP +++R +MP +R
Sbjct: 191 LAVLTSPEGFGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEELRENLMPISR 250
Query: 161 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 220
P+ +++A + Y ++Q+I EY++L GVND E A +L +LL F+ VNLIPFNP
Sbjct: 251 HHPIRSILSACRAYPLRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRSKVNLIPFNP 310
Query: 221 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 280
S + D+V FQ+IL+ + T+R G+DI GACGQL ++ ++ +S+
Sbjct: 311 YPG-SPYHRPDKDRVRRFQEILQAK-GVTATLRTTRGEDILGACGQLALSPSPALTMESS 368
>gi|384432095|ref|YP_005641455.1| ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus SG0.5JP17-16]
gi|333967563|gb|AEG34328.1| Ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus SG0.5JP17-16]
Length = 355
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 160/278 (57%), Gaps = 22/278 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G EAV M Y++ R T+C+S+ VGC GC FCATG +GF NL++
Sbjct: 84 DGKKTEAVYMPYEN--------------RKTVCLSTMVGCPAGCTFCATGALGFGRNLTA 129
Query: 65 GEIVEQLV---HASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRIT 118
EI++QL+ + LS IRNVV MGMGEPL N +++AVRIM +SP+R+T
Sbjct: 130 AEILDQLLTIAYHQGLSPREIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALSPRRVT 189
Query: 119 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178
+STVGI I + + G+ LA+SLHAP + R +I+P A +P+ ++M A++ Y +
Sbjct: 190 LSTVGIPKGIYRLAEEDLGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMEAVRHYYAKT 249
Query: 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 238
++++ EY +L GVND A L KLL+ VNLIPFNP T ++
Sbjct: 250 KRRVTFEYTLLKGVNDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVAGTPKAGVLAFA 309
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 276
+++ R + T++R GQD+ ACGQL + +P ++
Sbjct: 310 EELKR--LGVPTSIRWSRGQDVGAACGQLALKVPRPLT 345
>gi|403051770|ref|ZP_10906254.1| putative Fe-S-cluster redox enzyme [Acinetobacter bereziniae LMG
1003]
gi|445414088|ref|ZP_21433813.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter sp. WC-743]
gi|444764907|gb|ELW89212.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter sp. WC-743]
Length = 416
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 162/261 (62%), Gaps = 20/261 (7%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSN 79
G R TLCISSQVGC + C+FC+TG GF+ +L EI+ QL A+ R +
Sbjct: 137 GSRKTLCISSQVGCALDCSFCSTGKQGFQRDLLPDEIIGQLWMANYSYMEDVPVAERERS 196
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL NY A++ ++ IM + +S +R+T+ST G+V I++ D+ +
Sbjct: 197 VTNVVMMGMGEPLLNYDAVLSSMNIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDI-DV 255
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVN 193
LA+SLHAP ++R +++P + +PL +L+ A + Y ++S++ + IEY+MLDGVN
Sbjct: 256 ALAISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESSRKHVTIEYVMLDGVN 315
Query: 194 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253
D+ +HA Q+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R
Sbjct: 316 DQPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIR 373
Query: 254 KQMGQDISGACGQLVVNLPDK 274
+ G DI ACGQLV + D+
Sbjct: 374 QTRGDDIDAACGQLVGQVADR 394
>gi|334364779|ref|ZP_08513759.1| 23S rRNA m2A2503 methyltransferase [Alistipes sp. HGB5]
gi|313159155|gb|EFR58530.1| 23S rRNA m2A2503 methyltransferase [Alistipes sp. HGB5]
Length = 379
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 147/240 (61%), Gaps = 4/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P G R+TLC+SSQ GC+MGC FCATG G + +L++ EI+ Q+V ++ NVVFMGM
Sbjct: 134 PDGERATLCVSSQAGCRMGCKFCATGRQGLQHSLTTAEILNQIVSLPERDSLTNVVFMGM 193
Query: 89 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEPL+N ++ A+ IMT F SP RIT+ST G+ + +F D ++LAVSLH P
Sbjct: 194 GEPLDNTDNVLRALEIMTSEWGFGWSPTRITLSTAGVAPELQRF-LDATKVHLAVSLHNP 252
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
+ R IMP RA+P+ ++ L+ Y Q+++ EYI++ G+ND +H +L +LL+
Sbjct: 253 FHEERAAIMPVERAWPIAEVAAILRRYDFTHQRRVSFEYIVMSGLNDSPRHIRELCRLLD 312
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +NLI F+ I S F + D+ + F+ L I+TT+R G+DI ACG L
Sbjct: 313 GIKCRINLIRFHKIPG-SPFFSPDDEAMIRFRDTLTAK-GIQTTIRASRGEDIQAACGLL 370
>gi|406038656|ref|ZP_11046011.1| hypothetical protein AursD1_02268 [Acinetobacter ursingii DSM 16037
= CIP 107286]
Length = 408
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 165/261 (63%), Gaps = 20/261 (7%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSN 79
G R TLCISSQVGC + C+FC+TG GF+ +L+ EI+ QL A+ R +
Sbjct: 129 GSRKTLCISSQVGCALDCSFCSTGKQGFQRDLNPDEIIGQLWVANQSYMEDVPVAERERS 188
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL NY A++ ++++M + +S +R+T+ST G+V I++ D+ +
Sbjct: 189 VTNVVMMGMGEPLLNYDAVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDI-DV 247
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVN 193
LA+SLHAP ++R +++P + +PLE+L+ A + Y +++++ + IEY+MLDGVN
Sbjct: 248 ALAISLHAPNDELRNELVPINKKYPLEQLIAACQRYLAKGGNESTRKHVTIEYVMLDGVN 307
Query: 194 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253
D +HA Q+ KLL+ +NLIPFNP R SS +++ +FQK L + + T+R
Sbjct: 308 DHPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIIAFQKTLSDAGFV-CTIR 365
Query: 254 KQMGQDISGACGQLVVNLPDK 274
+ G DI ACGQLV ++ D+
Sbjct: 366 QTRGDDIDAACGQLVGHVADR 386
>gi|333371224|ref|ZP_08463184.1| cfr family radical SAM enzyme [Desmospora sp. 8437]
gi|332976466|gb|EGK13312.1| cfr family radical SAM enzyme [Desmospora sp. 8437]
Length = 350
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 166/269 (61%), Gaps = 22/269 (8%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E VIMR++ +++C+++QVGC++GC FCA+ G K +L +
Sbjct: 86 DGHAIETVIMRHNYG--------------NSVCVTTQVGCRVGCTFCASTLGGLKRDLKA 131
Query: 65 GEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRIT 118
GE+V Q++ A R + +VV MG+GEP NY A V+ +R++ ++ +RIT
Sbjct: 132 GEVVAQVLEAQRYLDRWGERVHSVVIMGIGEPFENYDASVQFMRVIQDEKGLNLAQRRIT 191
Query: 119 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178
VST GIV +I +F + + LA+SLHAP Q +R ++MP + +PLE+L+ A + Y + +
Sbjct: 192 VSTSGIVPSIYRFAEEGLQVGLAISLHAPNQALRKRLMPVSYRYPLEELLAACRYYVQKT 251
Query: 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 238
++I EY ++ G ND +HAH+LG+LLE ++NLIP N + + RT +++ F
Sbjct: 252 GRRITYEYALIGGKNDAPEHAHELGRLLEGSGSLINLIPVNHVPERNYTRTPR-NRIFKF 310
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ IL+ SYN+ TT+R++ G DI ACGQL
Sbjct: 311 RDILQ-SYNLNTTIRREHGSDIEAACGQL 338
>gi|329770490|ref|ZP_08261868.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis
M325]
gi|328836239|gb|EGF85908.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis
M325]
Length = 377
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 166/273 (60%), Gaps = 22/273 (8%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ Q+ +E+V+MR KY ++LC+++QVGC++GC FCA+ G K
Sbjct: 100 FELQDKFTIESVLMR-----NKYG---------NSLCVTTQVGCRIGCTFCASTLGGLKR 145
Query: 61 NLSSGEIVEQLVHA-----SRLSNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSP 114
NL +GEIV Q++ + I ++V MG+GEP NY +++ ++I+ + F +
Sbjct: 146 NLEAGEIVSQVLKVQQELDKKGERISSIVIMGIGEPFENYDEMMDFIKIVNSDESFNIGA 205
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST GIV I F ++ +N AVSLHAP ++R +IMP RA+ ++KLM AL+ Y
Sbjct: 206 RHITVSTSGIVPRIYDFANENIQINFAVSLHAPTNELRSKIMPVNRAYNIDKLMEALRYY 265
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK + ++I EY ++ VND+++HA +L ++++ VNLIP N + + RTS +D
Sbjct: 266 QKTTNRRITFEYGLMGKVNDQKEHAEKLSEIIKGINCHVNLIPINYVPERNYVRTSKND- 324
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +F+KIL+ + + T+R+ G DI ACGQL
Sbjct: 325 IFAFEKILKKN-KVNVTIRRTQGDDIDAACGQL 356
>gi|150390541|ref|YP_001320590.1| ribosomal RNA large subunit methyltransferase N [Alkaliphilus
metalliredigens QYMF]
gi|205829711|sp|A6TRW3.1|RLMN_ALKMQ RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|149950403|gb|ABR48931.1| radical SAM enzyme, Cfr family [Alkaliphilus metalliredigens QYMF]
Length = 352
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 161/282 (57%), Gaps = 19/282 (6%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+M+Y T CIS+QVGC MGC FCA+ T G NL +
Sbjct: 87 DGHIIEGVLMKYKHGF--------------TACISTQVGCAMGCQFCASTTGGLIRNLRA 132
Query: 65 GEIVEQ--LVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 121
GE+++Q L+ + I N+V MG GEPL+NY + ++I+ + + IT+ST
Sbjct: 133 GEMIDQILLMQQDQGERISNIVLMGSGEPLHNYDETIRFLKIVNDPEGLNIGNRHITLST 192
Query: 122 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181
G+V I K + +NLA+SLHAP +R Q MP A+ + +++L+ + +Y +N+ ++
Sbjct: 193 CGLVPEIKKLGALQIPINLAISLHAPNDQLRKQTMPIAQKYTIDQLIQSCYDYLENNNRR 252
Query: 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241
I EY +++ VND E+ AH+L KLL+ VNLIP NPI + ++ S D +V FQ+I
Sbjct: 253 ITFEYALIEDVNDGEKEAHELSKLLKGLLCHVNLIPINPIEERT-YQKSKDSQVKKFQQI 311
Query: 242 LRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 283
L+ S I T+R++MG DI GACGQL D K V
Sbjct: 312 LK-SNGIEATIRREMGTDIQGACGQLRRKYVDDQEKKEISEV 352
>gi|253689386|ref|YP_003018576.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251755964|gb|ACT14040.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 419
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 145 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 204
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 205 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 263
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 264 ALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 323
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 324 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 381
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 382 RGDDIDAACGQLAGEVVDR 400
>gi|374620265|ref|ZP_09692799.1| 23S rRNA m(2)A-2503 methyltransferase [gamma proteobacterium
HIMB55]
gi|374303492|gb|EHQ57676.1| 23S rRNA m(2)A-2503 methyltransferase [gamma proteobacterium
HIMB55]
Length = 378
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 176/297 (59%), Gaps = 32/297 (10%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G VEAV++ P G R+TLC+SSQVGC + C FC+TG GF+ +L++
Sbjct: 99 GALVEAVLI--------------PEGDRATLCVSSQVGCSLDCKFCSTGKQGFQRDLTAA 144
Query: 66 EIVEQL---------VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPK 115
EI+ Q+ A + + NVV MGMGEPL N+ +V ++ +M L + +S +
Sbjct: 145 EIIGQVWLAINSYDGWQAGKGRVVTNVVMMGMGEPLLNFDNVVSSMDLMCDDLAYGLSKR 204
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY- 174
++T+ST G+V A+++ ++L ++LAVSLHAP +R +I+P R +P+ KL+++ + Y
Sbjct: 205 KVTLSTSGVVPALDRL-AELSDVSLAVSLHAPNDAIRNKIVPINRRYPIAKLLDSARAYI 263
Query: 175 --QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 232
Q + ++ + IEY +L GVND+ +HAH+L LL+ + +NLIPFN + S F S
Sbjct: 264 DAQTDRKRVVTIEYTLLAGVNDQVEHAHELAALLKDYPCKINLIPFNDFPN-SGFERPSG 322
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD--KISAKSTPPVTDIE 287
+ VS F K+L + I TVR G DI ACGQLV ++ D K SA+ +IE
Sbjct: 323 NAVSRFWKVLMEAGFI-VTVRTTRGDDIDAACGQLVGDVNDRTKRSARYRAQYEEIE 378
>gi|312973242|ref|ZP_07787414.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
gi|310331837|gb|EFP99072.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
Length = 339
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 65 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 124
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 125 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 183
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 184 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 243
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 244 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 301
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 302 RGDDIDAACGQLAGDVIDR 320
>gi|398805477|ref|ZP_10564450.1| 23S rRNA, methyltransferase [Polaromonas sp. CF318]
gi|398091513|gb|EJL81954.1| 23S rRNA, methyltransferase [Polaromonas sp. CF318]
Length = 382
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 152/262 (58%), Gaps = 19/262 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLCISSQ GC +GC FC+TG GF NL++GEI+ QL A
Sbjct: 96 PETDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIISQLWFAEHFLRQHLGREERV 155
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY LV A+++M + +S +R+TVST G+V I++ D P +
Sbjct: 156 ISNVVMMGMGEPLQNYGQLVPALKVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAGDCP-V 214
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P + +P+ +L+ A YQ ++ + I EY MLDGVND+
Sbjct: 215 ALAVSLHAPEDALRDNLVPLNKKYPIAELLEACTRYQASAPRDFITFEYCMLDGVNDQPA 274
Query: 198 HAHQLGKLLET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL L++ NLIPFNP S + S +V++F KIL + I TTV
Sbjct: 275 HARQLVALVQAHAARGLSCKFNLIPFNPF-PASGLKRSDMPQVAAFAKILMDA-GIVTTV 332
Query: 253 RKQMGQDISGACGQLVVNLPDK 274
RK G DI ACGQL ++ D+
Sbjct: 333 RKTRGDDIDAACGQLAGDVQDR 354
>gi|384917380|ref|ZP_10017506.1| Radical SAM family enzyme (modular protein) [Methylacidiphilum
fumariolicum SolV]
gi|384525238|emb|CCG93379.1| Radical SAM family enzyme (modular protein) [Methylacidiphilum
fumariolicum SolV]
Length = 362
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 157/239 (65%), Gaps = 7/239 (2%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--IRNVVFMGMGE 90
R TLC+S+QVGC + C FCA+G GFK NLS GEIVEQ++ + ++ I ++VFMGMGE
Sbjct: 102 RLTLCVSTQVGCPLKCGFCASGLFGFKRNLSCGEIVEQVLLSEAIAKERISHIVFMGMGE 161
Query: 91 PLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 149
PL NY L++A+R++T +SP+RIT+ST GIV I + ++ LA+SLHA
Sbjct: 162 PLLNYEQLIQAIRLITSSWGLSISPRRITISTSGIVPNILRLANESLPFRLAISLHATTD 221
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
++R ++MP R +PL+ L+ + + + +QKI +EYI++ GVND + +L K+ ++
Sbjct: 222 ELRNKLMPINRKYPLQDLLKSCEVFCSKRKQKITLEYILIAGVNDRMEDVERLAKIAKSL 281
Query: 210 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI-LRGSYNIRTTVRKQMGQDISGACGQL 267
+ VNLI +NP+ + + + ++ F K+ ++G ++ ++R++ G+DI GACGQL
Sbjct: 282 KAKVNLIAYNPVLQMPWKTPNKKEIMTFFHKLQIKG---VQVSLRQERGRDIDGACGQL 337
>gi|386388745|ref|ZP_10073598.1| 23S rRNA m2A2503 methyltransferase [Haemophilus
paraphrohaemolyticus HK411]
gi|385697259|gb|EIG27694.1| 23S rRNA m2A2503 methyltransferase [Haemophilus
paraphrohaemolyticus HK411]
Length = 386
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 112 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNFGVTGVRP 171
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM + +S +R+T+ST G+V A++ D +
Sbjct: 172 ITNVVMMGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDALR-DKIDV 230
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E L+N++ +Y + S K+ IEY+MLD VNDE
Sbjct: 231 ALAISLHAPNDEIRDEIVPINKKYNIEMLINSVNKYLEVSNANHGKVTIEYVMLDHVNDE 290
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HAHQL K+L+ +NLIP+NP + + SS+ +V FQK L Y T+RK
Sbjct: 291 VDHAHQLAKVLKNTPCKINLIPWNPFPE-APYAKSSNSRVDRFQKALM-EYGFTVTIRKT 348
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 349 RGDDIDAACGQLAGDVIDR 367
>gi|345892533|ref|ZP_08843352.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio sp.
6_1_46AFAA]
gi|345047025|gb|EGW50894.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio sp.
6_1_46AFAA]
Length = 353
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/276 (42%), Positives = 165/276 (59%), Gaps = 27/276 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G VE V++ DS R G R T C+SSQVGC MGC FCATG MGF+ N++
Sbjct: 85 EDGALVETVLIPSDS---------REGVRRWTQCLSSQVGCAMGCTFCATGDMGFERNMT 135
Query: 64 SGEIVEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQV 112
GEI+ Q LV L + +RN+VFMGMGEPL N ++ A++ + GL F
Sbjct: 136 MGEILGQILVAREHLGDNRPDWPVLRNLVFMGMGEPLLNLREVMRALQSLNNDKGLNF-- 193
Query: 113 SPKRITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
SP+RITVST GI + + + GL LAVSLHAP Q++R +IMP A +PL++L+ AL
Sbjct: 194 SPRRITVSTCGIEKGLAELGAS--GLAYLAVSLHAPTQELRARIMPKAARWPLDQLLAAL 251
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
K Y ++++I EY++L G+ND A +L +L+ + +NLI +NP + +
Sbjct: 252 KSYPLKTRERITFEYLLLGGINDGPGQAEELARLVADIKGKLNLIVYNP-AEGAPYAAPD 310
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +V +F++ L +I VRK GQDI ACGQL
Sbjct: 311 EARVLAFEQCL-WKRHITAIVRKSKGQDIKAACGQL 345
>gi|260869206|ref|YP_003235608.1| putative enzyme [Escherichia coli O111:H- str. 11128]
gi|415822426|ref|ZP_11511054.1| hypothetical protein ECOK1180_3845 [Escherichia coli OK1180]
gi|417188986|ref|ZP_12012544.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0522]
gi|417207662|ref|ZP_12019883.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli JB1-95]
gi|417592852|ref|ZP_12243547.1| hypothetical protein EC253486_3465 [Escherichia coli 2534-86]
gi|419198017|ref|ZP_13741403.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC8A]
gi|419204532|ref|ZP_13747712.1| 23S rRNA methyltransferase [Escherichia coli DEC8B]
gi|419222526|ref|ZP_13765447.1| 23S rRNA methyltransferase [Escherichia coli DEC8E]
gi|419887608|ref|ZP_14408182.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9570]
gi|419894069|ref|ZP_14414009.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9574]
gi|420087423|ref|ZP_14599393.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9602]
gi|420097590|ref|ZP_14608885.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9634]
gi|257765562|dbj|BAI37057.1| predicted enzyme [Escherichia coli O111:H- str. 11128]
gi|323177359|gb|EFZ62947.1| hypothetical protein ECOK1180_3845 [Escherichia coli OK1180]
gi|345337027|gb|EGW69460.1| hypothetical protein EC253486_3465 [Escherichia coli 2534-86]
gi|378046574|gb|EHW08953.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC8A]
gi|378047653|gb|EHW10015.1| 23S rRNA methyltransferase [Escherichia coli DEC8B]
gi|378065101|gb|EHW27251.1| 23S rRNA methyltransferase [Escherichia coli DEC8E]
gi|386192531|gb|EIH81255.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0522]
gi|386196976|gb|EIH91184.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli JB1-95]
gi|388362476|gb|EIL26483.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9570]
gi|388365275|gb|EIL29078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9574]
gi|394383752|gb|EJE61339.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9634]
gi|394393294|gb|EJE69983.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9602]
Length = 384
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|170767629|ref|ZP_02902082.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
gi|170123963|gb|EDS92894.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
Length = 384
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|417367061|ref|ZP_12139100.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Hvittingfoss str.
A4-620]
gi|353590196|gb|EHC48787.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Hvittingfoss str.
A4-620]
Length = 336
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 62 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 121
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 122 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 180
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 181 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 240
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 241 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 298
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 299 RGDDIDAACGQLAGDVIDR 317
>gi|329120380|ref|ZP_08249047.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
BAA-1200]
gi|327462335|gb|EGF08661.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
BAA-1200]
Length = 362
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/256 (44%), Positives = 153/256 (59%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EIV QL A++ I
Sbjct: 96 PESERGTLCISSQVGCALECTFCSTGRQGFNRNLTTAEIVGQLWWANKALGATPKDERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL NY +V ++ +M + +S +R+TVST G+V +++ D+P +
Sbjct: 156 SNVVMMGMGEPLANYDNVVRSLSVMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA VR QI+P + +PL+ LM A + Y K + + EY+MLDGVND+ +H
Sbjct: 215 LAVSLHASNDHVRDQIVPLNKKYPLKDLMAACRRYLVKAPRDFVTFEYVMLDGVNDKAEH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L KL+E NLIPFNP S + SS + + F+ IL+ + + TVRK G
Sbjct: 275 ARELLKLVEDVPCKFNLIPFNPFPH-SGYERSSAENIRIFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVKDK 348
>gi|417609142|ref|ZP_12259645.1| hypothetical protein ECSTECDG1313_3549 [Escherichia coli
STEC_DG131-3]
gi|345358351|gb|EGW90539.1| hypothetical protein ECSTECDG1313_3549 [Escherichia coli
STEC_DG131-3]
Length = 336
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 62 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 121
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 122 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 180
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 181 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 240
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 241 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 298
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 299 RGDDIDAACGQLAGDVIDR 317
>gi|260598903|ref|YP_003211474.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis z3032]
gi|429101334|ref|ZP_19163308.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis 564]
gi|260218080|emb|CBA32831.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis z3032]
gi|426287983|emb|CCJ89421.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis 564]
Length = 388
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLDKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|149197716|ref|ZP_01874766.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155]
gi|149139286|gb|EDM27689.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155]
Length = 343
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 150/246 (60%), Gaps = 7/246 (2%)
Query: 28 RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRN 82
R G R++LCISSQ GC C FC+T T+GFK NL+ EI+ Q++ A + +RN
Sbjct: 92 RIGTGRTSLCISSQAGCTEKCTFCSTATLGFKRNLTLAEIIGQVILAGEILRKEDRKVRN 151
Query: 83 VVFMGMGEPLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
+VFMGMGEPL N +++++ IM + +S KR+TVST+GI I K P +NLA
Sbjct: 152 IVFMGMGEPLRNTDNVLKSLEIMLSSAYMGLSSKRVTVSTIGITDNITKLRHSFPEVNLA 211
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
+SLHA VR +MP + FP+E + L Q+ + + I+Y+++ +ND + A +
Sbjct: 212 LSLHASNDQVRDILMPINKTFPMETIKETLLSAQELASGDLMIQYLLIKDLNDSPEQAQE 271
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L L+ ++NLIP+N + ++ SS++K+S+FQ +L+ S + + T R +G+DI
Sbjct: 272 LAAFLKGINCIINLIPYNDSMGMGNWKCSSEEKMSAFQDVLQES-DFQVTRRHSLGRDID 330
Query: 262 GACGQL 267
ACGQL
Sbjct: 331 AACGQL 336
>gi|417708574|ref|ZP_12357605.1| hypothetical protein SFVA6_3397 [Shigella flexneri VA-6]
gi|417713570|ref|ZP_12362535.1| hypothetical protein SFK272_3309 [Shigella flexneri K-272]
gi|417718409|ref|ZP_12367306.1| hypothetical protein SFK227_3146 [Shigella flexneri K-227]
gi|417828928|ref|ZP_12475479.1| 23S rRNA methyltransferase [Shigella flexneri J1713]
gi|420321407|ref|ZP_14823235.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
2850-71]
gi|420331866|ref|ZP_14833523.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-1770]
gi|333000705|gb|EGK20281.1| hypothetical protein SFVA6_3397 [Shigella flexneri VA-6]
gi|333002312|gb|EGK21876.1| hypothetical protein SFK272_3309 [Shigella flexneri K-272]
gi|333016135|gb|EGK35467.1| hypothetical protein SFK227_3146 [Shigella flexneri K-227]
gi|335574783|gb|EGM61101.1| 23S rRNA methyltransferase [Shigella flexneri J1713]
gi|391247478|gb|EIQ06727.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
2850-71]
gi|391251426|gb|EIQ10641.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-1770]
Length = 384
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|417690641|ref|ZP_12339861.1| hypothetical protein SB521682_2897 [Shigella boydii 5216-82]
gi|332087964|gb|EGI93089.1| hypothetical protein SB521682_2897 [Shigella boydii 5216-82]
Length = 384
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|424772058|ref|ZP_18199173.1| putative enzyme [Escherichia coli O111:H8 str. CFSAN001632]
gi|421939046|gb|EKT96577.1| putative enzyme [Escherichia coli O111:H8 str. CFSAN001632]
Length = 384
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|256390734|ref|YP_003112298.1| ribosomal RNA large subunit methyltransferase N [Catenulispora
acidiphila DSM 44928]
gi|256356960|gb|ACU70457.1| radical SAM enzyme, Cfr family [Catenulispora acidiphila DSM 44928]
Length = 395
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 160/276 (57%), Gaps = 29/276 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE+V+MRY R+T+C+SSQ GC M C FCATG G N+S+
Sbjct: 131 DGATVESVLMRYRD--------------RTTMCVSSQAGCGMNCPFCATGQAGLTRNMST 176
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LP--FQ 111
GEIVEQ+V +R + NVVFMGMGEPL NY A++ AVR +T +P
Sbjct: 177 GEIVEQVVAGARTMARGEVPGGPGRVSNVVFMGMGEPLANYKAVIGAVRRLTEPVPDGLG 236
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V AI K ++ + LAVSLHAP ++R ++P + + ++++A
Sbjct: 237 LSARHITVSTVGLVPAIEKLTAEAIPVTLAVSLHAPDDELRDTLVPVNTRWNVSEVLDAA 296
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
Y +++++ IEY ++ +ND+ A +LG++L V VNLIP NP S++ S
Sbjct: 297 WRYASVTKRRVSIEYALIKDINDQAWRADRLGRMLRNKLVHVNLIPLNPTPG-SKWTASR 355
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F + L+ + + TVR G+DI GACGQL
Sbjct: 356 PQDEAEFVRRLQ-EWGVPVTVRDTRGRDIDGACGQL 390
>gi|410479374|ref|YP_006767011.1| radical SAM family protein [Leptospirillum ferriphilum ML-04]
gi|406774626|gb|AFS54051.1| putative radical SAM family protein [Leptospirillum ferriphilum
ML-04]
Length = 379
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 167/300 (55%), Gaps = 36/300 (12%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
++ +G +E+V++ D R+TLC+SSQVGC +GC FC T MG
Sbjct: 85 LELSDGALIESVLIPRDD--------------RATLCVSSQVGCGIGCRFCRTAEMGLIR 130
Query: 61 NLSSGEIVEQLVHASRL-------------------SNIRNVVFMGMGEPLNNYAALVEA 101
NLS EI+ Q+ A+RL S + ++VFMGMGEPL N+ LV +
Sbjct: 131 NLSVSEILGQVRVANRLLAESPVRDMSKETEPAPLLSRVNHLVFMGMGEPLANFDHLVRS 190
Query: 102 VRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 160
+ ++T F +S +RITVST G+ I + +NLAVSL AP +++R +MP +R
Sbjct: 191 LAVLTSPEGFGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEELRENLMPISR 250
Query: 161 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 220
P+ +++A + Y ++Q+I EY++L GVND E A +L +LL F+ VNLIPFNP
Sbjct: 251 HHPIRSILSACRAYPLRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRSKVNLIPFNP 310
Query: 221 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 280
S + D+V FQ+IL + T+R G+DI GACGQL ++ ++ +S+
Sbjct: 311 YPG-SPYHRPDKDRVRRFQEILLAK-GVTATLRTTRGEDILGACGQLALSPSPALTMESS 368
>gi|332639897|pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli
gi|332639898|pdb|3RF9|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli
Length = 404
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|16130442|ref|NP_417012.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia
coli str. K-12 substr. MG1655]
gi|74313043|ref|YP_311462.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
Ss046]
gi|82544966|ref|YP_408913.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
Sb227]
gi|82777902|ref|YP_404251.1| hypothetical protein SDY_2713 [Shigella dysenteriae Sd197]
gi|91211843|ref|YP_541829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UTI89]
gi|110642682|ref|YP_670412.1| hypothetical protein ECP_2522 [Escherichia coli 536]
gi|117624746|ref|YP_853659.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
APEC O1]
gi|157157838|ref|YP_001463839.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
E24377A]
gi|170019200|ref|YP_001724154.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ATCC 8739]
gi|170082127|ref|YP_001731447.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
str. K-12 substr. DH10B]
gi|170683806|ref|YP_001744705.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SMS-3-5]
gi|187731368|ref|YP_001881308.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
CDC 3083-94]
gi|188491812|ref|ZP_02999082.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
gi|191167679|ref|ZP_03029488.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
gi|191172618|ref|ZP_03034157.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
gi|193064109|ref|ZP_03045194.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
gi|194427328|ref|ZP_03059878.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
gi|194437563|ref|ZP_03069659.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
gi|209919994|ref|YP_002294078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SE11]
gi|215487867|ref|YP_002330298.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O127:H6 str. E2348/69]
gi|218555042|ref|YP_002387955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
IAI1]
gi|218559443|ref|YP_002392356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
S88]
gi|218690637|ref|YP_002398849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ED1a]
gi|218696144|ref|YP_002403811.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
55989]
gi|218701027|ref|YP_002408656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
IAI39]
gi|222157223|ref|YP_002557362.1| hypothetical protein LF82_3091 [Escherichia coli LF82]
gi|237705027|ref|ZP_04535508.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
3_2_53FAA]
gi|238901682|ref|YP_002927478.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
BW2952]
gi|251785842|ref|YP_003000146.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)]
gi|253772589|ref|YP_003035420.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162491|ref|YP_003045599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli B
str. REL606]
gi|254289252|ref|YP_003055000.1| hypothetical protein ECD_02409 [Escherichia coli BL21(DE3)]
gi|260845147|ref|YP_003222925.1| enzyme [Escherichia coli O103:H2 str. 12009]
gi|260856611|ref|YP_003230502.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. 11368]
gi|293410931|ref|ZP_06654507.1| cfr family radical SAM enzyme [Escherichia coli B354]
gi|293446870|ref|ZP_06663292.1| cfr family radical SAM enzyme [Escherichia coli B088]
gi|300817713|ref|ZP_07097928.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
gi|300820813|ref|ZP_07100963.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
gi|300904309|ref|ZP_07122166.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
gi|300927120|ref|ZP_07142868.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
gi|300930157|ref|ZP_07145578.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
gi|300940232|ref|ZP_07154830.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
gi|300951778|ref|ZP_07165593.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
gi|300958853|ref|ZP_07170961.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
gi|300998073|ref|ZP_07181933.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
gi|301022377|ref|ZP_07186264.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
gi|301024749|ref|ZP_07188389.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
gi|301302874|ref|ZP_07209002.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
gi|301330392|ref|ZP_07223034.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
gi|301648272|ref|ZP_07248015.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
gi|306814413|ref|ZP_07448575.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NC101]
gi|307312488|ref|ZP_07592121.1| radical SAM enzyme, Cfr family [Escherichia coli W]
gi|309784732|ref|ZP_07679365.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
gi|309794436|ref|ZP_07688859.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
gi|312965433|ref|ZP_07779665.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
gi|331643137|ref|ZP_08344272.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
gi|331648214|ref|ZP_08349304.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
gi|331653945|ref|ZP_08354946.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
gi|331658662|ref|ZP_08359606.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
gi|331664080|ref|ZP_08364990.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
gi|331669263|ref|ZP_08370111.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
gi|331673972|ref|ZP_08374735.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
gi|331678508|ref|ZP_08379183.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
gi|331684165|ref|ZP_08384761.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
gi|332278330|ref|ZP_08390743.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
gi|378712022|ref|YP_005276915.1| radical SAM enzyme, Cfr family [Escherichia coli KO11FL]
gi|383179527|ref|YP_005457532.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
53G]
gi|386281584|ref|ZP_10059246.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
4_1_40B]
gi|386594714|ref|YP_006091114.1| radical SAM enzyme, Cfr family [Escherichia coli DH1]
gi|386600495|ref|YP_006102001.1| 2-vinyl bacteriochlorophyllide hydratase [Escherichia coli IHE3034]
gi|386603443|ref|YP_006109743.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UM146]
gi|386609919|ref|YP_006125405.1| radical SAM protein [Escherichia coli W]
gi|386615220|ref|YP_006134886.1| hypothetical protein UMNK88_3167 [Escherichia coli UMNK88]
gi|386620124|ref|YP_006139704.1| Ribosomal RNA large subunit methyltransferase [Escherichia coli
NA114]
gi|386625254|ref|YP_006144982.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O7:K1 str. CE10]
gi|386700537|ref|YP_006164374.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KO11FL]
gi|386705782|ref|YP_006169629.1| hypothetical protein P12B_c2617 [Escherichia coli P12b]
gi|386710407|ref|YP_006174128.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W]
gi|387608167|ref|YP_006097023.1| radical SAM superfamily protein [Escherichia coli 042]
gi|387613113|ref|YP_006116229.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
gi|387617833|ref|YP_006120855.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O83:H1 str. NRG 857C]
gi|387622217|ref|YP_006129845.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DH1]
gi|387830414|ref|YP_003350351.1| hypothetical protein ECSF_2361 [Escherichia coli SE15]
gi|388478553|ref|YP_490745.1| hypothetical protein Y75_p2470 [Escherichia coli str. K-12 substr.
W3110]
gi|407470413|ref|YP_006783144.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|407480925|ref|YP_006778074.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2011C-3493]
gi|410481491|ref|YP_006769037.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|414577238|ref|ZP_11434417.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3233-85]
gi|415778573|ref|ZP_11489619.1| UPF0063 protein yfgB [Escherichia coli 3431]
gi|415784568|ref|ZP_11492389.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14]
gi|415803712|ref|ZP_11500691.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010]
gi|415815169|ref|ZP_11506689.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68]
gi|415828718|ref|ZP_11515190.1| hypothetical protein ECOK1357_2143 [Escherichia coli OK1357]
gi|415840204|ref|ZP_11521693.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1]
gi|415844083|ref|ZP_11523887.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G]
gi|415862465|ref|ZP_11535931.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1]
gi|415874042|ref|ZP_11541184.1| radical SAM enzyme, Cfr family [Escherichia coli MS 79-10]
gi|416268576|ref|ZP_11642205.1| Ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae CDC 74-1112]
gi|416283497|ref|ZP_11646839.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii
ATCC 9905]
gi|416299209|ref|ZP_11652290.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CDC 796-83]
gi|416335671|ref|ZP_11672364.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
WV_060327]
gi|416344049|ref|ZP_11677949.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4100B]
gi|416898710|ref|ZP_11928256.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v]
gi|417085917|ref|ZP_11953227.1| methyltransferase [Escherichia coli cloneA_i1]
gi|417115193|ref|ZP_11966329.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2741]
gi|417135332|ref|ZP_11980117.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0588]
gi|417140771|ref|ZP_11983882.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0259]
gi|417146392|ref|ZP_11987350.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2264]
gi|417155465|ref|ZP_11993594.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.0497]
gi|417163553|ref|ZP_11998741.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 99.0741]
gi|417175320|ref|ZP_12005116.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2608]
gi|417185071|ref|ZP_12010567.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 93.0624]
gi|417221985|ref|ZP_12025425.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.154]
gi|417231146|ref|ZP_12032544.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0959]
gi|417237952|ref|ZP_12035683.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 9.0111]
gi|417251892|ref|ZP_12043657.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0967]
gi|417261683|ref|ZP_12049171.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.3916]
gi|417269007|ref|ZP_12056367.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.3884]
gi|417272691|ref|ZP_12060040.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.4168]
gi|417278205|ref|ZP_12065521.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2303]
gi|417280820|ref|ZP_12068120.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3003]
gi|417286506|ref|ZP_12073795.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli TW07793]
gi|417290622|ref|ZP_12077903.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli B41]
gi|417299867|ref|ZP_12087094.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 900105 (10e)]
gi|417309002|ref|ZP_12095843.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
PCN033]
gi|417582020|ref|ZP_12232822.1| hypothetical protein ECSTECB2F1_2692 [Escherichia coli STEC_B2F1]
gi|417597826|ref|ZP_12248461.1| hypothetical protein EC30301_2964 [Escherichia coli 3030-1]
gi|417603171|ref|ZP_12253741.1| hypothetical protein ECSTEC94C_2978 [Escherichia coli STEC_94C]
gi|417613983|ref|ZP_12264441.1| hypothetical protein ECSTECEH250_3049 [Escherichia coli STEC_EH250]
gi|417619101|ref|ZP_12269515.1| hypothetical protein ECG581_2915 [Escherichia coli G58-1]
gi|417624472|ref|ZP_12274771.1| hypothetical protein ECSTECH18_3233 [Escherichia coli STEC_H.1.8]
gi|417629816|ref|ZP_12280053.1| hypothetical protein ECSTECMHI813_2745 [Escherichia coli
STEC_MHI813]
gi|417635489|ref|ZP_12285701.1| hypothetical protein ECSTECS1191_3417 [Escherichia coli STEC_S1191]
gi|417640270|ref|ZP_12290411.1| hypothetical protein ECTX1999_2984 [Escherichia coli TX1999]
gi|417663074|ref|ZP_12312655.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AA86]
gi|417667919|ref|ZP_12317464.1| hypothetical protein ECSTECO31_2736 [Escherichia coli STEC_O31]
gi|417683190|ref|ZP_12332540.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74]
gi|417756774|ref|ZP_12404848.1| 23S rRNA methyltransferase [Escherichia coli DEC2B]
gi|417806068|ref|ZP_12453014.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. LB226692]
gi|417833812|ref|ZP_12480259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 01-09591]
gi|417863144|ref|ZP_12508192.1| hypothetical protein C22711_0077 [Escherichia coli O104:H4 str.
C227-11]
gi|417943679|ref|ZP_12586926.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH140A]
gi|417975814|ref|ZP_12616611.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH001]
gi|418041587|ref|ZP_12679806.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W26]
gi|418267013|ref|ZP_12886456.1| 23S rRNA methyltransferase [Shigella sonnei str. Moseley]
gi|418303966|ref|ZP_12915760.1| UPF0063 protein yfgB [Escherichia coli UMNF18]
gi|418941814|ref|ZP_13495126.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H43 str. T22]
gi|418957110|ref|ZP_13509034.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J53]
gi|418997594|ref|ZP_13545188.1| 23S rRNA methyltransferase [Escherichia coli DEC1A]
gi|419003071|ref|ZP_13550595.1| 23S rRNA methyltransferase [Escherichia coli DEC1B]
gi|419008754|ref|ZP_13556185.1| 23S rRNA methyltransferase [Escherichia coli DEC1C]
gi|419014428|ref|ZP_13561776.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC1D]
gi|419019446|ref|ZP_13566752.1| 23S rRNA methyltransferase [Escherichia coli DEC1E]
gi|419024946|ref|ZP_13572172.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC2A]
gi|419029983|ref|ZP_13577144.1| 23S rRNA methyltransferase [Escherichia coli DEC2C]
gi|419035279|ref|ZP_13582365.1| 23S rRNA methyltransferase [Escherichia coli DEC2D]
gi|419040669|ref|ZP_13587697.1| 23S rRNA methyltransferase [Escherichia coli DEC2E]
gi|419143467|ref|ZP_13688205.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6A]
gi|419149288|ref|ZP_13693941.1| 23S rRNA methyltransferase [Escherichia coli DEC6B]
gi|419154916|ref|ZP_13699477.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6C]
gi|419160204|ref|ZP_13704709.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6D]
gi|419165320|ref|ZP_13709776.1| 23S rRNA methyltransferase [Escherichia coli DEC6E]
gi|419171186|ref|ZP_13715072.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7A]
gi|419176148|ref|ZP_13719964.1| 23S rRNA methyltransferase [Escherichia coli DEC7B]
gi|419181817|ref|ZP_13725430.1| 23S rRNA methyltransferase [Escherichia coli DEC7C]
gi|419187264|ref|ZP_13730778.1| 23S rRNA methyltransferase [Escherichia coli DEC7D]
gi|419192563|ref|ZP_13736015.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7E]
gi|419210746|ref|ZP_13753823.1| 23S rRNA methyltransferase [Escherichia coli DEC8C]
gi|419216607|ref|ZP_13759606.1| 23S rRNA methyltransferase [Escherichia coli DEC8D]
gi|419227872|ref|ZP_13770723.1| 23S rRNA methyltransferase [Escherichia coli DEC9A]
gi|419233595|ref|ZP_13776370.1| 23S rRNA methyltransferase [Escherichia coli DEC9B]
gi|419238885|ref|ZP_13781600.1| 23S rRNA methyltransferase [Escherichia coli DEC9C]
gi|419244362|ref|ZP_13787000.1| 23S rRNA methyltransferase [Escherichia coli DEC9D]
gi|419250173|ref|ZP_13792752.1| 23S rRNA methyltransferase [Escherichia coli DEC9E]
gi|419255999|ref|ZP_13798512.1| 23S rRNA methyltransferase [Escherichia coli DEC10A]
gi|419262309|ref|ZP_13804723.1| 23S rRNA methyltransferase [Escherichia coli DEC10B]
gi|419268253|ref|ZP_13810605.1| 23S rRNA methyltransferase [Escherichia coli DEC10C]
gi|419273750|ref|ZP_13816045.1| 23S rRNA methyltransferase [Escherichia coli DEC10D]
gi|419279050|ref|ZP_13821296.1| 23S rRNA methyltransferase [Escherichia coli DEC10E]
gi|419285217|ref|ZP_13827388.1| 23S rRNA methyltransferase [Escherichia coli DEC10F]
gi|419290445|ref|ZP_13832537.1| 23S rRNA methyltransferase [Escherichia coli DEC11A]
gi|419295839|ref|ZP_13837882.1| 23S rRNA methyltransferase [Escherichia coli DEC11B]
gi|419301234|ref|ZP_13843233.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11C]
gi|419307362|ref|ZP_13849261.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11D]
gi|419312372|ref|ZP_13854234.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11E]
gi|419317808|ref|ZP_13859610.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12A]
gi|419323957|ref|ZP_13865650.1| 23S rRNA methyltransferase [Escherichia coli DEC12B]
gi|419329946|ref|ZP_13871550.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12C]
gi|419335579|ref|ZP_13877104.1| 23S rRNA methyltransferase [Escherichia coli DEC12D]
gi|419340956|ref|ZP_13882420.1| 23S rRNA methyltransferase [Escherichia coli DEC12E]
gi|419346164|ref|ZP_13887538.1| 23S rRNA methyltransferase [Escherichia coli DEC13A]
gi|419350624|ref|ZP_13891961.1| 23S rRNA methyltransferase [Escherichia coli DEC13B]
gi|419356047|ref|ZP_13897304.1| 23S rRNA methyltransferase [Escherichia coli DEC13C]
gi|419361141|ref|ZP_13902358.1| 23S rRNA methyltransferase [Escherichia coli DEC13D]
gi|419366035|ref|ZP_13907196.1| 23S rRNA methyltransferase [Escherichia coli DEC13E]
gi|419371001|ref|ZP_13912120.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC14A]
gi|419376450|ref|ZP_13917474.1| 23S rRNA methyltransferase [Escherichia coli DEC14B]
gi|419381786|ref|ZP_13922736.1| 23S rRNA methyltransferase [Escherichia coli DEC14C]
gi|419387130|ref|ZP_13928008.1| 23S rRNA methyltransferase [Escherichia coli DEC14D]
gi|419392635|ref|ZP_13933442.1| 23S rRNA methyltransferase [Escherichia coli DEC15A]
gi|419397620|ref|ZP_13938388.1| 23S rRNA methyltransferase [Escherichia coli DEC15B]
gi|419402962|ref|ZP_13943686.1| 23S rRNA methyltransferase [Escherichia coli DEC15C]
gi|419408081|ref|ZP_13948770.1| 23S rRNA methyltransferase [Escherichia coli DEC15D]
gi|419413671|ref|ZP_13954323.1| 23S rRNA methyltransferase [Escherichia coli DEC15E]
gi|419701361|ref|ZP_14228962.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SCI-07]
gi|419803528|ref|ZP_14328698.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AI27]
gi|419810226|ref|ZP_14335108.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O32:H37 str. P4]
gi|419865991|ref|ZP_14388362.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H25 str. CVM9340]
gi|419872747|ref|ZP_14394772.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H2 str. CVM9450]
gi|419878645|ref|ZP_14400109.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9534]
gi|419885683|ref|ZP_14406371.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9545]
gi|419899550|ref|ZP_14419053.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9942]
gi|419906599|ref|ZP_14425489.1| radical SAM enzyme, Cfr family protein [Escherichia coli O26:H11
str. CVM10026]
gi|419914745|ref|ZP_14433133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD1]
gi|419920343|ref|ZP_14438461.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD2]
gi|419931193|ref|ZP_14448781.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-1]
gi|419939154|ref|ZP_14455955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
75]
gi|419947494|ref|ZP_14463840.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
HM605]
gi|419950859|ref|ZP_14467064.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CUMT8]
gi|420105077|ref|ZP_14615658.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9455]
gi|420111510|ref|ZP_14621341.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9553]
gi|420113629|ref|ZP_14623350.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10021]
gi|420119922|ref|ZP_14629165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10030]
gi|420124623|ref|ZP_14633470.1| hypothetical protein ECO10224_26979 [Escherichia coli O26:H11 str.
CVM10224]
gi|420134514|ref|ZP_14642619.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9952]
gi|420326674|ref|ZP_14828425.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CCH060]
gi|420337236|ref|ZP_14838802.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-315]
gi|420348433|ref|ZP_14849819.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
965-58]
gi|420353933|ref|ZP_14855033.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
4444-74]
gi|420359717|ref|ZP_14860687.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3226-85]
gi|420363922|ref|ZP_14864805.1| 23S rRNA methyltransferase [Shigella sonnei 4822-66]
gi|420381539|ref|ZP_14880986.1| ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae 225-75]
gi|420386570|ref|ZP_14885919.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EPECa12]
gi|420392263|ref|ZP_14891514.1| 23S rRNA methyltransferase [Escherichia coli EPEC C342-62]
gi|421683601|ref|ZP_16123394.1| 23S rRNA methyltransferase [Shigella flexneri 1485-80]
gi|421774685|ref|ZP_16211297.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AD30]
gi|422333549|ref|ZP_16414559.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
4_1_47FAA]
gi|422351899|ref|ZP_16432704.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3]
gi|422358132|ref|ZP_16438793.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3]
gi|422367766|ref|ZP_16448192.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3]
gi|422377482|ref|ZP_16457721.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1]
gi|422380266|ref|ZP_16460445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2]
gi|422752155|ref|ZP_16806059.1| cfr family protein radical SAM enzyme [Escherichia coli H252]
gi|422755899|ref|ZP_16809723.1| cfr family protein radical SAM enzyme [Escherichia coli H263]
gi|422761951|ref|ZP_16815708.1| cfr family protein radical SAM enzyme [Escherichia coli E1167]
gi|422767166|ref|ZP_16820893.1| cfr family protein radical SAM enzyme [Escherichia coli E1520]
gi|422771579|ref|ZP_16825268.1| cfr family protein radical SAM enzyme [Escherichia coli E482]
gi|422777776|ref|ZP_16831428.1| cfr family protein radical SAM enzyme [Escherichia coli H120]
gi|422780582|ref|ZP_16833367.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509]
gi|422787134|ref|ZP_16839873.1| cfr family protein radical SAM enzyme [Escherichia coli H489]
gi|422792447|ref|ZP_16845147.1| cfr family protein radical SAM enzyme [Escherichia coli TA007]
gi|422799830|ref|ZP_16848329.1| cfr family protein radical SAM enzyme [Escherichia coli M863]
gi|422819331|ref|ZP_16867542.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
M919]
gi|422830004|ref|ZP_16878166.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B093]
gi|422835597|ref|ZP_16883651.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
E101]
gi|422837412|ref|ZP_16885385.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H397]
gi|422972902|ref|ZP_16975514.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TA124]
gi|422988643|ref|ZP_16979416.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C227-11]
gi|422995535|ref|ZP_16986299.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C236-11]
gi|423000680|ref|ZP_16991434.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 09-7901]
gi|423004352|ref|ZP_16995098.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 04-8351]
gi|423010852|ref|ZP_17001586.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-3677]
gi|423020080|ref|ZP_17010789.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4404]
gi|423025246|ref|ZP_17015943.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4522]
gi|423031066|ref|ZP_17021754.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4623]
gi|423038892|ref|ZP_17029566.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423044012|ref|ZP_17034679.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423045740|ref|ZP_17036400.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423054279|ref|ZP_17043086.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423061254|ref|ZP_17050050.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|423704104|ref|ZP_17678529.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H730]
gi|423706637|ref|ZP_17681020.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B799]
gi|424754455|ref|ZP_18182369.1| hypothetical protein CFSAN001629_27610 [Escherichia coli O26:H11
str. CFSAN001629]
gi|424764628|ref|ZP_18192047.1| hypothetical protein CFSAN001630_22872 [Escherichia coli O111:H11
str. CFSAN001630]
gi|425115994|ref|ZP_18517793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0566]
gi|425120759|ref|ZP_18522455.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0569]
gi|425273667|ref|ZP_18665078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW15901]
gi|425278918|ref|ZP_18670156.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ARS4.2123]
gi|425284212|ref|ZP_18675250.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW00353]
gi|425289655|ref|ZP_18680495.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3006]
gi|425301372|ref|ZP_18691263.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
07798]
gi|425306247|ref|ZP_18695949.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
N1]
gi|425380693|ref|ZP_18764710.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1865]
gi|425423361|ref|ZP_18804529.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1288]
gi|427805698|ref|ZP_18972765.1| hypothetical protein BN16_31131 [Escherichia coli chi7122]
gi|427810194|ref|ZP_18977259.1| hypothetical protein BN17_18041 [Escherichia coli]
gi|429720107|ref|ZP_19255036.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429772008|ref|ZP_19304029.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02030]
gi|429776953|ref|ZP_19308929.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429785680|ref|ZP_19317576.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02092]
gi|429791570|ref|ZP_19323425.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02093]
gi|429792418|ref|ZP_19324268.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02281]
gi|429798994|ref|ZP_19330793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02318]
gi|429807507|ref|ZP_19339232.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02913]
gi|429812407|ref|ZP_19344091.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03439]
gi|429817928|ref|ZP_19349567.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-04080]
gi|429823140|ref|ZP_19354735.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03943]
gi|429904515|ref|ZP_19370494.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429908653|ref|ZP_19374617.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429914524|ref|ZP_19380472.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429919554|ref|ZP_19385486.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429925374|ref|ZP_19391288.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429929311|ref|ZP_19395213.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429935850|ref|ZP_19401736.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429941530|ref|ZP_19407404.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429944210|ref|ZP_19410073.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429951769|ref|ZP_19417615.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429955118|ref|ZP_19420950.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432358858|ref|ZP_19602078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE4]
gi|432363616|ref|ZP_19606780.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE5]
gi|432370740|ref|ZP_19613825.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE10]
gi|432377727|ref|ZP_19620716.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE12]
gi|432382212|ref|ZP_19625155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE15]
gi|432388027|ref|ZP_19630914.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE16]
gi|432393029|ref|ZP_19635859.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE21]
gi|432398473|ref|ZP_19641252.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE25]
gi|432407598|ref|ZP_19650306.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE28]
gi|432417998|ref|ZP_19660596.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE44]
gi|432422869|ref|ZP_19665413.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE178]
gi|432441983|ref|ZP_19684323.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE189]
gi|432447089|ref|ZP_19689388.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE191]
gi|432450649|ref|ZP_19692911.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE193]
gi|432466706|ref|ZP_19708793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE205]
gi|432471844|ref|ZP_19713888.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE206]
gi|432481867|ref|ZP_19723822.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE210]
gi|432486299|ref|ZP_19728214.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE212]
gi|432490285|ref|ZP_19732154.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE213]
gi|432501009|ref|ZP_19742766.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE216]
gi|432514823|ref|ZP_19752045.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE224]
gi|432527279|ref|ZP_19764371.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE233]
gi|432544102|ref|ZP_19780944.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE236]
gi|432549593|ref|ZP_19786359.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE237]
gi|432554564|ref|ZP_19791285.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE47]
gi|432559732|ref|ZP_19796401.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE49]
gi|432564807|ref|ZP_19801387.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE51]
gi|432574617|ref|ZP_19811095.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE55]
gi|432576780|ref|ZP_19813237.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE56]
gi|432584732|ref|ZP_19821124.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE57]
gi|432588799|ref|ZP_19825155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE58]
gi|432598523|ref|ZP_19834797.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE62]
gi|432603148|ref|ZP_19839392.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE66]
gi|432612382|ref|ZP_19848544.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE72]
gi|432617659|ref|ZP_19853772.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE75]
gi|432622748|ref|ZP_19858776.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE76]
gi|432628141|ref|ZP_19864117.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE77]
gi|432637759|ref|ZP_19873628.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE81]
gi|432647045|ref|ZP_19882834.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE86]
gi|432656680|ref|ZP_19892383.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE93]
gi|432661728|ref|ZP_19897368.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE111]
gi|432671622|ref|ZP_19907150.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE119]
gi|432675641|ref|ZP_19911097.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE142]
gi|432681127|ref|ZP_19916500.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE143]
gi|432686343|ref|ZP_19921638.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE156]
gi|432692465|ref|ZP_19927692.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE161]
gi|432695336|ref|ZP_19930534.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE162]
gi|432699951|ref|ZP_19935104.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE169]
gi|432705295|ref|ZP_19940394.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE171]
gi|432711537|ref|ZP_19946595.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE6]
gi|432714257|ref|ZP_19949294.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE8]
gi|432719665|ref|ZP_19954633.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE9]
gi|432723993|ref|ZP_19958910.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE17]
gi|432728574|ref|ZP_19963452.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE18]
gi|432733259|ref|ZP_19968088.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE45]
gi|432738008|ref|ZP_19972765.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE42]
gi|432742258|ref|ZP_19976977.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE23]
gi|432746516|ref|ZP_19981181.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE43]
gi|432750966|ref|ZP_19985568.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE29]
gi|432755351|ref|ZP_19989899.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE22]
gi|432760341|ref|ZP_19994835.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE46]
gi|432765875|ref|ZP_20000313.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE48]
gi|432771469|ref|ZP_20005794.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE50]
gi|432779421|ref|ZP_20013654.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE59]
gi|432788423|ref|ZP_20022553.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE65]
gi|432793708|ref|ZP_20027792.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE78]
gi|432799667|ref|ZP_20033688.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE79]
gi|432802712|ref|ZP_20036681.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE84]
gi|432806697|ref|ZP_20040625.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE91]
gi|432810186|ref|ZP_20044079.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE101]
gi|432816244|ref|ZP_20050027.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE115]
gi|432821869|ref|ZP_20055560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE118]
gi|432828007|ref|ZP_20061656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE123]
gi|432832574|ref|ZP_20066146.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE135]
gi|432840309|ref|ZP_20073774.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE140]
gi|432852175|ref|ZP_20082217.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE144]
gi|432869853|ref|ZP_20090446.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE147]
gi|432876262|ref|ZP_20094302.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE154]
gi|432895491|ref|ZP_20107211.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE165]
gi|432899594|ref|ZP_20110183.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE192]
gi|432905846|ref|ZP_20114646.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE194]
gi|432920496|ref|ZP_20124131.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE173]
gi|432928093|ref|ZP_20129346.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE175]
gi|432935414|ref|ZP_20134768.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE184]
gi|432938859|ref|ZP_20137102.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE183]
gi|432948364|ref|ZP_20143520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE196]
gi|432956071|ref|ZP_20147890.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE197]
gi|432962782|ref|ZP_20152314.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE202]
gi|432968596|ref|ZP_20157510.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE203]
gi|432972676|ref|ZP_20161542.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE207]
gi|432981896|ref|ZP_20170671.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE211]
gi|432986233|ref|ZP_20174954.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE215]
gi|432991624|ref|ZP_20180288.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE217]
gi|433005980|ref|ZP_20194408.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE227]
gi|433008576|ref|ZP_20196992.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE229]
gi|433014799|ref|ZP_20203141.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE104]
gi|433024371|ref|ZP_20212352.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE106]
gi|433029455|ref|ZP_20217311.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE109]
gi|433034343|ref|ZP_20222052.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE112]
gi|433039522|ref|ZP_20227120.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE113]
gi|433044069|ref|ZP_20231563.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE117]
gi|433048933|ref|ZP_20236280.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE120]
gi|433063957|ref|ZP_20250876.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE125]
gi|433073746|ref|ZP_20260397.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE129]
gi|433078697|ref|ZP_20265225.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE131]
gi|433083431|ref|ZP_20269887.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE133]
gi|433092891|ref|ZP_20279155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE138]
gi|433097338|ref|ZP_20283521.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE139]
gi|433102057|ref|ZP_20288137.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE145]
gi|433106782|ref|ZP_20292754.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE148]
gi|433111758|ref|ZP_20297619.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE150]
gi|433121076|ref|ZP_20306746.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE157]
gi|433131059|ref|ZP_20316494.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE163]
gi|433135727|ref|ZP_20321068.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE166]
gi|433145120|ref|ZP_20330261.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE168]
gi|433154598|ref|ZP_20339536.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE176]
gi|433164411|ref|ZP_20349146.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE179]
gi|433169485|ref|ZP_20354110.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE180]
gi|433174419|ref|ZP_20358941.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE232]
gi|433184221|ref|ZP_20368466.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE85]
gi|433189257|ref|ZP_20373354.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE88]
gi|433194574|ref|ZP_20378560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE90]
gi|433199174|ref|ZP_20383071.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE94]
gi|433204186|ref|ZP_20387953.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE95]
gi|433322937|ref|ZP_20400326.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J96]
gi|442592524|ref|ZP_21010499.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|442599048|ref|ZP_21016783.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|443618572|ref|YP_007382428.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
APEC O78]
gi|450191399|ref|ZP_21891208.1| hypothetical protein A364_12928 [Escherichia coli SEPT362]
gi|450219669|ref|ZP_21896211.1| hypothetical protein C202_12205 [Escherichia coli O08]
gi|450246570|ref|ZP_21901007.1| hypothetical protein C201_11682 [Escherichia coli S17]
gi|549552|sp|P36979.1|RLMN_ECOLI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123084401|sp|Q1R8L6.1|RLMN_ECOUT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123147826|sp|Q0TEW8.1|RLMN_ECOL5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123728531|sp|Q32D45.1|RLMN_SHIDS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123755559|sp|Q31XX3.1|RLMN_SHIBS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123773477|sp|Q3YZ35.1|RLMN_SHISS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829749|sp|A7ZPW0.1|RLMN_ECO24 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829750|sp|B1XAZ2.1|RLMN_ECODH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829752|sp|A1AE55.1|RLMN_ECOK1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829753|sp|B1IWE4.1|RLMN_ECOLC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829754|sp|B1LNH2.1|RLMN_ECOSM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829888|sp|B2TXU2.1|RLMN_SHIB3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807172|sp|B7UGW3.1|RLMN_ECO27 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807173|sp|B7MI02.1|RLMN_ECO45 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807174|sp|B7LDA9.1|RLMN_ECO55 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807176|sp|B7NRG7.1|RLMN_ECO7I RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807177|sp|B7N304.1|RLMN_ECO81 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807178|sp|B7M7M1.1|RLMN_ECO8A RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807180|sp|B6I589.1|RLMN_ECOSE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|259491986|sp|C4ZX92.1|RLMN_ECOBW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|493519|gb|AAA21359.1| unknown [Escherichia coli]
gi|1788865|gb|AAC75570.1| dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37
methyltransferase, SAM-dependent [Escherichia coli str.
K-12 substr. MG1655]
gi|1799916|dbj|BAA16404.1| hypothetical protein [Escherichia coli str. K12 substr. W3110]
gi|73856520|gb|AAZ89227.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81242050|gb|ABB62760.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|81246377|gb|ABB67085.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|91073417|gb|ABE08298.1| hypothetical protein UTI89_C2838 [Escherichia coli UTI89]
gi|110344274|gb|ABG70511.1| hypothetical protein YfgB (putative Fe-S-cluster redox enzyme)
[Escherichia coli 536]
gi|115513870|gb|ABJ01945.1| putative Fe-S-cluster redox enzyme [Escherichia coli APEC O1]
gi|157079868|gb|ABV19576.1| radical SAM enzyme, Cfr family [Escherichia coli E24377A]
gi|169754128|gb|ACA76827.1| radical SAM enzyme, Cfr family [Escherichia coli ATCC 8739]
gi|169889962|gb|ACB03669.1| predicted enzyme [Escherichia coli str. K-12 substr. DH10B]
gi|170521524|gb|ACB19702.1| radical SAM enzyme, Cfr family [Escherichia coli SMS-3-5]
gi|187428360|gb|ACD07634.1| radical SAM enzyme, Cfr family [Shigella boydii CDC 3083-94]
gi|188487011|gb|EDU62114.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
gi|190902278|gb|EDV62018.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
gi|190907091|gb|EDV66691.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
gi|192929344|gb|EDV82953.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
gi|194414649|gb|EDX30921.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
gi|194423369|gb|EDX39360.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
gi|209913253|dbj|BAG78327.1| conserved hypothetical protein [Escherichia coli SE11]
gi|215265939|emb|CAS10348.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69]
gi|218352876|emb|CAU98675.1| putative Fe-S containing enzyme [Escherichia coli 55989]
gi|218361810|emb|CAQ99409.1| putative Fe-S containing enzyme [Escherichia coli IAI1]
gi|218366212|emb|CAR03960.1| putative Fe-S containing enzyme [Escherichia coli S88]
gi|218371013|emb|CAR18841.1| putative Fe-S containing enzyme [Escherichia coli IAI39]
gi|218428201|emb|CAV17847.1| putative Fe-S containing enzyme [Escherichia coli ED1a]
gi|222034228|emb|CAP76969.1| UPF0063 protein yfgB [Escherichia coli LF82]
gi|226901393|gb|EEH87652.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
3_2_53FAA]
gi|238862352|gb|ACR64350.1| predicted enzyme [Escherichia coli BW2952]
gi|242378115|emb|CAQ32888.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)]
gi|253323633|gb|ACT28235.1| radical SAM enzyme, Cfr family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974392|gb|ACT40063.1| predicted enzyme [Escherichia coli B str. REL606]
gi|253978559|gb|ACT44229.1| predicted enzyme [Escherichia coli BL21(DE3)]
gi|257755260|dbj|BAI26762.1| predicted enzyme [Escherichia coli O26:H11 str. 11368]
gi|257760294|dbj|BAI31791.1| predicted enzyme [Escherichia coli O103:H2 str. 12009]
gi|260448403|gb|ACX38825.1| radical SAM enzyme, Cfr family [Escherichia coli DH1]
gi|281179571|dbj|BAI55901.1| conserved hypothetical protein [Escherichia coli SE15]
gi|284922467|emb|CBG35554.1| radical SAM superfamily protein [Escherichia coli 042]
gi|291323700|gb|EFE63128.1| cfr family radical SAM enzyme [Escherichia coli B088]
gi|291471399|gb|EFF13883.1| cfr family radical SAM enzyme [Escherichia coli B354]
gi|294492482|gb|ADE91238.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli IHE3034]
gi|299881276|gb|EFI89487.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
gi|300304052|gb|EFJ58572.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
gi|300314505|gb|EFJ64289.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
gi|300396418|gb|EFJ79956.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
gi|300403741|gb|EFJ87279.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
gi|300416890|gb|EFK00201.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
gi|300448975|gb|EFK12595.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
gi|300454928|gb|EFK18421.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
gi|300461963|gb|EFK25456.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
gi|300526566|gb|EFK47635.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
gi|300529701|gb|EFK50763.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
gi|300841809|gb|EFK69569.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
gi|300843621|gb|EFK71381.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
gi|301073659|gb|EFK88465.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
gi|305851807|gb|EFM52259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NC101]
gi|306907411|gb|EFN37915.1| radical SAM enzyme, Cfr family [Escherichia coli W]
gi|307625927|gb|ADN70231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UM146]
gi|308121892|gb|EFO59154.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
gi|308927102|gb|EFP72576.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
gi|309702849|emb|CBJ02180.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
gi|312289853|gb|EFR17741.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
gi|312947094|gb|ADR27921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O83:H1 str. NRG 857C]
gi|315061836|gb|ADT76163.1| radical SAM protein [Escherichia coli W]
gi|315137141|dbj|BAJ44300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DH1]
gi|315256537|gb|EFU36505.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1]
gi|315288069|gb|EFU47469.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3]
gi|315300476|gb|EFU59705.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3]
gi|315615776|gb|EFU96408.1| UPF0063 protein yfgB [Escherichia coli 3431]
gi|320175080|gb|EFW50193.1| Ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae CDC 74-1112]
gi|320180507|gb|EFW55438.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii
ATCC 9905]
gi|320185217|gb|EFW59997.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CDC 796-83]
gi|320196354|gb|EFW70978.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
WV_060327]
gi|320200081|gb|EFW74670.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4100B]
gi|323156172|gb|EFZ42331.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14]
gi|323159387|gb|EFZ45372.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010]
gi|323169039|gb|EFZ54716.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G]
gi|323170210|gb|EFZ55863.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68]
gi|323184422|gb|EFZ69797.1| hypothetical protein ECOK1357_2143 [Escherichia coli OK1357]
gi|323188365|gb|EFZ73657.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1]
gi|323377583|gb|ADX49851.1| radical SAM enzyme, Cfr family [Escherichia coli KO11FL]
gi|323936410|gb|EGB32700.1| cfr family protein radical SAM enzyme [Escherichia coli E1520]
gi|323941221|gb|EGB37406.1| cfr family protein radical SAM enzyme [Escherichia coli E482]
gi|323944739|gb|EGB40806.1| cfr family protein radical SAM enzyme [Escherichia coli H120]
gi|323949177|gb|EGB45068.1| cfr family protein radical SAM enzyme [Escherichia coli H252]
gi|323955758|gb|EGB51516.1| cfr family protein radical SAM enzyme [Escherichia coli H263]
gi|323961333|gb|EGB56945.1| cfr family protein radical SAM enzyme [Escherichia coli H489]
gi|323967965|gb|EGB63377.1| cfr family protein radical SAM enzyme [Escherichia coli M863]
gi|323971070|gb|EGB66318.1| cfr family protein radical SAM enzyme [Escherichia coli TA007]
gi|323977300|gb|EGB72386.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509]
gi|324008525|gb|EGB77744.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2]
gi|324011226|gb|EGB80445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1]
gi|324020077|gb|EGB89296.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3]
gi|324118139|gb|EGC12036.1| cfr family protein radical SAM enzyme [Escherichia coli E1167]
gi|327252224|gb|EGE63896.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v]
gi|330912292|gb|EGH40802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AA86]
gi|331039935|gb|EGI12155.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
gi|331043074|gb|EGI15214.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
gi|331048794|gb|EGI20870.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
gi|331054327|gb|EGI26354.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
gi|331059879|gb|EGI31856.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
gi|331064457|gb|EGI36368.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
gi|331069245|gb|EGI40637.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
gi|331074968|gb|EGI46288.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
gi|331079117|gb|EGI50319.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
gi|332092803|gb|EGI97872.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74]
gi|332100682|gb|EGJ04028.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
gi|332344389|gb|AEE57723.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|333970625|gb|AEG37430.1| Ribosomal RNA large subunit methyltransferase [Escherichia coli
NA114]
gi|338769630|gb|EGP24409.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
PCN033]
gi|339416064|gb|AEJ57736.1| UPF0063 protein yfgB [Escherichia coli UMNF18]
gi|340733456|gb|EGR62587.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 01-09591]
gi|340739363|gb|EGR73598.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. LB226692]
gi|341916433|gb|EGT66050.1| hypothetical protein C22711_0077 [Escherichia coli O104:H4 str.
C227-11]
gi|342364541|gb|EGU28641.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH140A]
gi|342930490|gb|EGU99212.1| radical SAM enzyme, Cfr family [Escherichia coli MS 79-10]
gi|344194583|gb|EGV48656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH001]
gi|345337791|gb|EGW70223.1| hypothetical protein ECSTECB2F1_2692 [Escherichia coli STEC_B2F1]
gi|345350837|gb|EGW83112.1| hypothetical protein ECSTEC94C_2978 [Escherichia coli STEC_94C]
gi|345352349|gb|EGW84598.1| hypothetical protein EC30301_2964 [Escherichia coli 3030-1]
gi|345362177|gb|EGW94334.1| hypothetical protein ECSTECEH250_3049 [Escherichia coli STEC_EH250]
gi|345372563|gb|EGX04527.1| hypothetical protein ECSTECMHI813_2745 [Escherichia coli
STEC_MHI813]
gi|345375815|gb|EGX07762.1| hypothetical protein ECG581_2915 [Escherichia coli G58-1]
gi|345377433|gb|EGX09365.1| hypothetical protein ECSTECH18_3233 [Escherichia coli STEC_H.1.8]
gi|345387029|gb|EGX16858.1| hypothetical protein ECSTECS1191_3417 [Escherichia coli STEC_S1191]
gi|345393272|gb|EGX23050.1| hypothetical protein ECTX1999_2984 [Escherichia coli TX1999]
gi|349738991|gb|AEQ13697.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O7:K1 str. CE10]
gi|354862370|gb|EHF22808.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C236-11]
gi|354867654|gb|EHF28076.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C227-11]
gi|354868755|gb|EHF29168.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 04-8351]
gi|354873651|gb|EHF34028.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 09-7901]
gi|354880335|gb|EHF40671.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-3677]
gi|354889124|gb|EHF49377.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4404]
gi|354893354|gb|EHF53558.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4522]
gi|354894305|gb|EHF54501.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354897097|gb|EHF57258.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4623]
gi|354898461|gb|EHF58615.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354912229|gb|EHF72230.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|354915185|gb|EHF75165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354917419|gb|EHF77385.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|355350895|gb|EHG00090.1| methyltransferase [Escherichia coli cloneA_i1]
gi|359332826|dbj|BAL39273.1| predicted enzyme [Escherichia coli str. K-12 substr. MDS42]
gi|371597535|gb|EHN86356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TA124]
gi|371607191|gb|EHN95769.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B093]
gi|371612209|gb|EHO00725.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
E101]
gi|371615228|gb|EHO03656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H397]
gi|373245520|gb|EHP64988.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
4_1_47FAA]
gi|375322871|gb|EHS68604.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H43 str. T22]
gi|377843421|gb|EHU08461.1| 23S rRNA methyltransferase [Escherichia coli DEC1A]
gi|377844272|gb|EHU09309.1| 23S rRNA methyltransferase [Escherichia coli DEC1C]
gi|377846674|gb|EHU11681.1| 23S rRNA methyltransferase [Escherichia coli DEC1B]
gi|377856396|gb|EHU21256.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC1D]
gi|377859449|gb|EHU24280.1| 23S rRNA methyltransferase [Escherichia coli DEC1E]
gi|377863730|gb|EHU28535.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC2A]
gi|377873348|gb|EHU37985.1| 23S rRNA methyltransferase [Escherichia coli DEC2B]
gi|377876983|gb|EHU41581.1| 23S rRNA methyltransferase [Escherichia coli DEC2C]
gi|377879635|gb|EHU44207.1| 23S rRNA methyltransferase [Escherichia coli DEC2D]
gi|377890709|gb|EHU55166.1| 23S rRNA methyltransferase [Escherichia coli DEC2E]
gi|377992410|gb|EHV55557.1| 23S rRNA methyltransferase [Escherichia coli DEC6B]
gi|377993980|gb|EHV57111.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6A]
gi|377995849|gb|EHV58960.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6C]
gi|378007548|gb|EHV70517.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6D]
gi|378009772|gb|EHV72726.1| 23S rRNA methyltransferase [Escherichia coli DEC6E]
gi|378015230|gb|EHV78127.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7A]
gi|378023450|gb|EHV86127.1| 23S rRNA methyltransferase [Escherichia coli DEC7C]
gi|378029256|gb|EHV91872.1| 23S rRNA methyltransferase [Escherichia coli DEC7D]
gi|378032120|gb|EHV94702.1| 23S rRNA methyltransferase [Escherichia coli DEC7B]
gi|378037916|gb|EHW00438.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7E]
gi|378053442|gb|EHW15742.1| 23S rRNA methyltransferase [Escherichia coli DEC8C]
gi|378060798|gb|EHW22986.1| 23S rRNA methyltransferase [Escherichia coli DEC8D]
gi|378073270|gb|EHW35323.1| 23S rRNA methyltransferase [Escherichia coli DEC9A]
gi|378076654|gb|EHW38658.1| 23S rRNA methyltransferase [Escherichia coli DEC9B]
gi|378083924|gb|EHW45855.1| 23S rRNA methyltransferase [Escherichia coli DEC9C]
gi|378090298|gb|EHW52138.1| 23S rRNA methyltransferase [Escherichia coli DEC9D]
gi|378094148|gb|EHW55950.1| 23S rRNA methyltransferase [Escherichia coli DEC9E]
gi|378099465|gb|EHW61171.1| 23S rRNA methyltransferase [Escherichia coli DEC10A]
gi|378104989|gb|EHW66637.1| 23S rRNA methyltransferase [Escherichia coli DEC10B]
gi|378110904|gb|EHW72498.1| 23S rRNA methyltransferase [Escherichia coli DEC10C]
gi|378116237|gb|EHW77770.1| 23S rRNA methyltransferase [Escherichia coli DEC10D]
gi|378127751|gb|EHW89139.1| 23S rRNA methyltransferase [Escherichia coli DEC10E]
gi|378130246|gb|EHW91616.1| 23S rRNA methyltransferase [Escherichia coli DEC11A]
gi|378130561|gb|EHW91925.1| 23S rRNA methyltransferase [Escherichia coli DEC10F]
gi|378140564|gb|EHX01787.1| 23S rRNA methyltransferase [Escherichia coli DEC11B]
gi|378148345|gb|EHX09485.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11D]
gi|378150850|gb|EHX11965.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11C]
gi|378158000|gb|EHX19031.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11E]
gi|378165033|gb|EHX25974.1| 23S rRNA methyltransferase [Escherichia coli DEC12B]
gi|378168501|gb|EHX29405.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12A]
gi|378170262|gb|EHX31148.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12C]
gi|378181011|gb|EHX41688.1| 23S rRNA methyltransferase [Escherichia coli DEC12D]
gi|378185612|gb|EHX46237.1| 23S rRNA methyltransferase [Escherichia coli DEC13A]
gi|378187867|gb|EHX48478.1| 23S rRNA methyltransferase [Escherichia coli DEC12E]
gi|378199885|gb|EHX60344.1| 23S rRNA methyltransferase [Escherichia coli DEC13B]
gi|378200309|gb|EHX60765.1| 23S rRNA methyltransferase [Escherichia coli DEC13C]
gi|378202788|gb|EHX63215.1| 23S rRNA methyltransferase [Escherichia coli DEC13D]
gi|378212344|gb|EHX72667.1| 23S rRNA methyltransferase [Escherichia coli DEC13E]
gi|378217595|gb|EHX77874.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC14A]
gi|378219173|gb|EHX79442.1| 23S rRNA methyltransferase [Escherichia coli DEC14B]
gi|378227429|gb|EHX87601.1| 23S rRNA methyltransferase [Escherichia coli DEC14C]
gi|378231657|gb|EHX91768.1| 23S rRNA methyltransferase [Escherichia coli DEC14D]
gi|378236829|gb|EHX96868.1| 23S rRNA methyltransferase [Escherichia coli DEC15A]
gi|378243741|gb|EHY03687.1| 23S rRNA methyltransferase [Escherichia coli DEC15B]
gi|378247496|gb|EHY07415.1| 23S rRNA methyltransferase [Escherichia coli DEC15C]
gi|378254460|gb|EHY14324.1| 23S rRNA methyltransferase [Escherichia coli DEC15D]
gi|378259103|gb|EHY18919.1| 23S rRNA methyltransferase [Escherichia coli DEC15E]
gi|380347562|gb|EIA35849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SCI-07]
gi|383103950|gb|AFG41459.1| hypothetical protein P12B_c2617 [Escherichia coli P12b]
gi|383392064|gb|AFH17022.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KO11FL]
gi|383406099|gb|AFH12342.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W]
gi|383475446|gb|EID67406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W26]
gi|384379757|gb|EIE37624.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J53]
gi|384473440|gb|EIE57481.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AI27]
gi|385156948|gb|EIF18942.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O32:H37 str. P4]
gi|385537110|gb|EIF83993.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
M919]
gi|385707220|gb|EIG44252.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H730]
gi|385711602|gb|EIG48560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B799]
gi|386121723|gb|EIG70338.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
4_1_40B]
gi|386140612|gb|EIG81764.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2741]
gi|386153186|gb|EIH04475.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0588]
gi|386156104|gb|EIH12451.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0259]
gi|386163844|gb|EIH25639.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2264]
gi|386168554|gb|EIH35070.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.0497]
gi|386172778|gb|EIH44792.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 99.0741]
gi|386178012|gb|EIH55491.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2608]
gi|386183133|gb|EIH65884.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 93.0624]
gi|386201787|gb|EII00778.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.154]
gi|386204145|gb|EII08656.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0959]
gi|386213730|gb|EII24155.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 9.0111]
gi|386218741|gb|EII35224.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0967]
gi|386224810|gb|EII47145.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.3916]
gi|386227812|gb|EII55168.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.3884]
gi|386236391|gb|EII68367.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.4168]
gi|386239173|gb|EII76107.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2303]
gi|386245149|gb|EII86879.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3003]
gi|386249965|gb|EII96134.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli TW07793]
gi|386252944|gb|EIJ02634.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli B41]
gi|386256702|gb|EIJ12196.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 900105 (10e)]
gi|388333720|gb|EIL00337.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H2 str. CVM9450]
gi|388334450|gb|EIL01041.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9534]
gi|388336172|gb|EIL02719.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H25 str. CVM9340]
gi|388348459|gb|EIL14054.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9545]
gi|388378693|gb|EIL41407.1| radical SAM enzyme, Cfr family protein [Escherichia coli O26:H11
str. CVM10026]
gi|388379687|gb|EIL42334.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9942]
gi|388384875|gb|EIL46581.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD2]
gi|388385715|gb|EIL47386.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD1]
gi|388398928|gb|EIL59739.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-1]
gi|388408645|gb|EIL68986.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
75]
gi|388410502|gb|EIL70726.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
HM605]
gi|388415965|gb|EIL75872.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CUMT8]
gi|391250191|gb|EIQ09414.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CCH060]
gi|391260114|gb|EIQ19179.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-315]
gi|391268909|gb|EIQ27828.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
965-58]
gi|391277266|gb|EIQ36016.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
4444-74]
gi|391281287|gb|EIQ39939.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3226-85]
gi|391283880|gb|EIQ42489.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3233-85]
gi|391293585|gb|EIQ51844.1| 23S rRNA methyltransferase [Shigella sonnei 4822-66]
gi|391299858|gb|EIQ57797.1| ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae 225-75]
gi|391304857|gb|EIQ62659.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EPECa12]
gi|391312030|gb|EIQ69653.1| 23S rRNA methyltransferase [Escherichia coli EPEC C342-62]
gi|394396699|gb|EJE73031.1| hypothetical protein ECO10224_26979 [Escherichia coli O26:H11 str.
CVM10224]
gi|394398243|gb|EJE74431.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9553]
gi|394400229|gb|EJE76165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9455]
gi|394411219|gb|EJE85490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10021]
gi|394421284|gb|EJE94760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9952]
gi|394430590|gb|EJF02904.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10030]
gi|397785065|gb|EJK95918.1| hypothetical protein ECSTECO31_2736 [Escherichia coli STEC_O31]
gi|397899130|gb|EJL15506.1| 23S rRNA methyltransferase [Shigella sonnei str. Moseley]
gi|404337957|gb|EJZ64405.1| 23S rRNA methyltransferase [Shigella flexneri 1485-80]
gi|406776653|gb|AFS56077.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|407053222|gb|AFS73273.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2011C-3493]
gi|407066448|gb|AFS87495.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|408192944|gb|EKI18503.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW15901]
gi|408200543|gb|EKI25720.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ARS4.2123]
gi|408201389|gb|EKI26544.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW00353]
gi|408212764|gb|EKI37277.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
07798]
gi|408213030|gb|EKI37534.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3006]
gi|408227879|gb|EKI51448.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
N1]
gi|408295564|gb|EKJ13869.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1865]
gi|408343253|gb|EKJ57657.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1288]
gi|408460433|gb|EKJ84212.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AD30]
gi|408567706|gb|EKK43760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0566]
gi|408568509|gb|EKK44540.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0569]
gi|412963880|emb|CCK47806.1| hypothetical protein BN16_31131 [Escherichia coli chi7122]
gi|412970373|emb|CCJ45019.1| hypothetical protein BN17_18041 [Escherichia coli]
gi|421933102|gb|EKT90896.1| hypothetical protein CFSAN001629_27610 [Escherichia coli O26:H11
str. CFSAN001629]
gi|421937594|gb|EKT95203.1| hypothetical protein CFSAN001630_22872 [Escherichia coli O111:H11
str. CFSAN001630]
gi|429348258|gb|EKY85028.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02092]
gi|429359004|gb|EKY95670.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02030]
gi|429361335|gb|EKY97990.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02093]
gi|429361642|gb|EKY98295.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429364282|gb|EKZ00902.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02318]
gi|429375131|gb|EKZ11669.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02913]
gi|429376288|gb|EKZ12817.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02281]
gi|429378597|gb|EKZ15105.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03439]
gi|429379461|gb|EKZ15961.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03943]
gi|429391164|gb|EKZ27569.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-04080]
gi|429405528|gb|EKZ41794.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429406064|gb|EKZ42325.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429409969|gb|EKZ46194.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429413881|gb|EKZ50061.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429420659|gb|EKZ56784.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429428831|gb|EKZ64906.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429432384|gb|EKZ68424.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429436590|gb|EKZ72606.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429438795|gb|EKZ74788.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429447164|gb|EKZ83088.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429451417|gb|EKZ87308.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429458075|gb|EKZ93913.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0466]
gi|430876278|gb|ELB99797.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE4]
gi|430884544|gb|ELC07483.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE10]
gi|430885821|gb|ELC08691.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE5]
gi|430897747|gb|ELC19941.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE12]
gi|430905530|gb|ELC27139.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE16]
gi|430907687|gb|ELC29185.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE15]
gi|430914721|gb|ELC35816.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE25]
gi|430918185|gb|ELC39224.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE21]
gi|430929072|gb|ELC49593.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE28]
gi|430938103|gb|ELC58346.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE44]
gi|430943605|gb|ELC63712.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE178]
gi|430966437|gb|ELC83845.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE189]
gi|430973362|gb|ELC90330.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE191]
gi|430979141|gb|ELC95927.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE193]
gi|430992989|gb|ELD09348.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE205]
gi|430997586|gb|ELD13847.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE206]
gi|431006389|gb|ELD21395.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE210]
gi|431015508|gb|ELD29063.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE212]
gi|431019737|gb|ELD33131.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE213]
gi|431028586|gb|ELD41630.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE216]
gi|431041209|gb|ELD51740.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE224]
gi|431063099|gb|ELD72356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE233]
gi|431073852|gb|ELD81490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE236]
gi|431079225|gb|ELD86195.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE237]
gi|431083229|gb|ELD89536.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE47]
gi|431090952|gb|ELD96703.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE49]
gi|431092778|gb|ELD98459.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE51]
gi|431107064|gb|ELE11252.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE55]
gi|431114454|gb|ELE17996.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE56]
gi|431115486|gb|ELE18989.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE57]
gi|431121132|gb|ELE24130.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE58]
gi|431130036|gb|ELE32145.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE62]
gi|431141722|gb|ELE43487.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE66]
gi|431148556|gb|ELE49847.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE72]
gi|431153647|gb|ELE54551.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE75]
gi|431158408|gb|ELE59007.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE76]
gi|431162752|gb|ELE63193.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE77]
gi|431170499|gb|ELE70692.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE81]
gi|431179700|gb|ELE79592.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE86]
gi|431190546|gb|ELE89945.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE93]
gi|431198687|gb|ELE97470.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE111]
gi|431209904|gb|ELF07971.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE119]
gi|431213448|gb|ELF11322.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE142]
gi|431219857|gb|ELF17246.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE143]
gi|431221063|gb|ELF18385.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE156]
gi|431226395|gb|ELF23560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE161]
gi|431233424|gb|ELF29015.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE162]
gi|431242177|gb|ELF36598.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE171]
gi|431242927|gb|ELF37317.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE169]
gi|431248489|gb|ELF42683.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE6]
gi|431256107|gb|ELF49184.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE8]
gi|431261858|gb|ELF53881.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE9]
gi|431264585|gb|ELF56290.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE17]
gi|431273126|gb|ELF64224.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE18]
gi|431274468|gb|ELF65525.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE45]
gi|431281797|gb|ELF72696.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE42]
gi|431283949|gb|ELF74808.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE23]
gi|431291054|gb|ELF81577.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE43]
gi|431295984|gb|ELF85714.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE29]
gi|431301781|gb|ELF90982.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE22]
gi|431307995|gb|ELF96285.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE46]
gi|431310050|gb|ELF98243.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE48]
gi|431313935|gb|ELG01890.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE50]
gi|431326237|gb|ELG13599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE59]
gi|431336618|gb|ELG23726.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE65]
gi|431339371|gb|ELG26433.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE78]
gi|431342775|gb|ELG29746.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE79]
gi|431347854|gb|ELG34731.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE84]
gi|431354839|gb|ELG41565.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE91]
gi|431362954|gb|ELG49532.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE101]
gi|431363659|gb|ELG50212.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE115]
gi|431367521|gb|ELG53998.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE118]
gi|431371495|gb|ELG57204.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE123]
gi|431374852|gb|ELG60197.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE135]
gi|431388343|gb|ELG72079.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE140]
gi|431399431|gb|ELG82838.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE144]
gi|431410439|gb|ELG93601.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE147]
gi|431419784|gb|ELH02124.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE154]
gi|431421858|gb|ELH04070.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE165]
gi|431425723|gb|ELH07791.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE192]
gi|431431917|gb|ELH13691.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE194]
gi|431441698|gb|ELH22806.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE173]
gi|431443058|gb|ELH24136.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE175]
gi|431452197|gb|ELH32646.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE184]
gi|431458342|gb|ELH38679.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE196]
gi|431462845|gb|ELH43052.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE183]
gi|431466922|gb|ELH46938.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE197]
gi|431470012|gb|ELH49936.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE203]
gi|431472656|gb|ELH52543.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE202]
gi|431480814|gb|ELH60530.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE207]
gi|431491205|gb|ELH70812.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE211]
gi|431495706|gb|ELH75292.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE217]
gi|431499127|gb|ELH78308.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE215]
gi|431513678|gb|ELH91760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE227]
gi|431523191|gb|ELI00335.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE229]
gi|431529785|gb|ELI06480.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE104]
gi|431534432|gb|ELI10915.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE106]
gi|431542507|gb|ELI17674.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE109]
gi|431549735|gb|ELI23811.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE112]
gi|431550634|gb|ELI24623.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE113]
gi|431555375|gb|ELI29217.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE117]
gi|431563710|gb|ELI36908.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE120]
gi|431580743|gb|ELI53300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE125]
gi|431587114|gb|ELI58495.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE129]
gi|431595821|gb|ELI65808.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE131]
gi|431601555|gb|ELI71071.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE133]
gi|431609574|gb|ELI78891.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE138]
gi|431614919|gb|ELI84053.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE139]
gi|431618336|gb|ELI87310.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE145]
gi|431626490|gb|ELI95039.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE148]
gi|431627501|gb|ELI95903.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE150]
gi|431641776|gb|ELJ09510.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE157]
gi|431645856|gb|ELJ13400.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE163]
gi|431655655|gb|ELJ22686.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE166]
gi|431660749|gb|ELJ27612.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE168]
gi|431673120|gb|ELJ39350.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE176]
gi|431686686|gb|ELJ52246.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE179]
gi|431686833|gb|ELJ52389.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE180]
gi|431691631|gb|ELJ57089.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE232]
gi|431705174|gb|ELJ69772.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE88]
gi|431705318|gb|ELJ69915.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE85]
gi|431715074|gb|ELJ79243.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE90]
gi|431720133|gb|ELJ84167.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE95]
gi|431720559|gb|ELJ84586.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE94]
gi|432348510|gb|ELL42960.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J96]
gi|441607795|emb|CCP95946.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441652218|emb|CCQ02280.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|443423080|gb|AGC87984.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
APEC O78]
gi|449316974|gb|EMD07070.1| hypothetical protein C202_12205 [Escherichia coli O08]
gi|449319217|gb|EMD09272.1| hypothetical protein C201_11682 [Escherichia coli S17]
gi|449319546|gb|EMD09595.1| hypothetical protein A364_12928 [Escherichia coli SEPT362]
Length = 384
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|241890016|ref|ZP_04777314.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379]
gi|241863638|gb|EER68022.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379]
Length = 377
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 153/240 (63%), Gaps = 8/240 (3%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-----SRLSNIRNVVFMGM 88
++LC+++QVGC++GC FCA+ G K NL +GEIV Q++ + I ++V MG+
Sbjct: 119 NSLCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQELDKKGERISSIVIMGI 178
Query: 89 GEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEP NY +++ +RI+ + F + + ITVST GIV I F ++ +N AVSLHAP
Sbjct: 179 GEPFENYDEMMDFIRIVNSDESFNIGARHITVSTSGIVPKIYDFANEKVQINFAVSLHAP 238
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
++R +IMP RA+ ++KLM ALK YQ+ + ++I EY ++ VND+++HA +L ++++
Sbjct: 239 TNELRSKIMPVNRAYNIDKLMEALKYYQETTNRRITFEYGLMGKVNDQKEHAEKLSEIIK 298
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLIP N + + RTS D + +F+K+L+ + + T+R+ G DI ACGQL
Sbjct: 299 GLNCHVNLIPINYVPERNYVRTSKSD-IFAFEKVLKKN-KVNVTIRRTQGDDIDAACGQL 356
>gi|213028233|ref|ZP_03342680.1| hypothetical protein Salmonelentericaenterica_40390 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 356
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 82 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 141
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 142 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 200
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 201 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 260
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 261 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 318
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 319 RGDDIDAACGQLAGDVIDR 337
>gi|437838913|ref|ZP_20846081.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. SARB17]
gi|435298122|gb|ELO74366.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. SARB17]
Length = 347
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 73 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 132
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 133 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 191
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 192 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 251
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 252 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 309
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 310 RGDDIDAACGQLAGDVIDR 328
>gi|366160142|ref|ZP_09460004.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
TW09308]
gi|432373144|ref|ZP_19616182.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE11]
gi|430895150|gb|ELC17421.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE11]
Length = 384
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|432863380|ref|ZP_20087427.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE146]
gi|431403978|gb|ELG87238.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE146]
Length = 384
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|406884801|gb|EKD32142.1| hypothetical protein ACD_77C00170G0008 [uncultured bacterium]
Length = 343
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 148/240 (61%), Gaps = 4/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLC+SSQ GCKMGC FC T +GF +LS+GEI+ Q ++ + NVV+MGM
Sbjct: 96 PEEERATLCVSSQSGCKMGCLFCMTAKLGFNGHLSAGEIISQFINIEESEKLTNVVYMGM 155
Query: 89 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEPL+N + +++ I+T F SPKRIT+ST+G+ A+ +F + +LAVSLH P
Sbjct: 156 GEPLDNATEVFKSIEILTADWGFGWSPKRITLSTIGVYPALKEFLEN-SKCHLAVSLHNP 214
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
+D R Q+MP +A+P+ + ++ +K Y Q+++ EYIM +G ND ++HA L ++L
Sbjct: 215 FEDERMQLMPMQKAYPIAETISLIKNYDFTGQRRVSFEYIMFNGWNDTKRHADGLIRMLR 274
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +NLI F+ I S + S + FQ L + + TT+R G+DI ACGQL
Sbjct: 275 GLECRINLIRFHEIPDFS-LKASPLGMIEHFQSRLNKA-GLITTIRSSRGEDILAACGQL 332
>gi|422339618|ref|ZP_16420576.1| radical SAM enzyme, Cfr family [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370761|gb|EHG18140.1| radical SAM enzyme, Cfr family [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 358
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 156/273 (57%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++GG +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDGGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++ +S
Sbjct: 138 NLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LAVSLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAVSLHSAINEKRDKIIPINKNFPLEDLSAVLVEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK +++++ EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKRTKRRVTFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|417392623|ref|ZP_12155396.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Minnesota
str. A4-603]
gi|353611246|gb|EHC63965.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Minnesota
str. A4-603]
Length = 363
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 89 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 148
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 149 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 207
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 208 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 267
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 268 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 325
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 326 RGDDIDAACGQLAGDVIDR 344
>gi|118578868|ref|YP_900118.1| ribosomal RNA large subunit methyltransferase N [Pelobacter
propionicus DSM 2379]
gi|205829797|sp|A1AL40.1|RLMN_PELPD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|118501578|gb|ABK98060.1| 23S rRNA m(2)A-2503 methyltransferase [Pelobacter propionicus DSM
2379]
Length = 347
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 147/240 (61%), Gaps = 3/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLCISSQVGC MGC FC TGT NL++ EIV Q++ R IRN+V MGM
Sbjct: 98 PDEGRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQIMAVRRDVEIRNIVMMGM 157
Query: 89 GEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEPL+N ++ A+ IM G Q+S +R+TVST G+ + + +LP +NLAVSL+A
Sbjct: 158 GEPLHNLDNVIPAIHIMIDGNGLQLSNRRVTVSTCGLAPEMERLGRELPNVNLAVSLNAT 217
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
++R +IMP R +PL++L++A +E+ ++K+ EY+ML G+ND + A +L +L
Sbjct: 218 TDELRDRIMPINRRYPLKELLSACREFPLPGRRKVTFEYVMLGGLNDTLEDAKRLLRLTS 277
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLIPFN +FR+ + + +F K L + + R G DIS ACGQL
Sbjct: 278 DIPNKVNLIPFNEFQGC-EFRSPTRAAIDAFHKYLIDRH-VTVITRDSRGSDISAACGQL 335
>gi|421863302|ref|ZP_16295001.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379239|emb|CBX22196.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 364
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/256 (43%), Positives = 155/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDYGYGLSRRRVTVSTSGMVSQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDGVND+ QH
Sbjct: 215 LAVSLHASNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGVNDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
AH+L L++ NLIPFNP + S + SS + + F+ IL+ + + TVRK G
Sbjct: 275 AHELINLVKDVPCKFNLIPFNPFPN-SGYERSSKENIRVFKDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|193068396|ref|ZP_03049359.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
gi|192958348|gb|EDV88788.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
Length = 384
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|206601630|gb|EDZ38113.1| Putative radical SAM family protein [Leptospirillum sp. Group II
'5-way CG']
Length = 379
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 167/300 (55%), Gaps = 36/300 (12%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
++ +G +E+V++ D R+TLC+SSQVGC +GC FC T MG
Sbjct: 85 LELSDGALIESVLIPRDD--------------RATLCVSSQVGCGIGCRFCRTAEMGLIR 130
Query: 61 NLSSGEIVEQLVHASRL-------------------SNIRNVVFMGMGEPLNNYAALVEA 101
NLS EI+ Q+ A+RL S + ++VFMGMGEPL N+ LV +
Sbjct: 131 NLSVSEILGQVRVANRLLAESPVRDMSKETEPAPLLSRVNHLVFMGMGEPLANFDHLVRS 190
Query: 102 VRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 160
+ ++T F +S +RITVST G+ I + +NLAVSL AP +++R +MP +R
Sbjct: 191 LAVLTSPEGFGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEELRENLMPISR 250
Query: 161 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 220
P+ +++A + Y ++Q+I EY++L GVND E A +L +LL F+ VNLIPFNP
Sbjct: 251 HHPIRSILSACRAYPLRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRSKVNLIPFNP 310
Query: 221 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 280
S + D+V FQ+IL + T+R G+DI GACGQL ++ ++ +S+
Sbjct: 311 YPG-SPYHRPDKDRVRRFQEILLAK-GVTATLRTTRGEDILGACGQLALSPSPALTMESS 368
>gi|254304122|ref|ZP_04971480.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148324314|gb|EDK89564.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 358
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 156/273 (57%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++GG +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDGGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++ +S
Sbjct: 138 NLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LAVSLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAVSLHSAINEKRDKIIPINKNFPLEDLSAVLVEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK +++++ EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRVTFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|218548046|ref|YP_002381837.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ATCC 35469]
gi|422806473|ref|ZP_16854905.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253]
gi|424815430|ref|ZP_18240581.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ECD227]
gi|254807182|sp|B7LKC1.1|RLMN_ESCF3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|218355587|emb|CAQ88198.1| putative Fe-S containing enzyme [Escherichia fergusonii ATCC 35469]
gi|324113011|gb|EGC06987.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253]
gi|325496450|gb|EGC94309.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ECD227]
Length = 384
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|410031405|ref|ZP_11281235.1| ribosomal RNA large subunit methyltransferase N [Marinilabilia sp.
AK2]
Length = 353
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 145/246 (58%), Gaps = 9/246 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV----HASRLSN--IRN 82
P R T C+SSQVGC + CNFCAT + NL+ EI +Q+V A N + N
Sbjct: 100 PTEKRITACVSSQVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIKEEAETYFNRPLTN 159
Query: 83 VVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
+VFMGMGEPL NY ++EA+ +T ++P+RIT+STVGI I K D NLA
Sbjct: 160 IVFMGMGEPLLNYNNVIEAIDKITAPEGLGMAPRRITLSTVGIPKMIKKMADDEVKFNLA 219
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
+SLH+ + + R ++MP PLE L ALK + + +++K+ EY++ DGVND+E+HA
Sbjct: 220 ISLHSAINETRSRLMPINEVNPLEDLAEALKYWYQKTKRKVTYEYVIWDGVNDDEKHAKA 279
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L K + VN+I +NPI +FR +S + V + +IL I VRK GQDI
Sbjct: 280 LAKFCKIIPSKVNIIQYNPIDE-GEFRQASQEAVDMYVRILEEQ-GIIAKVRKSRGQDID 337
Query: 262 GACGQL 267
ACGQL
Sbjct: 338 AACGQL 343
>gi|417384855|ref|ZP_12150096.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353607512|gb|EHC61371.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
Length = 353
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 79 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 138
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 139 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 197
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 198 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 257
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 258 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 315
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 316 RGDDIDAACGQLAGDVIDR 334
>gi|261880280|ref|ZP_06006707.1| cfr family radical SAM enzyme [Prevotella bergensis DSM 17361]
gi|270332967|gb|EFA43753.1| cfr family radical SAM enzyme [Prevotella bergensis DSM 17361]
Length = 359
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 150/240 (62%), Gaps = 4/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P G R+TLC+S +VGCKM C FC TG GF+ LS+ +I+ Q+ ++ N+VFMG
Sbjct: 111 PDGERATLCVSCEVGCKMNCLFCQTGKQGFQGYLSAADILNQIYSLPERESLTNIVFMGQ 170
Query: 89 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEP++N ++ I+T F SPKRITVST+GI + + +F + +LAVSLH+P
Sbjct: 171 GEPMDNLDNVLRTTEILTAPYAFAWSPKRITVSTIGIKNELKRFIEE-SDCHLAVSLHSP 229
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
+ R ++MP R P+E++++ L+ Y + Q+++ EYI+ +G+ND ++HA + +LLE
Sbjct: 230 FHEQRAELMPIERTTPVEEIVDLLRNYDFSHQRRLSFEYIVFEGINDSKEHARAIVRLLE 289
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLI F+PI V+ + D ++ SF+ L ++ I TT+R GQDI ACG L
Sbjct: 290 GLFCRVNLIRFHPIPHVN-LHGADDKQMESFRNYL-TTHGIHTTIRASRGQDILAACGLL 347
>gi|432835471|ref|ZP_20069009.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE136]
gi|431384635|gb|ELG68681.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE136]
Length = 384
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|293415781|ref|ZP_06658424.1| cfr family radical SAM enzyme [Escherichia coli B185]
gi|291433429|gb|EFF06408.1| cfr family radical SAM enzyme [Escherichia coli B185]
Length = 384
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFLGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|442318307|ref|YP_007358328.1| radical SAM protein [Myxococcus stipitatus DSM 14675]
gi|441485949|gb|AGC42644.1| radical SAM protein [Myxococcus stipitatus DSM 14675]
Length = 360
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 165/291 (56%), Gaps = 31/291 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++G +E V+MR+ R+T+CIS+Q GC MGC FCATG MG
Sbjct: 88 LKLEDGQTIETVLMRFKG--------------RATVCISTQAGCAMGCVFCATGQMGLSR 133
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSP 114
+L+ GEIV Q++H R+ +RN+V MGMGEPL+NY + A+ ++ L ++P
Sbjct: 134 HLTPGEIVGQILHVRRILRESGETLRNIVLMGMGEPLHNYDNTMAAMDVLVDPLGLAMAP 193
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ IT+STVG+V I + + + LAVSLH + R ++PA R +PL +LM+A + Y
Sbjct: 194 RFITLSTVGVVPGIRRLADEDRPVQLAVSLHGATDEERAALVPAGRRWPLAELMDACRYY 253
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI----GSVSQFRTS 230
+++IF E+ +++G ND +HA+ LG LL VN+IP NP G SQ
Sbjct: 254 IARRKRRIFFEWTLIEGRNDTPEHANTLGALLTGMDAHVNVIPLNPTVGYDGGPSQ---- 309
Query: 231 SDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 281
V +FQ L ++ I +TVR++ G DI CGQL + ++ S +S P
Sbjct: 310 -PTSVRAFQDTLM-AHGIPSTVRQRRGIDIDAGCGQLKSAV-ERRSRRSLP 357
>gi|307132063|ref|YP_003884079.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
gi|306529592|gb|ADM99522.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
Length = 392
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 118 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 177
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 178 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 236
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 237 ALAISLHAPTDEIRNEIMPINKKYDIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 296
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 297 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 354
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 355 RGDDIDAACGQLAGEVVDR 373
>gi|16765845|ref|NP_461460.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|167991834|ref|ZP_02572933.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|197263041|ref|ZP_03163115.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|374981957|ref|ZP_09723279.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|378445942|ref|YP_005233574.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378451265|ref|YP_005238624.1| hypothetical protein STM14_3097 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378700426|ref|YP_005182383.1| hypothetical protein SL1344_2487 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378985084|ref|YP_005248239.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378989905|ref|YP_005253069.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
gi|379701754|ref|YP_005243482.1| radical SAM superfamily protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383497213|ref|YP_005397902.1| hypothetical protein UMN798_2724 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|417540943|ref|ZP_12192814.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|81594911|sp|Q8ZN52.1|RLMN_SALTY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|16421069|gb|AAL21419.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|197241296|gb|EDY23916.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|205329931|gb|EDZ16695.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261247721|emb|CBG25549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994643|gb|ACY89528.1| hypothetical protein STM14_3097 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159074|emb|CBW18588.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913512|dbj|BAJ37486.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321222774|gb|EFX47845.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|323130853|gb|ADX18283.1| radical SAM superfamily protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332989452|gb|AEF08435.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
gi|353661724|gb|EHD00962.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|380464034|gb|AFD59437.1| hypothetical protein UMN798_2724 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
Length = 388
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|417335554|ref|ZP_12118355.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Alachua
str. R6-377]
gi|417532885|ref|ZP_12187111.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Urbana str.
R8-2977]
gi|353571081|gb|EHC35147.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Alachua
str. R6-377]
gi|353661789|gb|EHD00996.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Urbana str.
R8-2977]
Length = 354
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 80 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 139
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 140 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 198
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 199 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 258
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 259 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 316
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 317 RGDDIDAACGQLAGDVIDR 335
>gi|407803612|ref|ZP_11150446.1| Fe-S-cluster redox protein [Alcanivorax sp. W11-5]
gi|407022456|gb|EKE34209.1| Fe-S-cluster redox protein [Alcanivorax sp. W11-5]
Length = 382
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/260 (43%), Positives = 158/260 (60%), Gaps = 17/260 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR------- 81
P G R TLC+SSQVGC + C+FC+TG GF+ +LSS EI+ Q+ AS+ R
Sbjct: 100 PDGRRGTLCVSSQVGCSVDCSFCSTGKQGFQRDLSSAEIIGQVWLASKTFGPRRNLGEHP 159
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL NY +V A+RIM L + +S +RIT+ST G+V I++ DL +
Sbjct: 160 VTNVVMMGMGEPLLNYDNVVRAMRIMKDDLGYGISKRRITLSTSGVVPMIDRLSQDL-DV 218
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ---KNSQQKIFIEYIMLDGVNDE 195
+LA+SLHAP +R ++P R +PLE+L+ A + Y ++ + I +EY++L G+ND+
Sbjct: 219 SLAISLHAPNDALRDVLVPLNRKYPLEELLAACQRYSDGVEHRHKSITMEYVLLKGINDQ 278
Query: 196 EQHAHQLGKLLET-FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 254
+HA QL KLL + +NLIPFNP R + D V +F K L + TT+R
Sbjct: 279 PEHARQLVKLLRNRMPIKLNLIPFNPFPHSGYERPAKPD-VLAFHKYL-NENGLMTTIRT 336
Query: 255 QMGQDISGACGQLVVNLPDK 274
G DI ACGQLV + D+
Sbjct: 337 TRGDDIDAACGQLVGEVMDR 356
>gi|422031852|ref|ZP_16377997.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm2]
gi|427552549|ref|ZP_18928490.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm8]
gi|427569106|ref|ZP_18933208.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm9]
gi|427589368|ref|ZP_18938001.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm3]
gi|427612789|ref|ZP_18942863.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm4]
gi|427637095|ref|ZP_18947765.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm6]
gi|427656844|ref|ZP_18952524.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm10]
gi|427662098|ref|ZP_18957436.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm11]
gi|427672719|ref|ZP_18962252.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm12]
gi|414017601|gb|EKT01308.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm8]
gi|414018305|gb|EKT01968.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm2]
gi|414031052|gb|EKT14130.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm9]
gi|414032534|gb|EKT15537.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm3]
gi|414035751|gb|EKT18608.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm4]
gi|414045819|gb|EKT28186.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm10]
gi|414046455|gb|EKT28782.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm6]
gi|414051403|gb|EKT33506.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm11]
gi|414058564|gb|EKT40224.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm12]
Length = 388
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|438030924|ref|ZP_20855304.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. 50-5646]
gi|435327567|gb|ELO99234.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. 50-5646]
Length = 371
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 97 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 156
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 157 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 215
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 216 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 275
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 276 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 333
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 334 RGDDIDAACGQLAGDVIDR 352
>gi|395235042|ref|ZP_10413262.1| ribosomal RNA large subunit methyltransferase N [Enterobacter sp.
Ag1]
gi|394730327|gb|EJF30185.1| ribosomal RNA large subunit methyltransferase N [Enterobacter sp.
Ag1]
Length = 387
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 113 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKKTGVRP 172
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 173 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 231
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R +IMP + + +E + A++ Y + S Q ++ +EY++LD VND
Sbjct: 232 ALAISLHAPTDDIRDEIMPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVLLDHVNDG 291
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 292 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 349
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 350 RGDDIDAACGQLAGEVIDR 368
>gi|417351020|ref|ZP_12128956.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|418512885|ref|ZP_13079121.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pomona str. ATCC 10729]
gi|353569453|gb|EHC34017.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|366083097|gb|EHN47025.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pomona str. ATCC 10729]
Length = 388
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|297621155|ref|YP_003709292.1| Radical SAM superfamily protein [Waddlia chondrophila WSU 86-1044]
gi|297376456|gb|ADI38286.1| Radical SAM superfamily protein [Waddlia chondrophila WSU 86-1044]
gi|337293379|emb|CCB91368.1| Ribosomal RNA large subunit methyltransferase N [Waddlia
chondrophila 2032/99]
Length = 362
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/252 (42%), Positives = 154/252 (61%), Gaps = 7/252 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---IRNVVF 85
P R TLCISSQVGC++GC FC TG +G + NL+SGEI+ Q++ A++ N I N+VF
Sbjct: 95 PYESRITLCISSQVGCRIGCTFCQTGKLGLQRNLTSGEILSQILLANQSMNGKKITNIVF 154
Query: 86 MGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
MGMGEPL+NY +++A R+M +S R+TVST G+V I K DLP + LA+SL
Sbjct: 155 MGMGEPLDNYDEVLKACRLMVDPKAIGLSMHRVTVSTSGLVPYIEKLGQDLP-VRLAISL 213
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
H + R ++MP R +PL +L AL++Y + I EY+M++G ND + A +L K
Sbjct: 214 HQADDEKRSRMMPVNRRYPLSELKKALQQYPAPKRYGITFEYVMIEGENDRIEDAKKLVK 273
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
+ + VNLIP N + + + S+ D++ SFQ L +I VR GQDISG C
Sbjct: 274 FVSGLKAKVNLIPINHFPGL-EMKASAADRLKSFQSYL-AERSIPAPVRYSRGQDISGGC 331
Query: 265 GQLVVNLPDKIS 276
GQL ++++
Sbjct: 332 GQLAAKTQEELN 343
>gi|197249479|ref|YP_002147478.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|440765905|ref|ZP_20944916.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH11G1113]
gi|440766943|ref|ZP_20945929.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH08SF124]
gi|440773642|ref|ZP_20952535.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH10GFN094]
gi|254807201|sp|B5F1A0.1|RLMN_SALA4 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|197213182|gb|ACH50579.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|436411112|gb|ELP09066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH11G1113]
gi|436415369|gb|ELP13289.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH10GFN094]
gi|436421442|gb|ELP19287.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH08SF124]
Length = 388
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|71892305|ref|YP_278039.1| pyruvate formate lyase activating enzyme 2 [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|123761466|sp|Q492D9.1|RLMN_BLOPB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71796411|gb|AAZ41162.1| putative pyruvate formate lyase activating enzyme 2 [Candidatus
Blochmannia pennsylvanicus str. BPEN]
Length = 373
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/267 (40%), Positives = 162/267 (60%), Gaps = 24/267 (8%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQ+GC +GC+FC T GF NL+ EI+ Q+ A++L N
Sbjct: 106 PENKRTTLCVSSQIGCPLGCSFCGTAQQGFNRNLNVSEIIGQVWRAAQLINLNKKIKIKN 165
Query: 80 ----IRNVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHS- 133
I N+VFMGMGEPL N +V A+R I+ F++S + IT+ST GIV I K +
Sbjct: 166 NRFPITNIVFMGMGEPLLNIVNVVSAIRIILDDFGFKLSKRHITLSTAGIVPGIEKLKNM 225
Query: 134 -DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ---KNSQQKIFIEYIML 189
D+P LA+SLHAP +R +IMP + + + ++ A + Y K++ +I IEY++L
Sbjct: 226 IDIP---LAISLHAPNDIIRNKIMPINKKYNINSVLEAARRYSMDTKSNHGRITIEYVLL 282
Query: 190 DGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 249
+ND+ HAHQL K L+ +NLIP+NPI ++ ++ SS ++ +F K+L YNI
Sbjct: 283 KNINDDVLHAHQLAKQLQGIPCKINLIPWNPIPNI-RYACSSQIRMRAFLKVLL-KYNIV 340
Query: 250 TTVRKQMGQDISGACGQLVVNLPDKIS 276
T +RK G DI+ ACGQL + ++I+
Sbjct: 341 TIIRKIRGADINAACGQLTGEVINRIN 367
>gi|260889579|ref|ZP_05900842.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254]
gi|260860990|gb|EEX75490.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254]
Length = 365
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 151/241 (62%), Gaps = 8/241 (3%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSNIRNVVFMG 87
R TLC+SSQ+GC +GC+FCAT TM ++ NLS EI+ Q + R + NVV+MG
Sbjct: 115 RHTLCVSSQIGCLIGCDFCATATMTYERNLSISEILLQYYYVQKHLLQRGEKLGNVVYMG 174
Query: 88 MGEPLNNYAALVEAVRIMTGLPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
MGEP NY A++ ++ ++ Q KR T+ST GIV+ I +F + +NLA+SLH+
Sbjct: 175 MGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRFTENENQINLAISLHS 234
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
DVR +IMP + + +++L +L EYQK ++ +I EYI++D +N E + A +L L
Sbjct: 235 VKDDVRSEIMPINKRWGVKQLKESLLEYQKQTKNRITFEYILIDDLNCEPEDARELAGFL 294
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
+F +VNLIP+NP+G ++ S K F K+L+ N+ T+R+ GQDI+ ACGQ
Sbjct: 295 NSFSCLVNLIPYNPVGG-KPYKRPSKQKQREFYKLLKDK-NVNVTLRETKGQDIAAACGQ 352
Query: 267 L 267
L
Sbjct: 353 L 353
>gi|238020955|ref|ZP_04601381.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
gi|237867935|gb|EEP68941.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
Length = 366
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 159/261 (60%), Gaps = 13/261 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKALGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ NY ++ A+ IM + +S +R+TVST G+V +++ D+P +
Sbjct: 156 SNVVMMGMGEPMANYDNVITALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKDDMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA VR +I+P + +PL++LM A Y K + I EY+MLDG+ND+ +H
Sbjct: 215 LAVSLHASNDKVRDEIVPLNKKYPLKELMAACNRYLAKAPRDFITFEYVMLDGINDKPEH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + SS+ ++ F++IL + ++ TTVRK G
Sbjct: 275 ARELVQLVKDTPCKFNLIPFNPFPN-SGYERSSNKNINIFKEILMEA-DLVTTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDKISAKS 279
DI ACGQL + DK ++
Sbjct: 333 DIDAACGQLAGQVQDKTKRQA 353
>gi|257125946|ref|YP_003164060.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b]
gi|257049885|gb|ACV39069.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b]
Length = 372
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 152/241 (63%), Gaps = 8/241 (3%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSNIRNVVFMG 87
R TLC+SSQ+GC +GC+FCAT TM ++ NLS EI+ Q + R + NVV+MG
Sbjct: 121 RHTLCVSSQIGCLIGCDFCATATMTYERNLSISEILLQYYYVQKHLLQRGEKLGNVVYMG 180
Query: 88 MGEPLNNYAALVEAVRIMTGLPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
MGEP NY A++ ++ ++ Q KR T+ST GIV+ I +F + +NLA+SLH+
Sbjct: 181 MGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRFTENENQINLAISLHS 240
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
DVR +IMP + + +++L +L EYQK ++ +I EYI+++ +N E + A +L L
Sbjct: 241 VKDDVRNEIMPINKRWGVKQLKESLLEYQKQTKNRITFEYILINDLNCEPEDARELAGFL 300
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
+F +VNLIP+NP+G ++T S K F K+L+ N+ T+R+ GQDI+ ACGQ
Sbjct: 301 NSFSCLVNLIPYNPVGG-KPYKTPSKQKQREFYKLLKDK-NVNVTLRETKGQDIAAACGQ 358
Query: 267 L 267
L
Sbjct: 359 L 359
>gi|301632243|ref|XP_002945200.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
[Xenopus (Silurana) tropicalis]
Length = 328
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/265 (44%), Positives = 154/265 (58%), Gaps = 19/265 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN---- 79
P R TLC+SSQ GC +GC FC+TG GF NLS+GEI+ QL +A RL +
Sbjct: 52 PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHHLRQRLGSSERV 111
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NYAALV A+R+M + +S +R+TVST G+V + + D P +
Sbjct: 112 ISNVVMMGMGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMERLALDCP-V 170
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++ R +PLE+L+ Y ++ + I EY MLDGVND+ +
Sbjct: 171 ALAVSLHAPNDALRDHLVSLNRKYPLEELLQTCVRYLDHAPRDFITFEYCMLDGVNDQPE 230
Query: 198 HAHQLGKLLE-----TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL +L+ NLIPFNP R S +VS F ++L + I TTV
Sbjct: 231 HAQQLIQLVRGHAQGKVWCKFNLIPFNPFPESGLVR-SPPQRVSGFARLLSDA-GIVTTV 288
Query: 253 RKQMGQDISGACGQLVVNLPDKISA 277
RK G DI ACGQL + D+ A
Sbjct: 289 RKTRGDDIDAACGQLAGEVKDRTRA 313
>gi|213580692|ref|ZP_03362518.1| hypothetical protein SentesTyph_05537 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 386
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|16761440|ref|NP_457057.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. CT18]
gi|29140863|ref|NP_804205.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|56412596|ref|YP_149671.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|62181092|ref|YP_217509.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161612716|ref|YP_001586681.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi B str. SPB7]
gi|167549454|ref|ZP_02343213.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|168232093|ref|ZP_02657151.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168238262|ref|ZP_02663320.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168243305|ref|ZP_02668237.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168261436|ref|ZP_02683409.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168466724|ref|ZP_02700578.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168821500|ref|ZP_02833500.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194444721|ref|YP_002041783.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194448097|ref|YP_002046583.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194469426|ref|ZP_03075410.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194738017|ref|YP_002115587.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197361531|ref|YP_002141167.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|198245006|ref|YP_002216589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|200388216|ref|ZP_03214828.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204929473|ref|ZP_03220547.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205353624|ref|YP_002227425.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|207857933|ref|YP_002244584.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|213161946|ref|ZP_03347656.1| hypothetical protein Salmoneentericaenterica_18887 [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213425329|ref|ZP_03358079.1| hypothetical protein SentesTyphi_06363 [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213649661|ref|ZP_03379714.1| hypothetical protein SentesTy_21620 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213857325|ref|ZP_03384296.1| hypothetical protein SentesT_19305 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|224582938|ref|YP_002636736.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|289825424|ref|ZP_06544661.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|375002364|ref|ZP_09726704.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|375115433|ref|ZP_09760603.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SCSA50]
gi|375120078|ref|ZP_09765245.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|375124474|ref|ZP_09769638.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|378954139|ref|YP_005211626.1| hypothetical protein SPUL_0353 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|378958479|ref|YP_005215965.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|386592330|ref|YP_006088730.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|409251192|ref|YP_006886994.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503
methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|416426049|ref|ZP_11692668.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|416431782|ref|ZP_11695884.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|416438159|ref|ZP_11699368.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|416443974|ref|ZP_11703374.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|416450747|ref|ZP_11707773.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|416460671|ref|ZP_11714931.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|416471027|ref|ZP_11719080.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|416481236|ref|ZP_11723220.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|416493203|ref|ZP_11727876.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|416498355|ref|ZP_11730204.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|416506705|ref|ZP_11734847.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB31]
gi|416514798|ref|ZP_11738361.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. ATCC
BAA710]
gi|416530920|ref|ZP_11745334.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. LQC 10]
gi|416539116|ref|ZP_11749825.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB30]
gi|416546116|ref|ZP_11753671.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|416552143|ref|ZP_11756872.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 29N]
gi|416560905|ref|ZP_11761460.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 42N]
gi|416571191|ref|ZP_11766523.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 4441 H]
gi|416577256|ref|ZP_11769642.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|416583531|ref|ZP_11773344.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|416591355|ref|ZP_11778359.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|416599607|ref|ZP_11783766.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|416603734|ref|ZP_11785595.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|416613829|ref|ZP_11792280.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|416620343|ref|ZP_11795682.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|416628617|ref|ZP_11799739.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|416637684|ref|ZP_11803589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|416648943|ref|ZP_11809479.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|416662072|ref|ZP_11815732.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|416666825|ref|ZP_11817795.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|416677344|ref|ZP_11822238.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|416697135|ref|ZP_11828110.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|416707776|ref|ZP_11832816.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|416711416|ref|ZP_11835196.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|416720590|ref|ZP_11842224.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|416722275|ref|ZP_11843268.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|416730102|ref|ZP_11848461.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|416738011|ref|ZP_11853109.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|416750297|ref|ZP_11859691.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|416755652|ref|ZP_11862196.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|416762658|ref|ZP_11866596.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|416770818|ref|ZP_11872148.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|417328050|ref|ZP_12113296.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Adelaide str. A4-669]
gi|417342964|ref|ZP_12123639.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Baildon str. R6-199]
gi|417359948|ref|ZP_12134190.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|417423420|ref|ZP_12160259.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Mississippi str.
A4-633]
gi|417469081|ref|ZP_12165516.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
gi|417512615|ref|ZP_12176894.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str.
A4-543]
gi|417519799|ref|ZP_12181855.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
gi|418482578|ref|ZP_13051593.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
80959-06]
gi|418490208|ref|ZP_13056758.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035278]
gi|418493543|ref|ZP_13060007.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035318]
gi|418498467|ref|ZP_13064882.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035320]
gi|418504940|ref|ZP_13071292.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035321]
gi|418506586|ref|ZP_13072916.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035327]
gi|418525948|ref|ZP_13091927.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008286]
gi|418762279|ref|ZP_13318409.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35185]
gi|418766898|ref|ZP_13322969.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35199]
gi|418770295|ref|ZP_13326317.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21539]
gi|418775717|ref|ZP_13331669.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 33953]
gi|418781348|ref|ZP_13337232.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35188]
gi|418782848|ref|ZP_13338703.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21559]
gi|418790860|ref|ZP_13346629.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19447]
gi|418792015|ref|ZP_13347764.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19449]
gi|418799204|ref|ZP_13354872.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19567]
gi|418800818|ref|ZP_13356465.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35202]
gi|418805483|ref|ZP_13361071.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21550]
gi|418814210|ref|ZP_13369730.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22513]
gi|418818907|ref|ZP_13374371.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21538]
gi|418819222|ref|ZP_13374675.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22425]
gi|418830875|ref|ZP_13385834.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM
N18486]
gi|418837560|ref|ZP_13392433.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM N1543]
gi|418841940|ref|ZP_13396754.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21554]
gi|418843034|ref|ZP_13397838.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19443]
gi|418850326|ref|ZP_13405043.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 37978]
gi|418855649|ref|ZP_13410302.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19593]
gi|418859511|ref|ZP_13414114.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19470]
gi|418861742|ref|ZP_13416294.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19536]
gi|418867652|ref|ZP_13422106.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 4176]
gi|419729187|ref|ZP_14256147.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41579]
gi|419735242|ref|ZP_14262125.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41563]
gi|419737762|ref|ZP_14264533.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41573]
gi|419742615|ref|ZP_14269287.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41566]
gi|419751225|ref|ZP_14277649.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41565]
gi|419787826|ref|ZP_14313531.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 1]
gi|419795431|ref|ZP_14321030.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 15]
gi|421357046|ref|ZP_15807359.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
622731-39]
gi|421361384|ref|ZP_15811648.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639016-6]
gi|421367137|ref|ZP_15817338.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
640631]
gi|421372683|ref|ZP_15822831.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-0424]
gi|421375739|ref|ZP_15825851.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-6]
gi|421381055|ref|ZP_15831111.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
485549-17]
gi|421383737|ref|ZP_15833768.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-22]
gi|421388652|ref|ZP_15838640.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-70]
gi|421396299|ref|ZP_15846230.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-26]
gi|421401580|ref|ZP_15851455.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-37]
gi|421402018|ref|ZP_15851882.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-46]
gi|421408915|ref|ZP_15858712.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-50]
gi|421413709|ref|ZP_15863461.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-1427]
gi|421415483|ref|ZP_15865209.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-2659]
gi|421423620|ref|ZP_15873275.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
78-1757]
gi|421424832|ref|ZP_15874470.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
22510-1]
gi|421429350|ref|ZP_15878947.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 8b-1]
gi|421437194|ref|ZP_15886716.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648905
5-18]
gi|421437850|ref|ZP_15887360.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
6-18]
gi|421446290|ref|ZP_15895706.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
50-3079]
gi|421449716|ref|ZP_15899098.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
58-6482]
gi|421568827|ref|ZP_16014538.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00322]
gi|421576406|ref|ZP_16022005.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00325]
gi|421581147|ref|ZP_16026694.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00326]
gi|421584179|ref|ZP_16029688.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00328]
gi|421884943|ref|ZP_16316147.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str. SS209]
gi|436622893|ref|ZP_20514792.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22704]
gi|436778287|ref|ZP_20521095.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE30663]
gi|436802866|ref|ZP_20525565.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS44]
gi|436811044|ref|ZP_20530040.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1882]
gi|436817145|ref|ZP_20534227.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1884]
gi|436845491|ref|ZP_20538818.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1594]
gi|436853356|ref|ZP_20543316.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1566]
gi|436859555|ref|ZP_20547468.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1580]
gi|436863726|ref|ZP_20550021.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1543]
gi|436868438|ref|ZP_20553198.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1441]
gi|436882806|ref|ZP_20561431.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1810]
gi|436887164|ref|ZP_20563564.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1558]
gi|436898919|ref|ZP_20570554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1018]
gi|436901142|ref|ZP_20572066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1010]
gi|436909403|ref|ZP_20576127.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1729]
gi|436921338|ref|ZP_20583741.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0895]
gi|436930031|ref|ZP_20588542.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0899]
gi|436938075|ref|ZP_20592987.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1457]
gi|436945340|ref|ZP_20597494.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1747]
gi|436949504|ref|ZP_20599485.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0968]
gi|436960762|ref|ZP_20604399.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1444]
gi|436974665|ref|ZP_20611164.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1445]
gi|436983928|ref|ZP_20614248.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1559]
gi|436991132|ref|ZP_20617311.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1565]
gi|437007433|ref|ZP_20623286.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1808]
gi|437016658|ref|ZP_20626074.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1811]
gi|437033326|ref|ZP_20632520.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0956]
gi|437037918|ref|ZP_20634328.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1455]
gi|437049624|ref|ZP_20640216.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1575]
gi|437054922|ref|ZP_20643222.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1725]
gi|437066405|ref|ZP_20649483.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1745]
gi|437072824|ref|ZP_20652666.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1791]
gi|437080646|ref|ZP_20657196.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1795]
gi|437088891|ref|ZP_20661796.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
576709]
gi|437111632|ref|ZP_20668219.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
635290-58]
gi|437118552|ref|ZP_20670386.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-16]
gi|437133447|ref|ZP_20678420.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-19]
gi|437139489|ref|ZP_20681822.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-2]
gi|437143581|ref|ZP_20684405.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-9]
gi|437149983|ref|ZP_20688493.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629163]
gi|437160241|ref|ZP_20694517.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE15-1]
gi|437172216|ref|ZP_20701014.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_N202]
gi|437180343|ref|ZP_20706066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_56-3991]
gi|437185725|ref|ZP_20709146.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_76-3618]
gi|437206828|ref|ZP_20712554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
13183-1]
gi|437262189|ref|ZP_20718909.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_81-2490]
gi|437270377|ref|ZP_20723173.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL909]
gi|437275158|ref|ZP_20725704.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL913]
gi|437284176|ref|ZP_20729429.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_69-4941]
gi|437315446|ref|ZP_20737135.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
638970-15]
gi|437330767|ref|ZP_20741794.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 17927]
gi|437336094|ref|ZP_20742916.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS4]
gi|437377383|ref|ZP_20750038.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22558]
gi|437420458|ref|ZP_20754632.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
22-17]
gi|437439230|ref|ZP_20757170.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
40-18]
gi|437461323|ref|ZP_20762272.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
1-1]
gi|437472192|ref|ZP_20765427.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
4-1]
gi|437489918|ref|ZP_20770700.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642046
4-7]
gi|437510806|ref|ZP_20776884.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648898
4-5]
gi|437524989|ref|ZP_20779556.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648899
3-17]
gi|437549561|ref|ZP_20783360.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648900
1-16]
gi|437576688|ref|ZP_20790759.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
1-17]
gi|437593491|ref|ZP_20795424.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
39-2]
gi|437606102|ref|ZP_20799636.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648902
6-8]
gi|437613324|ref|ZP_20801508.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648903
1-6]
gi|437627613|ref|ZP_20805896.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648904
3-6]
gi|437662560|ref|ZP_20813525.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 653049
13-19]
gi|437676523|ref|ZP_20816984.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
8-1]
gi|437695092|ref|ZP_20822062.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
9-7]
gi|437713633|ref|ZP_20827513.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
42-20]
gi|437721442|ref|ZP_20829060.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
16-16]
gi|437793254|ref|ZP_20837334.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
76-2651]
gi|437814539|ref|ZP_20842361.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 33944]
gi|437869053|ref|ZP_20848292.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
6.0562-1]
gi|438100713|ref|ZP_20863980.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
62-1976]
gi|438109166|ref|ZP_20867229.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
53-407]
gi|438131978|ref|ZP_20873745.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pullorum str. ATCC
9120]
gi|445130531|ref|ZP_21381340.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9184]
gi|445140334|ref|ZP_21384892.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. SL1438]
gi|445150596|ref|ZP_21389812.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. HWS51]
gi|445173607|ref|ZP_21396748.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE8a]
gi|445191693|ref|ZP_21399867.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 20037]
gi|445232237|ref|ZP_21406008.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE10]
gi|445275224|ref|ZP_21410560.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
gi|445334903|ref|ZP_21415283.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 18569]
gi|445344447|ref|ZP_21417623.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 13-1]
gi|445361962|ref|ZP_21424025.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. PT23]
gi|75481689|sp|Q57LI4.1|RLMN_SALCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|81362045|sp|Q5PNI4.1|RLMN_SALPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|81628152|sp|Q8Z4P2.1|RLMN_SALTI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829875|sp|A9N1Z8.1|RLMN_SALPB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807202|sp|B5FR66.1|RLMN_SALDC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807203|sp|B5R584.1|RLMN_SALEP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807204|sp|B5RCZ4.1|RLMN_SALG2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807205|sp|B4TD95.1|RLMN_SALHS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807206|sp|B4T0Q1.1|RLMN_SALNS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807207|sp|C0PYM8.1|RLMN_SALPC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807208|sp|B5BAY3.1|RLMN_SALPK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807209|sp|B4TR97.1|RLMN_SALSV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|25320182|pir||AD0822 conserved hypothetical protein STY2770 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503740|emb|CAD02728.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136488|gb|AAO68054.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56126853|gb|AAV76359.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62128725|gb|AAX66428.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161362080|gb|ABX65848.1| hypothetical protein SPAB_00414 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403384|gb|ACF63606.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194406401|gb|ACF66620.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194455790|gb|EDX44629.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194713519|gb|ACF92740.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195630780|gb|EDX49372.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197093007|emb|CAR58440.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197288805|gb|EDY28178.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197939522|gb|ACH76855.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199605314|gb|EDZ03859.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204321192|gb|EDZ06392.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205273405|emb|CAR38380.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205325472|gb|EDZ13311.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205333531|gb|EDZ20295.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205337567|gb|EDZ24331.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205342014|gb|EDZ28778.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205349318|gb|EDZ35949.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206709736|emb|CAR34088.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224467465|gb|ACN45295.1| hypothetical protein SPC_1129 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|320087020|emb|CBY96789.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503
methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322613730|gb|EFY10669.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322619527|gb|EFY16403.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322625032|gb|EFY21861.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322629525|gb|EFY26301.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322634044|gb|EFY30781.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322635518|gb|EFY32229.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322639806|gb|EFY36485.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322644428|gb|EFY40969.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648573|gb|EFY45022.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322655207|gb|EFY51516.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658254|gb|EFY54520.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322664255|gb|EFY60452.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322669422|gb|EFY65571.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322673149|gb|EFY69255.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322676541|gb|EFY72609.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322683291|gb|EFY79305.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322685823|gb|EFY81816.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|322715579|gb|EFZ07150.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SCSA50]
gi|323194766|gb|EFZ79954.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323199546|gb|EFZ84637.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323204679|gb|EFZ89677.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323210149|gb|EFZ95050.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323217017|gb|EGA01739.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323221815|gb|EGA06219.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323225006|gb|EGA09261.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323229295|gb|EGA13419.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323235390|gb|EGA19474.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323237424|gb|EGA21487.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323245178|gb|EGA29179.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323248881|gb|EGA32807.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323253168|gb|EGA37000.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323255402|gb|EGA39170.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323262039|gb|EGA45604.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323266350|gb|EGA49838.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323269819|gb|EGA53269.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|326624345|gb|EGE30690.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|326628724|gb|EGE35067.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|353077052|gb|EHB42812.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|353568964|gb|EHC33697.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Adelaide str. A4-669]
gi|353588033|gb|EHC47184.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|353618239|gb|EHC68978.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Mississippi str.
A4-633]
gi|353628473|gb|EHC76519.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
gi|353639317|gb|EHC84626.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str.
A4-543]
gi|353645696|gb|EHC89327.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
gi|357204750|gb|AET52796.1| hypothetical protein SPUL_0353 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|357955978|gb|EHJ81597.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Baildon str. R6-199]
gi|363549922|gb|EHL34253.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. LQC 10]
gi|363554248|gb|EHL38484.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB31]
gi|363560874|gb|EHL45005.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB30]
gi|363564855|gb|EHL48895.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. ATCC
BAA710]
gi|363565051|gb|EHL49089.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 29N]
gi|363574248|gb|EHL58117.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 4441 H]
gi|363574434|gb|EHL58302.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 42N]
gi|366063051|gb|EHN27272.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
80959-06]
gi|366064121|gb|EHN28325.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035318]
gi|366066554|gb|EHN30716.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035278]
gi|366069326|gb|EHN33450.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035321]
gi|366074244|gb|EHN38308.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035320]
gi|366082645|gb|EHN46576.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035327]
gi|366829122|gb|EHN56000.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|372205935|gb|EHP19440.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008286]
gi|374352351|gb|AEZ44112.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|379985477|emb|CCF88420.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str. SS209]
gi|381295393|gb|EIC36507.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41563]
gi|381297517|gb|EIC38607.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41579]
gi|381303927|gb|EIC44938.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41573]
gi|381304428|gb|EIC45412.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41565]
gi|381313544|gb|EIC54326.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41566]
gi|383799374|gb|AFH46456.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|392612865|gb|EIW95332.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 15]
gi|392618905|gb|EIX01293.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 1]
gi|392736208|gb|EIZ93374.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35199]
gi|392737459|gb|EIZ94619.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35185]
gi|392737485|gb|EIZ94643.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21539]
gi|392747279|gb|EJA04278.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 33953]
gi|392747593|gb|EJA04589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35188]
gi|392756896|gb|EJA13790.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19447]
gi|392758392|gb|EJA15259.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21559]
gi|392764392|gb|EJA21192.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19567]
gi|392769147|gb|EJA25891.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19449]
gi|392772544|gb|EJA29245.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22513]
gi|392783226|gb|EJA39855.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35202]
gi|392784526|gb|EJA41124.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21538]
gi|392785184|gb|EJA41765.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21550]
gi|392795144|gb|EJA51525.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22425]
gi|392798457|gb|EJA54730.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM N1543]
gi|392800572|gb|EJA56806.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM
N18486]
gi|392807690|gb|EJA63758.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21554]
gi|392817806|gb|EJA73708.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19443]
gi|392818939|gb|EJA74818.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 37978]
gi|392820968|gb|EJA76801.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19593]
gi|392830062|gb|EJA85720.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19470]
gi|392837967|gb|EJA93534.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19536]
gi|392839041|gb|EJA94586.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 4176]
gi|395988769|gb|EJH97915.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
640631]
gi|395992348|gb|EJI01466.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
622731-39]
gi|395993387|gb|EJI02482.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639016-6]
gi|395999599|gb|EJI08617.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-0424]
gi|396002149|gb|EJI11154.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
485549-17]
gi|396004654|gb|EJI13636.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-6]
gi|396009908|gb|EJI18823.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-26]
gi|396019635|gb|EJI28487.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-70]
gi|396020974|gb|EJI29807.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-22]
gi|396021108|gb|EJI29939.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-37]
gi|396026474|gb|EJI35241.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-50]
gi|396033294|gb|EJI42004.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-46]
gi|396036341|gb|EJI45002.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
78-1757]
gi|396038850|gb|EJI47484.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-1427]
gi|396047720|gb|EJI56291.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-2659]
gi|396050619|gb|EJI59142.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648905
5-18]
gi|396058914|gb|EJI67373.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 8b-1]
gi|396059007|gb|EJI67465.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
22510-1]
gi|396063219|gb|EJI71620.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
50-3079]
gi|396069224|gb|EJI77564.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
58-6482]
gi|396075023|gb|EJI83300.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
6-18]
gi|402518296|gb|EJW25681.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00326]
gi|402518748|gb|EJW26120.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00325]
gi|402529211|gb|EJW36450.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00322]
gi|402531242|gb|EJW38454.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00328]
gi|434941375|gb|ELL47826.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pullorum str. ATCC
9120]
gi|434956970|gb|ELL50652.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS44]
gi|434960396|gb|ELL53778.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE30663]
gi|434963652|gb|ELL56733.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22704]
gi|434964575|gb|ELL57573.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1882]
gi|434971594|gb|ELL64097.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1884]
gi|434978460|gb|ELL70493.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1594]
gi|434984085|gb|ELL75846.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1566]
gi|434987715|gb|ELL79347.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1580]
gi|434997209|gb|ELL88474.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1543]
gi|435003008|gb|ELL94047.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1810]
gi|435004120|gb|ELL95113.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1441]
gi|435011067|gb|ELM01804.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1558]
gi|435013335|gb|ELM03989.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1018]
gi|435021723|gb|ELM12091.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1010]
gi|435025432|gb|ELM15580.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0895]
gi|435028827|gb|ELM18887.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1729]
gi|435032855|gb|ELM22778.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0899]
gi|435034526|gb|ELM24395.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1457]
gi|435036118|gb|ELM25940.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1747]
gi|435052573|gb|ELM42064.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1444]
gi|435052668|gb|ELM42156.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1445]
gi|435053258|gb|ELM42711.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0968]
gi|435064571|gb|ELM53698.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1559]
gi|435068655|gb|ELM57666.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1808]
gi|435068842|gb|ELM57852.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1565]
gi|435077340|gb|ELM66095.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0956]
gi|435082640|gb|ELM71252.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1811]
gi|435087918|gb|ELM76391.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1455]
gi|435096068|gb|ELM84342.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1575]
gi|435098301|gb|ELM86544.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1745]
gi|435099270|gb|ELM87481.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1725]
gi|435109508|gb|ELM97455.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1791]
gi|435112300|gb|ELN00169.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1795]
gi|435116314|gb|ELN04060.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
576709]
gi|435118041|gb|ELN05722.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
635290-58]
gi|435120677|gb|ELN08242.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-19]
gi|435131377|gb|ELN18590.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-2]
gi|435132088|gb|ELN19289.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-16]
gi|435139666|gb|ELN26649.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-9]
gi|435145216|gb|ELN32040.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_N202]
gi|435147167|gb|ELN33946.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629163]
gi|435147658|gb|ELN34415.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE15-1]
gi|435149135|gb|ELN35848.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_56-3991]
gi|435159276|gb|ELN45628.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_76-3618]
gi|435162114|gb|ELN48310.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_81-2490]
gi|435171108|gb|ELN56751.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL909]
gi|435175081|gb|ELN60509.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL913]
gi|435180911|gb|ELN66011.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
638970-15]
gi|435186163|gb|ELN71012.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_69-4941]
gi|435189377|gb|ELN74011.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 17927]
gi|435197810|gb|ELN82066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS4]
gi|435201136|gb|ELN85068.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
22-17]
gi|435204110|gb|ELN87822.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22558]
gi|435206317|gb|ELN89856.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
13183-1]
gi|435212624|gb|ELN95593.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
40-18]
gi|435220381|gb|ELO02678.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
1-1]
gi|435226424|gb|ELO08002.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
4-1]
gi|435231128|gb|ELO12386.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642046
4-7]
gi|435231948|gb|ELO13093.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648898
4-5]
gi|435243381|gb|ELO23647.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
1-17]
gi|435246744|gb|ELO26734.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648900
1-16]
gi|435248690|gb|ELO28546.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648899
3-17]
gi|435251805|gb|ELO31403.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
39-2]
gi|435256371|gb|ELO35680.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648902
6-8]
gi|435264579|gb|ELO43491.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648903
1-6]
gi|435267471|gb|ELO46169.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 653049
13-19]
gi|435276260|gb|ELO54272.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
8-1]
gi|435278045|gb|ELO55921.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
9-7]
gi|435285837|gb|ELO63199.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648904
3-6]
gi|435286577|gb|ELO63830.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
42-20]
gi|435293060|gb|ELO69790.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
76-2651]
gi|435294461|gb|ELO71094.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
16-16]
gi|435295604|gb|ELO72053.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 33944]
gi|435324984|gb|ELO96877.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
62-1976]
gi|435332743|gb|ELP03646.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
53-407]
gi|435335282|gb|ELP05555.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
6.0562-1]
gi|444851732|gb|ELX76818.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9184]
gi|444852360|gb|ELX77440.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. SL1438]
gi|444856755|gb|ELX81779.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. HWS51]
gi|444859847|gb|ELX84783.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE8a]
gi|444862587|gb|ELX87435.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE10]
gi|444867881|gb|ELX92554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 20037]
gi|444874995|gb|ELX99227.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 18569]
gi|444880208|gb|ELY04288.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 13-1]
gi|444884408|gb|ELY08241.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. PT23]
gi|444887710|gb|ELY11400.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
Length = 388
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|386361418|ref|YP_006059663.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Thermus thermophilus JL-18]
gi|383510445|gb|AFH39877.1| 23S rRNA m2A2503 methyltransferase [Thermus thermophilus JL-18]
Length = 355
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/283 (37%), Positives = 160/283 (56%), Gaps = 22/283 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G EAV M Y++ R T+C+S+ VGC GC FCATG +GF NL++
Sbjct: 84 DGKKTEAVYMPYEN--------------RKTVCLSTMVGCPAGCTFCATGALGFGRNLTA 129
Query: 65 GEIVEQLV---HASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRIT 118
EI++QL+ + LS IRNVV MGMGEPL N +++AVRIM +SP+R+T
Sbjct: 130 AEILDQLLTIAYHQGLSPREIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALSPRRVT 189
Query: 119 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178
+STVGI I + + G+ LA+SLHAP + R I+P A +P+ ++M A++ Y +
Sbjct: 190 LSTVGIPKGIYRLAEEDLGVRLALSLHAPDDETRKAIIPTAHRYPIAEIMEAVRHYYAKT 249
Query: 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 238
++++ EY +L GVND A L KLL+ VNLIPFNP T ++
Sbjct: 250 KRRVTFEYTLLKGVNDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVAGTPRAAILAFA 309
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 281
+++ R + ++R GQD+ ACGQL + +P ++ + P
Sbjct: 310 EELKR--LGVPVSIRWSRGQDVGAACGQLALKVPKPLTFRPLP 350
>gi|407715866|ref|YP_006837146.1| ribosomal RNA large subunit methyltransferase N [Cycloclasticus sp.
P1]
gi|407256202|gb|AFT66643.1| Ribosomal RNA large subunit methyltransferase N [Cycloclasticus sp.
P1]
Length = 359
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/252 (42%), Positives = 157/252 (62%), Gaps = 9/252 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----SNIRNVV 84
P R TLC+SSQVGC + C FC+T T GF NLS EI+ Q+ A + +N+ NVV
Sbjct: 98 PEEGRGTLCVSSQVGCALECTFCSTATQGFNRNLSVAEIIGQVWVAVKALKGKANLTNVV 157
Query: 85 FMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N+ V A+ + M + ++ +R+TVST G+V A+ + +++ +LAVS
Sbjct: 158 MMGMGEPLLNFNNTVTALNLMMDDFAYGLAKRRVTVSTSGVVPAMYRL-AEVSDASLAVS 216
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQL 202
LHAP ++R +++P + +P+ +L+ A K Y K ++KI EY+ML GVND + AH+L
Sbjct: 217 LHAPNDELRNELVPINKKYPIAELLEACKYYIKGEKRRKITFEYVMLSGVNDSVEQAHEL 276
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
+LL VNLIPFNP + + ++ SS++ + F +L+ + + TT RK G DI
Sbjct: 277 KRLLADVPSKVNLIPFNPFPN-THYKRSSNNAIHRFTNVLKEA-GLITTTRKTRGDDIDA 334
Query: 263 ACGQLVVNLPDK 274
ACGQLV + DK
Sbjct: 335 ACGQLVGKVKDK 346
>gi|406997882|gb|EKE15886.1| YloN [uncultured bacterium]
Length = 346
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 153/243 (62%), Gaps = 14/243 (5%)
Query: 37 CISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV----HASRLSN--IRNVVFMGMGE 90
C+SSQ+GC MGC FCATG MGFK NL++ EI +Q++ + +L N I N+V+MGMGE
Sbjct: 104 CVSSQIGCAMGCRFCATGKMGFKRNLTAEEITDQILFWKQYLKKLKNNSISNIVYMGMGE 163
Query: 91 PLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 149
P N+ + E+++I+T F + ++VST GI I K + P +NLA+SLH P
Sbjct: 164 PFLNWENVSESLKILTSKDLFGFGSRSLSVSTSGIAEGILKLAEEFPQVNLAISLHFPDD 223
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
+ R + MP + LEK+ AL++Y + +++K+F+EYI+LDG+ND E+ A +L K L +
Sbjct: 224 EKRSEFMPVNKKDNLEKIKEALQKYFQKTKRKVFVEYILLDGINDSEKDAEKLAKYLHSI 283
Query: 210 ----QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 265
+ +NLI +N + + F SS +K F++ L I +T+RK +G++I GACG
Sbjct: 284 GNAHLLHINLIRYNM--TSADFLPSSRNKAYIFKEFL-SKRKINSTIRKSLGEEIQGACG 340
Query: 266 QLV 268
QL
Sbjct: 341 QLA 343
>gi|20807945|ref|NP_623116.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
tengcongensis MB4]
gi|81590646|sp|Q8R9T4.1|RLMN_THETN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|20516515|gb|AAM24720.1| predicted Fe-S-cluster redox enzyme [Thermoanaerobacter
tengcongensis MB4]
Length = 342
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 156/237 (65%), Gaps = 6/237 (2%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-SRLSNIRNVVFMGMGEPL 92
+T C+S+QVGC M C FCA+ G +L + E+V+Q++ S I N+V MG GEP
Sbjct: 101 NTACVSTQVGCNMKCKFCASAIGGKVRDLKASEMVDQVMAIDSDYGKISNIVLMGSGEPF 160
Query: 93 NNYAALVEAVRIMTGLPF--QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 150
+NY +++ ++I+ P+ ++ + IT+STVGIV I +F + +NL++SLHAP +
Sbjct: 161 DNYDEVMKFIKIVNN-PYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHAPNNE 219
Query: 151 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 210
+R ++MP RA+PLE+LM A + Y + + ++I EY ++DGVND+++HA+QL LL+
Sbjct: 220 LRNELMPINRAYPLEELMKACRYYIEKTNRRITFEYALIDGVNDKKEHAYQLVDLLKGML 279
Query: 211 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLIP N + + FR S+++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 280 CHVNLIPINYVKEIG-FRKSNNEKVMMFKKIIENA-GITCTVRRELGSDIEAACGQL 334
>gi|124515329|gb|EAY56839.1| putative radical SAM family protein [Leptospirillum rubarum]
Length = 379
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 166/300 (55%), Gaps = 36/300 (12%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
++ G +E+V++ D R+TLC+SSQVGC +GC FC T MG
Sbjct: 85 LELSGGALIESVLIPRDD--------------RATLCVSSQVGCGIGCRFCRTAEMGLVR 130
Query: 61 NLSSGEIVEQLVHASRL-------------------SNIRNVVFMGMGEPLNNYAALVEA 101
NLS EI+ Q+ A+RL S + ++VFMGMGEPL N+ LV +
Sbjct: 131 NLSVSEILGQVRVANRLLAEAPVRDMSKETDPTPFLSRVNHLVFMGMGEPLANFDHLVRS 190
Query: 102 VRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 160
+ ++T F +S +RITVST G+ I + +NLAVSL AP +++R +MP +R
Sbjct: 191 LAVLTSPEGFGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEELRENLMPISR 250
Query: 161 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 220
P+ +++A + Y ++Q+I EY++L GVND E A +L +LL F+ VNLIPFNP
Sbjct: 251 HHPIRSILSACRAYPLRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRSKVNLIPFNP 310
Query: 221 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 280
S + D+V FQ+IL + T+R G+DI GACGQL ++ ++ +S+
Sbjct: 311 YPG-SPYHRPDKDRVRRFQEILLAK-GVTATLRTTRGEDILGACGQLALSPSPALTMESS 368
>gi|303326495|ref|ZP_07356938.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3]
gi|302864411|gb|EFL87342.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3]
Length = 353
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/276 (42%), Positives = 165/276 (59%), Gaps = 27/276 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G VE V++ DS R G R T C+SSQVGC MGC FCATG MGF+ N++
Sbjct: 85 EDGALVETVLIPSDS---------REGVRRWTQCLSSQVGCAMGCTFCATGDMGFERNMT 135
Query: 64 SGEIVEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQV 112
GEI+ Q LV L + +RN+VFMGMGEPL N ++ A++ + GL F
Sbjct: 136 MGEILGQILVAREHLGDNRPDWPVLRNLVFMGMGEPLLNLREVMRALQSLNNDKGLNF-- 193
Query: 113 SPKRITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
SP+RITVST GI + + + GL LAVSLHAP Q++R +IMP A +PL++L+ AL
Sbjct: 194 SPRRITVSTCGIEKGLAELGAS--GLAYLAVSLHAPTQELRARIMPKAARWPLDQLLAAL 251
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
K Y ++++I EY++L G+ND A +L +L+ + +NLI +NP + +
Sbjct: 252 KSYPLKTRERITFEYLLLGGINDGPGQAGELARLVADIKGKLNLIVYNP-AEGAPYAAPD 310
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +V +F++ L +I VRK GQDI ACGQL
Sbjct: 311 EARVLAFEQCL-WKRHITAIVRKSKGQDIKAACGQL 345
>gi|407893166|ref|ZP_11152196.1| hypothetical protein Dmas2_03745 [Diplorickettsia massiliensis 20B]
Length = 315
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/262 (40%), Positives = 160/262 (61%), Gaps = 14/262 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R TLC+SSQVGC + C+FC+TG GF NL EI+ Q+ A S
Sbjct: 52 PERNRGTLCVSSQVGCALNCSFCSTGKQGFSRNLRIDEIIAQVWIAVHFVSKHIEFFSSR 111
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ A+V A+ +M + S +R+T+ST GIV + K S + +
Sbjct: 112 VTNVVMMGMGEPLLNFEAVVPAMNLMMDDFAYGFSKRRVTLSTSGIVPMLKKL-SQVSDV 170
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQ 197
LA+SLHAP ++R +++P + +PL +L+ A + Y ++S+++I +EY++LDG+ND+
Sbjct: 171 ALAISLHAPNDELRNELVPINKKYPLRELLEACRHYFSQDSRRRITMEYVLLDGINDQLH 230
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL ++L+ V VNLIPFNP + +R S ++ F+ L + + T VRK G
Sbjct: 231 HAQQLIQILQGISVKVNLIPFNPFPRTT-YRRSPQHQIERFRDYLLKA-GLNTIVRKTRG 288
Query: 258 QDISGACGQLVVNLPDKISAKS 279
QDI ACGQLV + +++ +S
Sbjct: 289 QDIDAACGQLVGRVKQELAEQS 310
>gi|440510102|ref|YP_007347538.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia chromaiodes str. 640]
gi|440454315|gb|AGC03807.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia chromaiodes str. 640]
Length = 373
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/267 (40%), Positives = 162/267 (60%), Gaps = 24/267 (8%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQ+GC +GC+FC T GF NL+ EI+ Q+ A++ N
Sbjct: 106 PENKRTTLCVSSQIGCPLGCSFCGTAQQGFNRNLNVSEIIGQVWRAAQFINLNKKIKIKN 165
Query: 80 ----IRNVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHS- 133
I N+VFMGMGEPL N +V A+R I+ L F++S + IT+ST GIV I K +
Sbjct: 166 NRFPITNIVFMGMGEPLLNIVNVVSAIRIILDDLGFKLSKRHITLSTAGIVPGIEKLKNM 225
Query: 134 -DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ---KNSQQKIFIEYIML 189
D+P LA+SLHAP +R +IMP + + + ++ A + Y K++ +I IEY++L
Sbjct: 226 IDIP---LAISLHAPNDIIRNKIMPINKKYNINSVLEAARRYSIDTKSNHGRITIEYVLL 282
Query: 190 DGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 249
+ND+ HAHQL K L+ +NLIP+NPI ++ ++ SS ++ +F K+L YNI
Sbjct: 283 KNINDDVLHAHQLAKQLQGIPCKINLIPWNPIPNI-RYACSSQIRMRAFLKVLL-KYNII 340
Query: 250 TTVRKQMGQDISGACGQLVVNLPDKIS 276
T +RK G DI+ ACGQL + ++I+
Sbjct: 341 TIIRKIRGADINAACGQLTGEVINRIN 367
>gi|254479559|ref|ZP_05092874.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM
12653]
gi|214034497|gb|EEB75256.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM
12653]
Length = 336
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 156/237 (65%), Gaps = 6/237 (2%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-SRLSNIRNVVFMGMGEPL 92
+T C+S+QVGC M C FCA+ G +L + E+V+Q++ S I N+V MG GEP
Sbjct: 95 NTACVSTQVGCNMKCKFCASAIGGKVRDLKASEMVDQVMAIDSDYGKISNIVLMGSGEPF 154
Query: 93 NNYAALVEAVRIMTGLPF--QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 150
+NY +++ ++I+ P+ ++ + IT+STVGIV I +F + +NL++SLHAP +
Sbjct: 155 DNYDEVMKFIKIVNN-PYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHAPNNE 213
Query: 151 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 210
+R ++MP RA+PLE+LM A + Y + + ++I EY ++DGVND+++HA+QL LL+
Sbjct: 214 LRNELMPINRAYPLEELMKACRYYIEKTNRRITFEYALIDGVNDKKEHAYQLVDLLKGML 273
Query: 211 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLIP N + + FR S+++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 274 CHVNLIPINYVKEIG-FRKSNNEKVMMFKKIIENA-GITCTVRRELGSDIEAACGQL 328
>gi|427799644|ref|ZP_18967554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm5]
gi|414064192|gb|EKT45183.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm5]
Length = 388
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKVPGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|161502321|ref|YP_001569433.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. arizonae serovar 62:z4,z23:- str.
RSK2980]
gi|205829874|sp|A9MHL3.1|RLMN_SALAR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|160863668|gb|ABX20291.1| hypothetical protein SARI_00353 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 388
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDAIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|422956104|ref|ZP_16968578.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H494]
gi|371600402|gb|EHN89176.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H494]
Length = 384
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQ+ +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQMAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|343085190|ref|YP_004774485.1| ribosomal RNA large subunit methyltransferase N [Cyclobacterium
marinum DSM 745]
gi|342353724|gb|AEL26254.1| Ribosomal RNA large subunit methyltransferase N [Cyclobacterium
marinum DSM 745]
Length = 349
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 145/246 (58%), Gaps = 9/246 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNI------RN 82
P R T C+SSQVGC + CNFCAT + NL+ EI +Q+V +++ N
Sbjct: 100 PTSKRITACVSSQVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIQEEASLYFDRPLTN 159
Query: 83 VVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
+VFMGMGEPL NY ++ A+ +I + +SPKRIT+STVGI I K D NLA
Sbjct: 160 IVFMGMGEPLLNYQNVLSAIEKICSPEGLGISPKRITLSTVGIGKMIRKLADDEVKFNLA 219
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
+SLH+ + + R ++MP +E L ALK + +++K+ EY++ DG+ND+E+HA
Sbjct: 220 LSLHSAINETRTRLMPINETNTVEDLAMALKYWYSKTKRKVTYEYVIWDGINDDEKHARA 279
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L K + VN+I +NPI +FR +S DK+ + IL GS I VRK GQDI
Sbjct: 280 LAKFCKHIPSKVNIIQYNPIDE-GEFRQASQDKIDLYLSILEGS-GIIANVRKSRGQDID 337
Query: 262 GACGQL 267
ACGQL
Sbjct: 338 AACGQL 343
>gi|32474560|ref|NP_867554.1| Fe-S oxidoreductase [Rhodopirellula baltica SH 1]
gi|81660696|sp|Q7UPG1.1|Y6963_RHOBA RecName: Full=Probable RNA methyltransferase RB6963
gi|32445099|emb|CAD75101.1| conserved hypothetical protein-putative Fe-S-cluster redox enzyme
[Rhodopirellula baltica SH 1]
Length = 379
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 157/273 (57%), Gaps = 20/273 (7%)
Query: 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSN 61
+ ++G +E+VI+R + R+TLC+SSQ+GC C+FCATG MG N
Sbjct: 81 ETESGMLIESVILRIATG-------------RTTLCVSSQIGCAAACDFCATGKMGIAKN 127
Query: 62 LSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPK 115
L++ EI++Q+V A ++ + N+VFMGMGEPL+N + EA+ ++T F SP
Sbjct: 128 LATEEILDQVVQAGQILRGEDRRLSNIVFMGMGEPLHNEVNVTEAIELLTAPDHFARSPS 187
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
+ VSTVG+ + + P LNLA+SLH+ Q R +I+P + L +L +A+ E Q
Sbjct: 188 TVLVSTVGVPAGMLRLAKRFPNLNLALSLHSADQTTREKIIPLGKKASLAQLHDAIHEIQ 247
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235
++ IEY+ML VND + A +L + +V VNLIP+N I + SS +
Sbjct: 248 TIQDREFMIEYLMLRDVNDSAKDADRLIDWIGDLRVHVNLIPYNTIEASPHLHASSRPVI 307
Query: 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 268
SF IL+ S ++TTVR +G DI ACGQL+
Sbjct: 308 ESFADILKAS-GLKTTVRYSLGNDIEAACGQLI 339
>gi|429091189|ref|ZP_19153877.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 1210]
gi|429097418|ref|ZP_19159524.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 582]
gi|426283758|emb|CCJ85637.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 582]
gi|426744313|emb|CCJ79990.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 1210]
Length = 388
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + N+ Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|146329686|ref|YP_001209425.1| hypothetical protein DNO_0514 [Dichelobacter nodosus VCS1703A]
gi|205829748|sp|A5EVN1.1|RLMN_DICNV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146233156|gb|ABQ14134.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
Length = 364
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 158/259 (61%), Gaps = 15/259 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV------EQLVHASRLSNIR- 81
P R TLCISSQ GC + C FC+T GF NL++GEIV ++LVH R N R
Sbjct: 98 PEDDRGTLCISSQAGCALACPFCSTARAGFNRNLTTGEIVVQVWLAKELVHCERNGNSRL 157
Query: 82 --NVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N+ ++ A I M+ F +S +R+T+ST G+V AI+K ++ L
Sbjct: 158 ITNVVLMGMGEPLINFNQVLPATEIFMSDWGFGLSKRRVTLSTSGVVPAIHKLR-EVTDL 216
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEE 196
+LAVSLHAP ++R +I+P + + L+ L+ A Y +N++Q I EY+ML GVND
Sbjct: 217 SLAVSLHAPNDELRNKIVPINQRYGLKALIEACALYAENNKQHGGITWEYVMLKGVNDTL 276
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
+HA QL LL +NLIPFN + S F+ SS + + FQ+ L+ + I T+RK
Sbjct: 277 EHAQQLADLLRNVPGKINLIPFNEFPN-SPFQCSSWEDIVRFQQFLQKAGYI-ATIRKTR 334
Query: 257 GQDISGACGQLVVNLPDKI 275
G DI ACGQLV + D+I
Sbjct: 335 GDDIDAACGQLVGRVNDRI 353
>gi|429081719|ref|ZP_19144819.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
condimenti 1330]
gi|426549611|emb|CCJ70860.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
condimenti 1330]
Length = 388
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + N+ Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|326794512|ref|YP_004312332.1| ribosomal RNA large subunit methyltransferase N [Marinomonas
mediterranea MMB-1]
gi|326545276|gb|ADZ90496.1| Ribosomal RNA large subunit methyltransferase N [Marinomonas
mediterranea MMB-1]
Length = 373
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 156/259 (60%), Gaps = 17/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R+TLC+SSQVGC + C+FC+TG GF NL+ EI+ QL A +
Sbjct: 102 PDGDRATLCVSSQVGCSLDCSFCSTGKQGFNRNLTPAEIIGQLWIAIKSFGPMDPNGPRR 161
Query: 80 IRNVVFMGMGEPLNNYAALVEA-VRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ +V+A + +M + +S +R+T+ST G+V I + +
Sbjct: 162 VTNVVMMGMGEPLMNFEPVVDAMILMMHDNAYGLSKRRVTLSTSGVVPKIYEL-VKRTDV 220
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEE 196
+LA+SLHAP +R +++P R +P+E+L+ A + Y N ++ I IEY M+ GVND+E
Sbjct: 221 SLAISLHAPNNPLRDELVPINRKYPIEELLEACQHYLDNLPDKRHITIEYTMMAGVNDQE 280
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS-YNIRTTVRKQ 255
QHA +L LL+ + VNLIPFNP S + S+++ FQKIL Y + TVR
Sbjct: 281 QHARELAHLLKDLECKVNLIPFNPFPH-SGYEKPSNNQTRRFQKILADDGYTV--TVRTT 337
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV + DK
Sbjct: 338 RGDDIDAACGQLVGDFHDK 356
>gi|389840011|ref|YP_006342095.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ES15]
gi|387850487|gb|AFJ98584.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ES15]
Length = 388
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + N+ Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|262280923|ref|ZP_06058706.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
calcoaceticus RUH2202]
gi|262257823|gb|EEY76558.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
calcoaceticus RUH2202]
Length = 411
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 163/261 (62%), Gaps = 20/261 (7%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSN 79
G R TLCISSQVGC + C+FC+TG GF+ +L+ EI+ QL A+ R +
Sbjct: 132 GLRKTLCISSQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERERS 191
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL NY A++ +++IM + +S +R+T+ST G+V I++ D+ +
Sbjct: 192 VTNVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDI-DV 250
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVN 193
LA+SLHAP ++R +++P + +PL +L+ A + Y ++S++ + IEY+ML+GVN
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESSRKHVTIEYVMLEGVN 310
Query: 194 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253
D +HA Q+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R
Sbjct: 311 DHPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIR 368
Query: 254 KQMGQDISGACGQLVVNLPDK 274
+ G DI ACGQLV + D+
Sbjct: 369 QTRGDDIDAACGQLVGQVADR 389
>gi|222110300|ref|YP_002552564.1| radical sam enzyme, cfr family [Acidovorax ebreus TPSY]
gi|221729744|gb|ACM32564.1| radical SAM enzyme, Cfr family [Acidovorax ebreus TPSY]
Length = 383
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 154/263 (58%), Gaps = 20/263 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLCISSQ GC +GC FC+TG GF NL++GEI+ QL +A
Sbjct: 105 PEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEILAQLWYAEHALRQRRGDGERV 164
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NYAALV A+R+M + +S +R+TVST G+V +++ D P +
Sbjct: 165 ISNVVMMGMGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCP-V 223
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P R +PL +L+ A + Y ++ + I EY ML+GVND+ +
Sbjct: 224 ALAVSLHAPNDVLRDNLVPLNRKYPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPE 283
Query: 198 HAHQLGKLLET------FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251
HA QL L+ NLIPFNP S R S V++F ++L + I TT
Sbjct: 284 HARQLIDLVGRKAADGGVSCKFNLIPFNPF-PASGLRRSPPAAVTAFAQLLSDA-GIVTT 341
Query: 252 VRKQMGQDISGACGQLVVNLPDK 274
VRK G DI ACGQL ++ D+
Sbjct: 342 VRKTRGDDIDAACGQLAGDVKDR 364
>gi|156932938|ref|YP_001436854.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ATCC BAA-894]
gi|417791222|ref|ZP_12438697.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii E899]
gi|424800635|ref|ZP_18226177.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 696]
gi|429116542|ref|ZP_19177460.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 701]
gi|429121143|ref|ZP_19181789.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 680]
gi|449307260|ref|YP_007439616.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii SP291]
gi|205829756|sp|A7MGV3.1|RLMN_CROS8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|156531192|gb|ABU76018.1| hypothetical protein ESA_00741 [Cronobacter sakazakii ATCC BAA-894]
gi|333954665|gb|EGL72492.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii E899]
gi|423236356|emb|CCK08047.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 696]
gi|426319671|emb|CCK03573.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 701]
gi|426324427|emb|CCK12526.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 680]
gi|449097293|gb|AGE85327.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii SP291]
Length = 388
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + N+ Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|440286596|ref|YP_007339361.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440046118|gb|AGB77176.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 388
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|218295831|ref|ZP_03496611.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23]
gi|218243569|gb|EED10097.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23]
Length = 349
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/287 (38%), Positives = 164/287 (57%), Gaps = 24/287 (8%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G EAV M Y + R T+C+SS VGC GC FCATG +GF NL++
Sbjct: 78 DGKKTEAVYMPYKN--------------RKTVCLSSMVGCPAGCTFCATGALGFGRNLTA 123
Query: 65 GEIVEQLV---HASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRIT 118
EI+ QL+ H LS IRNVV MGMGEPL N +++A+R+M +SP+RIT
Sbjct: 124 AEILSQLLAIAHHQGLSPREIRNVVLMGMGEPLLNLTNVLKAIRVMLHPKALAMSPRRIT 183
Query: 119 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178
+STVGI I + + G+ LA+SLHAP + R +I+P A +P+ ++M A++ Y + +
Sbjct: 184 LSTVGIPRGILRLAEEDVGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMAAVRRYYERT 243
Query: 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 238
++++ EY +L G+ND A L KLL+ VNLIPFNP + + + + +F
Sbjct: 244 KRRVTFEYTLLKGLNDHLWQARLLAKLLKGISAHVNLIPFNPWEN-APVEGTPKAGILAF 302
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTD 285
+ LR + T++R G+D+ ACGQL + P ++ TP + D
Sbjct: 303 AEELR-RLGVSTSIRWSRGRDVGAACGQLALKAPKALT--FTPLLED 346
>gi|27262416|gb|AAN87489.1| florfenicol resistance protein [Heliobacillus mobilis]
Length = 360
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/271 (38%), Positives = 155/271 (57%), Gaps = 19/271 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+M Y S + R T+C+S+Q GC +GC FCATG GF+ NL++
Sbjct: 91 DGELIETVLMPYRRSQTR---------DRVTVCLSTQAGCPLGCKFCATGQQGFRRNLTA 141
Query: 65 GEIVEQLV---HASRLSN----IRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ-VSPKR 116
GEIV Q++ H S+ + N+VFMGMGEP NY + A+ + T Q + +R
Sbjct: 142 GEIVSQVLDITHRKGQSDPDFKVTNLVFMGMGEPFLNYEQVRRAIELFTHPEGQNIGQRR 201
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
ITVST GIV I +F + +NLA+SLHA +R Q MP R +P+EK++NA + Y +
Sbjct: 202 ITVSTSGIVPGIERFARENWEINLALSLHAADDQLRSQWMPVNRQYPIEKVLNACRRYWE 261
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
++++ +EY +++GVND + A QLGKL + + +N+IP NP+ R V
Sbjct: 262 QGRRRLSVEYALIEGVNDRLEDARQLGKLFTRWPIHLNVIPVNPVTESGARRPDKARMVQ 321
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ R I +R++ G DI ACGQL
Sbjct: 322 FLDELKR--QGIDAVIREERGVDIEAACGQL 350
>gi|399116783|emb|CCG19592.1| ribosomal RNA large subunit methyltransferase [Taylorella
asinigenitalis 14/45]
Length = 380
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 160/292 (54%), Gaps = 35/292 (11%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D QN +E V + P R TLCISSQ GC + C FC+TG GF
Sbjct: 86 FDVQNNNAIETVYI--------------PEDDRGTLCISSQAGCTVACRFCSTGHQGFNR 131
Query: 61 NLSSGEIVEQL----------------VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRI 104
NL++ EI+ Q+ + A I NVVFMGMGEPL NY ++ A+++
Sbjct: 132 NLNTSEIIGQVWWARDEIKKSLNTDSGLEAEDDRVITNVVFMGMGEPLLNYDQVLPAIKL 191
Query: 105 MTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 163
+ + +S +R+TVST G++ ++K D P + LAVSLHAP ++R Q++P + +P
Sbjct: 192 LIDQNAYGLSKRRVTVSTSGVIPFMDKLSQDCP-VALAVSLHAPNDELRDQLIPLNKKYP 250
Query: 164 LEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 222
L +LM+A Y + + + I EYIMLDGVND + HA QL + + VNLIPFNP
Sbjct: 251 LRELMDACNRYIEFAPRDFITFEYIMLDGVNDTDAHAKQLIDICREVKSKVNLIPFNPFP 310
Query: 223 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
S R SS ++V +F IL + I T RK G DI ACGQL ++ DK
Sbjct: 311 E-SGLRRSSHERVRAFSAILNDA-GIVATTRKTRGDDIDAACGQLAGDIKDK 360
>gi|293610293|ref|ZP_06692594.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|375137029|ref|YP_004997679.1| putative Fe-S-cluster redox enzyme [Acinetobacter calcoaceticus
PHEA-2]
gi|427423139|ref|ZP_18913305.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-136]
gi|292827525|gb|EFF85889.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325124474|gb|ADY83997.1| putative Fe-S-cluster redox enzyme [Acinetobacter calcoaceticus
PHEA-2]
gi|425700239|gb|EKU69830.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-136]
Length = 411
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 164/261 (62%), Gaps = 20/261 (7%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSN 79
G R TLCISSQVGC + C+FC+TG GF+ +L+ EI+ QL A+ R +
Sbjct: 132 GLRKTLCISSQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERERS 191
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL NY A++ +++IM + +S +R+T+ST G+V I++ D+ +
Sbjct: 192 VTNVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDI-DV 250
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVN 193
LA+SLHAP ++R +++P + +PL +L+ A + Y +++++ + IEY+ML+GVN
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVN 310
Query: 194 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253
D+ +HA Q+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R
Sbjct: 311 DQPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIR 368
Query: 254 KQMGQDISGACGQLVVNLPDK 274
+ G DI ACGQLV + D+
Sbjct: 369 QTRGDDIDAACGQLVGQVADR 389
>gi|121593579|ref|YP_985475.1| radical SAM protein [Acidovorax sp. JS42]
gi|205829704|sp|A1W574.1|RLMN_ACISJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120605659|gb|ABM41399.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax sp. JS42]
Length = 374
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 154/263 (58%), Gaps = 20/263 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLCISSQ GC +GC FC+TG GF NL++GEI+ QL +A
Sbjct: 96 PEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEILAQLWYAEHALRQRRGDGERV 155
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NYAALV A+R+M + +S +R+TVST G+V +++ D P +
Sbjct: 156 ISNVVMMGMGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCP-V 214
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P R +PL +L+ A + Y ++ + I EY ML+GVND+ +
Sbjct: 215 ALAVSLHAPNDVLRDNLVPLNRKYPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPE 274
Query: 198 HAHQLGKLLET------FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251
HA QL L+ NLIPFNP S R S V++F ++L + I TT
Sbjct: 275 HARQLIDLVGRKAADGGVSCKFNLIPFNPF-PASGLRRSPPAAVTAFAQLLSDA-GIVTT 332
Query: 252 VRKQMGQDISGACGQLVVNLPDK 274
VRK G DI ACGQL ++ D+
Sbjct: 333 VRKTRGDDIDAACGQLAGDVKDR 355
>gi|407071964|ref|ZP_11102802.1| ribosomal RNA large subunit methyltransferase N [Vibrio
cyclitrophicus ZF14]
Length = 380
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P G R+TLC+SSQVGC + C FC+T GF NL EIV Q+ ASR
Sbjct: 99 PDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIWRASREIGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ ++ IM L F +S +R+TVST G+V +++ +D +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPSLEIMLDDLGFALSKRRVTVSTSGVVSGLDQM-TDNIDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R QIMP + ++ + +++ Y +S + K+ +EY++LD VND+
Sbjct: 218 ALAISLHAPNDALRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HA +L +L++ +NLIPFNP S ++ S+ ++ FQK L YN TVRK
Sbjct: 278 MDHARELAELMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-EYNYTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|424743184|ref|ZP_18171497.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-141]
gi|422943445|gb|EKU38461.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-141]
Length = 411
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 164/261 (62%), Gaps = 20/261 (7%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSN 79
G R TLCISSQVGC + C+FC+TG GF+ +L+ EI+ QL A+ R +
Sbjct: 132 GLRKTLCISSQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERERS 191
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL NY A++ +++IM + +S +R+T+ST G+V I++ D+ +
Sbjct: 192 VTNVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDI-DV 250
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVN 193
LA+SLHAP ++R +++P + +PL +L+ A + Y +++++ + IEY+ML+GVN
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVN 310
Query: 194 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253
D+ +HA Q+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R
Sbjct: 311 DQPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIR 368
Query: 254 KQMGQDISGACGQLVVNLPDK 274
+ G DI ACGQLV + D+
Sbjct: 369 QTRGDDIDAACGQLVGQVADR 389
>gi|417476930|ref|ZP_12171284.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
gi|353639177|gb|EHC84531.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
Length = 401
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 127 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 186
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 187 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 245
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 246 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 305
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 306 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 363
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 364 RGDDIDAACGQLAGDVIDR 382
>gi|299771620|ref|YP_003733646.1| hypothetical protein AOLE_16930 [Acinetobacter oleivorans DR1]
gi|298701708|gb|ADI92273.1| UPF0063 protein yfgB [Acinetobacter oleivorans DR1]
Length = 411
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 164/261 (62%), Gaps = 20/261 (7%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSN 79
G R TLCISSQVGC + C+FC+TG GF+ +L+ EI+ QL A+ R +
Sbjct: 132 GLRKTLCISSQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERERS 191
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL NY A++ +++IM + +S +R+T+ST G+V I++ D+ +
Sbjct: 192 VTNVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDI-DV 250
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVN 193
LA+SLHAP ++R +++P + +PL +L+ A + Y +++++ + IEY+ML+GVN
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVN 310
Query: 194 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253
D+ +HA Q+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R
Sbjct: 311 DQPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIR 368
Query: 254 KQMGQDISGACGQLVVNLPDK 274
+ G DI ACGQLV + D+
Sbjct: 369 QTRGDDIDAACGQLVGQVADR 389
>gi|50083794|ref|YP_045304.1| Fe-S-cluster redox enzyme [Acinetobacter sp. ADP1]
gi|81393776|sp|Q6FEM6.1|RLMN_ACIAD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|49529770|emb|CAG67482.1| conserved hypothetical protein; putative Fe-S-cluster redox enzyme
[Acinetobacter sp. ADP1]
Length = 414
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 160/261 (61%), Gaps = 20/261 (7%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSN 79
G R TLCISSQVGC + C+FC+TG GF+ +L+ EI+ QL A+ R
Sbjct: 135 GSRKTLCISSQVGCALDCSFCSTGKQGFQRDLTPAEIIGQLWVANQSYVEDVPVAERTRA 194
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ +V ++ IM + +S +R+T+ST G+V I+K +L +
Sbjct: 195 VTNVVMMGMGEPLLNFKPVVHSMSIMLDDYAYGMSKRRVTLSTSGVVPMIDKLAEEL-DV 253
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVN 193
LA+SLHAP +R +++P + +PLE+L+ A + Y +++++ + IEY+MLDGVN
Sbjct: 254 ALAISLHAPNNPLRDELVPINKKYPLEQLIAAAQRYITKDGNESARKHVTIEYVMLDGVN 313
Query: 194 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253
D +HA QL KLL+ +NLIPFNP R SS +++ +FQK L + + T+R
Sbjct: 314 DHPEHAQQLVKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIMAFQKTLSDAGFV-CTIR 371
Query: 254 KQMGQDISGACGQLVVNLPDK 274
+ G DI ACGQLV + D+
Sbjct: 372 QTRGDDIDAACGQLVGQVADR 392
>gi|406947137|gb|EKD78125.1| hypothetical protein ACD_42C00034G0001 [uncultured bacterium]
Length = 368
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/255 (43%), Positives = 156/255 (61%), Gaps = 13/255 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV-------EQLVHASRLSNIR 81
P R TLC+SSQVGC + C+FC+TG GF NLS EI+ ++L RL+ I
Sbjct: 99 PEKTRGTLCVSSQVGCALNCSFCSTGKEGFNRNLSLAEIIGQVFLVRDKLKDKPRLT-IT 157
Query: 82 NVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 140
NVV MGMGEPL NY ++EA+ +MT L + +S R+T+ST G+V + + D P ++L
Sbjct: 158 NVVMMGMGEPLLNYPPVIEAMDLMTHDLAYGLSKYRVTLSTSGVVPMMLQLKKDSP-VSL 216
Query: 141 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHA 199
AVSLHAP ++R Q++P + +PLE LM + Y +S++ I EY+ML +ND HA
Sbjct: 217 AVSLHAPTNELREQLVPINKKYPLEVLMPVCRNYFPADSKRCIVFEYVMLKNINDSLTHA 276
Query: 200 HQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 259
QL +LL+ VNLIPFNP + + S + + +FQ L + I+T +RK G+D
Sbjct: 277 KQLIRLLDNMPCKVNLIPFNPFPK-TNYVCSDMETILAFQNRLTAA-GIKTWIRKTRGED 334
Query: 260 ISGACGQLVVNLPDK 274
I GACGQL + D+
Sbjct: 335 IDGACGQLAGDFTDR 349
>gi|452123647|ref|YP_007473895.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Javiana str.
CFSAN001992]
gi|451912651|gb|AGF84457.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Javiana str.
CFSAN001992]
Length = 388
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLDKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|242240158|ref|YP_002988339.1| ribosomal RNA large subunit methyltransferase N [Dickeya dadantii
Ech703]
gi|242132215|gb|ACS86517.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech703]
Length = 393
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 118 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 177
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 178 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 236
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + +E + A++ Y S Q ++ +EY+MLD +ND
Sbjct: 237 ALAISLHAPTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDG 296
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 297 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 354
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 355 RGDDIDAACGQLAGEVVDR 373
>gi|417122505|ref|ZP_11971763.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0246]
gi|386147785|gb|EIG94225.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0246]
Length = 384
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPCGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|345887545|ref|ZP_08838720.1| ribosomal RNA large subunit methyltransferase N [Bilophila sp.
4_1_30]
gi|345041710|gb|EGW45844.1| ribosomal RNA large subunit methyltransferase N [Bilophila sp.
4_1_30]
Length = 357
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 116/276 (42%), Positives = 163/276 (59%), Gaps = 27/276 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G VE VI+ S G+ G R C+SSQ+GC MGC FC+TGTMGF N++
Sbjct: 85 RDGTLVETVIL---PSTGQ------DGSVRIAQCVSSQIGCAMGCTFCSTGTMGFIRNMT 135
Query: 64 SGEIVEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQV 112
+GEI+ Q LV RL + IRN+VFMGMGEPL N A+ ++ G+ F
Sbjct: 136 AGEILSQVLVARMRLGDNRIDHPIIRNLVFMGMGEPLLNLRETTRALEMLNHDKGMDF-- 193
Query: 113 SPKRITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
SP+RITVST GI + + GL LAVSLHAP Q++R +IMP A + L+ LM L
Sbjct: 194 SPRRITVSTCGIKAGLRELGDS--GLAFLAVSLHAPNQELRAKIMPKAANWHLDDLMATL 251
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
+ Y +++ I EY++L GVND+ +HA +L KL+ + +NLI +NP ++ +
Sbjct: 252 ESYPLKTREHITFEYLLLGGVNDQPEHARELAKLVSRVKGKLNLIAYNP-SETQLYKAPT 310
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ + +F+KIL S + +RK GQDI ACGQL
Sbjct: 311 EADILAFEKIL-WSKGVTAILRKSKGQDIKAACGQL 345
>gi|344942369|ref|ZP_08781657.1| Ribosomal RNA large subunit methyltransferase N [Methylobacter
tundripaludum SV96]
gi|344263561|gb|EGW23832.1| Ribosomal RNA large subunit methyltransferase N [Methylobacter
tundripaludum SV96]
Length = 370
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/252 (43%), Positives = 161/252 (63%), Gaps = 9/252 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL-VHASRL---SNIRNVV 84
P R TLC+SSQ+GC + C FC+T GF NL++ EI+ QL V RL + I NVV
Sbjct: 106 PEEGRGTLCVSSQIGCALACTFCSTAQQGFNRNLTTAEIIGQLFVAQKRLGPGNRITNVV 165
Query: 85 FMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N+ +V A+ +M F +S +R+T+ST G+V A+ + + + ++LAVS
Sbjct: 166 MMGMGEPLLNFDNVVAAMNLMMDDFTFGLSKRRVTISTSGVVPAMYRL-TQVCDVSLAVS 224
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQL 202
LHA ++R +++P + +PL++LM A ++ K + ++ + EY+MLDG+ND Q A L
Sbjct: 225 LHAVTDELRDELVPINKKYPLKELMEACRDNAKIAPRRTVTFEYVMLDGINDSLQDARGL 284
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
KLL+T +NLIPFNP + S +R SS + ++ F+ +L + I TTVRK G+DI
Sbjct: 285 VKLLKTVPSKINLIPFNPFPN-SAYRCSSKEAINCFKTLLNDA-GIVTTVRKTRGEDIDA 342
Query: 263 ACGQLVVNLPDK 274
ACGQLV + DK
Sbjct: 343 ACGQLVGQVKDK 354
>gi|26248881|ref|NP_754921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CFT073]
gi|227887552|ref|ZP_04005357.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
gi|300981979|ref|ZP_07175825.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
gi|301047150|ref|ZP_07194245.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
gi|386630287|ref|YP_006150007.1| hypothetical protein i02_2835 [Escherichia coli str. 'clone D i2']
gi|386635207|ref|YP_006154926.1| hypothetical protein i14_2835 [Escherichia coli str. 'clone D i14']
gi|386640048|ref|YP_006106846.1| radical SAM protein [Escherichia coli ABU 83972]
gi|422364837|ref|ZP_16445347.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1]
gi|432412690|ref|ZP_19655352.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE39]
gi|432432766|ref|ZP_19675193.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE187]
gi|432437249|ref|ZP_19679637.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE188]
gi|432457589|ref|ZP_19699771.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE201]
gi|432496585|ref|ZP_19738381.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE214]
gi|432505328|ref|ZP_19747051.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE220]
gi|432524722|ref|ZP_19761849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE230]
gi|432569611|ref|ZP_19806121.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE53]
gi|432593743|ref|ZP_19830058.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE60]
gi|432608411|ref|ZP_19844595.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE67]
gi|432652051|ref|ZP_19887804.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE87]
gi|432784442|ref|ZP_20018621.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE63]
gi|432845479|ref|ZP_20078279.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE141]
gi|432974678|ref|ZP_20163515.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE209]
gi|432996233|ref|ZP_20184819.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE218]
gi|433000804|ref|ZP_20189328.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE223]
gi|433059003|ref|ZP_20246046.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE124]
gi|433088210|ref|ZP_20274580.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE137]
gi|433116416|ref|ZP_20302205.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE153]
gi|433126086|ref|ZP_20311641.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE160]
gi|433140154|ref|ZP_20325407.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE167]
gi|433150071|ref|ZP_20335089.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE174]
gi|433208650|ref|ZP_20392324.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE97]
gi|433213434|ref|ZP_20397024.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE99]
gi|442608263|ref|ZP_21023023.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
Nissle 1917]
gi|81475264|sp|Q8FF55.1|RLMN_ECOL6 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|26109287|gb|AAN81489.1|AE016764_171 Hypothetical protein yfgB [Escherichia coli CFT073]
gi|227835902|gb|EEJ46368.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
gi|300300936|gb|EFJ57321.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
gi|300408874|gb|EFJ92412.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
gi|307554540|gb|ADN47315.1| radical SAM enzyme [Escherichia coli ABU 83972]
gi|315292442|gb|EFU51794.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1]
gi|355421186|gb|AER85383.1| hypothetical protein i02_2835 [Escherichia coli str. 'clone D i2']
gi|355426106|gb|AER90302.1| hypothetical protein i14_2835 [Escherichia coli str. 'clone D i14']
gi|430934545|gb|ELC54900.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE39]
gi|430952134|gb|ELC71341.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE187]
gi|430962580|gb|ELC80437.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE188]
gi|430981596|gb|ELC98323.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE201]
gi|431023843|gb|ELD37038.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE214]
gi|431037678|gb|ELD48654.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE220]
gi|431051173|gb|ELD60848.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE230]
gi|431099101|gb|ELE04402.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE53]
gi|431127071|gb|ELE29386.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE60]
gi|431137355|gb|ELE39202.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE67]
gi|431189906|gb|ELE89323.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE87]
gi|431328865|gb|ELG16169.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE63]
gi|431394335|gb|ELG77871.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE141]
gi|431488410|gb|ELH68045.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE209]
gi|431505263|gb|ELH83885.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE218]
gi|431508196|gb|ELH86470.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE223]
gi|431568536|gb|ELI41509.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE124]
gi|431603987|gb|ELI73403.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE137]
gi|431633237|gb|ELJ01518.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE153]
gi|431643598|gb|ELJ11289.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE160]
gi|431659158|gb|ELJ26056.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE167]
gi|431669865|gb|ELJ36230.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE174]
gi|431729935|gb|ELJ93554.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE97]
gi|431734459|gb|ELJ97860.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE99]
gi|441710868|emb|CCQ09000.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
Nissle 1917]
Length = 384
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLGKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|401677597|ref|ZP_10809571.1| RlmN Protein [Enterobacter sp. SST3]
gi|400215120|gb|EJO46032.1| RlmN Protein [Enterobacter sp. SST3]
Length = 388
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|157161992|ref|YP_001459310.1| hypothetical protein EcHS_A2668 [Escherichia coli HS]
gi|205829751|sp|A8A323.1|RLMN_ECOHS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157067672|gb|ABV06927.1| radical SAM enzyme, Cfr family [Escherichia coli HS]
Length = 384
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEVDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|357403874|ref|YP_004915798.1| Fe-S-cluster redox protein [Methylomicrobium alcaliphilum 20Z]
gi|351716539|emb|CCE22199.1| putative Fe-S-cluster redox enzyme [Methylomicrobium alcaliphilum
20Z]
Length = 370
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 159/252 (63%), Gaps = 9/252 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR----LSNIRNVV 84
P R TLC+SSQ+GC + C FC+T GF NL++ EI+ QL A + I NVV
Sbjct: 106 PEEGRGTLCVSSQIGCALACTFCSTAQQGFNRNLTTAEIIGQLFAAQKRLGSAQKITNVV 165
Query: 85 FMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N+ +V A+ +M + +S +R+T+ST GIV A+ + +++ ++LAVS
Sbjct: 166 MMGMGEPLLNFDNVVAAMNLMMDDFAYGLSKRRVTISTSGIVPAMYRL-TEVCDVSLAVS 224
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKE-YQKNSQQKIFIEYIMLDGVNDEEQHAHQL 202
LHA ++R +++P + +PL++L+ A ++ ++ +++I EY+MLDG+ND Q A +
Sbjct: 225 LHAVTDELRNELVPINKKYPLKELLAACRDNVIRSPRRRITFEYVMLDGINDSVQDAKAM 284
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
KLL+T +NLIPFNP + S +R SS D + F+ +L + + TT+RK G DI
Sbjct: 285 VKLLKTVPSKINLIPFNPFPN-SSYRCSSSDAIDRFRAVLHNA-GMVTTIRKTRGDDIDA 342
Query: 263 ACGQLVVNLPDK 274
ACGQLV + DK
Sbjct: 343 ACGQLVGKVQDK 354
>gi|302392191|ref|YP_003828011.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM
5501]
gi|302204268|gb|ADL12946.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM
5501]
Length = 350
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 149/244 (61%), Gaps = 11/244 (4%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--------SNIRNVV 84
R+++C+S+QVGC MGCNFCATG G + NL++GEIV Q++ +L S I NVV
Sbjct: 104 RNSICVSTQVGCGMGCNFCATGQQGLERNLTTGEIVSQILKVQQLMGSNGYDPSLISNVV 163
Query: 85 FMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
FMGMGEPL NY + + I+ +S +RITVST G+V I + L LA+S
Sbjct: 164 FMGMGEPLANYDNFLRVIDILNSEKALNISMRRITVSTCGLVPQIKRLADKELQLVLAIS 223
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 203
LHA +R ++MP + +PLE+L+ A + Y + + ++I EY ++DGVN+ Q A +L
Sbjct: 224 LHAAEDKLRSEMMPINKRYPLEELIAACEYYLQKTNRRITFEYALVDGVNNRRQDAEKLA 283
Query: 204 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 263
+LL VNLIP NP+ + R + + F++IL +NI+ TVR++ G DI A
Sbjct: 284 QLLSGLLCHVNLIPVNPVKELGLTRPNR-KAIKEFKEIL-DRHNIQATVRQERGNDIEAA 341
Query: 264 CGQL 267
CGQL
Sbjct: 342 CGQL 345
>gi|90410870|ref|ZP_01218884.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK]
gi|90328083|gb|EAS44394.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK]
Length = 373
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR------- 81
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A++ I
Sbjct: 99 PDGDRATLCVSSQVGCALACTFCSTAQQGFNRNLRVSEIIGQVWRAAKEIGIEKETGRRP 158
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N L+ A+ IM + F +S +R+TVST G+V +++ ++ +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDIGFGLSKRRVTVSTSGVVSGLDQMTGNI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 195
LA+SLHAP ++R QIMP F + + +++ Y Q N+ + ++ +EY++LD VND+
Sbjct: 218 ALAISLHAPTDELRSQIMPINDRFNIATFLESVRRYVEQSNANRGRVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA QL LL+ +NLIPFNP S +R S+ ++ F K L Y+ TVRK
Sbjct: 278 MEHARQLAVLLKDTPAKINLIPFNPYPG-SPYRKPSNSRIDRFMKTLM-EYDFTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|401764742|ref|YP_006579749.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae ENHKU01]
gi|400176276|gb|AFP71125.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae ENHKU01]
Length = 388
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|365971621|ref|YP_004953182.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae EcWSU1]
gi|365750534|gb|AEW74761.1| Ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae EcWSU1]
Length = 388
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|296133296|ref|YP_003640543.1| radical SAM enzyme, Cfr family [Thermincola potens JR]
gi|296031874|gb|ADG82642.1| radical SAM enzyme, Cfr family [Thermincola potens JR]
Length = 356
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 149/237 (62%), Gaps = 5/237 (2%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGEP 91
+++C+S+QVGCKMGC FCA+ GF NLS GEI +Q+ + + + +VV MG GEP
Sbjct: 103 NSVCVSTQVGCKMGCLFCASTIGGFYRNLSPGEIYDQVLRIEQDKKKRVSSVVIMGSGEP 162
Query: 92 LNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 150
L+NY A+++ +R++T V + IT+ST G+V I K + L L+VSLHAP +
Sbjct: 163 LDNYEAVLKFIRLITAPYALNVGMRHITLSTCGLVPQIYKLAEEKLALTLSVSLHAPNNE 222
Query: 151 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 210
+R ++MP R +PLE+L+ A EY K + ++I EY ++ VND + HA +L +L++
Sbjct: 223 LRNKLMPVNRKYPLEELIPACHEYIKKTGRRITFEYTLIKDVNDSQGHAEELARLIKGML 282
Query: 211 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLIP NP+ +R S++ V FQ IL + + TVR++MG DI ACGQL
Sbjct: 283 CHVNLIPVNPVAERRWYRPSTET-VKRFQTILERN-RVPATVRREMGTDIDAACGQL 337
>gi|422026819|ref|ZP_16373193.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm1]
gi|414016811|gb|EKT00570.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm1]
Length = 388
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R+S+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGRSST-SRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|384440606|ref|YP_005655330.1| ribosomal RNA large subunit methyltransferase N [Thermus sp.
CCB_US3_UF1]
gi|359291739|gb|AEV17256.1| Ribosomal RNA large subunit methyltransferase N [Thermus sp.
CCB_US3_UF1]
Length = 358
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/276 (39%), Positives = 159/276 (57%), Gaps = 26/276 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G EAV M Y++ R T+C+SS VGC GC FCATG +GF NL++
Sbjct: 87 DGKKTEAVYMPYEN--------------RKTVCLSSMVGCPAGCTFCATGALGFGRNLTA 132
Query: 65 GEIVEQLV---HASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKR 116
EI+ QL+ H +S IRN V MGMGEPL N +++AVR+M GL +SP+R
Sbjct: 133 AEILSQLLAIAHHQGISPREIRNAVLMGMGEPLLNLTQVLKAVRLMLHPKGL--AMSPRR 190
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
IT+STVGI I + + G+ LA+SLHAP + R +I+P A +P+ +++ A++ Y
Sbjct: 191 ITLSTVGIPRGIYRLAEEDLGVRLALSLHAPDDETRRRIIPTAHRYPMAEILEAVRHYYA 250
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
++++I EY +L GVND A L +LL+ VNLIPFNP + + + +
Sbjct: 251 KTKRRITFEYTLLQGVNDHPWQARLLARLLQGISAHVNLIPFNPWEG-APVKGTPRAGIL 309
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 272
+F + LR + T++R G+D+ ACGQL + P
Sbjct: 310 AFAQELR-RLGVPTSIRWSRGRDVGAACGQLALKAP 344
>gi|333913248|ref|YP_004486980.1| ribosomal RNA large subunit methyltransferase N [Delftia sp. Cs1-4]
gi|333743448|gb|AEF88625.1| Ribosomal RNA large subunit methyltransferase N [Delftia sp. Cs1-4]
Length = 397
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 157/266 (59%), Gaps = 20/266 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN---- 79
P R TLC+SSQ GC +GC FC+TG GF NLS+GEI+ QL +A RL
Sbjct: 119 PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHALRKRLGTGGER 178
Query: 80 -IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPG 137
I NVV MGMGEPL NY ALV A+R M + +S +R+TVST G+V I++ D
Sbjct: 179 VISNVVMMGMGEPLQNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDC-A 237
Query: 138 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEE 196
+ +AVSLHAP ++R ++P R +P+ +L++A + Y + + + I EY MLDGVND+
Sbjct: 238 VAMAVSLHAPNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQP 297
Query: 197 QHAHQLGKLLET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251
+HA QL +L+ NLIPFNP + R+ + +V+ F +L + I TT
Sbjct: 298 EHARQLIELVRARGDGRSWCKFNLIPFNPFPASGLLRSPA-ARVTEFASLLSNA-GIVTT 355
Query: 252 VRKQMGQDISGACGQLVVNLPDKISA 277
VRK G DI ACGQL ++ D+ A
Sbjct: 356 VRKTRGDDIDAACGQLAGDVKDRTRA 381
>gi|160900454|ref|YP_001566036.1| radical SAM protein [Delftia acidovorans SPH-1]
gi|160366038|gb|ABX37651.1| radical SAM enzyme, Cfr family [Delftia acidovorans SPH-1]
Length = 397
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 157/266 (59%), Gaps = 20/266 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN---- 79
P R TLC+SSQ GC +GC FC+TG GF NLS+GEI+ QL +A RL
Sbjct: 119 PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHSLRKRLGTGGER 178
Query: 80 -IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPG 137
I NVV MGMGEPL NY ALV A+R M + +S +R+TVST G+V I++ D
Sbjct: 179 VISNVVMMGMGEPLQNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDC-A 237
Query: 138 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEE 196
+ +AVSLHAP ++R ++P R +P+ +L++A + Y + + + I EY MLDGVND+
Sbjct: 238 VAMAVSLHAPNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQP 297
Query: 197 QHAHQLGKLLET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251
+HA QL +L+ NLIPFNP + R+ + +V+ F +L + I TT
Sbjct: 298 EHARQLIELVRARGDGRSWCKFNLIPFNPFPASGLLRSPA-ARVTEFASLLSNA-GIVTT 355
Query: 252 VRKQMGQDISGACGQLVVNLPDKISA 277
VRK G DI ACGQL ++ D+ A
Sbjct: 356 VRKTRGDDIDAACGQLAGDVKDRTRA 381
>gi|332527850|ref|ZP_08403887.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2]
gi|332112427|gb|EGJ12220.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2]
Length = 372
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 156/257 (60%), Gaps = 14/257 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-RLSN------IR 81
P R TLC+SSQ GC +GC FC+TG GF NLS+GEI+ QL +A RL I
Sbjct: 96 PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEIIAQLRYAEHRLRGPDGQRVID 155
Query: 82 NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 140
NVV MGMGEPL NYAA+V A+R+M + +S +R+TVST G+V I++ D P + L
Sbjct: 156 NVVMMGMGEPLQNYAAVVPALRVMLDDHGYGLSRRRVTVSTSGMVAMIDRLREDCP-VAL 214
Query: 141 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHA 199
AVSLHAP +R ++P R +E L++A Y + + + I EY MLDGVND + A
Sbjct: 215 AVSLHAPDDALRDMLVPINRKDGIEALLDACLRYVEAAPRDFITFEYCMLDGVNDAPEQA 274
Query: 200 HQLGKLLETFQV--VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
QL L+ +V NLIPFNP S + S ++V++F K+L+ + I TT+RK G
Sbjct: 275 QQLVHLVRRRRVPCKFNLIPFNPFPE-SGLKRSPRERVTAFAKVLQDA-GIVTTIRKVRG 332
Query: 258 QDISGACGQLVVNLPDK 274
DI ACGQL + D+
Sbjct: 333 DDIDAACGQLAGEVQDR 349
>gi|149200056|ref|ZP_01877081.1| YloN [Lentisphaera araneosa HTCC2155]
gi|149136814|gb|EDM25242.1| YloN [Lentisphaera araneosa HTCC2155]
Length = 345
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 163/282 (57%), Gaps = 29/282 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
++ +G +E+V+M P+PG T CISSQVGC M C+FCATGTMG
Sbjct: 76 LELHDGLKIESVLM-----------SPKPG--LWTACISSQVGCAMKCSFCATGTMGLTR 122
Query: 61 NLSSGEIVEQLVHASRL--------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQ 111
NL+S EI +Q++ + + NVV+MGMGEPL+N + ++ +T F+
Sbjct: 123 NLTSEEISDQVLFWRQFIAKNDIDTDRLNNVVYMGMGEPLHNTKEVFSSIEELTAEDSFK 182
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+ + I+VST G++ + + P +NLA+SLHA ++R IMP +AF LEK+ L
Sbjct: 183 IGSRHISVSTSGLLKGVKEMAEKFPQVNLALSLHAAKDELRSSIMPINKAFDLEKIRTCL 242
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ----VVVNLIPFNPIGSVSQF 227
EY ++ +K+FIEY++L+G N+E HA +L K L++ + NLI +N S+
Sbjct: 243 DEYIDSTHRKVFIEYVLLEGENNELSHAVELSKFLKSLKRPELTHTNLIVYNETD--SEH 300
Query: 228 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
+ S+ K F+ L+ S + T+RK +G+DI GACGQL V
Sbjct: 301 KGSTKQKADQFRNHLK-SKGLSVTIRKNLGRDIDGACGQLAV 341
>gi|320353873|ref|YP_004195212.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
DSM 2032]
gi|320122375|gb|ADW17921.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
DSM 2032]
Length = 371
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/251 (43%), Positives = 156/251 (62%), Gaps = 20/251 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ--------LVHASRLSNI 80
P R+TLC+SSQVGC MGC+FC TG MGF NL++ EIV Q L H L +
Sbjct: 101 PEEDRNTLCVSSQVGCAMGCSFCLTGAMGFCRNLTTAEIVNQVCAVRDWTLAHDKGL--L 158
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPG 137
N+VFMGMGEPL N+ L++A+ I+T GL F S +RITVST G+V + + +
Sbjct: 159 TNIVFMGMGEPLANFDNLLDAIAILTEQRGLDF--SNRRITVSTCGLVPQMRRLGEE-TD 215
Query: 138 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQ 197
+NLAVSLHA +VR ++MP + +P+ +L+ + Y++ +++I EY +L G+ND +
Sbjct: 216 VNLAVSLHAVNDEVRSRLMPVNKRYPIAELIEVCRTYRQKRRKRIMFEYTLLQGINDSDA 275
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG-SYNIRTTVRKQM 256
A QL +LL +NL+ NP GS S +++ +++V FQ+ILR Y + +R
Sbjct: 276 DAVQLAELLREVPCKINLLAVNP-GSGSAYQSPGEERVLCFQRILRDRGYTV--FIRTSR 332
Query: 257 GQDISGACGQL 267
G+DIS ACGQL
Sbjct: 333 GEDISAACGQL 343
>gi|271501574|ref|YP_003334600.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
gi|270345129|gb|ACZ77894.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
Length = 392
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 118 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 177
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 178 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 236
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + +E + A++ Y S Q ++ +EY+MLD +ND
Sbjct: 237 ALAISLHAPTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDG 296
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 297 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 354
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 355 RGDDIDAACGQLAGEVVDR 373
>gi|404448301|ref|ZP_11013294.1| ribosomal RNA large subunit methyltransferase N [Indibacter
alkaliphilus LW1]
gi|403765922|gb|EJZ26797.1| ribosomal RNA large subunit methyltransferase N [Indibacter
alkaliphilus LW1]
Length = 352
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 146/246 (59%), Gaps = 9/246 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN------IRN 82
P R T C+SSQVGC + CNFCAT + NL+ EI +Q+V + + N
Sbjct: 99 PTTKRITACVSSQVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIKEEAETYFQRPLTN 158
Query: 83 VVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
+VFMGMGEPL NY +++A+ +I + ++P+RIT+STVGI I K D NLA
Sbjct: 159 IVFMGMGEPLLNYNNVIDAIDKITSPEGLGMAPRRITLSTVGIPKMIKKMADDEVRFNLA 218
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
VSLH+ + + R ++MP PLE L ALK + + +++K+ EY++ DG+ND+E+HA
Sbjct: 219 VSLHSAIDETRSRLMPINDVNPLEDLAEALKYWYQKTKRKVTYEYVIWDGINDDERHAKA 278
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L K + VN+I +NPI +FR +S + V + +IL S I VRK GQDI
Sbjct: 279 LAKFCKIIPSKVNIIQYNPIDE-GEFRQASQEAVDMYVRILE-SNGIIAKVRKSRGQDID 336
Query: 262 GACGQL 267
ACGQL
Sbjct: 337 AACGQL 342
>gi|297568774|ref|YP_003690118.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2]
gi|296924689|gb|ADH85499.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2]
Length = 354
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/253 (43%), Positives = 152/253 (60%), Gaps = 15/253 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----------- 77
P R TLC+SSQVGC MGC FC T TMGFK NL + EIV Q+ A R
Sbjct: 99 PEDDRYTLCVSSQVGCAMGCRFCLTATMGFKRNLEAAEIVGQVDAALRWLLARPGATGEK 158
Query: 78 SNIRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLP 136
+ I N+VFMGMGEPL N+ L+ A++I M S +RITVST GIV + + +P
Sbjct: 159 TRINNLVFMGMGEPLLNFDHLLRAIKILMEQRGHDFSGRRITVSTCGIVPKMKELGEQVP 218
Query: 137 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEE 196
+NLAVSLHA D+R Q+MP + +PLE+L+ A +EY +++I IEY+M+ +ND
Sbjct: 219 -VNLAVSLHAADNDIRDQLMPINKKYPLEQLLRACREYPLPPRRRIMIEYVMIKDLNDSV 277
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
A L K L + +N++P+N S ++ ++ V +F++ILR + + T +R+
Sbjct: 278 AQARLLVKKLHGIRCKINILPYNE-NPDSPYQAPDEETVENFRQILRRAGHT-TLLRQSR 335
Query: 257 GQDISGACGQLVV 269
G DIS ACGQL V
Sbjct: 336 GADISAACGQLAV 348
>gi|386815051|ref|ZP_10102269.1| 23S rRNA m(2)A-2503 methyltransferase [Thiothrix nivea DSM 5205]
gi|386419627|gb|EIJ33462.1| 23S rRNA m(2)A-2503 methyltransferase [Thiothrix nivea DSM 5205]
Length = 409
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 160/259 (61%), Gaps = 17/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLC+SSQVGC + C FC+T GF NL++ EI+ QL A R I
Sbjct: 142 PEDDRGTLCVSSQVGCALDCTFCSTARQGFNRNLTTAEIIGQLWVAKRTLQADPGGARVI 201
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL N+ + A+ +M + +S +R+T+ST G++ A+ + +D ++
Sbjct: 202 SNVVMMGMGEPLLNFDNVANALMLMMDDNAYGLSKRRVTLSTSGVLPALARL-ADTMDVS 260
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEE 196
LAVSLHAP +VR Q++P R +P+++LM +++ + + I EY+ML+G+ND++
Sbjct: 261 LAVSLHAPNNEVRNQLVPLNRKYPIQELMAVCRQFLAKKTTERNHITWEYVMLEGINDKD 320
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS-YNIRTTVRKQ 255
+HAHQL KLL+ +NLIPFNP ++++ SS++++ F+ IL + Y + T RK
Sbjct: 321 EHAHQLVKLLKGIPSKINLIPFNPFPE-TRYKRSSNNRIHRFRDILAAAGYTVIT--RKT 377
Query: 256 MGQDISGACGQLVVNLPDK 274
G+DI ACGQL + DK
Sbjct: 378 RGEDIDAACGQLAGQVNDK 396
>gi|444920988|ref|ZP_21240826.1| Ribosomal RNA large subunit methyltransferase N [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444507724|gb|ELV07898.1| Ribosomal RNA large subunit methyltransferase N [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 371
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/268 (40%), Positives = 161/268 (60%), Gaps = 19/268 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----------- 77
P R TLC+SSQVGC + C+FC+T GF NLS+ EIV Q++ A RL
Sbjct: 104 PEDDRGTLCVSSQVGCALECSFCSTARQGFNRNLSTAEIVGQVMLAKRLLGEYEGDVQQS 163
Query: 78 --SNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSD 134
+ NVV MGMGEPL N+ + +A+ IM F +S +R+T+ST G+V A+ + +
Sbjct: 164 QNRRVTNVVLMGMGEPLLNFTNVTQAIDIMLNDYGFGLSKRRVTLSTSGVVPALYRLK-E 222
Query: 135 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGV 192
+ ++LA+SLHAP +R +++P + +PL +L+ A K Y + ++ +KI EY+ML V
Sbjct: 223 VSDVSLAISLHAPYDTLRNELVPINKKYPLAELLEACKAYITESSAYRKITWEYVMLKDV 282
Query: 193 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
ND E+ A L KL++ VNLIPFNP + S + SS ++++ F++IL+ + TTV
Sbjct: 283 NDREEDAFALAKLIKDIPGKVNLIPFNPFPN-SGYECSSMNRINRFREILQRQ-GVVTTV 340
Query: 253 RKQMGQDISGACGQLVVNLPDKISAKST 280
RK G+DI ACGQL + D+ T
Sbjct: 341 RKTRGEDIDAACGQLAGRVNDRTKRTKT 368
>gi|429462724|ref|YP_007184187.1| 23S rRNA (adenine2503-C2)-methyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811522|ref|YP_007447977.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338238|gb|AFZ82661.1| 23S rRNA (adenine2503-C2)-methyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776680|gb|AGF47679.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 373
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 159/258 (61%), Gaps = 22/258 (8%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLCISSQ GC + C+FC TG GF NL++ EI+ QL A + N
Sbjct: 101 PDSNRNTLCISSQAGCAVNCSFCFTGQQGFNRNLTTSEIIGQLWWAQKNINNDFFSGNLD 160
Query: 80 --------IRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINK 130
I N+V MGMGEPL NY+ ++ A+R+M + +S ++IT+ST GIV I+K
Sbjct: 161 KSIINSPKITNIVMMGMGEPLLNYSQVIPALRLMMDENSYALSKRKITLSTSGIVPMIDK 220
Query: 131 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIML 189
+D P ++LA+SLHAP ++R +++P + +PL++LM + + Y + + I EY ML
Sbjct: 221 LVNDCP-VSLAISLHAPNDELRDKLIPINKKYPLQELMKSCRNYVSYAPRDFITFEYCML 279
Query: 190 DGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 249
D +ND ++HA +L +L+ T + +NLIPFN + S + S+ +++ SF KIL S I
Sbjct: 280 DNINDSDKHAFELIELVRTIKCKINLIPFNSFPN-SNLKRSTQNRILSFVKIL-NSQGIV 337
Query: 250 TTVRKQMGQDISGACGQL 267
TTVRK G DI+ ACGQL
Sbjct: 338 TTVRKTRGDDINAACGQL 355
>gi|205829861|sp|A9BMV6.2|RLMN_DELAS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 374
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 157/266 (59%), Gaps = 20/266 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN---- 79
P R TLC+SSQ GC +GC FC+TG GF NLS+GEI+ QL +A RL
Sbjct: 96 PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHSLRKRLGTGGER 155
Query: 80 -IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPG 137
I NVV MGMGEPL NY ALV A+R M + +S +R+TVST G+V I++ D
Sbjct: 156 VISNVVMMGMGEPLQNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDC-A 214
Query: 138 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEE 196
+ +AVSLHAP ++R ++P R +P+ +L++A + Y + + + I EY MLDGVND+
Sbjct: 215 VAMAVSLHAPNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQP 274
Query: 197 QHAHQLGKLLET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251
+HA QL +L+ NLIPFNP + R+ + +V+ F +L + I TT
Sbjct: 275 EHARQLIELVRARGDGRSWCKFNLIPFNPFPASGLLRSPA-ARVTEFASLLSNA-GIVTT 332
Query: 252 VRKQMGQDISGACGQLVVNLPDKISA 277
VRK G DI ACGQL ++ D+ A
Sbjct: 333 VRKTRGDDIDAACGQLAGDVKDRTRA 358
>gi|392980211|ref|YP_006478799.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. dissolvens SDM]
gi|392326144|gb|AFM61097.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. dissolvens SDM]
Length = 388
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|365850692|ref|ZP_09391154.1| 23S rRNA m2A2503 methyltransferase [Yokenella regensburgei ATCC
43003]
gi|364566893|gb|EHM44571.1| 23S rRNA m2A2503 methyltransferase [Yokenella regensburgei ATCC
43003]
Length = 388
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGTRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|311278552|ref|YP_003940783.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
gi|308747747|gb|ADO47499.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
Length = 388
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L +Y T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-NYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|440750150|ref|ZP_20929394.1| Ribosomal RNA large subunit methyltransferase N [Mariniradius
saccharolyticus AK6]
gi|436481191|gb|ELP37372.1| Ribosomal RNA large subunit methyltransferase N [Mariniradius
saccharolyticus AK6]
Length = 355
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 147/246 (59%), Gaps = 9/246 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV----HASRLSN--IRN 82
P R T C+SSQVGC + CNFCAT + NL+ EI +Q+V A N + N
Sbjct: 100 PTSKRITACVSSQVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIKEEAETYFNRPLTN 159
Query: 83 VVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
+VFMGMGEPL NYA +VEA+ +I + ++ +RIT+STVGI I K D NLA
Sbjct: 160 IVFMGMGEPLLNYANVVEAIDKITSPEGLGMAARRITLSTVGIPKMIKKMADDEVKFNLA 219
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
+SLH+ + + R ++MP + PLE L ALK + + +++K+ EY++ DG+ND+E HA
Sbjct: 220 ISLHSAINETRSRLMPINDSNPLEDLAEALKYWYQKTKRKVTYEYVIWDGINDDESHAKA 279
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L K + VN+I +NPI +FR +S + V + +IL + I VRK GQDI
Sbjct: 280 LAKFCKIIPSKVNIIQYNPIDE-GEFRQASQEAVDMYVRILEQN-GIVAKVRKSRGQDID 337
Query: 262 GACGQL 267
ACGQL
Sbjct: 338 AACGQL 343
>gi|294786945|ref|ZP_06752199.1| radical SAM enzyme, Cfr family [Parascardovia denticolens F0305]
gi|315226582|ref|ZP_07868370.1| cfr family radical SAM enzyme [Parascardovia denticolens DSM 10105
= JCM 12538]
gi|294485778|gb|EFG33412.1| radical SAM enzyme, Cfr family [Parascardovia denticolens F0305]
gi|315120714|gb|EFT83846.1| cfr family radical SAM enzyme [Parascardovia denticolens DSM 10105
= JCM 12538]
Length = 404
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 165/281 (58%), Gaps = 31/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+M+Y S R+TLCISSQVGC M C FCATG +G N+S+
Sbjct: 121 DGSRIESVLMKYPS--------------RTTLCISSQVGCGMACPFCATGQLGLTRNMSA 166
Query: 65 GEIVEQLVHAS------RL---SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQV 112
GEI+EQ+ +AS RL + + NVVFMGMGE L NY A+++A+R ++ +P F +
Sbjct: 167 GEILEQVRYASAQARDGRLGEPTRLSNVVFMGMGEALGNYRAMMKAIRRISAMPPEGFGI 226
Query: 113 SPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 172
S + IT+STVGIV I + + + LAVSLHAP ++R +++P + F ++++A
Sbjct: 227 SARNITISTVGIVPGIRRLMGEGIPVRLAVSLHAPDDELRDELVPMNKRFNTTQVLDAAH 286
Query: 173 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRT 229
+Y + +++ IEY ++ G+ND+ HA L K L + VN IP NPI S++
Sbjct: 287 DYYLATHRRVSIEYALMKGINDQAVHARLLAKRLNRYGDNWAHVNPIPLNPIEG-SKWTA 345
Query: 230 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
S + + F IL + I T+R G DI+GACGQL
Sbjct: 346 SKPEDEARFLDILHEA-GITATLRDTRGSDINGACGQLAAK 385
>gi|285808444|gb|ADC35970.1| conserved hypothetical protein [uncultured bacterium 98]
Length = 358
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 104/247 (42%), Positives = 149/247 (60%), Gaps = 7/247 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ---LVHASRLSN-IRNVV 84
P P T CIS+QVGC M C FC TG MG NL++GEI Q L A+ L++ N+V
Sbjct: 98 PDTPAMTFCISTQVGCAMACGFCLTGKMGLVRNLTAGEIAGQVRVLAAATGLADQAFNIV 157
Query: 85 FMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL+NY ++A+R++ + +SP+R+T+STVGIV + + + NLAVS
Sbjct: 158 LMGMGEPLHNYDNTMKALRMLHSEHGLSISPRRVTLSTVGIVPGLERLAREPLMPNLAVS 217
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 203
LHA + R ++P R +PL ++ A + + + +I EY++LDGVND + A +L
Sbjct: 218 LHATTDEQRSALVPPNRKYPLADIIAACQRFPLKQRSRITFEYVLLDGVNDSPEDARRLV 277
Query: 204 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 263
+LL + VNLIP NP + F SD +V F +IL ++ +VRK GQDI A
Sbjct: 278 RLLAGIRAKVNLIPLNPAPGIP-FERPSDARVDRFAQIL-ADRHLTVSVRKSRGQDIRAA 335
Query: 264 CGQLVVN 270
CGQL+V+
Sbjct: 336 CGQLIVD 342
>gi|269120621|ref|YP_003308798.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386]
gi|268614499|gb|ACZ08867.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386]
Length = 357
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 146/243 (60%), Gaps = 8/243 (3%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-----IRNVVFMG 87
R TLC+SSQ GC +GC FCAT TM F+ NL EI+ Q + + N + NVVFMG
Sbjct: 112 RYTLCVSSQAGCALGCEFCATATMKFEKNLDISEILMQFYYVQKYLNQKGNKLDNVVFMG 171
Query: 88 MGEPLNNYAALVEAVRIMTGLPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
MGEP N+ +++++ I+ + Q KR TVST G+V I KF +NLAVSLH+
Sbjct: 172 MGEPFLNFDNVMDSIDILNSIDGQNCSKRNFTVSTSGLVPYIEKFTDLDSQVNLAVSLHS 231
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
+ R +IMP + +PL+ L +L YQK ++++I EYI++D N + A +L K L
Sbjct: 232 VNDEYRSKIMPVNKKYPLKDLKKSLLAYQKKTKKRISFEYILIDDFNCSKNDAFELTKFL 291
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
F +VNLIP+NP+ S + T S + F +IL + NI T+R+ GQDI+ ACGQ
Sbjct: 292 REFSCLVNLIPYNPVAGKS-YATPSKTRQQEFYRILLKN-NINATLRETKGQDIAAACGQ 349
Query: 267 LVV 269
L V
Sbjct: 350 LKV 352
>gi|423141156|ref|ZP_17128794.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
gi|379053710|gb|EHY71601.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
Length = 388
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDAIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TDHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|332880555|ref|ZP_08448229.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|357046079|ref|ZP_09107709.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella clara YIT 11840]
gi|332681543|gb|EGJ54466.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|355531085|gb|EHH00488.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella clara YIT 11840]
Length = 344
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 152/263 (57%), Gaps = 18/263 (6%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
GG+VE V + P G R+TLC+SSQVGC+M C FC TG GF L++
Sbjct: 89 GGYVETVYI--------------PDGDRATLCVSSQVGCRMNCRFCMTGKQGFSGQLTAA 134
Query: 66 EIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGI 124
+I+ QL + NVVFMG GEPL+N ++ A I+T + SPKRITVSTVG+
Sbjct: 135 DILNQLYSLPERDTLTNVVFMGQGEPLDNLDNVLRATEILTADYGYAWSPKRITVSTVGL 194
Query: 125 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 184
+ +F D +LAVSLH P D R +MPA ++ L +++ L+EY Q+++
Sbjct: 195 RKGLKRF-LDESECHLAVSLHNPFADQRALLMPAENSYGLREIVALLREYDFTHQRRLSF 253
Query: 185 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 244
EY M +GVND HA +L +LL+ + +NLI F+P+ V + +S++ + F+ L G
Sbjct: 254 EYTMFEGVNDTPAHAKELLRLLDGLECRMNLIRFHPVPGVD-LKGTSEEGMLRFRDYLTG 312
Query: 245 SYNIRTTVRKQMGQDISGACGQL 267
+ + +T+R GQDI ACG L
Sbjct: 313 -HGLFSTIRASRGQDIFAACGLL 334
>gi|374335136|ref|YP_005091823.1| ribosomal RNA large subunit methyltransferase N [Oceanimonas sp.
GK1]
gi|372984823|gb|AEY01073.1| ribosomal RNA large subunit methyltransferase N [Oceanimonas sp.
GK1]
Length = 372
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 157/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVH-ASRLSNIR------ 81
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ ASR+ +R
Sbjct: 98 PDGDRATLCVSSQVGCALDCKFCSTAQQGFNRNLKVSEIIGQVWRAASRVGFVRDSGRKP 157
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N +V A+R+M F +S +R+T+ST G+V A++K +D+ +
Sbjct: 158 ITNVVMMGMGEPLLNLNNVVPAMRLMLEDYGFGLSKRRVTLSTSGVVPALDKL-ADMIDV 216
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LAVSLHAP +R +IMP + + +L+ +++ Y S K+ IEY++LD VND+
Sbjct: 217 ALAVSLHAPNDQLRSEIMPINDKYNIAELIASIRRYLAVSNANHGKVTIEYVLLDHVNDD 276
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
QHAH+L +LL+ +NLIPFNP + + S+ ++ F K+L Y T+RK
Sbjct: 277 MQHAHELAELLKDLPCKINLIPFNPFPG-NPYGKPSNSRIDRFNKVLM-QYGNTVTIRKT 334
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 335 RGDDIDAACGQLVGDVIDR 353
>gi|34763242|ref|ZP_00144204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27887095|gb|EAA24204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 358
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 157/273 (57%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++GG +E V++R+ S K R R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDGGTIETVLLRHKDS------KNRE--IRNTLCVSSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++ +S
Sbjct: 138 NLSVSEILNQIYIVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDKFYNYLKNIRKVNVTLRQEKGSDIDGACGQL 349
>gi|54307955|ref|YP_128975.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
profundum SS9]
gi|81615490|sp|Q6LU52.1|RLMN_PHOPR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|46912381|emb|CAG19173.1| Conserved hypothetical protein [Photobacterium profundum SS9]
Length = 373
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR------- 81
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A++ I
Sbjct: 99 PDGDRATLCVSSQVGCALACTFCSTAQQGFNRNLRVSEIIGQVWRAAKEIGIEKDTGRRP 158
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N L+ A+ IM + F +S +R+TVST G+V +++ ++ +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDIGFGLSKRRVTVSTSGVVSGLDQMTGNI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 195
LA+SLHAP ++R QIMP F + + ++ Y Q N+ + ++ +EYI+LD VND+
Sbjct: 218 ALAISLHAPTDELRSQIMPINDRFNIATFLESVSRYIEQSNANRGRVTVEYILLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA QL LL+ +NLIPFNP S +R S+ ++ F K L Y+ TVRK
Sbjct: 278 MEHARQLAVLLKDTPAKINLIPFNPYPG-SPYRKPSNSRIDRFMKTLM-EYDFTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|340753859|ref|ZP_08690632.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
2_1_31]
gi|229423409|gb|EEO38456.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
2_1_31]
Length = 358
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 155/273 (56%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDKGTIETVLLRHRDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQGGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R ++ N+VFMGMGEPL N L A+ I++ +S
Sbjct: 138 NLSVSEILNQVYTVERRLRKKDESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST GIV I K + + LAVSLH+ + D R QI+P + FPLE L L EY
Sbjct: 198 RKITISTSGIVSGIEKILLEKIPIELAVSLHSAINDKRDQIIPINKNFPLEDLSAVLVEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISEADANALADFIHQFDHVVNLIPYNEVEGVEHKRPSM-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDRFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|83589757|ref|YP_429766.1| hypothetical protein Moth_0906 [Moorella thermoacetica ATCC 39073]
gi|123752954|sp|Q2RK16.1|RLMN_MOOTA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|83572671|gb|ABC19223.1| 23S rRNA m(2)A-2503 methyltransferase [Moorella thermoacetica ATCC
39073]
Length = 354
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 155/271 (57%), Gaps = 21/271 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+M Y + G R+T C+SSQVGC MGC+FCATG G + NL++
Sbjct: 89 DGNSIECVLMIY-----------KDGRRRNTACLSSQVGCAMGCSFCATGQGGLQRNLTA 137
Query: 65 GEIVEQ-------LVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
EI+ Q L + I N+VFMGMGEPLNNY A+++ VRI + +S +R
Sbjct: 138 SEIILQALALGAELAEGEGGNRISNIVFMGMGEPLNNYEAVMKGVRIFEDPSGWGISHRR 197
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
IT+ST GIV I + + P L LAVSLHA ++R ++MP R +PLE+L+ A + Y +
Sbjct: 198 ITLSTCGIVPGIERLAREKPPLELAVSLHAVTNELRDKLMPINRRYPLEELIPACRRYAE 257
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
+ +++ EY ++ GVND + A L +LL VN+IP NP+ S F+
Sbjct: 258 ITGRRVTFEYALIAGVNDRREDARGLSRLLRDMLAFVNIIPLNPVAG-SGFKGVPPAAAR 316
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+F +L+ + +R GQDI+ ACGQL
Sbjct: 317 AFVALLQ-EAGLEAAIRDSRGQDIAAACGQL 346
>gi|56461137|ref|YP_156418.1| ribosomal RNA large subunit methyltransferase N [Idiomarina
loihiensis L2TR]
gi|81363032|sp|Q5QYC0.1|RLMN_IDILO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|56180147|gb|AAV82869.1| Predicted Fe-S-cluster redox enzyme [Idiomarina loihiensis L2TR]
Length = 378
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 154/258 (59%), Gaps = 15/258 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R+TLC+SSQVGC + C FC+TG GF NLS EI+ Q+ ++L
Sbjct: 102 PEGDRATLCVSSQVGCALECTFCSTGAQGFNRNLSVAEIIGQVWRVNQLLGAYGKTGIKP 161
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N +V A+ +M L F +S +R+T+ST G+V A+ K + +
Sbjct: 162 VTNVVMMGMGEPLLNLNNVVPAMELMLDDLGFGLSKRRVTLSTSGVVPALEKLRERIDVM 221
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEE 196
LA+SLHAP ++R +I+P + + +E+ + + + Y Q +Q+K+ +EY+MLD VND
Sbjct: 222 -LAISLHAPDDELRNEIVPINKKYNIEEFLASSRRYVEQSKAQRKVTVEYVMLDHVNDST 280
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
AH L K L+ +NLIPFNP S + SS+ ++ F K+L Y + VRK
Sbjct: 281 DQAHALAKTLKDTPSKINLIPFNPFPG-SDYGRSSNSRIDRFAKVLM-EYGLTVMVRKTR 338
Query: 257 GQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 339 GDDIDAACGQLVGDVIDR 356
>gi|420237038|ref|ZP_14741511.1| ribosomal RNA large subunit methyltransferase N [Parascardovia
denticolens IPLA 20019]
gi|391879734|gb|EIT88238.1| ribosomal RNA large subunit methyltransferase N [Parascardovia
denticolens IPLA 20019]
Length = 404
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 165/281 (58%), Gaps = 31/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+M+Y S R+TLCISSQVGC M C FCATG +G N+S+
Sbjct: 121 DGSRIESVLMKYPS--------------RTTLCISSQVGCGMACPFCATGQLGLTRNMSA 166
Query: 65 GEIVEQLVHAS------RL---SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQV 112
GEI+EQ+ +AS RL + + NVVFMGMGE L NY A+++A+R ++ +P F +
Sbjct: 167 GEILEQVRYASAQARDGRLGEPTRLSNVVFMGMGEALGNYRAMMKAIRRISAMPPEGFGI 226
Query: 113 SPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 172
S + IT+STVGIV I + + + LAVSLHAP ++R +++P + F ++++A
Sbjct: 227 SARNITISTVGIVPGIRRLMGEGIPVRLAVSLHAPDDELRDELVPMNKRFNTTQVLDAAH 286
Query: 173 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRT 229
+Y + +++ IEY ++ G+ND+ HA L K L + VN IP NPI S++
Sbjct: 287 DYYLATHRRVSIEYALMKGINDQAVHARLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTA 345
Query: 230 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
S + + F IL + I T+R G DI+GACGQL
Sbjct: 346 SKPEDEARFLDILHEA-GITATLRDTRGSDINGACGQLAAK 385
>gi|390946616|ref|YP_006410376.1| 23S rRNA m(2)A-2503 methyltransferase [Alistipes finegoldii DSM
17242]
gi|390423185|gb|AFL77691.1| 23S rRNA m(2)A-2503 methyltransferase [Alistipes finegoldii DSM
17242]
Length = 368
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 146/240 (60%), Gaps = 4/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P G R+TLC+SSQ GC+MGC FCATG G + +L++ EI+ Q+V ++ NVVFMGM
Sbjct: 123 PDGERATLCVSSQAGCRMGCKFCATGRQGLQHSLTAPEILNQIVSLPERDSLTNVVFMGM 182
Query: 89 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEPL+N ++ A+ IMT F SP RIT+ST G+ + +F D ++LAVSLH P
Sbjct: 183 GEPLDNTDNVLRALEIMTSEWGFGWSPTRITLSTAGVAPELQRF-LDATKVHLAVSLHNP 241
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
+ R IMP RA+P+ ++ L+ Y Q+++ EYI++ G+ND +H +L +LL+
Sbjct: 242 FHEERAAIMPVERAWPIAEVAAILRRYDFTHQRRVSFEYIVMSGLNDSPRHIRELCRLLD 301
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +NLI F+ I F + D+ + F+ L I+TT+R G+DI ACG L
Sbjct: 302 GIKCRINLIRFHKIPGSPYF-SPDDEAMIRFRDTLTAK-GIQTTIRASRGEDIQAACGLL 359
>gi|221066031|ref|ZP_03542136.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
gi|220711054|gb|EED66422.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
Length = 373
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 113/265 (42%), Positives = 157/265 (59%), Gaps = 19/265 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN---- 79
P R TLC+SSQ GC +GC FC+TG GF NL +GEI+ QL +A R
Sbjct: 96 PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLDTGEILAQLWYAEHSLRKRFGTEDRI 155
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY+ALV A+R+M + +S +R+TVST G+V +++ D +
Sbjct: 156 ISNVVMMGMGEPLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDC-AV 214
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P R +P+ +L++A + Y + + + I EY MLDGVND+ +
Sbjct: 215 ALAVSLHAPNDPLRDNLVPLNRKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPE 274
Query: 198 HAHQLGKLLET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL +L+ NLIPFNP + R+S+ +V+ F +L + I TTV
Sbjct: 275 HARQLIELVRARGDGKSWCKFNLIPFNPFPASGLLRSSA-ARVTEFATMLSNA-GIVTTV 332
Query: 253 RKQMGQDISGACGQLVVNLPDKISA 277
RK G DI ACGQL ++ D+ A
Sbjct: 333 RKTRGDDIDAACGQLAGDVKDRTRA 357
>gi|120554052|ref|YP_958403.1| radical SAM protein [Marinobacter aquaeolei VT8]
gi|387814569|ref|YP_005430055.1| Fe-S protein [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|205829787|sp|A1TZP7.1|RLMN_MARAV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120323901|gb|ABM18216.1| 23S rRNA m(2)A-2503 methyltransferase [Marinobacter aquaeolei VT8]
gi|381339585|emb|CCG95632.1| putative Fe-S containing enzyme (yfgB) [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 369
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 165/285 (57%), Gaps = 28/285 (9%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
M NG VE V++ P G R TLC+SSQ+GC + C FC+TG GF
Sbjct: 87 MRMDNGNSVETVLI--------------PDGERGTLCVSSQIGCSLDCTFCSTGKRGFNR 132
Query: 61 NLSSGEIVEQLVHASRL--------SNIRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQ 111
NL++ EI+ Q+ A R I NVV MGMGEPL N+ +V+A+ + M L +
Sbjct: 133 NLTAAEIIGQVWVARRAFMPFDPNDRPITNVVMMGMGEPLLNFENVVDAMNLMMEDLAYG 192
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S +R+T+ST G+V A+++ ++ ++LA+SLHAP ++R Q++P + +P+ +L+ A
Sbjct: 193 ISKRRVTLSTSGVVPALDRL-GEVTDVSLAISLHAPNDELRNQLVPLNKKYPIAELLAAT 251
Query: 172 KEYQKN--SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 229
+ Y ++K IEY +++GVND+ +HA +L LL+ +NLIPFNP S FR
Sbjct: 252 RRYLSRLPDKRKATIEYTVIEGVNDQPEHARELVVLLKGLPCKINLIPFNPFPE-SDFRR 310
Query: 230 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
S + FQ +L + + TT+R G DI ACGQLV + D+
Sbjct: 311 PSMNATRRFQTVLNEAGYV-TTIRTTRGDDIDAACGQLVGRVEDR 354
>gi|255292044|dbj|BAH90525.1| conserved hypothetical protein [uncultured bacterium]
gi|255292512|dbj|BAH89627.1| radical SAM enzyme [uncultured bacterium]
gi|255293032|dbj|BAH90127.1| radical SAM enzyme [uncultured bacterium]
Length = 364
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 151/247 (61%), Gaps = 15/247 (6%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--------SNIRNVV 84
R TLC+SSQVGC++ C+FC T GF NL EIV Q+ ASRL I NVV
Sbjct: 105 RGTLCVSSQVGCQLNCSFCQTARQGFNRNLGVDEIVGQIWAASRLLPPHPAREKPITNVV 164
Query: 85 FMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
FMGMGEPL N+ +V A+R+M L + +S +R+TVST G+V I++ + P + LAVS
Sbjct: 165 FMGMGEPLLNFDNVVAAIRVMLDDLAYGLSWRRVTVSTSGVVPMIDRLREECP-VALAVS 223
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQL 202
LHAP +R +++P R +P++ L++A + Y Q ++I EY +L GVND A L
Sbjct: 224 LHAPDDALRAELVPLNRRYPIDVLLDACRRYVAGDQRRRITFEYTLLAGVNDHPGQAKAL 283
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ-KILRGSYNIRTTVRKQMGQDIS 261
KLL VNLIP+NP+ + + TS V+ F+ ++LR + + TVRK G DI+
Sbjct: 284 AKLLARVPSKVNLIPYNPVAGLP-YATSPPQAVAQFRDELLR--HGLVATVRKTRGDDIA 340
Query: 262 GACGQLV 268
GACGQL
Sbjct: 341 GACGQLA 347
>gi|218706020|ref|YP_002413539.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UMN026]
gi|293405958|ref|ZP_06649950.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
gi|298381759|ref|ZP_06991358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FVEC1302]
gi|300898379|ref|ZP_07116722.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
gi|417587516|ref|ZP_12238285.1| hypothetical protein ECSTECC16502_3159 [Escherichia coli
STEC_C165-02]
gi|419933201|ref|ZP_14450469.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
576-1]
gi|432354433|ref|ZP_19597704.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE2]
gi|432402782|ref|ZP_19645534.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE26]
gi|432427048|ref|ZP_19669547.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE181]
gi|432461514|ref|ZP_19703661.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE204]
gi|432476738|ref|ZP_19718735.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE208]
gi|432518616|ref|ZP_19755802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE228]
gi|432538739|ref|ZP_19775639.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE235]
gi|432632278|ref|ZP_19868203.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE80]
gi|432641994|ref|ZP_19877826.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE83]
gi|432666943|ref|ZP_19902522.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE116]
gi|432775597|ref|ZP_20009866.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE54]
gi|432887494|ref|ZP_20101547.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE158]
gi|432913734|ref|ZP_20119367.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE190]
gi|433019580|ref|ZP_20207780.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE105]
gi|433054161|ref|ZP_20241335.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE122]
gi|433068807|ref|ZP_20255593.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE128]
gi|433159562|ref|ZP_20344397.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE177]
gi|433179352|ref|ZP_20363747.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE82]
gi|254807179|sp|B7N6A5.1|RLMN_ECOLU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|218433117|emb|CAR14014.1| putative Fe-S containing enzyme [Escherichia coli UMN026]
gi|291428166|gb|EFF01193.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
gi|298279201|gb|EFI20715.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FVEC1302]
gi|300357919|gb|EFJ73789.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
gi|345335546|gb|EGW67984.1| hypothetical protein ECSTECC16502_3159 [Escherichia coli
STEC_C165-02]
gi|388414231|gb|EIL74197.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
576-1]
gi|430874840|gb|ELB98392.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE2]
gi|430925253|gb|ELC45926.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE26]
gi|430954747|gb|ELC73602.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE181]
gi|430988335|gb|ELD04829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE204]
gi|431004556|gb|ELD19770.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE208]
gi|431050410|gb|ELD60160.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE228]
gi|431068619|gb|ELD77093.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE235]
gi|431169856|gb|ELE70071.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE80]
gi|431181257|gb|ELE81128.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE83]
gi|431199769|gb|ELE98496.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE116]
gi|431317601|gb|ELG05379.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE54]
gi|431415843|gb|ELG98338.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE158]
gi|431438999|gb|ELH20368.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE190]
gi|431529888|gb|ELI06579.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE105]
gi|431569590|gb|ELI42532.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE122]
gi|431582690|gb|ELI54702.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE128]
gi|431677054|gb|ELJ43136.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE177]
gi|431700235|gb|ELJ65217.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE82]
Length = 384
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRCYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|387773831|ref|ZP_10129116.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parahaemolyticus
HK385]
gi|386903652|gb|EIJ68459.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parahaemolyticus
HK385]
Length = 386
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 112 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNFGVTGVRP 171
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM + +S +R+T+ST G+V A++ D +
Sbjct: 172 ITNVVMMGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDALR-DKIDV 230
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E L++++ Y + S K+ IEY+MLD VNDE
Sbjct: 231 ALAISLHAPNDEIRDEIVPINKKYNMEMLIDSVNRYLEVSNANHGKVTIEYVMLDHVNDE 290
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HAHQL K+L+ +NLIP+NP + + SS+ +V FQK L Y T+RK
Sbjct: 291 VDHAHQLAKVLKNTPCKINLIPWNPFPE-APYAKSSNSRVDRFQKALM-EYGFTVTIRKT 348
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 349 RGDDIDAACGQLAGDVIDR 367
>gi|407012251|gb|EKE26656.1| hypothetical protein ACD_4C00205G0001, partial [uncultured
bacterium (gcode 4)]
Length = 247
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 146/249 (58%), Gaps = 17/249 (6%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMG 87
R+TLC+SSQ GC M C+FCAT + F+ NL EIV+Q++ AS + N+RN+V+MG
Sbjct: 1 RNTLCVSSQAGCPMACSFCATWKLWFQRNLEFYEIVDQIMAASLILNKEQKNLRNIVYMG 60
Query: 88 MGEPLNNYAALVEAVRIMTGLP-----FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 142
M EP NY E V+I + F S +R+T+ST IV I KF D P +LA+
Sbjct: 61 MWEPFLNY----ENVKISINIACKQEKFDFSNRRVTISTCWIVPGIKKFGDDFPQTSLAI 116
Query: 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 202
SLHAP ++R IMP +PL LM AL EY + +K+F EYIM+ VND ++A L
Sbjct: 117 SLHAPSDELRRSIMPVNINYPLNLLMPALDEYVAKTNKKVFYEYIMIAWVNDSLENAKSL 176
Query: 203 GKLLETFQVVVNLIPFNPI-GSV-SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
+LL VN IP+N GS S+ + +S +++ FQ IL + +T+R M DI
Sbjct: 177 AELLRWKLAHVNFIPYNVWEGSADSEMKPTSKNRIVEFQNIL-NDVGVASTIRHTMWDDI 235
Query: 261 SGACGQLVV 269
ACGQL +
Sbjct: 236 DAACGQLAL 244
>gi|330996801|ref|ZP_08320673.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT
11841]
gi|329572523|gb|EGG54174.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT
11841]
Length = 348
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/276 (38%), Positives = 156/276 (56%), Gaps = 18/276 (6%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
GG+VE V + P G R+TLC+SSQVGC+M C FC TG GF L++
Sbjct: 89 GGYVETVYI--------------PDGDRATLCVSSQVGCRMNCRFCMTGKQGFSGQLTAA 134
Query: 66 EIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGI 124
+I+ QL + NVVFMG GEPL+N ++ A I+T + SPKRITVSTVG+
Sbjct: 135 DILNQLYSLPERDTLTNVVFMGQGEPLDNLDNVLRATEILTADYGYAWSPKRITVSTVGL 194
Query: 125 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 184
+ +F D +LAVSLH P D R ++MPA ++ L++++ L+EY Q+++
Sbjct: 195 RKGLKRF-LDESECHLAVSLHNPFADQRARLMPAENSYGLQEIVALLREYDFTHQRRLSF 253
Query: 185 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 244
EY M +GVND HA +L +LL + +NLI F+P+ V + +S++ + F+ L G
Sbjct: 254 EYTMFEGVNDTLAHAKELLRLLGGVECRMNLIRFHPVPGVD-LKGTSEEGMLRFRDYLTG 312
Query: 245 SYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 280
+ + +T+R GQDI ACG L + K T
Sbjct: 313 -HGLFSTIRASRGQDIFAACGLLSTAKQQGVELKKT 347
>gi|260494797|ref|ZP_05814927.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
3_1_33]
gi|260197959|gb|EEW95476.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
3_1_33]
Length = 358
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 155/273 (56%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++ G +E V++R+ S K R+TLCISSQVGC + C+FCATG G+
Sbjct: 86 FELEDKGTIETVLLRHKDSKNK--------EIRNTLCISSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R + N+VFMGMGEPL N L +A+ I++ +S
Sbjct: 138 NLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDKFYNYLKNVRRVNVTLRQEKGSDIDGACGQL 349
>gi|71908601|ref|YP_286188.1| hypothetical protein Daro_2988 [Dechloromonas aromatica RCB]
gi|123760407|sp|Q47BR3.1|RLMN_DECAR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71848222|gb|AAZ47718.1| 23S rRNA m(2)A-2503 methyltransferase [Dechloromonas aromatica RCB]
Length = 364
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 118/284 (41%), Positives = 158/284 (55%), Gaps = 27/284 (9%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+D NG VE V + P R TLCIS+Q GC + C FC+TG GF
Sbjct: 82 IDVGNGNAVETVFI--------------PEDDRGTLCISTQAGCALDCAFCSTGKQGFNR 127
Query: 61 NLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQ 111
NLS EI+ QL A+ I NVV MGMGEPL N+ V A+++M +
Sbjct: 128 NLSVAEIIGQLWQANHALGAVHGDERVISNVVLMGMGEPLANFENSVAALKLMLDDNAYG 187
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S +RITVST G+V +++ + P + LAVSLHAP +R Q++P + +PL++LM A
Sbjct: 188 LSRRRITVSTSGLVPVMDRLGDECP-VALAVSLHAPNDKLRDQLVPINQKYPLKELMAAC 246
Query: 172 KEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTS 230
+ Y +K + I EYIMLDG+ND + HA +L L+++ NLIPFNP S FR S
Sbjct: 247 QRYLEKAPRDFITFEYIMLDGINDTDAHARELLALVKSVHCKFNLIPFNPFPG-SPFRRS 305
Query: 231 SDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
++V F IL + I TT RK G DI ACGQL + DK
Sbjct: 306 PAERVRHFADILMQA-GIVTTTRKTRGDDIDAACGQLAGQVQDK 348
>gi|257465082|ref|ZP_05629453.1| hypothetical protein AM202_01135 [Actinobacillus minor 202]
gi|257450742|gb|EEV24785.1| hypothetical protein AM202_01135 [Actinobacillus minor 202]
Length = 386
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 112 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNFGVTGVRP 171
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM + +S +R+T+ST G+V A++ + +
Sbjct: 172 ITNVVMMGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKI-DV 230
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E L+N++ +Y + S K+ IEY+MLD +NDE
Sbjct: 231 ALAISLHAPNDEIRDEIVPINKKYNIEMLINSVNKYLEVSNANHGKVTIEYVMLDHINDE 290
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HAHQL K+L+ +NLIP+NP + + SS+ ++ FQK L Y T+RK
Sbjct: 291 VDHAHQLAKVLKNTPCKINLIPWNPFPE-APYAKSSNSRIDRFQKALM-EYGFTVTIRKT 348
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 349 RGDDIDAACGQLAGDVIDR 367
>gi|383784040|ref|YP_005468608.1| radical SAM family protein [Leptospirillum ferrooxidans C2-3]
gi|383082951|dbj|BAM06478.1| putative radical SAM family protein [Leptospirillum ferrooxidans
C2-3]
Length = 372
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 113/277 (40%), Positives = 158/277 (57%), Gaps = 25/277 (9%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR------------ 76
P G R+TLCISSQVGC +GC FC T MG NL+ GEIV Q++ A++
Sbjct: 95 PRGDRATLCISSQVGCGIGCKFCRTAEMGLIRNLTMGEIVGQVIMANKILKENPIKDGST 154
Query: 77 --------LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHA 127
L+ + ++VFMGMGEPL N ++ ++R +T +SP+RITVST G+
Sbjct: 155 SNLEDQPLLNRVNHIVFMGMGEPLANLDQVINSIRTLTSSDGLGMSPRRITVSTSGLPSK 214
Query: 128 INKF-HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 186
I + S +P +NLAVSL A R ++MP R +P+ +++A+++ +Q++ EY
Sbjct: 215 IIELGQSGIP-VNLAVSLTAADDPTREKLMPINRHYPIRAILDAIRQLPLKKRQRVTFEY 273
Query: 187 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 246
++L GVND + A +L +LL F+ VNLIPFNP S F + S D V FQKIL
Sbjct: 274 VLLSGVNDRPEDAKKLARLLAPFKSKVNLIPFNPYEG-SPFVSPSKDDVLLFQKILLEKM 332
Query: 247 NIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 283
+ TT+R+ G DI GACGQL I S PV
Sbjct: 333 -VATTIRQSRGDDILGACGQLAWEKKTAIKETSWNPV 368
>gi|87311004|ref|ZP_01093129.1| hypothetical protein DSM3645_15540 [Blastopirellula marina DSM
3645]
gi|87286294|gb|EAQ78203.1| hypothetical protein DSM3645_15540 [Blastopirellula marina DSM
3645]
Length = 361
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 157/271 (57%), Gaps = 22/271 (8%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+VI+R + R+ LC+SSQVGC C+FCATG MG +LS+
Sbjct: 92 DGLLLESVILRVATG-------------RTALCVSSQVGCAANCDFCATGKMGIARSLSA 138
Query: 65 GEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRIT 118
+I++Q+V A++L +RN+VFMGMGEP +N AA+ E + ++++ F SP+R
Sbjct: 139 PQILDQVVQANQLLKPEGRKVRNIVFMGMGEPFHNTAAVHETLEKLVSPHGFDQSPRRTL 198
Query: 119 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178
VSTVG+ A+ F P +NLA+SLH+ +Q R +I+P A F L++L AL +
Sbjct: 199 VSTVGLPSAMIAFARKFPKVNLALSLHSAIQSRRTEIIPLAAKFDLKELRAALDQVAAVQ 258
Query: 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 238
QQ I IEY+ML G+ND + L L V +NLIP+N + + +S + +F
Sbjct: 259 QQSIMIEYLMLRGINDGPEDRAALADYLRGLPVHINLIPYNRVDAAPHLEGTSKEDREAF 318
Query: 239 QKILRGS-YNIRTTVRKQMGQDISGACGQLV 268
LRG Y + T+R +G D+ ACGQLV
Sbjct: 319 GAALRGEGYTV--TIRYSLGADVDAACGQLV 347
>gi|251788745|ref|YP_003003466.1| ribosomal RNA large subunit methyltransferase N [Dickeya zeae
Ech1591]
gi|247537366|gb|ACT05987.1| radical SAM enzyme, Cfr family [Dickeya zeae Ech1591]
Length = 392
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 118 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 177
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 178 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 236
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + +E + A++ Y S Q ++ +EY+MLD +ND
Sbjct: 237 ALAISLHAPTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDG 296
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 297 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 354
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 355 RGDDIDAACGQLAGEVVDR 373
>gi|182415989|ref|YP_001821055.1| radical SAM protein [Opitutus terrae PB90-1]
gi|205829654|sp|B2A0B9.1|RLMN3_OPITP RecName: Full=Probable dual-specificity RNA methyltransferase RlmN
3; AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase 3; AltName:
Full=23S rRNA m2A2503 methyltransferase 3; AltName:
Full=Ribosomal RNA large subunit methyltransferase N 3;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase
3; AltName: Full=tRNA m2A37 methyltransferase 3
gi|177843203|gb|ACB77455.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1]
Length = 374
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 163/283 (57%), Gaps = 27/283 (9%)
Query: 1 MDCQNGGFVEAVIMRY-DSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFK 59
++ ++G +E VI+R +G+ + R T+CIS+QVGC MGC FCA+G G K
Sbjct: 87 LELRDGSLIETVIIRAPQEGVGQDHS-------RKTICISTQVGCAMGCVFCASGLAGLK 139
Query: 60 SNLSSGEIVEQLVHAS------------RLSNIRNVVFMGMGEPLNNYAALVEAVRIMT- 106
+LS+GEIV QL+ L++ N+V MGMGEPL NY AL+ A+ I+
Sbjct: 140 RDLSAGEIVAQLLQVCYREDALTPRAHMELASFDNIVVMGMGEPLANYDALIRALTILNA 199
Query: 107 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 164
GL F +RITVST G+V I + + G LA+SLH +VR +IMP +AFPL
Sbjct: 200 DWGLGF--GARRITVSTSGLVPKILQLADEPLGFRLAISLHGATDEVREKIMPVNKAFPL 257
Query: 165 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 224
KL+ A+K + + + I +E+I++DGVND + A +L + VNLIP+N + +
Sbjct: 258 AKLLPAVKAFSEKHGRMITLEFILIDGVNDSLEQAEKLRDIALDLHAHVNLIPYNTVEGL 317
Query: 225 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ ++ S + F +LR + + T+R++ G DI ACGQL
Sbjct: 318 A-WKRPSITRQERFADVLR-ARRVSVTLRREKGHDIDAACGQL 358
>gi|417950305|ref|ZP_12593429.1| ribosomal RNA large subunit methyltransferase N [Vibrio splendidus
ATCC 33789]
gi|342806784|gb|EGU41996.1| ribosomal RNA large subunit methyltransferase N [Vibrio splendidus
ATCC 33789]
Length = 380
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P G R+TLC+SSQVGC + C FC+T GF NL EIV Q+ ASR
Sbjct: 99 PDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIWRASREIGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ ++ IM L F +S +R+TVST G+V +++ +D +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLMPSLEIMLDDLGFALSKRRVTVSTSGVVSGLDQM-TDNIDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R QIMP + ++ + +++ Y +S + K+ +EY++LD VND+
Sbjct: 218 ALAISLHAPNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HA +L +L++ +NLIPFNP S ++ S+ ++ FQK L Y+ TVRK
Sbjct: 278 MDHARELAELMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-EYDYTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|197336065|ref|YP_002155383.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
MJ11]
gi|254807222|sp|B5FAW9.1|RLMN_VIBFM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|197317555|gb|ACH67002.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11]
Length = 372
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P G R+TLC+SSQVGC + C FC+T GF NL EIV Q+ A+R
Sbjct: 99 PDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTGKI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R QIMP + ++ + +++ Y +S + ++ +EY++LD VND+
Sbjct: 218 ALAISLHAPTDELRSQIMPINDRWDIDAFLASVRRYIASSNANRGRVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HA QL +LL+ +NLIPFNP S ++ S+ ++ F K L Y+ T+RK
Sbjct: 278 MDHARQLAELLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFMKTLM-EYDYTVTIRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|347820223|ref|ZP_08873657.1| radical SAM enzyme, Cfr family protein [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 370
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 167/290 (57%), Gaps = 30/290 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D ++G VEAV + P R TLC+SSQ GC +GC FC+TG GF
Sbjct: 82 FDVRDGNAVEAVFI--------------PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSR 127
Query: 61 NLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPF 110
NL++GEIV QL A R I N+V MGMGEPL NY+AL+ A+R+M +
Sbjct: 128 NLTAGEIVAQLWFAEHSLRKRFGTAERVITNLVMMGMGEPLQNYSALIPALRVMLDDHGY 187
Query: 111 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+S +R+TVST G+V +++ D P + LAVSLHAP +R +++P R +P+ +L+ A
Sbjct: 188 GLSRRRVTVSTSGVVPMLDRLAQDCP-VALAVSLHAPNDPLRDKLVPLNRKYPIHELLQA 246
Query: 171 LKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQV--VVNLIPFNPIGSVSQF 227
K Y ++ + I EY MLDGVND+ A +L L+ ++ NLIPFNP +
Sbjct: 247 CKRYLVHAPRDFITFEYCMLDGVNDQLAQARELIDLVRGAEIRCKFNLIPFNPFPASGLL 306
Query: 228 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 277
R S+ +++ +F K+L + I TTVR+ G DI ACGQL ++ D+ A
Sbjct: 307 R-STQNQLLAFAKVLSDA-GIVTTVRRTRGDDIDAACGQLAGDVRDRTRA 354
>gi|213621172|ref|ZP_03373955.1| hypothetical protein SentesTyp_28162 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 315
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/252 (42%), Positives = 150/252 (59%), Gaps = 16/252 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 64 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 123
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 124 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 182
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 183 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 242
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 243 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 300
Query: 256 MGQDISGACGQL 267
G DI ACGQL
Sbjct: 301 RGDDIDAACGQL 312
>gi|340000243|ref|YP_004731127.1| hypothetical protein SBG_2301 [Salmonella bongori NCTC 12419]
gi|339513605|emb|CCC31359.1| conserved hypothetical protein [Salmonella bongori NCTC 12419]
Length = 388
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + ++ + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDAIRDEIVPINKKYNIDTFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|71065245|ref|YP_263972.1| hypothetical protein Psyc_0679 [Psychrobacter arcticus 273-4]
gi|123748144|sp|Q4FTX0.1|RLMN_PSYA2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71038230|gb|AAZ18538.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter arcticus
273-4]
Length = 409
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 174/308 (56%), Gaps = 37/308 (12%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G VE V++ D S K NG R TLCISSQVGC + C+FC+TG GF+ +L++
Sbjct: 113 GSLVETVLIPADDS--KLNG-------RKTLCISSQVGCALDCSFCSTGKQGFERDLTAA 163
Query: 66 EIVEQLV------------------HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM-T 106
EI+ QL H+ +N+ NVV MGMGEPL NY +V ++ +M +
Sbjct: 164 EILGQLWVANASYMSDENDSLENIDHSLWENNVTNVVMMGMGEPLLNYRPVVSSMELMLS 223
Query: 107 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 166
+ +S +R+T+ST G+V + + +L + LA+SLHAP ++R +++P + +PLE+
Sbjct: 224 DHAYGLSKRRVTLSTSGVVPKMYELAKEL-DVALAISLHAPNDELRNELVPINKKYPLEQ 282
Query: 167 LMNALKEY----QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 222
LM A + Y ++ + IEY+MLDGVND +HA QL LL +NLIPFNP
Sbjct: 283 LMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNEHAEQLVALLGDLPSKINLIPFNPFP 342
Query: 223 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI--SAKST 280
+ + SS++++ +F IL + T+R+ G DI ACGQLV + D+ SA
Sbjct: 343 H-ANYDKSSNNRIHAFSNILSEA-GFVCTIRQTRGDDIDAACGQLVGQVADRTRRSAAWQ 400
Query: 281 PPVTDIED 288
+ D E+
Sbjct: 401 QSIKDREN 408
>gi|260221248|emb|CBA29622.1| Ribosomal RNA large subunit methyltransferase N [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 466
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 160/287 (55%), Gaps = 30/287 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D NG VE V + P R TLCISSQ GC +GC FC+TG GF
Sbjct: 82 FDVGNGDAVETVFI--------------PESDRGTLCISSQAGCAVGCRFCSTGHQGFSR 127
Query: 61 NLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPF 110
NL + EI+ QL A I NVV MGMGEPL NY ALV A+++M +
Sbjct: 128 NLKTWEILAQLWFAEHFLRSHLGVSDRVISNVVMMGMGEPLQNYVALVPALKVMLDDHGY 187
Query: 111 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+S +R+TVST G+V +++ D P + LAVSLHAP +R ++P R +PL++LM A
Sbjct: 188 GLSRRRVTVSTSGVVPMMDRLGEDCP-VALAVSLHAPEDSLRDNLVPLNRKYPLKELMEA 246
Query: 171 LKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQV--VVNLIPFNPIGSVSQF 227
+ Y ++ + I EY MLDGVND +HA L +L++ V NLIPFNP +
Sbjct: 247 CRRYLAHAPRDFITFEYCMLDGVNDHPEHAKLLLQLVKESGVPCKFNLIPFNPFPASGLL 306
Query: 228 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
R SS++ V +F +IL + TT+RK G DI ACGQL ++ D+
Sbjct: 307 R-SSNNAVQAFARILVDG-GLVTTIRKTRGDDIDAACGQLAGDVKDR 351
>gi|59711233|ref|YP_204009.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
ES114]
gi|423685341|ref|ZP_17660149.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
SR5]
gi|75354452|sp|Q5E775.1|RLMN_VIBF1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|59479334|gb|AAW85121.1| predicted enzyme [Vibrio fischeri ES114]
gi|371495253|gb|EHN70849.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
SR5]
Length = 372
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P G R+TLC+SSQVGC + C FC+T GF NL EIV Q+ A+R
Sbjct: 99 PDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTGKI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R QIMP + ++ + +++ Y +S + ++ +EY++LD VND+
Sbjct: 218 ALAISLHAPTDELRSQIMPINDRWDIDAFLASVRRYIASSNANRGRVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HA QL +LL+ +NLIPFNP S ++ S+ ++ F K L Y+ T+RK
Sbjct: 278 MDHARQLAELLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFMKTLM-EYDYTVTIRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|219847237|ref|YP_002461670.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus
aggregans DSM 9485]
gi|219541496|gb|ACL23234.1| radical SAM enzyme, Cfr family [Chloroflexus aggregans DSM 9485]
Length = 361
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 113/280 (40%), Positives = 159/280 (56%), Gaps = 33/280 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE V+M Y RST+C+S+Q GC MGC FCATG +G NLSS
Sbjct: 87 DGAVVETVLMVYPD--------------RSTVCVSTQAGCGMGCVFCATGRLGLLRNLSS 132
Query: 65 GEIVEQLVHAS---RLSN-------IRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVS 113
GEIV Q + AS R N + N+VFMGMGEP NY +AV R+ F +
Sbjct: 133 GEIVAQAIWASQELRAMNAAGPSGRVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLG 192
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
+ +TVSTVG+V I + ++ +NLA+SLHAP +R ++MP R +P+ +LM A ++
Sbjct: 193 ARSMTVSTVGLVKGIERLANERLPINLAISLHAPDDTLRSELMPVNRRYPIAELMAATRQ 252
Query: 174 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET------FQVVVNLIPFNPIGSVSQF 227
Y +++++ EY++L G ND A L +LL V VNLIP+NP+
Sbjct: 253 YIAKTRRRVSFEYVLLQGKNDHPHQAIALARLLRREAPPGPILVHVNLIPWNPVPGTPLG 312
Query: 228 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
R S ++V++FQ+IL Y I TVR + G +I+ ACGQL
Sbjct: 313 R-SEWERVNAFQQIL-TDYGIPCTVRVERGVEIAAACGQL 350
>gi|397689423|ref|YP_006526677.1| Ribosomal RNA large subunit methyltransferase N [Melioribacter
roseus P3M]
gi|395810915|gb|AFN73664.1| Ribosomal RNA large subunit methyltransferase N [Melioribacter
roseus P3M]
Length = 353
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 108/251 (43%), Positives = 146/251 (58%), Gaps = 11/251 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ-LVHASRL--SNIRNVVF 85
P G R+TLC+S+QVGC + C FCATG MGFK NLS+GEI +Q L+ AS I N+VF
Sbjct: 101 PDGDRNTLCLSTQVGCPLDCKFCATGLMGFKRNLSAGEITDQYLLIASDYGKEKITNIVF 160
Query: 86 MGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
MGMGEPL NY + A+ I T L +S RITVST GI I + + LA SL
Sbjct: 161 MGMGEPLTNYRNTLTAIEIFTHELSKSLSRNRITVSTAGIPDRIRELADSGLRVKLAFSL 220
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
H+ D+R +IMP + +PLEK + ALK Y ++ +I EY ML G+ND ++ +L K
Sbjct: 221 HSAFDDIRNKIMPINKKYPLEKNIEALKYYAAKTKTRITFEYTMLRGINDRDEDIKELAK 280
Query: 205 LLETFQVVVNLIPFNPI------GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
+ +N+IPFN I G ++ + +++ +F LR NI +R G
Sbjct: 281 ICSRIPSKINIIPFNSIEHMNPGGISAELEPTPYEEIINFADKLR-QRNISVFIRDTQGD 339
Query: 259 DISGACGQLVV 269
DI+ ACGQL V
Sbjct: 340 DIAAACGQLAV 350
>gi|386834961|ref|YP_006240278.1| radical SAM enzyme, Cfr family [Pasteurella multocida subsp.
multocida str. 3480]
gi|385201664|gb|AFI46519.1| radical SAM enzyme, Cfr family [Pasteurella multocida subsp.
multocida str. 3480]
Length = 394
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 120 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 179
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ +
Sbjct: 180 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDV 238
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ LM+++ Y S K+ IEY+MLD VND
Sbjct: 239 ALAISLHAPNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDG 298
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y VRK
Sbjct: 299 VEHAHQLAQVLKNIPCKINLIPWNPFPE-APYAKSSNSRIDRFQKTLM-EYGFTVIVRKT 356
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 357 RGDDIDAACGQLAGDVIDR 375
>gi|417300312|ref|ZP_12087531.1| radical SAM domain protein [Rhodopirellula baltica WH47]
gi|327543394|gb|EGF29819.1| radical SAM domain protein [Rhodopirellula baltica WH47]
Length = 379
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 164/293 (55%), Gaps = 22/293 (7%)
Query: 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSN 61
+ ++G +E+VI+R + R+TLC+SSQ+GC C+FCATG MG N
Sbjct: 81 ETESGMLIESVILRIATG-------------RTTLCVSSQIGCAAACDFCATGKMGIAKN 127
Query: 62 LSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPK 115
L++ EI++Q+V A ++ + N+VFMGMGEPL+N + EA+ ++T F SP
Sbjct: 128 LATEEILDQVVQAGQILRGEDRRLSNIVFMGMGEPLHNEVNVTEAIELLTASDHFARSPS 187
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
+ VSTVG+ + + P LNLA+SLH+ Q R +I+P + L +L + + E Q
Sbjct: 188 TVLVSTVGVPAGMLRLAKRFPNLNLALSLHSADQTTREKIIPLGKKASLTQLHDTILEIQ 247
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235
++ IEY+ML VND + A +L + +V VNLIP+N I + SS +
Sbjct: 248 TIQDREFMIEYLMLRDVNDSAKDADRLIDWIGDLRVHVNLIPYNTIEASPHLHASSRPVI 307
Query: 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQLV--VNLPDKISAKSTPPVTDI 286
SF IL+ S ++TTVR +G DI ACGQL+ N + A+ T +D+
Sbjct: 308 ESFADILKAS-GLKTTVRYSLGNDIEAACGQLIRQENRQRAMQARRTESESDL 359
>gi|422941346|ref|ZP_16967816.1| cfr family radical SAM enzyme, partial [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
gi|339889541|gb|EGQ78830.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
Length = 349
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 155/273 (56%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDKGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R + N+VFMGMGEPL N L +A+ I++ +S
Sbjct: 138 NLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLSKALSIISNKNGINISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|323342528|ref|ZP_08082760.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC
19414]
gi|336066671|ref|YP_004561529.1| ribosomal RNA large subunit methyltransferase RlmN [Erysipelothrix
rhusiopathiae str. Fujisawa]
gi|322463640|gb|EFY08834.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC
19414]
gi|334296617|dbj|BAK32488.1| ribosomal RNA large subunit methyltransferase RlmN [Erysipelothrix
rhusiopathiae str. Fujisawa]
Length = 347
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 161/280 (57%), Gaps = 26/280 (9%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
++C +G +E V+M++D ++C++SQVGC MGC FCA+G + K
Sbjct: 81 LECSDGALIETVMMKHDYGY--------------SVCVTSQVGCAMGCKFCASGLLKKKR 126
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQV 112
NL+S E+V Q++ R + ++V MG+GEP +NY ++ +RI+ GL +
Sbjct: 127 NLTSAEVVNQIMFVQRHLDEQDKRVSHIVVMGIGEPFDNYDNIMRFIRIVNHDHGLG--I 184
Query: 113 SPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 172
+ IT+ST G+ I KF + +NLA+SLHAP +R +IMP + F LEKL +ALK
Sbjct: 185 GARHITISTSGVAPVIKKFADEQTQVNLAISLHAPNDTLRSEIMPVNKMFNLEKLFDALK 244
Query: 173 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 232
YQ S +++ EYI++D VND+ A +L L+ VNLIP+N + + FR +
Sbjct: 245 YYQSKSNRRLTFEYILIDNVNDQIAQAKELVALIRGMNAYVNLIPYNEVDE-NPFRQTKP 303
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 272
++ + F L+ + I+ T+R++ G +I ACGQL N+
Sbjct: 304 EQAAKFYDYLKRN-GIQCTIRREKGSEIDAACGQLRANVE 342
>gi|330830071|ref|YP_004393023.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
B565]
gi|406676649|ref|ZP_11083834.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC35]
gi|423206308|ref|ZP_17192864.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC34]
gi|423209225|ref|ZP_17195779.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER397]
gi|328805207|gb|AEB50406.1| Ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
B565]
gi|404617083|gb|EKB14019.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER397]
gi|404621860|gb|EKB18725.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC34]
gi|404624963|gb|EKB21780.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC35]
Length = 367
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 152/254 (59%), Gaps = 11/254 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----IRNVV 84
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R+ I NVV
Sbjct: 98 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAARVVGGKRPITNVV 157
Query: 85 FMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N A +V A+R+ M F +S +R+T+ST G+V A++K D + LA+S
Sbjct: 158 MMGMGEPLLNLANVVPAMRLMMDDYGFGISKRRVTISTSGVVPALDKL-GDQIDVALAIS 216
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAH 200
LHAP +R +IMP + +E+ + ++ Y S ++ +EY++LD +ND+ QHAH
Sbjct: 217 LHAPNDKLRSEIMPINDKYNIEEFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAH 276
Query: 201 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
+L K+L+ +NLIPFNP + + S+ ++ F K+L Y VRK G DI
Sbjct: 277 ELAKVLKDTPSKINLIPFNPFPG-NPYGKPSNSRIDRFSKVLM-EYGFTVIVRKTRGDDI 334
Query: 261 SGACGQLVVNLPDK 274
ACGQLV ++ D+
Sbjct: 335 DAACGQLVGDVIDR 348
>gi|358450412|ref|ZP_09160875.1| radical SAM protein [Marinobacter manganoxydans MnI7-9]
gi|385331231|ref|YP_005885182.1| hypothetical protein HP15_1490 [Marinobacter adhaerens HP15]
gi|311694381|gb|ADP97254.1| conserved hypothetical protein [Marinobacter adhaerens HP15]
gi|357225343|gb|EHJ03845.1| radical SAM protein [Marinobacter manganoxydans MnI7-9]
Length = 370
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/286 (37%), Positives = 166/286 (58%), Gaps = 29/286 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
M NG VE V++ P G R TLC+SSQ+GC + C FC+TG GF
Sbjct: 87 MRMDNGNSVETVLI--------------PDGERGTLCVSSQIGCSLDCTFCSTGKRGFNR 132
Query: 61 NLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAALVEAVRI-MTGLPF 110
NL++ E++ Q+ A + I NVV MGMGEPL N+ +V+A+ + M L +
Sbjct: 133 NLTAAEVIGQVWVARKAFMPFEPGPDRPITNVVMMGMGEPLLNFDNVVDAMNLMMEDLAY 192
Query: 111 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+S +R+T+ST G+V A+++ S++ ++LA+SLHAP ++R +++P + +P+ +L+ A
Sbjct: 193 GISKRRVTLSTSGVVPALDRL-SEVTDVSLAISLHAPNDELRNKLVPLNKKYPISELLAA 251
Query: 171 LKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 228
K Y + ++K IEY +++G+ND+ +HA +L LL +NLIPFNP S FR
Sbjct: 252 TKRYFARLPDKRKATIEYTVIEGMNDQPEHARELAVLLRDLPCKINLIPFNPFPE-SDFR 310
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
S + FQ +L + I TT+R G DI ACGQLV + D+
Sbjct: 311 RPSMNATRRFQNVLNEAGYI-TTIRTTRGDDIDAACGQLVGRVEDR 355
>gi|423200200|ref|ZP_17186780.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER39]
gi|404620171|gb|EKB17070.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER39]
Length = 367
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 152/254 (59%), Gaps = 11/254 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----IRNVV 84
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R+ I NVV
Sbjct: 98 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAARVVGGKRPITNVV 157
Query: 85 FMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N A +V A+R+ M F +S +R+T+ST G+V A++K D + LA+S
Sbjct: 158 MMGMGEPLLNLANVVPAMRLMMDDYGFGISKRRVTISTSGVVPALDKL-GDQIDVALAIS 216
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAH 200
LHAP +R +IMP + +E+ + ++ Y S ++ +EY++LD +ND+ QHAH
Sbjct: 217 LHAPNDKLRSEIMPINDKYNIEEFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAH 276
Query: 201 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
+L K+L+ +NLIPFNP + + S+ ++ F K+L Y VRK G DI
Sbjct: 277 ELAKVLKDTPSKINLIPFNPFPG-NPYGKPSNSRIDRFSKVLM-EYGFTVIVRKTRGDDI 334
Query: 261 SGACGQLVVNLPDK 274
ACGQLV ++ D+
Sbjct: 335 DAACGQLVGDVIDR 348
>gi|350552153|ref|ZP_08921359.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodospira
sibirica ATCC 700588]
gi|349795018|gb|EGZ48824.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodospira
sibirica ATCC 700588]
Length = 390
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/252 (42%), Positives = 151/252 (59%), Gaps = 16/252 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLC+S+QVGC + C+FCAT GF NLSS EI+ QL ASR+ I
Sbjct: 113 PEQGRGTLCVSTQVGCALQCSFCATARQGFNRNLSSAEIIAQLWLASRVLQPEGGQSRVI 172
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL N+ A V A+ +M + +S +R+TVST G+V AI++ L ++
Sbjct: 173 SNVVLMGMGEPLLNFEASVAAMELMLHDHAYGLSKRRVTVSTAGVVPAIDRLRDTL-DVS 231
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQ 197
LA+SLHAP +R Q++P R +P+ +L+ A K Y + + Q+I +EY +++GVND Q
Sbjct: 232 LAISLHAPDDALRDQLVPLNRKYPIRELLAACKRYVREGRHHQRITVEYALINGVNDAPQ 291
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQM 256
A L +LL +NLIPFNP S + ++ V+ FQ +L + Y T +R+
Sbjct: 292 QAQALARLLRDLPCKLNLIPFNPFAQ-SPYAAPTEAAVARFQDVLTQAGYT--TVIRRTR 348
Query: 257 GQDISGACGQLV 268
G +I ACGQLV
Sbjct: 349 GDEIDAACGQLV 360
>gi|349574484|ref|ZP_08886432.1| cfr family radical SAM enzyme [Neisseria shayeganii 871]
gi|348013953|gb|EGY52849.1| cfr family radical SAM enzyme [Neisseria shayeganii 871]
Length = 363
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 112/261 (42%), Positives = 154/261 (59%), Gaps = 13/261 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NLS+ EI+ QL A++ I
Sbjct: 96 PEAERGTLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIGQLWWANKALGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL NY +V A+ IM + +S +R+TVST G+V +++ D+P +
Sbjct: 156 SNVVMMGMGEPLANYDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA VR +I+P + +PL +LM A + Y K + + EY+MLDGVND +H
Sbjct: 215 LAVSLHASNDAVRNEIVPLNKKYPLTELMAACRRYLAKAPRDFVTFEYVMLDGVNDRPEH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L L+ NLIPFNP S ++ SS++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELLTLVRDVPCKFNLIPFNPFPH-SGYQRSSNENIRIFRDILQQA-GLVVTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDKISAKS 279
DI ACGQL + DK ++
Sbjct: 333 DIDAACGQLAGQVRDKTRRQA 353
>gi|336400464|ref|ZP_08581243.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
21_1A]
gi|336162652|gb|EGN65616.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
21_1A]
Length = 358
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 155/273 (56%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++ G +E V++R+ S K R+TLCISSQVGC + C+FCATG G+
Sbjct: 86 FELEDKGTIETVLLRHKDSKNK--------EIRNTLCISSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++ +S
Sbjct: 138 NLSVSEILNQIYTIERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGINISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|300113467|ref|YP_003760042.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
gi|299539404|gb|ADJ27721.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
Length = 372
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/258 (43%), Positives = 157/258 (60%), Gaps = 17/258 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C+FCATG GF NL+ EI+ QL A+++ I
Sbjct: 99 PEEDRGTLCISSQVGCILDCSFCATGKQGFNRNLAISEIIGQLWLANKILGRTPKGERII 158
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL N+ +V A+ +M + +S +R+T+ST G+V AI++ + P ++
Sbjct: 159 TNVVMMGMGEPLANFNNVVAAMNLMLDDFSYGLSWRRVTLSTAGMVPAIDRLRAVCP-VS 217
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQH 198
LAVSLHAP +R +++P + +PLE L++A + Y +++ + EY+ML VND H
Sbjct: 218 LAVSLHAPTDKLRDELVPLNKKYPLEDLLSACRRYVAGDRRRAVTFEYVMLADVNDSFSH 277
Query: 199 AHQLGKLLETFQVVVNLIPFNPI-GSVSQFRTSSDDKVSSF-QKILRGSYNIRTTVRKQM 256
A L +LL+ VNLIPFNP GSV +R S + + F +K+LRG I T RK
Sbjct: 278 ARALLRLLQGLPAKVNLIPFNPFPGSV--YRRSDAETIDRFREKLLRGG--IMTVTRKTR 333
Query: 257 GQDISGACGQLVVNLPDK 274
G DI+ ACGQL + D+
Sbjct: 334 GDDIAAACGQLAGQVQDR 351
>gi|417852143|ref|ZP_12497780.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida str. Anand1_poultry]
gi|338217648|gb|EGP03496.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida str. Anand1_poultry]
Length = 394
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 120 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 179
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ +
Sbjct: 180 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDV 238
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LAVSLHAP ++R +I+P + + ++ LM+++ Y S K+ IEY+MLD VND
Sbjct: 239 ALAVSLHAPNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDG 298
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y VRK
Sbjct: 299 VEHAHQLAQVLKNTPCKINLIPWNPFPE-APYAKSSNSRIDRFQKTLM-EYGFTVIVRKT 356
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 357 RGDDIDAACGQLAGDVIDR 375
>gi|294056045|ref|YP_003549703.1| Cfr family radical SAM protein [Coraliomargarita akajimensis DSM
45221]
gi|293615378|gb|ADE55533.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM
45221]
Length = 351
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 147/248 (59%), Gaps = 10/248 (4%)
Query: 28 RPGGP-RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------SNI 80
R G P R T C+SSQVGC MGC FCATG MGF LS+GEIV Q +H R +
Sbjct: 98 RMGFPGRFTACLSSQVGCAMGCVFCATGQMGFSRQLSAGEIVAQALHVERRLREDFGERL 157
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
RN+V MGMGEPL+N+ L++A+ I+T + P R+ +STVG V I K +
Sbjct: 158 RNIVMMGMGEPLHNFEPLMDALDILTDTRGLNIGPARVAISTVGYVPGIRKLMQHAKRYS 217
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHA 199
LAVSLH + R +++P + +PL +L+ +EY + + ++F + ++ GVND + HA
Sbjct: 218 LAVSLHGASDEERGKLIPINKRWPLAELLETCREYSQVKKARVFFAWTLIKGVNDSDDHA 277
Query: 200 HQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 259
+L LL+ VNLIP NP S + +V +FQ+I++ + + +TVR++ G D
Sbjct: 278 QRLAALLQGMDAHVNLIPLNPTDDFSG-EAPEEARVRAFQEIIQAA-GLPSTVRQRRGID 335
Query: 260 ISGACGQL 267
++ CGQL
Sbjct: 336 VAAGCGQL 343
>gi|220905656|ref|YP_002480967.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425]
gi|219862267|gb|ACL42606.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425]
Length = 367
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 153/244 (62%), Gaps = 5/244 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFM 86
P R T+C+SSQVGC MGC+FCATG GF+ +L EIV+Q+ V A + NVVFM
Sbjct: 119 PSNRRLTVCVSSQVGCPMGCDFCATGKGGFRRHLDRHEIVDQVLTVQADFGQRVSNVVFM 178
Query: 87 GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
GMGEPL N A++EAVR + + + +T+STVGI I + + LAVSLHA
Sbjct: 179 GMGEPLLNLEAVLEAVRCLNQ-DVGIGQRFLTISTVGIPGQIRRLANHHLQATLAVSLHA 237
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
Q +R Q++P+AR +PLE L+ ++Y + + +++ EYI+L G+ND QHA +L + L
Sbjct: 238 SNQPLRAQLIPSARHYPLENLLQECRDYVQLTGRRVSFEYILLGGLNDLPQHALELAQHL 297
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
FQ VNLIP+NPI V ++ S ++ F ++L+ ++I ++R+ G D + ACGQ
Sbjct: 298 RGFQSHVNLIPYNPISEVD-YQRPSPQRMQHFLQLLQ-EHHIAASIRRSRGLDQNAACGQ 355
Query: 267 LVVN 270
L N
Sbjct: 356 LRAN 359
>gi|388456385|ref|ZP_10138680.1| Fe-S containing enzyme [Fluoribacter dumoffii Tex-KL]
Length = 375
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 156/259 (60%), Gaps = 14/259 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LS--------N 79
P R TLC+SSQVGC + C+FC+T GF NLS+ EI+ Q+ A R LS
Sbjct: 99 PEATRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAVRELSLEEGVHDKR 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ +V A+ IM + +S +R+T+ST G++ + + P +
Sbjct: 159 VTNVVMMGMGEPLLNFDNVVSAMSIMMDDFAYGLSKRRVTLSTSGVLPELQRLREVSP-V 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R +++P + +PL +LM K Y KN ++K+ EY+ML GVND+ +
Sbjct: 218 ALAVSLHAPNDELRNELVPINKKYPLSQLMALCKTYFKNEPRRKVTFEYVMLKGVNDQPE 277
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA+QL KLL VNLIPFNP ++ + SS + + +F+ L ++ I T RK G
Sbjct: 278 HANQLIKLLRNIPAKVNLIPFNPF-PMTHYERSSQEAIDAFRDKL-IAHGINTITRKTRG 335
Query: 258 QDISGACGQLVVNLPDKIS 276
DI ACGQL + D+ S
Sbjct: 336 DDIDAACGQLAGEVMDRTS 354
>gi|237745020|ref|ZP_04575501.1| radical SAM family enzyme [Fusobacterium sp. 7_1]
gi|229432249|gb|EEO42461.1| radical SAM family enzyme [Fusobacterium sp. 7_1]
Length = 358
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 155/273 (56%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++ G +E V++R+ S K R+TLCISSQVGC + C+FCATG G+
Sbjct: 86 FELEDKGTIETVLLRHKDSKNK--------EIRNTLCISSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++ +S
Sbjct: 138 NLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGINISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDKFYNYLKNVRRVNVTLRQEKGSDIDGACGQL 349
>gi|238752478|ref|ZP_04613954.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei
ATCC 43380]
gi|238709327|gb|EEQ01569.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei
ATCC 43380]
Length = 398
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PEGERATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKSTGTRP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|328951573|ref|YP_004368908.1| ribosomal RNA large subunit methyltransferase N [Marinithermus
hydrothermalis DSM 14884]
gi|328451897|gb|AEB12798.1| Ribosomal RNA large subunit methyltransferase N [Marinithermus
hydrothermalis DSM 14884]
Length = 353
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/250 (41%), Positives = 147/250 (58%), Gaps = 8/250 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS-----NIRNV 83
P R T+CISS VGC GC FCATG M F NL++ EI++QL+ A+ IRNV
Sbjct: 106 PYKDRRTICISSMVGCPAGCTFCATGQMRFGRNLTAPEILDQLLAAAYHQGISPREIRNV 165
Query: 84 VFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 142
V MGMGEPL N +++AVR M +SP+RIT+STVGI I + + G+ LA+
Sbjct: 166 VLMGMGEPLLNLTNVLKAVRRMIHKQALAMSPRRITLSTVGIPRGIYRLAEEDVGVKLAL 225
Query: 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 202
SLHAP + R +I+P A + +E++M+A++ Y + +++++ +EY +L GVND A L
Sbjct: 226 SLHAPDDETRRRIIPTAHRYAIEEIMDAVRHYYRRTKRRVTLEYTLLRGVNDHLWQAKML 285
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
K VNLIPFNP SS +++ F +L + I +VR G+D+
Sbjct: 286 AKHTRGLTAHVNLIPFNPWEGAPH-EGSSREQIRRFAAVLEAA-GIPVSVRWSRGRDVGA 343
Query: 263 ACGQLVVNLP 272
ACGQL + P
Sbjct: 344 ACGQLALRTP 353
>gi|222056625|ref|YP_002538987.1| ribosomal RNA large subunit methyltransferase N [Geobacter daltonii
FRC-32]
gi|221565914|gb|ACM21886.1| radical SAM enzyme, Cfr family [Geobacter daltonii FRC-32]
Length = 345
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 151/249 (60%), Gaps = 5/249 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLCISSQVGC MGC FC TGT NL++ EIV Q+ + +RN+VFMGM
Sbjct: 97 PDEDRNTLCISSQVGCAMGCEFCLTGTFRLTRNLTTAEIVNQVCAVKKNEPVRNIVFMGM 156
Query: 89 GEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEPL N ++ A+RI+T FQ S +++T+ST G+V + + + + +NLA+S++A
Sbjct: 157 GEPLANLENVIGALRILTDPDGFQFSTRKVTLSTAGLVPEMAELGAAVM-VNLAISMNAT 215
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
+VR +IMP R +PL++L+ A K + S++ I +EY+M+ GVND A +L +L+
Sbjct: 216 TDEVRDRIMPVNRRYPLKELLAACKAFPLPSRRWITVEYVMIKGVNDSLDDAKRLVRLIS 275
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
TF VNLIPFN RT + D + F K L + + R G DIS ACGQL
Sbjct: 276 TFPSKVNLIPFNE-HEGCDLRTPTQDSIDRFHKFLLDKH-VTVITRSSRGSDISAACGQL 333
Query: 268 VVNLPDKIS 276
L DK++
Sbjct: 334 KGRL-DKVT 341
>gi|289764771|ref|ZP_06524149.1| radical SAM family enzyme [Fusobacterium sp. D11]
gi|289716326|gb|EFD80338.1| radical SAM family enzyme [Fusobacterium sp. D11]
Length = 358
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 155/273 (56%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDKGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R + N+VFMGMGEPL N L +A+ I++ +S
Sbjct: 138 NLSVSEILNQIYTIERRLRKKGETLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|93005478|ref|YP_579915.1| hypothetical protein Pcryo_0648 [Psychrobacter cryohalolentis K5]
gi|123264706|sp|Q1QD22.1|RLMN_PSYCK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|92393156|gb|ABE74431.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter cryohalolentis
K5]
Length = 413
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 174/308 (56%), Gaps = 37/308 (12%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G VE V++ D S K NG R TLC+SSQVGC + C+FC+TG GF+ +L++
Sbjct: 117 GSLVETVLIPADDS--KLNG-------RKTLCVSSQVGCALDCSFCSTGKQGFERDLTAA 167
Query: 66 EIVEQLV------------------HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM-T 106
EI+ QL H+ +N+ NVV MGMGEPL NY +V ++ +M +
Sbjct: 168 EILGQLWVANASYMTDENDSLENVDHSLWENNVTNVVMMGMGEPLLNYRPVVSSMELMLS 227
Query: 107 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 166
+ +S +R+T+ST G+V + + +L + LA+SLHAP ++R +++P + +PLE+
Sbjct: 228 DHAYGLSKRRVTLSTSGVVPKMYELAQEL-DVALAISLHAPNDELRNELVPINKKYPLEQ 286
Query: 167 LMNALKEY----QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 222
LM A + Y ++ + IEY+MLDGVND +HA QL LL +NLIPFNP
Sbjct: 287 LMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNEHAEQLVALLGNLPSKINLIPFNPFP 346
Query: 223 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI--SAKST 280
+ + SS++++ +F IL + T+R+ G DI ACGQLV + D+ SA
Sbjct: 347 H-ANYDKSSNNRIHAFSNILSEA-GFVCTIRQTRGDDIDAACGQLVGQVADRTRRSAAWQ 404
Query: 281 PPVTDIED 288
+ D E+
Sbjct: 405 QSIKDREN 412
>gi|89095332|ref|ZP_01168250.1| hypothetical protein MED92_00580 [Neptuniibacter caesariensis]
gi|89080407|gb|EAR59661.1| hypothetical protein MED92_00580 [Oceanospirillum sp. MED92]
Length = 371
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 162/258 (62%), Gaps = 15/258 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P G R TLC+SSQVGC + C+FC+TG GF SNL++ EI+ QL A R
Sbjct: 101 PDGERKTLCVSSQVGCSLDCSFCSTGKQGFNSNLTTAEIIGQLRIAIRSYGEYNTTSQRV 160
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ +V+A+ + M + +S +R+T+ST G+V AI+K ++ +
Sbjct: 161 VSNVVLMGMGEPLMNFDNVVDAITLMMEDNAYCLSKRRVTLSTAGVVPAIDKLR-EVTDV 219
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEE 196
+LA+SLHAP D+R ++P + +P+++L+ A Y N K I +EY +++GVND+
Sbjct: 220 SLAISLHAPNDDLRDILVPINKRYPIKELVAACNRYLDNLNDKRVITVEYTLINGVNDKP 279
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
+HA QL K+L +N+IPFNP + S + S++++ +F++I+ I TTVR+
Sbjct: 280 EHAKQLLKILRRMPSKLNIIPFNPFPN-SGYERPSEERILAFKEIIVHG-GIVTTVRRTR 337
Query: 257 GQDISGACGQLVVNLPDK 274
G +I ACGQLV + D+
Sbjct: 338 GDEIDAACGQLVGQVADR 355
>gi|296104196|ref|YP_003614342.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058655|gb|ADF63393.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 388
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHELAALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|15803040|ref|NP_289070.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EDL933]
gi|12516911|gb|AAG57627.1|AE005481_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
Length = 384
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKXXNXETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP + R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPAAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|149926356|ref|ZP_01914617.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
gi|149824719|gb|EDM83933.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
Length = 379
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 161/292 (55%), Gaps = 31/292 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D NG VE V + P R TLC+SSQ GC + C FC+TG GF
Sbjct: 85 FDVGNGDAVETVFI--------------PEERRGTLCVSSQAGCAVNCRFCSTGKQGFSR 130
Query: 61 NLSSGEIVEQLVHASRLSN------------IRNVVFMGMGEPLNNYAALVEAVRIM-TG 107
NLS+ EIV QL A+ L + NVV MGMGEPL NY ALV A+++M
Sbjct: 131 NLSTAEIVAQLWKANVLLREAGDRVYAQERPVTNVVMMGMGEPLLNYDALVPALQLMLDD 190
Query: 108 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 167
+ +S +R+TVST G+V +++ D P + LAVSLHAP +R ++P + +PL +L
Sbjct: 191 TAYGLSRRRVTVSTSGVVPFMDRLSQDCP-VALAVSLHAPNDALRDHLVPLNKKYPLREL 249
Query: 168 MNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 226
++A Y K + + I EY+MLDGVND+ +HA QL ++ + NLIPFNP
Sbjct: 250 LDACLRYLKFAPRDFITFEYVMLDGVNDKPEHAQQLLEIAKIVPCKFNLIPFNPFPESGL 309
Query: 227 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 278
+++S + +F IL G+ + TTVRK G DI ACGQL + D+ K
Sbjct: 310 LKSTS-PAIKTFVDILGGA-GVVTTVRKTRGDDIDAACGQLAGEVRDRTKVK 359
>gi|313668447|ref|YP_004048731.1| hypothetical protein NLA_11430 [Neisseria lactamica 020-06]
gi|313005909|emb|CBN87365.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 364
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 155/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
AH+L L++ NLIPFNP + S + SS + + F+ IL+ + + TVRK G
Sbjct: 275 AHELINLVKDVPCKFNLIPFNPFPN-SGYERSSKENIRVFKDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|148653702|ref|YP_001280795.1| radical SAM protein [Psychrobacter sp. PRwf-1]
gi|205829828|sp|A5WGQ4.1|RLMN_PSYWF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|148572786|gb|ABQ94845.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter sp. PRwf-1]
Length = 403
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/285 (38%), Positives = 173/285 (60%), Gaps = 28/285 (9%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G VE V++ D S K NG R TLCISSQVGC + C+FC+TG GF+ +L++
Sbjct: 108 GSLVETVLIPADDS--KVNG-------RKTLCISSQVGCALDCSFCSTGKQGFERDLTAA 158
Query: 66 EIVEQL--VHASRL---------SNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVS 113
EI+ QL +AS + +N+ NVV MGMGEPL NY +V ++ +M + + +S
Sbjct: 159 EIIGQLWVANASYMEGVDSTEWQNNVTNVVMMGMGEPLLNYTPVVSSMGLMLSDHAYGLS 218
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
+R+T+ST G+V + + + D+ + LA+SLHAP ++R +++P + +PL +L+ A K
Sbjct: 219 KRRVTLSTSGVVPKMYELYKDI-DVALAISLHAPNDELRNELVPINKKYPLSELIAAAKA 277
Query: 174 YQKNS----QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 229
Y ++ ++ + IEY+ML GVND ++HA QL LL+ +NLIPFNP + +
Sbjct: 278 YVHDNNPRHKKHVTIEYVMLAGVNDSDEHAQQLVALLDGLPSKINLIPFNPFPH-APYDR 336
Query: 230 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
SS++++ +F IL + T+R+ G DI ACGQLV + D+
Sbjct: 337 SSNNRIHAFSNILNNA-GFVCTIRQTRGDDIDAACGQLVGQVADR 380
>gi|440713418|ref|ZP_20894019.1| radical SAM domain protein [Rhodopirellula baltica SWK14]
gi|436441884|gb|ELP35076.1| radical SAM domain protein [Rhodopirellula baltica SWK14]
Length = 364
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 156/273 (57%), Gaps = 20/273 (7%)
Query: 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSN 61
+ ++G +E+VI+R + R+TLC+SSQ+GC C+FCATG MG N
Sbjct: 66 ETESGMLIESVILRIATG-------------RTTLCVSSQIGCAAACDFCATGKMGIAKN 112
Query: 62 LSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPK 115
L++ EI++Q+V A ++ + N+VFMGMGEPL+N + EA+ ++T F SP
Sbjct: 113 LATEEILDQVVQAGQILRGEDRRLSNIVFMGMGEPLHNEVNVTEAIELLTASDHFARSPS 172
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
+ VSTVG+ + + P LNLA+SLH+ Q R +I+P + L +L + + E Q
Sbjct: 173 TVLVSTVGVPSGMLRLAKRFPSLNLALSLHSADQTTREKIIPLGKKASLTQLHDTILEIQ 232
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235
++ IEY+ML VND + A++L + +V VNLIP+N I + S +
Sbjct: 233 TTQDREFMIEYLMLRDVNDSAEDANRLIDWIGDLRVHVNLIPYNTIEASPHLHASPRPVI 292
Query: 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 268
SF IL+ S ++TTVR +G DI ACGQL+
Sbjct: 293 ESFADILKAS-GLKTTVRYSLGNDIEAACGQLI 324
>gi|348690006|gb|EGZ29820.1| hypothetical protein PHYSODRAFT_468167 [Phytophthora sojae]
Length = 261
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/183 (51%), Positives = 129/183 (70%), Gaps = 15/183 (8%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ Q+G +EAVIMR+ R+TLC+SSQVGC+MGC FCATGT+G +
Sbjct: 87 LKLQDGHEIEAVIMRHKG--------------RNTLCVSSQVGCQMGCTFCATGTLGIIA 132
Query: 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVS 120
+L SGEI+EQL HA+R++ IRNVVFMGMGEPLNNY A++ A+R MT + F ++PK IT+S
Sbjct: 133 DLCSGEILEQLAHANRVAPIRNVVFMGMGEPLNNYDAVLAAIRAMTKV-FGLAPKYITLS 191
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
TVG++H I + D P + LA+SLHAP Q++R +I+P + A+PL+KLM A+ E+
Sbjct: 192 TVGVIHRIKQLSHDAPLVRLALSLHAPTQEMRSEIVPTSTAYPLDKLMAAIDEHLAMKYV 251
Query: 181 KIF 183
IF
Sbjct: 252 DIF 254
>gi|392407646|ref|YP_006444254.1| 23S rRNA m(2)A-2503 methyltransferase [Anaerobaculum mobile DSM
13181]
gi|390620782|gb|AFM21929.1| 23S rRNA m(2)A-2503 methyltransferase [Anaerobaculum mobile DSM
13181]
Length = 344
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 147/238 (61%), Gaps = 5/238 (2%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGE 90
R T C+S+QVGC + C FCA+G GF NLS+GEI Q + + + +I N+V+MGMGE
Sbjct: 103 RLTACLSTQVGCPLSCAFCASGKSGFVRNLSTGEITGQFLAMEKFTGQDIDNIVYMGMGE 162
Query: 91 PLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 149
P N A+ +++RI+ + + + T+ST GIV I + L+VSLHAP
Sbjct: 163 PFLNQEAVFKSIRILNEPKMRGLGIRHFTISTAGIVPGILVLAEMKIPVRLSVSLHAPND 222
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
+R ++MP + +PL LM AL++YQ ++ +I IEY+M++GVND +HA++L LL
Sbjct: 223 QLRSKLMPINKQYPLSTLMEALRKYQSATKDRITIEYLMMNGVNDSTEHAYELATLLSGL 282
Query: 210 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V VNLIP+N + F+ S+D ++ +F IL NI +R++ G DI+ ACGQL
Sbjct: 283 SVYVNLIPYNTVPG-GNFKRSTDGRIKAFADIL-SKLNIECEIRRERGSDINAACGQL 338
>gi|268601574|ref|ZP_06135741.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291043577|ref|ZP_06569293.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae DGI2]
gi|268585705|gb|EEZ50381.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291012040|gb|EFE04029.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae DGI2]
Length = 364
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 157/256 (61%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLNDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDGVND+ QH
Sbjct: 215 LAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A++L +L++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 AYELIELVKDVPCKFNLIPFNPFPN-SGYERSSNENIRIFRDILQQAEFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|417854881|ref|ZP_12500147.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. Anand1_goat]
gi|338217251|gb|EGP03142.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. Anand1_goat]
Length = 394
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 120 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 179
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ +
Sbjct: 180 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDV 238
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ LM+++ Y S K+ IEY+MLD VND
Sbjct: 239 ALAISLHAPNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDG 298
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y VRK
Sbjct: 299 VEHAHQLAQVLKNTPCKINLIPWNPFPE-APYAKSSNSRIDRFQKTLM-EYGFTVIVRKT 356
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 357 RGDDIDAACGQLAGDVIDR 375
>gi|383310914|ref|YP_005363724.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. HN06]
gi|421264754|ref|ZP_15715719.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. P52VAC]
gi|425064743|ref|ZP_18467868.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida X73]
gi|425066859|ref|ZP_18469979.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida P1059]
gi|380872186|gb|AFF24553.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. HN06]
gi|401687798|gb|EJS83499.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. P52VAC]
gi|404380645|gb|EJZ77135.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida P1059]
gi|404380929|gb|EJZ77418.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida X73]
Length = 394
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 120 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 179
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ +
Sbjct: 180 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDV 238
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ LM+++ Y S K+ IEY+MLD VND
Sbjct: 239 ALAISLHAPNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDG 298
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y VRK
Sbjct: 299 VEHAHQLAQVLKNTPCKINLIPWNPFPE-APYAKSSNSRIDRFQKTLM-EYGFTVIVRKT 356
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 357 RGDDIDAACGQLAGDVIDR 375
>gi|452745027|ref|ZP_21944865.1| ribosomal RNA large subunit methyltransferase N [Mannheimia
haemolytica serotype 6 str. H23]
gi|452086867|gb|EME03252.1| ribosomal RNA large subunit methyltransferase N [Mannheimia
haemolytica serotype 6 str. H23]
Length = 386
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NLS EI+ Q+ AS++
Sbjct: 112 PEDDRATLCVSSQVGCALACTFCSTAQQGFNRNLSVAEIIGQVWRASKIIGNFGVTGVRP 171
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ IM + +S +R+T+ST G+V A++K + +
Sbjct: 172 ITNVVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQI-DV 230
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +++P + + ++ LM+++ +Y++ S K+ IEY+MLD VND
Sbjct: 231 ALAISLHAPNDELRDELVPINKKYNIKMLMDSVNKYREVSNANHGKVTIEYVMLDHVNDS 290
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HAHQL ++L+ +NLIP+NP + + SS+ +V FQK L Y TVRK
Sbjct: 291 TNHAHQLAEVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVTVRKT 348
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 349 RGDDIDAACGQLAGDVIDR 367
>gi|59801026|ref|YP_207738.1| hypothetical protein NGO0596 [Neisseria gonorrhoeae FA 1090]
gi|194098883|ref|YP_002001947.1| hypothetical protein NGK_1322 [Neisseria gonorrhoeae NCCP11945]
gi|240013924|ref|ZP_04720837.1| hypothetical protein NgonD_04618 [Neisseria gonorrhoeae DGI18]
gi|240016366|ref|ZP_04722906.1| hypothetical protein NgonFA_04214 [Neisseria gonorrhoeae FA6140]
gi|240121493|ref|ZP_04734455.1| hypothetical protein NgonPI_06948 [Neisseria gonorrhoeae PID24-1]
gi|254493940|ref|ZP_05107111.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268594999|ref|ZP_06129166.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae 35/02]
gi|268596621|ref|ZP_06130788.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae FA19]
gi|268599227|ref|ZP_06133394.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268603913|ref|ZP_06138080.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682376|ref|ZP_06149238.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268684534|ref|ZP_06151396.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268686844|ref|ZP_06153706.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|293398890|ref|ZP_06643055.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
gi|385335912|ref|YP_005889859.1| hypothetical protein NGTW08_1028 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|75356171|sp|Q5F911.1|RLMN_NEIG1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807190|sp|B4RMG2.1|RLMN_NEIG2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|59717921|gb|AAW89326.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193934173|gb|ACF29997.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|226512980|gb|EEH62325.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268548388|gb|EEZ43806.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae 35/02]
gi|268550409|gb|EEZ45428.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae FA19]
gi|268583358|gb|EEZ48034.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268588044|gb|EEZ52720.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622660|gb|EEZ55060.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268624818|gb|EEZ57218.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268627128|gb|EEZ59528.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291610304|gb|EFF39414.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
gi|317164455|gb|ADV07996.1| hypothetical protein NGTW08_1028 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 364
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 157/256 (61%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDGVND+ QH
Sbjct: 215 LAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A++L +L++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 AYELIELVKDVPCKFNLIPFNPFPN-SGYERSSNENIRIFRDILQQAEFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|238763546|ref|ZP_04624507.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
kristensenii ATCC 33638]
gi|238698178|gb|EEP90934.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
kristensenii ATCC 33638]
Length = 398
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------SNIR- 81
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++ + IR
Sbjct: 124 PEGDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAVKATGIRP 183
Query: 82 --NVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E + A++ Y S ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|148979605|ref|ZP_01815610.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3]
gi|145961690|gb|EDK26987.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3]
Length = 380
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P G R+TLC+SSQVGC + C FC+T GF NL EIV Q+ A+R
Sbjct: 99 PDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ ++ IM L F +S +R+TVST G+V +++ +D +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLMPSLEIMLDDLGFALSKRRVTVSTSGVVSGLDQM-TDNIDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R QIMP + ++ + +++ Y +S + K+ +EY++LD VND+
Sbjct: 218 ALAISLHAPNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HA +L +L++ +NLIPFNP S ++ S+ ++ FQK L Y+ TVRK
Sbjct: 278 MDHARELAELMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-EYDYTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|224373787|ref|YP_002608159.1| ribosomal RNA large subunit methyltransferase N [Nautilia
profundicola AmH]
gi|259491991|sp|B9L721.1|RLMN_NAUPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|223590036|gb|ACM93772.1| radical SAM enzyme, Cfr family [Nautilia profundicola AmH]
Length = 354
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/265 (40%), Positives = 161/265 (60%), Gaps = 11/265 (4%)
Query: 9 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 68
VE V+++ K +GK + + T+C+S+QVGCK+GC FC T GF NLS+GEIV
Sbjct: 88 VETVLIKMKDEEIK-DGKIKEA--KYTVCVSTQVGCKVGCAFCLTAKGGFVRNLSAGEIV 144
Query: 69 EQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTV 122
Q+ + N NVV+MGMGEPL+NY ALV+A++I+ +SP+R TVST
Sbjct: 145 AQVWWMKKFKNFDENKALNVVYMGMGEPLDNYDALVKAIKILANPDGMNISPRRQTVSTS 204
Query: 123 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 182
GI I + ++ G+NLA+SLHA ++R Q++P +A+ +E +++A++E+ + ++K+
Sbjct: 205 GIAPKIKRLGNENLGVNLAISLHAVDDELREQLIPLNKAYNIESVIDAIREFPIDKRKKV 264
Query: 183 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 242
EY+++ VND+ + A +L KLL VNLI FNP + F+ D + FQ L
Sbjct: 265 MFEYLVIKDVNDDIESAKKLVKLLNGIPSKVNLIYFNPYPG-TNFKRPDDATMKKFQDYL 323
Query: 243 RGSYNIRTTVRKQMGQDISGACGQL 267
I T+RK G DIS ACGQL
Sbjct: 324 INK-GIMCTIRKSKGMDISAACGQL 347
>gi|15603872|ref|NP_246946.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. Pm70]
gi|378774950|ref|YP_005177193.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida 36950]
gi|81636369|sp|Q9CJJ8.1|RLMN_PASMU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|12722449|gb|AAK04091.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
gi|356597498|gb|AET16224.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida 36950]
Length = 394
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 120 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 179
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ +
Sbjct: 180 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDV 238
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ LM+++ Y S K+ IEY+MLD VND
Sbjct: 239 ALAISLHAPNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDG 298
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y VRK
Sbjct: 299 VEHAHQLAQVLKNTPCKINLIPWNPFPE-APYAKSSNSRIDRFQKTLM-EYGFTVIVRKT 356
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 357 RGDDIDAACGQLAGDVIDR 375
>gi|90021078|ref|YP_526905.1| Crp/FNR family transcriptional regulator [Saccharophagus degradans
2-40]
gi|123090598|sp|Q21KT6.1|RLMN_SACD2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|89950678|gb|ABD80693.1| transcriptional regulator, Crp/Fnr family [Saccharophagus degradans
2-40]
Length = 398
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 161/259 (62%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P G R TLC+SSQVGC + C+FCATG GF +L++ EI+ Q+ A++ N
Sbjct: 105 PDGDRGTLCVSSQVGCSLDCSFCATGKQGFNRDLTAAEIIGQVWQAAKSFNQFGVGAQRK 164
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V+++ +M + +S +R+T+ST G+V A++K +
Sbjct: 165 ITNVVMMGMGEPLLNFDNVVDSMNLMMHDNCYGLSKRRVTLSTSGVVPALDKL-GEYTDA 223
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK---NSQQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +++P + +P+E L+ + K Y + ++K+ IEY ++D VND
Sbjct: 224 CLAISLHAPNNALRNELVPINKKYPIEMLLASAKRYIDGLPDVRRKMTIEYTLIDQVNDR 283
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L +LL+ V +NLIPFNP ++S ++ S++ + FQ+IL + TTVR
Sbjct: 284 PEHAHELAELLKDIPVKINLIPFNPF-NLSNYKRVSNNALRRFQQILIDA-GYTTTVRTT 341
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 342 RGDDIDAACGQLAGQVNDR 360
>gi|336417780|ref|ZP_08598065.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 11_3_2]
gi|336164727|gb|EGN67629.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 11_3_2]
Length = 358
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 155/273 (56%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDKGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++ +S
Sbjct: 138 NLSVSEILNQIYTIERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGINISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|152979682|ref|YP_001345311.1| ribosomal RNA large subunit methyltransferase N [Actinobacillus
succinogenes 130Z]
gi|205829707|sp|A6VQX9.1|RLMN_ACTSZ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|150841405|gb|ABR75376.1| radical SAM enzyme, Cfr family [Actinobacillus succinogenes 130Z]
Length = 371
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 157/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------SNIR- 81
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++ + IR
Sbjct: 97 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGIRP 156
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++K ++ +
Sbjct: 157 ITNVVMMGMGEPLLNMANVVPAMEIMLDDFAYGLSKRRVTISTSGVVPALDKL-PEMIDV 215
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ LM+++ Y S K+ IEY++LD VND
Sbjct: 216 ALAISLHAPNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVLLDHVNDG 275
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ +V FQK L Y TVRK
Sbjct: 276 TEHAHQLADVLKNTPCKINLIPWNPFPE-APYAKSSNSRVDRFQKTLM-EYGFTVTVRKT 333
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 334 RGDDIDAACGQLAGDVIDR 352
>gi|410694045|ref|YP_003624667.1| putative radical SAM enzyme, Cfr family, yfgB [Thiomonas sp. 3As]
gi|294340470|emb|CAZ88851.1| putative radical SAM enzyme, Cfr family, yfgB [Thiomonas sp. 3As]
Length = 379
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/289 (41%), Positives = 159/289 (55%), Gaps = 32/289 (11%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D G VEAV + P R+TLC+SSQ GC + C FC+TG GF
Sbjct: 87 FDVGQGNAVEAVFI--------------PEAQRNTLCVSSQAGCAVNCKFCSTGHQGFSR 132
Query: 61 NLSSGEIVEQLVHASRLSN-----------IRNVVFMGMGEPLNNYAALVEAVRIMTGLP 109
NL + EI+ QL HA I NVV MGMGEPL NY+ALV A+R M
Sbjct: 133 NLQTWEILAQLWHAEFTMRRELGLPGGERAISNVVMMGMGEPLQNYSALVPALRTMLDDD 192
Query: 110 -FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 168
+ +S +R+TVST G+V I++ D P + LAVSLHAPV +R +++P R +PL +L+
Sbjct: 193 GYGLSRRRVTVSTSGVVPMIDRLSQDCP-VALAVSLHAPVDALRDELVPLNRKYPLHELL 251
Query: 169 NALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQV--VVNLIPFNPIGSVS 225
A K Y + + I EY MLDGVND A L +L+ QV NLIPFNP S
Sbjct: 252 AACKRYLDFAPRDFITFEYCMLDGVNDTPALAQDLVRLVRAAQVNCKFNLIPFNPFPQ-S 310
Query: 226 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
+ SS +V++F ++L + + TTVRK G DI ACGQL + D+
Sbjct: 311 GLKRSSAARVAAFAQVLLDA-GLVTTVRKTRGDDIDAACGQLAGEVQDR 358
>gi|296136235|ref|YP_003643477.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
gi|295796357|gb|ADG31147.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
Length = 379
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/289 (41%), Positives = 159/289 (55%), Gaps = 32/289 (11%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D G VEAV + P R+TLC+SSQ GC + C FC+TG GF
Sbjct: 87 FDVGQGNAVEAVFI--------------PEAQRNTLCVSSQAGCAVNCKFCSTGHQGFSR 132
Query: 61 NLSSGEIVEQLVHASRLSN-----------IRNVVFMGMGEPLNNYAALVEAVRIMTGLP 109
NL + EI+ QL HA I NVV MGMGEPL NY+ALV A+R M
Sbjct: 133 NLQTWEILAQLWHAEFTMRRELGLPGGERAISNVVMMGMGEPLQNYSALVPALRTMLDDD 192
Query: 110 -FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 168
+ +S +R+TVST G+V I++ D P + LAVSLHAPV +R +++P R +PL +L+
Sbjct: 193 GYGLSRRRVTVSTSGVVPMIDRLSQDCP-VALAVSLHAPVDALRDELVPLNRKYPLHELL 251
Query: 169 NALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQV--VVNLIPFNPIGSVS 225
A K Y + + I EY MLDGVND A L +L+ QV NLIPFNP S
Sbjct: 252 AACKRYLDFAPRDFITFEYCMLDGVNDTPALAEDLVRLVRAAQVNCKFNLIPFNPFPQ-S 310
Query: 226 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
+ SS +V++F ++L + + TTVRK G DI ACGQL + D+
Sbjct: 311 GLKRSSAARVAAFAQVLLDA-GLVTTVRKTRGDDIDAACGQLAGEVQDR 358
>gi|354596617|ref|ZP_09014634.1| Ribosomal RNA large subunit methyltransferase N [Brenneria sp.
EniD312]
gi|353674552|gb|EHD20585.1| Ribosomal RNA large subunit methyltransferase N [Brenneria sp.
EniD312]
Length = 393
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 119 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 178
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 179 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 237
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + +E + A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 238 ALAISLHAPNDEIRNEIMPLNKKYNIETFLGAVRRYLEKSNANQGRVTVEYVMLDHINDG 297
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 298 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 355
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 356 RGDDIDAACGQLAGEVVDR 374
>gi|423138477|ref|ZP_17126120.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
nucleatum subsp. animalis F0419]
gi|371957842|gb|EHO75585.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
nucleatum subsp. animalis F0419]
Length = 358
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 155/273 (56%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDKGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++ +S
Sbjct: 138 NLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGINISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDKFYNYLKNVRRVNVTLRQEKGSDIDGACGQL 349
>gi|148263644|ref|YP_001230350.1| ribosomal RNA large subunit methyltransferase N [Geobacter
uraniireducens Rf4]
gi|205829769|sp|A5GEC2.1|RLMN_GEOUR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146397144|gb|ABQ25777.1| 23S rRNA m(2)A-2503 methyltransferase [Geobacter uraniireducens
Rf4]
Length = 343
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 145/240 (60%), Gaps = 4/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLCISSQVGC MGC FC TGT NL++ EIV Q+ R +RN+VFMGM
Sbjct: 97 PDEDRTTLCISSQVGCAMGCEFCLTGTFKLTRNLTTAEIVNQVCAVKRQEPVRNIVFMGM 156
Query: 89 GEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEPL N +V A++I+T FQ S +++TVST G+V + + + + +NLAVSL+A
Sbjct: 157 GEPLANLKNVVGALKILTDPDGFQFSTRKVTVSTSGLVPEMAELGASVT-VNLAVSLNAT 215
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
+VR +IMP R +PL++L+ A K + S++ I IEY+M+ GVND A +L +L+
Sbjct: 216 TDEVRDRIMPINRRYPLKELLAACKAFPLPSRRWITIEYVMIRGVNDSLDDAKRLVRLIS 275
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLIPFN + F+ + D + F K L + + R G DIS ACGQL
Sbjct: 276 NIPSKVNLIPFNEHDGCT-FQAPTQDSIDKFHKFLLDKH-VTVITRSSRGSDISAACGQL 333
>gi|420259500|ref|ZP_14762205.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. enterocolitica WA-314]
gi|404513031|gb|EKA26861.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. enterocolitica WA-314]
Length = 396
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------SNIR- 81
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++ + IR
Sbjct: 122 PEGDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAVKATGIRP 181
Query: 82 --NVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 182 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 240
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E + A++ Y S ++ +EY+MLD +ND
Sbjct: 241 ALAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDS 300
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 301 TEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 358
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 359 RGDDIDAACGQLAGEVIDR 377
>gi|123441415|ref|YP_001005402.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|205829928|sp|A1JKR9.1|RLMN_YERE8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|122088376|emb|CAL11167.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 398
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------SNIR- 81
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++ + IR
Sbjct: 124 PEGDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAVKATGIRP 183
Query: 82 --NVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E + A++ Y S ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|86145592|ref|ZP_01063922.1| hypothetical protein MED222_01522 [Vibrio sp. MED222]
gi|218708638|ref|YP_002416259.1| ribosomal RNA large subunit methyltransferase N [Vibrio splendidus
LGP32]
gi|254807223|sp|B7VJT5.1|RLMN_VIBSL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|85836563|gb|EAQ54689.1| hypothetical protein MED222_01522 [Vibrio sp. MED222]
gi|218321657|emb|CAV17609.1| Predicted Fe-S-cluster redox enzyme [Vibrio splendidus LGP32]
Length = 380
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P G R+TLC+SSQVGC + C FC+T GF NL EIV Q+ A+R
Sbjct: 99 PDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ ++ +M L F +S +R+TVST G+V +++ +D +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPSLELMLDDLGFSLSKRRVTVSTSGVVSGLDQM-TDNIDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP +R QIMP + ++ + +++ Y +S K+ +EY++LD VND+
Sbjct: 218 ALAISLHAPNDALRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HA +L +L++ +NLIPFNP S ++ S+ ++ FQK L YN TVRK
Sbjct: 278 MDHARELAELMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-EYNYTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|84387623|ref|ZP_00990640.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01]
gi|84377468|gb|EAP94334.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01]
Length = 380
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P G R+TLC+SSQVGC + C FC+T GF NL EIV Q+ A+R
Sbjct: 99 PDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIGLEKDTGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ ++ +M L F +S +R+TVST G+V +++ +D +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPSLELMLDDLGFSLSKRRVTVSTSGVVSGLDQM-TDNIDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP +R QIMP + ++ + +++ Y +S K+ +EY++LD VND+
Sbjct: 218 ALAISLHAPNDALRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HA +L +L++ +NLIPFNP S ++ S+ ++ FQK L YN TVRK
Sbjct: 278 MDHARELAELMKETPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-EYNYTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|218886526|ref|YP_002435847.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|254807169|sp|B8DRU2.1|RLMN_DESVM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|218757480|gb|ACL08379.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 367
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/275 (41%), Positives = 162/275 (58%), Gaps = 27/275 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE V++ +S R G R T C+S QVGC MGC FC+TG+MGF+ N++
Sbjct: 86 DGALVETVLIPSES---------REGKVRMTQCLSCQVGCAMGCTFCSTGSMGFERNMTM 136
Query: 65 GEIVEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVS 113
EI+ Q LV L + +RN+VFMGMGEPL N ++ ++R + GL F S
Sbjct: 137 AEILGQVLVAREHLGDDRPDHPIVRNLVFMGMGEPLLNLNEVMRSLRTLNDEFGLCF--S 194
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 172
P+RITVST GI + + GL LAVSLHAP Q+VR +IMP A + L+ LM AL+
Sbjct: 195 PRRITVSTCGIEKGLRELGES--GLAFLAVSLHAPNQEVRARIMPRAARWTLDDLMAALE 252
Query: 173 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 232
Y ++++I EY++L GVND HA +L +L+ + +NLI +NP + + S
Sbjct: 253 SYPLKTRERITFEYLLLGGVNDSIDHARELVRLVSRTKAKLNLIVYNPAEGLP-YEAPSQ 311
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ +F++ L S N+ +RK GQDI ACGQL
Sbjct: 312 ARILAFEQYL-WSKNVTAIIRKSKGQDIKAACGQL 345
>gi|238753878|ref|ZP_04615238.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri
ATCC 29473]
gi|238707866|gb|EEQ00224.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri
ATCC 29473]
Length = 398
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PEGDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E + A++ Y S ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|268678701|ref|YP_003303132.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM
6946]
gi|268616732|gb|ACZ11097.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM
6946]
Length = 358
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 154/241 (63%), Gaps = 8/241 (3%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR-----NVVFMG 87
R T+CISSQVGCK+GC FC TG GFK NL++GEI Q++ R + I N+V+MG
Sbjct: 110 RYTICISSQVGCKIGCAFCLTGKSGFKRNLTAGEITTQVLMIKRDNAIAENRRVNIVYMG 169
Query: 88 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
MGEPL+N + +AVRI + L +SP+R T+ST G+ I K G+ LA+SLHA
Sbjct: 170 MGEPLDNLTNVSKAVRIFSDLDGLSISPRRQTISTSGLSSQIEKLGKMDLGILLAISLHA 229
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
D+R ++MP +A+ +E +MNA++ + ++++++ EY+++ GVND+++ A +L KLL
Sbjct: 230 VDDDLRQKLMPINKAYNIESIMNAVRGFPIDARKRVMFEYLVMKGVNDDQKSAKKLVKLL 289
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
+ VNLI FNP R S+ D + +FQ+ L + + T+R+ G DIS ACGQ
Sbjct: 290 HGIKAKVNLIYFNPHAGSDFDRPSTKDMI-AFQQYL-VDHGVLCTIRQSKGLDISAACGQ 347
Query: 267 L 267
L
Sbjct: 348 L 348
>gi|325297954|ref|YP_004257871.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
salanitronis DSM 18170]
gi|324317507|gb|ADY35398.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
salanitronis DSM 18170]
Length = 348
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/264 (39%), Positives = 155/264 (58%), Gaps = 18/264 (6%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
G FVE+V + P G R+TLC+SSQVGCKM C FC TG G+ +L+
Sbjct: 86 EGNFVESVYI--------------PDGERATLCVSSQVGCKMNCKFCMTGKQGYAGSLTV 131
Query: 65 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVG 123
+I+ Q+ ++ NVVFMGMGEP +N A++ A+ I+T + SPKRITVSTVG
Sbjct: 132 TQILNQIYSIPERDSLTNVVFMGMGEPFDNLDAVLRALEILTSDYGYAWSPKRITVSTVG 191
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
+ + +F ++ +LAVSLH+P R ++MPA RAFP+ +++N L+ Y + Q+++
Sbjct: 192 LRRGLERFLAE-SDCHLAVSLHSPFPSQRAELMPAERAFPITEIVNVLRNYDFSKQRRLS 250
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
EYI+ GVND +A +L KLL +NLI F+ I V + + + +++F+ L
Sbjct: 251 FEYILFGGVNDSLVYAKELVKLLRGLDCRINLIRFHAIPGVD-LQGADMETMTAFRDYL- 308
Query: 244 GSYNIRTTVRKQMGQDISGACGQL 267
+ I T+R G+DI ACG L
Sbjct: 309 TKHGIFATIRASRGEDIFAACGML 332
>gi|304311805|ref|YP_003811403.1| hypothetical protein HDN1F_21750 [gamma proteobacterium HdN1]
gi|301797538|emb|CBL45758.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
Length = 410
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 159/258 (61%), Gaps = 15/258 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P G R TLC+SSQVGC + C+FC+TG GF+ +L++ EI+ QL A+R N
Sbjct: 101 PDGNRGTLCVSSQVGCSLDCSFCSTGKQGFQRDLTAAEIIAQLWVANRSFGVPDNKGHRN 160
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM L + V+ KR+T+ST G+V + + D +
Sbjct: 161 ITNVVMMGMGEPLLNLDNVVSAMEIMKDDLGYGVARKRVTLSTSGVVPKMYELF-DRIDV 219
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEE 196
+LAVSLHAP +R ++MP R +PL +L+ A + Y + N +++ +EY++LDG+ND
Sbjct: 220 SLAVSLHAPNDTLRDELMPINRKYPLAELLKACRYYVDKYNDGRRVTMEYVLLDGINDTF 279
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
HA +L +LL +NLIPFNP + ++ + +V +FQ++L + + TT+R
Sbjct: 280 AHAAELVELLRDVPSKINLIPFNPFPH-APYKRPNGYRVKAFQEVLLKADYV-TTIRTTR 337
Query: 257 GQDISGACGQLVVNLPDK 274
G DI ACGQLV + D+
Sbjct: 338 GDDIDAACGQLVGQVQDR 355
>gi|224826446|ref|ZP_03699548.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania ferrooxidans
2002]
gi|347540922|ref|YP_004848347.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania sp. NH8B]
gi|224601547|gb|EEG07728.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania ferrooxidans
2002]
gi|345644100|dbj|BAK77933.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania sp. NH8B]
Length = 364
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 156/261 (59%), Gaps = 13/261 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NLS+ EI+ QL A++ I
Sbjct: 96 PEDDRGTLCISSQVGCALECTFCSTGRQGFNRNLSTAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL N+ +V A++IM + +S +R+TVST G+V +++ P +
Sbjct: 156 SNVVMMGMGEPLANFDNVVSALQIMLDDHGYGLSRRRVTVSTSGMVPQMDRLREACP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHAP +R I+P + +PL +LM A + Y +K + + EY+MLD VND +H
Sbjct: 215 LAVSLHAPNDAIRDVIVPINKKYPLRELMAACQRYLEKAPRDFVTFEYVMLDDVNDRPEH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A QL +L++ NLIPFNP + S + SS++ + F++IL+ + + TVRK G
Sbjct: 275 ARQLIELVKDVPCKFNLIPFNPFPN-SGYERSSNNAIHRFREILQEAGYV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDKISAKS 279
DI ACGQL + DK K+
Sbjct: 333 DIDAACGQLAGQVQDKTRRKT 353
>gi|34498996|ref|NP_903211.1| hypothetical protein CV_3541 [Chromobacterium violaceum ATCC 12472]
gi|81654669|sp|Q7NS85.1|RLMN_CHRVO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|34104846|gb|AAQ61203.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 364
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 159/269 (59%), Gaps = 15/269 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLC+SSQVGC + C FC+TG GF NLS+ EI+ QL A++ +
Sbjct: 96 PEDDRGTLCVSSQVGCALECTFCSTGRQGFNRNLSTAEIIGQLWWANKAMGVTPKNERVV 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL N+ +V A++IM + +S +R+T+ST G+V +++ + P +
Sbjct: 156 SNVVMMGMGEPLANFDNVVSAMQIMLDDHGYGLSRRRVTLSTSGLVPQMDRLREECP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHAP +R I+P + +PL +LM A + Y +K + I EY+MLDGVND +H
Sbjct: 215 LAVSLHAPNDAIRDVIVPINKKYPLSELMAACRRYLEKAPRDFITFEYVMLDGVNDRPEH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A QL +L+ NLIPFNP + S + SS++ + F++IL+ + TVRK G
Sbjct: 275 ARQLLELVRDVPCKFNLIPFNPFPN-SGYDRSSNNAIRIFREILQEQGYV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDKI--SAKSTPPVTD 285
DI ACGQL + DK AK T + D
Sbjct: 333 DIDAACGQLAGQVQDKTRRQAKWTQIIED 361
>gi|406662502|ref|ZP_11070597.1| Ribosomal RNA large subunit methyltransferase N [Cecembia
lonarensis LW9]
gi|405553575|gb|EKB48780.1| Ribosomal RNA large subunit methyltransferase N [Cecembia
lonarensis LW9]
Length = 353
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 145/246 (58%), Gaps = 9/246 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV----HASRLSN--IRN 82
P R T C+SSQVGC + CNFCAT + NL+ EI +Q+V A N + N
Sbjct: 100 PTEKRITACVSSQVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIKEEAETYFNRPLTN 159
Query: 83 VVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
+VFMGMGEPL NY ++EA+ +T ++P+RIT+STVGI I K D NLA
Sbjct: 160 IVFMGMGEPLLNYNNVIEAIDKITAPEGLGMAPRRITLSTVGIPKMIKKMADDEVKFNLA 219
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
+SLH+ + + R ++MP PLE L ALK + + +++K+ EY++ +G+ND+E+HA
Sbjct: 220 ISLHSAINETRSRLMPINEVNPLEDLAEALKYWYQKTKRKVTYEYVIWEGINDDEKHAKA 279
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L K + VN+I +NPI +FR +S + V + ++L I VRK GQDI
Sbjct: 280 LAKFCKIIPSKVNIIQYNPIDD-GEFRQASQEAVDMYVRVLEDQ-GIIAKVRKSRGQDID 337
Query: 262 GACGQL 267
ACGQL
Sbjct: 338 AACGQL 343
>gi|294101228|ref|YP_003553086.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM
12261]
gi|293616208|gb|ADE56362.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM
12261]
Length = 347
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/267 (38%), Positives = 159/267 (59%), Gaps = 20/267 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
Q+G +E+V++ + G +T CISSQVGC + C FCATG GF NL+
Sbjct: 88 QDGQRIESVLLSH--------------GNHNTACISSQVGCPLACAFCATGKGGFVRNLT 133
Query: 64 SGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ-VSPKRITVS 120
GEIV Q + + + NI N+VFMGMGEPL N AL ++++I+ + + + +T+S
Sbjct: 134 PGEIVGQFLAMEKAAGQNITNIVFMGMGEPLLNQEALFKSIKILNHPKMRGLGARHMTIS 193
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
T GIV I + L+VSLH +R ++MP + +PL L+ AL++YQ+ +
Sbjct: 194 TAGIVPGIRALTELEIPVRLSVSLHGTNDMLRNKLMPINQQYPLGSLIEALRDYQQKTGD 253
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
++ IEY+M+D VND + A++L L+ + VNLIP+NP+ + +R SS +++ +F K
Sbjct: 254 RVTIEYVMIDRVNDNTEQAYELAALMNGLSIYVNLIPYNPVDAT--YRRSSQERIKAFGK 311
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQL 267
IL NI +R++ G DI+ ACGQL
Sbjct: 312 IL-SELNIEYEIRREKGSDINAACGQL 337
>gi|229918582|ref|YP_002887228.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium
sp. AT1b]
gi|229470011|gb|ACQ71783.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
Length = 361
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 161/275 (58%), Gaps = 26/275 (9%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ Q+G +E V+MR++ +++C+++QVGC++GC FCA+ G K
Sbjct: 95 FELQDGYSIETVLMRHEYG--------------NSICVTTQVGCRIGCTFCASTLGGLKR 140
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQV 112
NL +GEI Q++ R + ++V MG+GEP +NY L+ +R + GL +
Sbjct: 141 NLEAGEITAQVLDVQRALDATGERVDSIVVMGIGEPFDNYDELMRFLRTVNHDNGL--NI 198
Query: 113 SPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 172
+ ITVST GIV I KF + +N A+SLHAP ++R ++MP RAF L+KLM+A++
Sbjct: 199 GARHITVSTSGIVPKIYKFADEGMRINFAISLHAPTTELRTKLMPINRAFDLDKLMDAVR 258
Query: 173 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 232
Y + S ++I EY + GVND E++AH L LL+ + VNLIP N + RT
Sbjct: 259 YYTEKSGRRITFEYGLFGGVNDTEEYAHLLADLLKGIKCHVNLIPVNHVLERDYVRTPR- 317
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ +F+K+L+ N+ T+R++ G DI ACGQL
Sbjct: 318 AQIFAFEKVLKDR-NVNVTIRREQGSDIDAACGQL 351
>gi|256844888|ref|ZP_05550346.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2]
gi|256718447|gb|EEU32002.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2]
Length = 358
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 156/273 (57%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++ G +E V++R+ S K R R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDKGTIETVLLRHKDS------KNRE--IRNTLCVSSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++ +S
Sbjct: 138 NLSVSEILNQIYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGINISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISEADANALADFIHQFDHVVNLIPYNEVEGVEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|404375858|ref|ZP_10981038.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
1_1_43]
gi|404290621|gb|EJZ47528.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
1_1_43]
Length = 384
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEQAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|78484965|ref|YP_390890.1| hypothetical protein Tcr_0620 [Thiomicrospira crunogena XCL-2]
gi|123741643|sp|Q31I07.1|RLMN_THICR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|78363251|gb|ABB41216.1| radical SAM enzyme, Cfr family [Thiomicrospira crunogena XCL-2]
Length = 370
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 154/257 (59%), Gaps = 14/257 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C+FC+TG GF NL + EIV Q+ A++ I
Sbjct: 102 PEKSRGTLCISSQVGCALECSFCSTGQQGFNRNLENWEIVAQMWVANKALGCKPKEERII 161
Query: 81 RNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVVFMGMGEPL N RI M + +S +R+T+ST G+V AI+K L ++
Sbjct: 162 SNVVFMGMGEPLLNVKHTFPTARILMDDNAYGLSKRRVTISTAGVVPAIDKIKESL-DVS 220
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK--NSQQKIFIEYIMLDGVNDEEQ 197
LA+SLHAP +R +++P + +PLE LM AL Y + +S++ + +EY+MLD VND +
Sbjct: 221 LAISLHAPNNALRDELVPINKKYPLEVLMPALHRYVEGGHSKKHVTVEYVMLDHVNDRLE 280
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL +LL VNLIPFNP + + ++ SS++ V F+ L + + TVR+ G
Sbjct: 281 HAQQLIELLGDLPCKVNLIPFNPFPN-TDYKRSSNNAVHRFKDALMEA-GVNCTVRRTRG 338
Query: 258 QDISGACGQLVVNLPDK 274
DI ACGQL + D+
Sbjct: 339 DDIDAACGQLAGKVKDR 355
>gi|222099877|ref|YP_002534445.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
neapolitana DSM 4359]
gi|254807220|sp|B9K7Z6.1|RLMN_THENN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|221572267|gb|ACM23079.1| Radical SAM enzyme, Cfr family [Thermotoga neapolitana DSM 4359]
Length = 343
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 169/280 (60%), Gaps = 22/280 (7%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++G +E+V++ + PG R T CIS+QVGC +GC FCATG GF
Sbjct: 82 WELEDGNTIESVMIFH------------PG--RITACISTQVGCPVGCTFCATGMSGFVR 127
Query: 61 NLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF-QVSPKRI 117
NL++GEIV Q++ + I NVV+MGMGEPL NY ++++RI+ + +RI
Sbjct: 128 NLTTGEIVSQILSMEKEEGKKIGNVVYMGMGEPLLNYENTIKSIRILNHKKMGNIGIRRI 187
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+STVGI I + + + LA+SLHAP R Q++P R + +E+++NA+K YQ
Sbjct: 188 TISTVGIPEKIIQLADEGLDVKLALSLHAPTNFKRDQLVPLNRKYSVEEILNAIKVYQMK 247
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
+ +++ IEY+++ GVNDE A +L ++L+ +V VNLIP NP +V+ S ++ +
Sbjct: 248 TGKRVTIEYVLIRGVNDEISDAKKLAEILKGLKVFVNLIPVNP--TVAGLSKPSRQRILA 305
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 277
F++IL + I +R++ G DI ACGQL L K+S+
Sbjct: 306 FKRILLEN-GIEAEIRQEKGSDIEAACGQL--RLKRKVSS 342
>gi|335038848|ref|ZP_08532050.1| Ribosomal RNA large subunit methyltransferase N [Caldalkalibacillus
thermarum TA2.A1]
gi|334181264|gb|EGL83827.1| Ribosomal RNA large subunit methyltransferase N [Caldalkalibacillus
thermarum TA2.A1]
Length = 355
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 159/273 (58%), Gaps = 25/273 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+MR+ L ++C+++QVGC +GC FCA+G + +LSS
Sbjct: 86 DGHMIETVLMRHHYGL--------------SVCVTTQVGCNIGCTFCASGLLKKSRDLSS 131
Query: 65 GEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
GEIVEQ++ + + + +VV MG+GEP +NY L++ +RI+ + +R
Sbjct: 132 GEIVEQIIKVQQYLDEYEQGNRVSHVVVMGIGEPFDNYDHLMDFLRIINDQDGLAIGARR 191
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
ITVST GIV I +F +NLA+SLHAP ++R QIM RA+PL++LM A + Y
Sbjct: 192 ITVSTSGIVPKIYQFADANLQVNLAISLHAPNDELRTQIMKINRAYPLKELMRACQYYVA 251
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDK 234
+ ++I EYI+L VND +Q A QL L+ + V VNLIP+NP+ Q++ S+
Sbjct: 252 KTNRRITFEYILLKDVNDHKQEALQLADLIGDMRHLVYVNLIPYNPVAEHQQYQRSTPQA 311
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V +F + L+ I +R++ G DI ACGQL
Sbjct: 312 VQAFYETLKAK-GINCGIRREHGTDIDAACGQL 343
>gi|330446674|ref|ZP_08310326.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328490865|dbj|GAA04823.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 373
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A++
Sbjct: 99 PDEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKEIGVQKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V + + ++ +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R QIMP + +E ++A++ Y ++ + ++ +EY++LD VND+
Sbjct: 218 ALAISLHAPTDELRSQIMPINNRWDIETFLDAVRRYVNSTNANRGRVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA QL K+L+ +NLIPFNP S ++ S+ ++ F K L Y+ TVRK
Sbjct: 278 MEHARQLAKVLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFMKTLM-EYDFTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|254480238|ref|ZP_05093486.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
HTCC2148]
gi|214039800|gb|EEB80459.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
HTCC2148]
Length = 391
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 169/284 (59%), Gaps = 30/284 (10%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+ GG VEAV++ P G R+TLC+SSQVGC + C+FC+TG GF+ +LS
Sbjct: 101 EGGGLVEAVLI--------------PDGKRATLCVSSQVGCSLDCSFCSTGKQGFQRDLS 146
Query: 64 SGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVS 113
+ EI+ Q+ A + + + NVV MGMGEPL N+ +V A+ + M + +S
Sbjct: 147 AAEIIGQVWLAIKSYDAFQSAKGRIVTNVVMMGMGEPLLNFDNVVAAMDLMMEDNAYGIS 206
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
+R+T+ST G+V A++K + + ++LAVSLHAP +R +++P R +P+ L+ + +
Sbjct: 207 KRRVTLSTSGVVPALDKL-AKVSEVSLAVSLHAPNDALRSELVPINRKYPIAVLLESARN 265
Query: 174 Y---QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTS 230
Y Q + ++ + IEY ++ GVND+ +HA +L +LL+ + +NLIPFN S +R
Sbjct: 266 YIDAQSDKKRVVTIEYTLIAGVNDQREHAQELAQLLKGYPCKINLIPFNTFDQ-SDYRRP 324
Query: 231 SDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
S + VS F ++L + I TVR G DI ACGQLV + D+
Sbjct: 325 SGNAVSRFWQVLVDAGYI-VTVRTTRGDDIDAACGQLVGQVVDR 367
>gi|336451639|ref|ZP_08622076.1| methyltransferase [Idiomarina sp. A28L]
gi|336281452|gb|EGN74732.1| methyltransferase [Idiomarina sp. A28L]
Length = 378
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 155/258 (60%), Gaps = 15/258 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+TG GF NL EI+ Q+ ++L
Sbjct: 101 PEADRATLCVSSQVGCALECTFCSTGQQGFNRNLKVSEIIGQVWRVNKLLGSYGDTGVKP 160
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N LV A+++M + +S +RITVST G+V A+++ + +
Sbjct: 161 VTNVVMMGMGEPLLNMKNLVPALQLMLEDFGYGLSKRRITVSTSGVVPALDQLREQV-DV 219
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS--QQKIFIEYIMLDGVNDEE 196
LA+SLHAP +R +I+P + +P+ + + A + Y + S Q K+ +EY+M+D +ND
Sbjct: 220 ALAISLHAPNNKLRDEIVPINKKYPIAEFLAASRRYVEASKAQTKVTVEYVMIDHINDST 279
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
+HAH+L ++L+ +NLIPFNP S++ SS+ ++ F K+L Y VRK
Sbjct: 280 EHAHELAEVLKDTPSKINLIPFNPFPG-SEYGRSSNSRIDRFSKVLM-DYGYTVIVRKTR 337
Query: 257 GQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 338 GDDIDAACGQLVGDVVDR 355
>gi|440681177|ref|YP_007155972.1| 23S rRNA m(2)A-2503 methyltransferase [Anabaena cylindrica PCC
7122]
gi|428678296|gb|AFZ57062.1| 23S rRNA m(2)A-2503 methyltransferase [Anabaena cylindrica PCC
7122]
Length = 356
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 149/241 (61%), Gaps = 5/241 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFM 86
P R T+C+S+QVGC M C+FCATG G+K NLS EIV+Q+ V + NVVFM
Sbjct: 114 PSDKRLTVCVSTQVGCPMACDFCATGKGGYKRNLSCAEIVDQVLTVQEDFQQRVSNVVFM 173
Query: 87 GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
GMGEPL N ++ A++ + + + +TVSTVGI I + L + LAVSLHA
Sbjct: 174 GMGEPLLNTENVISAIKSINQ-DVGIGARSLTVSTVGIRDRIRQLAEHLFQITLAVSLHA 232
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
P Q +R Q++P+A+ +P+E L++ +EY + + +++ EYI+L GVND +HA +L K L
Sbjct: 233 PNQALREQLIPSAKPYPIEDLLDECREYVEITGRRVTFEYILLAGVNDLPEHALELSKRL 292
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
FQ VNLIP+NPI V ++ + D++ +F +L+ N +VR G + ACGQ
Sbjct: 293 RGFQSHVNLIPYNPIEEVD-YKRPNRDRIQAFVNVLQ-QQNTAVSVRYSRGLEADAACGQ 350
Query: 267 L 267
L
Sbjct: 351 L 351
>gi|332162639|ref|YP_004299216.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|418241088|ref|ZP_12867621.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica PhRBD_Ye1]
gi|433548003|ref|ZP_20504053.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica IP 10393]
gi|325666869|gb|ADZ43513.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859271|emb|CBX69621.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica W22703]
gi|351779572|gb|EHB21678.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica PhRBD_Ye1]
gi|431790563|emb|CCO67093.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica IP 10393]
Length = 397
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 123 PEGDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRP 182
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 183 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 241
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E + A++ Y S ++ +EY+MLD +ND
Sbjct: 242 ALAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDS 301
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 302 TEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 359
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 360 RGDDIDAACGQLAGEVIDR 378
>gi|157364703|ref|YP_001471470.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
lettingae TMO]
gi|205829915|sp|A8F8C2.1|RLMN_THELT RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|157315307|gb|ABV34406.1| radical SAM enzyme, Cfr family [Thermotoga lettingae TMO]
Length = 343
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 152/239 (63%), Gaps = 6/239 (2%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEP 91
+T CIS+Q+GC + C+FCATG GF NL +GEIV Q++ + S +RN+V+MGMGEP
Sbjct: 100 ATACISTQIGCPVKCSFCATGQSGFVRNLDAGEIVSQILAIEKDSKQTVRNIVYMGMGEP 159
Query: 92 LNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 150
L NY ++++++I+ + + +R+T+STVGI I K + LNLA+SLHA +
Sbjct: 160 LLNYDNVIKSIKILIDKKTKNIGIRRVTLSTVGIPEMILKLSEERLDLNLAISLHASTNE 219
Query: 151 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 210
R QI+P R + +++++NA K YQ+ S +++ IEYI++ ND ++ A +L KLL +
Sbjct: 220 KRDQIIPINRKYSIQEIINAAKNYQERSDRRLTIEYILIKEFNDFDEDARKLAKLLNGLK 279
Query: 211 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
V VNLIP N + S F + K++ F++IL S I +R + G DI ACGQL +
Sbjct: 280 VFVNLIPVN--STFSNFEKPAKWKINRFKEILINS-GIEAEIRYEKGADIEAACGQLRI 335
>gi|238788173|ref|ZP_04631968.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
frederiksenii ATCC 33641]
gi|238723760|gb|EEQ15405.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
frederiksenii ATCC 33641]
Length = 398
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PEGDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E + A++ Y S ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|374580707|ref|ZP_09653801.1| 23S rRNA m2A2503 methyltransferase [Desulfosporosinus youngiae DSM
17734]
gi|374416789|gb|EHQ89224.1| 23S rRNA m2A2503 methyltransferase [Desulfosporosinus youngiae DSM
17734]
Length = 351
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/274 (36%), Positives = 164/274 (59%), Gaps = 25/274 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
Q+ +E V+MR+ L ++C+++QVGC +GC+FCA+G + + +LS
Sbjct: 86 QDDNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLSKQRDLS 131
Query: 64 SGEIVEQLVHAS-------RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKR 116
SGEIVEQ++ + + +VV MG+GEP +NYA + +A+RI+T P R
Sbjct: 132 SGEIVEQIMKVQLDMDKGHKGEKVSHVVVMGIGEPFDNYANVTDALRIITDHKGLAIPGR 191
Query: 117 -ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
ITVST G+ I +F +NLA+SLHAP +R QIM R FP+EKL+ AL+ Y
Sbjct: 192 HITVSTSGLADKIYEFADSDLKVNLAISLHAPTNQLRGQIMKINRVFPIEKLIRALEYYL 251
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDD 233
+++++ +EYI++ +ND+ +HA QL +L + + VNLIP+NP+ Q++ S +
Sbjct: 252 NKTKRRVTLEYILIKDLNDQREHALQLCQLTANMRQLINVNLIPYNPVDEHQQYQRSDHE 311
Query: 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +F +L+ ++ ++R + G+DI ACGQL
Sbjct: 312 TMLAFYDVLKKQ-GMKCSIRLEHGRDIDAACGQL 344
>gi|238794833|ref|ZP_04638434.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
intermedia ATCC 29909]
gi|238725846|gb|EEQ17399.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
intermedia ATCC 29909]
Length = 398
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------SNIR- 81
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++ + IR
Sbjct: 124 PEGDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAVKATGIRP 183
Query: 82 --NVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPTDDIRDEIVPINRKYNIEAFLAAVRRYLDKSKANGGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 VEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|347732286|ref|ZP_08865367.1| 23S rRNA methyltransferase [Desulfovibrio sp. A2]
gi|347518820|gb|EGY25984.1| 23S rRNA methyltransferase [Desulfovibrio sp. A2]
Length = 378
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/275 (41%), Positives = 163/275 (59%), Gaps = 27/275 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE V++ +S R G R T C+S QVGC MGC FC+TG+MGF+ N++
Sbjct: 86 DGALVETVLIPSES---------REGKVRMTQCLSCQVGCAMGCTFCSTGSMGFERNMTM 136
Query: 65 GEIVEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVS 113
EI+ Q LV L + +RN+VFMGMGEPL N ++ ++R + GL F S
Sbjct: 137 AEILGQVLVAREHLGDDRPDHPIVRNLVFMGMGEPLLNLNEVMRSLRTLNDEFGLCF--S 194
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 172
P+RITVST GI + + GL LAVSLHAP Q++R +IMP A + L+ LM AL+
Sbjct: 195 PRRITVSTCGIEKGLRELGES--GLAFLAVSLHAPNQELRARIMPRAARWTLDDLMAALE 252
Query: 173 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 232
Y ++++I EY++L GVND +HA +L +L+ + +NLI +NP + + S
Sbjct: 253 SYPLKTRERITFEYLLLGGVNDSIEHARELVRLVSRTKAKLNLIVYNPAEGLP-YEAPSQ 311
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ +F++ L S N+ +RK GQDI ACGQL
Sbjct: 312 ARILAFEQYL-WSKNVTAIIRKSKGQDIKAACGQL 345
>gi|408356068|ref|YP_006844599.1| ribosomal RNA large subunit methyltransferase N [Amphibacillus
xylanus NBRC 15112]
gi|407726839|dbj|BAM46837.1| ribosomal RNA large subunit methyltransferase N [Amphibacillus
xylanus NBRC 15112]
Length = 353
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 159/275 (57%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+MR+ L ++C+++QVGC +GC FCA+G + +L+S
Sbjct: 88 DGNLIETVLMRFPYGL--------------SVCVTTQVGCNIGCTFCASGLLKKNRDLTS 133
Query: 65 GEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEIVEQ+V +L + ++V MG+GEP +NY + +R + GL +
Sbjct: 134 GEIVEQIVRIQKLLDEQGKGEKVSHIVVMGIGEPFDNYDNTMNFLRTVNDPDGLA--IGA 191
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+ H I F + +NLAVSLHAP ++R IM RAFP+EKLM+A+ Y
Sbjct: 192 RHITVSTSGLAHKIRAFADEQLQVNLAVSLHAPNNELRTSIMKINRAFPIEKLMDAIDYY 251
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + +++ EYI+L GVND+++HA QL LL+ + + VNLIP+NP+ +Q+ S
Sbjct: 252 LEKTNRRVTFEYILLKGVNDQKEHALQLVNLLKDKRHLSYVNLIPYNPVEEHNQYERSEK 311
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F ++L I VR + G DI ACGQL
Sbjct: 312 QTIVDFYEVLLKQ-GINCGVRVEQGSDIDAACGQL 345
>gi|421855029|ref|ZP_16287411.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
gi|403189529|dbj|GAB73612.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
Length = 411
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 162/261 (62%), Gaps = 20/261 (7%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSN 79
G R TLCISSQVGC + C+FC+TG GF+ +L+ EI+ QL A+ R +
Sbjct: 132 GLRKTLCISSQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWVANQSYMEDVPVAERTRS 191
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL NY A++ ++ IM + +S +R+T+ST G+V I++ D+ +
Sbjct: 192 VTNVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDI-DV 250
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVN 193
LA+SLHAP ++R +++P + +PL +L+ A + Y +++++ + IEY+MLDGVN
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLAQLIAACQRYINKDGNESARKHVTIEYVMLDGVN 310
Query: 194 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253
D +HA Q+ +LL+ +NLIPFNP R SS +++ +FQK L + + T+R
Sbjct: 311 DSLEHAQQMIRLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIIAFQKALSDAGFV-CTIR 368
Query: 254 KQMGQDISGACGQLVVNLPDK 274
+ G DI ACGQLV + D+
Sbjct: 369 QTRGDDIDAACGQLVGQVADR 389
>gi|386311731|ref|YP_006007787.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica Y11]
gi|318606744|emb|CBY28242.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica Y11]
Length = 397
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 123 PEGDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRP 182
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 183 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 241
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E + A++ Y S ++ +EY+MLD +ND
Sbjct: 242 ALAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDS 301
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 302 TEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 359
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 360 RGDDIDAACGQLAGEVIDR 378
>gi|328866638|gb|EGG15021.1| putative ribosomal RNA large subunit methyltransferase N
[Dictyostelium fasciculatum]
Length = 432
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 155/254 (61%), Gaps = 18/254 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------SNIR 81
P R TLCISSQVGC C FC TGT NL++GEIV Q+ A L +N R
Sbjct: 150 PERNRGTLCISSQVGCTFQCTFCHTGTQKLVRNLTAGEIVSQVFTARSLMHDFGPTTNKR 209
Query: 82 ---NVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPG 137
NVV MG GEPL NY + +A++I+T G +S +IT+ST G+V I + D PG
Sbjct: 210 LLTNVVLMGQGEPLYNYRNVSKALKILTDGEGISISKSKITLSTSGVVPLIERLGQDFPG 269
Query: 138 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEE 196
+ LA+SLHA R +I+P + +P+E+L+ A + QK ++ +I IEY+ML G+ND +
Sbjct: 270 IGLAISLHASNNKTRSEIVPINQQWPIEELVQACINFTQKYTKDRITIEYVMLKGINDAK 329
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPI-GSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRK 254
Q A+ L +L F ++NLIPFNP G++ + + D++ SF +IL RG ++ TVR+
Sbjct: 330 QDAYNLIQLASQFPSLINLIPFNPWPGTI--YECTPIDQIESFARILERGG--LKVTVRQ 385
Query: 255 QMGQDISGACGQLV 268
G DI ACGQLV
Sbjct: 386 PRGTDILAACGQLV 399
>gi|451936487|ref|YP_007460341.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777410|gb|AGF48385.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 379
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/269 (42%), Positives = 155/269 (57%), Gaps = 27/269 (10%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLCISSQ GC + C FCATG GF NLS+ EIV QL A R N
Sbjct: 101 PEKNRRTLCISSQAGCAVNCAFCATGHQGFNRNLSANEIVGQLWSAQRSINLNLITGIED 160
Query: 80 -------------IRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV 125
I NVVFMGMGEPL NY ++++++++ + + S ++ITVST GIV
Sbjct: 161 LNNKNTIKSGNNLITNVVFMGMGEPLLNYKQVIKSIKLLLDVNAYGFSRRKITVSTSGIV 220
Query: 126 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFI 184
I+K D P ++LAVSLHA D+R +++P + +PL +L+ + K Y ++ + I
Sbjct: 221 PMIDKLARDCP-VSLAVSLHAANDDLRNKLVPINKKYPLNELIESCKRYITRSPRDFITF 279
Query: 185 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 244
EY ML GVND ++H +L L+ + +NLIPFN S S FR + +K++SF L
Sbjct: 280 EYCMLSGVNDTDKHIKELINLVSQIKCKINLIPFNSFES-SDFRAPTIEKINSFANKLLN 338
Query: 245 SYNIRTTVRKQMGQDISGACGQLVVNLPD 273
S I TTVRK G DI ACGQL N+ +
Sbjct: 339 S-GIMTTVRKTRGDDIHAACGQLAGNVKN 366
>gi|254513997|ref|ZP_05126058.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
gi|219676240|gb|EED32605.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
Length = 381
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 170/282 (60%), Gaps = 30/282 (10%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
GG VE V++ P G R+TLC+SSQVGC + C+FC+TG GF+ +LS+
Sbjct: 98 GGLVETVLI--------------PDGNRATLCVSSQVGCSLDCSFCSTGKQGFQRDLSAA 143
Query: 66 EIVEQL------VHASRLSNIR---NVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPK 115
EI+ Q+ A + N R NVV MGMGEPL N+ +V A+ + M L + +S +
Sbjct: 144 EIIGQVWLAINSYDAFKSGNGRVVTNVVMMGMGEPLLNFDNVVTAMDLMMDDLGYGISKR 203
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY- 174
R+T+ST G+V A++K +++ +LAVSLHAP ++R Q++P R +P+ +L+++ + Y
Sbjct: 204 RVTLSTSGVVPALDKL-AEVSEASLAVSLHAPNDELRNQLVPVNRRYPIAQLLDSARRYI 262
Query: 175 --QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 232
QK+ ++ + IEY ++ GVND+ A +L LL F +NLIPFNP + S + S
Sbjct: 263 DAQKDKKRVVTIEYTLMAGVNDQPDQARELATLLADFPCKINLIPFNPFPN-SGYERPSG 321
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
+ VS F ++L + + TVR G DI ACGQLV ++ D+
Sbjct: 322 NAVSRFWQVLVDAGFV-VTVRTTRGDDIDAACGQLVGDVVDR 362
>gi|397164379|ref|ZP_10487834.1| 23S rRNA methyltransferase [Enterobacter radicincitans DSM 16656]
gi|396093527|gb|EJI91082.1| 23S rRNA methyltransferase [Enterobacter radicincitans DSM 16656]
Length = 388
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGTRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + N+ Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLGAVRRYIGKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHELAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFCKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|410627452|ref|ZP_11338191.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola mesophila
KMM 241]
gi|410152944|dbj|GAC24960.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola mesophila
KMM 241]
Length = 380
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------ 79
P R+TLC+SSQVGC + C FC+T GF NLS EI+ Q+ + LSN
Sbjct: 105 PDADRATLCVSSQVGCALECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIGLSNDSAKRP 164
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ +M L F +S +R+T+ST G+V A++ D +
Sbjct: 165 ITNVVMMGMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDML-GDQIDV 223
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + +P+++ + ++ Y S Q K+ +EY+ML+G+ND
Sbjct: 224 ALAISLHAPDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDS 283
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AH+L K+L +NLIPFNP S + SS+ ++ F K+L SY + VRK
Sbjct: 284 TDQAHELAKVLADTPCKINLIPFNPYPG-SPYSRSSNSRIDRFAKVL-SSYGLMVVVRKT 341
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 342 RGDDIDAACGQLVGDVVDR 360
>gi|34556516|ref|NP_906331.1| ribosomal RNA large subunit methyltransferase N [Wolinella
succinogenes DSM 1740]
gi|81833710|sp|Q7MSW1.1|RLMN_WOLSU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|34482230|emb|CAE09231.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 359
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 158/245 (64%), Gaps = 12/245 (4%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR-----NVVF 85
G + T+C+SSQVGCK+GC+FC T GF NLS+GEIV Q+V RL+ + N+V+
Sbjct: 106 GEKYTICVSSQVGCKVGCSFCFTAKGGFVRNLSAGEIVYQIVALKRLNALAPEKRVNIVY 165
Query: 86 MGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
MGMGEPL+N+ L++A+RI++ L +S KR T+ST GI I K + G+ LA+SL
Sbjct: 166 MGMGEPLDNFENLIQAIRILSELDGLSISTKRQTISTSGIAPKIEKLGALDLGVQLAISL 225
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
HA ++R +++P +A+ + ++ A++ + +S++++ EY+++ GVND+E+ A L K
Sbjct: 226 HAVDDELRTRLIPMNKAYNIASIIEAVRRFPIDSRKRVMFEYLVIKGVNDDEKSAKTLLK 285
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL--RGSYNIRTTVRKQMGQDISG 262
LL + VNLI FNP S+F + K+ +FQK L RG + T+R+ G DIS
Sbjct: 286 LLNGIKSKVNLIYFNP-HEGSEFERPLESKMVAFQKYLTDRG---LLCTIRESKGIDISA 341
Query: 263 ACGQL 267
ACGQL
Sbjct: 342 ACGQL 346
>gi|350571836|ref|ZP_08940152.1| cfr family radical SAM enzyme [Neisseria wadsworthii 9715]
gi|349791021|gb|EGZ44914.1| cfr family radical SAM enzyme [Neisseria wadsworthii 9715]
Length = 362
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NLS+ EI+ QL A++ I
Sbjct: 96 PEAERGTLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPLANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEAMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA VR +I+P + +PL++LM A + Y K + + EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDAVRDEIVPLNKKYPLKELMAACQRYLVKAPRDFVTFEYVMLDGINDKPQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + SS+D + F++IL+ + + TVRK G
Sbjct: 275 AKELIELVKDVPCKFNLIPFNPFPN-SGYDRSSNDAIRVFKEILQEAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|417958218|ref|ZP_12601134.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
ATCC 51223]
gi|343967280|gb|EGV35529.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
ATCC 51223]
Length = 362
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPLANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR +I+P + +PL +LM A + Y K + I EY+MLDGVND+ QH
Sbjct: 215 LAVSLHASNDEVRDEIVPLNKKYPLRELMAACQRYLVKAPRDFITFEYVMLDGVNDKPQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A++L +L++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 AYELIELVKDVPCKFNLIPFNPFPN-SGYERSSNENIRIFRDILQQA-GLVVTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|238758832|ref|ZP_04620005.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae
ATCC 35236]
gi|238702940|gb|EEP95484.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae
ATCC 35236]
Length = 398
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------SNIR- 81
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++ + IR
Sbjct: 124 PEGDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAVKATGIRP 183
Query: 82 --NVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R I+P R + +E + A++ Y S+ ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPTDDIRDDIVPINRKYNIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TEQAHQLAACLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|421565597|ref|ZP_16011370.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3081]
gi|433536930|ref|ZP_20493435.1| 23S rRNA methyltransferase [Neisseria meningitidis 77221]
gi|402344032|gb|EJU79174.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3081]
gi|432273866|gb|ELL28963.1| 23S rRNA methyltransferase [Neisseria meningitidis 77221]
Length = 364
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL+S EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTSAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVKDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|340362818|ref|ZP_08685184.1| cfr family radical SAM enzyme [Neisseria macacae ATCC 33926]
gi|339886976|gb|EGQ76579.1| cfr family radical SAM enzyme [Neisseria macacae ATCC 33926]
Length = 364
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFENVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDGVND+ QH
Sbjct: 215 LAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + S+++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVKDVPCKFNLIPFNPFPN-SGYERSTNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|255067157|ref|ZP_05319012.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256]
gi|255048525|gb|EET43989.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256]
Length = 364
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFENVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDGVND+ QH
Sbjct: 215 LAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + S+++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVKDVPCKFNLIPFNPFPN-SGYERSTNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|294785829|ref|ZP_06751117.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27]
gi|294487543|gb|EFG34905.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27]
Length = 358
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 155/273 (56%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++ G +E V++R+ S + R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDKGTIETVLLRHKDSKNR--------EIRNTLCVSSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++ +S
Sbjct: 138 NLSVSEILNQIYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDKFYNYLKNIRKVNVTLRQEKGSDIDGACGQL 349
>gi|238897947|ref|YP_002923627.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229465705|gb|ACQ67479.1| radical SAM domain protein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 393
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NLS EI+ Q+ A+++
Sbjct: 127 PESDRATLCVSSQVGCALECRFCSTAQQGFNRNLSVSEIIGQVWRAAKIIGSLKSKGQRP 186
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 187 ITNVVMMGMGEPLLNINNVVPAMAIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 245
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R +++P R + +E L+ A++ Y S Q ++ IEY+ML+ VND
Sbjct: 246 ALAISLHAPTDDIRNELVPINRKYNIETLLAAVRRYLTKSNANQGRVTIEYVMLNHVNDS 305
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL L+ +NLIP+NP R SS+ ++ F K+L Y+ T +RK
Sbjct: 306 LKQAHQLADCLKNTPCKINLIPWNPFPGADYGR-SSNSRIDRFAKVLM-QYDFTTIIRKT 363
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 364 RGNDIDAACGQLAGDVIDR 382
>gi|260913157|ref|ZP_05919639.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325]
gi|260632744|gb|EEX50913.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325]
Length = 391
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 117 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 176
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ +
Sbjct: 177 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDV 235
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 236 ALAISLHAPNDELRDEIVPINKKYNIKALIDSVNRYLSVSNANHGKVTIEYVMLDHVNDS 295
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y VRK
Sbjct: 296 VEHAHQLAQVLKNTPSKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIVRKT 353
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 354 RGDDIDAACGQLAGDVIDR 372
>gi|149375014|ref|ZP_01892787.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
gi|149360903|gb|EDM49354.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
Length = 370
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 163/286 (56%), Gaps = 29/286 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
M NG VE V++ P G R TLC+SSQ+GC + C FC+TG GF
Sbjct: 87 MRMDNGNSVETVLI--------------PDGERGTLCVSSQIGCSLDCTFCSTGKRGFNR 132
Query: 61 NLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAALVEAVRI-MTGLPF 110
NL++ EI+ Q+ A + I NVV MGMGEPL N+ +V+A+ + M L +
Sbjct: 133 NLTAAEIIGQVWVARKAFMPFEPGPDRPITNVVMMGMGEPLLNFDNVVDAMNLMMEDLAY 192
Query: 111 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+S +R+TVST G+V A++K ++ ++LA+SLHAP ++R Q++P + +P+ +L+ A
Sbjct: 193 GISKRRVTVSTSGVVPALDKL-GEVTDVSLAISLHAPNDELRNQLVPLNKKYPIAELLAA 251
Query: 171 LKEYQKN--SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 228
+ Y ++K IEY +++GVND+ +HA +L +L +NLIPFNP S FR
Sbjct: 252 TRRYLARLPDKRKATIEYTVIEGVNDQPEHARELAVVLRGLPCKINLIPFNPFPE-SDFR 310
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
S + FQ +L + I TVR G DI ACGQLV + D+
Sbjct: 311 RPSMNATRRFQSVLNEAGYI-ATVRTTRGDDIDAACGQLVGMVEDR 355
>gi|406875143|gb|EKD24975.1| hypothetical protein ACD_80C00142G0017 [uncultured bacterium (gcode
4)]
Length = 377
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/283 (40%), Positives = 161/283 (56%), Gaps = 20/283 (7%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ +G +EAVI+ Y K+N R TLCISSQVGC M C FC TG +GFK
Sbjct: 80 FETHDGYMIEAVII-YHRQDEKHNKNNEEKLNRITLCISSQVGCPMKCLFCVTGKLGFKR 138
Query: 61 NLSSGEIVEQLVHASR-------------LSNIRNVVFMGMGEPLNNYAALVEAVRIMTG 107
NL+ E++ Q++ A+ L +RNVVFMGMGEPL NY + +A+ IM
Sbjct: 139 NLTRDEMISQILFANNYIKKKFGKQDDGNLYCVRNVVFMGMGEPLLNYDNVKKAIEIMLR 198
Query: 108 LP--FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 165
F +S + IT+ST GI+ I K D + LA+SLHAP Q +R ++MP +A+PL
Sbjct: 199 QEAGFSLSRRHITISTCGIIPGIRKLIKDEIPVKLAISLHAPNQALRDKLMPLVKAYPLI 258
Query: 166 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS 225
L A+ +Y K + ++F EYIM+ + D Q A +L ++L VNLIP+N +++
Sbjct: 259 DLTKAISDYVKATDNRVFYEYIMIKNMTDTPQLAKELVEMLRRKLAHVNLIPYNTNPAIN 318
Query: 226 QFRTSSDDK-VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
T SD K +++F+KIL + TVR MG+ ACGQL
Sbjct: 319 --LTESDAKTINAFKKILEEG-GLTVTVRDSMGRKTKWACGQL 358
>gi|345875081|ref|ZP_08826877.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
LMG 5135]
gi|343969508|gb|EGV37720.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
LMG 5135]
Length = 362
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPLANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR +I+P + +PL +LM A + Y K + I EY+MLDGVND+ QH
Sbjct: 215 LAVSLHASNDEVRDEIVPLNKKYPLRELMAACQRYLVKAPRDFITFEYVMLDGVNDKPQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A++L +L++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 AYELIELVKDVPCKFNLIPFNPFPN-SGYERSSNENIRIFRDILQQA-GLVVTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|423121604|ref|ZP_17109288.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5246]
gi|376393983|gb|EHT06637.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5246]
Length = 388
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E +N+++ Y S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHELAALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|91775976|ref|YP_545732.1| hypothetical protein Mfla_1623 [Methylobacillus flagellatus KT]
gi|123078840|sp|Q1H0U6.1|RLMN_METFK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91709963|gb|ABE49891.1| 23S rRNA m(2)A-2503 methyltransferase [Methylobacillus flagellatus
KT]
Length = 362
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 153/256 (59%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLC+SSQVGC + C FC+TG GF NLS EI+ QL A++ I
Sbjct: 96 PEDDRGTLCVSSQVGCALDCTFCSTGRQGFNRNLSVSEIIGQLWVANKALGRDPKGDRII 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL N+ +V A+ IM + +S +R+T+ST G+V A+++ + P +
Sbjct: 156 SNVVMMGMGEPLANFDNVVAAMNIMLDDSAYGLSRRRVTLSTSGMVPAMDRLREECP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHAP +R +I+P R +P+ +LM A + Y +K + + EY+MLDGVND +H
Sbjct: 215 LAVSLHAPNDALRDEIVPINRKYPIAQLMAACQRYLEKAPRDFVTFEYVMLDGVNDTAEH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A QL +++ NLIPFNP + S + TS D + F+ IL + + TT RK G+
Sbjct: 275 ARQLLNIVQDVPCKFNLIPFNPFPN-SGYDTSKPDNIRRFRDILMQAGYVVTT-RKTRGE 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGKVQDK 348
>gi|421611209|ref|ZP_16052360.1| radical SAM domain protein [Rhodopirellula baltica SH28]
gi|408498023|gb|EKK02531.1| radical SAM domain protein [Rhodopirellula baltica SH28]
Length = 379
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 156/273 (57%), Gaps = 20/273 (7%)
Query: 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSN 61
+ ++G +E+VI+R + R+TLC+SSQ+GC C+FCATG MG N
Sbjct: 81 ETESGMLIESVILRIATG-------------RTTLCVSSQIGCAAACDFCATGKMGIAKN 127
Query: 62 LSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPK 115
L++ EI++Q+V A ++ + N+VFMGMGEPL+N + EA+ ++T F SP
Sbjct: 128 LATEEILDQVVQAGQILRGEDRRLSNIVFMGMGEPLHNEVNVTEAIELLTASDHFARSPS 187
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
+ VSTVG+ + + P LNLA+SLH+ Q R +I+P + L +L + + E Q
Sbjct: 188 TVLVSTVGVPAGMLRLAKRFPNLNLALSLHSADQTTREKIIPLGKKASLAQLHDTIHEIQ 247
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235
++ IEY+ML VND + A++L + +V VNLIP+N I + S +
Sbjct: 248 TIQDREFMIEYLMLRDVNDSAKDANRLIDWIGDLRVHVNLIPYNTIEASPHLHASPRPVI 307
Query: 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 268
SF IL+ S ++TTVR +G DI ACGQL+
Sbjct: 308 ESFADILKAS-GLKTTVRYSLGNDIEAACGQLI 339
>gi|206890968|ref|YP_002247985.1| radical SAM protein [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742906|gb|ACI21963.1| radical SAM enzyme, Cfr family [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 342
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 145/245 (59%), Gaps = 8/245 (3%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMG 87
R TLC+SSQVGC + C FC TG +G K NL + EIV+Q + S++ I N+VFMG
Sbjct: 101 RLTLCVSSQVGCMLKCKFCLTGKIGLKRNLKAWEIVDQYIQVSKIIQKENRKITNIVFMG 160
Query: 88 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
MGEPL N+ +VEA+ + L SP RIT+ST GI+ AI + P + LA+SL+A
Sbjct: 161 MGEPLLNFENVVEALWRLKDLIL-FSPSRITLSTAGIIPAIKELPYKAPAIKLAISLNAT 219
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
R +MP + +PL +L+ L++Y + +I EYI++ G+N E+ A++L +LL+
Sbjct: 220 DNKTRSYLMPINKKYPLHELIKTLRDYPLKPRHRITFEYILIKGINCSEKDAYRLSELLK 279
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+NLIPFNP +F D+++ +FQ+IL + +RK G DI ACGQL
Sbjct: 280 GIPSKINLIPFNPWEG-CEFERPEDNEILNFQEIL-AARGYSVFIRKSKGTDILAACGQL 337
Query: 268 VVNLP 272
P
Sbjct: 338 KALYP 342
>gi|404493665|ref|YP_006717771.1| ribosomal RNA large subunit methyltransferase N [Pelobacter
carbinolicus DSM 2380]
gi|123729427|sp|Q3A2Z4.1|RLMN_PELCD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|77545701|gb|ABA89263.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Pelobacter
carbinolicus DSM 2380]
Length = 371
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 156/240 (65%), Gaps = 12/240 (5%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL 92
R+TLCIS+QVGC MGC FC TG+ G NL+ GEIV Q+ A + N+V MGMGEPL
Sbjct: 109 RATLCISTQVGCAMGCVFCHTGSFGLVRNLTPGEIVNQVCAALADGPVNNIVLMGMGEPL 168
Query: 93 NNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 149
+N +V+A++I+ GL + SP+++T+ST G+V + + + +NLAVSL+A
Sbjct: 169 HNLDNVVKALQILYMPQGLDY--SPRKVTLSTAGLVPQMQELGKRV-RVNLAVSLNATTD 225
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
+VR ++MP + +PL++LM A ++Y +++++I EYI++ VND +Q A +L KLL
Sbjct: 226 EVRNRLMPVNQRYPLQQLMAACRQYPLHAKKRITFEYILIRDVNDSDQDARRLVKLLHGI 285
Query: 210 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL--RGSYNIRTTVRKQMGQDISGACGQL 267
+ VN+IPFN S S+FR +++++S FQ L G IR R GQDIS ACGQL
Sbjct: 286 KAKVNIIPFNE-HSASEFRAPTEERISRFQGYLLDHGMVAIR---RASKGQDISAACGQL 341
>gi|189426654|ref|YP_001953831.1| ribosomal RNA large subunit methyltransferase N [Geobacter lovleyi
SZ]
gi|189422913|gb|ACD97311.1| radical SAM enzyme, Cfr family [Geobacter lovleyi SZ]
Length = 351
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/279 (40%), Positives = 160/279 (57%), Gaps = 22/279 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G VE+VI+ P R+TLCISSQ GC M C FC TGT NL+
Sbjct: 89 EDGNAVESVII--------------PDEDRNTLCISSQAGCAMQCAFCLTGTFSLTRNLT 134
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVS 120
+ EIV Q++ R +RN+V MGMGEPL+N ++ A++IM GL Q+S +R+TVS
Sbjct: 135 TAEIVNQILAVQRDVEVRNIVMMGMGEPLHNLDNVIPALQIMAEDNGL--QLSSRRVTVS 192
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
T G+V + + ++ +NLAVSL+A ++R +IMP +A+P+ L+ ALK Y ++
Sbjct: 193 TCGLVPELERLGREV-TVNLAVSLNATTDELRDRIMPVNKAYPIATLLAALKNYPLPGRR 251
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
KI IEY++L G+ND + A +L +LL +NLIPFNP + FR S + +F K
Sbjct: 252 KITIEYVLLGGLNDTPEDAKRLVRLLSDIPCKINLIPFNP-HEGADFRPPSRAALDAFHK 310
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 279
L + R G DIS ACGQL L K S +S
Sbjct: 311 YLLDRH-FTVITRDSRGSDISAACGQLKGKLDRKPSQES 348
>gi|345858751|ref|ZP_08811131.1| radical SAM superfamily protein [Desulfosporosinus sp. OT]
gi|344328167|gb|EGW39565.1| radical SAM superfamily protein [Desulfosporosinus sp. OT]
Length = 357
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 161/274 (58%), Gaps = 25/274 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++ +E V+MR+ L ++C+++QVGC MGC+FCA+G + +LS
Sbjct: 89 KDDNLIETVLMRHKFGL--------------SVCVTTQVGCNMGCSFCASGLLTKIRDLS 134
Query: 64 SGEIVEQLV-------HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPK 115
SGEIVEQ++ A + +VV MG+GEP +N+ + +A+RI+ ++ K
Sbjct: 135 SGEIVEQIMKVQHHLDEAKLEERVSHVVVMGIGEPFDNFKNVADALRIIKDHKGLAIAGK 194
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
RITVST G+ I +F + +NLA+SLHAP ++R QIM RAFP+E+LM A+ Y
Sbjct: 195 RITVSTSGLADGIYEFTDNSLQVNLAISLHAPTNELRTQIMKINRAFPIEELMQAVDYYL 254
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL--ETFQVVVNLIPFNPIGSVSQFRTSSDD 233
K + ++I +EYI+L +ND +HA QL L+ + VNLIP+NP+ +Q++ S +
Sbjct: 255 KKTNRRITLEYILLKNLNDRREHALQLAALIGDKHHLTNVNLIPYNPVDEHNQYQRSEHE 314
Query: 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +F L+ I ++R + G DI ACGQL
Sbjct: 315 SMLAFYDTLKKQ-GINCSIRLEHGTDIDAACGQL 347
>gi|256832241|ref|YP_003160968.1| radical SAM enzyme, Cfr family [Jonesia denitrificans DSM 20603]
gi|256685772|gb|ACV08665.1| radical SAM enzyme, Cfr family [Jonesia denitrificans DSM 20603]
Length = 376
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 159/283 (56%), Gaps = 34/283 (12%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + RSTLC+SSQ GC M C FCATG MG NLS+
Sbjct: 109 DGIKIESVLMRYPT--------------RSTLCVSSQAGCGMACPFCATGQMGLTRNLST 154
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
EIVEQ+ A+R +++ N+VFMGMGEPL NY AL+ AVR F
Sbjct: 155 AEIVEQVRQAARALAQGEIPGGATHLNNLVFMGMGEPLANYKALMGAVRQFVAPSPQGFG 214
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V AINK + L LA+SLHAP ++R Q++P + +++ ++A
Sbjct: 215 LSARNITVSTVGLVPAINKLAKEGLPLTLALSLHAPDDELRSQLVPINTRWTVDEALDAA 274
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPI-GSVSQF 227
Y + +++ IEY ++ +ND A LG+ L V VN IP NP GS+ +
Sbjct: 275 YGYYDATGRRVSIEYALIKDMNDHAWRADLLGEKLNARGRGWVHVNPIPLNPTPGSI--W 332
Query: 228 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
S D F + LR S+NI TT+R G DI GACGQL
Sbjct: 333 TASDRDVEQEFVRRLR-SHNIPTTIRDTRGSDIDGACGQLAAE 374
>gi|34541648|ref|NP_906127.1| ribosomal RNA large subunit methyltransferase N [Porphyromonas
gingivalis W83]
gi|419971176|ref|ZP_14486641.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas gingivalis W50]
gi|81416860|sp|Q7MTB0.1|RLMN_PORGI RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|34397966|gb|AAQ67026.1| conserved hypothetical protein TIGR00048 [Porphyromonas gingivalis
W83]
gi|392609195|gb|EIW92011.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas gingivalis W50]
Length = 341
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 166/278 (59%), Gaps = 21/278 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
G FVE+V++ P G R+TLCISSQVGCKM C FC TG G+ NLS+
Sbjct: 83 EGRFVESVLI--------------PEGDRATLCISSQVGCKMDCLFCMTGKQGWNGNLSA 128
Query: 65 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQV--SPKRITVSTV 122
EI+ Q+ + + N+V+MGMGEPL+N ++ ++ +T P+ + SPKRITVST+
Sbjct: 129 AEILNQIFSVDEAAELTNLVYMGMGEPLDNTDEVLRSIEALTE-PWGMGWSPKRITVSTI 187
Query: 123 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 182
G + +F ++ +LAVSLH+P + R ++MP +AFP+ + ++ ++ Y + Q+++
Sbjct: 188 G-AKGLERFLAE-SRCHLAVSLHSPFPEERRKLMPGEKAFPIMQTLDRIRAYDFSGQRRV 245
Query: 183 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 242
EYI+ DG+ND+ +HA +L +L +NLI F+ I +VS R+S ++ +F+K +
Sbjct: 246 SFEYIVFDGLNDDMRHADELAAILRGIPCRINLIRFHKIPAVS-LRSSDTARMEAFRKRM 304
Query: 243 RGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 280
S+ T+R G+DI ACG L + + KS+
Sbjct: 305 E-SHGFTCTIRASRGEDIFAACGMLSTSKAESSEEKSS 341
>gi|449137575|ref|ZP_21772901.1| radical SAM domain protein [Rhodopirellula europaea 6C]
gi|448884027|gb|EMB14534.1| radical SAM domain protein [Rhodopirellula europaea 6C]
Length = 379
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 156/273 (57%), Gaps = 20/273 (7%)
Query: 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSN 61
+ ++G +E+VI+R + R+TLC+SSQ+GC C+FCATG MG N
Sbjct: 81 ETESGMLIESVILRIATG-------------RTTLCVSSQIGCAAACDFCATGKMGIAKN 127
Query: 62 LSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPK 115
L++ EI++Q+V A ++ + N+VFMGMGEPL+N + EA+ ++T F SP
Sbjct: 128 LATEEILDQVVQAGQILRGEDRRLSNIVFMGMGEPLHNEVNVTEAIELLTAPDHFARSPS 187
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
+ VSTVG+ + + P LNLA+SLH+ Q R +I+P + L +L + + E Q
Sbjct: 188 TVLVSTVGVPAGMLRLAKRFPNLNLALSLHSADQTTREKIIPLGKKASLTQLHDTIDEIQ 247
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235
++ IEY+ML VND + A++L + +V VNLIP+N I + S +
Sbjct: 248 SIQDREFMIEYLMLRDVNDSTEDANRLIDWIGDLRVHVNLIPYNTIEASPHLHASPRPVI 307
Query: 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 268
SF IL+ S ++TTVR +G DI ACGQL+
Sbjct: 308 ESFADILKAS-GLKTTVRYSLGNDIEAACGQLI 339
>gi|421145204|ref|ZP_15605094.1| florfenicol resistance protein [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
gi|395488403|gb|EJG09268.1| florfenicol resistance protein [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
Length = 358
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 155/273 (56%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++ G +E V++R+ S + R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDKGTIETVLLRHKDSKNR--------EIRNTLCVSSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++ +S
Sbjct: 138 NLSVSEILNQIYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F V+NLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISETDANALADFIHQFDHVINLIPYNEVEGVEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|423115572|ref|ZP_17103263.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5245]
gi|376380962|gb|EHS93703.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5245]
Length = 388
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E +N+++ Y S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHELAALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|269103278|ref|ZP_06155975.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163176|gb|EEZ41672.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 372
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A++
Sbjct: 99 PDDDRATLCVSSQVGCALECKFCSTAQQGFNRNLCVSEIIGQVWRAAKEIGVQKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V + + ++ +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLLPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R QIMP + +E+ ++A++ Y ++ + ++ +EY++LD +ND+
Sbjct: 218 ALAISLHAPTDELRSQIMPINNRWNIEEFLDAVRRYVNSTNANRGRVTVEYVLLDHINDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA QL K+L+ +NLIPFNP S + S+ ++ F K L Y+I TVRK
Sbjct: 278 MEHARQLAKVLKDTPAKINLIPFNPYPG-SPYNKPSNSRIDRFMKTLM-EYDITVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|253574078|ref|ZP_04851420.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
gi|251846555|gb|EES74561.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
Length = 351
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 161/274 (58%), Gaps = 27/274 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
Q+G +E V+MR+ L ++C+++QVGC +GC+FCA+G + +L+
Sbjct: 86 QDGNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKKSRDLT 131
Query: 64 SGEIVEQLV----HASRL---SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVS 113
SGEIVEQ++ H R + ++V MG+GEP +NY + + +R++ GL +
Sbjct: 132 SGEIVEQVMKVQMHLDRQGKGERVSHIVVMGIGEPFDNYDNMADFLRVIQDPKGLA--IG 189
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
P+ ITVST G+ I +F +NLAVSLHAP ++R +IM +A P+EKLM A+
Sbjct: 190 PRHITVSTSGLADKIIEFADSDLQVNLAVSLHAPNNELRTRIMKINKAIPIEKLMAAIDY 249
Query: 174 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDD 233
Y + + +++ IEYI+L GVND +HA +L LL V VNLIP+NP+ SQ++ S
Sbjct: 250 YLERTNRRLTIEYILLKGVNDGTEHAQELADLLGDRFVNVNLIPYNPVDEHSQYQRSEQK 309
Query: 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V +F L+ + +VR + G DI ACGQL
Sbjct: 310 SVLAFYDALK-KRGLSVSVRLEHGADIDAACGQL 342
>gi|261401249|ref|ZP_05987374.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
gi|269208732|gb|EEZ75187.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
Length = 364
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 155/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V ++ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTSLSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
AH+L L++ NLIPFNP + S + SS + + F+ IL+ + + TVRK G
Sbjct: 275 AHELINLVKDVPCKFNLIPFNPFPN-SGYERSSKENIRVFKDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|294783089|ref|ZP_06748413.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA]
gi|294479967|gb|EFG27744.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA]
Length = 358
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/273 (39%), Positives = 155/273 (56%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDKGTIETVLLRHRDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQGGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R ++ N+VFMGMGEPL N L A+ I++ +S
Sbjct: 138 NLSVSEILNQVYTVERRLRKKDESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST GIV I K + + LAVSLH+ + + R QI+P + FPLE L L EY
Sbjct: 198 RKITISTSGIVSGIEKILLEKIPIELAVSLHSAINEKRDQIIPINKNFPLEDLSAVLVEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISEVDANALADFIHQFDHVVNLIPYNEVEGVEHKRPSM-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDRFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|289548506|ref|YP_003473494.1| radical SAM enzyme, Cfr family [Thermocrinis albus DSM 14484]
gi|289182123|gb|ADC89367.1| radical SAM enzyme, Cfr family [Thermocrinis albus DSM 14484]
Length = 347
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 153/240 (63%), Gaps = 9/240 (3%)
Query: 35 TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPL 92
TLC+SSQVGC +GC+FCAT G NL + EI++Q + + S IRNVVFMGMGEPL
Sbjct: 100 TLCVSSQVGCAVGCSFCATARDGLLRNLRTEEIIDQFIQVQKDSPQRIRNVVFMGMGEPL 159
Query: 93 NNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSD--LPGLNLAVSLHAPVQ 149
NY + +AV++M + +S +R++VST GI+ + K D + LNLAVS++AP Q
Sbjct: 160 ANYENVRKAVKVMISPWGLDLSKRRVSVSTSGIISQLKKMAQDPVMRELNLAVSINAPSQ 219
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE-- 207
++R +IMP ++ PL +LM L +Y ++I +EY++++ VNDE +HA QL +LL+
Sbjct: 220 ELRERIMPISKTNPLHELMEVLYQYPYPPDRRIMLEYVLIEKVNDEPEHALQLAQLLKGN 279
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ VNLIP+NP + +R ++V FQKIL + I T VR G + GACGQL
Sbjct: 280 PKKFKVNLIPYNPDPELP-YRRPPLERVYRFQKILWDN-GISTFVRFSKGVQVFGACGQL 337
>gi|402814305|ref|ZP_10863899.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
alvei DSM 29]
gi|402508152|gb|EJW18673.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
alvei DSM 29]
Length = 360
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 167/276 (60%), Gaps = 27/276 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
Q+G +E V+M++ L ++C+++QVGC +GC+FCA+G + +LS
Sbjct: 86 QDGNLIETVLMKHKFGL--------------SVCVTTQVGCNIGCSFCASGLLAKSRDLS 131
Query: 64 SGEIVEQLV----HASRLSN---IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPK 115
SGEIVEQ++ H + + ++V MG+GEP +N+ ++ +R++T + +
Sbjct: 132 SGEIVEQIMKVQHHLDEMGQGDLVSHIVVMGIGEPFDNFENIINFLRVVTDHKGLAIGAR 191
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
RITVST G+ + I F +NLA+SLHAP ++R +IM RA P+ K+M A++ +
Sbjct: 192 RITVSTSGLANKIKDFADINLRVNLALSLHAPNDELRTRIMKINRAIPIAKVMEAIQYFI 251
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF----QVVVNLIPFNPIGSVSQFRTSS 231
+ Q++ +EYI+L VND+++HA +L KL++ + +V VNLIP+NP+ SQ++ S
Sbjct: 252 NTTNQRVTLEYILLRDVNDQQEHALELVKLIQEWNMQDEVNVNLIPYNPVDEHSQYQRSE 311
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ + F +++ + NI +VR + G DI ACGQL
Sbjct: 312 QESIRGFYDVMKKN-NISCSVRLEHGTDIDAACGQL 346
>gi|255321140|ref|ZP_05362306.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
gi|262380171|ref|ZP_06073326.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens SH164]
gi|421464220|ref|ZP_15912910.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter radioresistens
WC-A-157]
gi|255301694|gb|EET80945.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
gi|262298365|gb|EEY86279.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens SH164]
gi|400204973|gb|EJO35954.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter radioresistens
WC-A-157]
Length = 411
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 162/261 (62%), Gaps = 20/261 (7%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSN 79
G R TLCISSQVGC + C+FC+TG GF+ +L+ EI+ QL A+ R +
Sbjct: 132 GLRKTLCISSQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWVANQSYMEDVPVAERTRS 191
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL NY A++ ++ IM + +S +R+T+ST G+V I++ D+ +
Sbjct: 192 VTNVVMMGMGEPLLNYDAVLSSMYIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDI-DV 250
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVN 193
LA+SLHAP ++R +++P + +PL +L+ A + Y +++++ + IEY+MLDGVN
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLAQLIAACQRYINKDGNESARKHVTIEYVMLDGVN 310
Query: 194 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253
D +HA Q+ +LL+ +NLIPFNP R SS +++ +FQK L + + T+R
Sbjct: 311 DSLEHAQQMIRLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIIAFQKALSDAGFV-CTIR 368
Query: 254 KQMGQDISGACGQLVVNLPDK 274
+ G DI ACGQLV + D+
Sbjct: 369 QTRGDDIDAACGQLVGQVADR 389
>gi|238912645|ref|ZP_04656482.1| hypothetical protein SentesTe_16142 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 388
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K + +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGY-MIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|167753918|ref|ZP_02426045.1| hypothetical protein ALIPUT_02203 [Alistipes putredinis DSM 17216]
gi|167658543|gb|EDS02673.1| 23S rRNA m2A2503 methyltransferase [Alistipes putredinis DSM 17216]
Length = 344
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 146/241 (60%), Gaps = 6/241 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P G R+TLCISSQ GC+MGC FCATG G + +LS+ EI+ Q+ + NVVFMGM
Sbjct: 98 PDGDRATLCISSQAGCRMGCRFCATGRQGLQHSLSTNEILNQIESLPERERLTNVVFMGM 157
Query: 89 GEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEPL+N +L+ A+ ++T F SP RITVST G+ + +F + ++LAVSLH P
Sbjct: 158 GEPLDNLDSLLPALEVLTSAWGFGWSPTRITVSTAGVASRLERF-LEATQVHLAVSLHNP 216
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
R +IMP +A+P+ +++ L+ Y Q+++ EYI++ G+ND +H +L +LL+
Sbjct: 217 FPHERAEIMPIEKAWPIREVVEILRRYDFTHQRRVSFEYIVMSGLNDSPRHIRELCRLLD 276
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVS-SFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
+ +NLI F+ I F S DD+ +F+ L I TT+R G+DI ACG
Sbjct: 277 GIKCRINLIRFHKIPGSPYF--SPDDRAMIAFRDALTAK-GIHTTIRTSRGEDIQAACGL 333
Query: 267 L 267
L
Sbjct: 334 L 334
>gi|320451516|ref|YP_004203612.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01]
gi|320151685|gb|ADW23063.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01]
Length = 349
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 162/284 (57%), Gaps = 26/284 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G EAV M Y++ R T+C+SS VGC GC FCATG +GF NL++
Sbjct: 78 DGKKTEAVYMPYEN--------------RKTVCLSSMVGCPAGCTFCATGALGFGRNLTA 123
Query: 65 GEIVEQLV---HASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKR 116
EI+ QL+ H +S +IRNVV MGMGEPL N +++A+R M GL +SP+R
Sbjct: 124 AEILSQLLAIAHHQGISPRDIRNVVLMGMGEPLLNLGNVLKAIRTMLHPKGL--AMSPRR 181
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
IT+STVGI I++ + G+ LA+SLHAP + R +I+P A + + +++ A++ Y
Sbjct: 182 ITLSTVGIPKGIHRLAEEDLGVRLALSLHAPDDETRRKIIPTAHRYSVGEILEAVRHYYA 241
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
+++++ EY +L G+ND A L KLL+ VNLIPFNP + + +
Sbjct: 242 RTKRRVTFEYTLLKGLNDHPWQARLLAKLLKGISAHVNLIPFNPWEG-APVEGTPKAGIL 300
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 280
+F + LR I T++R GQD+ ACGQL + P ++ T
Sbjct: 301 AFAEELR-RLGIPTSIRFSRGQDVGAACGQLALKAPKALTFTPT 343
>gi|188995920|ref|YP_001930172.1| ribosomal RNA large subunit methyltransferase N [Porphyromonas
gingivalis ATCC 33277]
gi|259491992|sp|B2RMI0.1|RLMN_PORG3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|188595600|dbj|BAG34575.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
33277]
Length = 352
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 166/278 (59%), Gaps = 21/278 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
G FVE+V++ P G R+TLCISSQVGCKM C FC TG G+ NLS+
Sbjct: 94 EGRFVESVLI--------------PEGDRATLCISSQVGCKMDCLFCMTGKQGWNGNLSA 139
Query: 65 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQV--SPKRITVSTV 122
EI+ Q+ + + N+V+MGMGEPL+N ++ ++ +T P+ + SPKRITVST+
Sbjct: 140 AEILNQIFSVDEAAELTNLVYMGMGEPLDNTDEVLRSIEALTE-PWGMGWSPKRITVSTI 198
Query: 123 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 182
G + +F ++ +LAVSLH+P + R ++MP +AFP+ + ++ ++ Y + Q+++
Sbjct: 199 G-AKGLERFLAE-SRCHLAVSLHSPFPEERRKLMPGEKAFPIMQTLDRIRAYDFSGQRRV 256
Query: 183 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 242
EYI+ DG+ND+ +HA +L +L +NLI F+ I +VS R+S ++ +F+K +
Sbjct: 257 SFEYIVFDGLNDDMRHADELAAILRGIPCRINLIRFHKIPAVS-LRSSDTARMEAFRKRM 315
Query: 243 RGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 280
S+ T+R G+DI ACG L + + KS+
Sbjct: 316 E-SHGYTCTIRASRGEDIFAACGMLSTSKAESSEEKSS 352
>gi|431741675|ref|ZP_19530578.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2039]
gi|430601407|gb|ELB39013.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2039]
Length = 355
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 161/284 (56%), Gaps = 25/284 (8%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + L ++C+++QVGC +GC FCA+G + +L++
Sbjct: 87 DKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASGLLKKNRDLTA 132
Query: 65 GEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
GEIV Q++ + RN VV MG+GEP +NY +++ + I+ + +
Sbjct: 133 GEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHIINDAKGLAIGARH 192
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
ITVST G+ H I +F ++ +NLA+SLHAP +VR IM R+FP+EKLM A+ EY +
Sbjct: 193 ITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLE 252
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDK 234
+ ++I EYIML+ VND +HA QL LL+ + VNLIP+NP+ Q+ S
Sbjct: 253 KTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVSERDQYSRSPKAD 312
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 278
V F +L+ + + +RK+ G DI+ ACGQL K +AK
Sbjct: 313 VLRFYDVLKKN-GVNCVIRKEHGTDINAACGQLRSKQMKKTAAK 355
>gi|332639899|pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
gi|332639900|pdb|3RFA|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
Length = 404
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI A GQL ++ D+
Sbjct: 347 RGDDIDAAXGQLAGDVIDR 365
>gi|431796136|ref|YP_007223040.1| 2-vinyl bacteriochlorophyllide hydratase [Echinicola vietnamensis
DSM 17526]
gi|430786901|gb|AGA77030.1| 23S rRNA m2A2503 methyltransferase [Echinicola vietnamensis DSM
17526]
Length = 352
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/246 (41%), Positives = 144/246 (58%), Gaps = 9/246 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN------IRN 82
P R T C+SSQVGC + CNFCAT + NL+ EI +Q+V + + N
Sbjct: 100 PTSKRITACVSSQVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIKDEAEKYFQRPLTN 159
Query: 83 VVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
+VFMGMGEPL NYA ++ A+ +T ++ +RIT+STVGI I K D NLA
Sbjct: 160 IVFMGMGEPLLNYANVISAIDKITAPEGLGMAARRITLSTVGIPKMIKKMADDEVKFNLA 219
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
+SLH+ + R ++MP P+E+L ++LK + +Q+K+ EY++ DG+ND+E+HA
Sbjct: 220 ISLHSAINSTRSRLMPINDKSPVEELADSLKYWYHKTQRKVTYEYVIWDGINDDEEHALA 279
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L K + VN+I +NPI +FR +S + V + +IL G I VRK GQDI
Sbjct: 280 LAKFCKHIPSKVNIIQYNPIDE-GEFRQASQEAVDMYVRILEGR-GIVAKVRKSRGQDID 337
Query: 262 GACGQL 267
ACGQL
Sbjct: 338 AACGQL 343
>gi|383764543|ref|YP_005443525.1| ribosomal RNA large subunit methyltransferase N [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381384811|dbj|BAM01628.1| ribosomal RNA large subunit methyltransferase N [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 386
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 163/279 (58%), Gaps = 32/279 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +EAV+M YD R TLCISSQ GC MGC FCAT G NL++
Sbjct: 80 DGQTIEAVLMLYDQ--------------RRTLCISSQAGCAMGCVFCATAQGGLARNLTT 125
Query: 65 GEIVEQLVHASRL---------------SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-L 108
GEIV Q+++ +R +++ N+V MGMGEPL+NY + +A+R +T
Sbjct: 126 GEIVAQVLYFARYLADPSLPPDTDVERPTHVTNIVLMGMGEPLHNYNNVWKALRRLTDPE 185
Query: 109 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 168
F + + IT+STVG+V I++ + + LAVSLHAP ++R Q+ P +A+P+++L+
Sbjct: 186 AFGLGARHITLSTVGLVPMIDRMADEGLQVGLAVSLHAPNDELRTQLTPINKAYPVDELL 245
Query: 169 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 228
A++ Y + +++ EY ++ GVND + A ++ L+ VNLIP NP+ S F+
Sbjct: 246 AAVRRYVAKTNRRVTFEYALMAGVNDSPELAQEMAHKLQGILCHVNLIPLNPVPD-SPFQ 304
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+SD++ F +ILR + I TT+R + G +I+ CGQL
Sbjct: 305 PTSDEETERFAQILRNA-GIPTTIRLRRGIEINAGCGQL 342
>gi|423109698|ref|ZP_17097393.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5243]
gi|376381266|gb|EHS94004.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5243]
Length = 388
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E +N+++ Y S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHELAALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|371775825|ref|ZP_09482147.1| ribosomal RNA large subunit methyltransferase N [Anaerophaga sp.
HS1]
Length = 345
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 146/240 (60%), Gaps = 4/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R TLC+SSQVGCKMGC FC TG GF+ L++GEI+ Q++ + + N+VFMGM
Sbjct: 95 PDKDRHTLCVSSQVGCKMGCLFCMTGKQGFQGQLTAGEILNQVLSLPESNLLTNIVFMGM 154
Query: 89 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEP++N +++++ I T SP+RITVSTVG+ A+ +F + +LA+SLH+P
Sbjct: 155 GEPMDNIDNVLQSLEIFTADWGLGWSPRRITVSTVGVEPAMRRFIEESEA-HLAISLHSP 213
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
+ R ++MP +P+E ++N L+EY Q+++ EYIM DGVND +H L KLL
Sbjct: 214 FNEERRRLMPVEHVYPVESIINTLREYDFGRQRRVSFEYIMFDGVNDTSKHIKGLTKLLN 273
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ VNLI F+ I S S +K+ F L + TT+RK G+DI ACG L
Sbjct: 274 GLRCRVNLIRFHAIPG-SPLNGSLPEKMKWFADELNKK-GLITTIRKSRGEDIFAACGLL 331
>gi|82703494|ref|YP_413060.1| hypothetical protein Nmul_A2379 [Nitrosospira multiformis ATCC
25196]
gi|123768149|sp|Q2Y6F3.1|RLMN_NITMU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|82411559|gb|ABB75668.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosospira multiformis
ATCC 25196]
Length = 365
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/260 (42%), Positives = 152/260 (58%), Gaps = 17/260 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS------------R 76
P R TLCISSQVGC + C FC+TG GF NL+ EI+ QL A+ R
Sbjct: 96 PETSRGTLCISSQVGCALACAFCSTGRQGFNRNLTVAEIIGQLWWANKALTETFTSEAGR 155
Query: 77 LSNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDL 135
I N+V MGMGEPL N+ +V ++ +M + +S +R+TVST GI+ A+++
Sbjct: 156 ERPITNIVMMGMGEPLTNFENVVTSLDLMLDDNAYGLSRRRVTVSTSGIIPAMDRLRERC 215
Query: 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVND 194
P + LAVSLHAP +R Q++P R +P+ +L+ A + Y Q + I EY+MLDGVND
Sbjct: 216 P-VALAVSLHAPNDALRDQLVPINRKYPIRELLGACERYLQSAPRDFITFEYVMLDGVND 274
Query: 195 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 254
A +L +L+ +NLIPFNP S FR SS + VS F+ +L + + TTVRK
Sbjct: 275 SVAQARELVQLVRDIPCKLNLIPFNPFPD-SGFRRSSANAVSRFRDVLMEA-GLVTTVRK 332
Query: 255 QMGQDISGACGQLVVNLPDK 274
G DI+ ACGQL + DK
Sbjct: 333 TRGDDIAAACGQLAGKVLDK 352
>gi|329297584|ref|ZP_08254920.1| ribosomal RNA large subunit methyltransferase N [Plautia stali
symbiont]
Length = 376
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 102 PEADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 161
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 162 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 220
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 195
LA+SLHAP +R I+P + + +E + A+K Y + N+ Q ++ IEY+MLD VND
Sbjct: 221 ALAISLHAPNDTIRDDIVPINKKYNIEAFLAAVKRYIGKSNANQGRVTIEYVMLDHVNDS 280
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 281 TEHAHELAALLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 338
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 339 RGDDIDAACGQLAGDVIDR 357
>gi|418531067|ref|ZP_13096986.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni ATCC
11996]
gi|371451776|gb|EHN64809.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni ATCC
11996]
Length = 373
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/265 (42%), Positives = 157/265 (59%), Gaps = 19/265 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN---- 79
P R TLC+SSQ GC +GC FC+TG GF NL++GEI+ QL +A R
Sbjct: 96 PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLNTGEILAQLWYAEHSLRKRFGTEDRI 155
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY+ALV A+R+M + +S +R+TVST G+V +++ D +
Sbjct: 156 ISNVVMMGMGEPLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDC-AV 214
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P + +P+ +L++A + Y + + + I EY MLDGVND+ +
Sbjct: 215 ALAVSLHAPNDPLRDNLVPLNKKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPE 274
Query: 198 HAHQLGKLLET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL +L+ NLIPFNP + R+ S +V+ F +L + I TTV
Sbjct: 275 HARQLIELVRARGDGRSWCKFNLIPFNPFPASGLLRSPS-ARVTEFAALLSNA-GIVTTV 332
Query: 253 RKQMGQDISGACGQLVVNLPDKISA 277
RK G DI ACGQL ++ D+ A
Sbjct: 333 RKTRGDDIDAACGQLAGDVKDRTRA 357
>gi|270156690|ref|ZP_06185347.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
gi|289164863|ref|YP_003455001.1| Fe-S containing enzyme [Legionella longbeachae NSW150]
gi|269988715|gb|EEZ94969.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
gi|288858036|emb|CBJ11896.1| putative Fe-S containing enzyme [Legionella longbeachae NSW150]
Length = 376
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 157/259 (60%), Gaps = 14/259 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSN-------- 79
P R TLC+SSQVGC + C+FC+T GF NL++ EI+ Q+ A R LS
Sbjct: 99 PEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLTTAEIIGQVWLAVRELSQSQGNHDKR 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ +V A+ IM + +S +R+T+ST G++ + + P +
Sbjct: 159 VTNVVMMGMGEPLLNFDNVVSAMDIMMDDFAYGLSKRRVTLSTSGVLPDLERLREVSP-V 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R +++P + +PL +LM K Y KN ++K+ EY+ML GVND+ +
Sbjct: 218 ALAVSLHAPNDELRNELVPINKKYPLAQLMALCKIYFKNEPRRKVTFEYVMLKGVNDQPE 277
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL KLL VNLIPFNP ++Q+ SS + + +F++ L ++ I T RK G
Sbjct: 278 HAIQLIKLLRNIPAKVNLIPFNPF-PMTQYERSSQETIDAFREKLM-AHGINTITRKTRG 335
Query: 258 QDISGACGQLVVNLPDKIS 276
DI ACGQL + D+ +
Sbjct: 336 DDIDAACGQLAGEVKDRTT 354
>gi|375262232|ref|YP_005021402.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
KCTC 1686]
gi|397659355|ref|YP_006500057.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
E718]
gi|402844577|ref|ZP_10892929.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. OBRC7]
gi|421726692|ref|ZP_16165861.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
M5al]
gi|423104272|ref|ZP_17091974.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5242]
gi|423125188|ref|ZP_17112867.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5250]
gi|365911710|gb|AEX07163.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
KCTC 1686]
gi|376384135|gb|EHS96861.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5242]
gi|376399439|gb|EHT12054.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5250]
gi|394347547|gb|AFN33668.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
E718]
gi|402273534|gb|EJU22731.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. OBRC7]
gi|410372419|gb|EKP27131.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
M5al]
Length = 388
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E +N+++ Y S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHELAALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|304387385|ref|ZP_07369577.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091]
gi|304338636|gb|EFM04754.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091]
Length = 364
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L+ NLIPFNP + S++ SS++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVTDVPCKFNLIPFNPFPN-SRYERSSNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|325577793|ref|ZP_08148068.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC
33392]
gi|325160538|gb|EGC72664.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC
33392]
Length = 382
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 107 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 166
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ D +
Sbjct: 167 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMLR-DKIDV 225
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + + LM+++ Y + S K+ IEY++LD VND
Sbjct: 226 ALAISLHAPNDELRDEIMPINKKYNIRMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDG 285
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL K+L+ +NLIP+NP + + SS+ +V FQK L Y VRK
Sbjct: 286 TEHAHQLAKVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVIVRKT 343
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 344 RGDDIDAACGQLAGDVIDR 362
>gi|385855368|ref|YP_005901881.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240355]
gi|325204309|gb|ADY99762.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240355]
Length = 364
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 155/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL+S EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTSAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L+ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVTDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|78188796|ref|YP_379134.1| hypothetical protein Cag_0825 [Chlorobium chlorochromatii CaD3]
gi|123770876|sp|Q3ASD4.1|RLMN_CHLCH RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|78170995|gb|ABB28091.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium chlorochromatii
CaD3]
Length = 366
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 148/249 (59%), Gaps = 10/249 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS-----NIRNV 83
P R T C+SSQ GC M C FCATGTMG + NLS+GEI EQL + L+ I NV
Sbjct: 112 PAEERMTACLSSQAGCPMQCTFCATGTMGLQRNLSAGEIWEQLYALNGLALQEGKTITNV 171
Query: 84 VFMGMGEPLNNYAALVEAVRIMTGLPF--QVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
VFMGMGEPL N ++EA+ M+ + +S ++IT+STVGIV I + LA
Sbjct: 172 VFMGMGEPLLNTDNVLEAIATMSSRNYNLSLSQRKITISTVGIVPEIERLSRSGLKTKLA 231
Query: 142 VSLHAPVQDVRCQIMP-AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAH 200
VSLH+ Q+VR Q+MP AA +PL L +L+ Y K + + I I Y+ML+GVND ++ AH
Sbjct: 232 VSLHSARQEVRQQLMPIAAERYPLPLLSKSLEAYSKATGEAITIVYMMLNGVNDSKEDAH 291
Query: 201 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
L + F +NLI +NPI ++ +F + + + + FQ L TVRK G +
Sbjct: 292 LLARYCRHFSCKINLIDYNPILTI-RFGSVQESQKNEFQAYLMAQ-KFHVTVRKSYGASV 349
Query: 261 SGACGQLVV 269
+ ACGQLV
Sbjct: 350 NAACGQLVT 358
>gi|449133516|ref|ZP_21769067.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
europaea 6C]
gi|448887798|gb|EMB18155.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
europaea 6C]
Length = 365
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 163/273 (59%), Gaps = 25/273 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+GG VE V++R GPR ++C+SSQVGC MGC FCA+G G NL+
Sbjct: 103 DGGEVECVLLR--------------DGPRRSICVSSQVGCAMGCVFCASGLDGVDRNLTG 148
Query: 65 GEIVEQLVH-ASRL---SNIRNVVFMGMGEPLNNYAALVEAV---RIMTGLPFQVSPKRI 117
GEI+EQ++ RL + ++V MGMGEPL N ++ A+ R GL +SP+RI
Sbjct: 149 GEILEQMLRLQQRLPADERLSHIVMMGMGEPLANLPGVLAALDVARSEDGL--GISPRRI 206
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+STVG+ AI+K + NLAVSLHAP ++R +++P R +E ++ A Y
Sbjct: 207 TISTVGLPPAIDKLAAAGIPYNLAVSLHAPNDELRSELVPVNRKIGIEPVLQAADRYFHA 266
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
S +++ EY++L G+ND ++HA QL ++L V++N+IP+NP+ + +RT S ++
Sbjct: 267 SGRRLTFEYVLLGGINDGDEHARQLSQILRGRSVMMNVIPYNPVAGLP-YRTPSGAAIAR 325
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
F+ IL S + R++ G +I+ ACGQL N
Sbjct: 326 FRAILE-SAGVNVNFRQRKGDEINAACGQLRRN 357
>gi|440713152|ref|ZP_20893756.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica SWK14]
gi|436442084|gb|ELP35262.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica SWK14]
Length = 371
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 163/273 (59%), Gaps = 25/273 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+GG VE V++R GPR ++C+SSQVGC MGC FCA+G G NL+
Sbjct: 109 DGGEVECVLLR--------------DGPRRSICVSSQVGCAMGCVFCASGLDGVDRNLTG 154
Query: 65 GEIVEQLVH-ASRL---SNIRNVVFMGMGEPLNNYAALVEAV---RIMTGLPFQVSPKRI 117
GEI+EQ++ RL + ++V MGMGEPL N ++ A+ R GL +SP+RI
Sbjct: 155 GEILEQMLRLQQRLPADERLSHIVMMGMGEPLANLPGVLAALDVARSEDGL--GISPRRI 212
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+STVG+ AI+K + NLAVSLHAP ++R +++P R +E ++ A Y
Sbjct: 213 TISTVGLPPAIDKLAAAGIPYNLAVSLHAPNDELRSELVPVNRKIGIEPVLQAADRYFHA 272
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
S +++ EY++L G+ND ++HA QL ++L V++N+IP+NP+ + +RT S ++
Sbjct: 273 SGRRLTFEYVLLGGINDGDEHARQLSQILRGRSVMMNVIPYNPVAGLP-YRTPSGAAIAR 331
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
F+ IL S + R++ G +I+ ACGQL N
Sbjct: 332 FRAILE-SAGVNVNFRQRKGDEINAACGQLRRN 363
>gi|218282588|ref|ZP_03488826.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989]
gi|218216459|gb|EEC89997.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989]
Length = 336
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 161/273 (58%), Gaps = 26/273 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+M +D ++C+SSQVGC MGC FCA+G K +L+S
Sbjct: 74 DGALLESVMMVFDYG--------------RSVCVSSQVGCNMGCAFCASGLTKKKRDLTS 119
Query: 65 GEIVEQLVHASR---LSNIR--NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 116
GE+V Q+++ + N+R ++V MG GEP +NY ++ + + GL + +
Sbjct: 120 GEMVAQVMYVQKELDKDNLRLSHIVVMGTGEPFDNYDNVMNFLATVNHDRGLG--IGSRH 177
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
IT+ST GIV I F ++ NLA+SLHAP ++R Q+MP A+PL++LM A++ Y K
Sbjct: 178 ITISTCGIVPRIYDFANEHTQYNLAISLHAPNDELRDQLMPVNHAYPLKELMEAIQYYGK 237
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
+ +++ EYI+L GVND +HA QL KLL VNLIP+N + F++ + D+
Sbjct: 238 ENNRRLTFEYILLKGVNDHPEHAKQLSKLLHGMNAYVNLIPYNAVDE-KGFKSVTHDEAM 296
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
F +L +Y +R T+RK+ G DI ACGQL +
Sbjct: 297 VFYDLLMKNY-VRCTIRKEHGNDIDAACGQLRI 328
>gi|153948736|ref|YP_001400164.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis IP 31758]
gi|170023536|ref|YP_001720041.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis YPIII]
gi|205829929|sp|A7FFY6.1|RLMN_YERP3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829933|sp|B1JS02.1|RLMN_YERPY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|152960231|gb|ABS47692.1| radical SAM domain protein, Cfr family [Yersinia pseudotuberculosis
IP 31758]
gi|169750070|gb|ACA67588.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis YPIII]
Length = 398
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PEADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|313203965|ref|YP_004042622.1| 23S rRNA m(2)a-2503 methyltransferase [Paludibacter propionicigenes
WB4]
gi|312443281|gb|ADQ79637.1| 23S rRNA m(2)A-2503 methyltransferase [Paludibacter propionicigenes
WB4]
Length = 345
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 162/265 (61%), Gaps = 18/265 (6%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+ G F+E+V + P R+TLC+SSQVGCKMGC FC TG F + L+
Sbjct: 86 EGGHFIESVYI--------------PDEDRATLCVSSQVGCKMGCMFCMTGKQSFTAQLT 131
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTV 122
+ EI+ Q++ + N+VFMGMGEP +N A++ ++ I+T + SP+RITVS++
Sbjct: 132 TTEILNQIMSIPEAETLTNLVFMGMGEPFDNTLAMLRSLEILTADYGYGWSPRRITVSSI 191
Query: 123 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 182
G++ + F + +LA+SLH+P + R ++MP ++FP+ K+++ ++++ + Q+++
Sbjct: 192 GLIPGMKVF-LERSNCHLAISLHSPFSEERLKLMPIEKSFPIAKVLDEIRKHDFSHQRRV 250
Query: 183 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 242
EYI+ DGVND +HA +L KLL VNLI F+ I + ++S+ +K++ F+ L
Sbjct: 251 SFEYILFDGVNDSMRHAVELVKLLRGIDCRVNLIRFHAIPGI-DLKSSTPEKMTFFRDYL 309
Query: 243 RGSYNIRTTVRKQMGQDISGACGQL 267
S + +T+R+ G+DI ACG L
Sbjct: 310 -TSNGVTSTIRRSRGEDIFAACGML 333
>gi|264679426|ref|YP_003279333.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
gi|262209939|gb|ACY34037.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
Length = 369
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/265 (42%), Positives = 157/265 (59%), Gaps = 19/265 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN---- 79
P R TLC+SSQ GC +GC FC+TG GF NL++GEI+ QL +A R
Sbjct: 92 PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLNTGEILAQLWYAEHSLRKRFGTEDRI 151
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY+ALV A+R+M + +S +R+TVST G+V +++ D +
Sbjct: 152 ISNVVMMGMGEPLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDC-AV 210
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P + +P+ +L++A + Y + + + I EY MLDGVND+ +
Sbjct: 211 ALAVSLHAPNDPLRDNLVPLNKKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPE 270
Query: 198 HAHQLGKLLET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL +L+ NLIPFNP + R+ S +V+ F +L + I TTV
Sbjct: 271 HARQLIELVRARGDGKSWCKFNLIPFNPFPASGLLRSPS-ARVTEFATLLSNA-GIVTTV 328
Query: 253 RKQMGQDISGACGQLVVNLPDKISA 277
RK G DI ACGQL ++ D+ A
Sbjct: 329 RKTRGDDIDAACGQLAGDVKDRTRA 353
>gi|379704816|ref|YP_005203275.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Streptococcus infantarius
subsp. infantarius CJ18]
gi|374681515|gb|AEZ61804.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantarius
subsp. infantarius CJ18]
Length = 366
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 164/278 (58%), Gaps = 29/278 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+MR L ++C++SQVGC +GC+FCA+G + + +L+S
Sbjct: 93 DGMLIETVLMRQHYGL--------------SVCVTSQVGCNIGCSFCASGLIKKQRDLTS 138
Query: 65 GEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEI Q++ + + R +VV MG+GEP +NY ++ VR + GL +
Sbjct: 139 GEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYDNVLRFVRTINNDNGLA--IGA 196
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ IT+ST G+ H I +F + +NLAVSLHAP ++R QIM R+FPLEKL A++ Y
Sbjct: 197 RHITISTSGLAHKIREFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEKLFTAIEYY 256
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + +++ EYIML+ VND ++A +L L + + + +NLIP+NP+ Q+R SS
Sbjct: 257 IETTNRRVTFEYIMLNDVNDSPENAQELADLTKKIRKLSYINLIPYNPVSEHDQYRRSSK 316
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
+ V++F +L+ + + VR++ G DI ACGQL N
Sbjct: 317 EHVAAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSN 353
>gi|417301677|ref|ZP_12088822.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica WH47]
gi|327542013|gb|EGF28512.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica WH47]
Length = 365
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 163/273 (59%), Gaps = 25/273 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+GG VE V++R GPR ++C+SSQVGC MGC FCA+G G NL+
Sbjct: 103 DGGEVECVLLR--------------DGPRRSICVSSQVGCAMGCVFCASGLDGVDRNLTG 148
Query: 65 GEIVEQLVH-ASRL---SNIRNVVFMGMGEPLNNYAALVEAV---RIMTGLPFQVSPKRI 117
GEI+EQ++ RL + ++V MGMGEPL N ++ A+ R GL +SP+RI
Sbjct: 149 GEILEQMLRLQQRLPADERLSHIVMMGMGEPLANLPGVLSALDVARSEDGL--GISPRRI 206
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+STVG+ AI+K + NLAVSLHAP ++R +++P R +E ++ A Y
Sbjct: 207 TISTVGLPPAIDKLAAAGIPYNLAVSLHAPNDELRSELVPVNRKIGIEPVLQAADRYFHA 266
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
S +++ EY++L G+ND ++HA QL ++L V++N+IP+NP+ + +RT S ++
Sbjct: 267 SGRRLTFEYVLLGGINDGDEHARQLSQILRGRSVMMNVIPYNPVAGLP-YRTPSGAAIAR 325
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
F+ IL S + R++ G +I+ ACGQL N
Sbjct: 326 FRAILE-SAGVNVNFRQRKGDEINAACGQLRRN 357
>gi|241758847|ref|ZP_04756960.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114]
gi|261380196|ref|ZP_05984769.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703]
gi|241321055|gb|EER57268.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114]
gi|284797045|gb|EFC52392.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703]
Length = 362
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + S+++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVKDVPCKFNLIPFNPFPN-SGYERSTNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|428302049|ref|YP_007140355.1| 23S rRNA m(2)A-2503 methyltransferase [Calothrix sp. PCC 6303]
gi|428238593|gb|AFZ04383.1| 23S rRNA m(2)A-2503 methyltransferase [Calothrix sp. PCC 6303]
Length = 365
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 150/240 (62%), Gaps = 5/240 (2%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGE 90
R T+C+S+QVGC M C+FCATG GFK NL+ EIV+Q+ V + N+VFMGMGE
Sbjct: 127 RLTVCVSTQVGCPMACDFCATGKGGFKRNLTRAEIVDQVLTVQEDFKERVSNIVFMGMGE 186
Query: 91 PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 150
PL N ++ A+ + + + +TVSTVGI I +F + LAVSLHAP Q
Sbjct: 187 PLLNVNHVLGAIHCLNK-DVGIGQRNLTVSTVGIRDRIRQFAQHHLQVTLAVSLHAPNQR 245
Query: 151 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 210
+R Q++P+A ++P+ LM +EY + + ++I EY++L GVND +HA +L +LL FQ
Sbjct: 246 LRQQLIPSANSYPIGDLMAECREYVEITGRRITFEYVLLAGVNDLPEHAAELARLLRGFQ 305
Query: 211 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
VNLIP+NPI V R S D++++F +IL+ + I +VR G + ACGQL VN
Sbjct: 306 NHVNLIPYNPINEVDYQRPES-DRINAFVQILQQQH-ITVSVRYSRGLEADAACGQLRVN 363
>gi|421612644|ref|ZP_16053746.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica SH28]
gi|408496597|gb|EKK01154.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica SH28]
Length = 371
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 163/273 (59%), Gaps = 25/273 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+GG VE V++R GPR ++C+SSQVGC MGC FCA+G G NL+
Sbjct: 109 DGGEVECVLLR--------------DGPRRSICVSSQVGCAMGCVFCASGLDGVDRNLTG 154
Query: 65 GEIVEQLVH-ASRL---SNIRNVVFMGMGEPLNNYAALVEAV---RIMTGLPFQVSPKRI 117
GEI+EQ++ RL + ++V MGMGEPL N ++ A+ R GL +SP+RI
Sbjct: 155 GEILEQMLRLQQRLPADERLSHIVMMGMGEPLANLPGVLSALDVARSEDGL--GISPRRI 212
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+STVG+ AI+K + NLAVSLHAP ++R +++P R +E ++ A Y
Sbjct: 213 TISTVGLPPAIDKLAAAGIPYNLAVSLHAPNDELRSELVPVNRKIGIEPVLQAADRYFHA 272
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
S +++ EY++L G+ND ++HA QL ++L V++N+IP+NP+ + +RT S ++
Sbjct: 273 SGRRLTFEYVLLGGINDGDEHARQLSQILRGRSVMMNVIPYNPVAGLP-YRTPSGAAIAR 331
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
F+ IL S + R++ G +I+ ACGQL N
Sbjct: 332 FRAILE-SAGVNVNFRQRKGDEINAACGQLRRN 363
>gi|385328576|ref|YP_005882879.1| hypothetical protein NMBB_1442 [Neisseria meningitidis alpha710]
gi|308389428|gb|ADO31748.1| hypothetical protein NMBB_1442 [Neisseria meningitidis alpha710]
Length = 364
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 155/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL+S EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTSAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L+ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVTDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|253996236|ref|YP_003048300.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8]
gi|253982915|gb|ACT47773.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8]
Length = 367
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 115/271 (42%), Positives = 158/271 (58%), Gaps = 21/271 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLC+SSQVGC + C FC+TG GF NLS EI+ Q+ A++
Sbjct: 95 PEDDRGTLCVSSQVGCALECTFCSTGRQGFNRNLSVAEIIGQVAIANQTLRQEPGYDMLP 154
Query: 80 -----IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHS 133
I NVV MGMGEPL NY +V A++IM + +S +R+T+ST G+V A+++
Sbjct: 155 ANDRIISNVVMMGMGEPLANYDNVVTAMQIMLDDSAYGLSRRRVTLSTSGMVPAMDRLKE 214
Query: 134 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGV 192
D P + LAVSLHAP +R I+P + +PL++LM A Y +K + + EY+MLDGV
Sbjct: 215 DCP-VALAVSLHAPNDALRDVIVPINKKYPLKELMAACNRYLEKAPRDFVTFEYVMLDGV 273
Query: 193 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
ND +HAHQL +L++ NLIPFNP + S + TS + V F+ IL + + TV
Sbjct: 274 NDTVEHAHQLLELVKNVSCKFNLIPFNPFPN-SGYDTSKPNHVRVFRDILMQAGYV-VTV 331
Query: 253 RKQMGQDISGACGQLVVNLPDKI--SAKSTP 281
RK G DI ACGQL + DK +A+ P
Sbjct: 332 RKTRGDDIDAACGQLAGKVLDKTKRTARHIP 362
>gi|375106264|ref|ZP_09752525.1| 23S rRNA m2A2503 methyltransferase [Burkholderiales bacterium
JOSHI_001]
gi|374666995|gb|EHR71780.1| 23S rRNA m2A2503 methyltransferase [Burkholderiales bacterium
JOSHI_001]
Length = 377
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 114/268 (42%), Positives = 154/268 (57%), Gaps = 20/268 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA---------SRLSN 79
P R TLCISSQ GC +GC FC+TG GF NLS+GEI+ QL HA S
Sbjct: 97 PEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLSTGEIIAQLWHAEHALRERFGSTERV 156
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NYAA++ A+R M + +S +R+TVST G+V I+ + P +
Sbjct: 157 ISNVVMMGMGEPLQNYAAVIPALRTMLDDHGYGLSRRRVTVSTSGMVAKIDTLRDECP-V 215
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R +++P + + LM A + Y + + I EY MLDGVND
Sbjct: 216 ALAVSLHAPTDELRNELVPLNKKDGIVALMQACERYLSAAPRDFITFEYCMLDGVNDTPA 275
Query: 198 HAHQLGKLLE------TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251
A QL L++ NLIPFNP S SS ++V++F K+L+ + TT
Sbjct: 276 QARQLLDLVQGRAGAPRVPCKFNLIPFNPF-PASGLTRSSPERVAAFAKVLQDG-GVVTT 333
Query: 252 VRKQMGQDISGACGQLVVNLPDKISAKS 279
+RK G DI+ ACGQL + D+ +A +
Sbjct: 334 IRKTRGDDIAAACGQLAGQVQDRTAAAT 361
>gi|422009346|ref|ZP_16356329.1| ribosomal RNA large subunit methyltransferase N [Providencia
rettgeri Dmel1]
gi|414093164|gb|EKT54836.1| ribosomal RNA large subunit methyltransferase N [Providencia
rettgeri Dmel1]
Length = 393
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 119 PEADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRP 178
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 179 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKL-GDMIDV 237
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R I+P + + +E +N++ Y S ++ +EY+MLD VND
Sbjct: 238 ALAISLHAPTDDIRDDIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHVNDS 297
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ ++ F K+L G Y T VRK
Sbjct: 298 VEQAHQLAECLKNTPSKINLIPWNPFPGAPYGR-SSNSRIDRFCKVLMG-YGFTTIVRKT 355
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 356 RGDDIDAACGQLAGDVIDR 374
>gi|261365781|ref|ZP_05978664.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996]
gi|288565687|gb|EFC87247.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996]
Length = 364
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + S+++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVKDVPCKFNLIPFNPFPN-SGYERSTNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|430840529|ref|ZP_19458453.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1007]
gi|430495016|gb|ELA71232.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1007]
Length = 355
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 161/284 (56%), Gaps = 25/284 (8%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + L ++C+++QVGC +GC FCA+G + +L++
Sbjct: 87 DKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASGLLKKNRDLTA 132
Query: 65 GEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
GEIV Q++ + RN VV MG+GEP +NY +++ + I+ + +
Sbjct: 133 GEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHIINDAKGLAIGARH 192
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
ITVST G+ H I +F ++ +NLA+SLHAP +VR IM R+FP+EKLM A+ EY +
Sbjct: 193 ITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLE 252
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDK 234
+ ++I EYIML+ VND +HA QL LL+ + VNLIP+NP+ Q+ S
Sbjct: 253 KTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVSEHDQYSRSPKAD 312
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 278
V F +L+ + + +RK+ G DI+ ACGQL K +AK
Sbjct: 313 VLRFYDVLKKN-GVNCVIRKEHGTDINAACGQLRSKQMKKTAAK 355
>gi|406920763|gb|EKD58772.1| YloN [uncultured bacterium]
Length = 378
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 151/257 (58%), Gaps = 20/257 (7%)
Query: 27 PRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV----------HASR 76
P+PG + CIS QVGC MGC FCATG MGFK NL++ EI +Q++ H
Sbjct: 123 PKPGTWSA--CISCQVGCAMGCRFCATGKMGFKRNLTAEEITDQVLFWKQYLKKNFHNIE 180
Query: 77 LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDL 135
+++N+V+MGMGEP NN+ + E++RI+T F + ++VST GIV I K ++
Sbjct: 181 NCDVKNIVYMGMGEPFNNWPEVSESIRILTDEKMFGFGSRSLSVSTSGIVSGIKKMANEF 240
Query: 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDE 195
P +NLA+SLH + R MP + LE L AL+EY + +++K+F+EYIMLDGVND
Sbjct: 241 PQVNLAISLHFASDEKRSHYMPVNKKDDLESLKKALQEYFQVTKRKVFLEYIMLDGVNDT 300
Query: 196 EQHAHQLGKLL----ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251
A +L + + T + VNLI +N + Q SS + +F+ L Y + T
Sbjct: 301 ALDAKKLSEFIYSIGHTQLLHVNLIRYNT--TSEQLVPSSKTRTQNFKAELE-KYRVNAT 357
Query: 252 VRKQMGQDISGACGQLV 268
+RK +G++I ACGQL
Sbjct: 358 IRKSLGEEIKAACGQLA 374
>gi|291327220|ref|ZP_06127407.2| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
gi|291311232|gb|EFE51685.1| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
Length = 426
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 152 PEADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRP 211
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 212 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKL-GDMIDV 270
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R I+P + + +E +N++ Y S ++ +EY+MLD VND
Sbjct: 271 ALAISLHAPTDDIRDDIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHVNDS 330
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ ++ F K+L G Y T VRK
Sbjct: 331 VEQAHQLAECLKNTPSKINLIPWNPFPGAPYGR-SSNSRIDRFCKVLMG-YGFTTIVRKT 388
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 389 RGDDIDAACGQLAGDVIDR 407
>gi|297538107|ref|YP_003673876.1| radical SAM enzyme, Cfr family [Methylotenera versatilis 301]
gi|297257454|gb|ADI29299.1| radical SAM enzyme, Cfr family [Methylotenera versatilis 301]
Length = 374
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 116/262 (44%), Positives = 154/262 (58%), Gaps = 19/262 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR----------LS 78
P R TLCISSQVGC + C FC+TG GF NLS EI+ QL A++ LS
Sbjct: 102 PEDDRGTLCISSQVGCALECTFCSTGRQGFNRNLSVSEIIGQLAIANQSLRQESGYDLLS 161
Query: 79 N----IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHS 133
I NVV MGMGEPL NY +V A++IM + +S +R+T+ST G+V A+++
Sbjct: 162 ANDRIISNVVMMGMGEPLANYDNVVTAMQIMLDDNAYGLSRRRVTLSTSGMVPAMDRLKE 221
Query: 134 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGV 192
D P + LAVSLHAP +R I+P + +PL++LM A Y +K + + EY+MLDGV
Sbjct: 222 DCP-VALAVSLHAPNDALRDVIVPINKKYPLKELMAACNRYLEKAPRDFVTFEYVMLDGV 280
Query: 193 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
ND +HAHQL L+ NLIPFNP + S + TS + F+ IL + + TV
Sbjct: 281 NDTVEHAHQLLDLVRNVSCKFNLIPFNPFPN-SGYDTSKASHIRVFRDILMQAGYV-VTV 338
Query: 253 RKQMGQDISGACGQLVVNLPDK 274
RK G+DI ACGQL + DK
Sbjct: 339 RKTRGEDIDAACGQLAGKVLDK 360
>gi|118594986|ref|ZP_01552333.1| hypothetical protein MB2181_04920 [Methylophilales bacterium
HTCC2181]
gi|118440764|gb|EAV47391.1| hypothetical protein MB2181_04920 [Methylophilales bacterium
HTCC2181]
Length = 363
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 157/262 (59%), Gaps = 19/262 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----SNIR--- 81
P R TLCISSQVGC + C FC+TG GF NL+SGEIV QL A+++ +N R
Sbjct: 95 PETDRGTLCISSQVGCALECTFCSTGRQGFNRNLTSGEIVGQLWLANKMLREQANYRLLA 154
Query: 82 -------NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHS 133
NVV MGMGEPL NY +V A+ +M + +S +R+T+ST G++ AI+K
Sbjct: 155 HEDRIITNVVMMGMGEPLTNYNHVVHALEMMLDDHVYGLSRRRVTLSTSGLIPAIDKLRD 214
Query: 134 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGV 192
D P ++LA+SLHAP +R +I+P + +PL+ LM A Y +K + + EY+ML+GV
Sbjct: 215 DCP-VSLAISLHAPDDKLRDEIVPINKKYPLQDLMAACIRYIEKAPRDFVTFEYVMLEGV 273
Query: 193 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
ND A L KL++ NLIPFNP + S + SS +++F+++L + + TV
Sbjct: 274 NDSVDQAKALVKLVKNVPCKFNLIPFNPFPN-SGYLCSSRSVINAFKQVLMDA-GLVATV 331
Query: 253 RKQMGQDISGACGQLVVNLPDK 274
RK G DI ACGQL + DK
Sbjct: 332 RKTRGDDIDAACGQLAGQVQDK 353
>gi|32477801|ref|NP_870795.1| Fe-S oxidoreductase [Rhodopirellula baltica SH 1]
gi|81658686|sp|Q7UHU7.1|RLMN_RHOBA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|32448358|emb|CAD77872.1| conserved hypothetical protein-putative Fe-S-oxidoreductase
[Rhodopirellula baltica SH 1]
Length = 371
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 163/273 (59%), Gaps = 25/273 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+GG VE V++R GPR ++C+SSQVGC MGC FCA+G G NL+
Sbjct: 109 DGGEVECVLLR--------------DGPRRSICVSSQVGCAMGCVFCASGLDGVDRNLTG 154
Query: 65 GEIVEQLVH-ASRL---SNIRNVVFMGMGEPLNNYAALVEAV---RIMTGLPFQVSPKRI 117
GEI+EQ++ RL + ++V MGMGEPL N ++ A+ R GL +SP+RI
Sbjct: 155 GEILEQMLRLQQRLPADERLSHIVMMGMGEPLANLPGVLSALDVARSEDGL--GISPRRI 212
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+STVG+ AI+K + NLAVSLHAP ++R +++P R +E ++ A Y
Sbjct: 213 TISTVGLPPAIDKLAAAGIPYNLAVSLHAPNDELRSELVPVNRKIGIEPVLQAADRYFHA 272
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
S +++ EY++L G+ND ++HA QL ++L V++N+IP+NP+ + +RT S ++
Sbjct: 273 SGRRLTFEYVLLGGINDGDEHARQLSQILRGRSVMMNVIPYNPVAGLP-YRTPSGAAIAR 331
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
F+ IL S + R++ G +I+ ACGQL N
Sbjct: 332 FRAILE-SAGVNVNFRQRKGDEINAACGQLRRN 363
>gi|383934221|ref|ZP_09987663.1| 23S rRNA (adenine2503-C2)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
gi|383704677|dbj|GAB57754.1| 23S rRNA (adenine2503-C2)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
Length = 375
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 155/258 (60%), Gaps = 15/258 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R TLC+SSQVGC + C+FC+T GF NL+ EI+ Q+ ++L
Sbjct: 101 PEKDRRTLCVSSQVGCALDCSFCSTAQQGFNRNLTVAEIIGQVWRVAQLIGSYGDTGDKP 160
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N +V A+ +M F +S +R+T+ST G+V A++ + +
Sbjct: 161 VTNVVMMGMGEPLLNLNNVVPAMELMLEDFGFGLSKRRVTLSTSGVVPALDLLREKI-DV 219
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEE 196
LA+SLHAP ++R +++P R +P+E+ + A + Y NS+ K+ +EY+ML+GVND
Sbjct: 220 ALAISLHAPNNELRNELVPVNRKYPMEEFLAASRRYVANSKANDKVTVEYVMLEGVNDSM 279
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
+ AH+L + L+ +NLIPFNP S ++ SS+ ++ F K+L+ Y VRK
Sbjct: 280 EQAHELAQALKDTPSKINLIPFNPYPG-SPYKRSSNSRIDRFNKVLQ-EYGFTVIVRKTR 337
Query: 257 GQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 338 GDDIDAACGQLVGDVIDR 355
>gi|167470721|ref|ZP_02335425.1| radical SAM domain protein, Cfr family [Yersinia pestis FV-1]
Length = 319
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 45 PEADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRP 104
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 105 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 163
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND
Sbjct: 164 ALAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDS 223
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 224 TEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 281
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 282 RGDDIDAACGQLAGEVIDR 300
>gi|251799946|ref|YP_003014677.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
gi|247547572|gb|ACT04591.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
Length = 356
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 165/280 (58%), Gaps = 30/280 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ +G +E V+MR+ L ++C+++QVGC +GC+FCA+G +
Sbjct: 83 LKLDDGNLIETVMMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKKSR 128
Query: 61 NLSSGEIVEQLV-------HASRLSNIRNVVFMGMGEPLNNYAAL---VEAVRIMTGLPF 110
+L+SGEIVEQ++ + + + ++V MG+GEP +N+ L + V+ GL
Sbjct: 129 DLTSGEIVEQIMKIQLHLDESGQGEKVSHIVVMGIGEPFDNFIHLNDFLTTVKDHKGLA- 187
Query: 111 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+ P+ ITVST G+ I +F G+NLAVSLHAP ++R +IM RA P+EKLM+A
Sbjct: 188 -IGPRHITVSTSGLADKIREFADKDQGVNLAVSLHAPNNELRTRIMKINRAIPIEKLMDA 246
Query: 171 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ---VVVNLIPFNPIGSVSQF 227
+ Y + + ++I +EYI+L VND+ +HA +L +L+ + V VNLIP+NP+ SQ+
Sbjct: 247 IDYYLERTNRRITLEYILLKDVNDQPEHALELAELVGDRRRSLVNVNLIPYNPVDEHSQY 306
Query: 228 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ S +D + F L+ ++ +VR + G DI ACGQL
Sbjct: 307 QRSENDSIKGFYDTLKKQ-DVSVSVRLEHGADIDAACGQL 345
>gi|253988864|ref|YP_003040220.1| conserved hypothetical protein [Photorhabdus asymbiotica]
gi|253780314|emb|CAQ83475.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 392
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 118 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRP 177
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 178 ITNVVMMGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 236
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R I+P R + +E+ + ++ Y S Q ++ +EY+MLD +ND
Sbjct: 237 ALAISLHAPTDDIRDDIVPINRKYNIEQFLAGVRRYLAKSNANQGRVTVEYVMLDHINDS 296
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ ++ F K+L G Y T VRK
Sbjct: 297 VEQAHQLAECLKDTPSKINLIPWNPFPGAPYGR-SSNSRIDRFAKVLMG-YGFTTIVRKT 354
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 355 RGDDIDAACGQLAGDVIDR 373
>gi|238797961|ref|ZP_04641451.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
mollaretii ATCC 43969]
gi|238718166|gb|EEQ09992.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
mollaretii ATCC 43969]
Length = 398
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PEADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-DYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|22125249|ref|NP_668672.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
KIM10+]
gi|45442520|ref|NP_994059.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
biovar Microtus str. 91001]
gi|51597160|ref|YP_071351.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis IP 32953]
gi|108808316|ref|YP_652232.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Antiqua]
gi|108811419|ref|YP_647186.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Nepal516]
gi|145599499|ref|YP_001163575.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Pestoides F]
gi|149365342|ref|ZP_01887377.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125]
gi|162419386|ref|YP_001605027.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Angola]
gi|165926002|ref|ZP_02221834.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937119|ref|ZP_02225684.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008394|ref|ZP_02229292.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212301|ref|ZP_02238336.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399541|ref|ZP_02305065.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167421243|ref|ZP_02312996.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423347|ref|ZP_02315100.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|218929942|ref|YP_002347817.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
CO92]
gi|229838462|ref|ZP_04458621.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229895163|ref|ZP_04510339.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|229899029|ref|ZP_04514173.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229901676|ref|ZP_04516798.1| predicted enzyme [Yersinia pestis Nepal516]
gi|270489871|ref|ZP_06206945.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27]
gi|294504556|ref|YP_003568618.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003]
gi|384122853|ref|YP_005505473.1| hypothetical protein YPD4_2263 [Yersinia pestis D106004]
gi|384126880|ref|YP_005509494.1| hypothetical protein YPD8_2426 [Yersinia pestis D182038]
gi|384139297|ref|YP_005521999.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
A1122]
gi|384415515|ref|YP_005624877.1| hypothetical protein YPC_3072 [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420547914|ref|ZP_15045762.1| 23S rRNA methyltransferase [Yersinia pestis PY-01]
gi|420553237|ref|ZP_15050524.1| 23S rRNA methyltransferase [Yersinia pestis PY-02]
gi|420558806|ref|ZP_15055391.1| 23S rRNA methyltransferase [Yersinia pestis PY-03]
gi|420564253|ref|ZP_15060246.1| 23S rRNA methyltransferase [Yersinia pestis PY-04]
gi|420569287|ref|ZP_15064821.1| 23S rRNA methyltransferase [Yersinia pestis PY-05]
gi|420574936|ref|ZP_15069927.1| 23S rRNA methyltransferase [Yersinia pestis PY-06]
gi|420580291|ref|ZP_15074796.1| 23S rRNA methyltransferase [Yersinia pestis PY-07]
gi|420585612|ref|ZP_15079619.1| 23S rRNA methyltransferase [Yersinia pestis PY-08]
gi|420590733|ref|ZP_15084225.1| 23S rRNA methyltransferase [Yersinia pestis PY-09]
gi|420596105|ref|ZP_15089057.1| 23S rRNA methyltransferase [Yersinia pestis PY-10]
gi|420601770|ref|ZP_15094102.1| 23S rRNA methyltransferase [Yersinia pestis PY-11]
gi|420607217|ref|ZP_15099016.1| 23S rRNA methyltransferase [Yersinia pestis PY-12]
gi|420612600|ref|ZP_15103850.1| 23S rRNA methyltransferase [Yersinia pestis PY-13]
gi|420617967|ref|ZP_15108548.1| 23S rRNA methyltransferase [Yersinia pestis PY-14]
gi|420623265|ref|ZP_15113298.1| 23S rRNA methyltransferase [Yersinia pestis PY-15]
gi|420628346|ref|ZP_15117912.1| 23S rRNA methyltransferase [Yersinia pestis PY-16]
gi|420633483|ref|ZP_15122520.1| 23S rRNA methyltransferase [Yersinia pestis PY-19]
gi|420638685|ref|ZP_15127200.1| 23S rRNA methyltransferase [Yersinia pestis PY-25]
gi|420644177|ref|ZP_15132199.1| 23S rRNA methyltransferase [Yersinia pestis PY-29]
gi|420649442|ref|ZP_15136966.1| 23S rRNA methyltransferase [Yersinia pestis PY-32]
gi|420655077|ref|ZP_15142034.1| 23S rRNA methyltransferase [Yersinia pestis PY-34]
gi|420660569|ref|ZP_15146959.1| 23S rRNA methyltransferase [Yersinia pestis PY-36]
gi|420665879|ref|ZP_15151725.1| 23S rRNA methyltransferase [Yersinia pestis PY-42]
gi|420670752|ref|ZP_15156157.1| 23S rRNA methyltransferase [Yersinia pestis PY-45]
gi|420676101|ref|ZP_15161024.1| 23S rRNA methyltransferase [Yersinia pestis PY-46]
gi|420681706|ref|ZP_15166097.1| 23S rRNA methyltransferase [Yersinia pestis PY-47]
gi|420687023|ref|ZP_15170828.1| 23S rRNA methyltransferase [Yersinia pestis PY-48]
gi|420692221|ref|ZP_15175395.1| 23S rRNA methyltransferase [Yersinia pestis PY-52]
gi|420698002|ref|ZP_15180481.1| 23S rRNA methyltransferase [Yersinia pestis PY-53]
gi|420703757|ref|ZP_15185109.1| 23S rRNA methyltransferase [Yersinia pestis PY-54]
gi|420709236|ref|ZP_15189894.1| 23S rRNA methyltransferase [Yersinia pestis PY-55]
gi|420714667|ref|ZP_15194738.1| 23S rRNA methyltransferase [Yersinia pestis PY-56]
gi|420720168|ref|ZP_15199473.1| 23S rRNA methyltransferase [Yersinia pestis PY-58]
gi|420725655|ref|ZP_15204280.1| 23S rRNA methyltransferase [Yersinia pestis PY-59]
gi|420731264|ref|ZP_15209311.1| 23S rRNA methyltransferase [Yersinia pestis PY-60]
gi|420736304|ref|ZP_15213867.1| 23S rRNA methyltransferase [Yersinia pestis PY-61]
gi|420741747|ref|ZP_15218758.1| 23S rRNA methyltransferase [Yersinia pestis PY-63]
gi|420747419|ref|ZP_15223580.1| 23S rRNA methyltransferase [Yersinia pestis PY-64]
gi|420752907|ref|ZP_15228446.1| 23S rRNA methyltransferase [Yersinia pestis PY-65]
gi|420758597|ref|ZP_15233083.1| 23S rRNA methyltransferase [Yersinia pestis PY-66]
gi|420763949|ref|ZP_15237719.1| 23S rRNA methyltransferase [Yersinia pestis PY-71]
gi|420769173|ref|ZP_15242409.1| 23S rRNA methyltransferase [Yersinia pestis PY-72]
gi|420774163|ref|ZP_15246920.1| 23S rRNA methyltransferase [Yersinia pestis PY-76]
gi|420779767|ref|ZP_15251864.1| 23S rRNA methyltransferase [Yersinia pestis PY-88]
gi|420785349|ref|ZP_15256750.1| 23S rRNA methyltransferase [Yersinia pestis PY-89]
gi|420790521|ref|ZP_15261384.1| 23S rRNA methyltransferase [Yersinia pestis PY-90]
gi|420796038|ref|ZP_15266344.1| 23S rRNA methyltransferase [Yersinia pestis PY-91]
gi|420801097|ref|ZP_15270886.1| 23S rRNA methyltransferase [Yersinia pestis PY-92]
gi|420806465|ref|ZP_15275744.1| 23S rRNA methyltransferase [Yersinia pestis PY-93]
gi|420811813|ref|ZP_15280556.1| 23S rRNA methyltransferase [Yersinia pestis PY-94]
gi|420817334|ref|ZP_15285534.1| 23S rRNA methyltransferase [Yersinia pestis PY-95]
gi|420822646|ref|ZP_15290305.1| 23S rRNA methyltransferase [Yersinia pestis PY-96]
gi|420827729|ref|ZP_15294870.1| 23S rRNA methyltransferase [Yersinia pestis PY-98]
gi|420833420|ref|ZP_15300014.1| 23S rRNA methyltransferase [Yersinia pestis PY-99]
gi|420838284|ref|ZP_15304412.1| 23S rRNA methyltransferase [Yersinia pestis PY-100]
gi|420843472|ref|ZP_15309113.1| 23S rRNA methyltransferase [Yersinia pestis PY-101]
gi|420849131|ref|ZP_15314201.1| 23S rRNA methyltransferase [Yersinia pestis PY-102]
gi|420854747|ref|ZP_15318988.1| 23S rRNA methyltransferase [Yersinia pestis PY-103]
gi|420859989|ref|ZP_15323577.1| 23S rRNA methyltransferase [Yersinia pestis PY-113]
gi|421764386|ref|ZP_16201178.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
INS]
gi|81638860|sp|Q667Z6.1|RLMN_YERPS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123372276|sp|Q1C5I5.1|RLMN_YERPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123373337|sp|Q1CK94.1|RLMN_YERPN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123776892|sp|Q7CJM9.1|RLMN_YERPE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829931|sp|A9R805.1|RLMN_YERPG RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829932|sp|A4TMU0.1|RLMN_YERPP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|21958119|gb|AAM84923.1|AE013737_5 hypothetical protein y1350 [Yersinia pestis KIM10+]
gi|45437385|gb|AAS62936.1| Predicted Fe-S-cluster redox enzyme [Yersinia pestis biovar
Microtus str. 91001]
gi|51590442|emb|CAH22082.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108775067|gb|ABG17586.1| hypothetical protein YPN_1256 [Yersinia pestis Nepal516]
gi|108780229|gb|ABG14287.1| hypothetical protein YPA_2322 [Yersinia pestis Antiqua]
gi|115348553|emb|CAL21493.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145211195|gb|ABP40602.1| hypothetical protein YPDSF_2227 [Yersinia pestis Pestoides F]
gi|149291755|gb|EDM41829.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125]
gi|162352201|gb|ABX86149.1| radical SAM domain protein, Cfr family [Yersinia pestis Angola]
gi|165914982|gb|EDR33594.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922206|gb|EDR39383.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992776|gb|EDR45077.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166206232|gb|EDR50712.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960732|gb|EDR56753.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167052045|gb|EDR63453.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057517|gb|EDR67263.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229681605|gb|EEO77699.1| predicted enzyme [Yersinia pestis Nepal516]
gi|229687974|gb|EEO80046.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229694828|gb|EEO84875.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229701925|gb|EEO89948.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|262362449|gb|ACY59170.1| hypothetical protein YPD4_2263 [Yersinia pestis D106004]
gi|262366544|gb|ACY63101.1| hypothetical protein YPD8_2426 [Yersinia pestis D182038]
gi|270338375|gb|EFA49152.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27]
gi|294355015|gb|ADE65356.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003]
gi|320016019|gb|ADV99590.1| putative enzyme [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|342854426|gb|AEL72979.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
A1122]
gi|391424135|gb|EIQ86552.1| 23S rRNA methyltransferase [Yersinia pestis PY-01]
gi|391425019|gb|EIQ87338.1| 23S rRNA methyltransferase [Yersinia pestis PY-02]
gi|391425512|gb|EIQ87769.1| 23S rRNA methyltransferase [Yersinia pestis PY-03]
gi|391439181|gb|EIQ99861.1| 23S rRNA methyltransferase [Yersinia pestis PY-04]
gi|391440427|gb|EIR01001.1| 23S rRNA methyltransferase [Yersinia pestis PY-05]
gi|391443996|gb|EIR04261.1| 23S rRNA methyltransferase [Yersinia pestis PY-06]
gi|391455997|gb|EIR15063.1| 23S rRNA methyltransferase [Yersinia pestis PY-07]
gi|391456947|gb|EIR15927.1| 23S rRNA methyltransferase [Yersinia pestis PY-08]
gi|391459108|gb|EIR17914.1| 23S rRNA methyltransferase [Yersinia pestis PY-09]
gi|391472073|gb|EIR29570.1| 23S rRNA methyltransferase [Yersinia pestis PY-10]
gi|391473762|gb|EIR31109.1| 23S rRNA methyltransferase [Yersinia pestis PY-11]
gi|391474233|gb|EIR31538.1| 23S rRNA methyltransferase [Yersinia pestis PY-12]
gi|391488248|gb|EIR44114.1| 23S rRNA methyltransferase [Yersinia pestis PY-13]
gi|391489579|gb|EIR45312.1| 23S rRNA methyltransferase [Yersinia pestis PY-15]
gi|391490920|gb|EIR46527.1| 23S rRNA methyltransferase [Yersinia pestis PY-14]
gi|391504024|gb|EIR58157.1| 23S rRNA methyltransferase [Yersinia pestis PY-16]
gi|391504342|gb|EIR58442.1| 23S rRNA methyltransferase [Yersinia pestis PY-19]
gi|391509292|gb|EIR62932.1| 23S rRNA methyltransferase [Yersinia pestis PY-25]
gi|391519882|gb|EIR72482.1| 23S rRNA methyltransferase [Yersinia pestis PY-29]
gi|391521885|gb|EIR74316.1| 23S rRNA methyltransferase [Yersinia pestis PY-34]
gi|391522799|gb|EIR75160.1| 23S rRNA methyltransferase [Yersinia pestis PY-32]
gi|391534858|gb|EIR85994.1| 23S rRNA methyltransferase [Yersinia pestis PY-36]
gi|391537633|gb|EIR88510.1| 23S rRNA methyltransferase [Yersinia pestis PY-42]
gi|391539882|gb|EIR90569.1| 23S rRNA methyltransferase [Yersinia pestis PY-45]
gi|391552888|gb|EIS02273.1| 23S rRNA methyltransferase [Yersinia pestis PY-46]
gi|391553340|gb|EIS02672.1| 23S rRNA methyltransferase [Yersinia pestis PY-47]
gi|391554150|gb|EIS03421.1| 23S rRNA methyltransferase [Yersinia pestis PY-48]
gi|391568010|gb|EIS15796.1| 23S rRNA methyltransferase [Yersinia pestis PY-52]
gi|391569159|gb|EIS16786.1| 23S rRNA methyltransferase [Yersinia pestis PY-53]
gi|391574500|gb|EIS21377.1| 23S rRNA methyltransferase [Yersinia pestis PY-54]
gi|391582045|gb|EIS27857.1| 23S rRNA methyltransferase [Yersinia pestis PY-55]
gi|391584662|gb|EIS30162.1| 23S rRNA methyltransferase [Yersinia pestis PY-56]
gi|391595172|gb|EIS39246.1| 23S rRNA methyltransferase [Yersinia pestis PY-58]
gi|391597920|gb|EIS41696.1| 23S rRNA methyltransferase [Yersinia pestis PY-60]
gi|391599297|gb|EIS42930.1| 23S rRNA methyltransferase [Yersinia pestis PY-59]
gi|391612272|gb|EIS54362.1| 23S rRNA methyltransferase [Yersinia pestis PY-61]
gi|391612918|gb|EIS54939.1| 23S rRNA methyltransferase [Yersinia pestis PY-63]
gi|391616598|gb|EIS58240.1| 23S rRNA methyltransferase [Yersinia pestis PY-64]
gi|391625264|gb|EIS65791.1| 23S rRNA methyltransferase [Yersinia pestis PY-65]
gi|391631126|gb|EIS70793.1| 23S rRNA methyltransferase [Yersinia pestis PY-66]
gi|391636046|gb|EIS75126.1| 23S rRNA methyltransferase [Yersinia pestis PY-71]
gi|391638261|gb|EIS77086.1| 23S rRNA methyltransferase [Yersinia pestis PY-72]
gi|391648033|gb|EIS85598.1| 23S rRNA methyltransferase [Yersinia pestis PY-76]
gi|391651846|gb|EIS88973.1| 23S rRNA methyltransferase [Yersinia pestis PY-88]
gi|391656655|gb|EIS93258.1| 23S rRNA methyltransferase [Yersinia pestis PY-89]
gi|391661089|gb|EIS97170.1| 23S rRNA methyltransferase [Yersinia pestis PY-90]
gi|391668940|gb|EIT04128.1| 23S rRNA methyltransferase [Yersinia pestis PY-91]
gi|391678150|gb|EIT12394.1| 23S rRNA methyltransferase [Yersinia pestis PY-93]
gi|391679120|gb|EIT13281.1| 23S rRNA methyltransferase [Yersinia pestis PY-92]
gi|391679830|gb|EIT13928.1| 23S rRNA methyltransferase [Yersinia pestis PY-94]
gi|391692086|gb|EIT24956.1| 23S rRNA methyltransferase [Yersinia pestis PY-95]
gi|391694975|gb|EIT27589.1| 23S rRNA methyltransferase [Yersinia pestis PY-96]
gi|391696750|gb|EIT29203.1| 23S rRNA methyltransferase [Yersinia pestis PY-98]
gi|391708412|gb|EIT39673.1| 23S rRNA methyltransferase [Yersinia pestis PY-99]
gi|391712580|gb|EIT43445.1| 23S rRNA methyltransferase [Yersinia pestis PY-100]
gi|391713119|gb|EIT43927.1| 23S rRNA methyltransferase [Yersinia pestis PY-101]
gi|391724780|gb|EIT54318.1| 23S rRNA methyltransferase [Yersinia pestis PY-102]
gi|391726169|gb|EIT55553.1| 23S rRNA methyltransferase [Yersinia pestis PY-103]
gi|391728624|gb|EIT57712.1| 23S rRNA methyltransferase [Yersinia pestis PY-113]
gi|411175700|gb|EKS45726.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
INS]
Length = 398
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PEADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|169831742|ref|YP_001717724.1| radical SAM protein [Candidatus Desulforudis audaxviator MP104C]
gi|205829744|sp|B1I501.1|RLMN_DESAP RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|169638586|gb|ACA60092.1| radical SAM enzyme, Cfr family [Candidatus Desulforudis audaxviator
MP104C]
Length = 318
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 159/271 (58%), Gaps = 21/271 (7%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ +G VE V+MR+D T+C+SSQVGC+M C FCA+ G+
Sbjct: 54 LGLDDGHAVETVLMRHDYG--------------RTVCVSSQVGCRMACRFCASALGGWIR 99
Query: 61 NLSSGEIVEQLVHASRLSN--IRNVVFMGMGEPLNNYAALVEAVRIMTGLPF--QVSPKR 116
NL SGE+ EQ++ R S + +VV MGMGEPL+NY ++ V +T P+ ++S +R
Sbjct: 100 NLRSGELYEQVLAVRRASGEPVTHVVLMGMGEPLDNYENTLKFVANVTA-PYGLRLSQRR 158
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
IT+ST G+V I K + L LA+SLHAP +R ++P R +PLE+L+ A EY +
Sbjct: 159 ITLSTCGLVPEIQKLARERLALTLAISLHAPNNALRDTLVPVNRKYPLEQLIPACAEYAR 218
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
+ +++ EYI+L GVND + A +L LL VNLIP NP+ S +R S + V
Sbjct: 219 RTGRRVSFEYILLGGVNDSPELARELSDLLTGLLGHVNLIPANPVPE-SGYRAPSPEAVR 277
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+F+++L + ++R+++G DI ACGQL
Sbjct: 278 TFRRVLEEG-GVPVSLRRELGADIGAACGQL 307
>gi|261494121|ref|ZP_05990624.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496038|ref|ZP_05992448.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261308288|gb|EEY09581.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310287|gb|EEY11487.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 415
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NLS EI+ Q+ AS++
Sbjct: 141 PEDDRATLCVSSQVGCALACTFCSTAQQGFNRNLSVAEIIGQVWRASKIIGNFGVTGVRP 200
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ IM + +S +R+T+ST G+V A++K + +
Sbjct: 201 ITNVVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQI-DV 259
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +++P + + ++ LM+++ +Y + S K+ IEY+MLD VND
Sbjct: 260 ALAISLHAPNDELRDELVPINKKYNIKMLMDSVNKYLEVSNANHGKVTIEYVMLDHVNDS 319
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HAHQL ++L+ +NLIP+NP + + SS+ +V FQK L Y TVRK
Sbjct: 320 TDHAHQLAEVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVTVRKT 377
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 378 RGDDIDAACGQLAGDVIDR 396
>gi|389580858|ref|ZP_10170885.1| 23S rRNA m2A2503 methyltransferase [Desulfobacter postgatei 2ac9]
gi|389402493|gb|EIM64715.1| 23S rRNA m2A2503 methyltransferase [Desulfobacter postgatei 2ac9]
Length = 346
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 110/273 (40%), Positives = 156/273 (57%), Gaps = 27/273 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +VE+V++ P TLC+S+Q GC M C FC T GFK NL+
Sbjct: 85 DGEYVESVLI--------------PEKEHYTLCVSTQAGCAMNCKFCLTAKTGFKRNLTM 130
Query: 65 GEIVEQLVHASRLS--------NIRNVVFMGMGEPLNNYAALVEAVRIM--TGLPFQVSP 114
GEIV Q+ A R ++ N+VFMGMGEPL NY L+ ++ ++ T + S
Sbjct: 131 GEIVGQVRDARRFVAQQGIEPLSLSNIVFMGMGEPLANYDNLLRSLGVIFDTDFGMKFSR 190
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+++TVST GI I + D +NLAVSL+A ++R +MP R +P+E L+ A KE+
Sbjct: 191 RKVTVSTSGIAPKIIQLGLDTE-VNLAVSLNATDNELRSSLMPVNRTWPIEALLAACKEF 249
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
+ + KI EYI++ GVND + HAH L +LL + VNLIPFN + F+ S D+
Sbjct: 250 EMKPRNKITFEYILMSGVNDSDAHAHDLVRLLSPIRAKVNLIPFNE-HPQAPFKRPSRDR 308
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+++F IL + N+ VRK G DIS ACGQL
Sbjct: 309 INAFLTILL-NRNMTAIVRKSKGDDISAACGQL 340
>gi|349611007|ref|ZP_08890323.1| ribosomal RNA large subunit methyltransferase N [Neisseria sp.
GT4A_CT1]
gi|348615037|gb|EGY64569.1| ribosomal RNA large subunit methyltransferase N [Neisseria sp.
GT4A_CT1]
Length = 364
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + S+++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVKDVPCKFNLIPFNPFPN-SGYERSTNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|296314505|ref|ZP_06864446.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768]
gi|296838812|gb|EFH22750.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768]
Length = 364
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 155/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND QH
Sbjct: 215 LAVSLHASNDEVRNQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDRAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVKDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|261377750|ref|ZP_05982323.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685]
gi|269146035|gb|EEZ72453.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685]
Length = 366
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NLS+ EI+ QL A++ I
Sbjct: 96 PESERGTLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V ++K +P +
Sbjct: 156 SNVVMMGMGEPMANFENVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDKLRDTMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR +I+P + +PL++LM A + Y K + I EY+MLDGVND+ QH
Sbjct: 215 LAVSLHASNDEVRNKIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A++L +L++ NLIPFNP + S + S+++ + F IL+ + + TVRK G
Sbjct: 275 AYELIELVKDVPCKFNLIPFNPFPN-SGYERSNNENIRIFIDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|390943210|ref|YP_006406971.1| 23S rRNA m(2)A-2503 methyltransferase [Belliella baltica DSM 15883]
gi|390416638|gb|AFL84216.1| 23S rRNA m(2)A-2503 methyltransferase [Belliella baltica DSM 15883]
Length = 354
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/274 (38%), Positives = 155/274 (56%), Gaps = 11/274 (4%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
M + G ++ + YDS + P R T C+SSQVGC + CNFCAT +
Sbjct: 74 MQHSSDGTIKNAVKLYDSKI--VESVLIPTSKRITACVSSQVGCSLDCNFCATARLKRMR 131
Query: 61 NLSSGEIVEQLVHASRLSNI------RNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVS 113
NL+ EI +Q+V + I N+VFMGMGEPL NY ++EA+ +I + ++
Sbjct: 132 NLNPDEIYDQVVAIKDEAEIYFKRPLTNIVFMGMGEPLLNYNNVIEAIDKITSPEGLGMA 191
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
P+RIT+STVGI I K D NLA+SLH+ + + R ++MP P+E L ++LK
Sbjct: 192 PRRITLSTVGIPKMIKKMADDGVRFNLAISLHSAINETRSRLMPINNVNPIEDLADSLKY 251
Query: 174 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDD 233
+ + +++K+ EY++ +G+ND+E HA L K + VN+I +NPI +FR +S +
Sbjct: 252 WYEKTKRKVTYEYVIWEGINDDEAHARALAKFCKIIPSKVNIIQYNPIDE-GEFRQASQE 310
Query: 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V + +IL I VRK GQDI ACGQL
Sbjct: 311 AVEMYVRILENQ-GIIAKVRKSRGQDIDAACGQL 343
>gi|388257762|ref|ZP_10134941.1| radical SAM enzyme, Cfr family [Cellvibrio sp. BR]
gi|387938929|gb|EIK45481.1| radical SAM enzyme, Cfr family [Cellvibrio sp. BR]
Length = 392
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 158/258 (61%), Gaps = 16/258 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R TLC+SSQVGC + C+FCATG GF +L++ EI+ Q+ A++
Sbjct: 115 PDGDRGTLCVSSQVGCSLDCSFCATGKQGFNRDLTAAEIIGQVWIAAKSFGQLQANGPRR 174
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ +V+++ +M + +S +R+T+ST G+V +++ S
Sbjct: 175 VTNVVMMGMGEPLLNFDNVVDSMNLMMHDNAYGISKRRVTLSTSGVVPQLDRL-SQYTDA 233
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK---NSQQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +++P R +P+ L+++ K Y + ++ +KI IEY ++D VND
Sbjct: 234 CLAISLHAPNDELRNELVPINRKYPIAMLLDSAKRYIEAMPDTHRKITIEYTLIDQVNDR 293
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HAH+L +LL V +NLIPFNP ++S ++ S++ + FQ IL + I TTVR
Sbjct: 294 PHHAHELAELLRDVPVKINLIPFNPF-NLSNYKRVSNNALRKFQDILMEAGYI-TTVRTT 351
Query: 256 MGQDISGACGQLVVNLPD 273
G DI ACGQL + D
Sbjct: 352 RGDDIDAACGQLAGQVND 369
>gi|319638408|ref|ZP_07993170.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa
C102]
gi|317400157|gb|EFV80816.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa
C102]
Length = 362
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + S+++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVKDVPCKFNLIPFNPFPN-SGYERSTNENIRIFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|227552455|ref|ZP_03982504.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330]
gi|257888305|ref|ZP_05667958.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,141,733]
gi|257896805|ref|ZP_05676458.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com12]
gi|257899742|ref|ZP_05679395.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com15]
gi|293378566|ref|ZP_06624729.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1]
gi|293573136|ref|ZP_06684073.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980]
gi|424764142|ref|ZP_18191598.1| 23S rRNA methyltransferase [Enterococcus faecium TX1337RF]
gi|425055517|ref|ZP_18458991.1| 23S rRNA methyltransferase [Enterococcus faecium 505]
gi|431040136|ref|ZP_19492643.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1590]
gi|431064364|ref|ZP_19493711.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1604]
gi|431123802|ref|ZP_19498515.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1613]
gi|431593526|ref|ZP_19521855.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1861]
gi|431738470|ref|ZP_19527413.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1972]
gi|431751095|ref|ZP_19539788.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2620]
gi|431758108|ref|ZP_19546736.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3083]
gi|431763569|ref|ZP_19552118.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3548]
gi|227178412|gb|EEI59384.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330]
gi|257824359|gb|EEV51291.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,141,733]
gi|257833370|gb|EEV59791.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com12]
gi|257837654|gb|EEV62728.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com15]
gi|291606774|gb|EFF36159.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980]
gi|292642895|gb|EFF61042.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1]
gi|402421174|gb|EJV53436.1| 23S rRNA methyltransferase [Enterococcus faecium TX1337RF]
gi|403033825|gb|EJY45310.1| 23S rRNA methyltransferase [Enterococcus faecium 505]
gi|430561988|gb|ELB01241.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1590]
gi|430567434|gb|ELB06518.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1613]
gi|430569005|gb|ELB08035.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1604]
gi|430591403|gb|ELB29441.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1861]
gi|430597198|gb|ELB35001.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1972]
gi|430615912|gb|ELB52844.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2620]
gi|430617771|gb|ELB54635.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3083]
gi|430621942|gb|ELB58683.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3548]
Length = 355
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 160/284 (56%), Gaps = 25/284 (8%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + L ++C+++QVGC +GC FCA+G + +L++
Sbjct: 87 DKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASGLLKKNRDLTA 132
Query: 65 GEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
GEIV Q++ + RN VV MG+GEP +NY +++ + I+ + +
Sbjct: 133 GEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHIINDAKGLAIGARH 192
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
ITVST G+ H I +F ++ +NLA+SLHAP +VR IM R+FP+EKLM A+ EY +
Sbjct: 193 ITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLE 252
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDK 234
+ ++I EYIML+ VND +HA QL LL+ + VNLIP+NP+ Q+ S
Sbjct: 253 KTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVSEHDQYSRSPKAD 312
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 278
V F +L+ + + +RK+ G DI ACGQL K +AK
Sbjct: 313 VLRFYDVLKKN-GVNCVIRKEHGTDIDAACGQLRSKQMKKTAAK 355
>gi|192359958|ref|YP_001981965.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
gi|190686123|gb|ACE83801.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
Length = 402
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 158/258 (61%), Gaps = 16/258 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R TLC+SSQVGC + C+FCATG GF +L++ EI+ Q+ A++
Sbjct: 126 PDGDRGTLCVSSQVGCSLDCSFCATGKQGFNRDLTAAEIIGQVWIAAKSFGQLQANGPRT 185
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ +V+A+ +M + +S +R+T+ST G+V +++ S
Sbjct: 186 VTNVVMMGMGEPLLNFDNVVDAMNLMMHDNAYGISKRRVTLSTSGVVPQLDRL-SQYTDA 244
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK---NSQQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +++P R +P+ L+++ + Y + ++ +KI IEY ++D VND
Sbjct: 245 CLAISLHAPNDELRNELVPINRKYPIAMLLDSARRYIQSMPDTHRKITIEYTLIDQVNDR 304
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
QHA QL +LL V +NLIPFNP ++S ++ S++ + FQ IL I TTVR
Sbjct: 305 PQHAQQLAELLRDVPVKINLIPFNPF-NLSNYKRVSNNALRKFQDILMQEGYI-TTVRTT 362
Query: 256 MGQDISGACGQLVVNLPD 273
G DI ACGQL ++ D
Sbjct: 363 RGDDIDAACGQLAGSVND 380
>gi|299530509|ref|ZP_07043929.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
gi|298721485|gb|EFI62422.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
Length = 369
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/265 (42%), Positives = 157/265 (59%), Gaps = 19/265 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN---- 79
P R TLC+SSQ GC +GC FC+TG GF NL++GEI+ QL +A R
Sbjct: 92 PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLNTGEILAQLWYAEHSLRKRFGTEDRI 151
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY+ALV A+R+M + +S +R+TVST G+V +++ D +
Sbjct: 152 ISNVVMMGMGEPLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDC-AV 210
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P + +P+ +L++A + Y + + + I EY MLDGVND+ +
Sbjct: 211 ALAVSLHAPNDPLRDNLVPLNKKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQLE 270
Query: 198 HAHQLGKLLET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL +L+ NLIPFNP + R+ S +V+ F +L + I TTV
Sbjct: 271 HARQLIELVRARGDGKSWCKFNLIPFNPFPASGLLRSPS-ARVTEFATLLSNA-GIVTTV 328
Query: 253 RKQMGQDISGACGQLVVNLPDKISA 277
RK G DI ACGQL ++ D+ A
Sbjct: 329 RKTRGDDIDAACGQLAGDVKDRTRA 353
>gi|109899434|ref|YP_662689.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
atlantica T6c]
gi|109701715|gb|ABG41635.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudoalteromonas atlantica
T6c]
Length = 380
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------ 79
P R+TLC+SSQVGC + C FC+T GF NLS EI+ Q+ + LSN
Sbjct: 105 PDEDRATLCVSSQVGCALECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIGLSNDSAKRP 164
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ +M L F +S +R+T+ST G+V A++ D +
Sbjct: 165 ITNVVMMGMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDML-GDQIDV 223
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + +P+++ + ++ Y S Q K+ +EY+ML+G+ND
Sbjct: 224 ALAISLHAPDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDS 283
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AH+L K+L +NLIPFNP S + SS+ ++ F K+L SY + VRK
Sbjct: 284 TDQAHELAKVLADTPCKINLIPFNPYPG-SPYSRSSNSRIDRFAKVL-SSYGLMVVVRKT 341
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 342 RGDDIDAACGQLVGDVVDR 360
>gi|419797471|ref|ZP_14322948.1| 23S rRNA m2A2503 methyltransferase [Neisseria sicca VK64]
gi|385698033|gb|EIG28425.1| 23S rRNA m2A2503 methyltransferase [Neisseria sicca VK64]
Length = 364
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + S+++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVKDVPCKFNLIPFNPFPN-SGYERSTNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|121635020|ref|YP_975265.1| hypothetical protein NMC1245 [Neisseria meningitidis FAM18]
gi|254805109|ref|YP_003083330.1| hypothetical protein NMO_1149 [Neisseria meningitidis alpha14]
gi|385340216|ref|YP_005894088.1| radical SAM enzyme, Cfr family [Neisseria meningitidis G2136]
gi|416177921|ref|ZP_11610290.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M6190]
gi|416191949|ref|ZP_11616330.1| radical SAM enzyme, Cfr family [Neisseria meningitidis ES14902]
gi|416203929|ref|ZP_11620162.1| radical SAM enzyme, Cfr family [Neisseria meningitidis 961-5945]
gi|421538259|ref|ZP_15984436.1| 23S rRNA methyltransferase [Neisseria meningitidis 93003]
gi|421544602|ref|ZP_15990678.1| 23S rRNA methyltransferase [Neisseria meningitidis NM140]
gi|421546717|ref|ZP_15992762.1| 23S rRNA methyltransferase [Neisseria meningitidis NM183]
gi|421548969|ref|ZP_15994993.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2781]
gi|421552920|ref|ZP_15998892.1| 23S rRNA methyltransferase [Neisseria meningitidis NM576]
gi|433467457|ref|ZP_20424911.1| 23S rRNA methyltransferase [Neisseria meningitidis 87255]
gi|433492708|ref|ZP_20449801.1| 23S rRNA methyltransferase [Neisseria meningitidis NM586]
gi|433494842|ref|ZP_20451910.1| 23S rRNA methyltransferase [Neisseria meningitidis NM762]
gi|433497009|ref|ZP_20454047.1| 23S rRNA methyltransferase [Neisseria meningitidis M7089]
gi|433499071|ref|ZP_20456080.1| 23S rRNA methyltransferase [Neisseria meningitidis M7124]
gi|433501047|ref|ZP_20458033.1| 23S rRNA methyltransferase [Neisseria meningitidis NM174]
gi|433503188|ref|ZP_20460149.1| 23S rRNA methyltransferase [Neisseria meningitidis NM126]
gi|205829823|sp|A1KUD6.1|RLMN_NEIMF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120866726|emb|CAM10479.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
gi|254668651|emb|CBA06309.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
gi|325132491|gb|EGC55184.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M6190]
gi|325138265|gb|EGC60834.1| radical SAM enzyme, Cfr family [Neisseria meningitidis ES14902]
gi|325142519|gb|EGC64920.1| radical SAM enzyme, Cfr family [Neisseria meningitidis 961-5945]
gi|325198460|gb|ADY93916.1| radical SAM enzyme, Cfr family [Neisseria meningitidis G2136]
gi|402317078|gb|EJU52617.1| 23S rRNA methyltransferase [Neisseria meningitidis 93003]
gi|402322962|gb|EJU58412.1| 23S rRNA methyltransferase [Neisseria meningitidis NM183]
gi|402323793|gb|EJU59235.1| 23S rRNA methyltransferase [Neisseria meningitidis NM140]
gi|402325648|gb|EJU61057.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2781]
gi|402330099|gb|EJU65448.1| 23S rRNA methyltransferase [Neisseria meningitidis NM576]
gi|432202291|gb|ELK58355.1| 23S rRNA methyltransferase [Neisseria meningitidis 87255]
gi|432228494|gb|ELK84194.1| 23S rRNA methyltransferase [Neisseria meningitidis NM586]
gi|432230045|gb|ELK85724.1| 23S rRNA methyltransferase [Neisseria meningitidis NM762]
gi|432233502|gb|ELK89129.1| 23S rRNA methyltransferase [Neisseria meningitidis M7089]
gi|432234905|gb|ELK90525.1| 23S rRNA methyltransferase [Neisseria meningitidis M7124]
gi|432236338|gb|ELK91947.1| 23S rRNA methyltransferase [Neisseria meningitidis NM174]
gi|432239953|gb|ELK95497.1| 23S rRNA methyltransferase [Neisseria meningitidis NM126]
Length = 364
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVKDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|332305581|ref|YP_004433432.1| radical SAM family protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410646698|ref|ZP_11357148.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola agarilytica
NO2]
gi|332172910|gb|AEE22164.1| radical SAM enzyme, Cfr family [Glaciecola sp. 4H-3-7+YE-5]
gi|410133870|dbj|GAC05547.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola agarilytica
NO2]
Length = 380
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------ 79
P R+TLC+SSQVGC + C FC+T GF NLS EI+ Q+ + LSN
Sbjct: 105 PDADRATLCVSSQVGCALECTFCSTAQQGFNRNLSVAEIIGQVWRVATTIGLSNDSAKRP 164
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ +M L F +S +R+T+ST G+V A++ D +
Sbjct: 165 ITNVVMMGMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDML-GDQIDV 223
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + +P+++ + ++ Y S Q K+ +EY+ML+G+ND
Sbjct: 224 ALAISLHAPDDTLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDS 283
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AH L K+L +NLIPFNP S + SS+ ++ F K+L SY + VRK
Sbjct: 284 TDQAHALAKVLADTPSKINLIPFNPYPG-SPYSRSSNSRIDRFAKVL-SSYGLMVVVRKT 341
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 342 RGDDIDAACGQLVGDVVDR 360
>gi|390454601|ref|ZP_10240129.1| hypothetical protein PpeoK3_11317 [Paenibacillus peoriae KCTC 3763]
Length = 365
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 161/274 (58%), Gaps = 25/274 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
Q+G +E V+MR+ L ++C+++QVGC +GC+FCA+G + +LS
Sbjct: 86 QDGNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKKSRDLS 131
Query: 64 SGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPK 115
SGEIVEQ++ + +VV MG+GEP +N+ L + +R++ + P+
Sbjct: 132 SGEIVEQIMKVQLYLDKERPGDRVSHVVVMGIGEPFDNFVNLSDFIRVIKDHKGLAIGPR 191
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
ITVST G+ I +F +NLA+SLHAP ++R +IM RA P+EKLM A+ Y
Sbjct: 192 HITVSTSGLADKIIEFADSDLHVNLAISLHAPNNEIRTRIMKINRAIPIEKLMQAIDYYL 251
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDD 233
+ ++I +EYI+L GVND ++HA +L +L+ + + VNLIP+NP+ SQ++ S +
Sbjct: 252 DKTNRRITLEYILLKGVNDGKEHALELAELVGHRRNLANVNLIPYNPVDEHSQYQRSESE 311
Query: 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ F +L+ I +VR + G DI ACGQL
Sbjct: 312 SITGFYDVLKKQ-GISCSVRLEHGVDIDAACGQL 344
>gi|205829853|sp|Q15R53.2|RLMN_PSEA6 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 376
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------ 79
P R+TLC+SSQVGC + C FC+T GF NLS EI+ Q+ + LSN
Sbjct: 101 PDEDRATLCVSSQVGCALECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIGLSNDSAKRP 160
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ +M L F +S +R+T+ST G+V A++ D +
Sbjct: 161 ITNVVMMGMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDML-GDQIDV 219
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + +P+++ + ++ Y S Q K+ +EY+ML+G+ND
Sbjct: 220 ALAISLHAPDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDS 279
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AH+L K+L +NLIPFNP S + SS+ ++ F K+L SY + VRK
Sbjct: 280 TDQAHELAKVLADTPCKINLIPFNPYPG-SPYSRSSNSRIDRFAKVL-SSYGLMVVVRKT 337
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 338 RGDDIDAACGQLVGDVVDR 356
>gi|385851095|ref|YP_005897610.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M04-240196]
gi|325205918|gb|ADZ01371.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M04-240196]
gi|389605577|emb|CCA44494.1| ribosomal RNA large subunit methyltransferase N [Neisseria
meningitidis alpha522]
Length = 364
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 156/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVKDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|315658497|ref|ZP_07911369.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590]
gi|315496826|gb|EFU85149.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590]
Length = 364
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 157/273 (57%), Gaps = 22/273 (8%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ Q+G +E V+MR+D +++C+++QVGC++GC FCA+ G K
Sbjct: 98 FELQDGYTIETVLMRHDYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKR 143
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSP 114
NL +GEIV Q++ + + +V MG+GEP NY +++ +RI+ +
Sbjct: 144 NLEAGEIVSQVLTVQKALDATEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGA 203
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST GIV I F + +N AVSLHA DVR ++MP RA+ ++KLM A++ Y
Sbjct: 204 RHITVSTSGIVPRIYDFADEEIQINFAVSLHAAKDDVRSKLMPINRAYNVDKLMEAIRYY 263
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
Q+ + ++I EY + GVND+ +HA +L L++ VNLIP N + + +TS DD
Sbjct: 264 QQKTNRRITFEYGLFGGVNDQLEHARELAHLIKNLNCHVNLIPVNHVPERNYVKTSKDD- 322
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F+K L+ + T+R++ G DI ACGQL
Sbjct: 323 IFKFEKELK-RLGVNATIRREQGSDIDAACGQL 354
>gi|290476003|ref|YP_003468899.1| pyruvate formate lyase activating enzyme 2 [Xenorhabdus bovienii
SS-2004]
gi|289175332|emb|CBJ82135.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
bovienii SS-2004]
Length = 392
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 118 PEDERATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRP 177
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 178 ITNVVMMGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMVDV 236
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP DVR +I+P R + +E+ + ++ Y S Q ++ +EY+MLD VND
Sbjct: 237 ALAISLHAPTDDVRDEIVPINRKYNIEEFLAGVRRYLAKSNANQGRVTVEYVMLDHVNDS 296
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 297 VEQAHQLAECLKDTPSKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 354
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 355 RGDDIDAACGQLAGDVIDR 373
>gi|313680864|ref|YP_004058603.1| 23S rRNA m(2)a-2503 methyltransferase [Oceanithermus profundus DSM
14977]
gi|313153579|gb|ADR37430.1| 23S rRNA m(2)A-2503 methyltransferase [Oceanithermus profundus DSM
14977]
Length = 370
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 103/248 (41%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS-----NIRNV 83
P R T+CISSQVGC GC FCATG MGF NL+ EI++Q++ + IRNV
Sbjct: 123 PYADRKTVCISSQVGCPAGCTFCATGKMGFGRNLTGPEILDQILAVAYHQGLGPREIRNV 182
Query: 84 VFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 142
V MGMGEPL NY + AVR M +SP+RIT+STVGI I + G+ LA+
Sbjct: 183 VLMGMGEPLLNYENIAWAVRRMLDKNALAMSPRRITLSTVGIPGGIRRLAEGDLGVKLAL 242
Query: 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 202
SLHAP + R +I+P A + + ++M A++ Y +++++ IEY ML VND E+ A +L
Sbjct: 243 SLHAPDDETRRRIIPTAHRYSIAEIMEAVRAYFDRTKRRVTIEYTMLRDVNDREEQAREL 302
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
++L+ VNLIPFNP + S ++ F +L + TVR G D+
Sbjct: 303 ARILKGLVAHVNLIPFNPWEG-APVAGSGKKRIQRFAAVLE-REGVPVTVRWSRGVDVGA 360
Query: 263 ACGQLVVN 270
ACGQL +
Sbjct: 361 ACGQLALK 368
>gi|334147993|ref|YP_004510922.1| ribosomal RNA large subunit methyltransferase N [Porphyromonas
gingivalis TDC60]
gi|333805149|dbj|BAK26356.1| ribosomal RNA large subunit methyltransferase N [Porphyromonas
gingivalis TDC60]
Length = 352
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 166/278 (59%), Gaps = 21/278 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
G FVE+V++ P G R+TLCISSQVGCKM C FC TG G+ NLS+
Sbjct: 94 EGRFVESVLI--------------PEGDRATLCISSQVGCKMDCLFCMTGKQGWNGNLSA 139
Query: 65 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQV--SPKRITVSTV 122
EI+ Q+ + + N+V+MGMGEPL+N ++ ++ +T P+ + SPKRITVST+
Sbjct: 140 AEILNQIFSVDEAAELTNLVYMGMGEPLDNTDEVLRSIEALTE-PWGMGWSPKRITVSTI 198
Query: 123 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 182
G + +F ++ +LAVSLH+P + R ++MP +AFP+ + ++ ++ Y + Q+++
Sbjct: 199 G-AKGLERFLAE-SRCHLAVSLHSPFPEERRKLMPGEKAFPIMQTLDRIRVYDFSGQRRV 256
Query: 183 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 242
EYI+ DG+ND+ +HA +L +L +NLI F+ I +VS R+S ++ +F+K +
Sbjct: 257 SFEYIVFDGLNDDMRHADELAAILRGIPCRINLIRFHKIPAVS-LRSSDTARMEAFRKRM 315
Query: 243 RGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 280
S+ T+R G+DI ACG L + + KS+
Sbjct: 316 E-SHGYTCTIRASRGEDIFAACGMLSTSKAESSEEKSS 352
>gi|261345336|ref|ZP_05972980.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
gi|282566377|gb|EFB71912.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
Length = 393
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 119 PEADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGRRP 178
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 179 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKL-GDMIDV 237
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP DVR +I+P + + +E +N++ Y S ++ +EY+MLD +ND
Sbjct: 238 ALAISLHAPTDDVRDEIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHINDS 297
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 298 VEQAHQLAECLKNTPSKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 355
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 356 RGDDIDAACGQLAGDVIDR 374
>gi|410641928|ref|ZP_11352447.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
chathamensis S18K6]
gi|410138830|dbj|GAC10634.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
chathamensis S18K6]
Length = 380
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------ 79
P R+TLC+SSQVGC + C FC+T GF NLS EI+ Q+ + LSN
Sbjct: 105 PDADRATLCVSSQVGCALECTFCSTAQQGFNRNLSVAEIIGQVWRVATTIGLSNDSAKRP 164
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ +M L F +S +R+T+ST G+V A++ D +
Sbjct: 165 ITNVVMMGMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDML-GDQIDV 223
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + +P+++ + ++ Y S Q K+ +EY+ML+G+ND
Sbjct: 224 ALAISLHAPDDTLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDS 283
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AH L K+L +NLIPFNP S + SS+ ++ F K+L SY + VRK
Sbjct: 284 TDQAHALAKVLADTPSKINLIPFNPYPG-SPYSRSSNSRIDRFAKVL-SSYGLMVVVRKT 341
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 342 RGDDIDAACGQLVGDVVDR 360
>gi|333928648|ref|YP_004502227.1| ribosomal RNA large subunit methyltransferase N [Serratia sp. AS12]
gi|333933601|ref|YP_004507179.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica AS9]
gi|386330471|ref|YP_006026641.1| ribosomal RNA large subunit methyltransferase N [Serratia sp. AS13]
gi|333475208|gb|AEF46918.1| Ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica AS9]
gi|333492708|gb|AEF51870.1| Ribosomal RNA large subunit methyltransferase N [Serratia sp. AS12]
gi|333962804|gb|AEG29577.1| Ribosomal RNA large subunit methyltransferase N [Serratia sp. AS13]
Length = 398
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGERP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P R + +E + A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPNDKIRDEIVPINRKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AHQL ++L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TDDAHQLAEVLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|270264732|ref|ZP_06192997.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
gi|386823492|ref|ZP_10110640.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica PRI-2C]
gi|421785006|ref|ZP_16221440.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica A30]
gi|270041415|gb|EFA14514.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
gi|386379610|gb|EIJ20399.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica PRI-2C]
gi|407752723|gb|EKF62872.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica A30]
Length = 398
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGERP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P R + +E + A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPNDKIRDEIVPINRKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AHQL ++L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TDDAHQLAEVLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|161870181|ref|YP_001599351.1| hypothetical protein NMCC_1221 [Neisseria meningitidis 053442]
gi|205829821|sp|A9LZN6.1|RLMN_NEIM0 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|161595734|gb|ABX73394.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 364
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 155/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND QH
Sbjct: 215 LAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDRAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVKDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|162453111|ref|YP_001615478.1| radical SAM superfamily protein [Sorangium cellulosum So ce56]
gi|205829655|sp|A9FFJ6.1|RLMN_SORC5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|161163693|emb|CAN94998.1| Radical SAM superfamily protein [Sorangium cellulosum So ce56]
Length = 389
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 151/244 (61%), Gaps = 10/244 (4%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----SNIRNVVFMGM 88
R T CIS+QVGC MGC FCA+G G K +L + EI Q++ + +RNVV+MGM
Sbjct: 137 RVTQCISTQVGCAMGCGFCASGVAGLKRHLGAEEIAGQVLLGRAMLEEGEELRNVVYMGM 196
Query: 89 GEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPG-LNLAVSLHA 146
GEPL+NY A ++R++T +S +R+TVST G+V I + +D G + LA+SLHA
Sbjct: 197 GEPLHNYEATARSLRLLTHPEGINLSTRRVTVSTSGLVPEIARLGADFGGQIALAISLHA 256
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
+ R +MP R PL++L+ AL+ Y +++I IEY ++ G ND+ A +L KLL
Sbjct: 257 ADDETRSALMPINRKHPLDELLAALRAYPLPRRRRITIEYTLVAGQNDDPAEARRLAKLL 316
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISGACG 265
V +NLIP NPI S + ++V++FQ++L + Y+ VR++ G D+S ACG
Sbjct: 317 RGLPVKINLIPMNPI-EASSLGPPAQERVAAFQEVLTQAGYS--CFVRRRRGDDVSAACG 373
Query: 266 QLVV 269
QLV+
Sbjct: 374 QLVL 377
>gi|430377501|ref|ZP_19431634.1| Cfr family radical SAM protein [Moraxella macacae 0408225]
gi|429540638|gb|ELA08667.1| Cfr family radical SAM protein [Moraxella macacae 0408225]
Length = 402
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 113/285 (39%), Positives = 165/285 (57%), Gaps = 28/285 (9%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G VE V++ D + K G R TLCISSQVGC + C+FC+TG GF+ NL+
Sbjct: 110 GSLVETVLIPADDN--KQFG-------RKTLCISSQVGCALDCSFCSTGKQGFERNLTES 160
Query: 66 EIVEQLVHAS-----------RLSNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVS 113
EI+ QL A+ R + + NVV MGMGEPL NY +V ++ +M F +S
Sbjct: 161 EIIGQLFVANQSYMEGVPAVKRENRVTNVVMMGMGEPLLNYEPVVASMSLMLDDFGFGLS 220
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
+R+T+ST G+V + D+ + LA+SLHAP +R +++P + +PL +L+ A K
Sbjct: 221 KRRVTLSTSGVVPKMYDLAKDI-DVALAISLHAPNDKLRNELVPINKKYPLAELIKAAKA 279
Query: 174 --YQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 229
Y +N + K + IEY+ML VND ++HAHQL LL+ +NLIPFNP + +
Sbjct: 280 YVYDENPRHKKHVTIEYVMLKDVNDSDEHAHQLAVLLQDLPSKINLIPFNPFAH-APYER 338
Query: 230 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
SS++++ +F IL + T+R+ G DI ACGQLV + DK
Sbjct: 339 SSNNRIHAFSGILNNA-GFVCTIRQTRGDDIDAACGQLVGQVADK 382
>gi|350561447|ref|ZP_08930285.1| radical SAM enzyme, Cfr family [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349780479|gb|EGZ34797.1| radical SAM enzyme, Cfr family [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 377
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 154/257 (59%), Gaps = 14/257 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--------SNI 80
P R TLCISSQVGC + C FC+T GF NLS+ EI+ QL A+R +
Sbjct: 102 PEDDRGTLCISSQVGCALDCTFCSTAQQGFNRNLSAQEIIGQLWLANRRLPIPEGRSRAV 161
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVVFMGMGEPL N A+V+AV +M + +S +R+TVST G+V A+++ + +
Sbjct: 162 TNVVFMGMGEPLANVEAVVDAVDLMLDDNAYGLSKRRVTVSTSGLVPALDRLGAST-DVA 220
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS--QQKIFIEYIMLDGVNDEEQ 197
LAVSLHAP +R +++P R +P+ +L++A + Y ++ ++ EY++L G+ND+ Q
Sbjct: 221 LAVSLHAPNDALRDRLVPINRKYPIRELLDACRRYTRDGARHHRVTFEYVLLAGINDQPQ 280
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA +L LL +NLIPFNP S F S + V F+K+L + + T VR+ G
Sbjct: 281 HARELITLLRDVPCKINLIPFNPFPG-SPFVRPSANAVQVFEKLLDDAGFV-TIVRRTRG 338
Query: 258 QDISGACGQLVVNLPDK 274
DI ACGQLV + D+
Sbjct: 339 DDIDAACGQLVGQVADR 355
>gi|418637153|ref|ZP_13199480.1| 23S rRNA m2A2503 methyltransferase, partial [Staphylococcus
lugdunensis VCU139]
gi|374839520|gb|EHS03032.1| 23S rRNA m2A2503 methyltransferase, partial [Staphylococcus
lugdunensis VCU139]
Length = 285
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 157/273 (57%), Gaps = 22/273 (8%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ Q+G +E V+MR+D +++C+++QVGC++GC FCA+ G K
Sbjct: 19 FELQDGYTIETVLMRHDYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKR 64
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSP 114
NL +GEIV Q++ + + +V MG+GEP NY +++ +RI+ +
Sbjct: 65 NLEAGEIVSQVLTVQKALDATEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGA 124
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST GIV I F + +N AVSLHA DVR ++MP RA+ ++KLM A++ Y
Sbjct: 125 RHITVSTSGIVPRIYDFADEEIQINFAVSLHAAKDDVRSKLMPINRAYNVDKLMEAIRYY 184
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
Q+ + ++I EY + GVND+ +HA +L L++ VNLIP N + + +TS DD
Sbjct: 185 QQKTNRRITFEYGLFGGVNDQLEHARELAHLIKNLNCHVNLIPVNHVPERNYVKTSKDD- 243
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F+K L+ + T+R++ G DI ACGQL
Sbjct: 244 IFKFEKELK-RLGVNATIRREQGSDIDAACGQL 275
>gi|220903723|ref|YP_002479035.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868022|gb|ACL48357.1| radical SAM enzyme, Cfr family [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 386
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 168/291 (57%), Gaps = 28/291 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G +E V++ DS R G R T C+S QVGC MGC FC+TG MGF+ N++
Sbjct: 107 EDGAQIETVLIPSDS---------REGVRRWTQCLSCQVGCTMGCTFCSTGQMGFERNMT 157
Query: 64 SGEIVEQLVHA------SRLSN--IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQV 112
GEI+ Q++ A +RL +RN+VFMGMGEPL N ++ ++ + GL F
Sbjct: 158 MGEILGQILVAREHLGDTRLHWPILRNLVFMGMGEPLLNLKEVMRSLESLNNDKGLGF-- 215
Query: 113 SPKRITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
SP+RITVST GI + + GL LAVSLHAP Q VR +IMP A + L LM AL
Sbjct: 216 SPRRITVSTCGIEKGLKELGES--GLAFLAVSLHAPNQAVRERIMPKAARWRLNDLMAAL 273
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
K Y +++ I EY+ML GVND +HA +L L+ + +N+I +N S ++ S
Sbjct: 274 KSYPLKTREHITFEYLMLGGVNDSLEHARELAPLVSAVKGKLNIIVYNA-AEGSPYQAPS 332
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL-VVNLPDKISAKSTP 281
++++ +F+K L S +I +RK GQDI ACGQL D +A + P
Sbjct: 333 EERILAFEKYL-WSKDITAIIRKSKGQDIKAACGQLKAARQKDTAAADADP 382
>gi|358468073|ref|ZP_09177720.1| 23S rRNA m2A2503 methyltransferase [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357065731|gb|EHI75907.1| 23S rRNA m2A2503 methyltransferase [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 358
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 155/273 (56%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDKGTIETVLLRHRDSKNK--------EIRNTLCVSSQVGCPIKCSFCATGQGGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R ++ N+VFMGMGEPL N L A+ I++ +S
Sbjct: 138 NLSVSEILNQVYTVERRLRKKDESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K + + LA+SLH+ + + R QI+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVPGIEKILLEKIPIELAISLHSAINEKRDQIIPINKNFPLEDLSAVLVEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISEVDAYALSSFIHQFDHVVNLIPYNEVEGVEHTRPSM-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IEKFYSYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|334125110|ref|ZP_08499104.1| cfr family radical SAM enzyme [Enterobacter hormaechei ATCC 49162]
gi|419958889|ref|ZP_14474947.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae GS1]
gi|449474378|ref|XP_004154155.1| PREDICTED: dual-specificity RNA methyltransferase RlmN-like
[Cucumis sativus]
gi|295097942|emb|CBK87032.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
gi|333387680|gb|EGK58874.1| cfr family radical SAM enzyme [Enterobacter hormaechei ATCC 49162]
gi|388606192|gb|EIM35404.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae GS1]
Length = 388
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + ++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L +LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHELAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|186896255|ref|YP_001873367.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis PB1/+]
gi|205829930|sp|B2K9Q3.1|RLMN_YERPB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|186699281|gb|ACC89910.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis PB1/+]
Length = 398
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PEADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPTDDIRDEIVPINRKYNIEMFLAAVRRYLDKSKANGGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|406915762|gb|EKD54811.1| hypothetical protein ACD_60C00041G0002 [uncultured bacterium]
Length = 381
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 157/257 (61%), Gaps = 14/257 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSN-------- 79
P R TLC+SSQVGC + C+FC+TG GF NL++ EI+ QL A R LS
Sbjct: 103 PEKTRGTLCVSSQVGCTLNCDFCSTGKQGFNRNLTAHEIIGQLFIAVRSLSKQQGLHDHA 162
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ +V A+ IM + +S +R+T+ST G++ A+ + + +
Sbjct: 163 VTNVVMMGMGEPLLNFENVVNAMNIMLDDFGYGLSKRRVTLSTAGVIPAMYELRK-VSDV 221
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R ++P + +PL++LM A KEY K +++ + +EY+ML G+ND +Q
Sbjct: 222 ALAVSLHAPTDELRNVLVPLNKKYPLKELMTACKEYFKEDKRRYVTMEYVMLAGINDSDQ 281
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL +LL+ + VNLIPFNP + + ++ S + F++ L + I RK G
Sbjct: 282 HAQQLIRLLKGVRAKVNLIPFNPFPNTA-YKRSDQPTIDRFRETLMRA-GINAITRKTRG 339
Query: 258 QDISGACGQLVVNLPDK 274
I ACGQLV + D+
Sbjct: 340 DAIDAACGQLVGEVKDR 356
>gi|261340821|ref|ZP_05968679.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
35316]
gi|288317247|gb|EFC56185.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
35316]
Length = 388
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + ++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L +LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHELAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|219682208|ref|YP_002468592.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|384226090|ref|YP_005617253.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
gi|384226611|ref|YP_005618362.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
JF98 (Acyrthosiphon pisum)]
gi|384227147|ref|YP_005618897.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
LL01 (Acyrthosiphon pisum)]
gi|414562644|ref|YP_005617835.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
JF99 (Acyrthosiphon pisum)]
gi|219621941|gb|ACL30097.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|311086023|gb|ADP66105.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
LL01 (Acyrthosiphon pisum)]
gi|311086597|gb|ADP66678.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
gi|311087180|gb|ADP67260.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
JF99 (Acyrthosiphon pisum)]
gi|311087708|gb|ADP67787.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
JF98 (Acyrthosiphon pisum)]
Length = 363
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 107/250 (42%), Positives = 151/250 (60%), Gaps = 14/250 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------SNIR 81
P RSTLC+SSQ+GC + C+FCATG GF+ NL EI+ Q+ A++ NI
Sbjct: 107 PEKKRSTLCVSSQIGCSLKCHFCATGQEGFQRNLKVSEIIAQIWQANKRLKEKNIKKNIT 166
Query: 82 NVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 140
N+VFMGMGEPL N +V A+ I+ F +S +R+T+ST GIV A++K ++ ++L
Sbjct: 167 NIVFMGMGEPLLNLKNVVSALTIILDEYGFGLSKRRVTLSTSGIVPALDKLR-NMIDVSL 225
Query: 141 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQ 197
A+SLHAP +R IMP R + + ++++ +Y K S I IEY+MLD +ND +
Sbjct: 226 AISLHAPNDFIRNIIMPINRKYNISSVLSSALKYFKYSNANRGGITIEYVMLDRINDSNE 285
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL LL +NLIP+N S F S+ D+++ F ILR TT+RK G
Sbjct: 286 HARQLSVLLSKIPSKINLIPWNSFSGPS-FLCSNTDRINMFANILRKK-GFTTTIRKNRG 343
Query: 258 QDISGACGQL 267
+DI+ ACGQL
Sbjct: 344 EDINAACGQL 353
>gi|89072699|ref|ZP_01159264.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34]
gi|89051519|gb|EAR56973.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34]
Length = 373
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR------- 81
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A++ I+
Sbjct: 99 PDEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKEVGIQKDTGRRP 158
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
N+V MGMGEPL N L+ A+ IM L F +S +R+TVST G+V + + D +
Sbjct: 159 ITNIVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQM-IDTIDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R QIMP + +E ++ ++ Y ++ + ++ +EY++LD VND+
Sbjct: 218 ALAISLHAPTDELRSQIMPINDRWNIEAFLDVVRRYVNSTNANRGRVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA QL K+L+ +NLIPFNP S ++ S+ ++ F K L Y+ TVRK
Sbjct: 278 MEHARQLAKVLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFMKTLM-EYDFTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|441504685|ref|ZP_20986678.1| Ribosomal RNA large subunit methyltransferase N [Photobacterium sp.
AK15]
gi|441427784|gb|ELR65253.1| Ribosomal RNA large subunit methyltransferase N [Photobacterium sp.
AK15]
Length = 374
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A++
Sbjct: 99 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKEIGVEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V +++ +D +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQM-TDNIDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R QIMP + ++ + +++ Y +S + ++ +EY++LD VND+
Sbjct: 218 ALAISLHAPTDELRSQIMPINDRWNIDDFLGSVRRYIASSNANRGRVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA QL K L+ +NLIPFNP S ++ S+ +V F K L Y+ TVRK
Sbjct: 278 MEHARQLAKTLKDTPAKINLIPFNPYPG-SPYKKPSNSRVDRFMKTLM-EYDFTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|89901088|ref|YP_523559.1| hypothetical protein Rfer_2310 [Rhodoferax ferrireducens T118]
gi|123397164|sp|Q21W25.1|RLMN_RHOFD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|89345825|gb|ABD70028.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
Length = 382
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 150/262 (57%), Gaps = 19/262 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLCISSQ GC MGC FC+TG GF NL +GEI+ QL A
Sbjct: 96 PEEDRGTLCISSQAGCAMGCRFCSTGHQGFSRNLKTGEIIAQLWFAEHFLRKHLQRDERV 155
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NYA LV A+R M + +S +R+TVST G+V +++ D P +
Sbjct: 156 ISNVVMMGMGEPLQNYAELVPALRAMLDDHGYGLSRRRVTVSTSGVVPMMDRLARDCP-V 214
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P + + L +L+NA Y + + I EY ML+ VND+ +
Sbjct: 215 ALAVSLHAPNDLLRDDLVPLNKKYSLAELLNACNRYLAYAPRDFITFEYCMLEDVNDQPE 274
Query: 198 HAHQLGKLLETF-----QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL +L++ + NLIPFNP S S+ +++ +F KIL + I TT+
Sbjct: 275 HAQQLVRLVQHYSSGGVWCKFNLIPFNPF-PASGLTRSTPERIQAFAKILSDA-GIVTTI 332
Query: 253 RKQMGQDISGACGQLVVNLPDK 274
RK G DI ACGQL + D+
Sbjct: 333 RKTRGDDIDAACGQLAGEVKDR 354
>gi|152971378|ref|YP_001336487.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238895973|ref|YP_002920709.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
gi|262040254|ref|ZP_06013505.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330007776|ref|ZP_08306073.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
gi|365143329|ref|ZP_09348249.1| ribosomal RNA large subunit methyltransferase N [Klebsiella sp.
4_1_44FAA]
gi|378980078|ref|YP_005228219.1| hypothetical protein KPHS_39190 [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386036000|ref|YP_005955913.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae KCTC 2242]
gi|402779528|ref|YP_006635074.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|419764239|ref|ZP_14290479.1| 23S rRNA methyltransferase domain protein [Klebsiella pneumoniae
subsp. pneumoniae DSM 30104]
gi|419975700|ref|ZP_14491107.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH1]
gi|419981597|ref|ZP_14496871.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH2]
gi|419986790|ref|ZP_14501918.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH4]
gi|419992529|ref|ZP_14507484.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH5]
gi|419998752|ref|ZP_14513536.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH6]
gi|420004590|ref|ZP_14519225.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH7]
gi|420010336|ref|ZP_14524810.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH8]
gi|420016468|ref|ZP_14530759.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH9]
gi|420022049|ref|ZP_14536222.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH10]
gi|420027472|ref|ZP_14541464.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH11]
gi|420033393|ref|ZP_14547198.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH12]
gi|420039761|ref|ZP_14553389.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH14]
gi|420044934|ref|ZP_14558409.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH16]
gi|420050811|ref|ZP_14564106.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH17]
gi|420056372|ref|ZP_14569529.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH18]
gi|420061024|ref|ZP_14574017.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH19]
gi|420067735|ref|ZP_14580524.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH20]
gi|420072996|ref|ZP_14585628.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH21]
gi|420080373|ref|ZP_14592797.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH22]
gi|420082543|ref|ZP_14594839.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH23]
gi|421911304|ref|ZP_16341067.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421917099|ref|ZP_16346663.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424831843|ref|ZP_18256571.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424932305|ref|ZP_18350677.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|425075470|ref|ZP_18478573.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425082682|ref|ZP_18485779.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425086105|ref|ZP_18489198.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|425092764|ref|ZP_18495849.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|428149849|ref|ZP_18997658.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|428936471|ref|ZP_19009875.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae JHCK1]
gi|428942440|ref|ZP_19015434.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae VA360]
gi|449059461|ref|ZP_21737156.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae hvKP1]
gi|205829779|sp|A6TCD6.1|RLMN_KLEP7 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|150956227|gb|ABR78257.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238548291|dbj|BAH64642.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
gi|259042363|gb|EEW43383.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328535320|gb|EGF61805.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
gi|339763128|gb|AEJ99348.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae KCTC 2242]
gi|363649671|gb|EHL88778.1| ribosomal RNA large subunit methyltransferase N [Klebsiella sp.
4_1_44FAA]
gi|364519489|gb|AEW62617.1| hypothetical protein KPHS_39190 [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397342365|gb|EJJ35527.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH1]
gi|397342883|gb|EJJ36038.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH2]
gi|397346794|gb|EJJ39906.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH4]
gi|397359708|gb|EJJ52399.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH6]
gi|397360780|gb|EJJ53452.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH5]
gi|397365269|gb|EJJ57894.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH7]
gi|397374848|gb|EJJ67162.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH9]
gi|397378915|gb|EJJ71118.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH8]
gi|397385452|gb|EJJ77548.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH10]
gi|397393278|gb|EJJ85040.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH11]
gi|397395056|gb|EJJ86770.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH12]
gi|397402169|gb|EJJ93780.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH14]
gi|397410403|gb|EJK01685.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH17]
gi|397410876|gb|EJK02146.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH16]
gi|397420629|gb|EJK11689.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH18]
gi|397427544|gb|EJK18312.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH20]
gi|397431931|gb|EJK22599.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH19]
gi|397438490|gb|EJK28988.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH21]
gi|397441407|gb|EJK31782.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH22]
gi|397452140|gb|EJK42214.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH23]
gi|397742822|gb|EJK90040.1| 23S rRNA methyltransferase domain protein [Klebsiella pneumoniae
subsp. pneumoniae DSM 30104]
gi|402540467|gb|AFQ64616.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|405594344|gb|EKB67759.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405600934|gb|EKB74099.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405605638|gb|EKB78667.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405611990|gb|EKB84756.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|407806492|gb|EKF77743.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|410114840|emb|CCM83692.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410120816|emb|CCM89288.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|414709280|emb|CCN30984.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426298281|gb|EKV60699.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae JHCK1]
gi|426298658|gb|EKV61047.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae VA360]
gi|427540205|emb|CCM93796.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|448874746|gb|EMB09778.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae hvKP1]
Length = 388
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E +N+++ Y S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHELAALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|345300389|ref|YP_004829747.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
asburiae LF7a]
gi|345094326|gb|AEN65962.1| Ribosomal RNA large subunit methyltransferase N [Enterobacter
asburiae LF7a]
Length = 388
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + ++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L +LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHELAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|225075197|ref|ZP_03718396.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens
NRL30031/H210]
gi|224953372|gb|EEG34581.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens
NRL30031/H210]
Length = 398
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 154/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 132 PEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 191
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 192 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VA 250
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 251 LAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 310
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L++ NLIPFNP + S + S+++ + F+ IL+ TVRK G
Sbjct: 311 ARELIELVKDVPCKFNLIPFNPFPN-SGYERSTNENIRVFRDILQ-QVGFVVTVRKTRGD 368
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 369 DIDAACGQLAGQVQDK 384
>gi|206580011|ref|YP_002237132.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae 342]
gi|288934092|ref|YP_003438151.1| Cfr family radical SAM protein [Klebsiella variicola At-22]
gi|290508289|ref|ZP_06547660.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
gi|254807185|sp|B5XNL2.1|RLMN_KLEP3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|206569069|gb|ACI10845.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342]
gi|288888821|gb|ADC57139.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22]
gi|289777683|gb|EFD85680.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
Length = 388
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E +N+++ Y S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHELAALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|340750687|ref|ZP_08687525.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
mortiferum ATCC 9817]
gi|340562385|gb|EEO35365.2| ribosomal RNA large subunit methyltransferase N [Fusobacterium
mortiferum ATCC 9817]
Length = 352
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 103/270 (38%), Positives = 155/270 (57%), Gaps = 20/270 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G +E V++R+ R+TLCISSQVGC + C FCATG GF +L+
Sbjct: 88 EDGNTIETVLLRHKDK-------------RNTLCISSQVGCAVKCAFCATGQGGFVRDLN 134
Query: 64 SGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRI 117
EI+ Q+ R +N+ N+VFMGMGEPL N +++A+ I++ +S ++I
Sbjct: 135 VSEIINQVYTIERRLVKQGTNLNNIVFMGMGEPLLNLTNVLKALEILSNENGINISKRKI 194
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+ST GIV I K + + LA+SLH+ + + R +I+P R +PLE L L+EYQ+
Sbjct: 195 TISTSGIVPNIEKILLEKVPVELAISLHSAINEKRDEIIPINRRYPLEDLHAVLQEYQRQ 254
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
++++I EYI+++ N E A+ L + F VVNLIP NP+ R SD K+
Sbjct: 255 TKRRITFEYILINNFNVSEGDANALADFVHDFDHVVNLIPCNPVEGTEMTR-PSDKKIER 313
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQL 267
F L+ + T+R++ G DI GACGQL
Sbjct: 314 FVNFLQNVRKVNVTIRREKGTDIDGACGQL 343
>gi|344995748|ref|YP_004798091.1| ribosomal RNA large subunit methyltransferase N
[Caldicellulosiruptor lactoaceticus 6A]
gi|343963967|gb|AEM73114.1| Ribosomal RNA large subunit methyltransferase N
[Caldicellulosiruptor lactoaceticus 6A]
Length = 344
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 152/238 (63%), Gaps = 7/238 (2%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEP 91
+ +C+S+QVGCKM C FCA+ GF NLS GE+V+Q+++A + I NVV MG GEP
Sbjct: 100 NAICVSTQVGCKMNCRFCASTIGGFVRNLSPGEMVDQIINAENFTGKRITNVVLMGSGEP 159
Query: 92 LNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPG-LNLAVSLHAPVQ 149
+N + + + I+ + + + IT+STVGIV I + D P +NLA+SLHAP
Sbjct: 160 FDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRL-CDFPKQVNLAISLHAPNN 218
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
+R +++P + +P+E +M A+ Y K + +++ EY ++DGVND + A +LGK+L+
Sbjct: 219 SLRDKLVPINKKYPVEDIMKAVDYYIKRTNRRVTFEYALIDGVNDSIECAQELGKMLKGK 278
Query: 210 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V VNLIP NP+ FR S +K+ +F + LR SY I+ T+R+++G IS ACGQL
Sbjct: 279 LVHVNLIPVNPVEE-KGFRRPSKEKIKAFFETLR-SYQIQVTIRRELGSSISAACGQL 334
>gi|430760187|ref|YP_007216044.1| Ribosomal RNA large subunit methyltransferase N [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430009811|gb|AGA32563.1| Ribosomal RNA large subunit methyltransferase N [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 377
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 154/257 (59%), Gaps = 14/257 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS--------RLSNI 80
P R TLCISSQVGC + C FC+T GF NLS+ EI+ QL A+ R +
Sbjct: 102 PEDDRGTLCISSQVGCALDCTFCSTAQQGFNRNLSAHEIIGQLWLANQRVPVPEGRSRAV 161
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVVFMGMGEPL N A+V+A+ +M + +S +R+TVST G+V A+++ + +
Sbjct: 162 TNVVFMGMGEPLANLDAVVDAIDLMLDDNAYGLSKRRVTVSTSGLVPALDRLGA-ATDVA 220
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS--QQKIFIEYIMLDGVNDEEQ 197
LAVSLHAP +R +++P R +P+ +L+NA + Y ++ ++ EY++L G+ND+ +
Sbjct: 221 LAVSLHAPNDALRNRLVPINRKYPIHELLNACRRYTRDGARHHRVTFEYVLLAGINDQPR 280
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA +L LL +NLIPFNP S F S + V F+K+L + + T VR+ G
Sbjct: 281 HARELMALLRDVPCKINLIPFNPFPG-SPFVRPSSNAVRVFEKLLDDAGFV-TIVRRTRG 338
Query: 258 QDISGACGQLVVNLPDK 274
DI ACGQLV + D+
Sbjct: 339 DDIDAACGQLVGEVADR 355
>gi|410663508|ref|YP_006915879.1| radical SAM enzyme, Cfr family protein [Simiduia agarivorans SA1 =
DSM 21679]
gi|409025865|gb|AFU98149.1| radical SAM enzyme, Cfr family protein [Simiduia agarivorans SA1 =
DSM 21679]
Length = 385
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 159/258 (61%), Gaps = 16/258 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R TLC+SSQ+GC + C+FCATG GF +L++ EI+ Q+ A++
Sbjct: 107 PDGERGTLCVSSQIGCSLDCSFCATGKQGFNRDLTAAEIIAQVWIAAKSFGQLGVNGPRK 166
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ +V+A+ +M + +S +R+T+ST G+V A+++ +
Sbjct: 167 VTNVVLMGMGEPLLNFDNVVDAMSLMMHDNCYGISKRRVTLSTSGVVPALDRL-GEYTDA 225
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK---NSQQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +++P + +P+ L+++ K Y + ++ +KI IEY ++D VND
Sbjct: 226 CLAISLHAPNDALRNELVPINKKYPIAMLLDSAKRYIEQLPDTHRKITIEYTLIDHVNDR 285
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L +LL V +NLIPFNP S S ++ S++ + FQ IL S + TTVR
Sbjct: 286 PEHAHELAELLRDVPVKINLIPFNPF-SQSDYKRVSNNALRRFQTILIESGYV-TTVRTT 343
Query: 256 MGQDISGACGQLVVNLPD 273
G DI ACGQL ++ D
Sbjct: 344 RGDDIDAACGQLAGSVND 361
>gi|315918044|ref|ZP_07914284.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
ATCC 25563]
gi|317058012|ref|ZP_07922497.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
gi|313683688|gb|EFS20523.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
gi|313691919|gb|EFS28754.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
ATCC 25563]
Length = 349
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 108/273 (39%), Positives = 155/273 (56%), Gaps = 20/273 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G +E V++R+ R+TLCISSQVGC + C+FCATG GF NL
Sbjct: 87 EDGNTIETVLLRHRDQ-------------RNTLCISSQVGCPVKCSFCATGQDGFVRNLR 133
Query: 64 SGEIVEQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRI 117
EI+ Q+ R N R N+VFMGMGEPL N AL++A+ I++ +S +RI
Sbjct: 134 VSEILNQVYTVERRLNKRGEKLTNLVFMGMGEPLINIEALLKALEILSSEEGICISKRRI 193
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+ST GIV AI + + + LAVSLH+ + + R QI+P +A+PLE L L EYQ+
Sbjct: 194 TISTSGIVPAIERILMEKVPVELAVSLHSAINEKRDQIIPINKAYPLEDLAAVLGEYQRQ 253
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
+++++ EYI++ N E A+ L F VVNLIP NP+ R S+ K+
Sbjct: 254 TKRRLTFEYILIKDFNVSEGDANALADFAHQFDHVVNLIPCNPVADTGLER-PSEKKIER 312
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
F L+ + ++R++ G DI GACGQL N
Sbjct: 313 FYDYLKNVRKVNVSLRQEKGTDIDGACGQLRQN 345
>gi|406945406|gb|EKD76900.1| Ribosomal RNA large subunit methyltransferase N [uncultured
bacterium]
Length = 374
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 109/253 (43%), Positives = 153/253 (60%), Gaps = 10/253 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-SRLSN----IRNV 83
P R TLC+SSQVGC + C+FC+TG GF NLS EI+ QL A +L N I NV
Sbjct: 99 PEKTRGTLCVSSQVGCALNCSFCSTGKEGFNRNLSLAEIIGQLFLARDKLKNTPHQITNV 158
Query: 84 VFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 142
V MGMGEPL NY +++A+ +M L + +S R+T+ST G+V + +F D +LAV
Sbjct: 159 VMMGMGEPLLNYQPVIDAMELMMHDLAYGLSKYRVTLSTSGVVPQLLQFKKDSIA-SLAV 217
Query: 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
SLHAP ++R Q++P + +PLE LM ++Y +S++ I EY+ML G+ND A Q
Sbjct: 218 SLHAPTNELREQLVPINKKYPLEVLMPVCRDYFPTDSKRCIVFEYVMLKGINDSLLQAKQ 277
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L +LL+ +NLIPFNP + + S + +FQ L + ++T VRK G DI
Sbjct: 278 LIRLLDNMPCKINLIPFNPFPK-TDYVCSDMQTILAFQDRLTKA-GVKTWVRKTRGDDID 335
Query: 262 GACGQLVVNLPDK 274
GACGQL + D+
Sbjct: 336 GACGQLAGDFKDR 348
>gi|300724166|ref|YP_003713483.1| pyruvate formate lyase activating enzyme 2 [Xenorhabdus nematophila
ATCC 19061]
gi|297630700|emb|CBJ91365.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
nematophila ATCC 19061]
Length = 392
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 118 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRP 177
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 178 ITNVVMMGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 236
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E+ + ++ Y S Q ++ +EY+MLD VND
Sbjct: 237 ALAISLHAPTDDIRDEIVPINRKYNIEEFLAGVRRYLTKSNANQGRVTVEYVMLDHVNDS 296
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 297 VEQAHQLAECLKDTPSKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 354
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 355 RGDDIDAACGQLAGDVIDR 373
>gi|289551002|ref|YP_003471906.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
lugdunensis HKU09-01]
gi|289180534|gb|ADC87779.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
lugdunensis HKU09-01]
Length = 364
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 157/273 (57%), Gaps = 22/273 (8%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ Q+G +E V+MR+D +++C+++QVGC++GC FCA+ G K
Sbjct: 98 FELQDGYTIETVLMRHDYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKR 143
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSP 114
NL +GEIV Q++ + + +V MG+GEP NY +++ +RI+ +
Sbjct: 144 NLEAGEIVSQVLTVQKALDATEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGA 203
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST GIV I F + +N AVSLHA DVR ++MP RA+ ++KLM A++ Y
Sbjct: 204 RHITVSTSGIVPRIYDFADEGIQINFAVSLHAAKDDVRSKLMPINRAYNVDKLMEAIRYY 263
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
Q+ + ++I EY + GVND+ +HA +L L++ VNLIP N + + +TS DD
Sbjct: 264 QQKTNRRITFEYGLFGGVNDQLEHARELAHLIKNLNCHVNLIPVNHVPERNYVKTSKDD- 322
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F+K L+ + T+R++ G DI ACGQL
Sbjct: 323 IFKFEKELK-RLGVNATIRREQGSDIDAACGQL 354
>gi|240950291|ref|ZP_04754566.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305]
gi|240295193|gb|EER46001.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305]
Length = 386
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 112 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNFGVTGVRP 171
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM + +S +R+T+ST G+V A++ + +
Sbjct: 172 ITNVVMMGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKI-DV 230
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ +Y + S K+ IEY+MLD +NDE
Sbjct: 231 ALAISLHAPNDEIRDEIVPINKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLDHINDE 290
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HAHQL K+L+ +NLIP+NP + + SS+ ++ FQK L Y T+RK
Sbjct: 291 VDHAHQLAKVLKNTPCKINLIPWNPFPE-APYAKSSNSRIDRFQKALM-EYGFTVTIRKT 348
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 349 RGDDIDAACGQLAGDVIDR 367
>gi|197285703|ref|YP_002151575.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
HI4320]
gi|227356214|ref|ZP_03840603.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906]
gi|425068640|ref|ZP_18471756.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW6]
gi|425071894|ref|ZP_18475000.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW4]
gi|254807194|sp|B4EZT6.1|RLMN_PROMH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|194683190|emb|CAR43831.1| radical SAM superfamily protein [Proteus mirabilis HI4320]
gi|227163678|gb|EEI48594.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906]
gi|404598263|gb|EKA98749.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW4]
gi|404599019|gb|EKA99481.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW6]
Length = 393
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 119 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAKIIGALKETGRRP 178
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ I M F +S +R+TVST G+V A++K +D +
Sbjct: 179 ITNVVMMGMGEPLLNLNNVIPALEIMMDDFGFGLSKRRVTVSTSGVVPALDKL-ADAVDV 237
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P + + +E ++ ++ Y S Q ++ +EY+MLD +ND
Sbjct: 238 ALAISLHAPTDDIRDEIVPINKKYNIEMFLDGVRRYIAKSNANQGRVTVEYVMLDHINDS 297
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 298 TEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 355
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 356 RGDDIDAACGQLAGDVIDR 374
>gi|345428624|ref|YP_004821740.1| hypothetical protein PARA_00390 [Haemophilus parainfluenzae T3T1]
gi|419802385|ref|ZP_14327572.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parainfluenzae
HK262]
gi|419846048|ref|ZP_14369306.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parainfluenzae
HK2019]
gi|301154683|emb|CBW14146.1| predicted enzyme [Haemophilus parainfluenzae T3T1]
gi|385190247|gb|EIF37695.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parainfluenzae
HK262]
gi|386414678|gb|EIJ29230.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parainfluenzae
HK2019]
Length = 382
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 107 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 166
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ D +
Sbjct: 167 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMLR-DKIDV 225
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + ++ LM+++ Y + S K+ IEY++LD VND
Sbjct: 226 ALAISLHAPNDELRDEIMPINKKYNIKMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDG 285
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ +V FQK L Y VRK
Sbjct: 286 TEHAHQLAQVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVIVRKT 343
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 344 RGDDIDAACGQLAGDVIDR 362
>gi|225574500|ref|ZP_03783110.1| hypothetical protein RUMHYD_02577 [Blautia hydrogenotrophica DSM
10507]
gi|225038287|gb|EEG48533.1| 23S rRNA m2A2503 methyltransferase [Blautia hydrogenotrophica DSM
10507]
Length = 347
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 107/279 (38%), Positives = 163/279 (58%), Gaps = 19/279 (6%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G +E+V+MRY ++G +++CISSQVGC+MGC FCA+ G NL
Sbjct: 85 EDGNVIESVLMRY------HHG--------NSVCISSQVGCRMGCKFCASTIGGLTRNLR 130
Query: 64 SGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVS 120
S E+++Q+ RLS R NVV MG GEPL+NY L+ + ++TG +S + +TVS
Sbjct: 131 SSEMLDQIYRIQRLSQERVSNVVVMGTGEPLDNYENLLRFIELLTGEDGLHISQRNLTVS 190
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
T G+V I + + + LA+SLHAP + R ++MP A + ++++++A + Y + + +
Sbjct: 191 TCGLVPKIRQLADEKLQITLALSLHAPNDEKRKELMPIAYKYTMDEVLDACRYYFQKTGR 250
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
+I EY ++ GVND E+ A QL ++ VNLIP NP+ S FR S+ V +F K
Sbjct: 251 RITFEYSLVRGVNDFEEDACQLAGQIQDINCHVNLIPVNPVKERS-FRQSTRQAVENF-K 308
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 279
I I T+R++MG DI GACGQL D+ K
Sbjct: 309 IKLEKCGINVTIRREMGSDIDGACGQLRKRFIDEQKGKE 347
>gi|336246651|ref|YP_004590361.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
aerogenes KCTC 2190]
gi|444355373|ref|YP_007391517.1| Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
gi|334732707|gb|AEG95082.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
aerogenes KCTC 2190]
gi|443906203|emb|CCG33977.1| Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
Length = 388
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E +N+++ Y S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHELAALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|88703674|ref|ZP_01101390.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
gi|88702388|gb|EAQ99491.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
Length = 381
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 169/282 (59%), Gaps = 30/282 (10%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
GG VE V++ P G R+TLC+SSQVGC + C+FC+TG GF+ +LS+
Sbjct: 98 GGLVETVLI--------------PDGNRATLCVSSQVGCSLDCSFCSTGKQGFQRDLSAA 143
Query: 66 EIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPK 115
EI+ Q+ A + + + NVV MGMGEPL N+ +V A+ + M L + +S +
Sbjct: 144 EIIGQVWLAIKSYDAFQSGNGRVVTNVVMMGMGEPLLNFDNVVTAMNLMMDDLGYGISKR 203
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY- 174
R+T+ST G+V A++K +++ +LAVSLHAP ++R Q++P R +P+ +L+ + + Y
Sbjct: 204 RVTLSTSGVVPALDKL-AEVSEASLAVSLHAPNDELRNQLVPVNRRYPIAQLLASAQRYI 262
Query: 175 --QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 232
QK+ ++ + IEY ++ G+ND+ + A +L LL F +NLIPFNP + S + S
Sbjct: 263 DAQKDKKRVVTIEYTLMAGINDQPEQARELALLLADFPCKINLIPFNPFPN-SGYERPSG 321
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
+ VS F ++L + + TVR G DI ACGQLV + D+
Sbjct: 322 NAVSRFWQVLVDAGFV-VTVRTTRGDDIDAACGQLVGEVVDR 362
>gi|357392153|ref|YP_004906994.1| hypothetical protein KSE_52620 [Kitasatospora setae KM-6054]
gi|311898630|dbj|BAJ31038.1| hypothetical protein KSE_52620 [Kitasatospora setae KM-6054]
Length = 366
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 159/278 (57%), Gaps = 29/278 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE+V+MRY R T+CISSQ GC M C FCATG G NLS+
Sbjct: 103 DGTLVESVLMRYPD--------------RVTMCISSQAGCGMNCPFCATGQAGLTRNLST 148
Query: 65 GEIVEQLVHASR----------LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
EIVEQ+ R + + NVVFMGMGEPL NY ++ A+R +T F
Sbjct: 149 AEIVEQIASGMRDLRTGAVPGGEARLSNVVFMGMGEPLANYNRVLSAIRRLTDPSPDGFG 208
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V A+++F + LA+SLHAP ++R +++P + ++++++A
Sbjct: 209 LSQRGITVSTVGLVPAMHRFADEGLSCRLALSLHAPDDELRDELVPVNTRWKVDEVLDAA 268
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
Y + S +++ IEY ++ +ND+ A LG+L+ +V VNLIP NP S++ S
Sbjct: 269 WNYAEKSGRRVSIEYALIKDINDQAWRADLLGRLIRNRRVHVNLIPLNPTPG-SKWTASR 327
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
+ F + L+ ++ + TTVR GQ+I GACGQL
Sbjct: 328 PEDEREFVRRLQ-AHGVPTTVRDTRGQEIDGACGQLAA 364
>gi|172058977|ref|YP_001815437.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium
sibiricum 255-15]
gi|205829757|sp|B1YG36.1|RLMN_EXIS2 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|171991498|gb|ACB62420.1| radical SAM enzyme, Cfr family [Exiguobacterium sibiricum 255-15]
Length = 357
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 162/275 (58%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+MR+ L ++C+++QVGC +GC+FCA+G + +LS+
Sbjct: 87 DGSLIETVLMRHKYGL--------------SVCVTTQVGCNIGCSFCASGLIKKSRDLSA 132
Query: 65 GEIVEQLVHAS-------RLSNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSP 114
GEIVEQ+++ + + +VV MG+GEP +N+ +V+ + ++ GL +
Sbjct: 133 GEIVEQIMNVQHHLDAVGKEERVSHVVVMGIGEPFDNFDNMVDFLNVIKDHNGLA--IGA 190
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+ I KF +NLA+SLHAP ++R QIM RA PLEKLM A+ Y
Sbjct: 191 RHITVSTSGLADKIYKFADLKLQVNLAISLHAPNNELRTQIMKINRAIPLEKLMPAIDYY 250
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSD 232
K + +KI IEYI+L GVND++ A +L KL E + VNLIP+NP+ Q++ S+
Sbjct: 251 VKTTNRKITIEYILLRGVNDQKAQAIELAKLFEDKRHLTYVNLIPYNPVDEHGQYQRSTS 310
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +S+F L+ + + VR + G DI ACGQL
Sbjct: 311 EDISTFYDTLKKN-GLNCGVRLEHGTDIDAACGQL 344
>gi|312793230|ref|YP_004026153.1| radical sam enzyme, cfr family [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312180370|gb|ADQ40540.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 344
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 152/238 (63%), Gaps = 7/238 (2%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEP 91
+ +C+S+QVGCKM C FCA+ GF NLS GE+V+Q+++A + I NVV MG GEP
Sbjct: 100 NAICVSTQVGCKMNCRFCASTIGGFVRNLSPGEMVDQIINAENFTGKRITNVVLMGSGEP 159
Query: 92 LNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPG-LNLAVSLHAPVQ 149
+N + + + I+ + + + IT+STVGIV I + D P +NLA+SLHAP
Sbjct: 160 FDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRL-CDFPKQVNLAISLHAPNN 218
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
+R +++P + +P+E +M A+ Y K + +++ EY ++DGVND + A +LGK+L+
Sbjct: 219 SLRDKLVPINKKYPVEDIMKAVDYYIKRTNRRVTFEYALIDGVNDSIECAQELGKMLKGK 278
Query: 210 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V VNLIP NP+ FR S +K+ +F + LR SY I+ T+R+++G IS ACGQL
Sbjct: 279 LVHVNLIPVNPVEE-KGFRRPSKEKIKAFFETLR-SYQIQVTIRRELGSSISAACGQL 334
>gi|254283024|ref|ZP_04957992.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
gi|219679227|gb|EED35576.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
Length = 380
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 167/282 (59%), Gaps = 30/282 (10%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G VEAV++ P G R+TLC+SSQVGC + C FC+TG GF+ +L+S
Sbjct: 101 GALVEAVLI--------------PEGSRATLCVSSQVGCSLDCKFCSTGKQGFQRDLTSA 146
Query: 66 EIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPK 115
EI+ Q+ A + + + NVV MGMGEPL N+ +V ++ +MT + +S +
Sbjct: 147 EIIGQVWLAIKSYDAFQSGKGRVVTNVVMMGMGEPLLNFDNVVSSMSLMTDDWAYGLSKR 206
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY- 174
R+T+ST G+V A++K ++ ++LA+SLH P ++R +I+P + +P+ +L+ + + Y
Sbjct: 207 RVTLSTSGVVPALDKL-AECSDVSLAISLHGPTDEIRNRIVPINKRYPIAELLRSARNYI 265
Query: 175 --QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 232
Q ++++ + IEY +L GVND+ +HA QL LL+ F +NLIPFN S F S
Sbjct: 266 DAQSDTKRVVTIEYTLLAGVNDQVEHARQLAVLLKDFPCKINLIPFNDFPH-SGFTRPSG 324
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
+ VS F ++L + + TVR G DI ACGQLV + D+
Sbjct: 325 NAVSRFWQVLIDAGYV-VTVRTTRGDDIDAACGQLVGEVVDR 365
>gi|334705279|ref|ZP_08521145.1| ribosomal RNA large subunit methyltransferase N [Aeromonas caviae
Ae398]
Length = 367
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 150/254 (59%), Gaps = 11/254 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----IRNVV 84
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++ I NVV
Sbjct: 98 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLKVSEIIGQVWRAAKVVGGKRPITNVV 157
Query: 85 FMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N A +V A+++ M F +S +R+T+ST G+V A++ D + LA+S
Sbjct: 158 MMGMGEPLLNLANVVPAMKLMMDDFGFSISKRRVTLSTSGVVPALDML-GDQIDVALAIS 216
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAH 200
LHAP +R +IMP + +E + ++ Y S ++ +EY++LD +ND+ QHAH
Sbjct: 217 LHAPNDALRSEIMPINDKYNIEAFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAH 276
Query: 201 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
+L K+L+ +NLIPFNP + F S+ ++ F K+L Y + VRK G DI
Sbjct: 277 ELAKVLKETPCKINLIPFNPFPG-NPFGKPSNSRIDRFSKVLM-EYGLTVIVRKTRGDDI 334
Query: 261 SGACGQLVVNLPDK 274
ACGQLV + D+
Sbjct: 335 DAACGQLVGEVIDR 348
>gi|262066381|ref|ZP_06025993.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC
33693]
gi|291379946|gb|EFE87464.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC
33693]
Length = 358
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 155/273 (56%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDKGTIETVLLRHRDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQGGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R ++ N+VFMGMGEPL N L A+ I++ +S
Sbjct: 138 NLSVSEILNQVYTVERRLRKKDESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K + + LAVSLH+ + + R QI+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVPGIEKILLEKIPIELAVSLHSAINEKRDQIIPINKNFPLEDLSAVLVEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISEVDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSM-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IERFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|218768330|ref|YP_002342842.1| hypothetical protein NMA1522 [Neisseria meningitidis Z2491]
gi|385324024|ref|YP_005878463.1| hypothetical protein NMV_1088 [Neisseria meningitidis 8013]
gi|385338161|ref|YP_005892034.1| hypothetical protein NMAA_1039 [Neisseria meningitidis WUE 2594]
gi|416182800|ref|ZP_11612236.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M13399]
gi|421550805|ref|ZP_15996806.1| 23S rRNA methyltransferase [Neisseria meningitidis 69166]
gi|433471445|ref|ZP_20428831.1| 23S rRNA methyltransferase [Neisseria meningitidis 68094]
gi|433475156|ref|ZP_20432497.1| 23S rRNA methyltransferase [Neisseria meningitidis 88050]
gi|433477755|ref|ZP_20435075.1| 23S rRNA methyltransferase [Neisseria meningitidis 70012]
gi|433479825|ref|ZP_20437115.1| 23S rRNA methyltransferase [Neisseria meningitidis 63041]
gi|433513632|ref|ZP_20470422.1| 23S rRNA methyltransferase [Neisseria meningitidis 63049]
gi|433515920|ref|ZP_20472688.1| 23S rRNA methyltransferase [Neisseria meningitidis 2004090]
gi|433517705|ref|ZP_20474451.1| 23S rRNA methyltransferase [Neisseria meningitidis 96023]
gi|433520087|ref|ZP_20476807.1| 23S rRNA methyltransferase [Neisseria meningitidis 65014]
gi|433522022|ref|ZP_20478713.1| 23S rRNA methyltransferase [Neisseria meningitidis 61103]
gi|433524326|ref|ZP_20480987.1| 23S rRNA methyltransferase [Neisseria meningitidis 97020]
gi|433526413|ref|ZP_20483043.1| 23S rRNA methyltransferase [Neisseria meningitidis 69096]
gi|433528380|ref|ZP_20484989.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3652]
gi|433530581|ref|ZP_20487170.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3642]
gi|433532850|ref|ZP_20489413.1| 23S rRNA methyltransferase [Neisseria meningitidis 2007056]
gi|433534647|ref|ZP_20491187.1| 23S rRNA methyltransferase [Neisseria meningitidis 2001212]
gi|433539090|ref|ZP_20495566.1| 23S rRNA methyltransferase [Neisseria meningitidis 70030]
gi|433541165|ref|ZP_20497617.1| 23S rRNA methyltransferase [Neisseria meningitidis 63006]
gi|205829822|sp|A1ISB3.1|RLMN_NEIMA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121052338|emb|CAM08669.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
gi|261392411|emb|CAX49953.1| conserved hypothetical protein [Neisseria meningitidis 8013]
gi|319410575|emb|CBY90944.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
gi|325134450|gb|EGC57095.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M13399]
gi|402329342|gb|EJU64703.1| 23S rRNA methyltransferase [Neisseria meningitidis 69166]
gi|432208297|gb|ELK64275.1| 23S rRNA methyltransferase [Neisseria meningitidis 68094]
gi|432210974|gb|ELK66929.1| 23S rRNA methyltransferase [Neisseria meningitidis 88050]
gi|432215420|gb|ELK71309.1| 23S rRNA methyltransferase [Neisseria meningitidis 70012]
gi|432216164|gb|ELK72046.1| 23S rRNA methyltransferase [Neisseria meningitidis 63041]
gi|432247164|gb|ELL02603.1| 23S rRNA methyltransferase [Neisseria meningitidis 63049]
gi|432252846|gb|ELL08196.1| 23S rRNA methyltransferase [Neisseria meningitidis 2004090]
gi|432253441|gb|ELL08785.1| 23S rRNA methyltransferase [Neisseria meningitidis 96023]
gi|432254809|gb|ELL10143.1| 23S rRNA methyltransferase [Neisseria meningitidis 65014]
gi|432259570|gb|ELL14841.1| 23S rRNA methyltransferase [Neisseria meningitidis 97020]
gi|432259839|gb|ELL15109.1| 23S rRNA methyltransferase [Neisseria meningitidis 61103]
gi|432261177|gb|ELL16434.1| 23S rRNA methyltransferase [Neisseria meningitidis 69096]
gi|432265181|gb|ELL20377.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3652]
gi|432266673|gb|ELL21855.1| 23S rRNA methyltransferase [Neisseria meningitidis 2007056]
gi|432267088|gb|ELL22269.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3642]
gi|432271389|gb|ELL26514.1| 23S rRNA methyltransferase [Neisseria meningitidis 2001212]
gi|432273452|gb|ELL28550.1| 23S rRNA methyltransferase [Neisseria meningitidis 70030]
gi|432277178|gb|ELL32227.1| 23S rRNA methyltransferase [Neisseria meningitidis 63006]
Length = 364
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 155/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L+ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVTDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|238785318|ref|ZP_04629307.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
bercovieri ATCC 43970]
gi|238713771|gb|EEQ05794.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
bercovieri ATCC 43970]
Length = 398
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PEADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPTDDIRNEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 VEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|385784623|ref|YP_005760796.1| hypothetical protein SLUG_16850 [Staphylococcus lugdunensis
N920143]
gi|418414298|ref|ZP_12987513.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|339894879|emb|CCB54176.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
gi|410876905|gb|EKS24802.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 364
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 157/273 (57%), Gaps = 22/273 (8%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ Q+G +E V+MR+D +++C+++QVGC++GC FCA+ G K
Sbjct: 98 FELQDGYTIETVLMRHDYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKR 143
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSP 114
NL +GEIV Q++ + + +V MG+GEP NY +++ +RI+ +
Sbjct: 144 NLEAGEIVSQVLTVQKALDATEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGA 203
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST GIV I F + +N AVSLHA DVR ++MP RA+ ++KLM A++ Y
Sbjct: 204 RHITVSTSGIVPRIYDFADEGIQINFAVSLHAAKDDVRSKLMPINRAYNVDKLMEAIRYY 263
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
Q+ + ++I EY + GVND+ +HA +L L++ VNLIP N + + +TS DD
Sbjct: 264 QQKTNRRITFEYGLFGGVNDQLEHARELAHLIKNLNCNVNLIPVNHVPERNYVKTSKDD- 322
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F+K L+ + T+R++ G DI ACGQL
Sbjct: 323 IFKFEKELK-RLGVNATIRREQGSDIDAACGQL 354
>gi|416161426|ref|ZP_11606391.1| radical SAM enzyme, Cfr family [Neisseria meningitidis N1568]
gi|421557411|ref|ZP_16003316.1| 23S rRNA methyltransferase [Neisseria meningitidis 80179]
gi|421561379|ref|ZP_16007227.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2657]
gi|433469505|ref|ZP_20426926.1| 23S rRNA methyltransferase [Neisseria meningitidis 98080]
gi|433473705|ref|ZP_20431066.1| 23S rRNA methyltransferase [Neisseria meningitidis 97021]
gi|433482269|ref|ZP_20439529.1| 23S rRNA methyltransferase [Neisseria meningitidis 2006087]
gi|433484252|ref|ZP_20441478.1| 23S rRNA methyltransferase [Neisseria meningitidis 2002038]
gi|433486519|ref|ZP_20443714.1| 23S rRNA methyltransferase [Neisseria meningitidis 97014]
gi|254670500|emb|CBA06240.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|325128395|gb|EGC51278.1| radical SAM enzyme, Cfr family [Neisseria meningitidis N1568]
gi|402335049|gb|EJU70324.1| 23S rRNA methyltransferase [Neisseria meningitidis 80179]
gi|402338842|gb|EJU74072.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2657]
gi|432203775|gb|ELK59825.1| 23S rRNA methyltransferase [Neisseria meningitidis 98080]
gi|432210003|gb|ELK65969.1| 23S rRNA methyltransferase [Neisseria meningitidis 97021]
gi|432216062|gb|ELK71945.1| 23S rRNA methyltransferase [Neisseria meningitidis 2006087]
gi|432220938|gb|ELK76755.1| 23S rRNA methyltransferase [Neisseria meningitidis 2002038]
gi|432221804|gb|ELK77608.1| 23S rRNA methyltransferase [Neisseria meningitidis 97014]
Length = 364
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 155/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L+ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVTDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|282890654|ref|ZP_06299177.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175218|ref|YP_004652028.1| ribosomal RNA large subunit methyltransferase N 2 [Parachlamydia
acanthamoebae UV-7]
gi|281499651|gb|EFB41947.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336479576|emb|CCB86174.1| ribosomal RNA large subunit methyltransferase N 2 [Parachlamydia
acanthamoebae UV-7]
Length = 350
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 151/252 (59%), Gaps = 9/252 (3%)
Query: 30 GGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRN-----VV 84
G R T+C+SSQVGC C FCA+G GF NL EIVEQ+ ++ +N VV
Sbjct: 97 SGDRRTVCVSSQVGCPAKCAFCASGKQGFFRNLRPHEIVEQVFLINQWLKDKNERVSHVV 156
Query: 85 FMGMGEPLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
+MGMGEPL NY +++++R+++ +S +RITVSTVGIV I + + ++L +S
Sbjct: 157 YMGMGEPLKNYDPVIKSIRLLSNPELLNLSQRRITVSTVGIVEGIKRLSREELKVSLVLS 216
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 203
LHAP Q +R +I+P AR +PL+ +M A+ EY K +++ I EY ++ G+ND HA +L
Sbjct: 217 LHAPNQHIRQKIIPYARKYPLDAIMEAMDEYAKLTKRDITFEYTLIAGINDHPDHAFELT 276
Query: 204 KLLE-TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
LL Q VNLIP+NP+ + + + + F+ +L G+ + T R G DI+
Sbjct: 277 HLLHGKSQFTVNLIPYNPVPGL-RLKRPEKKAIKQFRAVLFGA-KVVNTCRYTKGDDIAA 334
Query: 263 ACGQLVVNLPDK 274
ACGQL + +K
Sbjct: 335 ACGQLALQELEK 346
>gi|298372852|ref|ZP_06982842.1| radical SAM enzyme, Cfr family [Bacteroidetes oral taxon 274 str.
F0058]
gi|298275756|gb|EFI17307.1| radical SAM enzyme, Cfr family [Bacteroidetes oral taxon 274 str.
F0058]
Length = 342
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 143/242 (59%), Gaps = 8/242 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R TLC+S QVGC+M C FC TG GF NLS+GEI+ Q++ NI N+VFMGM
Sbjct: 96 PDDDRRTLCVSCQVGCRMSCRFCMTGRCGFAGNLSAGEIINQVLSVDEAKNITNIVFMGM 155
Query: 89 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GEP +N ++ A+ I+T GL + SPKRITVST G+ I F D +LA+SLH
Sbjct: 156 GEPFDNLGEVLRAIEILTSEWGLAY--SPKRITVSTSGLRKGIETF-LDNTQCHLAISLH 212
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 205
P D R ++MP + +E+++ L Y Q+++ EYI+ +G+ND +HA + +L
Sbjct: 213 NPFADERAKMMPVEHSDHIEEVVTLLHRYDFAHQRRLSFEYIVFEGINDSVRHAEGIVRL 272
Query: 206 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 265
L VNLI F+ + + R+ +K+ F+ L + I +T+R+ G+DI ACG
Sbjct: 273 LRGLFCRVNLIRFHEVADLD-LRSPDKNKMEHFRDYL-NRHGIISTIRRSRGEDIEAACG 330
Query: 266 QL 267
QL
Sbjct: 331 QL 332
>gi|15677174|ref|NP_274327.1| hypothetical protein NMB1308 [Neisseria meningitidis MC58]
gi|385341775|ref|YP_005895646.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240149]
gi|385853062|ref|YP_005899576.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|385857379|ref|YP_005903891.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NZ-05/33]
gi|416170615|ref|ZP_11608367.1| radical SAM enzyme, Cfr family [Neisseria meningitidis OX99.30304]
gi|416187679|ref|ZP_11614291.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M0579]
gi|416196373|ref|ZP_11618143.1| radical SAM enzyme, Cfr family [Neisseria meningitidis CU385]
gi|418288492|ref|ZP_12900973.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM233]
gi|418290737|ref|ZP_12902857.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM220]
gi|421540565|ref|ZP_15986710.1| 23S rRNA methyltransferase [Neisseria meningitidis 93004]
gi|421559264|ref|ZP_16005139.1| 23S rRNA methyltransferase [Neisseria meningitidis 92045]
gi|421567660|ref|ZP_16013394.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3001]
gi|427827981|ref|ZP_18995000.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|433465256|ref|ZP_20422738.1| 23S rRNA methyltransferase [Neisseria meningitidis NM422]
gi|433488593|ref|ZP_20445755.1| 23S rRNA methyltransferase [Neisseria meningitidis M13255]
gi|433490636|ref|ZP_20447762.1| 23S rRNA methyltransferase [Neisseria meningitidis NM418]
gi|433504965|ref|ZP_20461904.1| 23S rRNA methyltransferase [Neisseria meningitidis 9506]
gi|433507319|ref|ZP_20464227.1| 23S rRNA methyltransferase [Neisseria meningitidis 9757]
gi|433509250|ref|ZP_20466119.1| 23S rRNA methyltransferase [Neisseria meningitidis 12888]
gi|433511525|ref|ZP_20468352.1| 23S rRNA methyltransferase [Neisseria meningitidis 4119]
gi|81784539|sp|Q9JZ42.1|RLMN_NEIMB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|7226549|gb|AAF41683.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316984107|gb|EFV63085.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|325130328|gb|EGC53094.1| radical SAM enzyme, Cfr family [Neisseria meningitidis OX99.30304]
gi|325136188|gb|EGC58796.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M0579]
gi|325140467|gb|EGC62988.1| radical SAM enzyme, Cfr family [Neisseria meningitidis CU385]
gi|325200066|gb|ADY95521.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|325201981|gb|ADY97435.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240149]
gi|325208268|gb|ADZ03720.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NZ-05/33]
gi|372201111|gb|EHP15078.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM220]
gi|372201790|gb|EHP15672.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM233]
gi|402318719|gb|EJU54235.1| 23S rRNA methyltransferase [Neisseria meningitidis 93004]
gi|402336659|gb|EJU71919.1| 23S rRNA methyltransferase [Neisseria meningitidis 92045]
gi|402343693|gb|EJU78839.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3001]
gi|432203200|gb|ELK59254.1| 23S rRNA methyltransferase [Neisseria meningitidis NM422]
gi|432223426|gb|ELK79207.1| 23S rRNA methyltransferase [Neisseria meningitidis M13255]
gi|432227627|gb|ELK83336.1| 23S rRNA methyltransferase [Neisseria meningitidis NM418]
gi|432241090|gb|ELK96620.1| 23S rRNA methyltransferase [Neisseria meningitidis 9506]
gi|432241684|gb|ELK97213.1| 23S rRNA methyltransferase [Neisseria meningitidis 9757]
gi|432246638|gb|ELL02084.1| 23S rRNA methyltransferase [Neisseria meningitidis 12888]
gi|432247573|gb|ELL03010.1| 23S rRNA methyltransferase [Neisseria meningitidis 4119]
Length = 364
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 155/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L+ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVTDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|344199654|ref|YP_004783980.1| ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
ferrivorans SS3]
gi|343775098|gb|AEM47654.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
ferrivorans SS3]
Length = 363
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 155/250 (62%), Gaps = 9/250 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---SNIRNVVF 85
P R TLCISSQVGC + C+FCATG G NL + EI+ Q+ A RL + I NVVF
Sbjct: 107 PEEDRGTLCISSQVGCSLACSFCATGAQGLSRNLETHEIIAQVRVARRLLGLNAITNVVF 166
Query: 86 MGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
MGMGEPL N ++ A+ ++ + + +RITVST G+V +++ ++ P +NLA+SL
Sbjct: 167 MGMGEPLLNLRHVLPALDLLRDDYAYGLGARRITVSTAGVVPGMDRLGTESP-VNLAISL 225
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
HA D+R ++P R +PL +L+ A + Y +++I EY+MLDG+ND + HA +L +
Sbjct: 226 HASRDDIRDILVPVNRHYPLAELLAACRRYPLPPRRRITFEYVMLDGLNDADTHARELLR 285
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK-ILRGSYNIRTTVRKQMGQDISGA 263
LL +VNLIPFNP S ++ S ++ +F+ ILRG ++ T R+ G DI+ A
Sbjct: 286 LLRDIPAMVNLIPFNPFPG-SNYKRSPQLRIDAFRDIILRG--DVMTVTRRPRGDDIAAA 342
Query: 264 CGQLVVNLPD 273
CGQL + D
Sbjct: 343 CGQLAGQVRD 352
>gi|424862911|ref|ZP_18286824.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86A]
gi|400757532|gb|EJP71743.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86A]
Length = 359
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 156/257 (60%), Gaps = 10/257 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA--SRLSN--IRNVV 84
P G R TLCISSQ GC + C FCATG GF NL+S EI+ QL A ++ +N I NVV
Sbjct: 98 PEGKRRTLCISSQAGCALACTFCATGAQGFDQNLNSSEIIGQLWLANFNKKNNKLITNVV 157
Query: 85 FMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
FMGMGEPL N+ A++E+ +IM L + +S KRIT+ST GIV I K ++ + ++LA+S
Sbjct: 158 FMGMGEPLLNFDAVIESAKIMKDQLGYGLSRKRITISTAGIVPNIKKLNNYVD-VSLAIS 216
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
LHA +R +I+P + +P+EKL+NA ++Y ++N ++ + IEYI++ VND + A
Sbjct: 217 LHASNDVLRDEIVPINKKYPIEKLLNACQDYLGKENKRKHVTIEYILIKNVNDSLEDAKG 276
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L KLL +NLIPFN S + + ++ F+ L I T+R G +
Sbjct: 277 LVKLLSKLPCKINLIPFNSFNG-SNYERPCNKTINDFKSFLINKGFI-ATLRTTRGDGVD 334
Query: 262 GACGQLVVNLPDKISAK 278
ACGQLV NL I K
Sbjct: 335 AACGQLVGNLTKSIKGK 351
>gi|329930082|ref|ZP_08283701.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
gi|328935341|gb|EGG31816.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
Length = 346
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 106/269 (39%), Positives = 158/269 (58%), Gaps = 25/269 (9%)
Query: 8 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 67
++E+V + Y + Y CISSQ GC GC FCATGT+G K NL++ EI
Sbjct: 87 YIESVRLSYQTGWESY-------------CISSQCGCGFGCTFCATGTLGLKRNLTTDEI 133
Query: 68 VEQLVHASRLSN--IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGI 124
+QL++ + L+N + +V FMGMGE L N + +A+ ++T F + +RITVST+G+
Sbjct: 134 TDQLLYFT-LNNHPLDSVSFMGMGEALAN-PYVFDALHVLTDPKLFGLGHRRITVSTIGL 191
Query: 125 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 184
+ + K + P +NL SLH+P D R ++MP FPLE++M L E+ + +++K++I
Sbjct: 192 IPGVKKLTKEFPQINLTFSLHSPFHDQRSELMPINNHFPLEEVMTVLDEHIQQTKRKVYI 251
Query: 185 EYIMLDGVNDEEQHAHQLGKLLE-----TFQVVVNLIPFNPIGSVSQ-FRTSSDDKVSSF 238
YI+L G+ND +HA + LL VNLIP+N + SQ F S + ++ F
Sbjct: 252 AYILLRGINDSTKHAEAVADLLRGRGPWEHLYHVNLIPYNSTDATSQSFVESDQNSINMF 311
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQL 267
+IL+ S I TVR Q G DI+ ACGQL
Sbjct: 312 LRILK-SKGIHVTVRTQFGSDINAACGQL 339
>gi|163848485|ref|YP_001636529.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus
aurantiacus J-10-fl]
gi|222526414|ref|YP_002570885.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus sp.
Y-400-fl]
gi|205829697|sp|A9WFY6.1|RLMN_CHLAA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|163669774|gb|ABY36140.1| radical SAM enzyme, Cfr family [Chloroflexus aurantiacus J-10-fl]
gi|222450293|gb|ACM54559.1| radical SAM enzyme, Cfr family [Chloroflexus sp. Y-400-fl]
Length = 376
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 155/280 (55%), Gaps = 33/280 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE V+M Y RST+C+S+Q GC MGC FCATG +G NLSS
Sbjct: 91 DGAVVETVLMVYPD--------------RSTVCVSTQAGCGMGCVFCATGQLGLLRNLSS 136
Query: 65 GEIVEQLVHASR----------LSNIRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVS 113
GEIV Q + AS+ + N+VFMGMGEP NY +AV R+ F +
Sbjct: 137 GEIVAQAIWASQELRAMGMAGPTGRVSNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLG 196
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
+ +TVSTVG+V I + ++ +NLA+SLHAP +R ++MP R +P+ LM A +
Sbjct: 197 ARSMTVSTVGLVKGIERLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRN 256
Query: 174 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE------TFQVVVNLIPFNPIGSVSQF 227
Y +++++ EY++L G ND A L +LL VNLIP+NP+
Sbjct: 257 YIAKTRRRVSFEYVLLQGKNDHPHQAIALARLLRHSAPRGPLLFHVNLIPWNPVPGTPLG 316
Query: 228 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
R S ++V++FQ+IL Y I TVR + G +I+ ACGQL
Sbjct: 317 R-SEWERVTTFQQIL-TDYGIPCTVRVERGVEIAAACGQL 354
>gi|329897039|ref|ZP_08271811.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
gi|328921479|gb|EGG28865.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
Length = 383
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 172/283 (60%), Gaps = 30/283 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
GG VE+V++ P G R+TLC+SSQVGC + C+FC+TG GF+ +L++
Sbjct: 97 EGGLVESVLI--------------PDGDRATLCVSSQVGCSLDCSFCSTGKQGFERDLTA 142
Query: 65 GEIVEQLVHA---------SRLSNIRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSP 114
+I+ Q+ A + + NVV MGMGEPL N+ A+V A+ + M L + +S
Sbjct: 143 SDIIGQVWLAIDSFDAFQPGKDRVVTNVVMMGMGEPLLNFDAVVSAMDLMMDDLAYGLSK 202
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+R+T+ST G+V A++K +++ ++LAVSLHAP +R Q++P + +P+ +L+ + + Y
Sbjct: 203 RRVTLSTSGVVPALDKL-AEVSCVSLAVSLHAPNDALRNQLVPINKKYPIAELLASAQRY 261
Query: 175 ---QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
Q + ++ + IEY ++ GVND+ +HA +L LL+ F +NLIPFN S ++ S
Sbjct: 262 LDAQNDRKRVVTIEYTLIAGVNDQPEHARELAVLLKNFPCKINLIPFNAFPG-SSYQRPS 320
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
+ VS F ++L + I TVR G DIS ACGQLV ++ D+
Sbjct: 321 GNAVSRFWQVLIDAGFI-VTVRTTRGDDISAACGQLVGDVVDR 362
>gi|365836071|ref|ZP_09377478.1| 23S rRNA m2A2503 methyltransferase [Hafnia alvei ATCC 51873]
gi|364564882|gb|EHM42625.1| 23S rRNA m2A2503 methyltransferase [Hafnia alvei ATCC 51873]
Length = 419
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 145 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAHKVTGQRP 204
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A+ K D+ +
Sbjct: 205 ITNVVMMGMGEPLLNLNNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALEKL-GDMIDV 263
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P R + +E + A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 264 ALAISLHAPTDEIRDEIVPINRKYNIETFLGAVRRYLEKSNANQGRVTVEYVMLDHINDG 323
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y VRK
Sbjct: 324 MEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTVIVRKT 381
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 382 RGDDIDAACGQLAGDVIDR 400
>gi|387129969|ref|YP_006292859.1| ribosomal RNA large subunit methyltransferase N [Methylophaga sp.
JAM7]
gi|386271258|gb|AFJ02172.1| Ribosomal RNA large subunit methyltransferase N [Methylophaga sp.
JAM7]
Length = 281
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 149/257 (57%), Gaps = 14/257 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P G R TLC+SSQVGC + C FC+TG GF NLS+ EI+ QL A+ +
Sbjct: 13 PEGNRGTLCVSSQVGCALTCTFCSTGQQGFNRNLSAAEIIAQLWVANDALKKDPKGNRVV 72
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL NY +V A+RIM + +S +R+T+ST G+V I++ D P ++
Sbjct: 73 TNVVMMGMGEPLANYLNVVRAMRIMRDDYGYGISWRRLTLSTSGMVPMIDRLKEDCP-VS 131
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQ 197
LA+SLHA +R +++P +P+ L+ A Y QQ+ I IEY+ML GVND Q
Sbjct: 132 LAISLHAANDTLRSEMIPLNDKYPIADLLAACHRYVSGGQQRRHITIEYVMLAGVNDSAQ 191
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
A L +LL+ +NLIPFNP + +R SS + F++ L + I TVRK G
Sbjct: 192 DARDLIRLLKGLPNKINLIPFNPFPG-THYRCSSRKNLERFKQQLIDAGQI-VTVRKTRG 249
Query: 258 QDISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 250 DDIVAACGQLAGEVKDK 266
>gi|170718501|ref|YP_001783713.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus
2336]
gi|205829771|sp|B0UWR0.1|RLMN_HAES2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829859|sp|Q0I3U8.2|RLMN_HAES1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|168826630|gb|ACA32001.1| radical SAM enzyme, Cfr family [Haemophilus somnus 2336]
Length = 372
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 97 PETDRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 156
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ +
Sbjct: 157 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDV 215
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ LM ++ Y S K+ IEY+MLD +ND
Sbjct: 216 ALAISLHAPNDELRNEIVPINKKYNIKMLMESVNRYLNVSNANHGKVTIEYVMLDHINDG 275
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 276 TEHAHQLAEVLKNTPCKINLIPWNPFPD-APYAKSSNTRIDRFQKTLM-EYGFTVILRKT 333
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 334 RGDDIDAACGQLAGDVIDR 352
>gi|125973091|ref|YP_001037001.1| ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum ATCC 27405]
gi|256004594|ref|ZP_05429572.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360]
gi|281417286|ref|ZP_06248306.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20]
gi|385779008|ref|YP_005688173.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 1313]
gi|419721503|ref|ZP_14248666.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum AD2]
gi|419725127|ref|ZP_14252180.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum YS]
gi|205829739|sp|A3DCX9.1|RLMN_CLOTH RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|125713316|gb|ABN51808.1| radical SAM enzyme, Cfr family [Clostridium thermocellum ATCC
27405]
gi|255991466|gb|EEU01570.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360]
gi|281408688|gb|EFB38946.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20]
gi|316940688|gb|ADU74722.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 1313]
gi|380771448|gb|EIC05315.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum YS]
gi|380782443|gb|EIC12078.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum AD2]
Length = 349
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 170/272 (62%), Gaps = 19/272 (6%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+M+Y L Y+ CISSQVGCKMGC FCA+ +GF NL+
Sbjct: 88 DGNIIESVLMQY---LHGYSA-----------CISSQVGCKMGCKFCASTGVGFVRNLTP 133
Query: 65 GEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 121
GE+++Q+ + + I NVV MG+GEPL+NY +V+ +R++ + + I+VST
Sbjct: 134 GEMLDQILTIQNDTKNRIGNVVIMGIGEPLDNYENVVKFLRLVNHKDGINLGARHISVST 193
Query: 122 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181
G+V I + + + L++SLHAP ++R +IMP + + ++K++ A K Y + + ++
Sbjct: 194 CGLVPEILRLAEEKIPVTLSISLHAPNDEIREKIMPINKRYSIDKIIEACKIYTETTNRR 253
Query: 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241
I EY M+DG+ND +++A +L K + VNLIP N + S + F+ SS +K+++F++I
Sbjct: 254 ITFEYAMIDGLNDSKENALELAKRIRGMLCHVNLIPVNTV-SDTGFKRSSREKITAFKEI 312
Query: 242 LRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 273
L + + TTVR+++G DI+ ACGQL NL +
Sbjct: 313 LE-RFGVETTVRRELGSDINAACGQLRRNLVE 343
>gi|145631818|ref|ZP_01787577.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae
R3021]
gi|144982537|gb|EDJ90091.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae
R3021]
Length = 383
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 108 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 167
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 168 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 226
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P R + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 227 ALAISLHAPNDELRDEIVPINRKYNIQMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDG 286
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y+ +RK
Sbjct: 287 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYDFTVIIRKT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 345 RGDDIDAACGQLAGDVIDR 363
>gi|407478596|ref|YP_006792473.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium
antarcticum B7]
gi|407062675|gb|AFS71865.1| Ribosomal RNA large subunit methyltransferase N [Exiguobacterium
antarcticum B7]
Length = 357
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 162/275 (58%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+MR+ L ++C+++QVGC +GC+FCA+G + +LS+
Sbjct: 87 DGSLIETVLMRHKYGL--------------SVCVTTQVGCNIGCSFCASGLIKKSRDLSA 132
Query: 65 GEIVEQLVHAS-------RLSNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSP 114
GEIVEQ+++ + + +VV MG+GEP +N+ +V+ + ++ GL +
Sbjct: 133 GEIVEQIMNVQHHLDAVGKEERVSHVVVMGIGEPFDNFDNMVDFLNVIKDHNGLA--IGA 190
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+ I KF +NLA+SLHAP ++R QIM RA PLEKLM A+ Y
Sbjct: 191 RHITVSTSGLADKIYKFADLKLQVNLAISLHAPNNELRTQIMKINRAIPLEKLMPAIDYY 250
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSD 232
K + +KI IEYI+L GVND++ A +L KL E + VNLIP+NP+ Q++ S+
Sbjct: 251 VKTTNRKITIEYILLRGVNDQKAQAIELAKLFEDKRHLTYVNLIPYNPVDEHGQYQRSTS 310
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +S+F L+ + + VR + G DI ACGQL
Sbjct: 311 EDISAFYDTLKKN-GLNCGVRLEHGTDIDAACGQL 344
>gi|377576744|ref|ZP_09805728.1| ribosomal RNA large subunit methyltransferase N [Escherichia
hermannii NBRC 105704]
gi|377542776|dbj|GAB50893.1| ribosomal RNA large subunit methyltransferase N [Escherichia
hermannii NBRC 105704]
Length = 388
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKKTGVRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + +E + A++ Y + S Q ++ +EY++LD +ND
Sbjct: 233 ALAISLHAPTDEIRDRIMPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVLLDHINDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHQLAECLKDTPCKLNLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 351 RGDDIDAACGQLAGEVIDR 369
>gi|320546296|ref|ZP_08040616.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812]
gi|320449073|gb|EFW89796.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812]
Length = 366
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 163/278 (58%), Gaps = 29/278 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+MR L ++C++SQVGC MGC+FCA+G + + +L+S
Sbjct: 93 DGMLIETVLMRQHYGL--------------SVCVTSQVGCNMGCSFCASGLIKKQRDLTS 138
Query: 65 GEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEI Q++ + + R +VV MG+GEP +NY ++ VR + GL +
Sbjct: 139 GEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYDNVLRFVRTINNDNGLA--IGA 196
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ IT+ST G+ H I +F + +NLAVSLHAP ++R QIM R+FPLEKL A++ Y
Sbjct: 197 RHITISTSGLAHKIREFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEKLFAAIEYY 256
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + +++ EYIML+ VND ++A +L L + + + +NLIP+NP+ Q+ SS
Sbjct: 257 VETTNRRVTFEYIMLNDVNDSPENAQELADLTKKIRKLSYINLIPYNPVSEHDQYSRSSK 316
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
+ V++F +L+ + + VR++ G DI ACGQL N
Sbjct: 317 EHVAAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSN 353
>gi|317490866|ref|ZP_07949302.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920413|gb|EFV41736.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 419
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 145 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAHKVTGQRP 204
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A+ K D+ +
Sbjct: 205 ITNVVMMGMGEPLLNLNNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALEKL-GDMIDV 263
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P R + +E + A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 264 ALAISLHAPTDEIRDEIVPINRKYNIETFLGAVRRYLEKSNANQGRVTVEYVMLDHINDG 323
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y VRK
Sbjct: 324 MEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTVIVRKT 381
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 382 RGDDIDAACGQLAGDVIDR 400
>gi|374262913|ref|ZP_09621473.1| radical SAM protein [Legionella drancourtii LLAP12]
gi|363536729|gb|EHL30163.1| radical SAM protein [Legionella drancourtii LLAP12]
Length = 378
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/262 (41%), Positives = 155/262 (59%), Gaps = 20/262 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL------------VHASR 76
P R TLC+SSQVGC + C+FC+T GF NLS+ EI+ Q+ VH R
Sbjct: 99 PEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAVRELSTNQGVHDKR 158
Query: 77 LSNIRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDL 135
L+ NVV MGMGEPL N+ +V A+ I M + +S +R+T+ST G++ + +
Sbjct: 159 LT---NVVMMGMGEPLLNFDNVVSAMNIMMDDFAYGLSKRRVTLSTSGVLPDLERLRQVS 215
Query: 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVND 194
P + LAVSLHAP ++R +++P + +PL +LM K Y K+ ++K+ EY+ML GVND
Sbjct: 216 P-VALAVSLHAPNDELRNELVPINKKYPLAQLMALCKIYFKDEPRRKVTFEYVMLKGVND 274
Query: 195 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 254
+ +HA QL KLL VNLIPFNP ++Q++ SS + +F+ L + I T RK
Sbjct: 275 QPEHATQLIKLLRDVPAKVNLIPFNPF-PMTQYQRSSQAAIDAFRDKLIAN-GINTITRK 332
Query: 255 QMGQDISGACGQLVVNLPDKIS 276
G DI ACGQL + D+ S
Sbjct: 333 TRGDDIDAACGQLAGEVKDRTS 354
>gi|383758612|ref|YP_005437597.1| ribosomal RNA large subunit methyltransferase N [Rubrivivax
gelatinosus IL144]
gi|381379281|dbj|BAL96098.1| ribosomal RNA large subunit methyltransferase N [Rubrivivax
gelatinosus IL144]
Length = 372
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/257 (44%), Positives = 155/257 (60%), Gaps = 14/257 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-RLSN------IR 81
P R TLC+SSQ GC +GC FC+TG GF NLS+GEI+ QL +A RL I
Sbjct: 96 PEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEIIAQLRYAEHRLRGPDGQRVID 155
Query: 82 NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 140
NVV MGMGEPL NY A+V A+R+M + +S +R+TVST G+V I++ D P + L
Sbjct: 156 NVVMMGMGEPLQNYTAVVPALRVMLDDHGYGLSRRRVTVSTSGMVAMIDRLREDCP-VAL 214
Query: 141 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHA 199
AVSLHAP +R ++P R +E L++A Y + + + I EY MLDGVND + A
Sbjct: 215 AVSLHAPNDALRDALVPINRKDGIEALLDACLRYVEAAPRDFITFEYCMLDGVNDAPEQA 274
Query: 200 HQLGKLLETFQV--VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
+L L+ +V NLIPFNP S + S ++V++F K+L+ + I TT+RK G
Sbjct: 275 LELVHLVRRRRVPCKFNLIPFNPFPE-SGLKRSPRERVTAFAKVLQDA-GIVTTIRKVRG 332
Query: 258 QDISGACGQLVVNLPDK 274
DI ACGQL + D+
Sbjct: 333 DDIDAACGQLAGEVQDR 349
>gi|114776700|ref|ZP_01451743.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1]
gi|114552786|gb|EAU55217.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1]
Length = 357
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/260 (40%), Positives = 155/260 (59%), Gaps = 10/260 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFM 86
PG R T CIS+QVGC +GC FC T T G NL++ E+V ++ R+S +RN+V M
Sbjct: 100 PGNGRLTQCISTQVGCAVGCTFCLTATAGLTRNLTAAEMVAEVTAGQRISGRQVRNLVLM 159
Query: 87 GMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
GMGEPL+NY + VR+ T G+ F SP R+T+ST G+V A+ + D NLAVS
Sbjct: 160 GMGEPLHNYDEVAHFVRLATDPKGMAF--SPNRVTLSTSGLVPAMQRMIRDELPCNLAVS 217
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQL 202
L+A VR IMP R +P+ L++ ++EY + +++ IEY++LDG+ND + A +L
Sbjct: 218 LNATNDAVRDTIMPINRKYPIAMLLDTVREYIRVRGNKRVLIEYVLLDGINDSQADAIRL 277
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
+L+ VNL+PFN + F+ +D VS+F+ IL + I T VR+ G+DI+
Sbjct: 278 CELMAGMGCTVNLLPFNAYPGLP-FQRPADAAVSAFRAILVEA-GIITVVRESKGRDIAA 335
Query: 263 ACGQLVVNLPDKISAKSTPP 282
ACGQL + + A P
Sbjct: 336 ACGQLKTEVVQRRKASRITP 355
>gi|256830852|ref|YP_003159580.1| radical SAM protein [Desulfomicrobium baculatum DSM 4028]
gi|256580028|gb|ACU91164.1| radical SAM enzyme, Cfr family [Desulfomicrobium baculatum DSM
4028]
Length = 360
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 161/263 (61%), Gaps = 17/263 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------SNIR 81
P R T C+S Q+GC MGC FC+TG MGF N++ GEI Q++ A ++
Sbjct: 95 PDKERYTQCLSCQIGCPMGCTFCSTGLMGFSRNMTGGEIAAQVLVARDYLRAHGLGDEVK 154
Query: 82 NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
N+V+MGMGEPL N+ + +++I++ GL F S +RIT+ST I ++ F + GL
Sbjct: 155 NLVYMGMGEPLTNWDEVRRSLQILSNAEGLEF--SRRRITLSTCAIKGKMDVF--GIEGL 210
Query: 139 NL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQ 197
L A+SLHAP Q++R +MP A +P+E+L+ AL+ + +++++ IEYI++ GVND Q
Sbjct: 211 ALPAISLHAPTQEIRESLMPGAARWPIEELIAALQGMELKARERVTIEYILIKGVNDSLQ 270
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL +LL + +NLI +NP G ++ + V +F+++LR T+RK G
Sbjct: 271 HARQLVRLLSHLKCKINLIAYNP-GPGIEYAAPAPGDVLAFEELLR-KKGFTVTLRKSKG 328
Query: 258 QDISGACGQLVVNLPDKISAKST 280
QDI+ ACGQL ++++ ++
Sbjct: 329 QDIAAACGQLKTEAQGRMNSTTS 351
>gi|251791823|ref|YP_003006543.1| Cfr family radical SAM protein [Aggregatibacter aphrophilus NJ8700]
gi|247533210|gb|ACS96456.1| radical SAM enzyme, Cfr family [Aggregatibacter aphrophilus NJ8700]
Length = 311
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 37 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 96
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 97 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 155
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 156 ALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDH 215
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 216 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 273
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 274 RGDDIDAACGQLAGDVIDR 292
>gi|315634916|ref|ZP_07890198.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393]
gi|315476468|gb|EFU67218.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393]
Length = 384
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 110 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 170 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDH 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 289 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|296113393|ref|YP_003627331.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
gi|416157002|ref|ZP_11604848.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1]
gi|416225542|ref|ZP_11626890.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1]
gi|416231838|ref|ZP_11628904.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1]
gi|416235984|ref|ZP_11630379.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1]
gi|416242273|ref|ZP_11633309.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7]
gi|416246881|ref|ZP_11635250.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8]
gi|416249828|ref|ZP_11636925.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72]
gi|416255365|ref|ZP_11639202.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E]
gi|421780199|ref|ZP_16216689.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
gi|295921087|gb|ADG61438.1| Cfr family radical SAM protein [Moraxella catarrhalis BBH18]
gi|326559237|gb|EGE09668.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1]
gi|326560775|gb|EGE11142.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1]
gi|326563516|gb|EGE13775.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1]
gi|326570119|gb|EGE20164.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8]
gi|326570857|gb|EGE20881.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7]
gi|326574406|gb|EGE24348.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1]
gi|326576000|gb|EGE25923.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72]
gi|326576412|gb|EGE26321.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E]
gi|407812993|gb|EKF83777.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
Length = 395
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 166/285 (58%), Gaps = 28/285 (9%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G VE V++ D GK G R TLCISSQVGC + C+FC+TG GF+ +L+
Sbjct: 104 GSLVETVLIPADD--GKQFG-------RKTLCISSQVGCALDCSFCSTGKQGFERDLTPS 154
Query: 66 EIVEQLVHAS-----------RLSNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVS 113
EI+ QL A+ R + + NVV MGMGEPL NY +V ++ +M F +S
Sbjct: 155 EIIGQLWVANQSYMENVPPTERENRVTNVVMMGMGEPLLNYDPVVASMSLMLDDHAFGLS 214
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
+R+T+ST G+V + D+ + LA+SLHAP ++R +++P + +PL+ L+ A K
Sbjct: 215 KRRVTLSTSGVVPKMYDLAKDI-DVALAISLHAPNDELRNELVPINKKYPLKDLIKAAKS 273
Query: 174 --YQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 229
Y +N + K I IEY+ML GVND ++HAHQL LL+ +NLIPFNP R
Sbjct: 274 YVYDENPRHKKHITIEYVMLAGVNDSDEHAHQLVDLLKDLPSKINLIPFNPFPHAPYGR- 332
Query: 230 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
SS++++ +F IL + T+R+ G DI ACGQLV + D+
Sbjct: 333 SSNNRIHAFSHILNQA-GFVCTIRQTRGDDIDAACGQLVGQVADR 376
>gi|410618485|ref|ZP_11329430.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola polaris LMG
21857]
gi|410162027|dbj|GAC33568.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola polaris LMG
21857]
Length = 380
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------ 79
P R+TLC+SSQVGC + C FC+T GF NLS EI+ Q+ + LSN
Sbjct: 105 PDADRATLCVSSQVGCALECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIGLSNDSSKRP 164
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ +M L F +S +R+T+ST G+V A++ D +
Sbjct: 165 ITNVVMMGMGEPLLNLKNVVPAMELMLDDLAFGLSKRRVTLSTSGVVPALD-ILGDKIDV 223
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +++P + +P+++ + ++ Y S Q K+ +EY+ML+GVND
Sbjct: 224 ALAISLHAPDDKLRDELVPVNKKYPIQEFLAGVRRYLAKSHANQGKVTVEYVMLNGVNDS 283
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AH L K+L +NLIPFNP S + SS+ ++ F K+L SY + VRK
Sbjct: 284 TDQAHALAKVLADTPCKLNLIPFNPYPG-SPYTRSSNSRIDRFAKVL-SSYGLMVVVRKT 341
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 342 RGDDIDAACGQLVGDVVDR 360
>gi|444377292|ref|ZP_21176524.1| Ribosomal RNA large subunit methyltransferase N [Enterovibrio sp.
AK16]
gi|443678582|gb|ELT85250.1| Ribosomal RNA large subunit methyltransferase N [Enterovibrio sp.
AK16]
Length = 373
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A++
Sbjct: 99 PEDDRATLCVSSQVGCALDCKFCSTAQQGFNRNLKVSEIIGQVWRAAKEIGVEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ +M L + +S +R+TVST G+V +++ + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALNLMLDDLAYGLSKRRVTVSTSGVVSGLDQMAGKI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R QIMP + +E + +++ Y +S + ++ +EYI+LD VND+
Sbjct: 218 ALAISLHAPTDELRSQIMPINDRYDIETFLASVRRYIASSNANRGRVTVEYILLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA QL +LL+ +NLIPFNP S ++ S+ ++ FQK L Y+ VRK
Sbjct: 278 MEHARQLAELLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYDYTVIVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|372489753|ref|YP_005029318.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Dechlorosoma suillum PS]
gi|359356306|gb|AEV27477.1| 23S rRNA m2A2503 methyltransferase [Dechlorosoma suillum PS]
Length = 367
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 163/302 (53%), Gaps = 33/302 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
D NG VE V + P R TLCIS+Q GC + C FC+TG GF
Sbjct: 81 FDVGNGNAVETVFI--------------PEDDRGTLCISTQAGCALDCAFCSTGKQGFNR 126
Query: 61 NLSSGEIVEQLVHASRLSN------------IRNVVFMGMGEPLNNYAALVEAVRIM-TG 107
NL+ EI+ QL A+R I NVV MGMGEPL N+ A V A+++M
Sbjct: 127 NLAVSEIIGQLWQANRALGVDPRHPDKAERIISNVVLMGMGEPLANFEAAVAALKLMLDD 186
Query: 108 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 167
+ +S +R+TVST G+V A+++ + P + LAVSLHAP +R +++P + +P+ +L
Sbjct: 187 NAYGLSRRRVTVSTSGLVPAMDRLRDECP-VALAVSLHAPNDKLRDELVPINQKYPIAEL 245
Query: 168 MNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 226
M A + Y +K + + EY+MLDGVND + HA +L + NLIPFNP S
Sbjct: 246 MAACQRYLEKAPRDFVTFEYVMLDGVNDSDAHARELLAITRDVPCKFNLIPFNPFPG-SP 304
Query: 227 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI--SAKSTPPVT 284
FR S +++ F IL + + TT RK G DI ACGQL + DK + + T P+
Sbjct: 305 FRRSKAERIRRFADILIQA-GVVTTTRKTRGDDIDAACGQLAGQVQDKTRRNERRTIPIQ 363
Query: 285 DI 286
++
Sbjct: 364 EM 365
>gi|416218218|ref|ZP_11624766.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169]
gi|416237493|ref|ZP_11631003.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1]
gi|326559876|gb|EGE10276.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169]
gi|326569638|gb|EGE19690.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1]
Length = 395
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 166/285 (58%), Gaps = 28/285 (9%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G VE V++ D GK G R TLCISSQVGC + C+FC+TG GF+ +L+
Sbjct: 104 GSLVETVLIPADD--GKQFG-------RKTLCISSQVGCALDCSFCSTGKQGFERDLTPS 154
Query: 66 EIVEQLVHAS-----------RLSNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVS 113
EI+ QL A+ R + + NVV MGMGEPL NY +V ++ +M F +S
Sbjct: 155 EIIGQLWVANQSYMENVPPTERENRVTNVVMMGMGEPLLNYDPVVASMSLMLDDHAFGLS 214
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
+R+T+ST G+V + D+ + LA+SLHAP ++R +++P + +PL+ L+ A K
Sbjct: 215 KRRVTLSTSGVVPKMYDLAKDI-DVALAISLHAPNDELRNELVPINKKYPLKDLIKAAKS 273
Query: 174 --YQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 229
Y +N + K I IEY+ML GVND ++HAHQL LL+ +NLIPFNP R
Sbjct: 274 YVYDENPRHKKHITIEYVMLAGVNDSDEHAHQLVDLLKDLPSKINLIPFNPFPHAPYGR- 332
Query: 230 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
SS++++ +F IL + T+R+ G DI ACGQLV + D+
Sbjct: 333 SSNNRIHAFSHILNQA-GFVCTIRQTRGDDIDAACGQLVGQVADR 376
>gi|237741553|ref|ZP_04572034.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13]
gi|229429201|gb|EEO39413.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13]
Length = 358
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 154/273 (56%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++ +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDKRTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++ +S
Sbjct: 138 NLSVSEILNQIYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F L+ + T+R++ G DI GACGQL
Sbjct: 317 IDKFYNYLKNIRKVNVTLRQEKGSDIDGACGQL 349
>gi|113461341|ref|YP_719410.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus
129PT]
gi|112823384|gb|ABI25473.1| 23S rRNA m(2)A-2503 methyltransferase [Haemophilus somnus 129PT]
Length = 365
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 90 PETDRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 149
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ +
Sbjct: 150 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDV 208
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ LM ++ Y S K+ IEY+MLD +ND
Sbjct: 209 ALAISLHAPNDELRNEIVPINKKYNIKMLMESVNRYLNVSNANHGKVTIEYVMLDHINDG 268
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 269 TEHAHQLAEVLKNTPCKINLIPWNPFPD-APYAKSSNTRIDRFQKTLM-EYGFTVILRKT 326
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 327 RGDDIDAACGQLAGDVIDR 345
>gi|372268286|ref|ZP_09504334.1| radical SAM enzyme, Cfr family protein [Alteromonas sp. S89]
Length = 403
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 162/260 (62%), Gaps = 18/260 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R TLC+SSQVGC + C+FCATG GF +L++ EI+ Q+ A +
Sbjct: 128 PDGDRGTLCVSSQVGCSLDCSFCATGKQGFNRDLTAAEIIGQVWIACKSFGQLQPNGPRK 187
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ +V+++ + M + +S +R+T+ST G+V A+++ +++ +
Sbjct: 188 VTNVVMMGMGEPLLNFDNVVDSMNLMMEDNAYGISKRRVTLSTSGVVPALDRL-AEVTDV 246
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN---SQQKIFIEYIMLDGVNDE 195
+LA+SLHAP ++R +++P + +P+ L+++ + Y +N + +K+ IEY M+ VND
Sbjct: 247 SLAISLHAPNDELRNELVPINKKYPIAMLLDSAQRYIENMPDNHRKMTIEYTMIREVNDR 306
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI-LRGSYNIRTTVRK 254
+HAHQL +LL V +NLIPFNP +S ++ S++ + FQ+I L Y + TVR
Sbjct: 307 PEHAHQLAELLRDVPVKINLIPFNPF-ELSDYQRVSNNALRRFQQILLDKGYTV--TVRT 363
Query: 255 QMGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 364 TRGDDIDAACGQLAGQVNDR 383
>gi|298384050|ref|ZP_06993611.1| radical SAM enzyme, Cfr family [Bacteroides sp. 1_1_14]
gi|298263654|gb|EFI06517.1| radical SAM enzyme, Cfr family [Bacteroides sp. 1_1_14]
Length = 345
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 149/240 (62%), Gaps = 4/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLCISSQVGCKM C FC TG G+ +NL++ +I+ Q+ + NVV MGM
Sbjct: 98 PDDERATLCISSQVGCKMNCKFCMTGKQGYSANLTAHQIINQIHSLPERDKLTNVVMMGM 157
Query: 89 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEPL+N +++A+ I+TG + SPKRITVSTVG+ + +F + +LA+SLH+P
Sbjct: 158 GEPLDNLEEVLKALDILTGSYGYAWSPKRITVSTVGLRKGLRRFIEE-SDCHLAISLHSP 216
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
V R ++MPA +AF + +++ LK Y + Q+++ EYI+ G+ND + +A +L KLL
Sbjct: 217 VTAQRAELMPAEKAFSITEMVELLKNYDFSKQRRLSFEYIVFKGLNDSQVYAKELLKLLR 276
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+NLI F+ I V+ + D ++ F+ L ++ + TT+R G+DI ACG L
Sbjct: 277 GLDCRINLIRFHSIPGVA-LEGADMDTMTRFRDYL-TTHGLFTTIRASRGEDIFAACGML 334
>gi|254786618|ref|YP_003074047.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
gi|237685384|gb|ACR12648.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
Length = 399
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 159/262 (60%), Gaps = 19/262 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----------- 77
P G R TLC+SSQVGC + C+FCATG GF +L+S EI+ Q+ A++
Sbjct: 113 PDGERGTLCVSSQVGCSLDCSFCATGKQGFNRDLTSDEIIGQVWIAAKSFGQLQEGGARG 172
Query: 78 -SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDL 135
+ NVV MGMGEPL N+ +VEA+ +M + +S +R+T+ST G+V +++
Sbjct: 173 DRKVTNVVLMGMGEPLLNFENVVEAMHLMMHDNCYGISKRRVTLSTSGVVPQLDRL-GKY 231
Query: 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK---NSQQKIFIEYIMLDGV 192
LA+SLHAP ++R Q++P + +P+ +L+ + K Y + ++ +KI IEY ++D V
Sbjct: 232 TDACLAISLHAPNDELRNQLVPINKKYPIAQLLASAKRYIEGLPDAHRKITIEYTLIDQV 291
Query: 193 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
ND +HAH+L +LL+ V +NLIPFNP G +S ++ S++ + FQ+IL + TV
Sbjct: 292 NDRIEHAHELVELLKDVPVKINLIPFNPFG-LSNYKKVSNNALRRFQQILIDA-GYTATV 349
Query: 253 RKQMGQDISGACGQLVVNLPDK 274
R G DI ACGQL + D+
Sbjct: 350 RTTRGDDIDAACGQLAGQVNDR 371
>gi|319760652|ref|YP_004124590.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia vafer str. BVAF]
gi|318039366|gb|ADV33916.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia vafer str. BVAF]
Length = 359
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 161/259 (62%), Gaps = 21/259 (8%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR------------ 76
P R+TLCISSQ GC +GC+FC T +GF NL + EIV Q+ +R
Sbjct: 99 PDNNRATLCISSQSGCALGCSFCGTAKLGFIKNLRTSEIVGQVWRIARFISHYNKQQVKN 158
Query: 77 ---LSNIRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFH 132
L I ++VFMGMGEPL N +V +++I + F +S +T+ST G+V I+K
Sbjct: 159 CNNLIPITHIVFMGMGEPLLNLMNVVSSIQIILNSSGFNLSKHHVTLSTSGVVPGIDKL- 217
Query: 133 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIML 189
D+ ++LAVSLHAP +R +IMP + + ++ L+ +++ Y K++ +K+ IEY++L
Sbjct: 218 KDMVDVSLAVSLHAPNDVIRNKIMPINKKYNIDCLLQSIRCYLQKTKSNNKKVTIEYVLL 277
Query: 190 DGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 249
+ +NDE +HAH+L K L T VNL+ +N I ++ +++SD ++++F K+L+ +Y I
Sbjct: 278 NRINDEIEHAHELAKKLITLPCKVNLMRWNSIKNIKYLKSTSDARLNNFYKVLK-NYGIV 336
Query: 250 TTVRKQMGQDISGACGQLV 268
TT+RK G DI +CGQL+
Sbjct: 337 TTIRKVRGADIHASCGQLM 355
>gi|422337012|ref|ZP_16417984.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
aphrophilus F0387]
gi|353345564|gb|EHB89855.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
aphrophilus F0387]
Length = 384
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 110 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 170 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDH 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 289 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|422023278|ref|ZP_16369783.1| ribosomal RNA large subunit methyltransferase N [Providencia
sneebia DSM 19967]
gi|414094046|gb|EKT55716.1| ribosomal RNA large subunit methyltransferase N [Providencia
sneebia DSM 19967]
Length = 384
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 149/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R IMP + + +E + +++ Y S ++ +EY+MLD +ND
Sbjct: 229 ALAISLHAPTDEIRDDIMPINKKYNIETFLGSVRRYLSKSNANSGRVTVEYVMLDHINDS 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 289 TEHAHQLAECLKDTPSKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 347 RGDDIDAACGQLAGEVIDR 365
>gi|387121565|ref|YP_006287448.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415764025|ref|ZP_11482286.1| hypothetical protein D17P3_1796 [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416036699|ref|ZP_11573803.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416049246|ref|ZP_11576544.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347991906|gb|EGY33348.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347996209|gb|EGY37317.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|348654376|gb|EGY70003.1| hypothetical protein D17P3_1796 [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385876057|gb|AFI87616.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 379
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 105 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGVRP 164
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 165 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 223
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD +ND
Sbjct: 224 ALAISLHAPNDELRDEIVPLNKKYNIKNLIDSVNRYLSVSNANHGKVTIEYVMLDHINDH 283
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 284 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 341
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 342 RGDDIDAACGQLAGDVIDR 360
>gi|171778734|ref|ZP_02919830.1| hypothetical protein STRINF_00682 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282691|gb|EDT48115.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
Length = 366
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 155/248 (62%), Gaps = 15/248 (6%)
Query: 35 TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMG 87
++C++SQVGC +GC+FCA+G + + +L+SGEI Q++ + + R +VV MG
Sbjct: 109 SVCVTSQVGCNIGCSFCASGLIKKQRDLTSGEITSQIMMVQKYFDERGQDERVSHVVVMG 168
Query: 88 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
+GEP +NY ++ VR + GL + + IT+ST G+ H I +F + +NLAVSL
Sbjct: 169 IGEPFDNYDNVLRFVRTINNDNGLA--IGARHITISTSGLAHKIREFAHESLQVNLAVSL 226
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
HAP ++R QIM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 227 HAPNNELRSQIMRVNRSFPLEKLFTAIEYYIETTNRRVTFEYIMLNDVNDSPENAQELAD 286
Query: 205 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
L + + + +NLIP+NP+ Q+R SS + V++F +L+ + + VR++ G DI
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYRRSSKEHVAAFYDVLKKN-GVNCVVRQEHGTDIDA 345
Query: 263 ACGQLVVN 270
ACGQL N
Sbjct: 346 ACGQLRSN 353
>gi|418294917|ref|ZP_12906794.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
gi|379066277|gb|EHY79020.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
Length = 382
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 160/259 (61%), Gaps = 17/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R TLC+SSQ GC + C+FC+TG GF SNL++ E++ Q+ A++
Sbjct: 101 PQGGRGTLCVSSQAGCALDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSIPAKIDRA 160
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A+ I M L + +S +++T+ST G+V I++ + + +
Sbjct: 161 ITNVVMMGMGEPLLNFDNVVAAMHIMMDDLGYGISKRKVTLSTSGVVPMIDEL-AKVIDV 219
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEE 196
+LA+SLHAP ++R Q++P + +PL+ L+ A K Y Q ++ + IEY +L G+ND+
Sbjct: 220 SLALSLHAPNDELRDQLVPINKKYPLDMLLAACKRYISQLGEKRVLTIEYTLLKGINDQP 279
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR-GSYNIRTTVRKQ 255
+HA Q+ LL +NLIPFNP S + S++ + FQ ILR G +N+ TVR
Sbjct: 280 EHAEQMITLLANIPCKINLIPFNPFPH-SGYERPSNNAIRRFQDILRKGGHNV--TVRTT 336
Query: 256 MGQDISGACGQLVVNLPDK 274
G+DI ACGQLV + D+
Sbjct: 337 RGEDIDAACGQLVGQVLDR 355
>gi|416213193|ref|ZP_11622177.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240013]
gi|421542612|ref|ZP_15988719.1| 23S rRNA methyltransferase [Neisseria meningitidis NM255]
gi|421554912|ref|ZP_16000851.1| 23S rRNA methyltransferase [Neisseria meningitidis 98008]
gi|254673132|emb|CBA07913.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
gi|325144551|gb|EGC66850.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240013]
gi|402317442|gb|EJU52980.1| 23S rRNA methyltransferase [Neisseria meningitidis NM255]
gi|402332065|gb|EJU67396.1| 23S rRNA methyltransferase [Neisseria meningitidis 98008]
Length = 364
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 155/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G++ +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMIPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L+ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVTDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|343494437|ref|ZP_08732699.1| ribosomal RNA large subunit methyltransferase N [Vibrio
nigripulchritudo ATCC 27043]
gi|342825342|gb|EGU59841.1| ribosomal RNA large subunit methyltransferase N [Vibrio
nigripulchritudo ATCC 27043]
Length = 372
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R
Sbjct: 99 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ +M L F +S +R+TVST G+V +++ ++ +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGNI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +IMP + +E + +++ Y +S + K+ IEY++LD VND+
Sbjct: 218 ALAISLHAPNDKLRSEIMPINDRWDIEDFLTSVRRYIASSNANRGKVTIEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA QL +LL+ +NLIPFNP S +R S+ ++ F K L ++ TVRK
Sbjct: 278 MEHARQLAELLKDTPAKINLIPFNPYPG-SPYRKPSNSRIDRFMKTLM-KHDYTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|119505391|ref|ZP_01627465.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
HTCC2080]
gi|119458846|gb|EAW39947.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
HTCC2080]
Length = 388
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 168/282 (59%), Gaps = 30/282 (10%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G VEAV++ P R+TLC+SSQVGC + C FC+TG GF+ +L++
Sbjct: 101 GALVEAVLI--------------PEAGRATLCVSSQVGCSLDCKFCSTGKQGFQRDLTAA 146
Query: 66 EIVEQLVHA---------SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPK 115
EI+ Q+ A + + NVV MGMGEPL N+ +V A+ +MT L + +S +
Sbjct: 147 EIIGQVWLAINSYSGWQSGKGRIVTNVVMMGMGEPLLNFDNVVSAMSLMTDDLAYGLSKR 206
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY- 174
++T+ST G+V A+++ ++ ++LAVSLHAP ++R +I+P R +P+++L+ + K Y
Sbjct: 207 KVTLSTSGVVPALDRL-AEFSDVSLAVSLHAPNDEIRNKIVPINRRYPIQQLLQSAKSYI 265
Query: 175 --QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 232
Q + ++ + IEY +L GVND+ +HA +L LL+ F +NLIPFN + S F S
Sbjct: 266 DAQSDRKRVVTIEYTLLAGVNDQPEHARELSTLLKDFPCKINLIPFNHFPN-SGFDRPSG 324
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
+ VS F ++L + I TVR G DI ACGQLV + D+
Sbjct: 325 NAVSRFWQVLVDAGFI-VTVRSTRGDDIDAACGQLVGEVVDR 365
>gi|357492233|ref|XP_003616405.1| Ribosomal RNA large subunit methyltransferase N [Medicago
truncatula]
gi|355517740|gb|AES99363.1| Ribosomal RNA large subunit methyltransferase N [Medicago
truncatula]
Length = 431
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 166/289 (57%), Gaps = 16/289 (5%)
Query: 7 GFVEAVIMRYDSSLGKYNGKP---RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
G V+ ++ D+ L + G P G R T C+SSQVGC + C+FCATG GF NL
Sbjct: 116 GTVKLLLKLEDNRLIETVGIPVEDEKGSVRLTACVSSQVGCPLKCSFCATGKGGFSRNLR 175
Query: 64 SGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVST 121
S EIVEQ++ + R NVVFMGMGEP+ N A++EA R + Q+ + +T+ST
Sbjct: 176 SHEIVEQVLAIEEVFKRRVTNVVFMGMGEPMLNLKAVLEAHRCLNK-DIQIGQRMMTIST 234
Query: 122 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181
VG+ + I K + LAVSLHAP Q +R I+P+A+++PL+ LM KEY + ++
Sbjct: 235 VGVPNTIKKLATHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLDALMKDCKEYFHETSRR 294
Query: 182 IFIEYIMLDGVNDEEQHAHQLGKLLETF--QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 239
+ EY +L G+ND +A +L KLL + VNLIPFNPI S+FR V +F
Sbjct: 295 VSFEYALLAGINDSVDNAVELAKLLHEYGSGYHVNLIPFNPIEG-SEFRRPYRKAVQAFV 353
Query: 240 KILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIED 288
L S I T+VR+ G D + ACGQL N + TP VT+ ++
Sbjct: 354 NALESS-KITTSVRQTRGLDANAACGQLRNNF------QKTPLVTESDN 395
>gi|421563510|ref|ZP_16009329.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2795]
gi|421907044|ref|ZP_16336932.1| Ribosomal RNA large subunit methyltransferase N 2 [Neisseria
meningitidis alpha704]
gi|393292008|emb|CCI72901.1| Ribosomal RNA large subunit methyltransferase N 2 [Neisseria
meningitidis alpha704]
gi|402341206|gb|EJU76393.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2795]
Length = 364
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 155/256 (60%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
N+V MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNIVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QH
Sbjct: 215 LAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L +L+ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G
Sbjct: 275 ARELIELVTDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVQDK 348
>gi|257880074|ref|ZP_05659727.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,230,933]
gi|257882309|ref|ZP_05661962.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,502]
gi|257885503|ref|ZP_05665156.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,501]
gi|257891165|ref|ZP_05670818.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,410]
gi|257893979|ref|ZP_05673632.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,408]
gi|260560313|ref|ZP_05832489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium C68]
gi|261208250|ref|ZP_05922923.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium TC 6]
gi|289565948|ref|ZP_06446387.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF]
gi|293563079|ref|ZP_06677545.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162]
gi|293567506|ref|ZP_06678851.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071]
gi|294615994|ref|ZP_06695821.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636]
gi|294617653|ref|ZP_06697281.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679]
gi|294623617|ref|ZP_06702455.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317]
gi|314940253|ref|ZP_07847426.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04]
gi|314941689|ref|ZP_07848568.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C]
gi|314947667|ref|ZP_07851076.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082]
gi|314950654|ref|ZP_07853734.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A]
gi|314992479|ref|ZP_07857900.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B]
gi|314996873|ref|ZP_07861878.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01]
gi|383329602|ref|YP_005355486.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Aus0004]
gi|389869456|ref|YP_006376879.1| Fe-S-cluster redox protein [Enterococcus faecium DO]
gi|406579734|ref|ZP_11054962.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD4E]
gi|406582048|ref|ZP_11057181.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD3E]
gi|406584140|ref|ZP_11059176.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD2E]
gi|406589619|ref|ZP_11064049.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD1E]
gi|410936165|ref|ZP_11368034.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD5E]
gi|415899923|ref|ZP_11551718.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4453]
gi|416139196|ref|ZP_11599133.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4452]
gi|424792617|ref|ZP_18218830.1| 23S rRNA methyltransferase [Enterococcus faecium V689]
gi|424797774|ref|ZP_18223326.1| 23S rRNA methyltransferase [Enterococcus faecium S447]
gi|424826294|ref|ZP_18251204.1| 23S rRNA methyltransferase [Enterococcus faecium R501]
gi|424857869|ref|ZP_18281953.1| 23S rRNA methyltransferase [Enterococcus faecium R499]
gi|424868563|ref|ZP_18292305.1| 23S rRNA methyltransferase [Enterococcus faecium R497]
gi|424950906|ref|ZP_18366047.1| 23S rRNA methyltransferase [Enterococcus faecium R496]
gi|424955308|ref|ZP_18370150.1| 23S rRNA methyltransferase [Enterococcus faecium R494]
gi|424958812|ref|ZP_18373437.1| 23S rRNA methyltransferase [Enterococcus faecium R446]
gi|424961262|ref|ZP_18375717.1| 23S rRNA methyltransferase [Enterococcus faecium P1986]
gi|424964863|ref|ZP_18378925.1| 23S rRNA methyltransferase [Enterococcus faecium P1190]
gi|424967212|ref|ZP_18380920.1| 23S rRNA methyltransferase [Enterococcus faecium P1140]
gi|424971640|ref|ZP_18385067.1| 23S rRNA methyltransferase [Enterococcus faecium P1139]
gi|424973752|ref|ZP_18387017.1| 23S rRNA methyltransferase [Enterococcus faecium P1137]
gi|424977232|ref|ZP_18390264.1| 23S rRNA methyltransferase [Enterococcus faecium P1123]
gi|424981352|ref|ZP_18394088.1| 23S rRNA methyltransferase [Enterococcus faecium ERV99]
gi|424984783|ref|ZP_18397301.1| 23S rRNA methyltransferase [Enterococcus faecium ERV69]
gi|424989513|ref|ZP_18401777.1| 23S rRNA methyltransferase [Enterococcus faecium ERV38]
gi|424991169|ref|ZP_18403337.1| 23S rRNA methyltransferase [Enterococcus faecium ERV26]
gi|424994655|ref|ZP_18406586.1| 23S rRNA methyltransferase [Enterococcus faecium ERV168]
gi|424999328|ref|ZP_18410955.1| 23S rRNA methyltransferase [Enterococcus faecium ERV165]
gi|425000596|ref|ZP_18412152.1| 23S rRNA methyltransferase [Enterococcus faecium ERV161]
gi|425005055|ref|ZP_18416333.1| 23S rRNA methyltransferase [Enterococcus faecium ERV102]
gi|425008633|ref|ZP_18419703.1| 23S rRNA methyltransferase [Enterococcus faecium ERV1]
gi|425011933|ref|ZP_18422790.1| 23S rRNA methyltransferase [Enterococcus faecium E422]
gi|425013474|ref|ZP_18424204.1| 23S rRNA methyltransferase [Enterococcus faecium E417]
gi|425017031|ref|ZP_18427567.1| 23S rRNA methyltransferase [Enterococcus faecium C621]
gi|425020688|ref|ZP_18430983.1| 23S rRNA methyltransferase [Enterococcus faecium C497]
gi|425023764|ref|ZP_18433865.1| 23S rRNA methyltransferase [Enterococcus faecium C1904]
gi|425035059|ref|ZP_18439911.1| 23S rRNA methyltransferase [Enterococcus faecium 514]
gi|425038929|ref|ZP_18443507.1| 23S rRNA methyltransferase [Enterococcus faecium 513]
gi|425042369|ref|ZP_18446709.1| 23S rRNA methyltransferase [Enterococcus faecium 511]
gi|425045819|ref|ZP_18449888.1| 23S rRNA methyltransferase [Enterococcus faecium 510]
gi|425049029|ref|ZP_18452905.1| 23S rRNA methyltransferase [Enterococcus faecium 509]
gi|425053288|ref|ZP_18456841.1| 23S rRNA methyltransferase [Enterococcus faecium 506]
gi|425058808|ref|ZP_18462183.1| 23S rRNA methyltransferase [Enterococcus faecium 504]
gi|425059772|ref|ZP_18463091.1| 23S rRNA methyltransferase [Enterococcus faecium 503]
gi|427395601|ref|ZP_18888523.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
durans FB129-CNAB-4]
gi|430820558|ref|ZP_19439186.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0045]
gi|430823875|ref|ZP_19442444.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0120]
gi|430826729|ref|ZP_19444903.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0164]
gi|430829314|ref|ZP_19447410.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0269]
gi|430832244|ref|ZP_19450291.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0333]
gi|430845039|ref|ZP_19462935.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1050]
gi|430847340|ref|ZP_19465179.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1133]
gi|430850546|ref|ZP_19468306.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1185]
gi|430853708|ref|ZP_19471435.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1258]
gi|430856549|ref|ZP_19474235.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1392]
gi|430863746|ref|ZP_19480191.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1573]
gi|430866956|ref|ZP_19482182.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1574]
gi|430924609|ref|ZP_19485396.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1575]
gi|430961994|ref|ZP_19487277.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1576]
gi|431012240|ref|ZP_19490031.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1578]
gi|431204832|ref|ZP_19500709.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1620]
gi|431238555|ref|ZP_19503424.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1622]
gi|431260023|ref|ZP_19505529.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1623]
gi|431309281|ref|ZP_19508662.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1626]
gi|431381565|ref|ZP_19511167.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1627]
gi|431451877|ref|ZP_19514057.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1630]
gi|431517056|ref|ZP_19516446.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1634]
gi|431549988|ref|ZP_19519301.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1731]
gi|431682644|ref|ZP_19524607.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1904]
gi|431744636|ref|ZP_19533504.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2071]
gi|431745283|ref|ZP_19534132.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2134]
gi|431749688|ref|ZP_19538425.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2297]
gi|431755622|ref|ZP_19544271.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2883]
gi|431760784|ref|ZP_19549378.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3346]
gi|431765743|ref|ZP_19554246.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4215]
gi|431768217|ref|ZP_19556657.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1321]
gi|431771402|ref|ZP_19559786.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1644]
gi|431774199|ref|ZP_19562511.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2369]
gi|431777322|ref|ZP_19565576.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2560]
gi|431779992|ref|ZP_19568181.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4389]
gi|431783071|ref|ZP_19571195.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6012]
gi|431786532|ref|ZP_19574544.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6045]
gi|447913545|ref|YP_007394957.1| Ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium NRRL B-2354]
gi|257814302|gb|EEV43060.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,230,933]
gi|257817967|gb|EEV45295.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,502]
gi|257821359|gb|EEV48489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,501]
gi|257827525|gb|EEV54151.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,410]
gi|257830358|gb|EEV56965.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,408]
gi|260073658|gb|EEW61984.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium C68]
gi|260077507|gb|EEW65225.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium TC 6]
gi|289162232|gb|EFD10093.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF]
gi|291589749|gb|EFF21552.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071]
gi|291591180|gb|EFF22862.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636]
gi|291596117|gb|EFF27382.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679]
gi|291596943|gb|EFF28156.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317]
gi|291604993|gb|EFF34461.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162]
gi|313589016|gb|EFR67861.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01]
gi|313592939|gb|EFR71784.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B]
gi|313597201|gb|EFR76046.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A]
gi|313599461|gb|EFR78304.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C]
gi|313640573|gb|EFS05153.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04]
gi|313645908|gb|EFS10488.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082]
gi|364089102|gb|EHM31819.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4453]
gi|364090753|gb|EHM33298.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4452]
gi|378939296|gb|AFC64368.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Aus0004]
gi|388534705|gb|AFK59897.1| Fe-S-cluster redox enzyme [Enterococcus faecium DO]
gi|402917477|gb|EJX38264.1| 23S rRNA methyltransferase [Enterococcus faecium V689]
gi|402920323|gb|EJX40847.1| 23S rRNA methyltransferase [Enterococcus faecium S447]
gi|402924452|gb|EJX44661.1| 23S rRNA methyltransferase [Enterococcus faecium R501]
gi|402927865|gb|EJX47789.1| 23S rRNA methyltransferase [Enterococcus faecium R499]
gi|402932138|gb|EJX51671.1| 23S rRNA methyltransferase [Enterococcus faecium R496]
gi|402934375|gb|EJX53731.1| 23S rRNA methyltransferase [Enterococcus faecium R494]
gi|402936959|gb|EJX56104.1| 23S rRNA methyltransferase [Enterococcus faecium R497]
gi|402938962|gb|EJX57924.1| 23S rRNA methyltransferase [Enterococcus faecium R446]
gi|402944252|gb|EJX62679.1| 23S rRNA methyltransferase [Enterococcus faecium P1986]
gi|402945450|gb|EJX63796.1| 23S rRNA methyltransferase [Enterococcus faecium P1190]
gi|402954876|gb|EJX72458.1| 23S rRNA methyltransferase [Enterococcus faecium P1140]
gi|402958008|gb|EJX75362.1| 23S rRNA methyltransferase [Enterococcus faecium P1137]
gi|402958591|gb|EJX75898.1| 23S rRNA methyltransferase [Enterococcus faecium P1139]
gi|402963945|gb|EJX80782.1| 23S rRNA methyltransferase [Enterococcus faecium ERV99]
gi|402966747|gb|EJX83360.1| 23S rRNA methyltransferase [Enterococcus faecium P1123]
gi|402967916|gb|EJX84429.1| 23S rRNA methyltransferase [Enterococcus faecium ERV69]
gi|402968627|gb|EJX85099.1| 23S rRNA methyltransferase [Enterococcus faecium ERV38]
gi|402977520|gb|EJX93331.1| 23S rRNA methyltransferase [Enterococcus faecium ERV26]
gi|402979267|gb|EJX94943.1| 23S rRNA methyltransferase [Enterococcus faecium ERV165]
gi|402979458|gb|EJX95124.1| 23S rRNA methyltransferase [Enterococcus faecium ERV168]
gi|402987699|gb|EJY02744.1| 23S rRNA methyltransferase [Enterococcus faecium ERV102]
gi|402988903|gb|EJY03874.1| 23S rRNA methyltransferase [Enterococcus faecium ERV161]
gi|402991921|gb|EJY06658.1| 23S rRNA methyltransferase [Enterococcus faecium ERV1]
gi|402995225|gb|EJY09702.1| 23S rRNA methyltransferase [Enterococcus faecium E422]
gi|403000887|gb|EJY14971.1| 23S rRNA methyltransferase [Enterococcus faecium E417]
gi|403005671|gb|EJY19361.1| 23S rRNA methyltransferase [Enterococcus faecium C621]
gi|403008795|gb|EJY22286.1| 23S rRNA methyltransferase [Enterococcus faecium C497]
gi|403008869|gb|EJY22355.1| 23S rRNA methyltransferase [Enterococcus faecium C1904]
gi|403018127|gb|EJY30834.1| 23S rRNA methyltransferase [Enterococcus faecium 513]
gi|403018855|gb|EJY31508.1| 23S rRNA methyltransferase [Enterococcus faecium 514]
gi|403023631|gb|EJY35869.1| 23S rRNA methyltransferase [Enterococcus faecium 511]
gi|403026258|gb|EJY38259.1| 23S rRNA methyltransferase [Enterococcus faecium 510]
gi|403029162|gb|EJY40932.1| 23S rRNA methyltransferase [Enterococcus faecium 509]
gi|403030899|gb|EJY42552.1| 23S rRNA methyltransferase [Enterococcus faecium 506]
gi|403037510|gb|EJY48780.1| 23S rRNA methyltransferase [Enterococcus faecium 504]
gi|403043242|gb|EJY54163.1| 23S rRNA methyltransferase [Enterococcus faecium 503]
gi|404455065|gb|EKA01934.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD4E]
gi|404458710|gb|EKA05118.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD3E]
gi|404464533|gb|EKA10061.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD2E]
gi|404470522|gb|EKA15147.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD1E]
gi|410735406|gb|EKQ77318.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD5E]
gi|425723590|gb|EKU86477.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
durans FB129-CNAB-4]
gi|430439433|gb|ELA49785.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0045]
gi|430441908|gb|ELA51979.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0120]
gi|430444754|gb|ELA54572.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0164]
gi|430480235|gb|ELA57423.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0333]
gi|430481220|gb|ELA58381.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0269]
gi|430495873|gb|ELA71993.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1050]
gi|430535414|gb|ELA75822.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1185]
gi|430537283|gb|ELA77627.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1133]
gi|430540261|gb|ELA80471.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1258]
gi|430544309|gb|ELA84347.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1392]
gi|430547806|gb|ELA87720.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1573]
gi|430551006|gb|ELA90776.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1574]
gi|430553808|gb|ELA93489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1575]
gi|430555904|gb|ELA95432.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1576]
gi|430559751|gb|ELA99075.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1578]
gi|430571355|gb|ELB10271.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1620]
gi|430572256|gb|ELB11118.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1622]
gi|430576762|gb|ELB15387.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1623]
gi|430579210|gb|ELB17733.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1626]
gi|430581927|gb|ELB20365.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1627]
gi|430585056|gb|ELB23359.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1630]
gi|430585610|gb|ELB23889.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1634]
gi|430590676|gb|ELB28730.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1731]
gi|430598550|gb|ELB36287.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1904]
gi|430605379|gb|ELB42784.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2071]
gi|430610719|gb|ELB47850.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2134]
gi|430611275|gb|ELB48377.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2297]
gi|430616844|gb|ELB53739.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2883]
gi|430623454|gb|ELB60146.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3346]
gi|430627682|gb|ELB64165.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4215]
gi|430629601|gb|ELB65997.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1321]
gi|430633466|gb|ELB69632.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1644]
gi|430634601|gb|ELB70719.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2369]
gi|430639434|gb|ELB75307.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2560]
gi|430641073|gb|ELB76893.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4389]
gi|430645425|gb|ELB80940.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6045]
gi|430646093|gb|ELB81588.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6012]
gi|445189254|gb|AGE30896.1| Ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium NRRL B-2354]
Length = 355
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 159/284 (55%), Gaps = 25/284 (8%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + L ++C+++QVGC +GC FCA+G + +L++
Sbjct: 87 DKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASGLLKKNRDLTA 132
Query: 65 GEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
GEIV Q++ + RN VV MG+GEP +NY +++ + I+ + +
Sbjct: 133 GEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHIINDAKGLAIGARH 192
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
ITVST G+ H I +F ++ +NLA+SLHAP +VR IM R+FP+EKLM A+ EY +
Sbjct: 193 ITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLE 252
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDK 234
+ ++I EYIML+ VND +HA QL LL+ + VNLIP+NP+ Q+ S
Sbjct: 253 KTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVSEHDQYSRSPKAD 312
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 278
V F +L+ + + +RK+ G DI ACGQL K AK
Sbjct: 313 VLRFYDVLKKN-GVNCVIRKEHGTDIDAACGQLRSKQMKKTVAK 355
>gi|429733637|ref|ZP_19267704.1| 23S rRNA methyltransferase [Aggregatibacter actinomycetemcomitans
Y4]
gi|429154765|gb|EKX97478.1| 23S rRNA methyltransferase [Aggregatibacter actinomycetemcomitans
Y4]
Length = 386
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 112 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGVRP 171
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 172 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 230
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD +ND
Sbjct: 231 ALAISLHAPNDELRDEIVPLNKKYNIKNLIDSVNRYLSVSNANHGKVTIEYVMLDHINDH 290
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 291 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 348
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 349 RGDDIDAACGQLAGDVIDR 367
>gi|167569729|ref|ZP_02362603.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis
C6786]
Length = 378
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/264 (43%), Positives = 152/264 (57%), Gaps = 21/264 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS---RLS------- 78
P R TLC+SSQ GC + C FC+TG GF NLS+GEIV QL A R S
Sbjct: 100 PEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGREPGP 159
Query: 79 ------NIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKF 131
I NVV MGMGEPL NY+A+V A+R+M + +S +R+T+ST G+V ++K
Sbjct: 160 NGRADRVITNVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDKL 219
Query: 132 HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLD 190
++LP + LAVSLHAP +R +++P R PL +LM A + Y K + + I EY MLD
Sbjct: 220 GAELP-VALAVSLHAPNDALRDELVPLNRKHPLRELMAACQRYLKVAPRDFITFEYCMLD 278
Query: 191 GVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 250
GVND E HA +L L NLIPFNP R S D++ F ++L + + T
Sbjct: 279 GVNDTEAHARELLALTRDVPCKFNLIPFNPFPESGLVR-SKPDQIKRFAQVLIDA-GVVT 336
Query: 251 TVRKQMGQDISGACGQLVVNLPDK 274
T+RK G DI ACGQL + D+
Sbjct: 337 TIRKTRGDDIDAACGQLAGAVKDR 360
>gi|297544781|ref|YP_003677083.1| Cfr family radical SAM protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842556|gb|ADH61072.1| radical SAM enzyme, Cfr family [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 342
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 156/237 (65%), Gaps = 6/237 (2%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-SRLSNIRNVVFMGMGEPL 92
+T C+S+QVGC M C+FCA+ G +L + E+V+Q++ S I N+V MG GEP
Sbjct: 101 NTACVSTQVGCNMRCSFCASAIGGKVRDLKASEMVDQVMSIDSDYGKISNIVLMGSGEPF 160
Query: 93 NNYAALVEAVRIMTGLPFQ--VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 150
+NY +++ ++I+ P+ + + IT+ST GI+ I +F + +NL++SLHAP +
Sbjct: 161 DNYEEVMKFIKIVNN-PYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHAPNDE 219
Query: 151 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 210
+R Q+MP +A+PLE+LM A K Y + ++++I EY +++GVND+++HA+QL LL+
Sbjct: 220 LRTQLMPINKAYPLEELMKACKYYIEKTRRRITFEYSLIEGVNDKKEHAYQLVDLLQGML 279
Query: 211 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLIP N + + F+ ++++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 280 CHVNLIPINYVKEIG-FKKAANEKVMMFKKIIENA-GISCTVRRELGSDIEAACGQL 334
>gi|381151853|ref|ZP_09863722.1| 23S rRNA m2A2503 methyltransferase [Methylomicrobium album BG8]
gi|380883825|gb|EIC29702.1| 23S rRNA m2A2503 methyltransferase [Methylomicrobium album BG8]
Length = 370
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/252 (42%), Positives = 163/252 (64%), Gaps = 9/252 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-SRLSN---IRNVV 84
P R TLC+SSQ+GC + C+FC+T GF NL++ EI+ Q++ A RL + I NVV
Sbjct: 106 PEESRGTLCVSSQIGCALACSFCSTAQQGFNRNLATSEIIGQVLAAQKRLGSERKITNVV 165
Query: 85 FMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N+ +V A+ + M F +S +R+T+ST G+V A+ + +++ ++LAVS
Sbjct: 166 MMGMGEPLLNFDNVVAAMNLMMDDFAFGLSKRRVTLSTSGVVPAMYRL-TEVCDVSLAVS 224
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQL 202
LHA ++R Q++P + +PL +LM A ++ K + ++ I EY+MLDG+ND + A L
Sbjct: 225 LHAVRDELRDQLVPINKKYPLSELMEACRDNAKLAPRRTITFEYVMLDGINDSPEDAKGL 284
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
+LL T +NLIPFNP + S +R SS+++++ F+ +L + I TTVRK G DI
Sbjct: 285 IELLSTVPSKLNLIPFNPFPN-SPYRCSSNNRINLFKTMLNEA-GIVTTVRKTRGDDIDA 342
Query: 263 ACGQLVVNLPDK 274
ACGQLV + D+
Sbjct: 343 ACGQLVGKVKDR 354
>gi|157371847|ref|YP_001479836.1| ribosomal RNA large subunit methyltransferase N [Serratia
proteamaculans 568]
gi|205829876|sp|A8GHW8.1|RLMN_SERP5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157323611|gb|ABV42708.1| radical SAM enzyme, Cfr family [Serratia proteamaculans 568]
Length = 398
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 149/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGERP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R I+P R + +E + A++ Y S Q ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPNDKIRDDIVPINRKYNIETFLAAVRRYLAKSNANQGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AHQL ++L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TDDAHQLAEVLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|416066265|ref|ZP_11581932.1| hypothetical protein D18P1_0025 [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348002861|gb|EGY43524.1| hypothetical protein D18P1_0025 [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
Length = 379
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 105 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGVRP 164
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 165 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 223
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD +ND
Sbjct: 224 ALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDH 283
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 284 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 341
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 342 RGDDIDAACGQLAGDVIDR 360
>gi|406936421|gb|EKD70145.1| hypothetical protein ACD_46C00621G0003, partial [uncultured
bacterium]
Length = 342
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/257 (40%), Positives = 158/257 (61%), Gaps = 14/257 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR------- 81
P R TLCISSQVGC + C+FC+TG GF NL++ E++ QL A R +++
Sbjct: 69 PEKTRGTLCISSQVGCILNCDFCSTGKQGFNRNLTTAEMISQLWIAVRKLSLQQGIHDHA 128
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N+ ++ A+ +M + +S +R+TVST G+V + + ++ +
Sbjct: 129 VTNVVMMGMGEPLLNFDNVLPALNLMLDDFAYGLSKRRVTVSTAGVVPIMYQLR-EMSEV 187
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R +I+P + +PL++LM +EY K+ ++ I +EY+ML VND
Sbjct: 188 ALAVSLHAPNDELRNKIVPLNKKYPLKELMAVCREYFKDDNRRSITMEYVMLANVNDSPI 247
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL KLL+ + VNLIPFNP + ++ S + + F+ IL + + TT+R+ G
Sbjct: 248 HAKQLIKLLDGVRAKVNLIPFNPFPH-TDYQRSDTETIMRFRDILMQA-GLNTTIRRTRG 305
Query: 258 QDISGACGQLVVNLPDK 274
DI ACGQLV + D+
Sbjct: 306 DDIDAACGQLVGQVKDR 322
>gi|384082129|ref|ZP_09993304.1| radical SAM protein [gamma proteobacterium HIMB30]
Length = 376
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 159/259 (61%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL----------VHASRLS 78
P G R TLC+SSQVGC + C+FC+TG GF NL++ EI+ Q+ V S+
Sbjct: 102 PEGDRGTLCVSSQVGCSLDCSFCSTGKQGFNKNLTAAEIIGQVFLAAKSFGLPVKDSQKR 161
Query: 79 NIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPG 137
++ NVV MGMGEPL N+ +V+A+ +M + +S +R+T+ST G+V +N+ + +
Sbjct: 162 SVTNVVMMGMGEPLLNFEPVVDAMSLMLEDQAYGLSKRRVTLSTSGVVPHLNEL-ARVSD 220
Query: 138 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK--NSQQKIFIEYIMLDGVNDE 195
+ LAVSLHAP ++R +++P R +P+ L ++++ Y + + + EY ML GVND
Sbjct: 221 VALAVSLHAPNDELRNELVPINRKYPIAVLFDSIRNYLDGLSDNRSVTFEYTMLKGVNDS 280
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
++ A +L L +T + +NLIPFNP +++ SS +++ +FQ+IL ++ TVRK
Sbjct: 281 DELARELSTLAKTIRCKINLIPFNPFPG-TRYEVSSRNRIYAFQRILLNDGHV-VTVRKT 338
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + DK
Sbjct: 339 RGDDIDAACGQLAGQVADK 357
>gi|430835133|ref|ZP_19453129.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0679]
gi|430836828|ref|ZP_19454805.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0680]
gi|430839860|ref|ZP_19457797.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0688]
gi|430859356|ref|ZP_19476968.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1552]
gi|430484562|gb|ELA61536.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0679]
gi|430488151|gb|ELA64844.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0680]
gi|430490309|gb|ELA66841.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0688]
gi|430543717|gb|ELA83772.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1552]
Length = 355
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 156/273 (57%), Gaps = 25/273 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + L ++C+++QVGC +GC FCA+G + +L++
Sbjct: 87 DKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASGLLKKNRDLTA 132
Query: 65 GEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
GEIV Q++ + RN VV MG+GEP +NY +++ + I+ + +
Sbjct: 133 GEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHIINDAKGLAIGARH 192
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
ITVST G+ H I +F ++ +NLA+SLHAP +VR IM R+FP+EKLM A+ EY +
Sbjct: 193 ITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLE 252
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDK 234
+ ++I EYIML+ VND +HA QL LL+ + VNLIP+NP+ Q+ S
Sbjct: 253 KTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVSEHDQYSRSPKAD 312
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V F +L+ + + +RK+ G DI ACGQL
Sbjct: 313 VLRFYDVLKKN-GVNCVIRKEHGTDIDAACGQL 344
>gi|444334181|ref|ZP_21149798.1| radical SAM enzyme, Cfr family [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|443550745|gb|ELT58898.1| radical SAM enzyme, Cfr family [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 362
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 37 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGVRP 96
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 97 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 155
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD +ND
Sbjct: 156 ALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDH 215
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 216 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 273
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 274 RGDDIDAACGQLAGDVIDR 292
>gi|427729035|ref|YP_007075272.1| 2-vinyl bacteriochlorophyllide hydratase [Nostoc sp. PCC 7524]
gi|427364954|gb|AFY47675.1| 23S rRNA m2A2503 methyltransferase [Nostoc sp. PCC 7524]
Length = 358
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 148/244 (60%), Gaps = 5/244 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFM 86
P R T+C+S+QVGC M C+FCATG G+K NL EIV+Q+ V + +VVFM
Sbjct: 113 PTEKRLTVCVSTQVGCPMACDFCATGKGGYKRNLDRHEIVDQVLTVQEDFQQRVSHVVFM 172
Query: 87 GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
GMGEPL N ++ A++ + + + +TVSTVGI I + + + LAVSLHA
Sbjct: 173 GMGEPLLNTENVLAAIKSLNQ-DVGIGQRSLTVSTVGIRDRIRELAQEHLQVTLAVSLHA 231
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
P Q +R QI+P+AR +P+E L+ +EY + ++I EYI+L GVND +HA +L K L
Sbjct: 232 PNQALREQIIPSARPYPIEDLLTECREYVAITGRRISFEYILLAGVNDLPEHALELAKRL 291
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
FQ VNLIP+NPI V ++ + D++ +F K+L+ I +VR G + ACGQ
Sbjct: 292 RGFQSHVNLIPYNPIEEVD-YKRPNRDRIQAFLKVLQ-QQQIAVSVRYSRGLEADAACGQ 349
Query: 267 LVVN 270
L N
Sbjct: 350 LRTN 353
>gi|261405801|ref|YP_003242042.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp.
Y412MC10]
gi|329926635|ref|ZP_08281048.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
gi|261282264|gb|ACX64235.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
gi|328939176|gb|EGG35539.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
Length = 346
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 154/265 (58%), Gaps = 22/265 (8%)
Query: 9 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 68
+E VIMR++ +++C+++QVGC++GC FCA+ G K NL+SGEIV
Sbjct: 90 IETVIMRHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLTSGEIV 135
Query: 69 EQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTV 122
Q+V A ++ + ++V MG GEP NY A ++ +R M + + ITVST
Sbjct: 136 AQVVQAQKILDKTGERVSSIVIMGSGEPFENYEATMKFLRTMIHEKGLNIGQRHITVSTS 195
Query: 123 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 182
GIV I KF + +NLA+S+HAP +R ++MP R FP + ++ +L+ YQ + ++I
Sbjct: 196 GIVPNIYKFTEEDTQINLAISIHAPNDKLRSKLMPVNRRFPFDDVIESLRYYQAKTGRRI 255
Query: 183 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 242
EY ++ GVND+ +HA +L +++ VNLIP N + RTS +D + FQ+ L
Sbjct: 256 TFEYALIGGVNDQVEHAEELADVIKDMNCFVNLIPVNHVPERKYVRTSRND-IFKFQRAL 314
Query: 243 RGSYNIRTTVRKQMGQDISGACGQL 267
+ T+R++ G DI+ ACGQL
Sbjct: 315 -ADKGVNVTIRREQGHDIAAACGQL 338
>gi|354580914|ref|ZP_08999818.1| radical SAM enzyme, Cfr family [Paenibacillus lactis 154]
gi|353201242|gb|EHB66695.1| radical SAM enzyme, Cfr family [Paenibacillus lactis 154]
Length = 347
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 158/269 (58%), Gaps = 25/269 (9%)
Query: 8 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 67
++E+V + Y + Y CISSQ GC GC FCATGT+G K NL++ EI
Sbjct: 87 YIESVRLSYKTGWESY-------------CISSQCGCGFGCTFCATGTLGLKRNLTTDEI 133
Query: 68 VEQLVHAS-RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP--FQVSPKRITVSTVGI 124
+QL++ + + +V FMGMGE L N + +A+ ++T +P F + +RITVST+G+
Sbjct: 134 TDQLLYFTLNKYPLDSVSFMGMGEALAN-PYVFDALHVLT-VPKLFGLGHRRITVSTIGL 191
Query: 125 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 184
+ I K + P +NL SLH+P D R ++MP FPLE+++ L E+ + +++K++I
Sbjct: 192 IPGIKKLTKEFPQINLTFSLHSPFNDQRSELMPINNHFPLEEVLTVLDEHIQQTKRKVYI 251
Query: 185 EYIMLDGVNDEEQHAHQLGKLLET-----FQVVVNLIPFNPIGSVSQ-FRTSSDDKVSSF 238
YI+L G+ND +HA + LL + VNLIP+N + SQ F S + ++ F
Sbjct: 252 AYILLRGINDSTKHAEAVADLLRSRGSWEHLYHVNLIPYNSTDATSQSFAESDQNSINMF 311
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQL 267
K+L+ S I TVR Q G DI+ ACGQL
Sbjct: 312 LKVLK-SKGIHVTVRTQFGSDINAACGQL 339
>gi|261407206|ref|YP_003243447.1| chloramphenicol/florfenicol resistance protein [Paenibacillus sp.
Y412MC10]
gi|261283669|gb|ACX65640.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
Length = 346
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/269 (39%), Positives = 162/269 (60%), Gaps = 25/269 (9%)
Query: 8 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 67
++E+V + Y + Y CISSQ GC GC FCATGT+G K NL++ EI
Sbjct: 87 YIESVRLSYQTGWESY-------------CISSQCGCGFGCTFCATGTLGLKRNLTTDEI 133
Query: 68 VEQLVHASRLSN--IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGI 124
+QL++ + L+N + +V FMGMGE L N + +A+ ++T F + +RITVST+G+
Sbjct: 134 TDQLLYFT-LNNHPLDSVSFMGMGEALAN-PYVFDALHLLTDPKLFGLGHRRITVSTIGL 191
Query: 125 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 184
+ + K + P +NL SLH+P D R ++MP FPLE++M L E+ + +++K++I
Sbjct: 192 LPGVKKLTKEFPQINLTFSLHSPFHDQRSELMPINNHFPLEEVMTVLDEHIQQTKRKVYI 251
Query: 185 EYIMLDGVNDEEQHAHQLGKLLE---TFQVV--VNLIPFNPIGSVSQ-FRTSSDDKVSSF 238
YI+L G+ND +HA + LL +++ + VNLIP+N + SQ F S + ++ F
Sbjct: 252 AYILLRGINDSTKHAKAVADLLRERGSWEHLYHVNLIPYNSTDATSQSFVESDQNSINMF 311
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQL 267
+IL+ S I TVR Q G DI+ ACGQL
Sbjct: 312 LRILK-SKGIHVTVRTQFGSDINAACGQL 339
>gi|288904758|ref|YP_003429979.1| hypothetical protein GALLO_0545 [Streptococcus gallolyticus UCN34]
gi|306830757|ref|ZP_07463921.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325977679|ref|YP_004287395.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|386337194|ref|YP_006033363.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|288731483|emb|CBI13037.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|304427104|gb|EFM30212.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325177607|emb|CBZ47651.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|334279830|dbj|BAK27404.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 368
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 168/293 (57%), Gaps = 29/293 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+MR L ++C++SQVGC MGC+FCA+G + + +L+S
Sbjct: 93 DGMLIETVLMRQHYGL--------------SVCVTSQVGCNMGCSFCASGLIKKQRDLTS 138
Query: 65 GEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEI Q++ + + R +VV MG+GEP +NY ++ +R + GL +
Sbjct: 139 GEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYNNVLRFLRTINDDNGLA--IGA 196
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+ H I F + +NLAVSLHAP ++R QIM R+FPLEKL A++ Y
Sbjct: 197 RHITVSTSGLAHKIRDFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEKLFAAIEYY 256
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + +++ EYIML+ VND ++A +L L + + + +NLIP+NP+ Q+ SS
Sbjct: 257 VETTNRRVTFEYIMLNEVNDFPENAQELADLTKKIRKLSYINLIPYNPVSEHDQYSRSSK 316
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTD 285
++V++F +L+ + + VR++ G DI ACGQL N + K+ T+
Sbjct: 317 ERVAAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAEKTN 368
>gi|393757562|ref|ZP_10346386.1| radical SAM superfamily protein 2 [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393165254|gb|EJC65303.1| radical SAM superfamily protein 2 [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 382
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/275 (40%), Positives = 160/275 (58%), Gaps = 25/275 (9%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR--LSN------- 79
P R TLCISSQ GC + C FC+TG GF NL++ EI+ QL +A R LS
Sbjct: 100 PEDDRGTLCISSQAGCTVACPFCSTGYQGFNRNLTTAEIIGQLWYARRALLSAPETARIG 159
Query: 80 ---------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAIN 129
I NVV MGMGEPL NY ++ A+R+M + +S +R+TVST G+V ++
Sbjct: 160 DAAQTSTRVISNVVMMGMGEPLLNYDQVLGALRLMLDDNAYGLSRRRVTVSTSGVVPMMD 219
Query: 130 KFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIM 188
+ D P + LAVSLHAP +R +++P + +PL +L++A Y +++ + I EYIM
Sbjct: 220 RLAQDCP-VALAVSLHAPNDALRDRLVPLNKKYPLAELLDACNRYLEHAPRDFITFEYIM 278
Query: 189 LDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYN 247
LDG+ND +QHA +L + + NLIPFNP S + SS +V F Q+++ G
Sbjct: 279 LDGINDTDQHAQELLDIARIVRCKFNLIPFNPFPQ-SGLKRSSAARVKQFAQRLMDGG-- 335
Query: 248 IRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPP 282
+ TTVRK G DI+ ACGQL ++ D+ + P
Sbjct: 336 VVTTVRKTRGDDIAAACGQLAGDIRDRTRIEQRLP 370
>gi|320539274|ref|ZP_08038944.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen
[Serratia symbiotica str. Tucson]
gi|320030666|gb|EFW12675.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen
[Serratia symbiotica str. Tucson]
Length = 399
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 125 PDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKIAGERP 184
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 185 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 243
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P R + +E + A++ Y S Q ++ +EY+MLD +ND
Sbjct: 244 ALAISLHAPNDKIRNEIVPINRNYNIESFLAAVRRYLAKSNANQGRVTVEYVMLDHINDS 303
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AHQL +L+ +NLIP+NP + R SS+ +V F K+L Y T VR+
Sbjct: 304 TDDAHQLANVLKNTPCKINLIPWNPFPAAPYGR-SSNSRVDRFAKVLM-EYGFTTIVRRT 361
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 362 RGDDIDAACGQLAGEVIDR 380
>gi|126663212|ref|ZP_01734210.1| hypothetical protein FBBAL38_07660 [Flavobacteria bacterium BAL38]
gi|126624870|gb|EAZ95560.1| hypothetical protein FBBAL38_07660 [Flavobacteria bacterium BAL38]
Length = 346
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/246 (41%), Positives = 148/246 (60%), Gaps = 9/246 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV---HASRLSNIR---N 82
P R+T C+SSQVGC + CNFCAT + NL GEI +Q+ + SRL R N
Sbjct: 99 PTETRTTACVSSQVGCSLDCNFCATARLKRMRNLEPGEIYDQVAAIDNESRLYYDRPLSN 158
Query: 83 VVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
+VFMGMGEPL NY +++A+ ++T +SPKRITVST G+ I K D LA
Sbjct: 159 IVFMGMGEPLMNYPNVMKAIDMITSSEGLGMSPKRITVSTSGVSKMIKKMADDEVKFKLA 218
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
VSLH+ ++++R +IMP ++FPL +L AL+ + + ++ K+ EY++ G+ND+++
Sbjct: 219 VSLHSAIEEIRNEIMPFTKSFPLTELREALEYWYRKTKSKVTYEYVVWKGINDDKKSIDA 278
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L K + VNLI +NPI F+ +S+D +++ L S NI VR+ G+DI
Sbjct: 279 LVKFCKYVPCKVNLIEYNPIDD-GMFQQASEDATNAYITALAKS-NIVAKVRRSRGKDID 336
Query: 262 GACGQL 267
ACGQL
Sbjct: 337 AACGQL 342
>gi|387888362|ref|YP_006318660.1| radical SAM protein [Escherichia blattae DSM 4481]
gi|414593916|ref|ZP_11443557.1| ribosomal RNA large subunit methyltransferase N [Escherichia
blattae NBRC 105725]
gi|386923195|gb|AFJ46149.1| radical SAM enzyme [Escherichia blattae DSM 4481]
gi|403195173|dbj|GAB81209.1| ribosomal RNA large subunit methyltransferase N [Escherichia
blattae NBRC 105725]
Length = 388
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P R + +E + A++ Y + S Q ++ IEY+MLD +ND
Sbjct: 233 ALAISLHAPNDTIRDEIVPINRKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHINDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ ++ F K L Y T VRK
Sbjct: 293 VEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKTLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 351 RGDDIDAACGQLAGEVIDR 369
>gi|145589473|ref|YP_001156070.1| radical SAM protein [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|205829801|sp|A4SYE2.1|RLMN_POLSQ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145047879|gb|ABP34506.1| 23S rRNA m(2)A-2503 methyltransferase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 402
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/276 (40%), Positives = 154/276 (55%), Gaps = 28/276 (10%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLCISSQ GC + C FC+TG GF NL+SGEI+ QL A L
Sbjct: 99 PEDDRGTLCISSQAGCAVNCRFCSTGRQGFSRNLTSGEIIGQLWFAEHLLRNDPEAIRRI 158
Query: 80 --------------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGI 124
I NVV MGMGEPL NY +V A+R+M + +S +R+TVST G+
Sbjct: 159 EKYPTPGWEHTGRVISNVVMMGMGEPLLNYDNVVSALRLMLDDRAYGLSRRRVTVSTSGV 218
Query: 125 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF- 183
V I++ D P + LAVSLHAP +R Q++P + +PL +L++A + Y + +
Sbjct: 219 VPMIDRLAQDCP-VALAVSLHAPNDALRDQLVPLNQKYPLRELLDACERYLPFAPRDFLT 277
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
EY MLDGVND + A +L +LL + +NLIPFNP S + SS +V++F IL
Sbjct: 278 FEYCMLDGVNDSDIQAKELVRLLRNIKCKINLIPFNPFPE-SGLKRSSAQRVNAFAGILL 336
Query: 244 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 279
+ + TVRK G DI+ ACGQL ++ D+ +
Sbjct: 337 DAGMV-ATVRKTRGDDIAAACGQLAGDVVDRTRVRE 371
>gi|119775502|ref|YP_928242.1| ribosomal RNA large subunit methyltransferase N [Shewanella
amazonensis SB2B]
gi|205829877|sp|A1S866.1|RLMN_SHEAM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|119768002|gb|ABM00573.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 373
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EIV Q+ S
Sbjct: 99 PEDDRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFQKETGERP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 159 ISNVVMMGMGEPLLNLANVVPAMNIMLDDYGFGLSKRRVTLSTSGVVPALDKL-GDVIDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LAVS+HAP ++R ++P + +PL++ + A++ Y + S + ++ +EY+MLD +ND
Sbjct: 218 ALAVSIHAPNDELRDVLVPINKKYPLQEFLAAIRRYLEKSNANRGRVTLEYVMLDHINDS 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AH+L KL++ +NLIPFNP S + SS+ ++ F K+L Y++ VRK
Sbjct: 278 TDQAHELAKLMKDTPCKINLIPFNPYPG-SPYGRSSNSRIDRFAKVLM-EYDLTVIVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 336 RGDDIDAACGQLAGDIRDR 354
>gi|298490256|ref|YP_003720433.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708]
gi|298232174|gb|ADI63310.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708]
Length = 356
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 150/241 (62%), Gaps = 5/241 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFM 86
P R T+C+S+QVGC M C+FCATG G+K NLS GEIV+Q+ V + NVVFM
Sbjct: 114 PSHKRLTVCVSTQVGCPMACDFCATGKGGYKRNLSRGEIVDQVLTVQEDFQQRVSNVVFM 173
Query: 87 GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
G+GEPL N ++ A++ + + + +T+STVGI I++ + LAVSLHA
Sbjct: 174 GLGEPLLNTENVILALKALNE-DVGIGQRSLTISTVGIRDRIHQLAQHHLQITLAVSLHA 232
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
P Q +R Q++P+A+ +P+E L+N +EY + + +++ EYI+L GVND + A +L K L
Sbjct: 233 PNQALREQLIPSAKPYPIEDLLNECREYVEITGRRVTFEYILLAGVNDLPEQALELSKRL 292
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
FQ VNLIP+NPI V ++ + D++ +F +L+ NI +VR G + ACGQ
Sbjct: 293 RGFQSHVNLIPYNPIEEVD-YKRPNRDRIQAFVNVLQ-QQNITVSVRYSRGLEADAACGQ 350
Query: 267 L 267
L
Sbjct: 351 L 351
>gi|416058312|ref|ZP_11580467.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|347999836|gb|EGY40649.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
Length = 364
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 90 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGVRP 149
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 150 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 208
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD +ND
Sbjct: 209 ALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDH 268
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 269 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 326
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 327 RGDDIDAACGQLAGDVIDR 345
>gi|90579368|ref|ZP_01235178.1| hypothetical protein VAS14_06663 [Photobacterium angustum S14]
gi|90440201|gb|EAS65382.1| hypothetical protein VAS14_06663 [Photobacterium angustum S14]
Length = 373
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A++
Sbjct: 99 PDEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKEIGVQKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I N+V MGMGEPL N L+ A+ IM L F +S +R+TVST G+V + + ++ +
Sbjct: 159 ITNIVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R QIMP + +E ++ ++ Y ++ + ++ +EY++LD VND+
Sbjct: 218 ALAISLHAPTDELRSQIMPINDRWNIEAFLDVVRRYVNSTNANRGRVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA QL K+L+ +NLIPFNP S ++ S+ ++ F K L Y+ TVRK
Sbjct: 278 MEHARQLAKVLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFMKTLM-EYDFTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|227833380|ref|YP_002835087.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
aurimucosum ATCC 700975]
gi|262184366|ref|ZP_06043787.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
aurimucosum ATCC 700975]
gi|227454396|gb|ACP33149.1| hypothetical protein cauri_1556 [Corynebacterium aurimucosum ATCC
700975]
Length = 368
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/279 (39%), Positives = 159/279 (56%), Gaps = 29/279 (10%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+G +E+V+MRY PG R+TLCISSQ GC M C FCATG G NLS
Sbjct: 102 HDGTLLESVLMRY------------PG--RATLCISSQAGCGMACPFCATGQGGLDRNLS 147
Query: 64 SGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTG---LPFQVSPK 115
+ EIVEQ HA+RL + NVVFMGMGEPL NY +V AVR +TG F +S +
Sbjct: 148 TAEIVEQFRHAARLMEEEGGRLSNVVFMGMGEPLANYKRVVHAVRQITGSELTGFGLSQR 207
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
+TVSTVG+ AI K + LAVSLH P ++R ++P +P+E++++A K Y
Sbjct: 208 NVTVSTVGLAPAIRKLADEDLSCTLAVSLHTPDDELRDTLVPVNNRWPVEEVLDAAKYYA 267
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSD 232
S +++ IEY ++ ND++ A LG+ L +V VN+IP NP S++ +
Sbjct: 268 DKSGRRVSIEYALIRDKNDQDFRADMLGRKLHAALGSKVHVNVIPLNPTPG-SEWDAAPK 326
Query: 233 DKVSSF-QKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
+ F ++++ + + TVR G +I+ ACGQL +
Sbjct: 327 ARQDEFVRRVI--AQGVPCTVRDTKGDEIAAACGQLAAD 363
>gi|394987688|ref|ZP_10380527.1| hypothetical protein SCD_00088 [Sulfuricella denitrificans skB26]
gi|393792907|dbj|GAB70166.1| hypothetical protein SCD_00088 [Sulfuricella denitrificans skB26]
Length = 359
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 150/256 (58%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P G R TLC+SSQVGC + C+FC+TG GF NLS EI+ QL A++ I
Sbjct: 96 PEGDRGTLCVSSQVGCALECSFCSTGKQGFNRNLSVAEIIGQLWWANKALGCTPRNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL N+ +V A+R+M + +S +R+TVST GIV A+++ P +
Sbjct: 156 SNVVLMGMGEPLLNFDNMVTALRLMLDDNAYGLSRRRVTVSTSGIVPAMDRLREQCP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQH 198
LAVSLHAP +R ++P + +PL +LM A + Y ++ + I EY+ML+GVND H
Sbjct: 215 LAVSLHAPNDALRDILVPINKKYPLSELMAACRRYVVDAPRDFITFEYVMLEGVNDSPAH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L L NLIPFNP S+++ SS D + F IL + + TT RK G
Sbjct: 275 ARELVALTRDVPCKFNLIPFNPFPD-SEYKRSSADVIRRFGAILIEAGRVVTT-RKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGKVQDK 348
>gi|284006771|emb|CBA72033.1| radical SAM superfamily protein [Arsenophonus nasoniae]
Length = 389
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 115 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKVIGSLKSSGRRP 174
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 175 ITNVVMMGMGEPLLNLNNVIPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 233
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + +++ Y S Q ++ +EY+ML+GVND
Sbjct: 234 ALAISLHAPTDEIRDEIVPINKKYNIETFLASVRRYLTKSNANQGRVTVEYVMLNGVNDS 293
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP + + SS+ ++ F K+L Y T VRK
Sbjct: 294 IEHAHQLAECLKHTPSKINLIPWNPFPG-APYSRSSNSRIDRFAKVLM-KYGFTTIVRKT 351
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 352 RGDDIDAACGQLAGDVIDR 370
>gi|37525329|ref|NP_928673.1| hypothetical protein plu1373 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|81419944|sp|Q7N709.1|RLMN_PHOLL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|36784756|emb|CAE13666.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 392
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 118 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRP 177
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 178 ITNVVMMGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 236
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP DVR I+P R + +E+ + ++ Y S Q ++ +EY+MLD +ND
Sbjct: 237 ALAISLHAPTDDVRDDIVPINRKYNIEQFLAGVRRYLTKSNANQGRVTVEYVMLDHINDS 296
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 297 VEQAHQLAECLKETPSKINLIPWNPFPGAPYGR-SSNSRIDRFAKVLM-EYGFTTIVRKT 354
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 355 RGDDIDAACGQLAGDVIDR 373
>gi|374337519|ref|YP_005094223.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
macedonicus ACA-DC 198]
gi|372283623|emb|CCF01815.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
macedonicus ACA-DC 198]
Length = 368
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 168/293 (57%), Gaps = 29/293 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+MR L ++C++SQVGC MGC+FCA+G + + +L+S
Sbjct: 93 DGMLIETVLMRQHYGL--------------SVCVTSQVGCDMGCSFCASGLIKKQRDLTS 138
Query: 65 GEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEI Q++ + + R +VV MG+GEP +NY ++ +R + GL +
Sbjct: 139 GEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYNNVLRFLRTINDDNGLA--IGA 196
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+ H I F + +NLAVSLHAP ++R QIM R+FPLEKL A++ Y
Sbjct: 197 RHITVSTSGLAHKIRDFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEKLFAAIEYY 256
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + +++ EYIML+ VND ++A +L L + + + +NLIP+NP+ Q+ SS
Sbjct: 257 VETTNRRVTFEYIMLNEVNDFPENAQELADLTKKIRKLSYINLIPYNPVSEHDQYSRSSK 316
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTD 285
++V++F +L+ + + VR++ G DI ACGQL N + K+ T+
Sbjct: 317 ERVAAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAEKTN 368
>gi|365540822|ref|ZP_09365997.1| ribosomal RNA large subunit methyltransferase N [Vibrio ordalii
ATCC 33509]
Length = 373
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R
Sbjct: 99 PEEERATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +IMP + ++ + +++ Y S + K+ +EY++LD VND+
Sbjct: 218 ALAISLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIATSNANRGKVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L KL++ +NLIPFNP S ++ S+ ++ FQK L Y TVRK
Sbjct: 278 MEHAHELAKLMKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|146293751|ref|YP_001184175.1| ribosomal RNA large subunit methyltransferase N [Shewanella
putrefaciens CN-32]
gi|205829884|sp|A4Y8U3.1|RLMN_SHEPC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145565441|gb|ABP76376.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens CN-32]
Length = 373
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EIV Q+ S
Sbjct: 99 PEDDRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGDRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D +
Sbjct: 159 ITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LAVS+HAP ++R ++P + +PL++ + ++ Y S + ++ +EY+MLD +ND
Sbjct: 218 ALAVSIHAPNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDS 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AH+L KL+E VNLIPFNP S + SS+ ++ F K+L Y + VRK
Sbjct: 278 TEQAHELAKLMEDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 336 RGDDIDAACGQLAGDIRDR 354
>gi|430806169|ref|ZP_19433284.1| Radical SAM enzyme, Cfr family protein [Cupriavidus sp. HMR-1]
gi|429501549|gb|EKZ99880.1| Radical SAM enzyme, Cfr family protein [Cupriavidus sp. HMR-1]
Length = 384
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/280 (42%), Positives = 161/280 (57%), Gaps = 26/280 (9%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-----SRLSN---- 79
P R TLC+SSQ GC + C FC+TG GF NLS+GEI+ QL A ++L
Sbjct: 98 PEDTRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMRAQLGRGPKD 157
Query: 80 ---IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDL 135
I NVV MGMGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ DL
Sbjct: 158 ERVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDL 217
Query: 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVND 194
P + LAVSLHA +R ++P R +PL +LM A + Y + + + I EY MLDGVND
Sbjct: 218 P-VALAVSLHASNDALRDVLVPLNRKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVND 276
Query: 195 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 254
+HA +L KL+ NLIPFNP S + S+++++ F +IL + I TT+RK
Sbjct: 277 GVEHARELLKLVADVPCKFNLIPFNPFPE-SGLKRSNNEQIRRFAQILMDA-GIVTTIRK 334
Query: 255 QMGQDISGACGQLVVNLPDKIS-------AKSTP--PVTD 285
G DI ACGQL + D+ K TP PV D
Sbjct: 335 TRGDDIDAACGQLAGEVMDRTRLAERGKFGKITPLVPVAD 374
>gi|386287223|ref|ZP_10064398.1| radical SAM enzyme, Cfr family protein [gamma proteobacterium
BDW918]
gi|385279755|gb|EIF43692.1| radical SAM enzyme, Cfr family protein [gamma proteobacterium
BDW918]
Length = 386
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 160/259 (61%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P G R TLC+SSQVGC + C+FCATG GF +L++ EI+ Q+ A + +
Sbjct: 111 PDGQRGTLCVSSQVGCSLDCSFCATGKQGFMRDLTAAEIIGQVWLAIKSYDGFNNGNKRI 170
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ +VEA+ +M + +S +R+T+ST G+V ++K D+ +
Sbjct: 171 VTNVVMMGMGEPLLNFDNVVEAMSLMLDDFGYGLSKRRVTLSTSGVVPMLDKL-GDVSTV 229
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDE 195
+LA+SLHAP ++R Q++P + +P+ +L+ A K Y Q ++ + + IEY ++ GVND
Sbjct: 230 SLAISLHAPNDELRSQLVPINKKYPIAELLAASKRYIAKQDDTHRVVTIEYTLIAGVNDG 289
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA +L ++L VNLIPFNP S+S ++ S++ V+ F ++ + + TTVR
Sbjct: 290 VEHAKELAEVLRDLPCKVNLIPFNPF-SLSNYKRPSNNAVNRFWLVMTEAGYV-TTVRTP 347
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 348 RGDDIDAACGQLAGQVQDR 366
>gi|343501746|ref|ZP_08739615.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
ATCC 19109]
gi|418481170|ref|ZP_13050218.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
gi|342816871|gb|EGU51763.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
ATCC 19109]
gi|384571122|gb|EIF01660.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
Length = 375
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 154/265 (58%), Gaps = 16/265 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R
Sbjct: 99 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ +M L F +S +R+TVST G+V +++ + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALELMLDDLAFGLSKRRVTVSTSGVVSGLDQMTGKI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +IMP + +E + +++ Y ++S + K+ +EY++LD VND+
Sbjct: 218 ALAISLHAPNDKLRSEIMPINDRWDIEDFLASVRRYIQSSNANRGKVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HA +L +LL+ +NLIPFNP S ++ S+ ++ FQK L Y TVRK
Sbjct: 278 MDHARELAELLKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDKISAKST 280
G DI ACGQLV ++ D+ +T
Sbjct: 336 RGDDIDAACGQLVGDVIDRTKRTAT 360
>gi|73541777|ref|YP_296297.1| hypothetical protein Reut_A2089 [Ralstonia eutropha JMP134]
gi|123732898|sp|Q46ZI0.1|RLMN_CUPPJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|72119190|gb|AAZ61453.1| 23S rRNA m(2)A-2503 methyltransferase [Ralstonia eutropha JMP134]
Length = 384
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 160/288 (55%), Gaps = 31/288 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+D NG VE V + P R TLC+SSQ GC + C FC+TG GF
Sbjct: 84 LDVGNGNAVETVYI--------------PEETRGTLCVSSQAGCAVNCRFCSTGKQGFSR 129
Query: 61 NLSSGEIVEQLVHASRLSN------------IRNVVFMGMGEPLNNYAALVEAVRIM-TG 107
NL++GEI+ QL A I NVV MGMGEPL NY A+V A+R+M
Sbjct: 130 NLTTGEIIGQLWMAEFAMREQLGRGPKDDRVISNVVMMGMGEPLLNYDAVVPAMRLMLDD 189
Query: 108 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 167
+ +S +R+T+ST G+V +++ DLP + LAVSLHA +R ++P + +PL +L
Sbjct: 190 NAYGLSRRRVTLSTSGVVPMMDRLSKDLP-VALAVSLHASNDALRDVLVPLNKKYPLAEL 248
Query: 168 MNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 226
M A + Y + + + I EY MLDGVND +HA +L KL+ NLIPFNP S
Sbjct: 249 MAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPE-SG 307
Query: 227 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
+ S++D++ F ++L + I TT+RK G DI ACGQL + D+
Sbjct: 308 LKRSNNDQIRRFAQVLMDA-GIVTTIRKTRGDDIDAACGQLAGEVKDR 354
>gi|262276957|ref|ZP_06054750.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114]
gi|262224060|gb|EEY74519.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114]
Length = 357
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 153/249 (61%), Gaps = 15/249 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-------IR 81
P STLCISSQVGC + C FC TG NLSS EI+ Q++ A N I
Sbjct: 100 PSETHSTLCISSQVGCTLNCKFCHTGIQPLVKNLSSNEIISQILIAKDELNDWKEQKKIN 159
Query: 82 NVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
N+V+MGMGEP N+ + ++V I+ GL F S K+ITVST GI I K +++ G
Sbjct: 160 NIVYMGMGEPFYNFENIKKSVEILKDENGLNF--SNKKITVSTSGISPNIKKAANEI-GT 216
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQH 198
LA+SLHAP ++R +IMP + + +E ++ +Y K + +KIFIEY++L VND EQ
Sbjct: 217 YLALSLHAPNNEIRNEIMPINKKYNIENIIEHCSQYAKENGEKIFIEYVLLKDVNDTEQC 276
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L K++ F +NLI FNP V +++T++ ++ S F +I++ + ++ T+RK G
Sbjct: 277 AKELSKIMSQFPCKLNLIQFNPWPGV-KYKTATKEQTSKFIEIIKKNGHV-VTLRKSRGD 334
Query: 259 DISGACGQL 267
DI GACGQL
Sbjct: 335 DILGACGQL 343
>gi|384245068|gb|EIE18564.1| hypothetical protein COCSUDRAFT_60231 [Coccomyxa subellipsoidea
C-169]
Length = 399
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 165/293 (56%), Gaps = 46/293 (15%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGG--PRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
G VEAVI+ + RPG PR+TLC+SSQVGC C FC TG MG ++ LS
Sbjct: 96 GAGVEAVIIPVE----------RPGASRPRTTLCVSSQVGCAQNCQFCFTGRMGLRAQLS 145
Query: 64 SGEIVEQLVHASR-------------------LSNIRNVVFMGMGEPLNNYAALVEAVRI 104
+ +IVEQ+V A R ++ I N+VFMGMGEPL+N A++ A+ +
Sbjct: 146 AAQIVEQVVEARRHVADHNQRVAAGECSGAAPIAPISNIVFMGMGEPLHNAEAVITALEV 205
Query: 105 M---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 161
+ GL F SP ++TVSTVG+V + + + + LAVSLHA +VR I+P R
Sbjct: 206 LCHPQGLQF--SPNKVTVSTVGLVPQMRQL-ALTSAVQLAVSLHATTDEVRNWIVPLNRR 262
Query: 162 FPLEKLMNALKE-YQKNSQ------QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVN 214
+PL LM AL+E Y +N++ + + EY+ML GVND + A +L +L + VN
Sbjct: 263 YPLAVLMGALEELYPRNAELRPRAGRHVLFEYVMLRGVNDTLEDAERLVRLTAAIECKVN 322
Query: 215 LIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
LI FNP + FR S+ ++V FQ +L+ + + TVR G D ACGQL
Sbjct: 323 LILFNPHAG-TPFRASTQEQVLEFQAVLKAA-GLVCTVRDSRGDDEMAACGQL 373
>gi|297564808|ref|YP_003683780.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946]
gi|296849257|gb|ADH62272.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946]
Length = 344
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 146/252 (57%), Gaps = 12/252 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS-----NIRNV 83
P R T+CISS VGC GC FCATG MGF NL++ EI++Q++ A+ IRNV
Sbjct: 96 PYAGRKTICISSMVGCPAGCTFCATGKMGFGRNLTAAEILDQILFAAHHQGHSPREIRNV 155
Query: 84 VFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 140
V MGMGEPL N ++EA+R M GL +SP+RIT+STVGI I + + G+ L
Sbjct: 156 VLMGMGEPLLNLNHVLEAIRRMLDPQGL--AMSPRRITLSTVGIPRGIYRLAQEDLGVRL 213
Query: 141 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAH 200
A+SLHAP R +I+P A + + ++M A++ Y +++++ +EY +L G+ND A
Sbjct: 214 ALSLHAPDDQTRQKIIPTAHRYSIAEIMEAVRHYYAQTKRRVTLEYTLLKGLNDHPWQAR 273
Query: 201 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
L LL VNLIP+NP + + +K+ +F L I +VR G+D+
Sbjct: 274 ALAGLLAGLSAHVNLIPWNPWEGAPH-QGTGKEKILAFAAALE-RMGIPVSVRWSRGRDV 331
Query: 261 SGACGQLVVNLP 272
ACGQL + P
Sbjct: 332 GAACGQLALQQP 343
>gi|31789377|gb|AAP58494.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
Length = 413
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/271 (38%), Positives = 163/271 (60%), Gaps = 10/271 (3%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V + ++ G +G PR R T C+S+QVGC M C FC TG MG +L++
Sbjct: 132 DGRHIESVFIPDETPAGP-DGSPRAA--RITFCVSTQVGCAMKCAFCLTGKMGIDRSLTA 188
Query: 65 GEIVEQLVHASR----LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 119
GEI Q+ +R L N+V MGMGEPL+NY ++A+R++ F +S +R+T+
Sbjct: 189 GEIAGQVRVLARELGFLETRFNIVLMGMGEPLHNYEETMKALRVLADEHGFAMSARRMTL 248
Query: 120 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 179
STVG++ A+ + ++ NLA+SLHA +D R ++P R + L++L++A + + +
Sbjct: 249 STVGVLPALERLATEPLMPNLAISLHATTEDQRDLLVPINRKYGLKELLDACRRFPLKRR 308
Query: 180 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 239
++I EY++L VND + A +L KLL + VNL+P N + F SDD+V+SF
Sbjct: 309 ERITFEYVLLREVNDTPEDARRLVKLLHGIKGKVNLLPLNEAAGIP-FERPSDDRVNSFA 367
Query: 240 KILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
+IL + I +VRK G+DI ACGQL+
Sbjct: 368 RIL-ADHGIPVSVRKSRGRDIRAACGQLITE 397
>gi|296123027|ref|YP_003630805.1| radical SAM protein [Planctomyces limnophilus DSM 3776]
gi|296015367|gb|ADG68606.1| radical SAM enzyme, Cfr family [Planctomyces limnophilus DSM 3776]
Length = 408
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/272 (39%), Positives = 154/272 (56%), Gaps = 21/272 (7%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ +G VE V+MR D R T+CIS+QVGC MGC FCA+G +G K
Sbjct: 135 LQLHDGSLVECVLMREDD--------------RRTICISTQVGCGMGCVFCASGLLGLKR 180
Query: 61 NLSSGEIVEQLVHASRL----SNIRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPK 115
NL++GEI+EQ++ RL + NVV MGMGEPL N L+ A+ R+ + +
Sbjct: 181 NLTTGEILEQVLRLDRLLPADEKLTNVVVMGMGEPLANLKNLLPALDRLTADDGLGLGAR 240
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
RITVSTVG+ I + NLAVSLHAP ++R +++P + +E ++ A +Y
Sbjct: 241 RITVSTVGLPEKIRELAQTGHQFNLAVSLHAPEAELRTKLVPVNKNIGIEAVLEAADDYF 300
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235
+ +++ EY++L G+ND +HA QLG LL++ VNLIP N + + F S +
Sbjct: 301 AITGRRVSYEYVLLGGINDLPEHARQLGHLLKSRIAHVNLIPMNGVKELP-FAEPSAPQT 359
Query: 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
F IL S+ + TVRK+ G DI ACGQL
Sbjct: 360 GEFVAILE-SFGVPVTVRKRKGADIDAACGQL 390
>gi|416086880|ref|ZP_11587562.1| radical SAM enzyme, Cfr family [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348009813|gb|EGY49923.1| radical SAM enzyme, Cfr family [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
Length = 311
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 37 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGVRP 96
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 97 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 155
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD +ND
Sbjct: 156 ALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDH 215
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 216 VEHAHQLAAVLKNTPCKINLIPWNPFPQ-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 273
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 274 RGDDIDAACGQLAGDVIDR 292
>gi|289578505|ref|YP_003477132.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
gi|289528218|gb|ADD02570.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
Length = 342
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 156/237 (65%), Gaps = 6/237 (2%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-SRLSNIRNVVFMGMGEPL 92
+T C+S+QVGC M C+FCA+ G +L + E+V+Q++ S I N+V MG GEP
Sbjct: 101 NTACVSTQVGCNMRCSFCASAIGGKVRDLKASEMVDQVMSIDSDYGKISNIVLMGSGEPF 160
Query: 93 NNYAALVEAVRIMTGLPFQ--VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 150
+NY +++ ++I+ P+ + + IT+ST GI+ I +F + +NL++SLHAP +
Sbjct: 161 DNYDEVMKFIKIVNN-PYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHAPNDE 219
Query: 151 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 210
+R Q+MP +A+PLE+LM A K Y + ++++I EY +++GVND+++HA+QL LL+
Sbjct: 220 LRTQLMPINKAYPLEELMKACKYYIEKTRRRITFEYSLIEGVNDKKEHAYQLVDLLKGML 279
Query: 211 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLIP N + + F+ ++++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 280 CHVNLIPINYVKEIG-FKKAANEKVMMFKKIIENA-GISCTVRRELGSDIEAACGQL 334
>gi|29349780|ref|NP_813283.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
thetaiotaomicron VPI-5482]
gi|383120719|ref|ZP_09941443.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
1_1_6]
gi|81442826|sp|Q89ZK5.1|RLMN_BACTN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|29341691|gb|AAO79477.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482]
gi|251840237|gb|EES68319.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
1_1_6]
Length = 345
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 149/240 (62%), Gaps = 4/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLCISSQVGCKM C FC TG G+ +NL++ +I+ Q+ + NVV MGM
Sbjct: 98 PDDERATLCISSQVGCKMNCKFCMTGKQGYSANLTAHQIINQIHSLPERDKLTNVVMMGM 157
Query: 89 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEPL+N +++A+ I+TG + SPKRITVSTVG+ + +F + +LA+SLH+P
Sbjct: 158 GEPLDNLEEVLKALDILTGSYGYAWSPKRITVSTVGLRKGLRRFIEE-SDCHLAISLHSP 216
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
V R ++MPA +AF + +++ LK Y + Q+++ EYI+ G+ND + +A +L KLL
Sbjct: 217 VTAQRAELMPAEKAFSITEMVELLKNYDFSKQRRLSFEYIVFKGLNDSQVYAKELLKLLR 276
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+NLI F+ I V+ + D ++ F+ L ++ + TT+R G+DI ACG L
Sbjct: 277 GLDCRMNLIRFHSIPGVA-LEGADMDTMTRFRDYL-TTHGLFTTIRASRGEDIFAACGML 334
>gi|440694325|ref|ZP_20876953.1| 23S rRNA m2A2503 methyltransferase [Streptomyces turgidiscabies
Car8]
gi|440283689|gb|ELP70915.1| 23S rRNA m2A2503 methyltransferase [Streptomyces turgidiscabies
Car8]
Length = 370
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/279 (38%), Positives = 152/279 (54%), Gaps = 29/279 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE+V+MRY R T+CISSQ GC M C FCATG G NLS+
Sbjct: 106 DGTLVESVLMRYPD--------------RVTMCISSQAGCGMNCPFCATGQAGLDRNLST 151
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
EIV Q+V R + + N+VFMGMGEPL NY +V A+R +T
Sbjct: 152 AEIVHQIVDGMRALRDGEIPGGPARLSNIVFMGMGEPLANYKRVVGAIRALTDPAPDGMG 211
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V AIN+F + LA+SLHAP ++R ++P + + ++++A
Sbjct: 212 LSQRGITVSTVGLVPAINRFSDEGFKCRLAISLHAPDDELRDTLVPVNTRWKVREVLDAG 271
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
EY S +++ IEY M+ +ND+ +LG+LL V VNLIP NP +
Sbjct: 272 WEYAAKSGRRLSIEYAMIRDINDQAWRGDRLGRLLRGKPVHVNLIPLNPTPGSKWTASRP 331
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
+D+ + + I ++ + TVR GQ+I GACGQL
Sbjct: 332 EDEKAFVEAI--AAHGVPVTVRDTRGQEIDGACGQLAAT 368
>gi|416052916|ref|ZP_11578551.1| hypothetical protein SC1083_1732 [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|418464924|ref|ZP_13035863.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|347991708|gb|EGY33171.1| hypothetical protein SC1083_1732 [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|359756879|gb|EHK91036.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 379
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 105 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGVRP 164
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 165 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 223
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD +ND
Sbjct: 224 ALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDH 283
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 284 VEHAHQLAAVLKNTPCKINLIPWNPFPQ-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 341
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 342 RGDDIDAACGQLAGDVIDR 360
>gi|339326398|ref|YP_004686091.1| ribosomal RNA large subunit methyltransferase N [Cupriavidus
necator N-1]
gi|338166555|gb|AEI77610.1| ribosomal RNA large subunit methyltransferase N [Cupriavidus
necator N-1]
Length = 384
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/260 (42%), Positives = 152/260 (58%), Gaps = 17/260 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLC+SSQ GC + C FC+TG GF NLS+GEI+ QL A
Sbjct: 98 PEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMREQLGRGPKD 157
Query: 80 ---IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDL 135
I NVV MGMGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ DL
Sbjct: 158 DRVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDL 217
Query: 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVND 194
P + LAVSLHA +R ++P + +PL +LM A + Y + + + I EY MLDGVND
Sbjct: 218 P-VALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVND 276
Query: 195 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 254
+HA +L KL+ NLIPFNP S + S++D++ F ++L + I TT+RK
Sbjct: 277 GVEHARELLKLVADVPCKFNLIPFNPFPE-SGLKRSNNDQIRRFAQVLMDA-GIVTTIRK 334
Query: 255 QMGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 335 TRGDDIDAACGQLAGEVKDR 354
>gi|402299716|ref|ZP_10819295.1| ribosomal RNA large subunit methyltransferase N [Bacillus
alcalophilus ATCC 27647]
gi|401725117|gb|EJS98426.1| ribosomal RNA large subunit methyltransferase N [Bacillus
alcalophilus ATCC 27647]
Length = 359
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 161/276 (58%), Gaps = 30/276 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+M++ L ++C+++QVGC +GC+FCA+G + +L+S
Sbjct: 87 DGNLIETVLMKHKYGL--------------SVCVTTQVGCNIGCSFCASGLLRKSRDLTS 132
Query: 65 GEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALV---EAVRIMTGLPFQVSP 114
GEIVEQ++ + RN +V MG+GEP +N+ +V E V+ GL +
Sbjct: 133 GEIVEQIMKVQLHLDTRNNDERVSHIVVMGIGEPFDNFTNMVDFLEIVKDQKGLA--IGA 190
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST GIV I +F +NLA+SLHAP ++R QIM RAFP+EKLM+++ Y
Sbjct: 191 RHITVSTSGIVPKIYEFADLKLQVNLAISLHAPNNELRTQIMKVNRAFPIEKLMDSVDYY 250
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ---VVVNLIPFNPIGSVSQFRTSS 231
+ S ++I EYI+L GVND+++HA +L L+ T + VNLIP+NP+ Q++ S
Sbjct: 251 LEKSNRRITFEYILLKGVNDQKEHALELANLIGTSRRKLTYVNLIPYNPVDEHGQYQRSD 310
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ + F L+ I VR + G DI ACGQL
Sbjct: 311 NEDIRIFFDTLKKK-GINCGVRLEHGTDIDAACGQL 345
>gi|303252097|ref|ZP_07338266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307248296|ref|ZP_07530322.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302649079|gb|EFL79266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306855230|gb|EFM87407.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 393
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 119 PEDDRATLCVSSQVGCALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 178
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ IM + +S +R+T+ST G+V A++ + +
Sbjct: 179 ITNVVMMGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKI-DV 237
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + +E LM+++ +Y + S K+ IEY++LD VND
Sbjct: 238 ALAISLHAPNDELRDEIMPINKKYNIEMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDG 297
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ +V FQK L Y VRK
Sbjct: 298 TEHAHQLAEVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVIVRKT 355
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 356 RGDDIDAACGQLAGDVIDR 374
>gi|229846452|ref|ZP_04466560.1| hypothetical protein CGSHi7P49H1_07265 [Haemophilus influenzae
7P49H1]
gi|229810545|gb|EEP46263.1| hypothetical protein CGSHi7P49H1_07265 [Haemophilus influenzae
7P49H1]
Length = 383
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 108 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 167
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 168 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 226
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 227 ALAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDG 286
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y+ +RK
Sbjct: 287 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYDFTVIIRKT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 345 RGDDIDAACGQLAGDVIDR 363
>gi|386810868|ref|ZP_10098094.1| methyltransferase [planctomycete KSU-1]
gi|386405592|dbj|GAB60975.1| methyltransferase [planctomycete KSU-1]
Length = 352
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 154/245 (62%), Gaps = 13/245 (5%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-------SRLSNIRNV 83
G R T+C+S+QVGC M C FCA+G G + NL++GEIVEQ +H RL+NI
Sbjct: 102 GKRITVCVSTQVGCAMACRFCASGMPGLERNLNAGEIVEQALHVKNHLPPDERLTNI--- 158
Query: 84 VFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 142
VFMG+GEPL NY +++A+RI+ + +RIT+STVG + I++ + +NLA+
Sbjct: 159 VFMGIGEPLANYDNVIKAIRIINAKWGLGIGARRITISTVGNIRGIHRLAQEELQINLAI 218
Query: 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 202
SLHAP R +I+P+ + ++ ++ A +EY +++ + I EYI++DG+N Q A L
Sbjct: 219 SLHAPDDVTRSKIIPSNKKTGIKNIIAATQEYFQSTGRDISFEYILIDGMNASRQDAESL 278
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
+LL+ Q +NL+P NPI + F+ S + + +F KIL+ + + T+R++ G I+
Sbjct: 279 ARLLKGIQCNINLLPLNPIEEFN-FKPPSREAIETFCKILK-KHGLIVTLRRKKGDHINA 336
Query: 263 ACGQL 267
ACGQL
Sbjct: 337 ACGQL 341
>gi|444349481|ref|ZP_21156908.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|443544554|gb|ELT54520.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 394
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 112 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGVRP 171
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 172 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 230
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD +ND
Sbjct: 231 ALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDH 290
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 291 VEHAHQLAAVLKNTPCKINLIPWNPFPQ-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 348
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 349 RGDDIDAACGQLAGDVIDR 367
>gi|406907380|gb|EKD48226.1| hypothetical protein ACD_65C00058G0006, partial [uncultured
bacterium]
Length = 312
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 151/242 (62%), Gaps = 17/242 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G +E+V+MR+ R G R T+C+SSQVGC + C FCATG MGFK +LS
Sbjct: 81 KDGKKIESVLMRF-----------RDG--RRTVCVSSQVGCAVKCVFCATGKMGFKRSLS 127
Query: 64 SGEIVEQLVH--ASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVS 120
EI +Q+++ I NVVFMGMGEP NNY ++ A R + + + IT+S
Sbjct: 128 YEEIADQVLYFVLDSEEEITNVVFMGMGEPFNNYENVLRACRHLNDSRGMNLGARNITLS 187
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
T G++ I + + +NLA+SLHAP Q++R +++P A+ +PL +LM+ALKEY + +
Sbjct: 188 TAGVIPGILQLIPEDLQVNLAISLHAPNQELRQELVPIAKKYPLIELMDALKEYTDKTHR 247
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
+I EY+ML GVND AH+LGKLL+ VNLIP+N ++FR S D KV F++
Sbjct: 248 RISYEYVMLAGVNDSLSLAHELGKLLKGRLCHVNLIPYN-FTDKTKFRRSRDQKVEEFKR 306
Query: 241 IL 242
I+
Sbjct: 307 IV 308
>gi|448243474|ref|YP_007407527.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
gi|445213838|gb|AGE19508.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
gi|453061734|gb|EMF02731.1| ribosomal RNA large subunit methyltransferase N [Serratia
marcescens VGH107]
Length = 398
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PEADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGQRP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P R + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPNDTIRDEIVPINRKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AHQL ++L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TDDAHQLAEVLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|404497533|ref|YP_006721639.1| ribosomal RNA large subunit methyltransferase N [Geobacter
metallireducens GS-15]
gi|418065123|ref|ZP_12702498.1| radical SAM enzyme, Cfr family [Geobacter metallireducens RCH3]
gi|123742801|sp|Q39S71.1|RLMN_GEOMG RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|78195136|gb|ABB32903.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter
metallireducens GS-15]
gi|373562755|gb|EHP88962.1| radical SAM enzyme, Cfr family [Geobacter metallireducens RCH3]
Length = 346
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/276 (40%), Positives = 156/276 (56%), Gaps = 22/276 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G VE+V++ P R+TLCISSQVGC M C FC TGT NL+
Sbjct: 88 EDGNTVESVLI--------------PEEDRTTLCISSQVGCAMACEFCLTGTFRLTRNLT 133
Query: 64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVS 120
+GEIV Q+ R +RN+VFMGMGEPL N +V+A++I+ GL F S +R+TVS
Sbjct: 134 AGEIVNQICAVRRDVPVRNIVFMGMGEPLANLDNVVKALKIILHDDGLQF--STRRVTVS 191
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
T G+V + + ++ +NLAVSL+A +VR +IMP R +PL L++A + Y ++
Sbjct: 192 TSGLVPEMERLGREVT-VNLAVSLNATTDEVRDRIMPVNRRYPLRLLLDACRSYPLPGRR 250
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
KI IEY+M+ G+ND + A +L KLL +NLIPFN S F++ + F
Sbjct: 251 KITIEYVMIKGLNDSLEDAKRLVKLLSDISSKINLIPFNEHDGCS-FKSPDQGAIDVFHS 309
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 276
L S + R G DIS ACGQL L +S
Sbjct: 310 YLL-SKHFTVITRSSRGSDISAACGQLKGKLDKNVS 344
>gi|237807659|ref|YP_002892099.1| ribosomal RNA large subunit methyltransferase N [Tolumonas auensis
DSM 9187]
gi|259491997|sp|C4LC34.1|RLMN_TOLAT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|237499920|gb|ACQ92513.1| radical SAM enzyme, Cfr family [Tolumonas auensis DSM 9187]
Length = 373
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+TG GF NL+ EI+ Q+ A+++
Sbjct: 99 PEADRATLCVSSQVGCALECKFCSTGQQGFNRNLTVSEIIGQVWRAAQVVGFPKDTGKRV 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N + LV A+ + M F +S +R+TVST G+V A++K D+ +
Sbjct: 159 ITNVVMMGMGEPLLNLSNLVPALSLMMEDFGFGLSKRRVTVSTSGVVPALDKL-GDMIDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP +R +IMP + +++ + +++ Y S ++ +EY++LD VND+
Sbjct: 218 ALAISLHAPNDKLRSEIMPINDKYNIQEFLGSVQRYLSKSNANHGRVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA +L +LL+ +NLIPFNP S + + S+ +V F K+L Y VRK
Sbjct: 278 MEHARELAELLKDTPSKINLIPFNPFPS-NPYGKPSNSRVDRFSKVLM-EYGYTVIVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|261868678|ref|YP_003256600.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|415769939|ref|ZP_11484554.1| hypothetical protein D17P2_1559 [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|444345782|ref|ZP_21153788.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261414010|gb|ACX83381.1| hypothetical protein D11S_2027 [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348656972|gb|EGY74569.1| hypothetical protein D17P2_1559 [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|443542515|gb|ELT52840.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 379
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 105 PEADRTTLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGVRP 164
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 165 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 223
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD +ND
Sbjct: 224 ALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDH 283
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 284 VEHAHQLAAVLKNTPCKINLIPWNPFPQ-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 341
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 342 RGDDIDAACGQLAGDVIDR 360
>gi|255505596|ref|ZP_05347103.3| radical SAM enzyme, Cfr family [Bryantella formatexigens DSM 14469]
gi|255266841|gb|EET60046.1| 23S rRNA m2A2503 methyltransferase [Marvinbryantia formatexigens
DSM 14469]
Length = 354
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 164/279 (58%), Gaps = 19/279 (6%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
Q+G +E+V+M+Y ++G +++CISSQ GC+MGC FCA+ G +L
Sbjct: 92 QDGNVIESVLMKY------HHG--------NSVCISSQAGCRMGCRFCASTLGGLTRSLL 137
Query: 64 SGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVS 120
GE+++Q+ + S R NVV MG GEPL+NY LV+ + +++ +S + ITVS
Sbjct: 138 PGEMLDQIYKIQKHSGERVSNVVVMGTGEPLDNYENLVKFIHMLSDEHGLNISQRNITVS 197
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
T GIV I + ++ + LA+SLHAP Q+ R ++MP AR + L ++M A + Y + + +
Sbjct: 198 TCGIVPNIYRLAAEKLQITLALSLHAPTQEKRMELMPIARKYELSEVMEACRAYFRETGR 257
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
++ EY ++ GVND ++ A +L LL+ VNLIP NPI S F S ++ F+
Sbjct: 258 RLTFEYSLVGGVNDSQEDARELAVLLDGLNCHVNLIPVNPIKERS-FVQSERRVIADFKT 316
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 279
L Y I T+R++MG+DI GACGQL + D+ +
Sbjct: 317 KLE-KYGINVTIRREMGRDIGGACGQLRKSYLDRTEGEE 354
>gi|271963404|ref|YP_003337600.1| radical SAM protein [Streptosporangium roseum DSM 43021]
gi|270506579|gb|ACZ84857.1| radical SAM protein [Streptosporangium roseum DSM 43021]
Length = 374
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 159/278 (57%), Gaps = 33/278 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE+V+MRY R+T+C+SSQ GC M C FCATG G N+++
Sbjct: 111 DGALVESVLMRYTD--------------RTTMCVSSQAGCGMNCPFCATGQAGLTRNMTT 156
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLP 109
EIVEQ+V +R + NVVFMGMGEPL NY A++ AVR M GL
Sbjct: 157 AEIVEQVVAGARALAAGEVPGGPGRVSNVVFMGMGEPLANYKAVIGAVRRMVEPSPDGL- 215
Query: 110 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 169
+S + +TVSTVG+V AI K ++ + LA+SLHAP ++R ++P + + ++++
Sbjct: 216 -GISARGVTVSTVGLVPAIGKLAAEGLPVTLALSLHAPDDELRDTLVPINTRWKVAEVLD 274
Query: 170 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 229
A Y +++++ IEY ++ +ND+E A LGKL++ V VNLIP NP S++
Sbjct: 275 AAWNYAATTKRRVSIEYALIKDINDQEWRADLLGKLIKNKLVHVNLIPLNPTPG-SKWTA 333
Query: 230 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
S + +F + L + + TVR G++I GACGQL
Sbjct: 334 SRPEDERAFVRRLE-FHGVPVTVRDTRGREIDGACGQL 370
>gi|113868341|ref|YP_726830.1| Fe-S-cluster redox protein [Ralstonia eutropha H16]
gi|123032871|sp|Q0K959.1|RLMN_CUPNH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|113527117|emb|CAJ93462.1| Predicted Fe-S-cluster redox enzyme [Ralstonia eutropha H16]
Length = 384
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/260 (42%), Positives = 152/260 (58%), Gaps = 17/260 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLC+SSQ GC + C FC+TG GF NLS+GEI+ QL A
Sbjct: 98 PEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMREQLGRGPKD 157
Query: 80 ---IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDL 135
I NVV MGMGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ DL
Sbjct: 158 DRVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDL 217
Query: 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVND 194
P + LAVSLHA +R ++P + +PL +LM A + Y + + + I EY MLDGVND
Sbjct: 218 P-VALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVND 276
Query: 195 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 254
+HA +L KL+ NLIPFNP S + S++D++ F ++L + I TT+RK
Sbjct: 277 GVEHARELLKLVADVPCKFNLIPFNPFPE-SGLKRSNNDQIRRFAQVLMDA-GIVTTIRK 334
Query: 255 QMGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 335 TRGDDIDAACGQLAGEVKDR 354
>gi|294637694|ref|ZP_06715971.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
gi|451965885|ref|ZP_21919140.1| 23S rRNA methyltransferase RlmN [Edwardsiella tarda NBRC 105688]
gi|291089124|gb|EFE21685.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
gi|451315134|dbj|GAC64502.1| 23S rRNA methyltransferase RlmN [Edwardsiella tarda NBRC 105688]
Length = 411
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 137 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKVTGNRP 196
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 197 ITNVVMMGMGEPLLNMTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 255
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R QI+P R + +E + +++ Y + S Q ++ +EY+MLD VND
Sbjct: 256 ALAISLHAPNDAIRDQIVPINRKYNIETFLASVRRYLEKSNANQGRVTVEYVMLDHVNDG 315
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP + F SS+ ++ F K+L Y VRK
Sbjct: 316 TEHAHQLAECLKDTPCKINLIPWNPFPG-APFGRSSNSRIDRFSKVLM-EYGFTVIVRKT 373
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 374 RGDDIDAACGQLAGEVIDR 392
>gi|358067540|ref|ZP_09154018.1| cfr family radical SAM enzyme [Johnsonella ignava ATCC 51276]
gi|356694193|gb|EHI55856.1| cfr family radical SAM enzyme [Johnsonella ignava ATCC 51276]
Length = 344
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 160/274 (58%), Gaps = 19/274 (6%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V MRY +++CISSQVGC+MGC FCA+ G NL++
Sbjct: 86 DGNIIESVFMRYKHG--------------NSVCISSQVGCRMGCTFCASTLGGLVRNLTN 131
Query: 65 GEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 121
E++ Q+ R I N+V MG+GEP++NY +V V +++ + +S + IT+ST
Sbjct: 132 AEMLAQVYSIGRSVGERISNIVIMGVGEPMDNYENIVSFVHMISDIHGLNISQRNITIST 191
Query: 122 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181
GIV I K + + LA+SLHAP R ++MP A + + ++++A Y K + ++
Sbjct: 192 CGIVPQIKKLADEKLSVTLALSLHAPDNITRKRLMPVAEIYDINEVLDACSYYFKKTGRR 251
Query: 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241
+ EY ++ GVND +Q A++L KL++ + VNLIP NPI Q+R S K F+ +
Sbjct: 252 VSFEYALVAGVNDSKQEAYKLIKLIKNQKAHVNLIPVNPIEE-RQYRQSDKKKAEDFKNL 310
Query: 242 LRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 275
L + I TT+R++MG+DI GACGQL + D I
Sbjct: 311 LLKA-GINTTIRREMGRDIDGACGQLRRHYEDGI 343
>gi|416106782|ref|ZP_11590031.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348005984|gb|EGY46450.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
Length = 364
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 90 PEADRTTLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGVRP 149
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 150 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 208
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD +ND
Sbjct: 209 ALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDH 268
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 269 VEHAHQLAAVLKNTPCKINLIPWNPFPQ-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 326
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 327 RGDDIDAACGQLAGDVIDR 345
>gi|416076401|ref|ZP_11585482.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|348005005|gb|EGY45495.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
Length = 379
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 105 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGVRP 164
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 165 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 223
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD +ND
Sbjct: 224 ALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDH 283
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 284 VEHAHQLAAVLKNTPCKINLIPWNPFPQ-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 341
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 342 RGDDIDAACGQLAGDVIDR 360
>gi|261409887|ref|YP_003246128.1| Cfr family radical SAM protein [Paenibacillus sp. Y412MC10]
gi|261286350|gb|ACX68321.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
Length = 353
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/273 (36%), Positives = 164/273 (60%), Gaps = 25/273 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+MR+ L ++C+++QVGC +GC+FCA+G + +LS+
Sbjct: 87 DGNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKKSRDLSA 132
Query: 65 GEIVEQL----VHASRL---SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
EIVEQ+ +H R + ++V MG+GEP +NY + + +R++ + P+
Sbjct: 133 AEIVEQVMQVQLHLDRRGSSERVSHLVVMGIGEPFDNYENMSDFIRVIKDHKGLAIGPRH 192
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
ITVST G+ + I +F G+NLA+SLHAP ++R +IM +A P+EKLM A+ Y +
Sbjct: 193 ITVSTSGLANKIVEFADSDLGVNLAISLHAPNDEIRTRIMKINKAIPIEKLMAAIDYYLE 252
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDDK 234
+ ++I +EYI+L VND+ +HA +L +L+ + + VNLIP+NP+ SQ++ S+ +
Sbjct: 253 KTNRRITLEYILLKDVNDQREHALELAELVGERRNLANVNLIPYNPVDEHSQYQRSTKES 312
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+++F L+ I +VR + G DI ACGQL
Sbjct: 313 ITAFYDTLKKQ-GISCSVRLEHGTDIDAACGQL 344
>gi|406941482|gb|EKD73958.1| hypothetical protein ACD_45C00125G0007 [uncultured bacterium]
Length = 368
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/257 (40%), Positives = 155/257 (60%), Gaps = 14/257 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R TLC+SSQVGC + C+FC+TG GF NL++ EI+ Q+ A R
Sbjct: 103 PEKTRGTLCVSSQVGCTLNCDFCSTGKQGFSRNLTTDEIIGQVWLAVRHFAKNHRVHDHA 162
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A+ IM + +S +R+T+ST G+V A+ + ++ +
Sbjct: 163 ITNVVMMGMGEPLLNFENVVNAMDIMLDDFAYGLSKRRVTLSTAGVVPAMYELR-NVSDV 221
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R ++P + +PL++LM A KEY K +++ + +EY+ML G+ND ++
Sbjct: 222 ALAVSLHAPNDELRNVLVPLNKKYPLKELMTACKEYFKEDKRRYVTMEYVMLAGINDTDE 281
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL +LL + VNLIPFNP + S ++ S + F++ L + I RK G
Sbjct: 282 HAQQLIRLLNGIRAKVNLIPFNPFPNTS-YQRSDAPTIDRFRETLMHA-GINAITRKTRG 339
Query: 258 QDISGACGQLVVNLPDK 274
I ACGQLV + D+
Sbjct: 340 DAIDAACGQLVGQVKDR 356
>gi|428767395|ref|YP_007153506.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis str. Symbioflor 1]
gi|427185568|emb|CCO72792.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis str. Symbioflor 1]
Length = 357
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 158/275 (57%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + L ++C+++QVGC +GC FCA+G + + +L++
Sbjct: 87 DKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASGLLKKQKDLTA 132
Query: 65 GEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEIV Q++ + R +VV MG+GEP +NYA ++ +R + GL +
Sbjct: 133 GEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTINDDKGLA--IGA 190
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+EKLM A+ EY
Sbjct: 191 RHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMAAIDEY 250
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + +++ EYIML VND +HA QL LL + + VNLIP+NP+ Q+ SS
Sbjct: 251 IEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSK 310
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ V F +L+ + I +RK+ G DI ACGQL
Sbjct: 311 EAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|354724673|ref|ZP_09038888.1| ribosomal RNA large subunit methyltransferase N [Enterobacter mori
LMG 25706]
Length = 388
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + ++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L +LL+ +NLIP++P R SS+ ++ F K+L Y T VRK
Sbjct: 293 TEHAHELAELLKDTPCKINLIPWSPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|365966432|ref|YP_004947994.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|365745345|gb|AEW76250.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans ANH9381]
Length = 379
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 105 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGVRP 164
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 165 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 223
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD +ND
Sbjct: 224 ALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDH 283
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 284 VEHAHQLAAVLKNTPCKINLIPWNPFPQ-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 341
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 342 RGDDIDAACGQLAGDVIDR 360
>gi|120601511|ref|YP_965911.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
vulgaris DP4]
gi|205829747|sp|A1VAL8.1|RLMN_DESVV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120561740|gb|ABM27484.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfovibrio vulgaris DP4]
Length = 364
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 113/275 (41%), Positives = 164/275 (59%), Gaps = 27/275 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE V++ S R G R T C+S QVGC MGC FC+TGTMGF+ N++
Sbjct: 86 DGALVETVLIPSAS---------REGTLRITQCLSCQVGCAMGCTFCSTGTMGFERNMTM 136
Query: 65 GEIVEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVS 113
GEI+ Q LV + L + +RN+VFMGMGEPL N ++ ++R + GL F S
Sbjct: 137 GEILGQVLVARAHLGDSRPDHPILRNLVFMGMGEPLLNLNEVMRSLRTLNDEFGLSF--S 194
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 172
P+RITVST GI + + GL LAVSLHAP Q++R +IMP A + L+ L+ AL+
Sbjct: 195 PRRITVSTCGIEKGLRELGES--GLAFLAVSLHAPNQEIRKRIMPKAAHWHLDDLITALE 252
Query: 173 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 232
Y +++++ EY++L GVND +HA +L +L+ + +NLI +NP + +
Sbjct: 253 SYPLKTRERVTFEYLLLGGVNDGIEHARELVRLVSRTKGKLNLIVYNP-AEGDPYDAPTP 311
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+++ +F++ L S NI +RK GQDI ACGQL
Sbjct: 312 ERILAFEQYL-WSKNITAIIRKSKGQDIKAACGQL 345
>gi|374314275|ref|YP_005060704.1| 2-vinyl bacteriochlorophyllide hydratase [Serratia symbiotica str.
'Cinara cedri']
gi|363988501|gb|AEW44692.1| 23S rRNA m2A2503 methyltransferase [Serratia symbiotica str.
'Cinara cedri']
Length = 377
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/273 (39%), Positives = 162/273 (59%), Gaps = 18/273 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ------LVHASRLSNIR- 81
P R+TLC+SSQVGC + C FCAT GF NL EI+ Q ++ A + ++ R
Sbjct: 103 PDRDRATLCLSSQVGCALECKFCATAQQGFNRNLCVSEIIGQVWRAIKIIRAMKFTDARP 162
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
N+V MGMGEPL N +V A++IM F +S +RIT+ST G+V A++K SD+ +
Sbjct: 163 VTNIVMMGMGEPLLNLKNVVSAIKIMQDDFGFGLSKRRITLSTSGVVPALDKL-SDMIDV 221
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + +E ++ A++ Y K +Q ++ IEY+ML+ VND
Sbjct: 222 ALAISLHAPNNKIRNEIVPMNSKYNIESVLAAVRRYLAKSKANQGRVTIEYVMLEYVNDS 281
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL ++L++ +NLIP+N + + S++ +V SF K+L Y T +R+
Sbjct: 282 TKDAHQLAEILKSTPCKINLIPWNAFPG-APYSRSANSRVDSFMKVLM-KYGFTTIIRRT 339
Query: 256 MGQDISGACGQLVVNLPDKISAKSTPPVTDIED 288
G DI ACGQLV + D+ + T IED
Sbjct: 340 RGADIDAACGQLVGEVIDR--TQRTLKNKKIED 370
>gi|85059741|ref|YP_455443.1| ribosomal RNA large subunit methyltransferase N [Sodalis
glossinidius str. 'morsitans']
gi|123752598|sp|Q2NS37.1|RLMN_SODGM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|84780261|dbj|BAE75038.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 393
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 119 PEDDRATLCVSSQVGCALQCTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 178
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A+ K D+ +
Sbjct: 179 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALEKL-GDMIDV 237
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P R + +E ++A++ Y S + ++ +EY+MLD +ND
Sbjct: 238 ALAISLHAPNDTIRDEIVPINRKYNIETFLSAVRCYLDKSNANKGRVTVEYVMLDHINDG 297
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL L+ +NLIP+NP R SS+ +V F K+L G Y T VRK
Sbjct: 298 TEHAHQLAACLKYTPCKINLIPWNPFPGAPYGR-SSNSRVDRFAKVLMG-YEFTTIVRKT 355
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 356 RGDDIDAACGQLAGEVIDR 374
>gi|444344086|ref|ZP_21152412.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|443544811|gb|ELT54724.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 386
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 112 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGVRP 171
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 172 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 230
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD +ND
Sbjct: 231 ALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDH 290
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 291 VEHAHQLAAVLKNTPCKINLIPWNPFPQ-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 348
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 349 RGDDIDAACGQLAGDVIDR 367
>gi|46581308|ref|YP_012116.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
vulgaris str. Hildenborough]
gi|387154527|ref|YP_005703463.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris RCH1]
gi|81404173|sp|Q727F1.1|RLMN_DESVH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|46450729|gb|AAS97376.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str.
Hildenborough]
gi|311234971|gb|ADP87825.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris RCH1]
Length = 364
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 113/275 (41%), Positives = 164/275 (59%), Gaps = 27/275 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE V++ S R G R T C+S QVGC MGC FC+TGTMGF+ N++
Sbjct: 86 DGALVETVLIPSAS---------REGTLRITQCLSCQVGCAMGCTFCSTGTMGFERNMTM 136
Query: 65 GEIVEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVS 113
GEI+ Q LV + L + +RN+VFMGMGEPL N ++ ++R + GL F S
Sbjct: 137 GEILGQVLVARAHLGDSRPDHPILRNLVFMGMGEPLLNLNEVMRSLRTLNDEFGLSF--S 194
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 172
P+RITVST GI + + GL LAVSLHAP Q++R +IMP A + L+ L+ AL+
Sbjct: 195 PRRITVSTCGIEKGLRELGES--GLAFLAVSLHAPNQEIRKRIMPKAAHWHLDDLITALE 252
Query: 173 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 232
Y +++++ EY++L GVND +HA +L +L+ + +NLI +NP + +
Sbjct: 253 SYPLKTRERVTFEYLLLGGVNDGIEHARELVRLVSRTKGKLNLIVYNP-AEGDPYDAPTP 311
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+++ +F++ L S NI +RK GQDI ACGQL
Sbjct: 312 ERILAFEQYL-WSKNITAIIRKSKGQDIKAACGQL 345
>gi|16272313|ref|NP_438526.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae Rd KW20]
gi|260580572|ref|ZP_05848400.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae RdAW]
gi|1175973|sp|P44665.1|RLMN_HAEIN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|1573332|gb|AAC22023.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260092914|gb|EEW76849.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae RdAW]
Length = 390
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 115 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 174
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 175 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 233
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 234 ALAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDG 293
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y+ +RK
Sbjct: 294 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYDFTVIIRKT 351
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 352 RGDDIDAACGQLAGDVIDR 370
>gi|304404145|ref|ZP_07385807.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
gi|304347123|gb|EFM12955.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
Length = 356
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/267 (38%), Positives = 155/267 (58%), Gaps = 26/267 (9%)
Query: 9 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 68
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL++GEIV
Sbjct: 98 IETVVMRHNYG--------------NSICVTTQVGCRVGCTFCASTLGGLKRNLTAGEIV 143
Query: 69 EQLVHASRLSNIRN-----VVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVS 120
Q+V A +L + N +V MG GEP NY + +RIM GL + + ITVS
Sbjct: 144 AQVVWAQQLLDATNERVSSIVIMGTGEPFENYEPTMNFLRIMIHEKGL--NIGQRHITVS 201
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
T GIV I KF + +NLA+S+HAP +R ++MP R FP +M +L+ Y + +
Sbjct: 202 TSGIVPNIYKFADENTQINLAISIHAPNDALRSKLMPVNRRFPFNDVMESLRYYIAKTGR 261
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
+I EY ++ GVND +HA +L ++L+ VNLIP N + + RT DD + FQ+
Sbjct: 262 RITFEYALIGGVNDRPEHAEELAQVLQGMLCHVNLIPVNHVPERNYVRTPRDD-IFEFQR 320
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQL 267
IL + I T+R++ G DI+ ACGQL
Sbjct: 321 ILE-KHKINATIRREQGHDIAAACGQL 346
>gi|145640315|ref|ZP_01795899.1| hypothetical protein CGSHiR3021_09660 [Haemophilus influenzae
R3021]
gi|145274901|gb|EDK14763.1| hypothetical protein CGSHiR3021_09660 [Haemophilus influenzae
22.4-21]
Length = 383
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 108 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 167
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 168 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 226
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 227 ALAISLHAPNDELRDEIVPINKKYNIQMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDG 286
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y+ +RK
Sbjct: 287 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYDFTVIIRKT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 345 RGDDIDAACGQLAGDVIDR 363
>gi|119897215|ref|YP_932428.1| hypothetical protein azo0924 [Azoarcus sp. BH72]
gi|205829650|sp|A1K3Y6.1|RLMN_AZOSB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|119669628|emb|CAL93541.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 375
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/267 (41%), Positives = 154/267 (57%), Gaps = 24/267 (8%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLC+SSQ GC + C FC+TG GF NL++ EI+ QL A++L
Sbjct: 98 PETNRGTLCVSSQAGCALDCAFCSTGKQGFNRNLTAAEIIGQLWLANKLLGAARDAAADL 157
Query: 80 ----------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAI 128
I NVV MGMGEPL N+ +V A+R+M + +S +R+TVST GIV AI
Sbjct: 158 EAGEKDNGRIISNVVMMGMGEPLANFDNVVTALRLMLDDHAYGLSRRRVTVSTSGIVPAI 217
Query: 129 NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYI 187
++ + P + LAVSLHA +R +++P + +PL +LM A + Y ++ + I EY+
Sbjct: 218 DRLRDECP-VALAVSLHASNDALRDRLVPINQKYPLRELMAACQRYLERAPRDFITFEYV 276
Query: 188 MLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 247
MLDGVND+E HA +L L+ NLIPFNP + S F+ S+ +++ F IL +
Sbjct: 277 MLDGVNDQEAHARELIALVRDVPCKFNLIPFNPFPN-SGFQRSNAERIRRFAGILLDA-G 334
Query: 248 IRTTVRKQMGQDISGACGQLVVNLPDK 274
I TT RK G D+ ACGQL + DK
Sbjct: 335 IVTTTRKTRGDDVDAACGQLAGQVQDK 361
>gi|159900818|ref|YP_001547065.1| ribosomal RNA large subunit methyltransferase N [Herpetosiphon
aurantiacus DSM 785]
gi|205829775|sp|A9AY55.1|RLMN_HERA2 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|159893857|gb|ABX06937.1| radical SAM enzyme, Cfr family [Herpetosiphon aurantiacus DSM 785]
Length = 363
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 156/283 (55%), Gaps = 33/283 (11%)
Query: 3 CQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNL 62
C +E V+M Y R+T+C+S+Q GC MGC FCATG +G N+
Sbjct: 83 CPGDAVIETVLMIYPPD-------------RATICVSTQAGCAMGCVFCATGKLGLLRNI 129
Query: 63 SSGEIVEQLVHASRL-----------------SNIRNVVFMGMGEPLNNYAALVEAV-RI 104
SSGEI+EQ+++ R +I N+VFMGMGEP NY AV R+
Sbjct: 130 SSGEIMEQVLYFERYLRNEGAAIAKRHGGPVPDHITNLVFMGMGEPFANYERWWAAVERL 189
Query: 105 MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 164
F + + +TVSTVG+V I + + +NLAVSLHAP +R ++MP F +
Sbjct: 190 NDKQGFNLGARNMTVSTVGLVKGIRQLADEALQVNLAVSLHAPNDQLRSELMPVNDRFDI 249
Query: 165 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 224
LM+A++ Y + +++ EY++LD ND + A QL L++ VNLIP+NPI
Sbjct: 250 SDLMDAIRYYTDKTHRRVSFEYVLLDDKNDTPELAAQLASLVKGMLCHVNLIPWNPIPGT 309
Query: 225 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
R S ++V++FQ++++ + I TVR + G +I+ ACGQL
Sbjct: 310 PLTR-SHRERVTAFQRVVQAA-GISCTVRVERGVEIAAACGQL 350
>gi|322831763|ref|YP_004211790.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602]
gi|321166964|gb|ADW72663.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602]
Length = 399
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PDGDRATLCVSSQVGCALECTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVAGTRP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P R + ++ + A++ Y S Q ++ IEY+MLD +ND
Sbjct: 243 ALAISLHAPNDAIRDEIVPINRKYNIDTFLAAVERYISKSNANQGRVTIEYVMLDHINDG 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L + L+ +NLIP+NP R SS+ ++ F K+L Y VRK
Sbjct: 303 TEHAHELAERLKNTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-DYGFTVIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 361 RGDDIDAACGQLAGDVIDR 379
>gi|331269682|ref|YP_004396174.1| radical SAM family protein [Clostridium botulinum BKT015925]
gi|329126232|gb|AEB76177.1| radical SAM enzyme, Cfr family [Clostridium botulinum BKT015925]
Length = 343
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 159/270 (58%), Gaps = 19/270 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G +E+V+MRY +++C+S+Q+GC+MGC FCA+ G NL+
Sbjct: 85 KDGNIIESVVMRYKHG--------------NSICVSTQIGCRMGCKFCASTVDGVVRNLT 130
Query: 64 SGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVS 120
SGEI Q++ A + I NVV MG GEPL+NY +++ ++++ ++ + IT+S
Sbjct: 131 SGEIAAQILKAQQEIGERISNVVLMGSGEPLDNYDNVLKFIKLINDDNALKIGQRHITLS 190
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
T GIV I + + + LA+SLHAP D+R +MP A + + +L++A K Y K + +
Sbjct: 191 TCGIVPKIKELADEKLQITLAISLHAPNDDIRKSMMPVANKYNINELLDACKYYSKITNR 250
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
+I EY +++G+ND ++A +L L+ +NLIP N I R+ + D + F+
Sbjct: 251 RITFEYALVNGINDSAKNAEELFNQLKGILCHINLIPVNEIKENDYKRSGAKD-IEEFKN 309
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
IL Y I TT+R++MG DI+GACGQL N
Sbjct: 310 IL-NKYGIETTIRREMGSDINGACGQLRRN 338
>gi|315646180|ref|ZP_07899300.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
vortex V453]
gi|315278379|gb|EFU41695.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
vortex V453]
Length = 346
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 154/265 (58%), Gaps = 22/265 (8%)
Query: 9 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 68
+E VIM+++ +++C+++QVGC++GC FCA+ G K NL+SGEIV
Sbjct: 90 IETVIMKHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLTSGEIV 135
Query: 69 EQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTV 122
Q+V A ++ + ++V MG GEP NY A ++ +R M + + ITVST
Sbjct: 136 AQVVQAQKILDKTGERVSSIVIMGSGEPFENYEATMKFLRTMIHEKGLNIGQRHITVSTS 195
Query: 123 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 182
GIV I KF + +NLA+S+HAP +R ++MP R FP + ++ +L+ YQ + ++I
Sbjct: 196 GIVPNIYKFTEENTQINLAISIHAPNDKLRSKLMPVNRRFPFDDVIESLRHYQAKTGRRI 255
Query: 183 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 242
EY ++ GVND+ +HA +L +++ VNLIP N + RTS +D + FQ+ L
Sbjct: 256 TFEYALIGGVNDQVEHAEELADVIKDMNCFVNLIPVNHVPERKYVRTSRND-IFKFQRAL 314
Query: 243 RGSYNIRTTVRKQMGQDISGACGQL 267
+ T+R++ G DI+ ACGQL
Sbjct: 315 -ADKGVNVTIRREQGHDIAAACGQL 338
>gi|209694315|ref|YP_002262243.1| ribosomal RNA large subunit methyltransferase N [Aliivibrio
salmonicida LFI1238]
gi|254807148|sp|B6EGY4.1|RLMN_ALISL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|208008266|emb|CAQ78411.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
Length = 383
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P G R+TLC+SSQVGC + C FC+T GF NL EIV Q+ A+R
Sbjct: 99 PDGDRATLCVSSQVGCALACTFCSTAQQGFNRNLKVSEIVGQIWRAAREIGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ ++ IM L F +S +R+TVST G+V + + + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLMPSLDIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGKV-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +IMP + +E + ++EY +S + ++ +EY++LD +ND+
Sbjct: 218 ALAISLHAPTDKLRSEIMPINDRWNIEAFLACVREYIASSNANRGRVTVEYVLLDHINDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HA QL +LL+ +NLIPFNP S ++ S+ ++ F K L Y+ TVR+
Sbjct: 278 MDHARQLAELLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFMKTLM-EYDFTVTVRRT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|160871646|ref|ZP_02061778.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
gi|159120445|gb|EDP45783.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
Length = 372
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 158/257 (61%), Gaps = 14/257 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R TLC+SSQVGC + C+FC+T GF NL+ EI+ Q+ A R
Sbjct: 99 PERGRGTLCVSSQVGCALNCSFCSTAQQGFNRNLTVAEIIGQVWLAVRCLSRDSLRHDHT 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ N+V MGMGEPL N+ ++V+A+ +M + S +R+T+ST G+V A+ + S +
Sbjct: 159 VSNIVMMGMGEPLLNFDSVVKAMNLMMDDFGYGFSKRRVTLSTSGVVPALRRL-SKASEV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQ 197
+LA+SLHAP ++R +++P + +PL +L+ + Y + ++++ +EY+ML+G+ND+ +
Sbjct: 218 SLAISLHAPNDELRDRLVPINKKYPLSELLEVCRNYFRSEHRRRVTMEYVMLEGINDQPE 277
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL K+LE V +NLIPFNP +++R SS + F+ IL + + T RK G
Sbjct: 278 HARQLIKILEGIPVKINLIPFNPF-PFARYRRSSQITIERFKSILVKA-GLNTITRKTRG 335
Query: 258 QDISGACGQLVVNLPDK 274
+DI ACGQLV + D+
Sbjct: 336 EDIDAACGQLVGYVHDR 352
>gi|354582480|ref|ZP_09001382.1| radical SAM enzyme, Cfr family [Paenibacillus lactis 154]
gi|353199879|gb|EHB65341.1| radical SAM enzyme, Cfr family [Paenibacillus lactis 154]
Length = 346
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 156/267 (58%), Gaps = 26/267 (9%)
Query: 9 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 68
+E VIM+++ +++C+++QVGC++GC FCA+ G K NL+SGEIV
Sbjct: 90 IETVIMKHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLTSGEIV 135
Query: 69 EQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVS 120
Q+V A ++ + ++V MG GEP NY A ++ +R M GL + + ITVS
Sbjct: 136 AQVVQAQKILDKTGERVSSIVIMGSGEPFENYDATMKFLRTMIHEKGL--NIGQRHITVS 193
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
T GIV I KF + +NLA+S+HAP +R ++MP R FP + ++ AL+ YQ + +
Sbjct: 194 TSGIVPNIYKFAEEDTQINLAISIHAPNDKLRSKLMPVNRRFPFDDVIEALRFYQAKTGR 253
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
+I EY ++ GVND+ +HA +L +++ VNLIP N + RTS +D + FQ+
Sbjct: 254 RITFEYALIGGVNDQVEHAEELADVIKDMNCFVNLIPVNHVPERKYVRTSRND-IFKFQR 312
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQL 267
L + T+R++ G DI+ ACGQL
Sbjct: 313 AL-ADKGVNVTIRREQGHDIAAACGQL 338
>gi|94311047|ref|YP_584257.1| Radical SAM enzyme, Cfr family [Cupriavidus metallidurans CH34]
gi|123260051|sp|Q1LLI8.1|RLMN_RALME RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|93354899|gb|ABF08988.1| Radical SAM enzyme, Cfr family [Cupriavidus metallidurans CH34]
Length = 384
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/260 (42%), Positives = 155/260 (59%), Gaps = 17/260 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-----SRLSN---- 79
P R TLC+SSQ GC + C FC+TG GF NLS+GEI+ QL A ++L
Sbjct: 98 PEDTRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMRAQLGRGPKD 157
Query: 80 ---IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDL 135
I NVV MGMGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ DL
Sbjct: 158 ERVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDL 217
Query: 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVND 194
P + LAVSLHA +R ++P R +PL +LM A + Y + + + I EY MLDGVND
Sbjct: 218 P-VALAVSLHASNDALRDVLVPLNRKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVND 276
Query: 195 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 254
+HA +L KL+ NLIPFNP S + S+++++ F ++L + I TT+RK
Sbjct: 277 GVEHARELLKLVADVPCKFNLIPFNPFPE-SGLKRSNNEQIRRFAQVLMDA-GIVTTIRK 334
Query: 255 QMGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 335 TRGDDIDAACGQLAGEVMDR 354
>gi|260771398|ref|ZP_05880323.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii
CIP 102972]
gi|375131805|ref|YP_004993905.1| Fe-S-cluster redox enzyme [Vibrio furnissii NCTC 11218]
gi|260613524|gb|EEX38718.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii
CIP 102972]
gi|315180979|gb|ADT87893.1| predicted Fe-S-cluster redox enzyme [Vibrio furnissii NCTC 11218]
Length = 373
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R
Sbjct: 99 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +IMP + ++ + +++ Y +S + K+ +EY++LD VND
Sbjct: 218 ALAISLHAPNDTLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDG 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L +L++ +NLIPFNP S ++ S+ ++ FQK L Y+ TVRK
Sbjct: 278 TEHAHELAQLMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYDHTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|209521129|ref|ZP_03269857.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160]
gi|209498439|gb|EDZ98566.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160]
Length = 383
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 161/296 (54%), Gaps = 39/296 (13%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+D NG VE V + P R TLC+SSQ GC + C FC+TG GF
Sbjct: 86 IDVGNGNAVETVYI--------------PEETRGTLCVSSQAGCAVNCRFCSTGKQGFSR 131
Query: 61 NLSSGEIVEQL------VHASRLSN--------------IRNVVFMGMGEPLNNYAALVE 100
NL++GEI+ QL + ASR + NVV MGMGEPL NY A+V
Sbjct: 132 NLTTGEIIGQLRMAEFALRASRGDAGGRAMGGDGKGERVVTNVVMMGMGEPLLNYDAVVP 191
Query: 101 AVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 159
A+R+M + +S +R+T+ST G+V +++ +DLP + LAVSLHAP +R +++P
Sbjct: 192 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLP-VALAVSLHAPNDALRDELVPLN 250
Query: 160 RAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 218
+ +PL +LM A + Y K + + I EY MLDGVND E HA QL + NLIPF
Sbjct: 251 KKYPLRELMAACERYLKVAPRDFITFEYCMLDGVNDSEAHARQLLAVTRDVPCKFNLIPF 310
Query: 219 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
NP R S +++ F ++L + + TTVRK G DI ACGQL + D+
Sbjct: 311 NPFPESGLIR-SKQEQIKRFAQVLIDA-GVVTTVRKTRGDDIDAACGQLAGAVKDR 364
>gi|29376559|ref|NP_815713.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis V583]
gi|227520169|ref|ZP_03950218.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104]
gi|227555397|ref|ZP_03985444.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22]
gi|229549611|ref|ZP_04438336.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200]
gi|255972309|ref|ZP_05422895.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255975469|ref|ZP_05426055.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256956502|ref|ZP_05560673.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256961519|ref|ZP_05565690.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256962655|ref|ZP_05566826.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257079424|ref|ZP_05573785.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1]
gi|257082189|ref|ZP_05576550.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257090325|ref|ZP_05584686.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257416428|ref|ZP_05593422.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257419673|ref|ZP_05596667.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|293382216|ref|ZP_06628158.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712]
gi|293388635|ref|ZP_06633131.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613]
gi|294780328|ref|ZP_06745697.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1]
gi|300860541|ref|ZP_07106628.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD
Ef11]
gi|307270284|ref|ZP_07551592.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248]
gi|307277716|ref|ZP_07558802.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860]
gi|307287862|ref|ZP_07567895.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109]
gi|312900861|ref|ZP_07760155.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470]
gi|312902828|ref|ZP_07762032.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
gi|312908292|ref|ZP_07767256.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512]
gi|312951214|ref|ZP_07770116.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102]
gi|384513619|ref|YP_005708712.1| cfr family radical SAM enzyme [Enterococcus faecalis OG1RF]
gi|397700280|ref|YP_006538068.1| radical SAM superfamily protein [Enterococcus faecalis D32]
gi|422690387|ref|ZP_16748444.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0630]
gi|422692673|ref|ZP_16750688.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0031]
gi|422698247|ref|ZP_16756164.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1346]
gi|422699915|ref|ZP_16757774.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1342]
gi|422703829|ref|ZP_16761646.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1302]
gi|422711497|ref|ZP_16768426.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0027]
gi|422712438|ref|ZP_16769206.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309A]
gi|422716518|ref|ZP_16773221.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309B]
gi|422721720|ref|ZP_16778303.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0017]
gi|422725572|ref|ZP_16782031.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0312]
gi|422730261|ref|ZP_16786654.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0012]
gi|422735692|ref|ZP_16791958.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1341]
gi|422741919|ref|ZP_16795941.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2141]
gi|422870146|ref|ZP_16916644.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TX1467]
gi|424678319|ref|ZP_18115159.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV103]
gi|424682177|ref|ZP_18118954.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV116]
gi|424685441|ref|ZP_18122139.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV129]
gi|424688165|ref|ZP_18124781.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV25]
gi|424691070|ref|ZP_18127597.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV31]
gi|424694529|ref|ZP_18130927.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV37]
gi|424696447|ref|ZP_18132796.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV41]
gi|424702048|ref|ZP_18138211.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV62]
gi|424704270|ref|ZP_18140372.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV63]
gi|424712736|ref|ZP_18144905.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV65]
gi|424718764|ref|ZP_18147993.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis ERV68]
gi|424722240|ref|ZP_18151304.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV72]
gi|424722985|ref|ZP_18152005.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV73]
gi|424728331|ref|ZP_18156938.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV81]
gi|424740535|ref|ZP_18168917.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV85]
gi|424749892|ref|ZP_18177969.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV93]
gi|424759355|ref|ZP_18187021.1| 23S rRNA methyltransferase [Enterococcus faecalis R508]
gi|430360809|ref|ZP_19426467.1| Fe-S-cluster redox enzyme [Enterococcus faecalis OG1X]
gi|430367269|ref|ZP_19427832.1| Fe-S-cluster redox enzyme [Enterococcus faecalis M7]
gi|81585123|sp|Q833B6.1|RLMN_ENTFA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|29344023|gb|AAO81783.1| conserved hypothetical protein TIGR00048 [Enterococcus faecalis
V583]
gi|227072382|gb|EEI10345.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104]
gi|227175440|gb|EEI56412.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22]
gi|229305276|gb|EEN71272.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200]
gi|255963327|gb|EET95803.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255968341|gb|EET98963.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256946998|gb|EEU63630.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256952015|gb|EEU68647.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256953151|gb|EEU69783.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|256987454|gb|EEU74756.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1]
gi|256990219|gb|EEU77521.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256999137|gb|EEU85657.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257158256|gb|EEU88216.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257161501|gb|EEU91461.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|291080400|gb|EFE17764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712]
gi|291082010|gb|EFE18973.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613]
gi|294452592|gb|EFG21025.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1]
gi|300849580|gb|EFK77330.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD
Ef11]
gi|306501007|gb|EFM70314.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109]
gi|306505595|gb|EFM74779.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860]
gi|306513338|gb|EFM81962.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248]
gi|310625706|gb|EFQ08989.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512]
gi|310630748|gb|EFQ14031.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102]
gi|310633882|gb|EFQ17165.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
gi|311291960|gb|EFQ70516.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470]
gi|315031044|gb|EFT42976.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0017]
gi|315034600|gb|EFT46532.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0027]
gi|315143477|gb|EFT87493.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2141]
gi|315149242|gb|EFT93258.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0012]
gi|315152618|gb|EFT96634.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0031]
gi|315159454|gb|EFU03471.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0312]
gi|315164747|gb|EFU08764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1302]
gi|315167578|gb|EFU11595.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1341]
gi|315171638|gb|EFU15655.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1342]
gi|315173222|gb|EFU17239.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1346]
gi|315575041|gb|EFU87232.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309B]
gi|315576758|gb|EFU88949.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0630]
gi|315582467|gb|EFU94658.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309A]
gi|327535508|gb|AEA94342.1| cfr family radical SAM enzyme [Enterococcus faecalis OG1RF]
gi|329568816|gb|EGG50616.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TX1467]
gi|397336919|gb|AFO44591.1| radical SAM superfamily protein [Enterococcus faecalis D32]
gi|402349548|gb|EJU84492.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV116]
gi|402351647|gb|EJU86527.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV103]
gi|402358791|gb|EJU93451.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV129]
gi|402361557|gb|EJU96107.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV25]
gi|402362914|gb|EJU97426.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV31]
gi|402370167|gb|EJV04403.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV62]
gi|402370459|gb|EJV04666.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV37]
gi|402377833|gb|EJV11723.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV41]
gi|402379734|gb|EJV13524.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV65]
gi|402380305|gb|EJV14065.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis ERV68]
gi|402382359|gb|EJV16026.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV63]
gi|402389425|gb|EJV22821.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV72]
gi|402394135|gb|EJV27330.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV81]
gi|402400392|gb|EJV33223.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV73]
gi|402401956|gb|EJV34695.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV85]
gi|402404813|gb|EJV37426.1| 23S rRNA methyltransferase [Enterococcus faecalis R508]
gi|402407461|gb|EJV39991.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV93]
gi|429512746|gb|ELA02344.1| Fe-S-cluster redox enzyme [Enterococcus faecalis OG1X]
gi|429516742|gb|ELA06221.1| Fe-S-cluster redox enzyme [Enterococcus faecalis M7]
Length = 357
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 158/275 (57%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + L ++C+++QVGC +GC FCA+G + + +L++
Sbjct: 87 DKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTA 132
Query: 65 GEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEIV Q++ + R +VV MG+GEP +NYA ++ +R + GL +
Sbjct: 133 GEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTINDDKGLA--IGA 190
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+EKLM A+ EY
Sbjct: 191 RHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMAAIDEY 250
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + +++ EYIML VND +HA QL LL + + VNLIP+NP+ Q+ SS
Sbjct: 251 IEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSK 310
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ V F +L+ + I +RK+ G DI ACGQL
Sbjct: 311 EAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|308071465|ref|YP_003873070.1| hypothetical protein PPE_04773 [Paenibacillus polymyxa E681]
gi|305860744|gb|ADM72532.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 365
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/274 (36%), Positives = 160/274 (58%), Gaps = 25/274 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
Q+G +E V+MR+ L ++C+++QVGC +GC+FCA+G + +LS
Sbjct: 86 QDGNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKKSRDLS 131
Query: 64 SGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPK 115
SGEIVEQ++ + +VV MG+GEP +N+ L + +R++ + P+
Sbjct: 132 SGEIVEQIMKVQLYLDQERPGDQVSHVVVMGIGEPFDNFVNLSDFIRVIKDHKGLAIGPR 191
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
ITVST G+ I +F +NLA+SLHAP ++R +IM RA P+EKLM A+ Y
Sbjct: 192 HITVSTSGLADKIIEFADSDLHVNLAISLHAPNNEIRTRIMKINRAIPIEKLMQAIDYYL 251
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDD 233
+ ++I +EYI+L VND ++HA +L +L+ + + VNLIP+NP+ SQ++ S +
Sbjct: 252 DKTNRRITLEYILLKDVNDGKEHALELAELVGHRRNLANVNLIPYNPVDEHSQYQRSESE 311
Query: 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ F +L+ I +VR + G DI ACGQL
Sbjct: 312 SITGFYDVLKKQ-GISCSVRLEHGVDIDAACGQL 344
>gi|422013650|ref|ZP_16360269.1| ribosomal RNA large subunit methyltransferase N [Providencia
burhodogranariea DSM 19968]
gi|414102688|gb|EKT64279.1| ribosomal RNA large subunit methyltransferase N [Providencia
burhodogranariea DSM 19968]
Length = 393
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 119 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRP 178
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 179 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 237
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP DVR +I+P + + +E +++++ Y S ++ +EY+MLD +ND
Sbjct: 238 ALAISLHAPTDDVRDEIVPINKKYNIETFLSSVRRYLSKSNANSGRVTVEYVMLDHINDS 297
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP + + SS+ ++ F K+L Y T VRK
Sbjct: 298 IEQAHQLAECLKDTPSKINLIPWNPFPG-APYNRSSNSRIDRFSKVLM-EYGFTTIVRKT 355
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 356 RGDDIDAACGQLAGDVIDR 374
>gi|257087248|ref|ZP_05581609.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|422724088|ref|ZP_16780578.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2137]
gi|424672515|ref|ZP_18109474.1| 23S rRNA methyltransferase [Enterococcus faecalis 599]
gi|256995278|gb|EEU82580.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|315026051|gb|EFT37983.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2137]
gi|402355552|gb|EJU90324.1| 23S rRNA methyltransferase [Enterococcus faecalis 599]
Length = 357
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 158/275 (57%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + L ++C+++QVGC +GC FCA+G + + +L++
Sbjct: 87 DKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTA 132
Query: 65 GEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEIV Q++ + R +VV MG+GEP +NYA ++ +R + GL +
Sbjct: 133 GEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTINDDKGLA--IGA 190
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+EKLM A+ EY
Sbjct: 191 RHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMAAIDEY 250
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + +++ EYIML VND +HA QL LL + + VNLIP+NP+ Q+ SS
Sbjct: 251 IQKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSK 310
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ V F +L+ + I +RK+ G DI ACGQL
Sbjct: 311 EAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|145636367|ref|ZP_01792036.1| hypothetical protein CGSHiHH_07816 [Haemophilus influenzae PittHH]
gi|148825353|ref|YP_001290106.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae PittEE]
gi|145270532|gb|EDK10466.1| hypothetical protein CGSHiHH_07816 [Haemophilus influenzae PittHH]
gi|148715513|gb|ABQ97723.1| hypothetical protein CGSHiEE_01185 [Haemophilus influenzae PittEE]
Length = 383
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 108 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 167
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 168 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 226
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 227 ALAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDG 286
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ ++ FQK L Y+ +RK
Sbjct: 287 VEHAHQLADVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYDFTVIIRKT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 345 RGDDIDAACGQLAGDVIDR 363
>gi|338731523|ref|YP_004660915.1| 23S rRNA m(2)A-2503 methyltransferase [Thermotoga thermarum DSM
5069]
gi|335365874|gb|AEH51819.1| 23S rRNA m(2)A-2503 methyltransferase [Thermotoga thermarum DSM
5069]
Length = 343
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 152/239 (63%), Gaps = 8/239 (3%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGEP 91
+T CIS+QVGC + C+FCATG GF NL EIV Q+ + A IRNVV+MGMGEP
Sbjct: 100 ATACISTQVGCPIRCSFCATGQSGFVRNLEVDEIVSQILAIEADSRQKIRNVVYMGMGEP 159
Query: 92 LNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 150
L NY +V++VRI+ + + +RIT+STVGI I K + +NLA+SLHA +
Sbjct: 160 LLNYDNVVKSVRILNHKKMKNIGIRRITISTVGIPEKIIKLGQEGLDINLAISLHASSNE 219
Query: 151 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE--T 208
R QI+P A + +E++++A K++Q+N+ +++ IEYI++ ND ++ A +L K+L+
Sbjct: 220 KRMQIIPLASKYAIEEILDAAKQFQQNTDRRVTIEYILIKEFNDYDEDARRLAKILKEMK 279
Query: 209 FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+V VNLIP NP ++ S K++ F++IL S I VR++ G DI ACGQL
Sbjct: 280 MKVFVNLIPVNP--ALPGLERPSIWKINRFKEILVES-GIEAEVRREKGVDIEAACGQL 335
>gi|258406363|ref|YP_003199105.1| ribosomal RNA large subunit methyltransferase N [Desulfohalobium
retbaense DSM 5692]
gi|257798590|gb|ACV69527.1| radical SAM enzyme, Cfr family [Desulfohalobium retbaense DSM 5692]
Length = 359
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 149/249 (59%), Gaps = 14/249 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------SNIR 81
PGG T C+S+QVGC +GC FC+TG MG NLS+ EI Q++ A +R
Sbjct: 97 PGGEHFTQCLSTQVGCNLGCTFCSTGQMGLTRNLSAAEIAGQVIVARNHLWQTGTGMRLR 156
Query: 82 NVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKF-HSDLPGLN 139
N+VFMGMGEPL N+ + A+ R++ SP+R+TVSTVG+ ++ HS +
Sbjct: 157 NLVFMGMGEPLLNWENVDNALDRLIHASAMNFSPRRVTVSTVGVPGTLDALGHSH--KAS 214
Query: 140 LAVSLHAPVQDVRCQIMP-AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHAP Q++R +IMP AAR PL L+ L+ Y +Q++ IEY++L GVND
Sbjct: 215 LAVSLHAPNQELREKIMPRAARMLPLPDLLARLRSYPMAPRQRVTIEYVLLGGVNDSLDQ 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A QL + L + VNLI FNP + + ++V +F+ +LR + T+RK GQ
Sbjct: 275 ARQLVRCLNGIRCKVNLIAFNPCPGLP-YSAPETEQVLAFETLLR-DKGLTATLRKSKGQ 332
Query: 259 DISGACGQL 267
DIS ACGQL
Sbjct: 333 DISAACGQL 341
>gi|384256879|ref|YP_005400813.1| ribosomal RNA large subunit methyltransferase N [Rahnella aquatilis
HX2]
gi|380752855|gb|AFE57246.1| ribosomal RNA large subunit methyltransferase N [Rahnella aquatilis
HX2]
Length = 389
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PDGDRATLCVSSQVGCALECTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVAGTRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P R + ++ + A++ Y S Q ++ IEY+MLD +ND
Sbjct: 233 ALAISLHAPNDAIRDEIVPINRKYNIDTFLAAVERYISKSNANQGRVTIEYVMLDHINDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L + L+ +NLIP+NP R SS+ ++ F K+L Y VRK
Sbjct: 293 TEHAHELAERLKNTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-DYGFTVIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|257422170|ref|ZP_05599160.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|422705360|ref|ZP_16763162.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0043]
gi|257163994|gb|EEU93954.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|315157206|gb|EFU01223.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0043]
Length = 357
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 158/275 (57%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + L ++C+++QVGC +GC FCA+G + + +L++
Sbjct: 87 DKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTA 132
Query: 65 GEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEIV Q++ + R +VV MG+GEP +NYA ++ +R + GL +
Sbjct: 133 GEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTINDDKGLA--IGA 190
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+EKLM A+ EY
Sbjct: 191 RHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMAAIDEY 250
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + +++ EYIML VND +HA QL LL + + VNLIP+NP+ Q+ SS
Sbjct: 251 IEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSK 310
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ V F +L+ + I +RK+ G DI ACGQL
Sbjct: 311 EAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|387133113|ref|YP_006299085.1| 2-vinyl bacteriochlorophyllide hydratase [Prevotella intermedia 17]
gi|386375961|gb|AFJ09378.1| 23S rRNA m2A2503 methyltransferase [Prevotella intermedia 17]
Length = 346
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 152/264 (57%), Gaps = 18/264 (6%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G FVE+V + P R+TLC+SSQVGCKM C FC TG GF+ NLS+
Sbjct: 89 DGKFVESVYI--------------PDEDRATLCVSSQVGCKMNCLFCQTGKQGFEGNLSA 134
Query: 65 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVG 123
+I+ Q+ + N+VFMG GEP++NY ++ +IMT + SPKRITVS++G
Sbjct: 135 TDILNQIYSLPEREKLTNIVFMGQGEPMDNYENVLRTTQIMTADYGYAWSPKRITVSSIG 194
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
+ + +F + ++A+S+H+P+ R +IMPA R + ++ L+ Y + Q+++
Sbjct: 195 VKTKLKRFLEE-SDCHVAISMHSPIPAERAEIMPAERGMSIADIVELLRNYDFSHQRRLS 253
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
EYI+ GVND E+HA ++ KLL+ +NLI F+ I +V D K+ F+ L
Sbjct: 254 FEYIVFKGVNDSERHAKEIIKLLKGLDCRINLIRFHAIPNVP-LHGVDDKKMEEFRNYL- 311
Query: 244 GSYNIRTTVRKQMGQDISGACGQL 267
+ + TT+R GQDI ACG L
Sbjct: 312 TQHGVFTTIRASRGQDIFAACGLL 335
>gi|288922416|ref|ZP_06416604.1| radical SAM enzyme, Cfr family [Frankia sp. EUN1f]
gi|288346219|gb|EFC80560.1| radical SAM enzyme, Cfr family [Frankia sp. EUN1f]
Length = 380
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 158/283 (55%), Gaps = 29/283 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY R+T+C+SSQ GC M C FCATG G NLS+
Sbjct: 109 DGAKIESVLMRYPQ--------------RTTVCVSSQAGCGMACPFCATGQGGLTRNLST 154
Query: 65 GEIVEQLVHASR----------LSNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQ 111
EIVEQ+V A+R + NVVFMGMGEPL NY AL+ A+R + T
Sbjct: 155 AEIVEQVVDAARTMTRGGLPGGPGRLSNVVFMGMGEPLANYNALLAALRRLIEPTPDGLG 214
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + +TVSTVG+V I + + + LA+SLHAP ++R +++P +P+ +++ A
Sbjct: 215 LSARSLTVSTVGLVPGIRRLAGEGLPVTLALSLHAPDDELRNELVPINTRWPVAEVLEAA 274
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
+Y + + +++ IEY ++DGVND + A LG LL VNLIP NP S ++ S+
Sbjct: 275 WDYARITGRRVSIEYALIDGVNDSPERADALGALLAGQLAHVNLIPLNPTDG-SSWQASA 333
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
F LR + + TVR G++I+ ACGQL P +
Sbjct: 334 PRGQRVFVDRLR-ARGVTATVRDTRGREIAAACGQLAAEPPAR 375
>gi|375109391|ref|ZP_09755639.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
jeotgali KCTC 22429]
gi|374570481|gb|EHR41616.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
jeotgali KCTC 22429]
Length = 375
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 154/258 (59%), Gaps = 15/258 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R TLC+SSQVGC + C+FC+T GF NLS EI+ Q+ S++
Sbjct: 101 PEKDRRTLCVSSQVGCALDCSFCSTAQQGFNRNLSVSEIIGQVWRVSQIIGSFGDTGEKP 160
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N +V A+ + M F +S +R+T+ST G+V A++ + +
Sbjct: 161 VTNVVMMGMGEPLLNLNNVVPAMELMMEDFGFGLSKRRVTLSTSGVVPALDLLREKI-DV 219
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEE 196
LA+SLHAP +R +++P + +P+E+ + A + Y ++S+ K+ +EY+ML+G+ND
Sbjct: 220 ALAISLHAPNNALRDELVPVNKKYPMEEFLAASRRYIEHSKANDKVTVEYVMLEGINDST 279
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
AH+L K L+ +NLIPFNP S ++ SS+ ++ F K+L+ Y VRK
Sbjct: 280 DQAHELAKALKDTPSKINLIPFNPYPG-SPYKRSSNSRIDRFNKVLQ-DYGFTVMVRKTR 337
Query: 257 GQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 338 GDDIDAACGQLVGDVIDR 355
>gi|300087157|ref|YP_003757679.1| Cfr family radical SAM protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299526890|gb|ADJ25358.1| radical SAM enzyme, Cfr family [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 356
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/272 (40%), Positives = 160/272 (58%), Gaps = 22/272 (8%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+ M + S GK R T+C+SSQVGC +GC +CATG GF NLS
Sbjct: 89 DGNTIESTAMEFGGSAGKI---------RRTVCVSSQVGCMIGCPYCATGMNGFHRNLSP 139
Query: 65 GEIVEQLVH----ASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPK 115
GE++EQ+++ R+ +++ NVVFMGMGEPL NY +V AV ++ G+ F +
Sbjct: 140 GEMIEQVLYYRGETGRVGRNSLTNVVFMGMGEPLLNYDNVVTAVSLLNSHHGMGF--GAR 197
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
+IT+ST GIV I + + LAVS+ + ++R ++P R +PL L+ A +EY
Sbjct: 198 QITISTSGIVPGILRLAREDLYCQLAVSIQSATDELRNLLVPVNRKYPLAHLIEACREYS 257
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235
+ +++K+FIEY++ +GVND Q A L KLLE +NLI N G + FR +S D V
Sbjct: 258 ELTRRKVFIEYVLFEGVNDSIQDAEGLAKLLEPLDCSINLIIVNNSG-IGTFRPTSYDTV 316
Query: 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+FQ++L S RT +R G DI CGQL
Sbjct: 317 VAFQRLLV-SKGFRTMLRLSRGTDIEAGCGQL 347
>gi|225164328|ref|ZP_03726595.1| radical SAM enzyme, Cfr family [Diplosphaera colitermitum TAV2]
gi|224801062|gb|EEG19391.1| radical SAM enzyme, Cfr family [Diplosphaera colitermitum TAV2]
Length = 375
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 158/284 (55%), Gaps = 29/284 (10%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPG----GPRSTLCISSQVGCKMGCNFCATGTM 56
++ + VE VI+R P+ G R T+CIS+QVGC M C FCA+G
Sbjct: 90 LELGDASLVETVIIR----------APQDGVGLEHSRKTICISTQVGCAMACAFCASGLA 139
Query: 57 GFKSNLSSGEIVEQLVHA------------SRLSNIRNVVFMGMGEPLNNYAALVEAVRI 104
G K +L +GEIV QL+H S L++ N+V MGMGEPL NY A+V A+RI
Sbjct: 140 GLKRDLLAGEIVAQLLHVCYREDARTPRARSELASFDNIVVMGMGEPLANYDAIVRALRI 199
Query: 105 MTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 163
+ V +RIT+ST G+V I K + G+ LA+SLH +VR +IMP +AFP
Sbjct: 200 VNAEWGLGVGARRITLSTSGLVPKILKLADEDLGIRLAISLHGATDEVRERIMPVNKAFP 259
Query: 164 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 223
L KL+ A+K + + + + + +E+I+++ VND + A L + VNLIP+N +
Sbjct: 260 LAKLIPAVKTFSEKNGRMVTLEFILIEEVNDTIEQAEALCYIARDLHAHVNLIPYNTVEG 319
Query: 224 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ ++ S + F +LR + + T+R++ G DI ACGQL
Sbjct: 320 L-LWKRPSLTRQERFADVLRAA-RVSVTLRREKGHDIDAACGQL 361
>gi|357410905|ref|YP_004922641.1| radical SAM enzyme, Cfr family [Streptomyces flavogriseus ATCC
33331]
gi|320008274|gb|ADW03124.1| radical SAM enzyme, Cfr family [Streptomyces flavogriseus ATCC
33331]
Length = 368
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 155/280 (55%), Gaps = 29/280 (10%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+G VE+V+MRY R T+CISSQ GC M C FCATG G NLS
Sbjct: 103 HDGTLVESVLMRYPD--------------RVTMCISSQAGCGMNCPFCATGQAGLDRNLS 148
Query: 64 SGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---F 110
+ EIV Q+V R + + N+VFMGMGEPL NY +V A+R +T
Sbjct: 149 TAEIVHQIVDGMRALRDGEVPGGPARLSNIVFMGMGEPLANYKRVVGAIRRLTDPEPDGL 208
Query: 111 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+S + ITVSTVG+V A+ +F + LAVSLHAP ++R ++P + + ++++A
Sbjct: 209 GLSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVREVLDA 268
Query: 171 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTS 230
EY + S ++I IEY ++ +ND+ +LG+LL+ +V VNLIP NP +
Sbjct: 269 AWEYAEKSGRRISIEYALIRDINDQAWRGDRLGRLLKGKRVHVNLIPLNPTPGSKWTASR 328
Query: 231 SDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
+D+ + + I R + + TVR GQ+I GACGQL +
Sbjct: 329 PEDEKAFVEAIAR--HGVPVTVRDTRGQEIDGACGQLAAS 366
>gi|257084807|ref|ZP_05579168.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256992837|gb|EEU80139.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
Length = 357
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 158/275 (57%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + L ++C+++QVGC +GC FCA+G + + +L++
Sbjct: 87 DKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTA 132
Query: 65 GEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEIV Q++ + R +VV MG+GEP +NYA ++ +R + GL +
Sbjct: 133 GEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTINDDKGLA--IGA 190
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+EKLM A+ EY
Sbjct: 191 RHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMAAIDEY 250
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + +++ EYIML VND +HA QL LL + + VNLIP+NP+ Q+ SS
Sbjct: 251 IEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSK 310
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ V F +L+ + I +RK+ G DI ACGQL
Sbjct: 311 EAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|145634639|ref|ZP_01790348.1| hypothetical protein CGSHiAA_05421 [Haemophilus influenzae PittAA]
gi|229844547|ref|ZP_04464687.1| hypothetical protein CGSHi6P18H1_09535 [Haemophilus influenzae
6P18H1]
gi|145268184|gb|EDK08179.1| hypothetical protein CGSHiAA_05421 [Haemophilus influenzae PittAA]
gi|229812796|gb|EEP48485.1| hypothetical protein CGSHi6P18H1_09535 [Haemophilus influenzae
6P18H1]
Length = 383
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 108 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 167
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 168 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 226
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 227 ALAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDG 286
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ ++ FQK L Y+ +RK
Sbjct: 287 VEHAHQLADVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYDFTVIIRKT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 345 RGDDIDAACGQLAGDVIDR 363
>gi|310778596|ref|YP_003966929.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM
2926]
gi|309747919|gb|ADO82581.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM
2926]
Length = 349
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 155/271 (57%), Gaps = 22/271 (8%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G +E V++++ R+TLCISSQVGC + C+FCATG GF NL+
Sbjct: 88 EDGNTIETVLLKHKE--------------RNTLCISSQVGCPVKCSFCATGLDGFVRNLN 133
Query: 64 SGEIVEQLVHASRL------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
EI+ Q+ R NI NVVFMGMGEP+ N +++AV I++ +S +R
Sbjct: 134 VHEILNQVYTVQRRFFKSEGKNITNVVFMGMGEPMLNIENVIKAVDILSDENGMNISKRR 193
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
IT+ST GI+ I K + + LA+SLHA + R ++P R +PLE L L EYQK
Sbjct: 194 ITISTSGIIPGIEKLLQEKIPVELAISLHAITNEKRDALIPINRKYPLEDLYTILNEYQK 253
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
++++I EY+++D +N + A +L + + +F V+NLIP+NP+ + + + +K+
Sbjct: 254 ITKRRITFEYVLIDKLNVTQSDADRLAEFMHSFDHVLNLIPYNPVPG-NDYERPAPEKIK 312
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
F L + T+R + G DI GACGQL
Sbjct: 313 KFYNYLLNERKVNVTLRHEKGSDIDGACGQL 343
>gi|256370982|ref|YP_003108806.1| radical SAM enzyme, Cfr family [Acidimicrobium ferrooxidans DSM
10331]
gi|256007566|gb|ACU53133.1| radical SAM enzyme, Cfr family [Acidimicrobium ferrooxidans DSM
10331]
Length = 353
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/275 (38%), Positives = 155/275 (56%), Gaps = 22/275 (8%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
++ +G VE V+M+ R ++C+SSQ GC MGC FCATG GF
Sbjct: 77 LEAADGALVETVVMQ--------------SARRISVCVSSQAGCAMGCRFCATGQAGFVR 122
Query: 61 NLSSGEIVEQLVHASRLSNIR---NVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRI 117
+L GEIVEQL A R R +VVFMGMGEPL N + +EA+R + F +SP+R+
Sbjct: 123 HLGVGEIVEQLAIAQRSVRPRRLTHVVFMGMGEPLANASVAIEAIRRIRA-DFGISPRRV 181
Query: 118 TVSTVGIVHAINKF-HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
TVSTVGIV I + H+DL G+ LAVSLHA R ++P R + ++ +++A +E+ +
Sbjct: 182 TVSTVGIVPGIRRLAHADL-GVTLAVSLHAANDAARSDLVPMNRRYGIDAVLDAAQEFSE 240
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
+ +++ +E+ ++ GVND ++ A +L VNLIP NP T D V+
Sbjct: 241 LTGRRVTLEWALIAGVNDRDRDATELAGHARRLAAHVNLIPLNPTPGYPMVGTDP-DGVA 299
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 271
F + LR S + TVR G+ I ACGQL ++
Sbjct: 300 RFARRLR-SLGVNVTVRDTRGRSIDAACGQLAADV 333
>gi|311748631|ref|ZP_07722416.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1]
gi|126577157|gb|EAZ81405.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1]
Length = 352
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/246 (40%), Positives = 145/246 (58%), Gaps = 9/246 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN------IRN 82
P R T C+SSQVGC + CNFCAT + NL+ EI +Q+V + + N
Sbjct: 100 PTSKRITACVSSQVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIKEEAEKYFERPLTN 159
Query: 83 VVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
+VFMGMGEPL NYA ++ A+ +I + ++ +RIT+STVG+ I K D NLA
Sbjct: 160 IVFMGMGEPLLNYANVLAAIDKITSPEGLGMAARRITLSTVGVTKMIRKMADDEVKFNLA 219
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
VSLH+ + + R ++MP + P+E+L +LK + K + +K+ EY++ DGVND+E+HA
Sbjct: 220 VSLHSAINETRSRLMPINDSNPVEELGESLKYWYKKTGRKVTYEYVIWDGVNDDERHARA 279
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L K + VN+I +NPI +FR + + V + ++L S + VRK GQDI
Sbjct: 280 LAKFCKLIPSKVNIIQYNPIDE-GEFRQAKQEAVDMYIRVLE-SQGVIAKVRKSRGQDID 337
Query: 262 GACGQL 267
ACGQL
Sbjct: 338 AACGQL 343
>gi|260582543|ref|ZP_05850333.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae NT127]
gi|260094354|gb|EEW78252.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae NT127]
Length = 390
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 115 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 174
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 175 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 233
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 234 ALAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDG 293
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ ++ FQK L Y+ +RK
Sbjct: 294 VEHAHQLADVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYDFTVIIRKT 351
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 352 RGDDIDAACGQLAGDVIDR 370
>gi|430860757|ref|ZP_19478352.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1573]
gi|430551075|gb|ELA90844.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1573]
Length = 355
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 149/253 (58%), Gaps = 11/253 (4%)
Query: 36 LCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGM 88
+C+++QVGC +GC FCA+G + +L++GEIV Q++ + RN VV MG+
Sbjct: 104 VCVTTQVGCNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDERNLGERVSHVVVMGI 163
Query: 89 GEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEP +NY +++ + I+ + + ITVST G+ H I +F ++ +NLA+SLHAP
Sbjct: 164 GEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHAP 223
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
+VR IM R+FP+EKLM A+ EY + + ++I EYIML+ VND +HA QL LL+
Sbjct: 224 NNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLK 283
Query: 208 TFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 265
+ VNLIP+NP+ Q+ S V F +L+ + + +RK+ G DI ACG
Sbjct: 284 DKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKN-GVNCVIRKEHGTDIDAACG 342
Query: 266 QLVVNLPDKISAK 278
QL K AK
Sbjct: 343 QLRSKQMKKTVAK 355
>gi|359430013|ref|ZP_09221029.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp.
NBRC 100985]
gi|358234567|dbj|GAB02568.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp.
NBRC 100985]
Length = 411
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 164/261 (62%), Gaps = 20/261 (7%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSN 79
G R TLCISSQVGC + C+FC+TG GF+ +L+ EI+ QL A+ R
Sbjct: 132 GARKTLCISSQVGCALDCSFCSTGKQGFQRDLTPAEIIGQLWMANYSYMEDVPVAERERT 191
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL NY A++ ++++M + +S +R+T+ST G+V I++ D+ +
Sbjct: 192 VTNVVMMGMGEPLLNYDAVLSSMQLMLDDFAYGMSKRRVTISTSGVVPKIDQLAQDI-DV 250
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVN 193
LA+SLHAP ++R +++P + +PLE+L+ A + Y +++++ + IEYIMLDGVN
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLEQLIAACQRYLAKDGNESARRHVTIEYIMLDGVN 310
Query: 194 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253
D+ +HA QL KLL+ +NLIPFNP R SS +++ +FQK L + + T+R
Sbjct: 311 DQPEHAQQLLKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIIAFQKTLSDAGFV-CTIR 368
Query: 254 KQMGQDISGACGQLVVNLPDK 274
+ G DI ACGQLV + D+
Sbjct: 369 QTRGDDIDAACGQLVGQVADR 389
>gi|167562546|ref|ZP_02355462.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis
EO147]
Length = 378
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 114/264 (43%), Positives = 152/264 (57%), Gaps = 21/264 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS---RLS------- 78
P R TLC+SSQ GC + C FC+TG GF NLS+GEIV QL A R S
Sbjct: 100 PEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGREPGP 159
Query: 79 ------NIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKF 131
I NVV MGMGEPL NY+A+V A+R+M + +S +R+T+ST G+V ++K
Sbjct: 160 NGRADRVITNVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDKL 219
Query: 132 HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLD 190
++LP + LAVSLHAP +R +++P + PL +LM A + Y K + + I EY MLD
Sbjct: 220 GAELP-VALAVSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLD 278
Query: 191 GVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 250
GVND E HA +L L NLIPFNP R S D++ F ++L + + T
Sbjct: 279 GVNDTEAHARELLALTRDVPCKFNLIPFNPFPESGLVR-SKPDQIKRFAQVLIDA-GVVT 336
Query: 251 TVRKQMGQDISGACGQLVVNLPDK 274
T+RK G DI ACGQL + D+
Sbjct: 337 TIRKTRGDDIDAACGQLAGAVKDR 360
>gi|410621688|ref|ZP_11332534.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola pallidula
DSM 14239 = ACAM 615]
gi|410158926|dbj|GAC27908.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola pallidula
DSM 14239 = ACAM 615]
Length = 385
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+TG GF NLS EI+ Q+ +
Sbjct: 110 PETDRATLCVSSQVGCALECTFCSTGQQGFNRNLSVAEIIGQVWRVATFIGLSKDTSQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+RIM F +S +R+T+ST G+V A++ D +
Sbjct: 170 ITNVVMMGMGEPLLNLKNVVPAMRIMLDDFGFGLSKRRVTLSTSGVVPALDML-GDQIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + +P+E+ + +++ Y K +Q K+ +EY+ML+ +ND
Sbjct: 229 ALAISLHAPDNKLRDEIVPVNKKYPIEEFLASVRRYLAKSKANQGKVTVEYVMLNQINDS 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AH+L K+L+ +NLIPFNP + + SS+ ++ F K+L Y +RK
Sbjct: 289 TDQAHELAKVLKETPCKINLIPFNPYPG-TPYTCSSNSRMDRFSKVLM-EYGFTVVIRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 347 RGDDIDAACGQLVGDVVDR 365
>gi|374852470|dbj|BAL55402.1| hypothetical conserved protein [uncultured beta proteobacterium]
Length = 382
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 157/267 (58%), Gaps = 24/267 (8%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA----------SRLS 78
P R TLCIS+Q GC + C FCATG GF NL++GEI+ QL A +RL
Sbjct: 107 PERSRGTLCISTQAGCALECAFCATGKQGFNRNLTTGEILGQLWLANHVLGPAYEHARLD 166
Query: 79 N---------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAI 128
+ + NVV MGMGEPL NY A+V A+++M + +S +R+TVST G+V A+
Sbjct: 167 DGDWTDNGRVVTNVVMMGMGEPLANYDAVVRALKVMLDDFGYGLSRRRVTVSTSGLVPAM 226
Query: 129 NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYI 187
++ ++ P + LAVSLHAP +R +++P + +PL++L+ A + Y S + I EY+
Sbjct: 227 DRLRAECP-VALAVSLHAPNDRLRDELVPINKKYPLKELIAACERYLTASPRDFIMFEYV 285
Query: 188 MLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 247
+LDGVND + A +L L NLIPFNP S FR + ++V +F + L +
Sbjct: 286 LLDGVNDNPRDAQELIALTRGLSCKFNLIPFNPFPG-SPFRRPAPERVRAFAERLMAAGR 344
Query: 248 IRTTVRKQMGQDISGACGQLVVNLPDK 274
+ TT+R+ G D++ ACGQL + D+
Sbjct: 345 L-TTIRRTRGDDVAAACGQLAGQVKDR 370
>gi|345022595|ref|ZP_08786208.1| hypothetical protein OTW25_14956 [Ornithinibacillus scapharcae
TW25]
Length = 355
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 157/273 (57%), Gaps = 25/273 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+MR++ L ++C+++QVGC +GC FCA+G + +L S
Sbjct: 87 DGNLIETVLMRFNYGL--------------SVCVTTQVGCNIGCTFCASGLLRKSRDLDS 132
Query: 65 GEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
GEIVEQ++ + + ++V MG+GEP +N+ LV +R++ ++ +
Sbjct: 133 GEIVEQIMKVQKHLDEQGKDERVSHIVVMGIGEPFDNFTNLVNFIRVVNDEKGLKIGQRH 192
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
ITVST G+ H I +F +NLA+SLHAP ++R IM RAFP+EKLM A+ Y +
Sbjct: 193 ITVSTSGLAHKIYEFADTGLQVNLAISLHAPNDELRTSIMKINRAFPIEKLMKAVDYYLE 252
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDDK 234
S ++I EYIML VND + A QL KLL + + VNLIP+N + +Q++ S
Sbjct: 253 KSNRRITYEYIMLRDVNDHKGEALQLAKLLHKKRHLSYVNLIPYNSVEEHNQYQRSETAV 312
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +F + L+ S I + VR + G DI ACGQL
Sbjct: 313 IQAFHETLK-SKGINSGVRWENGADIDAACGQL 344
>gi|443315063|ref|ZP_21044576.1| 23S rRNA m2A2503 methyltransferase [Leptolyngbya sp. PCC 6406]
gi|442785337|gb|ELR95164.1| 23S rRNA m2A2503 methyltransferase [Leptolyngbya sp. PCC 6406]
Length = 361
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 147/241 (60%), Gaps = 5/241 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFM 86
P R T+C+SSQVGC M C+FCATG GF NL++ EIV+Q+ V + N+VFM
Sbjct: 115 PTAKRLTVCVSSQVGCPMACDFCATGKGGFARNLATHEIVDQVLTVQEDFGQRVSNIVFM 174
Query: 87 GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
GMGEPL N ++V A+R + G +S + IT+STVGI I + + LAVSLHA
Sbjct: 175 GMGEPLLNTDSVVAAIRCLNG-DVGISQRAITLSTVGIPGRIRQLAEQHLQVTLAVSLHA 233
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
Q +R Q++P+ARA+PL L+ ++Y + +++ EYI+L G+ND +HA +L L+
Sbjct: 234 SNQGLREQLIPSARAYPLTALLTECRDYVAVTGRRVSFEYILLAGLNDLPEHAGELADLV 293
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
FQ VNLIP+NPI V ++ SD + F + LR ++ +VR G + ACGQ
Sbjct: 294 GGFQSHVNLIPYNPISEVD-YQRPSDYDIQDFAEALR-ERHVAVSVRYSRGLEKDAACGQ 351
Query: 267 L 267
L
Sbjct: 352 L 352
>gi|441500899|ref|ZP_20983045.1| Ribosomal RNA large subunit methyltransferase N [Fulvivirga
imtechensis AK7]
gi|441435297|gb|ELR68695.1| Ribosomal RNA large subunit methyltransferase N [Fulvivirga
imtechensis AK7]
Length = 348
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 146/248 (58%), Gaps = 13/248 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN------IRN 82
P R T CISSQVGC + CNFCAT + NL+ EI +Q+V S + N
Sbjct: 101 PTDKRITACISSQVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIKEQSEQFFSRPLTN 160
Query: 83 VVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
+VFMGMGEPL NY ++EA+ +T GL +SPKRIT+STVGI I K D N
Sbjct: 161 IVFMGMGEPLLNYGNVIEAIEKITKPEGLG--MSPKRITLSTVGIPKMIKKLADDEVKFN 218
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHA 199
LAVSLH+ + + R ++MP PLE L +ALK + ++ K+ EY++ GVND+E+ A
Sbjct: 219 LAVSLHSGINETRSKVMPINEKNPLEDLADALKYWYHKTKSKVTYEYVVWRGVNDKERDA 278
Query: 200 HQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 259
L K + VNLI +NPI +F+ +S+D ++ + + L + +I VR+ G+D
Sbjct: 279 DALVKFCKIIPSKVNLIEYNPIDE-GEFQQASEDALNMYIQKLEAA-DIVVKVRRSRGKD 336
Query: 260 ISGACGQL 267
I ACGQL
Sbjct: 337 IDAACGQL 344
>gi|425032879|ref|ZP_18437888.1| 23S rRNA methyltransferase [Enterococcus faecium 515]
gi|403011707|gb|EJY24998.1| 23S rRNA methyltransferase [Enterococcus faecium 515]
Length = 355
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 159/284 (55%), Gaps = 25/284 (8%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + L ++C+++QVGC +GC FCA+G + +L++
Sbjct: 87 DKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASGLLKKNRDLTA 132
Query: 65 GEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
GEIV Q++ + RN VV MG+GEP +NY +++ + I+ + +
Sbjct: 133 GEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHIINDAKGLAIGARH 192
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
ITVST G+ H I +F ++ +NLA+SLHAP +VR IM R+FP+EKLM A+ EY +
Sbjct: 193 ITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLE 252
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV--NLIPFNPIGSVSQFRTSSDDK 234
+ ++I EYIML+ VND +HA QL LL+ + + NLIP+NP+ Q+ S
Sbjct: 253 KTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYDNLIPYNPVSEHDQYSRSPKAD 312
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 278
V F +L+ + + +RK+ G DI ACGQL K AK
Sbjct: 313 VLRFYDVLKKN-GVNCVIRKEHGTDIDAACGQLRSKQMKKTVAK 355
>gi|138894695|ref|YP_001125148.1| ribosomal RNA large subunit methyltransferase N [Geobacillus
thermodenitrificans NG80-2]
gi|205829768|sp|A4IM49.1|RLMN_GEOTN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|134266208|gb|ABO66403.1| Radical SAM family enzyme [Geobacillus thermodenitrificans NG80-2]
Length = 364
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 163/273 (59%), Gaps = 22/273 (8%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ +G +E V+MR++ +++C+++QVGC++GC FCA+ G K
Sbjct: 98 FELHDGYSIETVLMRHNYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKR 143
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSP 114
+L +GEIV Q+V + + ++V MG+GEP +NY AL++ +RI+ +
Sbjct: 144 HLEAGEIVAQVVQVQKALDETEERVSSIVVMGIGEPFDNYDALIKFLRIVNHSKGLNIGA 203
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST GI+ I +F + +N A+SLHAP ++R ++MP +A+PL KLM A++ Y
Sbjct: 204 RHITVSTSGIIPKIYQFADEGMQINFAISLHAPTTELRTKLMPINKAYPLPKLMEAVRYY 263
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
+ + +++ EY + GVND+ +HA QL +LL+ + VNLIP N + + RT ++
Sbjct: 264 IEKTGRRVTFEYGLFGGVNDQLEHAEQLAELLKGLKCHVNLIPVNYVPERNYVRTPR-NQ 322
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +F++ L+ + I T+R++ G DI ACGQL
Sbjct: 323 IFAFERALK-KHGINVTIRREHGHDIDAACGQL 354
>gi|186684082|ref|YP_001867278.1| ribosomal RNA large subunit methyltransferase N [Nostoc punctiforme
PCC 73102]
gi|205829792|sp|B2J6D0.1|RLMN_NOSP7 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|186466534|gb|ACC82335.1| radical SAM enzyme, Cfr family [Nostoc punctiforme PCC 73102]
Length = 364
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 154/244 (63%), Gaps = 7/244 (2%)
Query: 28 RPGGPRS--TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNV 83
R GP++ T+C+S+QVGC M C+FCATG G+K NL+ EI++Q+ V + NV
Sbjct: 119 RGEGPKARLTVCVSTQVGCPMACDFCATGKGGYKRNLARHEIIDQVLTVQEDFQQRVSNV 178
Query: 84 VFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
VFMG+GEPL N ++ A++ + + + +TVSTVGI I +F + + LAVS
Sbjct: 179 VFMGLGEPLLNTENVLAALKSLNQ-DIGIGQRSLTVSTVGIRDRIRQFAQNNLQITLAVS 237
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 203
LHAP Q +R +++P+ARA+PLE+L+ +EY + + +++ EY++L GVND +HA +L
Sbjct: 238 LHAPNQALREKLIPSARAYPLEELLAECREYVEITGRRVTFEYVLLAGVNDLPEHALELS 297
Query: 204 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 263
K + FQ VNLIP+NPI V ++ + D++ +F +L+ N +VR G + A
Sbjct: 298 KCMRGFQSHVNLIPYNPIQEVD-YKRPNRDRIEAFVNVLK-QQNTAVSVRYSRGLEADAA 355
Query: 264 CGQL 267
CGQL
Sbjct: 356 CGQL 359
>gi|419693358|ref|ZP_14221349.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9872]
gi|380672777|gb|EIB87925.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9872]
Length = 356
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 165/271 (60%), Gaps = 13/271 (4%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE+V++ GK R R T+C+SSQVGCK GC+FC T G K NLS+
Sbjct: 84 DGLRVESVLLPMKEEKIDAEGK-RISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSA 142
Query: 65 GEIVEQLVHASRLSNI-----RNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 116
GEIV Q++ + +NI N+V+MGMGEPL+N + +AV+I+ GL +SP+R
Sbjct: 143 GEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLA--ISPRR 200
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
T+ST G+ I + G+ LA+SLHA ++R ++MP +A+ + +M+A++E+
Sbjct: 201 QTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPI 260
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
+ ++++ EY+++DG+ND+ +HA +L KLL + VNLI FNP S ++ S +
Sbjct: 261 DQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILFNP-HEGSLYKRPSLENAI 319
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
FQ +L S + T+R+ G DIS ACGQL
Sbjct: 320 KFQDLL-SSKGVTCTIRESKGLDISAACGQL 349
>gi|333908814|ref|YP_004482400.1| ribosomal RNA large subunit methyltransferase N [Marinomonas
posidonica IVIA-Po-181]
gi|333478820|gb|AEF55481.1| Ribosomal RNA large subunit methyltransferase N [Marinomonas
posidonica IVIA-Po-181]
Length = 371
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 156/259 (60%), Gaps = 17/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R+TLC+SSQVGC + C+FC+TG GF NL+ EI+ Q+ A +
Sbjct: 102 PDGDRATLCVSSQVGCSLDCSFCSTGKQGFNRNLTPAEIIGQVWIAIKSFGPMDPNGPRR 161
Query: 80 IRNVVFMGMGEPLNNYAALVEA-VRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ +V+A + +M + +S +R+T+ST G+V I + +
Sbjct: 162 VTNVVMMGMGEPLMNFEPVVDAMILMMHDNAYGLSKRRVTLSTSGVVPKIYELIKRT-DV 220
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEE 196
+LA+SLHAP +R +++P R +P+ +L+ A + Y N ++ I IEY ++ GVND E
Sbjct: 221 SLAISLHAPNNPLRDELVPINRKYPIAELIEACQHYLANLPDKRHITIEYTLMSGVNDNE 280
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS-YNIRTTVRKQ 255
+ AH+L +LL+ + VNLIPFNP S + S+++ FQKIL + Y + TVR
Sbjct: 281 EQAHELVELLKDLECKVNLIPFNPFPH-SGYEKPSNNRTRRFQKILADAGYTV--TVRTT 337
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV + DK
Sbjct: 338 RGDDIDAACGQLVGDFHDK 356
>gi|386265240|ref|YP_005828732.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus
influenzae R2846]
gi|205829858|sp|A5UAC2.2|RLMN_HAEIE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|309972476|gb|ADO95677.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus
influenzae R2846]
Length = 390
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 115 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 174
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 175 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 233
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 234 ALAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDG 293
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ ++ FQK L Y+ +RK
Sbjct: 294 VEHAHQLADVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYDFTVIIRKT 351
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 352 RGDDIDAACGQLAGDVIDR 370
>gi|221632343|ref|YP_002521564.1| radical SAM enzyme, Cfr family [Thermomicrobium roseum DSM 5159]
gi|221156232|gb|ACM05359.1| radical SAM enzyme, Cfr family [Thermomicrobium roseum DSM 5159]
Length = 379
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/270 (37%), Positives = 159/270 (58%), Gaps = 21/270 (7%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++ FVE V+M Y R+T+C+S Q+GC +GC+FCATG G NLS
Sbjct: 110 RDDHFVETVVMFYPD--------------RTTVCVSCQIGCAIGCSFCATGLSGLIRNLS 155
Query: 64 SGEIVEQLVHASRLSN-----IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRI 117
+GE+V Q+VHA+RL+ I N+V MGMGEP +NY A++ V I+ + + I
Sbjct: 156 AGEMVSQVVHAARLARERERRISNIVVMGMGEPFHNYDAVMRFVAIVNDRQGLGIGARHI 215
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+ST G+V I++ + + LAVSLHAP +R Q++P R +P+++L+ A + Y
Sbjct: 216 TLSTAGVVPFIDRLAEEPYQVKLAVSLHAPNDALRSQLVPINRRWPIDELLAACRRYVAR 275
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
+ +++ EY++++ VND+E+ A +L + L VNLIP+NP + FR +++
Sbjct: 276 TGRRVTFEYVLIEDVNDDERTAAELARRLRGLLCHVNLIPYNPTPAAPLFRRPGPERIER 335
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQL 267
F+ +L Y I TVR G +I+ ACGQL
Sbjct: 336 FRAVLE-RYGIPATVRYSRGVEIAAACGQL 364
>gi|149190092|ref|ZP_01868369.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1]
gi|148836122|gb|EDL53082.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1]
Length = 374
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R
Sbjct: 99 PDDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREVGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V +++ ++ +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLMPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGEI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +IMP + +E + +++ Y +S + K+ +EY++LD VND+
Sbjct: 218 ALAISLHAPNDKLRSEIMPINDRWDIEDFLASVRRYIASSNANRGKVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HA +L +LL+ +NLIPFNP S ++ S+ ++ F K L Y+ TVRK
Sbjct: 278 MDHARELAELLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFMKTLM-QYDYTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|148270145|ref|YP_001244605.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
petrophila RKU-1]
gi|281412513|ref|YP_003346592.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10]
gi|205829917|sp|A5ILF6.1|RLMN_THEP1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|147735689|gb|ABQ47029.1| radical SAM enzyme, Cfr family [Thermotoga petrophila RKU-1]
gi|281373616|gb|ADA67178.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10]
Length = 343
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 150/238 (63%), Gaps = 6/238 (2%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR--LSNIRNVVFMGMGE 90
R T CIS+QVGC + C FCATG GF NL++GEIV Q++ + I NVV+MGMGE
Sbjct: 100 RITACISTQVGCPVKCIFCATGMSGFVRNLTTGEIVAQILSMEKEEKKKIGNVVYMGMGE 159
Query: 91 PLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 149
PL NY ++++R + + +RIT+STVGI I + + + LA+SLHAP
Sbjct: 160 PLLNYENTIKSIRTLNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTN 219
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
R Q++P + + +E+++NA+K YQK + ++ IEY+++ G+NDE A +L ++L+
Sbjct: 220 FKRDQLVPLNKKYSIEEILNAVKIYQKKTGNRVTIEYVLIKGMNDEISDAKKLAEILKNM 279
Query: 210 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+V VNLIP NP +V + S +++ +F++IL S I +R++ G DI ACGQL
Sbjct: 280 KVFVNLIPVNP--TVEDLKKPSRERLLTFKRILLES-GIEAEIRREKGADIEAACGQL 334
>gi|381393545|ref|ZP_09919266.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
gi|379330761|dbj|GAB54399.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
Length = 388
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NLS EI+ Q+ +
Sbjct: 113 PETDRATLCVSSQVGCALECTFCSTAQQGFNRNLSVAEIIGQVWRVATFIGLSKDTSKRP 172
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++ D +
Sbjct: 173 ITNVVMMGMGEPLLNLKNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDML-GDQIDV 231
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDE 195
LA+SLHA ++R +++P + +P+E+ + A++ Y K +Q ++ +EY+ML+GVND
Sbjct: 232 ALAISLHAADNELRDELVPVNKKYPIEEFLAAVRRYLAKSKANQGRVTVEYVMLNGVNDS 291
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AH L ++L+ +NLIPFNP S + SS+ ++ F K+L SY T VRK
Sbjct: 292 TDQAHALARVLQDTPSKINLIPFNPYPG-SPYTCSSNSRIDRFSKVLM-SYGFTTVVRKT 349
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 350 RGDDIDAACGQLVGDVVDR 368
>gi|292491212|ref|YP_003526651.1| radical SAM protein [Nitrosococcus halophilus Nc4]
gi|291579807|gb|ADE14264.1| radical SAM enzyme, Cfr family [Nitrosococcus halophilus Nc4]
Length = 372
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/257 (40%), Positives = 155/257 (60%), Gaps = 15/257 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLC+SSQVGC + C+FCATG GF NL EI+ QL A++ I
Sbjct: 100 PEEDRGTLCVSSQVGCILDCSFCATGKQGFNRNLGVSEIIGQLWLANKALGRDPKGERII 159
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL N+ +V A+ +M + +S +R+T+ST G+V A+++ + P ++
Sbjct: 160 TNVVMMGMGEPLANFNNVVAAMNLMLDDFSYGLSWRRVTLSTAGMVPAMDRLRAICP-VS 218
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQH 198
LAVSLHAP ++R +++P + +P+ +L+ A + Y +++ + EY+ML GVND QH
Sbjct: 219 LAVSLHAPTDELRDELVPLNKRYPIGELLAACRRYVAGDRRRAVTFEYVMLAGVNDSLQH 278
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRTTVRKQMG 257
A L +LL+ VNLIPFNP S +R S + + F +++LRG + T RK G
Sbjct: 279 ARALLRLLQGLPAKVNLIPFNPFPG-SLYRRSDTETIDRFREELLRGG--LMTVTRKTRG 335
Query: 258 QDISGACGQLVVNLPDK 274
DI+ ACGQL + D+
Sbjct: 336 DDIAAACGQLAGRVQDR 352
>gi|152995382|ref|YP_001340217.1| radical SAM protein [Marinomonas sp. MWYL1]
gi|205829788|sp|A6VV03.1|RLMN_MARMS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|150836306|gb|ABR70282.1| radical SAM enzyme, Cfr family [Marinomonas sp. MWYL1]
Length = 371
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 157/259 (60%), Gaps = 17/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R+TLC+SSQVGC + C+FC+TG GF NL+ EI+ Q+ A +
Sbjct: 102 PDGDRATLCVSSQVGCSLDCSFCSTGKQGFNRNLTPAEIIGQVWIAIKSFGPMDPNGPRR 161
Query: 80 IRNVVFMGMGEPLNNYAALVEA-VRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ +V+A + +M + +S +R+T+ST G+V I + +
Sbjct: 162 VTNVVMMGMGEPLMNFEPVVDAMILMMHDHAYGLSKRRVTLSTSGVVPKIYEL-VKRTDV 220
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEE 196
+LA+SLHAP +R +++P + +P+ +L+ A + Y +N ++ I IEY ++ GVND E
Sbjct: 221 SLAISLHAPNDALRNELVPINKKYPIAELLEACQFYLENLPDKRHITIEYTLMSGVNDNE 280
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS-YNIRTTVRKQ 255
+ AH+L +LL+ + +NLIPFNP S + S+++ FQKIL + Y + TVR
Sbjct: 281 EQAHELAELLKVLECKINLIPFNPFPH-SGYEKPSNNRTRRFQKILADAGYTV--TVRTT 337
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV + DK
Sbjct: 338 RGDDIDAACGQLVGDFHDK 356
>gi|152993941|ref|YP_001359662.1| ribosomal RNA large subunit methyltransferase N [Sulfurovum sp.
NBC37-1]
gi|205829910|sp|A6QCU6.1|RLMN_SULNB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|151425802|dbj|BAF73305.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 359
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/274 (39%), Positives = 163/274 (59%), Gaps = 13/274 (4%)
Query: 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSN 61
+ +G VEAV++ +G + R T+CISSQVGCK+GC FC T GF N
Sbjct: 82 ELHDGHTVEAVLLLMRDKEYHEDGSVKHQ-ERYTVCISSQVGCKVGCAFCLTAKGGFMRN 140
Query: 62 LSSGEIVEQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPK 115
L++GEIVEQL + ++I N+VFMGMGEPL+N A+ ++V+I ++P
Sbjct: 141 LTAGEIVEQLRMIKKDNDIAANRRVNIVFMGMGEPLDNLEAVAKSVKIFAEEEGMAIAPH 200
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
R T+ST G+ I K G+NLA+SLHA ++R Q+MP +A+ +E ++ A+K +
Sbjct: 201 RQTISTSGLSSKIEKLGKMELGVNLAISLHAVDDELRQQLMPINKAYNIESIITAVKNFP 260
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235
N ++++ EY+++ VND+ A +L LL+ + VNLI FNP G ++F+ S+ +
Sbjct: 261 VNDRKRVMFEYLVIKDVNDDISAAKKLLSLLDGIKAKVNLIYFNPYGG-TEFKRPSEADM 319
Query: 236 SSFQKIL--RGSYNIRTTVRKQMGQDISGACGQL 267
FQ+ L RG + T+R+ G DIS ACGQL
Sbjct: 320 KKFQEYLTKRG---LHCTIRESKGLDISAACGQL 350
>gi|219872161|ref|YP_002476536.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
parasuis SH0165]
gi|219692365|gb|ACL33588.1| predicted Fe-S-cluster redox enzyme [Haemophilus parasuis SH0165]
Length = 386
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 157/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------SNIR- 81
P R+TLC+SSQVGC + C FC+T GF NLS EI+ Q+ AS++ + IR
Sbjct: 112 PKDDRATLCVSSQVGCALACTFCSTAQQGFNRNLSVSEIIGQVWRASKIIGNFGVTGIRP 171
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N ++ A+ IM + +S +R+T+ST G+V A++K + +
Sbjct: 172 ITNVVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQI-DV 230
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +++P + + ++ L++++ +Y + S K+ IEY+ML VND+
Sbjct: 231 ALAISLHAPNDELRNELIPLNKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLSHVNDD 290
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ ++ FQK L Y TVRK
Sbjct: 291 VEHAHQLADVLKNTPSKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVTVRKT 348
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 349 RGDDIDAACGQLAGDVIDR 367
>gi|198283710|ref|YP_002220031.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198248231|gb|ACH83824.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 363
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 152/245 (62%), Gaps = 11/245 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR----LSNIRNVV 84
PG R TLCISSQVGC + C+FCATG G NL + EI+ Q V +R L I N+V
Sbjct: 107 PGEDRGTLCISSQVGCSLACSFCATGAQGLSRNLETHEIIAQ-VRVARDFLGLDAITNIV 165
Query: 85 FMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
FMGMGEP+ N ++ A+ ++ + +RITVST G+V +++ ++ P +NLA+S
Sbjct: 166 FMGMGEPMLNLREVLPALDLLRDDYAYGFGARRITVSTAGVVPGMDRLGAESP-VNLAIS 224
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 203
LHA ++R ++P R +PL +L+ A + Y +++I EY+ML+GVND + HA +L
Sbjct: 225 LHASRDEIRDILVPVNRHYPLAELLAACRRYPLPPRRRITFEYVMLEGVNDADSHARELL 284
Query: 204 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK-ILRGSYNIRTTVRKQMGQDISG 262
+LL +VNLIPFNP S ++ S ++ +F+ ILRG N+ T R+ G DI+
Sbjct: 285 RLLRDIPAMVNLIPFNPFPG-SDYKRSPQVRIDAFRDIILRG--NVMTVTRRPRGDDIAA 341
Query: 263 ACGQL 267
ACGQL
Sbjct: 342 ACGQL 346
>gi|196247685|ref|ZP_03146387.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16]
gi|196212469|gb|EDY07226.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16]
Length = 366
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 163/273 (59%), Gaps = 22/273 (8%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ +G +E V+MR++ +++C+++QVGC++GC FCA+ G K
Sbjct: 100 FELHDGYSIETVLMRHNYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKR 145
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSP 114
+L +GEIV Q+V + + ++V MG+GEP +NY AL++ +RI+ +
Sbjct: 146 HLEAGEIVAQVVQVQKALDETEERVSSIVVMGIGEPFDNYDALIKFLRIVNHSKGLNIGA 205
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST GI+ I +F + +N A+SLHAP ++R ++MP +A+PL KLM A++ Y
Sbjct: 206 RHITVSTSGIIPKIYQFADEGMQINFAISLHAPTTELRTKLMPINKAYPLPKLMEAVRYY 265
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
+ + +++ EY + GVND+ +HA QL +LL+ + VNLIP N + + RT ++
Sbjct: 266 IEKTGRRVTFEYGLFGGVNDQLEHAEQLAELLKGLKCHVNLIPVNYVPERNYVRTPR-NQ 324
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ +F++ L+ + I T+R++ G DI ACGQL
Sbjct: 325 IFAFERALK-KHGINVTIRREHGHDIDAACGQL 356
>gi|384519050|ref|YP_005706355.1| radical SAM superfamily protein [Enterococcus faecalis 62]
gi|323481183|gb|ADX80622.1| radical SAM superfamily protein [Enterococcus faecalis 62]
Length = 357
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 158/275 (57%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + L ++C+++QVGC +GC FCA+G + + +L++
Sbjct: 87 DKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTA 132
Query: 65 GEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEIV Q++ + R +VV MG+GEP +NYA ++ +R + GL +
Sbjct: 133 GEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTINDDKGLA--IGA 190
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+EKLM A+ EY
Sbjct: 191 RHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMAAIDEY 250
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + +++ EYIML VND +HA QL LL + + VNLIP+NP+ Q+ SS
Sbjct: 251 IEKNNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSK 310
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ V F +L+ + I +RK+ G DI ACGQL
Sbjct: 311 EAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|218666070|ref|YP_002426339.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218518283|gb|ACK78869.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 362
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 152/245 (62%), Gaps = 11/245 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR----LSNIRNVV 84
PG R TLCISSQVGC + C+FCATG G NL + EI+ Q V +R L I N+V
Sbjct: 106 PGEDRGTLCISSQVGCSLACSFCATGAQGLSRNLETHEIIAQ-VRVARDFLGLDAITNIV 164
Query: 85 FMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
FMGMGEP+ N ++ A+ ++ + +RITVST G+V +++ ++ P +NLA+S
Sbjct: 165 FMGMGEPMLNLREVLPALDLLRDDYAYGFGARRITVSTAGVVPGMDRLGAESP-VNLAIS 223
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 203
LHA ++R ++P R +PL +L+ A + Y +++I EY+ML+GVND + HA +L
Sbjct: 224 LHASRDEIRDILVPVNRHYPLAELLAACRRYPLPPRRRITFEYVMLEGVNDADSHARELL 283
Query: 204 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK-ILRGSYNIRTTVRKQMGQDISG 262
+LL +VNLIPFNP S ++ S ++ +F+ ILRG N+ T R+ G DI+
Sbjct: 284 RLLRDIPAMVNLIPFNPFPG-SDYKRSPQVRIDAFRDIILRG--NVMTVTRRPRGDDIAA 340
Query: 263 ACGQL 267
ACGQL
Sbjct: 341 ACGQL 345
>gi|87118480|ref|ZP_01074379.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
gi|86166114|gb|EAQ67380.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
Length = 378
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 158/259 (61%), Gaps = 17/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R+TLC+SSQVGC + C+FC+TG GF NL+ E++ Q+ A +
Sbjct: 109 PDGDRATLCVSSQVGCSLDCSFCSTGKQGFNRNLTPSEVIGQVWVAIKSFGPFDPNGPRR 168
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ +V+A+ +M + +S +R+T+ST G+V I + ++ +
Sbjct: 169 VTNVVMMGMGEPLMNFEPVVDAMTLMMDDNAYGMSKRRVTLSTSGVVPKIYEL-AERTDV 227
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEE 196
+LA+SLHAP ++R ++P + +P+ +L+ A + Y + ++ I IEY M+ GVND E
Sbjct: 228 SLAISLHAPTNELRDVLVPINKKYPINELLGACQHYLTSLPDKRHITIEYTMMAGVNDSE 287
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS-YNIRTTVRKQ 255
+ A L KLL+T + +NLIPFNP + S + S+++V FQK+L Y + TVR
Sbjct: 288 EQARALSKLLKTLECKINLIPFNPFPN-SGYDKPSNNQVRRFQKVLADDGYTV--TVRTT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV + DK
Sbjct: 345 RGDDIDAACGQLVGDFHDK 363
>gi|15644462|ref|NP_229514.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
maritima MSB8]
gi|403253350|ref|ZP_10919651.1| ribosomal RNA large subunit methyltransferase N [Thermotoga sp.
EMP]
gi|418045773|ref|ZP_12683868.1| Ribosomal RNA large subunit methyltransferase N [Thermotoga
maritima MSB8]
gi|81553682|sp|Q9X240.1|RLMN_THEMA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|4982292|gb|AAD36781.1|AE001811_1 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351676658|gb|EHA59811.1| Ribosomal RNA large subunit methyltransferase N [Thermotoga
maritima MSB8]
gi|402810884|gb|EJX25372.1| ribosomal RNA large subunit methyltransferase N [Thermotoga sp.
EMP]
Length = 343
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 150/238 (63%), Gaps = 6/238 (2%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR--LSNIRNVVFMGMGE 90
R T CIS+QVGC + C FCATG GF NL++GEIV Q++ + I NVV+MGMGE
Sbjct: 100 RITACISTQVGCPVKCIFCATGMSGFVRNLTTGEIVAQILSMEKEEKKKIGNVVYMGMGE 159
Query: 91 PLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 149
PL NY ++++RI+ + +RIT+STVGI I + + + LA+SLHAP
Sbjct: 160 PLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTN 219
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
R Q++P + + +E+++NA+K YQ+ + ++ IEY+++ G+NDE A +L ++L
Sbjct: 220 FKRDQLVPLNKKYSIEEILNAVKIYQRKTGNRVTIEYVLIRGINDEISDAKKLAEILRNM 279
Query: 210 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+V VNLIP NP +V R S +++ +F++IL + I +R++ G DI ACGQL
Sbjct: 280 KVFVNLIPVNP--TVEGLRRPSRERLLTFKRILLEN-GIEAEIRREKGTDIEAACGQL 334
>gi|383189011|ref|YP_005199139.1| 2-vinyl bacteriochlorophyllide hydratase [Rahnella aquatilis CIP
78.65 = ATCC 33071]
gi|371587269|gb|AEX50999.1| 23S rRNA m2A2503 methyltransferase [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 399
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PDGDRATLCVSSQVGCALECTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVAGTRP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P R + ++ + A++ Y + N+ Q ++ IEY+MLD +ND
Sbjct: 243 ALAISLHAPNDAIRDEIVPINRKYNIDTFLAAVERYIGKSNANQGRVTIEYVMLDHINDG 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L + L+ +NLIP+NP R SS+ ++ F K+L Y VRK
Sbjct: 303 TEHAHELAERLKNTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-DYGFTVIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 361 RGDDIDAACGQLAGDVIDR 379
>gi|15616897|ref|NP_240110.1| hypothetical protein BU286 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681651|ref|YP_002468037.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
5A (Acyrthosiphon pisum)]
gi|257471340|ref|ZP_05635339.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
LSR1 (Acyrthosiphon pisum)]
gi|11387286|sp|P57373.1|RLMN_BUCAI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|25320166|pir||D84963 hypothetical protein [imported] - Buchnera sp. (strain APS)
gi|10038961|dbj|BAB12996.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219624494|gb|ACL30649.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
5A (Acyrthosiphon pisum)]
Length = 363
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 151/250 (60%), Gaps = 14/250 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------SNIR 81
P RSTLC+SSQ+GC + C+FCATG GF+ NL EI+ Q+ A++ NI
Sbjct: 107 PEKKRSTLCVSSQIGCSLKCHFCATGQEGFQRNLKVSEIIAQIWQANKRLKEKNIKKNIT 166
Query: 82 NVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 140
N+VFMGMGEPL N +V A+ I+ F +S +R+T+ST GIV A++K ++ ++L
Sbjct: 167 NIVFMGMGEPLLNLKNVVSALTIILDEYGFGLSKRRVTLSTSGIVPALDKLR-NMIDVSL 225
Query: 141 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQ 197
A+SLHAP +R IMP R + + ++++ +Y K S I IEY+MLD +ND +
Sbjct: 226 AISLHAPNDFIRNIIMPINRKYNISSVLSSALKYFKYSNANRGGITIEYVMLDRINDSNE 285
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
+A QL LL +NLIP+N S F S+ D+++ F ILR TT+RK G
Sbjct: 286 NARQLSVLLSKIPSKINLIPWNSFSGPS-FLCSNTDRINMFANILRKK-GFTTTIRKNRG 343
Query: 258 QDISGACGQL 267
+DI+ ACGQL
Sbjct: 344 EDINAACGQL 353
>gi|326389541|ref|ZP_08211108.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
200]
gi|325994546|gb|EGD52971.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
200]
Length = 342
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 155/238 (65%), Gaps = 8/238 (3%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-RLSNIRNVVFMGMGEPL 92
+T CIS+QVGC M C+FCA+ G +L + E+V+Q++ I N+V MG GEP
Sbjct: 101 NTACISTQVGCNMRCSFCASAIGGKVRDLKASEMVDQVIAIDGDYGKISNIVLMGSGEPF 160
Query: 93 NNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 149
+NY +++ ++I+ GL + + IT+ST GIV I +F + +NL++SLHAP
Sbjct: 161 DNYDEVMKFIKIVNNPHGLG--IGSRHITISTCGIVPKIYQFADEKLQVNLSISLHAPND 218
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
++R Q+MP +A+PLE+LM A K Y + ++++I EY +++GVND+++HA+QL LL+
Sbjct: 219 ELRTQLMPINKAYPLEELMKACKYYVEKTRRRITFEYSLIEGVNDKKEHAYQLVDLLKGM 278
Query: 210 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLIP N + + F+ ++++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 279 LCHVNLIPINYVKEIG-FKKANNEKVMMFKKIIEDA-GISCTVRRELGSDIEAACGQL 334
>gi|86152381|ref|ZP_01070591.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
260.94]
gi|315125097|ref|YP_004067101.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|85840678|gb|EAQ57930.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
260.94]
gi|315018819|gb|ADT66912.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 356
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 165/271 (60%), Gaps = 13/271 (4%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE+V++ GK R R T+C+SSQVGCK GC+FC T G K NLS+
Sbjct: 84 DGLRVESVLLPMKEEKIDAEGK-RISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSA 142
Query: 65 GEIVEQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 116
GEIV Q++ + +NI N+V+MGMGEPL+N + +AV+I+ GL +SP+R
Sbjct: 143 GEIVGQILWIKKQNNIPYERRINIVYMGMGEPLDNLKNVSKAVKILAQNDGLA--ISPRR 200
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
T+ST G+ I + G+ LA+SLHA ++R ++MP +A+ + +M+A++E+
Sbjct: 201 QTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPI 260
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
+ ++++ EY+++DG+ND+ +HA +L KLL + VNLI FNP S ++ S +
Sbjct: 261 DQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILFNP-HEGSLYKRPSLENAI 319
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
FQ +L S + T+R+ G DIS ACGQL
Sbjct: 320 KFQDLL-SSKGVTCTIRESKGLDISAACGQL 349
>gi|329926694|ref|ZP_08281104.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
gi|328939034|gb|EGG35400.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
Length = 353
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/273 (36%), Positives = 163/273 (59%), Gaps = 25/273 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+MR+ L ++C+++QVGC +GC+FCA+G + +LS+
Sbjct: 87 DGNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKKSRDLSA 132
Query: 65 GEIVEQL----VHASRL---SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
EIVEQ+ +H R + ++V MG+GEP +NY + + +R++ + P+
Sbjct: 133 AEIVEQVMQVQLHLDRRGSSERVSHLVVMGIGEPFDNYENMSDFIRVIKDHKGLAIGPRH 192
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
ITVST G+ + I +F G+NLA+SLHAP ++R +IM +A P+EKLM A+ Y +
Sbjct: 193 ITVSTSGLANKIVEFADSDLGVNLAISLHAPNDEIRTRIMKINKAIPIEKLMAAIDYYLE 252
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDDK 234
+ ++I +EYI+L VND+ +HA +L +L+ + + VNLIP+NP+ SQ++ S+ +
Sbjct: 253 KTNRRITLEYILLKDVNDQREHALELAELVGERRNLANVNLIPYNPVDEHSQYQRSTKES 312
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ F L+ I +VR + G DI ACGQL
Sbjct: 313 ITGFYDTLKKQ-GISCSVRLEHGTDIDAACGQL 344
>gi|254252255|ref|ZP_04945573.1| hypothetical protein BDAG_01475 [Burkholderia dolosa AUO158]
gi|124894864|gb|EAY68744.1| hypothetical protein BDAG_01475 [Burkholderia dolosa AUO158]
Length = 379
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 160/292 (54%), Gaps = 35/292 (11%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+D NG VE V + P G R TLC+SSQ GC + C FC+TG GF
Sbjct: 86 IDVGNGNAVETVFI--------------PEGTRGTLCVSSQAGCAVNCRFCSTGKQGFSR 131
Query: 61 NLSSGEIVEQLVHAS---RLSNIR-------------NVVFMGMGEPLNNYAALVEAVRI 104
NLS+GEI+ QL A R S R NVV MGMGEPL NY A+V A+R+
Sbjct: 132 NLSTGEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYNAVVPAMRL 191
Query: 105 M-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 163
M + +S +R+T+ST G+V +++ ++LP + LAVSLHAP +R +++P + P
Sbjct: 192 MLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELP-VALAVSLHAPNDALRDELVPLNKKHP 250
Query: 164 LEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 222
L +LM A + Y K + + I EY MLDGVND E HA +L + NLIPFNP
Sbjct: 251 LRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFP 310
Query: 223 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
R S +++ F +IL + I TTVRK G DI ACGQL + D+
Sbjct: 311 ESGLIR-SKPEQIKRFAQILIDA-GIVTTVRKTRGDDIDAACGQLAGAVKDR 360
>gi|336124879|ref|YP_004566927.1| Radical SAM family enzyme [Vibrio anguillarum 775]
gi|335342602|gb|AEH33885.1| Radical SAM family enzyme [Vibrio anguillarum 775]
Length = 386
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R
Sbjct: 112 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIGLEKETGRRP 171
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + +
Sbjct: 172 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQI-DV 230
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +IMP + ++ + +++ Y S + K+ +EY++LD VND+
Sbjct: 231 ALAISLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIATSNANRGKVTVEYVLLDHVNDD 290
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HAH+L KL++ +NLIPFNP S ++ S+ ++ FQK L Y TVRK
Sbjct: 291 MDHAHELAKLMKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTVRKT 348
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 349 RGDDIDAACGQLVGDVIDR 367
>gi|390568820|ref|ZP_10249112.1| radical SAM enzyme, Cfr family protein [Burkholderia terrae BS001]
gi|420250111|ref|ZP_14753338.1| 23S rRNA methyltransferase [Burkholderia sp. BT03]
gi|389939169|gb|EIN01006.1| radical SAM enzyme, Cfr family protein [Burkholderia terrae BS001]
gi|398062477|gb|EJL54251.1| 23S rRNA methyltransferase [Burkholderia sp. BT03]
Length = 382
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 161/296 (54%), Gaps = 39/296 (13%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+D NG VE V + P R TLC+SSQ GC + C FC+TG GF
Sbjct: 86 VDVGNGNAVETVFI--------------PEETRGTLCVSSQAGCAVNCRFCSTGKQGFSR 131
Query: 61 NLSSGEIVEQLVHAS---RLS-----------------NIRNVVFMGMGEPLNNYAALVE 100
NLS+GEI+ QL A R S + NVV MGMGEPL NY A+V
Sbjct: 132 NLSTGEIIGQLRMAEFALRASLGTAGGRATGGEGKGERVVTNVVMMGMGEPLLNYDAVVP 191
Query: 101 AVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 159
A+R+M + +S +R+T+ST G+V +++ +DLP + LAVSLHAP +R ++P
Sbjct: 192 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLP-VALAVSLHAPNDALRDVLVPLN 250
Query: 160 RAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 218
+ +PL +LM A + Y K + + I EY MLDGVND E HA +L + NLIPF
Sbjct: 251 KKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAHARELLAVTRDVPCKFNLIPF 310
Query: 219 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
NP FR S ++++ F ++L + + TTVRK G DI ACGQL + D+
Sbjct: 311 NPFPESGLFR-SKNEQIKRFAQVLIDA-GVVTTVRKTRGDDIDAACGQLAGAVKDR 364
>gi|374296870|ref|YP_005047061.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium clariflavum DSM
19732]
gi|359826364|gb|AEV69137.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium clariflavum DSM
19732]
Length = 348
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 161/266 (60%), Gaps = 19/266 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+M+Y L ++CISSQVGCKMGC FCA+ GF NL++
Sbjct: 88 DGNIIESVLMKYQHGL--------------SVCISSQVGCKMGCKFCASTGAGFVRNLTA 133
Query: 65 GEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 121
E+++Q++ + S I N+V MG+GEP +NY L++ +R++ + + I+VST
Sbjct: 134 SEMLDQVITIQKDAGSRIGNIVVMGIGEPFDNYDNLIKFIRLVNHKEGMNIGARHISVST 193
Query: 122 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181
G+V I K + + L++SLHAP + R +IMP + + ++KL+ A K Y + ++++
Sbjct: 194 CGLVPEILKLSEENLPVTLSISLHAPNDEDREKIMPVNKRYSIDKLIEACKIYTETTKRR 253
Query: 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241
I EY ++DGVND + A QL LL+ VNLIP N + + F+ SS ++V F+ +
Sbjct: 254 ITFEYALIDGVNDTFECAKQLSDLLKGMLCHVNLIPVNSVTNTG-FKKSSRERVMKFKSV 312
Query: 242 LRGSYNIRTTVRKQMGQDISGACGQL 267
L + I TTVR+++G DI+ ACGQL
Sbjct: 313 LE-KHGIETTVRRELGADINAACGQL 337
>gi|417843004|ref|ZP_12489081.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21127]
gi|341950238|gb|EGT76827.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21127]
Length = 383
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 108 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 167
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 168 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 226
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 227 ALAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDG 286
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 287 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIIRKT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 345 RGDDIDAACGQLAGDVIDR 363
>gi|319896694|ref|YP_004134887.1| fe-s-cluster redox enzyme [Haemophilus influenzae F3031]
gi|317432196|emb|CBY80548.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae F3031]
Length = 383
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 108 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 167
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 168 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 226
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 227 ALAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDG 286
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 287 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIIRKT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 345 RGDDIDAACGQLAGDVIDR 363
>gi|357051317|ref|ZP_09112511.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
saccharolyticus 30_1]
gi|355380139|gb|EHG27284.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
saccharolyticus 30_1]
Length = 354
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 161/275 (58%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + + ++C+++QVGC +GC FCA+G + + +L++
Sbjct: 86 DNHMIETVLMRQEYGM--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTA 131
Query: 65 GEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEIV Q++ + +VV MG+GEP +NY +++ ++I+ GL +
Sbjct: 132 GEIVAQIMLVQHYFDELNAGERVSHVVVMGIGEPFDNYENVMQFLQIINDPKGLA--IGA 189
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+ H I +F + +NLA+SLHAP +VR +M R+FP+EKLM A+ Y
Sbjct: 190 RHITVSTSGLAHKIKEFAENGLQVNLAISLHAPNNEVRTSMMRINRSFPIEKLMEAIDYY 249
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + ++I EYIMLD VND +HA QL +LL+ + + VNLIP+NP+ Q+ S
Sbjct: 250 LEKTNRRITFEYIMLDHVNDRPEHARQLVELLKNKRKLSYVNLIPYNPVSEHDQYARSKK 309
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ V +F IL+ + I +RK+ G DI ACGQL
Sbjct: 310 EDVLAFYDILKKN-GINCVIRKEHGTDIDAACGQL 343
>gi|253575779|ref|ZP_04853114.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
gi|251844822|gb|EES72835.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
Length = 348
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/267 (38%), Positives = 156/267 (58%), Gaps = 26/267 (9%)
Query: 9 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 68
+E VIM+++ +++C+++QVGCK+GC FCA+ G K NL+ GEIV
Sbjct: 90 IETVIMKHNYG--------------NSICVTTQVGCKVGCTFCASTLGGLKRNLTPGEIV 135
Query: 69 EQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVS 120
Q+V A ++ + ++V MG GEP NY A ++ +RIM GL + + ITVS
Sbjct: 136 AQVVQAQKILDAKGERVSSIVIMGTGEPFENYDATMKFLRIMIHEKGL--NIGQRHITVS 193
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
T GIV I +F + +NLA+S+HAP +R ++MP R FP + +M AL+ Y + +
Sbjct: 194 TSGIVPNIYRFADENTQINLAISIHAPNDALRSKLMPVNRRFPFDDVMEALRYYIAKTGR 253
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
+I EY ++ GVND+ +HA +L +++ VNLIP N + RTS +D + FQ+
Sbjct: 254 RITFEYALIGGVNDQPEHAEELADVIKDMLCHVNLIPVNYVPERKYVRTSRND-IFKFQR 312
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQL 267
IL I T+R++ G DI+ ACGQL
Sbjct: 313 IL-ADKGINVTIRREQGHDIAAACGQL 338
>gi|424776103|ref|ZP_18203088.1| radical SAM superfamily protein 2 [Alcaligenes sp. HPC1271]
gi|422888563|gb|EKU30949.1| radical SAM superfamily protein 2 [Alcaligenes sp. HPC1271]
Length = 382
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 112/275 (40%), Positives = 159/275 (57%), Gaps = 25/275 (9%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSN-------- 79
P R TLCISSQ GC + C FC+TG GF NL++ EI+ QL A R L N
Sbjct: 100 PEDDRGTLCISSQAGCTVACPFCSTGYQGFNRNLTTSEIIGQLWFARRALLNAPETARIG 159
Query: 80 ---------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAIN 129
I NVV MGMGEPL NY ++ A+R+M + +S +R+TVST G+V ++
Sbjct: 160 DAEQTSTRVISNVVMMGMGEPLLNYDQVLGALRLMLDDNAYGLSRRRVTVSTSGVVPMMD 219
Query: 130 KFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIM 188
+ D P + LAVSLHAP +R +++P + +PL +L++A Y +++ + I EYIM
Sbjct: 220 RLAKDCP-VALAVSLHAPNDALRDRLVPLNKKYPLAELLDACNRYLEHAPRDFITFEYIM 278
Query: 189 LDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYN 247
LDG+ND +QHA +L + + NLIPFNP S + SS +V F Q+++ G
Sbjct: 279 LDGINDTDQHAQELLDIARIVRCKFNLIPFNPFPQ-SGLKRSSAARVKQFAQRLMDGG-- 335
Query: 248 IRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPP 282
+ TTVRK G DI+ ACGQL ++ D+ + P
Sbjct: 336 VVTTVRKTRGDDIAAACGQLAGDIRDRTRIEQRLP 370
>gi|304415499|ref|ZP_07396137.1| hypothetical protein in radical SAM superfamily [Candidatus
Regiella insecticola LSR1]
gi|304282648|gb|EFL91173.1| hypothetical protein in radical SAM superfamily [Candidatus
Regiella insecticola LSR1]
Length = 378
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 103 PEADRATLCVSSQVGCALECTFCSTAQQGFSRNLRVAEIIGQVWRAAKIIGSLKSSGRRP 162
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ I M F +S +R+T+ST G+V A++K D+ +
Sbjct: 163 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 221
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P R + ++ + A++ Y S Q ++ +EY+MLD +ND
Sbjct: 222 ALAISLHAPTDEIRDEIVPINRKYNIDTFLAAVRRYLAKSNANQGRVTVEYVMLDHINDS 281
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 282 PEQAHQLAECLKNTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVL-IQYGFTTIVRKT 339
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 340 RGDDIDAACGQLAGEVIDR 358
>gi|283782458|ref|YP_003373213.1| radical SAM enzyme, Cfr family [Pirellula staleyi DSM 6068]
gi|283440911|gb|ADB19353.1| radical SAM enzyme, Cfr family [Pirellula staleyi DSM 6068]
Length = 391
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 168/284 (59%), Gaps = 25/284 (8%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
GG +E V++R G R ++C+SSQVGC MGC FCA+G G NL++G
Sbjct: 120 GGRIECVLLR--------------DGDRRSICVSSQVGCAMGCVFCASGLDGVDRNLTAG 165
Query: 66 EIVEQLVHASRL----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRIT 118
EIVEQ++ RL + ++V MGMGEPL N ++EA+ T GL +SP+RIT
Sbjct: 166 EIVEQMLLLQRLLPEKERLSHIVMMGMGEPLANIDHVLEALGEATREDGL--GISPRRIT 223
Query: 119 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178
+STVG+ A++K + +LAVSLHAP ++R +++P +A +EK++ + Y + S
Sbjct: 224 ISTVGLPAALDKLCNLEAKYHLAVSLHAPNNELRTRLVPINKAIGIEKVIESADRYFETS 283
Query: 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 238
+++ EY++L GVND HA +L +LL ++N+IP+NP+ + ++T S + + F
Sbjct: 284 GRRLTFEYVLLAGVNDHPDHAQELAELLAGRTAMLNVIPYNPVAGLP-YKTPSGNAIHRF 342
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPP 282
+ IL + I R++ G +I+ ACGQL + P + +S P
Sbjct: 343 RNILVDA-GINVKFRQRKGSEINAACGQLRRSTPTLLGIESPAP 385
>gi|293557268|ref|ZP_06675815.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039]
gi|291600555|gb|EFF30860.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039]
Length = 355
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 158/284 (55%), Gaps = 25/284 (8%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + L ++C+++QVGC +GC FCA+G + +L++
Sbjct: 87 DKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASGLLKKNRDLTA 132
Query: 65 GEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
GEIV Q++ + RN VV MG+GEP +NY +++ + I+ + +
Sbjct: 133 GEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHIINDAKGLAIGARH 192
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
ITVST G+ H I +F ++ +NLA+SLHAP +VR IM R+FP+EKLM A+ EY +
Sbjct: 193 ITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLE 252
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDK 234
+ ++I EYIML+ VND +HA QL LL+ + VNLIP+NP+ Q+
Sbjct: 253 KTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVSEHDQYSRCPKAD 312
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 278
V F +L+ + + +RK+ G DI ACGQL K AK
Sbjct: 313 VLRFYDVLKKN-GVNCVIRKEHGTDIDAACGQLRSKQMKKTVAK 355
>gi|160876257|ref|YP_001555573.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS195]
gi|217972550|ref|YP_002357301.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS223]
gi|373950343|ref|ZP_09610304.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS183]
gi|378709457|ref|YP_005274351.1| radical SAM enzyme, Cfr family [Shewanella baltica OS678]
gi|386323818|ref|YP_006019935.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
BA175]
gi|418024003|ref|ZP_12662987.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS625]
gi|205829880|sp|A9KXL1.1|RLMN_SHEB9 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807210|sp|B8E9S4.1|RLMN_SHEB2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|160861779|gb|ABX50313.1| radical SAM enzyme, Cfr family [Shewanella baltica OS195]
gi|217497685|gb|ACK45878.1| radical SAM enzyme, Cfr family [Shewanella baltica OS223]
gi|315268446|gb|ADT95299.1| radical SAM enzyme, Cfr family [Shewanella baltica OS678]
gi|333817963|gb|AEG10629.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
BA175]
gi|353536876|gb|EHC06434.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS625]
gi|373886943|gb|EHQ15835.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS183]
Length = 373
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+TG GF NL+ EIV Q+ S
Sbjct: 99 PEDDRATLCVSSQVGCALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGERP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D +
Sbjct: 159 ITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDAIDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LAVS+HAP ++R ++P + +PL++ + ++ Y S + ++ +EY+MLD +ND
Sbjct: 218 ALAVSIHAPNDELRDILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDS 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AH+L KL++ VNLIPFNP S + SS+ ++ F K+L Y VRK
Sbjct: 278 TDQAHELAKLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGFTVIVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 336 RGDDIDAACGQLAGDIRDR 354
>gi|291563554|emb|CBL42370.1| 23S rRNA m(2)A-2503 methyltransferase [butyrate-producing bacterium
SS3/4]
Length = 348
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 158/266 (59%), Gaps = 19/266 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+M+Y ++G +++CISSQVGC+MGC FCA+ G NL
Sbjct: 88 DGNVIESVLMKY------HHG--------NSVCISSQVGCRMGCRFCASTLDGLTRNLRP 133
Query: 65 GEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 121
E+++Q+ R + R NVV MG GEP++NY L+ +R+++ +S + ITVST
Sbjct: 134 SEMLDQIYRIQRSTGERVSNVVVMGSGEPMDNYDNLIRFIRLLSDENGLNISQRNITVST 193
Query: 122 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181
GIV I K + + LA+SLHAP + R +MP A ++ L +++ A KEY K + ++
Sbjct: 194 CGIVPKILKLAEEGLSITLALSLHAPDDETRKTLMPIANSYSLSEVLPACKEYYKKTGRR 253
Query: 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241
+ EY ++ GVND A +L LL+ Q VNLIP NPI F+ S+ D + +F+
Sbjct: 254 LTFEYSLVQGVNDNLDEAKRLTALLKDMQGHVNLIPVNPIKE-RDFKQSNRDAIDAFRGY 312
Query: 242 LRGSYNIRTTVRKQMGQDISGACGQL 267
L + I T+R++MG+DI GACGQL
Sbjct: 313 LE-KHGINVTIRREMGRDIGGACGQL 337
>gi|257870949|ref|ZP_05650602.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
gallinarum EG2]
gi|257805113|gb|EEV33935.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
gallinarum EG2]
Length = 360
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 161/275 (58%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + + ++C+++QVGC +GC FCA+G + + +L++
Sbjct: 92 DNHMIETVLMRQEYGM--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTA 137
Query: 65 GEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEIV Q++ + +VV MG+GEP +NY +++ ++I+ GL +
Sbjct: 138 GEIVAQIMLVQHYFDELNAGERVSHVVVMGIGEPFDNYENVMQFLQIINDPKGLA--IGA 195
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+ H I +F + +NLA+SLHAP +VR +M R+FP+EKLM A+ Y
Sbjct: 196 RHITVSTSGLAHKIKEFAENGLQVNLAISLHAPNNEVRTSMMRINRSFPIEKLMEAIDYY 255
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + ++I EYIMLD VND +HA QL +LL+ + + VNLIP+NP+ Q+ S
Sbjct: 256 LEKTNRRITFEYIMLDHVNDRPEHARQLVELLKNKRKLSYVNLIPYNPVSEHDQYARSKK 315
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ V +F IL+ + I +RK+ G DI ACGQL
Sbjct: 316 EDVLAFYDILKKN-GINCVIRKEHGTDIDAACGQL 349
>gi|253682293|ref|ZP_04863090.1| radical SAM enzyme, Cfr family [Clostridium botulinum D str. 1873]
gi|253562005|gb|EES91457.1| radical SAM enzyme, Cfr family [Clostridium botulinum D str. 1873]
Length = 343
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 99/273 (36%), Positives = 162/273 (59%), Gaps = 19/273 (6%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++G +E+V+MRY +++C+S+Q+GC+MGC FCA+ G
Sbjct: 82 FEYKDGNIIESVVMRYKHG--------------NSICVSTQIGCRMGCKFCASTVEGVVR 127
Query: 61 NLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRI 117
NL+SGEIV Q++ A + I NVV MG GEPL+NY +V+ ++++ ++ + I
Sbjct: 128 NLTSGEIVAQILKAQQEIGERISNVVLMGSGEPLDNYDNVVKFIKLINDDNALKIGQRHI 187
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+ST GIV I + + + LA+SLHAP ++R +MP A + +++L++A K Y +
Sbjct: 188 TLSTCGIVPKIKELADEKLQITLAISLHAPNDEIRKSMMPVANKYNIKELLDACKYYSRI 247
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
+ ++I EY +++G+ND ++A +L L+ VNLIP N I + ++ S +
Sbjct: 248 TNRRITFEYALVNGINDSAKNAEELFNQLKGILCHVNLIPVNEIKE-NDYKRSRAKNIEE 306
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
F+ IL Y I TT+R++MG DI+GACGQL N
Sbjct: 307 FKNILI-KYGIETTIRREMGSDINGACGQLRRN 338
>gi|423347472|ref|ZP_17325159.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides
merdae CL03T12C32]
gi|409217335|gb|EKN10312.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides
merdae CL03T12C32]
Length = 343
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 149/263 (56%), Gaps = 18/263 (6%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G FVE+V + P R+TLC+SSQVGCKM C FC TG GF NLS+
Sbjct: 89 GNFVESVYI--------------PTEDRATLCVSSQVGCKMNCLFCMTGKQGFTKNLSAN 134
Query: 66 EIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGI 124
EI+ Q+ + N+VFMGMGEPL+N L + + I+T + SPKRITVST+G+
Sbjct: 135 EILNQIQSLPETEELTNIVFMGMGEPLDNVDELFKVLEILTASYGYAWSPKRITVSTIGV 194
Query: 125 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 184
+ +F + +LAVSLH+P D R +MP +AFP ++ +K+Y Q+++
Sbjct: 195 AKGLKRFLEE-SDCHLAVSLHSPYPDERRSLMPVEKAFPACDIIETIKQYDFTHQRRVSF 253
Query: 185 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 244
EYI+ +ND+ QHA L LL+ VNLI F+ I +VS +S ++ +F+ L
Sbjct: 254 EYIVFKNLNDDLQHAKALVCLLDKVPCRVNLIRFHAIPNVS-LESSDLARMEAFRDTLNA 312
Query: 245 SYNIRTTVRKQMGQDISGACGQL 267
+ I T+R G+DI ACG L
Sbjct: 313 A-GIVCTIRASRGEDIFAACGML 334
>gi|187734933|ref|YP_001877045.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC
BAA-835]
gi|205829710|sp|B2UNF2.1|RLMN_AKKM8 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|187424985|gb|ACD04264.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC
BAA-835]
Length = 359
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 166/280 (59%), Gaps = 11/280 (3%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G VE+VI+ + NG+ R TLC+SSQVGC GC FCA+G +G K +L+
Sbjct: 87 EDGSLVESVII---PAAAAENGE---KSERVTLCVSSQVGCAFGCKFCASGLLGLKRHLT 140
Query: 64 SGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVS 120
+GEI+ Q++ A ++ R N+VFMGMGEPL+N+ L +A+ I+T ++ + IT+S
Sbjct: 141 TGEIIGQILSAEAIAGKRVNNIVFMGMGEPLSNFDNLADALEIITSHRGLEIGARHITIS 200
Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
T G V + K + + LAVSLH +VR QIMP + +PL +L+ AL+E+ + Q
Sbjct: 201 TSGFVPGLKKLAAYPRQIRLAVSLHGATDEVRDQIMPVNKKWPLSQLIPALEEWNRGRNQ 260
Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
+EYI++ +ND + A L ++ + VNLIP+N + + ++ S+++ SF+
Sbjct: 261 MPTLEYILIRDINDSPKDASHLVRIAKRLHAKVNLIPYNTVEGLP-WKRPSEERCRSFRD 319
Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 280
+ + I T+R + G DI+ ACGQL + + S K++
Sbjct: 320 AVHKA-RIPVTMRYEKGHDINAACGQLRLRKEQEKSGKTS 358
>gi|392940848|ref|ZP_10306492.1| 23S rRNA m2A2503 methyltransferase [Thermoanaerobacter siderophilus
SR4]
gi|392292598|gb|EIW01042.1| 23S rRNA m2A2503 methyltransferase [Thermoanaerobacter siderophilus
SR4]
Length = 342
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 155/237 (65%), Gaps = 6/237 (2%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-RLSNIRNVVFMGMGEPL 92
+T C+S+QVGC M C+FCA+ G +L + E+V+Q++ I N+V MG GEP
Sbjct: 101 NTACVSTQVGCNMRCSFCASAIGGKVRDLKASEMVDQVIAIDGDYGKISNIVLMGSGEPF 160
Query: 93 NNYAALVEAVRIMTGLPFQ--VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 150
+NY +++ ++I+ P+ + + IT+ST GIV I +F + +NL++SLHAP +
Sbjct: 161 DNYDEVMKFIKIVNN-PYGLGIGGRHITISTCGIVPKIYQFADEKLQVNLSISLHAPNDE 219
Query: 151 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 210
+R Q+MP +A+PLE+LM A K Y + ++++I EY +++GVND+++HA+QL LL+
Sbjct: 220 LRTQLMPINKAYPLEELMKACKYYVEKTRRRITFEYSLIEGVNDKKEHAYQLVDLLKGML 279
Query: 211 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLIP N + + F+ ++++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 280 CHVNLIPINYVKEIG-FKKANNEKVMMFKKIIEDA-GISCTVRRELGSDIEAACGQL 334
>gi|293394872|ref|ZP_06639162.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
gi|291422623|gb|EFE95862.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
Length = 398
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PEADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKVTGQRP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P R + +E +++++ Y + S Q ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPNDTIRDEIVPINRKYNIETFLSSVRRYLEKSNANQGRVTVEYVMLDHINDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AHQL ++L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TDDAHQLAEVLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|297182513|gb|ADI18675.1| predicted Fe-S cluster redox enzyme [uncultured Acidobacteria
bacterium HF4000_26D02]
Length = 384
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 145/251 (57%), Gaps = 7/251 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ---LVHASRLSNIR-NVV 84
P P T C+S+QVGC M C FC TG MG NLS+GEI Q L L + R N+V
Sbjct: 124 PDTPAMTFCVSTQVGCAMRCGFCLTGQMGLVRNLSAGEIAGQVRVLARELELQDRRFNIV 183
Query: 85 FMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL+NY A ++A+RI+ ++P+R+T+ST+GI+ A+ + + NLA+S
Sbjct: 184 LMGMGEPLHNYDATMKALRILAAPAGLALTPRRVTLSTIGILPALERLAHEPWLPNLAIS 243
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 203
LHA +R +++P +R L L + + + +I EY++L GVND E A +L
Sbjct: 244 LHATTDRLRHELIPTSRTQRLGDLAAVCRRFPVKHRDRITFEYVLLAGVNDTEADATRLP 303
Query: 204 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 263
KLL + VNLIP N + F SD +V F + L S +R +VRK G+DI A
Sbjct: 304 KLLRGLRAKVNLIPLNEAPGIP-FSRPSDRRVDWFARSL-ASAGLRVSVRKSRGRDIRAA 361
Query: 264 CGQLVVNLPDK 274
CGQL+V P +
Sbjct: 362 CGQLIVEGPRR 372
>gi|421493317|ref|ZP_15940674.1| YFGB [Morganella morganii subsp. morganii KT]
gi|400192485|gb|EJO25624.1| YFGB [Morganella morganii subsp. morganii KT]
Length = 395
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 148/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 121 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRP 180
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 181 ITNVVMMGMGEPLLNLTHVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKL-GDMIDV 239
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP DVR +I+P + + +E + +++ Y S ++ +EY+MLD +ND
Sbjct: 240 ALAISLHAPTDDVRDEIVPINKKYNIETFLASVRRYLGKSNANGGRVTVEYVMLDHINDS 299
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AHQL L+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 300 TDQAHQLAACLKDTPSKINLIPWNPFPGAPYGR-SSNSRIDRFAKVLM-EYGFTTIVRKT 357
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 358 RGDDIDAACGQLAGDVIDR 376
>gi|354565937|ref|ZP_08985110.1| Ribosomal RNA large subunit methyltransferase N [Fischerella sp.
JSC-11]
gi|353546445|gb|EHC15893.1| Ribosomal RNA large subunit methyltransferase N [Fischerella sp.
JSC-11]
Length = 354
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 151/244 (61%), Gaps = 5/244 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFM 86
P R T+C+S+QVGC M C+FCATG G+K NL+ EIV+Q+ V + N+VFM
Sbjct: 112 PTEKRLTVCVSTQVGCPMACDFCATGKGGYKRNLARHEIVDQVLTVQEDFQQRVSNIVFM 171
Query: 87 GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
GMGEPL N ++ A++ + + + ITVSTVGI I +F + + LAVSLHA
Sbjct: 172 GMGEPLLNTDNVLAAIQSLNQ-DVGIGQRNITVSTVGIRDRIRQFAQNQLQVTLAVSLHA 230
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
P Q +R +++P+AR + ++ L+ +EY + +++ EYI+L GVND +HA +L K L
Sbjct: 231 PNQTLREKLIPSARPYKIDDLLTECREYVDITGRRVSFEYILLAGVNDLPEHAAELAKRL 290
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
FQ VNLIP+NPI V ++ + D++ +F K+L+ ++I +VR G + ACGQ
Sbjct: 291 RGFQSHVNLIPYNPIFEVD-YQRPNRDRIQAFVKVLK-QHHIAVSVRYSRGLEADAACGQ 348
Query: 267 LVVN 270
L N
Sbjct: 349 LRAN 352
>gi|357417728|ref|YP_004930748.1| hypothetical protein DSC_10315 [Pseudoxanthomonas spadix BD-a59]
gi|355335306|gb|AER56707.1| hypothetical protein DSC_10315 [Pseudoxanthomonas spadix BD-a59]
Length = 403
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 156/265 (58%), Gaps = 22/265 (8%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR--------LSNI 80
P R TLC+SSQVGC + C FC+T T GF NLS+ EI+ Q+ A+R + +
Sbjct: 121 PDRTRGTLCVSSQVGCALNCQFCSTATQGFNRNLSTAEIIGQVWVAARHLGNVPAQIRRL 180
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL N+ +V A+ +M L + ++ KR+T+ST G+V I++ S+ ++
Sbjct: 181 TNVVMMGMGEPLANFDNVVRAMSVMRDDLGYGLASKRVTLSTAGMVPMIDRLSSE-SDVS 239
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQ 197
LAVSLHA +R +++P R +P+E+LM A Y K S ++ I EY ++ GVND+ +
Sbjct: 240 LAVSLHAADDALRSELVPLNRKYPIEQLMAACARYLKASPRRDSITFEYTLMKGVNDQPE 299
Query: 198 HAHQLGKLLETF--------QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 249
HA L +L+ F VNLIPFNP ++++ S + + +FQKIL +
Sbjct: 300 HARALARLMRQFGNQMQSREAGKVNLIPFNPFPG-TRYQRSEEGDIRAFQKILLDQ-QVL 357
Query: 250 TTVRKQMGQDISGACGQLVVNLPDK 274
T VR+ G DI ACGQL + D+
Sbjct: 358 TMVRRTRGDDIDAACGQLKGQVMDR 382
>gi|145632612|ref|ZP_01788346.1| hypothetical protein CGSHi3655_02319 [Haemophilus influenzae 3655]
gi|144986807|gb|EDJ93359.1| hypothetical protein CGSHi3655_02319 [Haemophilus influenzae 3655]
Length = 383
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 108 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 167
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 168 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 226
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 227 ALAISLHAPNDELRDEIVPINKKYNIKMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDG 286
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ ++ FQK L Y+ +RK
Sbjct: 287 VEHAHQLADVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYDFTVIIRKT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 345 RGDDIDAACGQLAGDVIDR 363
>gi|435853626|ref|YP_007314945.1| 23S rRNA m2A2503 methyltransferase [Halobacteroides halobius DSM
5150]
gi|433670037|gb|AGB40852.1| 23S rRNA m2A2503 methyltransferase [Halobacteroides halobius DSM
5150]
Length = 343
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 144/238 (60%), Gaps = 5/238 (2%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SNIRNVVFMGMGE 90
R ++CIS+QVGC MGCNFCATG G NL++GEIV Q++ R+ + I NVV MGMGE
Sbjct: 103 RKSICISTQVGCAMGCNFCATGLQGLSRNLTTGEIVNQILEVERIKETKITNVVLMGMGE 162
Query: 91 PLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 149
PL NY +++A+ ++ L + +++T+ST G+V I + + L LA+SLHAP
Sbjct: 163 PLANYKQVLKALELINHDLGLNIGMRKVTLSTCGLVPEIRRLAEEKLQLTLAISLHAPNN 222
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
+R ++MP +P+ LM A Y + + +++ EY ++ GVND +HA QL LL
Sbjct: 223 QLRSKMMPVNDRYPIHDLMEACVYYIQQTNRRVTFEYALVAGVNDSRKHAQQLATLLADK 282
Query: 210 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V VNLIP N + +S + S+ + F++ L + I ++R + G DI ACGQL
Sbjct: 283 LVHVNLIPINKVEKLS-YSNPSNKAIKQFKEEL-DNQGIPVSIRTERGADIDAACGQL 338
>gi|404484905|ref|ZP_11020109.1| 23S rRNA methyltransferase [Barnesiella intestinihominis YIT 11860]
gi|404339910|gb|EJZ66341.1| 23S rRNA methyltransferase [Barnesiella intestinihominis YIT 11860]
Length = 341
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 146/240 (60%), Gaps = 4/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLC+SSQVGCKM C+FC TG GFK +LSS EI+ Q++ + N+VFMGM
Sbjct: 97 PDRDRATLCVSSQVGCKMNCSFCMTGKQGFKRSLSSAEIINQILSVEYSDKLTNLVFMGM 156
Query: 89 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEP +N ++ A+ ++T F SPKRITVST+G ++ I +F D +LAVSLH+P
Sbjct: 157 GEPFDNLDEVMRALSVLTSEWGFAWSPKRITVSTIGHLNGIRRF-LDESRCHLAVSLHSP 215
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
+ R +IMP +AFP+ +++ L+ + Q+++ EYI+ +G ND HA L LL+
Sbjct: 216 FPEERLRIMPVEKAFPMTDVLDLLRRRDFSHQRRLSFEYILFNGYNDSLDHADALACLLK 275
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLI F+ I V+ +++ + +F+ L + + T+R G+DI ACG L
Sbjct: 276 GMDCRVNLIRFHAIPGVT-LKSTDMQSMEAFRDRL-NNRGVVATIRASRGEDIFAACGML 333
>gi|306832938|ref|ZP_07466070.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338]
gi|304424837|gb|EFM27971.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338]
Length = 368
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 167/292 (57%), Gaps = 29/292 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+MR L ++C++SQVGC +GC+FCA+G + + +L+S
Sbjct: 93 DGMLIETVLMRQHYGL--------------SVCVTSQVGCNIGCSFCASGLLKKQRDLTS 138
Query: 65 GEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEI Q++ + + R +VV MG+GEP +NY ++ +R + GL +
Sbjct: 139 GEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYNNVLRFLRTINDDNGLA--IGA 196
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+ H I F + +NLAVSLHAP ++R QIM R+FPLEKL A++ Y
Sbjct: 197 RHITVSTSGLAHKIRDFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEKLFAAIEYY 256
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + +++ EYIML+ VND ++A +L L + + + +NLIP+NP+ Q+ SS
Sbjct: 257 VETTNRRVTFEYIMLNEVNDFPENAQELADLTKKIRKLSYINLIPYNPVSEHDQYSRSSK 316
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 284
++V++F +L+ + + VR++ G DI ACGQL N + K+ T
Sbjct: 317 ERVAAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAEKT 367
>gi|29829163|ref|NP_823797.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
avermitilis MA-4680]
gi|81719951|sp|Q82JY3.1|RLMN_STRAW RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|29606269|dbj|BAC70332.1| hypothetical protein SAV_2621 [Streptomyces avermitilis MA-4680]
Length = 368
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/281 (38%), Positives = 156/281 (55%), Gaps = 33/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE+V+MRY R T+CISSQ GC M C FCATG G NLS+
Sbjct: 104 DGTLVESVLMRYPD--------------RVTMCISSQAGCGMNCPFCATGQAGLDRNLST 149
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLP 109
GEIV Q+V R + + N+VFMGMGEPL NY +V A+R +T GL
Sbjct: 150 GEIVHQIVDGMRALRDGEIPGGPARLSNIVFMGMGEPLANYKRVVGAIRALTDPEPDGL- 208
Query: 110 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 169
+S + ITVSTVG+V AI++F + LA+SLHAP ++R ++P + + ++++
Sbjct: 209 -GLSQRGITVSTVGLVPAIHRFADEGFKCRLAISLHAPDDELRDTLVPVNTRWKVREVLD 267
Query: 170 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 229
A EY S +++ IEY ++ +ND+ +LG++L+ V VNLIP NP +
Sbjct: 268 AGWEYAARSGRRLSIEYALIRDINDQAWRGDRLGRMLKGRPVHVNLIPLNPTPGSKWTAS 327
Query: 230 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
+D+ + + I ++ + TVR GQ+I GACGQL
Sbjct: 328 RPEDEKAFVEAI--AAHGVPVTVRDTRGQEIDGACGQLAAT 366
>gi|410085619|ref|ZP_11282338.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii SC01]
gi|455738863|ref|YP_007505129.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii subsp. morganii KT]
gi|409768328|gb|EKN52392.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii SC01]
gi|455420426|gb|AGG30756.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii subsp. morganii KT]
Length = 392
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 148/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 118 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRP 177
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 178 ITNVVMMGMGEPLLNLTHVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKL-GDMIDV 236
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP DVR +I+P + + +E + +++ Y S ++ +EY+MLD +ND
Sbjct: 237 ALAISLHAPTDDVRDEIVPINKKYNIETFLASVRRYLGKSNANGGRVTVEYVMLDHINDS 296
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AHQL L+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 297 TDQAHQLAACLKDTPSKINLIPWNPFPGAPYGR-SSNSRIDRFAKVLM-EYGFTTIVRKT 354
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 355 RGDDIDAACGQLAGDVIDR 373
>gi|407691681|ref|YP_006816470.1| ribosomal RNA large subunit methyltransferase N [Actinobacillus
suis H91-0380]
gi|407387738|gb|AFU18231.1| ribosomal RNA large subunit methyltransferase N [Actinobacillus
suis H91-0380]
Length = 393
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 119 PEADRATLCVSSQVGCALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 178
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ IM + +S +R+T+ST G+V A++ + +
Sbjct: 179 ITNVVMMGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKI-DV 237
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + ++ LM+++ +Y + S K+ IEY++LD VND
Sbjct: 238 ALAISLHAPNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDG 297
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ +V FQK L Y VRK
Sbjct: 298 TEHAHQLAEVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVIVRKT 355
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 356 RGDDIDAACGQLAGDVIDR 374
>gi|336063790|ref|YP_004558649.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pasteurianus ATCC 43144]
gi|334281990|dbj|BAK29563.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pasteurianus ATCC 43144]
Length = 368
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 167/292 (57%), Gaps = 29/292 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+MR L ++C++SQVGC +GC+FCA+G + + +L+S
Sbjct: 93 DGMLIETVLMRQHYGL--------------SVCVTSQVGCNIGCSFCASGLLKKQRDLTS 138
Query: 65 GEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEI Q++ + + R +VV MG+GEP +NY ++ +R + GL +
Sbjct: 139 GEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYNNVLRFLRTINDDNGLA--IGA 196
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+ H I F + +NLAVSLHAP ++R QIM R+FPLEKL A++ Y
Sbjct: 197 RHITVSTSGLAHKIRDFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEKLFAAIEYY 256
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + +++ EYIML+ VND ++A +L L + + + +NLIP+NP+ Q+ SS
Sbjct: 257 VETTNRRVTFEYIMLNEVNDFPENAQELADLTKKIRKLSYINLIPYNPVSEHDQYSRSSK 316
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 284
++V++F +L+ + + VR++ G DI ACGQL N + K+ T
Sbjct: 317 ERVAAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAEKT 367
>gi|154491020|ref|ZP_02030961.1| hypothetical protein PARMER_00937 [Parabacteroides merdae ATCC
43184]
gi|154088768|gb|EDN87812.1| 23S rRNA m2A2503 methyltransferase [Parabacteroides merdae ATCC
43184]
Length = 286
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 149/263 (56%), Gaps = 18/263 (6%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G FVE+V + P R+TLC+SSQVGCKM C FC TG GF NLS+
Sbjct: 32 GNFVESVYI--------------PTEDRATLCVSSQVGCKMNCLFCMTGKQGFTKNLSAN 77
Query: 66 EIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGI 124
EI+ Q+ + N+VFMGMGEPL+N L + + I+T + SPKRITVST+G+
Sbjct: 78 EILNQIQSLPETEELTNIVFMGMGEPLDNVDELFKVLEILTASYGYAWSPKRITVSTIGV 137
Query: 125 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 184
+ +F + +LAVSLH+P D R +MP +AFP ++ +K+Y Q+++
Sbjct: 138 AKGLKRFLEE-SDCHLAVSLHSPYPDERRSLMPVEKAFPACDIIETIKQYDFTHQRRVSF 196
Query: 185 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 244
EYI+ +ND+ QHA L LL+ VNLI F+ I +VS +S ++ +F+ L
Sbjct: 197 EYIVFKNLNDDLQHAKALVCLLDKVPCRVNLIRFHAIPNVS-LESSDLARMEAFRDTLNA 255
Query: 245 SYNIRTTVRKQMGQDISGACGQL 267
+ I T+R G+DI ACG L
Sbjct: 256 A-GIVCTIRASRGEDIFAACGML 277
>gi|212710618|ref|ZP_03318746.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
30120]
gi|422017490|ref|ZP_16364055.1| ribosomal RNA large subunit methyltransferase N [Providencia
alcalifaciens Dmel2]
gi|212686699|gb|EEB46227.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
30120]
gi|414105640|gb|EKT67197.1| ribosomal RNA large subunit methyltransferase N [Providencia
alcalifaciens Dmel2]
Length = 399
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 149/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 125 PEADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRP 184
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 185 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKL-GDMIDV 243
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP DVR +I+P + + +E + ++ Y S ++ +EY+MLD +ND
Sbjct: 244 ALAISLHAPTDDVRDEIVPINKKYNIETFLASVNRYLTKSNANAGRVTVEYVMLDHINDS 303
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 304 VEQAHQLAECLKNTPSKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 361
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 362 RGDDIDAACGQLAGDVIDR 380
>gi|416892165|ref|ZP_11923598.1| hypothetical protein ATCC33389_0690 [Aggregatibacter aphrophilus
ATCC 33389]
gi|347815034|gb|EGY31677.1| hypothetical protein ATCC33389_0690 [Aggregatibacter aphrophilus
ATCC 33389]
Length = 384
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 110 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 170 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+ML+ VND
Sbjct: 229 ALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLNHVNDH 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK
Sbjct: 289 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|120598175|ref|YP_962749.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
W3-18-1]
gi|120558268|gb|ABM24195.1| radical SAM enzyme, Cfr family [Shewanella sp. W3-18-1]
Length = 399
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EIV Q+ S
Sbjct: 125 PEDDRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGDRP 184
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D +
Sbjct: 185 ITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDV 243
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LAVS+HAP ++R ++P + +PL++ + ++ Y S + ++ +EY+MLD +ND
Sbjct: 244 ALAVSIHAPNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDS 303
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AH+L KL++ VNLIPFNP S + SS+ ++ F K+L Y + VRK
Sbjct: 304 TEQAHELAKLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKT 361
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 362 RGDDIDAACGQLAGDIRDR 380
>gi|87308293|ref|ZP_01090434.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM
3645]
gi|87288850|gb|EAQ80743.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM
3645]
Length = 351
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 160/280 (57%), Gaps = 21/280 (7%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ +GG +E V++R G R T+CIS+QVGC MGC FCA+G G +
Sbjct: 83 LQLHDGGRIECVLLR--------------DGDRRTICISTQVGCAMGCVFCASGLDGVER 128
Query: 61 NLSSGEIVEQLVHASRL----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPK 115
NL+ GEI+EQ++ RL + ++V MGMGEPL N L+ A+ + +S +
Sbjct: 129 NLTVGEIIEQMLRLQRLLPVGERLSHIVVMGMGEPLANVDRLLSALDFASSEEGLGISHR 188
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
RIT+STVG+ AI K +LAVSLHAP +R QI+P + + ++ A Y
Sbjct: 189 RITISTVGLPPAIRKLADRDSRYHLAVSLHAPDDQLRNQIVPTNKNIGIHAILEAADHYF 248
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235
+ S +++ EY++L +ND+ +HAH+L KLL ++N+IP+NP+ + +RT S +
Sbjct: 249 EISGRRLTFEYVLLAELNDQPEHAHRLAKLLRGRPALLNIIPYNPVAGLP-YRTPSKEAQ 307
Query: 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 275
+F+ IL G+ + R++ G I+ ACGQL N P+ +
Sbjct: 308 HAFRAILEGA-GLTVKFRQKKGDKINAACGQLRRNTPENL 346
>gi|156973378|ref|YP_001444285.1| ribosomal RNA large subunit methyltransferase N [Vibrio harveyi
ATCC BAA-1116]
gi|388601640|ref|ZP_10160036.1| ribosomal RNA large subunit methyltransferase N [Vibrio campbellii
DS40M4]
gi|444426831|ref|ZP_21222235.1| ribosomal RNA large subunit methyltransferase N [Vibrio campbellii
CAIM 519 = NBRC 15631]
gi|205829926|sp|A7MU39.1|RLMN_VIBHB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|156524972|gb|ABU70058.1| hypothetical protein VIBHAR_01065 [Vibrio harveyi ATCC BAA-1116]
gi|444239929|gb|ELU51482.1| ribosomal RNA large subunit methyltransferase N [Vibrio campbellii
CAIM 519 = NBRC 15631]
Length = 375
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R
Sbjct: 99 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIGLQKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R QIMP + ++ + +++ Y +S + K+ +EY++LD VND+
Sbjct: 218 ALAISLHAPNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HA +L +L++ +NLIPFNP S ++ S+ ++ FQK L Y TVRK
Sbjct: 278 MDHARELAELMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|298368581|ref|ZP_06979899.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282584|gb|EFI24071.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str.
F0314]
Length = 364
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 151/256 (58%), Gaps = 13/256 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLCISSQVGC + C FC+TG GF NL++ EI+ QL A++ I
Sbjct: 96 PETDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P +
Sbjct: 156 SNVVMMGMGEPMANFDNVVTALSIMLDNHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHA +VR +I+P + +PL++LM A + Y K + I EY+MLDGVND QH
Sbjct: 215 LAVSLHASNDEVRDKIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDNAQH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L L+ NLIPFNP S + SS + + F+ IL+ + + TVRK G
Sbjct: 275 ARELIDLVRDVPCKFNLIPFNPFPH-SGYERSSAENIRVFRDILQQAGFV-VTVRKTRGD 332
Query: 259 DISGACGQLVVNLPDK 274
DI ACGQL + DK
Sbjct: 333 DIDAACGQLAGQVKDK 348
>gi|423724940|ref|ZP_17699082.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides
merdae CL09T00C40]
gi|409236112|gb|EKN28921.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides
merdae CL09T00C40]
Length = 343
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 149/263 (56%), Gaps = 18/263 (6%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G FVE+V + P R+TLC+SSQVGCKM C FC TG GF NLS+
Sbjct: 89 GNFVESVYI--------------PTEDRATLCVSSQVGCKMNCLFCMTGKQGFTKNLSAN 134
Query: 66 EIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGI 124
EI+ Q+ + N+VFMGMGEPL+N L + + I+T + SPKRITVST+G+
Sbjct: 135 EILNQIQSLPETEELTNIVFMGMGEPLDNVDELFKVLEILTASYGYAWSPKRITVSTIGV 194
Query: 125 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 184
+ +F + +LAVSLH+P D R +MP +AFP ++ +K+Y Q+++
Sbjct: 195 AKGLKRFLEE-SDCHLAVSLHSPYPDERRSLMPVEKAFPACDIIETIKQYDFTHQRRVSF 253
Query: 185 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 244
EYI+ +ND+ QHA L LL+ VNLI F+ I +VS +S ++ +F+ L
Sbjct: 254 EYIVFKNLNDDLQHAKALVCLLDKVPCRVNLIRFHAIPNVS-LESSDLARMEAFRDTLNA 312
Query: 245 SYNIRTTVRKQMGQDISGACGQL 267
+ I T+R G+DI ACG L
Sbjct: 313 A-GIVCTIRASRGEDIFAACGML 334
>gi|406977258|gb|EKD99451.1| hypothetical protein ACD_22C00256G0024 [uncultured bacterium]
Length = 350
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 149/241 (61%), Gaps = 9/241 (3%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVH-ASRLSNIRNVVFMGMGEPL 92
S+LCISSQ GC + C FCATG +GFK NL++ EI +Q+++ + + +V FMGMGEP
Sbjct: 105 SSLCISSQSGCALACKFCATGAIGFKKNLTADEIADQVLYFRQKKLPVGSVSFMGMGEPF 164
Query: 93 NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 151
N L EA++I+T +S +I+VSTVG+V I + + P +NLA SLH P +D
Sbjct: 165 AN-PNLWEAIKILTDKDKIGISRHKISVSTVGLVPGIERLTKEFPQINLAFSLHTPFRDQ 223
Query: 152 RCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL----- 206
R ++MP +A+ +E +M A+K Y ++ K+FI Y +++G ND +HA L L+
Sbjct: 224 RAELMPITKAYSIETVMEAVKNYVLSTNNKVFIAYALMEGTNDSLEHAKALVSLIKKQGA 283
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
+++ VNLI FNP ++F+ S +V F +I+ + I+ T+R+ G DI ACGQ
Sbjct: 284 KSYLYHVNLIRFNPGPGTAEFKRPSVTRVDKFMEIIEKA-GIKVTLRQSFGLDIYAACGQ 342
Query: 267 L 267
L
Sbjct: 343 L 343
>gi|319775768|ref|YP_004138256.1| Fe-S-cluster redox protein [Haemophilus influenzae F3047]
gi|317450359|emb|CBY86575.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae F3047]
Length = 383
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 108 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 167
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 168 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 226
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 227 ALAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDG 286
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 287 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIIRKT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 345 RGDDIDAACGQLAGDVIDR 363
>gi|428771745|ref|YP_007163535.1| 23S rRNA m(2)A-2503 methyltransferase [Cyanobacterium aponinum PCC
10605]
gi|428686024|gb|AFZ55491.1| 23S rRNA m(2)A-2503 methyltransferase [Cyanobacterium aponinum PCC
10605]
Length = 342
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 149/241 (61%), Gaps = 5/241 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFM 86
P R T+C+SSQVGC M C+FCATG GF NL + EI++Q+ V + NVVFM
Sbjct: 99 PTDKRLTVCVSSQVGCIMACDFCATGKGGFTRNLYAHEIIDQILTVQNDFGERVSNVVFM 158
Query: 87 GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
GMGEPL N +V+A++ + + + +T+STVG+ + I + + AVSLHA
Sbjct: 159 GMGEPLLNLPQVVKAIKSINE-DVGIGARSLTISTVGLPNKILELAQHKLQITFAVSLHA 217
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
Q VR +++P+A +PLE+L+ +EY K + +++ EYI+L GVND QHA +L + L
Sbjct: 218 SNQAVREKLIPSANHYPLEQLLADCREYVKMTGRRVTFEYILLSGVNDLPQHAQELAQHL 277
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
FQ VNLIP+NPI S + ++ S ++VS F+K+L+ I +VR G D ACGQ
Sbjct: 278 HGFQTHVNLIPYNPI-SEADYQRPSPERVSQFKKLLQQE-KIAVSVRYSRGLDADAACGQ 335
Query: 267 L 267
L
Sbjct: 336 L 336
>gi|345009644|ref|YP_004811998.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
violaceusniger Tu 4113]
gi|344035993|gb|AEM81718.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
violaceusniger Tu 4113]
Length = 368
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 158/281 (56%), Gaps = 33/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE+V+MRY R T+CISSQ GC M C FCATG G NLS+
Sbjct: 104 DGTLVESVLMRYPD--------------RVTMCISSQAGCGMNCPFCATGQAGLDRNLST 149
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLP 109
EIV Q+V R + + N+VFMGMGEPL NY +V A+R +T GL
Sbjct: 150 AEIVHQIVDGMRALRDGEIPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPEPDGL- 208
Query: 110 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 169
VS + ITVSTVG+V A+ +F + LAVSLHAP ++R ++P + + ++++
Sbjct: 209 -GVSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVREVLD 267
Query: 170 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 229
A EY + S +++ IEY ++ +ND+ A LG+LL+ +V VNLIP NP S++
Sbjct: 268 AAWEYAEKSGRRVSIEYALIKDINDQAWRADLLGRLLKGRRVHVNLIPLNPTPG-SKWTA 326
Query: 230 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
S + +F L ++ + TVR GQ+I GACGQL +
Sbjct: 327 SRPEDEKAFVAALE-AHGVPVTVRDTRGQEIDGACGQLAAS 366
>gi|289522515|ref|ZP_06439369.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289504351|gb|EFD25515.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 343
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 148/238 (62%), Gaps = 5/238 (2%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGE 90
R T C+S+QVGC + C FCA+G GF +LS GEIV Q + +L+ +I NVV+MGMGE
Sbjct: 103 RLTACLSTQVGCPLACTFCASGEGGFVRDLSGGEIVGQFLAMEKLAGRDIDNVVYMGMGE 162
Query: 91 PLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 149
P N ++ ++++I+ + + +RIT+ST GIV I + L+VSLHAP
Sbjct: 163 PFLNQESVFKSIKILNEPKMRGLGIRRITISTAGIVPGILALAEAQMPVKLSVSLHAPND 222
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
+R ++MP + +PL L+ AL+ YQ + ++ EY+ML+GVND ++A++L LL+
Sbjct: 223 RLRSKLMPINKKYPLASLLEALRRYQSATNDRVTFEYLMLEGVNDLPEYAYELAALLKGL 282
Query: 210 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+NLIP+N + S+++ SS ++ +F IL NI +R++ G DI+ ACGQL
Sbjct: 283 SFYINLIPYNQVEG-SKYKRSSAGRIKAFSNIL-SQLNIEHEIRRERGSDINAACGQL 338
>gi|336310628|ref|ZP_08565600.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
HN-41]
gi|386314500|ref|YP_006010665.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens 200]
gi|205829898|sp|A1RHQ0.2|RLMN_SHESW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|319427125|gb|ADV55199.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens 200]
gi|335866358|gb|EGM71349.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
HN-41]
Length = 373
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EIV Q+ S
Sbjct: 99 PEDDRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGDRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D +
Sbjct: 159 ITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LAVS+HAP ++R ++P + +PL++ + ++ Y S + ++ +EY+MLD +ND
Sbjct: 218 ALAVSIHAPNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDS 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AH+L KL++ VNLIPFNP S + SS+ ++ F K+L Y + VRK
Sbjct: 278 TEQAHELAKLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 336 RGDDIDAACGQLAGDIRDR 354
>gi|319892212|ref|YP_004149087.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
pseudintermedius HKU10-03]
gi|386319519|ref|YP_006015682.1| radical SAM enzyme, Cfr family [Staphylococcus pseudintermedius
ED99]
gi|317161908|gb|ADV05451.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
pseudintermedius HKU10-03]
gi|323464690|gb|ADX76843.1| radical SAM enzyme, Cfr family [Staphylococcus pseudintermedius
ED99]
Length = 364
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 159/273 (58%), Gaps = 22/273 (8%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ Q+G +E V+MR+D +++C+++QVGC++GC FCA+ G K
Sbjct: 98 FELQDGYTIETVLMRHDYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKR 143
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSP 114
NL +GEIV Q++ + + ++V MG+GEP NY +++ ++I+ +
Sbjct: 144 NLEAGEIVSQVLTVQKALDETDERVSSIVIMGIGEPFENYDEMMDFLKIVNDDHSLNIGA 203
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST GIV I F + +N AVSLHA ++R ++MP RA+ ++KLM A++ Y
Sbjct: 204 RHITVSTSGIVPRIYDFADESLQINFAVSLHAANNEIRSKLMPINRAYDVDKLMEAIQYY 263
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
Q+ ++++I EY + GVND+ +HA +L KL++ VNLIP N + + +T DD
Sbjct: 264 QEKTKRRITFEYGLFGGVNDQLEHARELAKLIKPLNCHVNLIPVNHVPERNYVKTPKDD- 322
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ F+K L+ I T+R++ G DI ACGQL
Sbjct: 323 IFKFEKELK-KLGINATIRREQGADIDAACGQL 354
>gi|417840793|ref|ZP_12486901.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M19501]
gi|419839249|ref|ZP_14362662.1| 23S rRNA m2A2503 methyltransferase [Haemophilus haemolyticus HK386]
gi|341950604|gb|EGT77191.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M19501]
gi|386909557|gb|EIJ74226.1| 23S rRNA m2A2503 methyltransferase [Haemophilus haemolyticus HK386]
Length = 383
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------SNIR- 81
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++ + IR
Sbjct: 108 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGIRP 167
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 168 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 226
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 227 ALAISLHAPNDELRDEIVPINKKYNIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDG 286
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 287 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIIRKT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 345 RGDDIDAACGQLAGDVIDR 363
>gi|329123609|ref|ZP_08252169.1| cfr family radical SAM enzyme [Haemophilus aegyptius ATCC 11116]
gi|327469808|gb|EGF15273.1| cfr family radical SAM enzyme [Haemophilus aegyptius ATCC 11116]
Length = 390
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 115 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 174
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 175 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 233
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 234 ALAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDG 293
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 294 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIIRKT 351
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 352 RGDDIDAACGQLAGDVIDR 370
>gi|342904040|ref|ZP_08725842.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21621]
gi|342904658|ref|ZP_08726457.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21621]
gi|341953079|gb|EGT79593.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21621]
gi|341954049|gb|EGT80543.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21621]
Length = 383
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------SNIR- 81
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++ + IR
Sbjct: 108 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGIRP 167
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 168 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 226
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 227 ALAISLHAPNDELRDEIVPINKKYNIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDG 286
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 287 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIIRKT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 345 RGDDIDAACGQLAGDVIDR 363
>gi|328953509|ref|YP_004370843.1| ribosomal RNA large subunit methyltransferase N [Desulfobacca
acetoxidans DSM 11109]
gi|328453833|gb|AEB09662.1| Ribosomal RNA large subunit methyltransferase N [Desulfobacca
acetoxidans DSM 11109]
Length = 350
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 107/246 (43%), Positives = 148/246 (60%), Gaps = 12/246 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----SNIRNVV 84
P TLC+SSQVGC GC FC TG G NLS EI+ Q++ A L I N+V
Sbjct: 97 PENDHYTLCLSSQVGCAQGCRFCLTGRRGLTRNLSPAEIINQVLAARSLVGKRQAISNLV 156
Query: 85 FMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
FMGMGEPL+N+A LV+A+ I+ GL F S +R+TVSTVG+ I + +NLA
Sbjct: 157 FMGMGEPLDNFANLVKALTIILAPWGLNF--SYRRVTVSTVGLAPLIPALGHAI-RVNLA 213
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
VSL+AP +R Q+MP R +PL +++ A + + ++I Y++L G+ND HA +
Sbjct: 214 VSLNAPNDALRSQLMPVNRKYPLAQIIEACRAFPLPPHRRITFCYVLLQGINDTPSHARE 273
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L +LL+ F+ +NLIPFNP S F+ + + V +FQ IL + T +R+ G DIS
Sbjct: 274 LSRLLQGFRAKINLIPFNP-DSCLPFKRPTPEAVLAFQDILIQKHYT-TLIRESRGADIS 331
Query: 262 GACGQL 267
ACGQL
Sbjct: 332 AACGQL 337
>gi|117928743|ref|YP_873294.1| ribosomal RNA large subunit methyltransferase N [Acidothermus
cellulolyticus 11B]
gi|205829702|sp|A0LV48.1|RLMN_ACIC1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|117649206|gb|ABK53308.1| 23S rRNA m(2)A-2503 methyltransferase [Acidothermus cellulolyticus
11B]
Length = 430
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 166/292 (56%), Gaps = 29/292 (9%)
Query: 5 NGGFVEAVIMRY------DSSLGK---YNGKPRPGGPRSTLCISSQVGCKMGCNFCATGT 55
+G +VE+V+MRY ++LG +G R G R TLC+SSQ GC MGC FCATG
Sbjct: 120 DGAYVESVLMRYPPRHSRHAALGAEADADGGSRHG--RVTLCVSSQAGCGMGCPFCATGQ 177
Query: 56 MGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIM 105
G NLS+ EIV Q+ A+R + NVVFMGMGEPL NY ++V+AVR +
Sbjct: 178 AGLVRNLSAAEIVAQVAVAARTVARGEMAGGPGRLSNVVFMGMGEPLANYRSVVDAVRRI 237
Query: 106 TGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 162
T P +S + +TVSTVG+V AI + ++ + LAVSLHAP ++R ++P R +
Sbjct: 238 TEPPPEGLGISQRSVTVSTVGLVPAIERLATEGLAVTLAVSLHAPDDELRNVLVPINRRW 297
Query: 163 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV---VNLIPFN 219
P+ ++ A Y + +++++ +EY ++ VND+ A L ++ F VNLIP N
Sbjct: 298 PVRDVLGAAARYAEVTKRRVSVEYALIRDVNDQPWRADALAAQVKEFLGRLGHVNLIPLN 357
Query: 220 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 271
P S + S+ + F + L + + TVR G++++GACGQL +
Sbjct: 358 PTPG-SPWTASTPRAQAEFVRRL-AAAGVTVTVRDTRGREVNGACGQLAATV 407
>gi|373467502|ref|ZP_09558798.1| 23S rRNA m2A2503 methyltransferase [Haemophilus sp. oral taxon 851
str. F0397]
gi|371758536|gb|EHO47303.1| 23S rRNA m2A2503 methyltransferase [Haemophilus sp. oral taxon 851
str. F0397]
Length = 390
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------SNIR- 81
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++ + IR
Sbjct: 115 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGIRP 174
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 175 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 233
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 234 ALAISLHAPNDELRDEIVPINKKYNIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDG 293
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 294 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIIRKT 351
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 352 RGDDIDAACGQLAGDVIDR 370
>gi|186476180|ref|YP_001857650.1| radical SAM protein [Burkholderia phymatum STM815]
gi|205829685|sp|B2JIV3.1|RLMN_BURP8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|184192639|gb|ACC70604.1| radical SAM enzyme, Cfr family [Burkholderia phymatum STM815]
Length = 382
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 116/296 (39%), Positives = 160/296 (54%), Gaps = 39/296 (13%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+D NG VE V + P R TLC+SSQ GC + C FC+TG GF
Sbjct: 86 VDVGNGNAVETVYI--------------PEETRGTLCVSSQAGCAVNCRFCSTGKQGFSR 131
Query: 61 NLSSGEIVEQLVHAS---RLSN-----------------IRNVVFMGMGEPLNNYAALVE 100
NL +GEI+ QL A R S + NVV MGMGEPL NY A+V
Sbjct: 132 NLGTGEIIGQLRMAEFALRASRGTAGGRATGGDGKGERVVTNVVMMGMGEPLLNYDAVVP 191
Query: 101 AVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 159
A+R+M + +S +R+T+ST G+V +++ +DLP + LAVSLHAP +R +++P
Sbjct: 192 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLP-VALAVSLHAPNDALRDELVPLN 250
Query: 160 RAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 218
+ +PL +LM A + Y K + + I EY MLDGVND E HA +L + NLIPF
Sbjct: 251 KKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAHARELLAVTRDVPCKFNLIPF 310
Query: 219 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
NP R+ S +++ F ++L + + TTVRK G DI ACGQL + D+
Sbjct: 311 NPFPESGLLRSKS-EQIKRFAQVLMDA-GVVTTVRKTRGDDIDAACGQLAGAVKDR 364
>gi|117619957|ref|YP_856292.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|205829708|sp|A0KJ41.1|RLMN_AERHH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|117561364|gb|ABK38312.1| radical SAM enzyme, Cfr family [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 367
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 150/254 (59%), Gaps = 11/254 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----IRNVV 84
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++ I NVV
Sbjct: 98 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAKIVGGKRPITNVV 157
Query: 85 FMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N A +V A+R+ M + +S +R+T+ST G+V A++ D + LA+S
Sbjct: 158 MMGMGEPLLNLANVVPAMRLMMDDFGYGISKRRVTISTSGVVPALDML-GDQIDVALAIS 216
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAH 200
LHAP +R +IMP + +E+ + ++ Y S ++ +EY++LD +ND+ QHAH
Sbjct: 217 LHAPNDKLRSEIMPINDKYNIEEFLAGVRRYLGKSNANGGRVTVEYVLLDHINDDMQHAH 276
Query: 201 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
+L K+L+ +NLIPFNP + + S+ ++ F K+L Y VRK G DI
Sbjct: 277 ELAKVLKDTPSKINLIPFNPFPG-NPYGKPSNSRIDRFSKVLM-EYGFTVIVRKTRGDDI 334
Query: 261 SGACGQLVVNLPDK 274
ACGQLV + D+
Sbjct: 335 DAACGQLVGEVIDR 348
>gi|422732627|ref|ZP_16788958.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0645]
gi|315161444|gb|EFU05461.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0645]
Length = 357
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 158/275 (57%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + L ++C+++QVGC +GC FCA+G + + +L++
Sbjct: 87 DKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTA 132
Query: 65 GEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEIV Q++ + R +VV MG+GEP +NYA ++ +R + GL +
Sbjct: 133 GEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTINDDKGLA--IGA 190
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+EKLM A+ EY
Sbjct: 191 RHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMVAIDEY 250
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + +++ EYIML VND +HA QL LL + + VNLIP+NP+ Q+ SS
Sbjct: 251 IEKNNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSK 310
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ V F +L+ + I +RK+ G DI ACGQL
Sbjct: 311 EAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|431926418|ref|YP_007239452.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas stutzeri RCH2]
gi|431824705|gb|AGA85822.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas stutzeri RCH2]
Length = 382
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 160/259 (61%), Gaps = 17/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R TLC+SSQ GC + C+FC+TG GF SNL++ E++ Q+ A++
Sbjct: 101 PQGGRGTLCVSSQAGCALDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSIPAKIDRA 160
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A+ I M L + +S +++T+ST G+V I++ + + +
Sbjct: 161 ITNVVMMGMGEPLLNFDNVVAAMHIMMDDLGYGISKRKVTLSTSGVVPMIDEL-AKVIDV 219
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEE 196
+LA+SLHAP +R Q++P + +PL+ L++A K Y Q ++ + IEY +L G+ND+
Sbjct: 220 SLALSLHAPNNALRDQLVPINKKYPLDMLLSACKRYISQLGEKRVLTIEYTLLKGINDQP 279
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQ 255
+HA Q+ LL +NLIPFNP S + S++ + FQ IL +G +N+ TVR
Sbjct: 280 EHAEQMITLLADIPCKINLIPFNPFPH-SGYERPSNNAIRRFQDILHKGGHNV--TVRTT 336
Query: 256 MGQDISGACGQLVVNLPDK 274
G+DI ACGQLV + D+
Sbjct: 337 RGEDIDAACGQLVGQVLDR 355
>gi|334135998|ref|ZP_08509477.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF7]
gi|333606611|gb|EGL17946.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF7]
Length = 353
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 161/273 (58%), Gaps = 25/273 (9%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+MR+ L ++C+++QVGC +GC+FCA+G + +LS+
Sbjct: 87 DGNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKKSRDLSA 132
Query: 65 GEIVEQLVH-------ASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKR 116
GEIVEQ++ A + + ++V MG+GEP +N+ L + +R++ + +
Sbjct: 133 GEIVEQIMKVQFYLDKAGKEERVSHIVVMGIGEPFDNFENLSDFLRVVKDHKGLAIGARH 192
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
ITVST G+ I +F +NLAVSLHAP ++R +IM +A P+EKLM+A+ Y
Sbjct: 193 ITVSTSGLADKIVEFADSDLHVNLAVSLHAPNNELRTRIMKINKAIPIEKLMDAIDYYLG 252
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDK 234
+ +++ +EYI+L VND +HA +L +L+ + V VNLIP+NP+ SQ++ S +
Sbjct: 253 KTNRRLTLEYILLKDVNDAREHAEELAQLIGDRRPLVNVNLIPYNPVDEHSQYQRSEKES 312
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V +F IL+ N+ +VR + G DI ACGQL
Sbjct: 313 VRAFYDILKKQ-NVSCSVRLEHGADIDAACGQL 344
>gi|229495911|ref|ZP_04389637.1| radical SAM enzyme, Cfr family [Porphyromonas endodontalis ATCC
35406]
gi|229317224|gb|EEN83131.1| radical SAM enzyme, Cfr family [Porphyromonas endodontalis ATCC
35406]
Length = 339
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 152/242 (62%), Gaps = 8/242 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P G R+TLC+SSQ+GCKM C FC TG GFK NL+S EIV Q++ + N+V+MGM
Sbjct: 96 PEGDRATLCVSSQIGCKMDCLFCMTGKQGFKGNLTSAEIVNQILSIPDSDKLTNIVYMGM 155
Query: 89 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GEPL+N A+++++ T GL +SPKRIT+S++G+ ++KF +LA+SLH
Sbjct: 156 GEPLDNVEAVLKSIACFTHPSGL--AMSPKRITLSSIGLEPGLSKFLEQC-SCHLAISLH 212
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 205
+ + R +MP RA P+EK + LK Y + Q+++ EYI+ G+ND+ HA L +L
Sbjct: 213 NALPEERLSMMPIERAMPIEKTIETLKRYNFSGQRRLTFEYIVFGGLNDDIAHAKALLRL 272
Query: 206 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 265
+ + +NLI ++ I +V+ +S ++++ F L G+ + TT+R G+DI+ ACG
Sbjct: 273 IRPLECHINLIRYHRIPNVA-LPSSQEERMQRFADYLNGA-GVPTTIRASRGEDIAAACG 330
Query: 266 QL 267
L
Sbjct: 331 ML 332
>gi|160880620|ref|YP_001559588.1| radical SAM protein [Clostridium phytofermentans ISDg]
gi|205829644|sp|A9KM95.1|RLMN_CLOPH RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|160429286|gb|ABX42849.1| radical SAM enzyme, Cfr family [Clostridium phytofermentans ISDg]
Length = 356
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 162/273 (59%), Gaps = 19/273 (6%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE V+M+Y ++G +++CISSQVGC+MGC FCA+ G NL +
Sbjct: 92 DGNVVECVLMKY------HHG--------NSVCISSQVGCRMGCRFCASTLGGLTRNLKT 137
Query: 65 GEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 121
E+++++ RLS R N+V MG GEP++NY V+ +R+++ +S + ITVST
Sbjct: 138 SEMLDEVYQIQRLSGERVSNIVIMGTGEPMDNYDNFVKFIRMISSSDGLNISQRNITVST 197
Query: 122 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181
GIV + + + LA+SLHAP + R +IMP A ++ L+ ++NA Y + + ++
Sbjct: 198 CGIVPKMRALAEEGFAITLALSLHAPNDEERAKIMPVANSYQLQDVLNACDYYYEKTGRR 257
Query: 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241
+ EY ++DGVND A +L +LL+ VNLIP NPI ++ S+ + + +F+ I
Sbjct: 258 VSYEYSLVDGVNDTAACAKELSRLLKGKNCHVNLIPVNPIKE-RDYKRSTGNNIQNFKNI 316
Query: 242 LRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
L + I T+R++MG DI+ ACGQL + DK
Sbjct: 317 LEKN-RINVTIRREMGSDINAACGQLRKSYTDK 348
>gi|33151554|ref|NP_872907.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
ducreyi 35000HP]
gi|81423849|sp|Q7VNZ4.1|RLMN_HAEDU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|33147774|gb|AAP95296.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 393
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P G R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 119 PEGDRATLCVSSQVGCALECKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGITGVRP 178
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A++IM + +S +R+T+ST G+V A++ + +
Sbjct: 179 ITNVVMMGMGEPLLNMNNVIPAMQIMLDDFAYGLSKRRVTLSTAGVVPALDLMREKI-DV 237
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + ++ LM+++ +Y + K+ IEY++LD VND
Sbjct: 238 ALAISLHAPNNELRNEIMPINKKYNIKMLMDSVAKYLAVSNANHGKVTIEYVLLDHVNDG 297
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ +V FQK L Y VRK
Sbjct: 298 TEHAHQLAEVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVIVRKT 355
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 356 RGDDIDAACGQLAGEVIDR 374
>gi|395225716|ref|ZP_10404232.1| 23S rRNA m2A2503 methyltransferase [Thiovulum sp. ES]
gi|394446116|gb|EJF06961.1| 23S rRNA m2A2503 methyltransferase [Thiovulum sp. ES]
Length = 355
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 169/274 (61%), Gaps = 17/274 (6%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G VE V+++ + +G R T+C+S+QVGCK+GC+FC+T GF +LS
Sbjct: 80 EDGRTVETVLIKMRDEVFNEDGDILQQA-RYTICVSTQVGCKVGCSFCSTAKGGFVRDLS 138
Query: 64 SGEIVEQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPK 115
+ EIVEQ++ R I NVV+MGMGEPL+N+ +LV A+ I+ GL +SP+
Sbjct: 139 TAEIVEQVLAIKREQEIEYSRKGNVVYMGMGEPLDNFTSLVNAIAILKDENGLS--ISPR 196
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
R TVST GI I+K S G+++A+SLHA +VR +++P +AF ++ +++A+K +
Sbjct: 197 RQTVSTSGISTKIDKLGSLDLGVHIAISLHAVDDEVRTELIPMNKAFNIQSIISAVKRFP 256
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235
++++++ EY+M+ GVND + A +L KLLE + +NLI FNP S++ +++ +
Sbjct: 257 YDNRKRVMFEYLMIRGVNDSLESAKKLIKLLEGIKAKINLIYFNPHDG-SEYERPTEENM 315
Query: 236 SSFQKIL--RGSYNIRTTVRKQMGQDISGACGQL 267
F L RG + T+R G +IS ACGQL
Sbjct: 316 EKFADYLNRRG---LLATIRASRGVEISAACGQL 346
>gi|408674051|ref|YP_006873799.1| Ribosomal RNA large subunit methyltransferase N [Emticicia
oligotrophica DSM 17448]
gi|387855675|gb|AFK03772.1| Ribosomal RNA large subunit methyltransferase N [Emticicia
oligotrophica DSM 17448]
Length = 351
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 139/251 (55%), Gaps = 9/251 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN------IRN 82
P R T C+SSQVGC + C FCATG M K NL + EI +Q+V + + + N
Sbjct: 97 PADDRMTACVSSQVGCSLTCKFCATGYMARKRNLDAAEIYDQVVLIKQQAEEHYQQPLTN 156
Query: 83 VVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
+V+MGMGEPL NYA ++E+V RI + SPKRITVST GI I K D NLA
Sbjct: 157 IVYMGMGEPLLNYAGMMESVNRITSPDGLNWSPKRITVSTAGIAKMIQKLGDDEVKFNLA 216
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
+SLHA R +IMP + L+ L AL + K + +I EYI+ + ND Q A +
Sbjct: 217 LSLHAANDTKRNEIMPINESNSLQNLAAALNYFYKKTGNRITFEYIVFNDFNDSLQDAKE 276
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L + + VN+I +NPI + T ++DK+S F K L + VR+ G+DI
Sbjct: 277 LWEFTKKVPAKVNIIEYNPIAEANYINT-TEDKLSKFAKFLEDK-GVVVNVRRSRGKDID 334
Query: 262 GACGQLVVNLP 272
ACGQL + P
Sbjct: 335 AACGQLAIKEP 345
>gi|222529035|ref|YP_002572917.1| ribosomal RNA large subunit methyltransferase N
[Caldicellulosiruptor bescii DSM 6725]
gi|222455882|gb|ACM60144.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor bescii DSM
6725]
Length = 341
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 150/238 (63%), Gaps = 7/238 (2%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEP 91
+ +C+S+QVGCKM C FCA+ GF NLS+GE+V+Q+++ + I NVV MG GEP
Sbjct: 100 NAICVSTQVGCKMNCRFCASAIGGFVRNLSAGEMVDQIINVENFTGKRITNVVLMGSGEP 159
Query: 92 LNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPG-LNLAVSLHAPVQ 149
+N + + + I+ + + + IT+STVGIV I + D P +NLA+SLHAP
Sbjct: 160 FDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRL-CDFPKQVNLAISLHAPNN 218
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
+R +++P + +P+E +M A+ Y K + +++ EY ++DGVND + A +LGK+L+
Sbjct: 219 SLRDKLVPINKKYPVEDIMKAVDYYIKRTNRRVTFEYALIDGVNDSIECAQELGKMLKGK 278
Query: 210 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V VNLIP NP+ FR S +K+ F + L+ SY I T+R+++G IS ACGQL
Sbjct: 279 LVHVNLIPVNPVEE-KGFRRPSKEKIKVFFETLK-SYQINVTIRRELGSSISAACGQL 334
>gi|417839341|ref|ZP_12485528.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M19107]
gi|341953386|gb|EGT79893.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M19107]
Length = 383
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 108 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 167
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 168 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 226
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 227 ALAISLHAPNDELRDEIVPINKKYNIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDG 286
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 287 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIIRKT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 345 RGDDIDAACGQLAGDVIDR 363
>gi|374307506|ref|YP_005053937.1| radical SAM enzyme, Cfr family [Filifactor alocis ATCC 35896]
gi|291166481|gb|EFE28527.1| radical SAM enzyme, Cfr family [Filifactor alocis ATCC 35896]
Length = 345
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 163/266 (61%), Gaps = 19/266 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+M Y + GP ++C+S+QVGC+MGC FCA+ G NL+
Sbjct: 86 DGNLIETVLMIYKN------------GP--SICLSTQVGCRMGCKFCASTVDGLVRNLTP 131
Query: 65 GEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVST 121
GEI+ Q++ + I N+V MG GEP +N+ LV+ ++++ Q+ + IT+ST
Sbjct: 132 GEIIGQMITVQKDLGERIANIVIMGSGEPFDNFDNLVKFLKLVHEDYGLQIGYRHITIST 191
Query: 122 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181
G+V I + +NLA+SLH Q+ R +IMP A+ + +E+L+ A K Y ++++
Sbjct: 192 CGLVPKIREMEKLGIPINLAISLHQVEQNKREEIMPIAKVYDIEELIEAGKHYANVTKRR 251
Query: 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241
+ EY +++GV D + AH+LG LL+ ++NLIP NPI S F+ + +V +FQK+
Sbjct: 252 VTYEYALIEGVTDSLEEAHKLGSLLKGSLSLINLIPINPIKEKS-FKKPNLKRVQAFQKV 310
Query: 242 LRGSYNIRTTVRKQMGQDISGACGQL 267
L +Y+I TTVR+++G DI+GACGQL
Sbjct: 311 LL-NYHIITTVRRELGSDINGACGQL 335
>gi|153001521|ref|YP_001367202.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS185]
gi|205829879|sp|A6WQQ0.1|RLMN_SHEB8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|151366139|gb|ABS09139.1| radical SAM enzyme, Cfr family [Shewanella baltica OS185]
Length = 373
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+TG GF NL+ EIV Q+ S
Sbjct: 99 PEDDRATLCVSSQVGCALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGERP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D +
Sbjct: 159 ITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LAVS+HAP ++R ++P + +PL++ + ++ Y S + ++ +EY+MLD +ND
Sbjct: 218 ALAVSIHAPNDELRDILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDS 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AH+L KL++ +NLIPFNP S + SS+ ++ F K+L Y VRK
Sbjct: 278 TDQAHELAKLMKDTPCKINLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGFTVIVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 336 RGDDIDAACGQLAGDIRDR 354
>gi|170288910|ref|YP_001739148.1| ribosomal RNA large subunit methyltransferase N [Thermotoga sp.
RQ2]
gi|205829920|sp|B1LAW7.1|RLMN_THESQ RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|170176413|gb|ACB09465.1| radical SAM enzyme, Cfr family [Thermotoga sp. RQ2]
Length = 343
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 150/238 (63%), Gaps = 6/238 (2%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR--LSNIRNVVFMGMGE 90
R T CIS+QVGC + C FCATG GF NL++GEIV Q++ R I NVV+MGMGE
Sbjct: 100 RITACISTQVGCPVKCIFCATGMSGFVRNLTTGEIVAQILSMEREEKKKIGNVVYMGMGE 159
Query: 91 PLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 149
PL NY ++++RI+ + +RIT+STVGI I + + + LA+SLHAP
Sbjct: 160 PLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTN 219
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
R Q++P + + +E+++NA+K YQ+ + ++ IEY+++ G+NDE A +L ++L+
Sbjct: 220 FKRDQLVPLNKKYSIEEILNAVKIYQRKTGNRVTIEYVLIRGINDEISDAKKLAEILKNM 279
Query: 210 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ VNLIP NP + + S +++ +F++IL + I +R++ G DI ACGQL
Sbjct: 280 KIFVNLIPVNP--TAEDLKKPSRERLLAFKRILLEN-GIEAEIRREKGSDIEAACGQL 334
>gi|32035054|ref|ZP_00135120.1| COG0820: Predicted Fe-S-cluster redox enzyme [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208740|ref|YP_001053965.1| ribosomal RNA large subunit methyltransferase N [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|205829705|sp|A3N1S4.1|RLMN_ACTP2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|126097532|gb|ABN74360.1| hypothetical protein APL_1274 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 393
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 119 PEDDRATLCVSSQVGCALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGITGVRP 178
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ IM + +S +R+T+ST G+V A++ + +
Sbjct: 179 ITNVVMMGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKI-DV 237
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + ++ LM+++ +Y + S K+ IEY++LD VND
Sbjct: 238 ALAISLHAPNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDG 297
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ +V FQK L Y VRK
Sbjct: 298 TEHAHQLAEVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVIVRKT 355
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 356 RGDDIDAACGQLAGDVIDR 374
>gi|325568408|ref|ZP_08144775.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC
12755]
gi|325158177|gb|EGC70330.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC
12755]
Length = 361
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 104/275 (37%), Positives = 159/275 (57%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + + ++C+++QVGC +GC FCA+G + + +L++
Sbjct: 92 DNHMIETVLMRQEYGM--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTA 137
Query: 65 GEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEIV Q++ + RN VV MG+GEP +NY ++ ++I+ GL +
Sbjct: 138 GEIVAQIMLVQHYFDERNEGERVSHVVVMGIGEPFDNYDNVMHFLQIINDPKGLA--IGA 195
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+ H I +F + +NLA+SLHAP +VR +M R+FP+EKLM A+ Y
Sbjct: 196 RHITVSTSGLAHKIKEFAENGLQVNLAISLHAPNNEVRTSMMRINRSFPIEKLMAAVDYY 255
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + ++I EYIMLD VND +HA QL LL+ + + VNLIP+NP+ Q+ S
Sbjct: 256 LEKTNRRITFEYIMLDHVNDRPEHARQLAALLKDKKKLSYVNLIPYNPVSEHDQYARSKK 315
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V +F IL+ + I +RK+ G DI ACGQL
Sbjct: 316 ADVLAFYDILKKN-GINCVIRKEHGTDIDAACGQL 349
>gi|68248968|ref|YP_248080.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae 86-028NP]
gi|81336620|sp|Q4QNH7.1|RLMN_HAEI8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|68057167|gb|AAX87420.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae
86-028NP]
Length = 390
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 115 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 174
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 175 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 233
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 234 ALAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDG 293
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 294 IEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIIRKT 351
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 352 RGDDIDAACGQLAGDVIDR 370
>gi|147675306|ref|YP_001216242.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
O395]
gi|227117131|ref|YP_002819027.1| hypothetical protein VC395_0774 [Vibrio cholerae O395]
gi|262168795|ref|ZP_06036490.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC27]
gi|205829925|sp|A5F3F8.1|RLMN_VIBC3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146317189|gb|ABQ21728.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|227012581|gb|ACP08791.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|262022913|gb|EEY41619.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC27]
Length = 373
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R
Sbjct: 99 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V + + + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +IMP + +E + ++ Y +S + K+ +EY++LD VND
Sbjct: 218 ALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDG 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L +LL+ +NLIPFNP S ++ S+ ++ FQK L Y T+RK
Sbjct: 278 TEHAHELAELLKRTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|145628721|ref|ZP_01784521.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae
22.1-21]
gi|144979191|gb|EDJ88877.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae
22.1-21]
Length = 383
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 108 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 167
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 168 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 226
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 227 ALAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDG 286
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 287 IEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIIRKT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 345 RGDDIDAACGQLAGDVIDR 363
>gi|307246190|ref|ZP_07528272.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307255171|ref|ZP_07536989.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307259608|ref|ZP_07541333.1| hypothetical protein appser11_14070 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306853125|gb|EFM85348.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306862044|gb|EFM94020.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866544|gb|EFM98407.1| hypothetical protein appser11_14070 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 393
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 119 PEDDRATLCVSSQVGCALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 178
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ IM + +S +R+T+ST G+V A++ + +
Sbjct: 179 ITNVVMMGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKI-DV 237
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + ++ LM+++ +Y + S K+ IEY++LD VND
Sbjct: 238 ALAISLHAPNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDG 297
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ +V FQK L Y VRK
Sbjct: 298 TEHAHQLAEVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVIVRKT 355
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 356 RGDDIDAACGQLAGDVIDR 374
>gi|317049139|ref|YP_004116787.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b]
gi|316950756|gb|ADU70231.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b]
Length = 389
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 149/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 115 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 174
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 175 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 233
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R I+P + + +E + A+K Y S Q ++ IEY++LD VND
Sbjct: 234 ALAISLHAPNDKLRDDIVPINKKYNIETFLAAVKRYLAKSNANQGRVTIEYVLLDHVNDS 293
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AHQL +LL+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 294 TDDAHQLAELLKDTPSKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 351
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 352 RGDDIDAACGQLAGDVIDR 370
>gi|145638726|ref|ZP_01794335.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae PittII]
gi|145272321|gb|EDK12229.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae PittII]
Length = 383
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 108 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 167
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 168 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 226
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 227 ALAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDG 286
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 287 VEHAHQLAEVLNNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIIRKT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 345 RGDDIDAACGQLAGDVIDR 363
>gi|257867066|ref|ZP_05646719.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC30]
gi|257873401|ref|ZP_05653054.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC10]
gi|257877144|ref|ZP_05656797.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC20]
gi|257801122|gb|EEV30052.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC30]
gi|257807565|gb|EEV36387.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC10]
gi|257811310|gb|EEV40130.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC20]
Length = 361
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 104/275 (37%), Positives = 159/275 (57%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + + ++C+++QVGC +GC FCA+G + + +L++
Sbjct: 92 DNHMIETVLMRQEYGM--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTA 137
Query: 65 GEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEIV Q++ + RN VV MG+GEP +NY ++ ++I+ GL +
Sbjct: 138 GEIVAQIMLVQHYFDERNEGERVSHVVVMGIGEPFDNYDNVMHFLQIINDPKGLA--IGA 195
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+ H I +F + +NLA+SLHAP +VR +M R+FP+EKLM A+ Y
Sbjct: 196 RHITVSTSGLAHKIREFAENGLQVNLAISLHAPNNEVRTSMMRINRSFPIEKLMAAVDYY 255
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + ++I EYIMLD VND +HA QL LL+ + + VNLIP+NP+ Q+ S
Sbjct: 256 LEKTNRRITFEYIMLDHVNDRPEHARQLAALLKDKKKLSYVNLIPYNPVSEHDQYARSKK 315
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
V +F IL+ + I +RK+ G DI ACGQL
Sbjct: 316 ADVLAFYDILKKN-GINCVIRKEHGTDIDAACGQL 349
>gi|440231978|ref|YP_007345771.1| 23S rRNA m(2)A-2503 methyltransferase [Serratia marcescens FGI94]
gi|440053683|gb|AGB83586.1| 23S rRNA m(2)A-2503 methyltransferase [Serratia marcescens FGI94]
Length = 398
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 148/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PEADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKVTGQRP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP VR +I+P R + +E + ++ Y S Q ++ +EY+MLD VND
Sbjct: 243 ALAISLHAPNDAVRDEIVPINRKYNIEAFLAGVRRYLAKSNANQGRVTVEYVMLDHVNDS 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AHQL ++L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TDDAHQLAEVLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVIDR 379
>gi|348028465|ref|YP_004871151.1| ribosomal RNA large subunit methyltransferase N [Glaciecola
nitratireducens FR1064]
gi|347945808|gb|AEP29158.1| ribosomal RNA large subunit methyltransferase N [Glaciecola
nitratireducens FR1064]
Length = 393
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 149/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NLS EI+ Q+ +
Sbjct: 118 PETDRATLCVSSQVGCALECTFCSTAQQGFNRNLSIAEIIGQVWRVATFIGMSKDTSKRP 177
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+RIM F +S +R+T+ST G+V A++ D +
Sbjct: 178 ITNVVMMGMGEPLLNLKNVVPAMRIMLDDYGFGLSKRRVTLSTSGVVPALDML-GDQIDV 236
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + +P+E+ + ++ Y K +Q K+ +EY+ML+ +ND
Sbjct: 237 ALAISLHAPDDKLRDEIVPVNKKYPIEEFLAGVRRYLAKSKANQGKVTVEYVMLNHINDS 296
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AH L K+L +NLIPFNP S + SS+ ++ F K+L YN +RK
Sbjct: 297 TDQAHALAKVLADTPCKINLIPFNPYPG-SPYTCSSNSRMDRFSKVLM-DYNFTVVIRKT 354
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 355 RGDDIDAACGQLVGDVVDR 373
>gi|307250523|ref|ZP_07532468.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307257327|ref|ZP_07539097.1| hypothetical protein appser10_13250 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306857465|gb|EFM89576.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306864177|gb|EFM96090.1| hypothetical protein appser10_13250 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 393
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 119 PEDDRATLCVSSQVGCALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGITGVRP 178
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ IM + +S +R+T+ST G+V A++ + +
Sbjct: 179 ITNVVMMGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKI-DV 237
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + ++ LM+++ +Y + S K+ IEY++LD VND
Sbjct: 238 ALAISLHAPNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDG 297
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ +V FQK L Y VRK
Sbjct: 298 TEHAHQLAEVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVIVRKT 355
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 356 RGDDIDAACGQLAGDVIDR 374
>gi|421495456|ref|ZP_15942739.1| ribosomal RNA large subunit methyltransferase N [Aeromonas media
WS]
gi|407185531|gb|EKE59305.1| ribosomal RNA large subunit methyltransferase N [Aeromonas media
WS]
Length = 374
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 149/254 (58%), Gaps = 11/254 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----IRNVV 84
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++ I NVV
Sbjct: 105 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLKVSEIIGQVWRAAKVVGGKRPITNVV 164
Query: 85 FMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N A +V A+ + M F +S +R+T+ST G+V A++ D + LA+S
Sbjct: 165 MMGMGEPLLNLANVVPAMSLMMDDFGFGISKRRVTLSTSGVVPALDML-GDQIDVALAIS 223
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAH 200
LHAP +R +IMP + +E + ++ Y S ++ +EY++LD +ND+ QHAH
Sbjct: 224 LHAPNDKLRSEIMPINDKYNIEAFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAH 283
Query: 201 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
+L ++L+ VNLIPFNP + F S+ ++ F K+L Y + VRK G DI
Sbjct: 284 ELAQVLKDTPCKVNLIPFNPFPG-NPFGKPSNSRIDRFSKVLM-EYGMTVIVRKTRGDDI 341
Query: 261 SGACGQLVVNLPDK 274
ACGQLV + D+
Sbjct: 342 DAACGQLVGEVIDR 355
>gi|165976692|ref|YP_001652285.1| ribosomal RNA large subunit methyltransferase N [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|303250645|ref|ZP_07336842.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252906|ref|ZP_07534795.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307261750|ref|ZP_07543416.1| hypothetical protein appser12_13090 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307263937|ref|ZP_07545541.1| hypothetical protein appser13_13460 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|205829706|sp|B0BQK6.1|RLMN_ACTPJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|165876793|gb|ABY69841.1| hypothetical protein APJL_1285 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|302650633|gb|EFL80792.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306859695|gb|EFM91719.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306868568|gb|EFN00379.1| hypothetical protein appser12_13090 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306870802|gb|EFN02542.1| hypothetical protein appser13_13460 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 393
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 119 PEDDRATLCVSSQVGCALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 178
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ IM + +S +R+T+ST G+V A++ + +
Sbjct: 179 ITNVVMMGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKI-DV 237
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + ++ LM+++ +Y + S K+ IEY++LD VND
Sbjct: 238 ALAISLHAPNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDG 297
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ +V FQK L Y VRK
Sbjct: 298 TEHAHQLAEVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVIVRKT 355
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 356 RGDDIDAACGQLAGDVIDR 374
>gi|260584540|ref|ZP_05852286.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633]
gi|260157563|gb|EEW92633.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633]
Length = 375
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 150/245 (61%), Gaps = 15/245 (6%)
Query: 35 TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMG 87
++C+++QVGC +GC FCA+G + + +L +GEIV Q++H R + ++V MG
Sbjct: 115 SICVTTQVGCNIGCTFCASGIIAKQRDLVAGEIVAQVMHVQRTLDEVAPGDRVSHIVVMG 174
Query: 88 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
+GEP +NY +++ ++++ TGL + + ITVST G+ I F + +NLA+SL
Sbjct: 175 IGEPFDNYDNVIKFLKVVNSDTGLA--IGARHITVSTSGLAPKILDFAKEGLQVNLALSL 232
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
HAP D R +IM R +P+E +M A+ EY + + +++ EYIMLD VND + A QL
Sbjct: 233 HAPDNDTRSKIMRINRKYPIEVVMEAINEYIRTTNRRVTFEYIMLDHVNDSVEQAQQLAD 292
Query: 205 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
LL + + VNLIP+N + Q+ SS D+V +F +L+ ++ I VRK+ G DI
Sbjct: 293 LLADKKRLSYVNLIPYNKVREHDQYERSSKDRVVAFYDVLKKNH-INCVVRKEFGHDIEA 351
Query: 263 ACGQL 267
ACGQL
Sbjct: 352 ACGQL 356
>gi|154250366|ref|YP_001411191.1| ribosomal RNA large subunit methyltransferase N [Fervidobacterium
nodosum Rt17-B1]
gi|205829758|sp|A7HNQ1.1|RLMN_FERNB RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|154154302|gb|ABS61534.1| radical SAM enzyme, Cfr family [Fervidobacterium nodosum Rt17-B1]
Length = 348
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 147/240 (61%), Gaps = 6/240 (2%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV--HASRLSNIRNVVFMGMGE 90
R T CIS+QVGC C FCATG GF NLS+GEIV Q++ R NI N+V+MGMGE
Sbjct: 101 RVTACISTQVGCPAKCAFCATGQSGFVRNLSAGEIVSQIIAMEKHRKVNIGNIVYMGMGE 160
Query: 91 PLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 149
PL NY +V++V+++ + +S +RI++STVGI I + DLP + LA+SLHAP
Sbjct: 161 PLLNYKEVVKSVKMLNHKKGKNISMRRISISTVGIPEKIVELAQDLPEVKLAISLHAPNN 220
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
R I+P + + +E+++ + KEYQK ++ ++ EYI++ ND A +L +LL+
Sbjct: 221 YKRDIIVPMNKKYSVEEIIQSAKEYQKITKNRVTFEYILIREFNDFVDDAEKLAELLKGM 280
Query: 210 QVVVNLIPFNPIGSVSQ--FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLIP NP+ S + F + F+++L +NI +R++ G DI ACGQL
Sbjct: 281 GAYVNLIPVNPVPSSGELKFERPHHWAIERFKEVL-DKHNIENEIRREKGTDIDAACGQL 339
>gi|423302059|ref|ZP_17280082.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
finegoldii CL09T03C10]
gi|408471150|gb|EKJ89682.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
finegoldii CL09T03C10]
Length = 336
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 147/240 (61%), Gaps = 4/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLC+SSQVGCKM C FC TG GF +NL++ +I+ Q+ + NVV MGM
Sbjct: 89 PDDDRATLCVSSQVGCKMNCKFCMTGKQGFTANLTANQIINQIHSLPERDKLTNVVMMGM 148
Query: 89 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEPL+N +++A+ ++T + SPKRIT+STVG+ + +F + +LA+SLH+P
Sbjct: 149 GEPLDNLDEVLKALEVLTASYGYAWSPKRITLSTVGLRKGLRRFIEE-SDCHLAISLHSP 207
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
V R ++MPA +AF + +++ LK Y + Q+++ EYI+ G+ND + +A +L KLL
Sbjct: 208 VAAQRSELMPAEKAFSITEMVELLKNYDFSKQRRLSFEYIVFKGLNDSQIYAKELLKLLR 267
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+NLI F+ I V + D ++ F+ L S+ + TT+R G+DI ACG L
Sbjct: 268 GLDCRINLIRFHAIPGVD-LEGADVDTMTRFRDYL-TSHGLFTTIRASRGEDIFAACGML 325
>gi|374317036|ref|YP_005063464.1| 2-vinyl bacteriochlorophyllide hydratase [Sphaerochaeta pleomorpha
str. Grapes]
gi|359352680|gb|AEV30454.1| 23S rRNA m2A2503 methyltransferase [Sphaerochaeta pleomorpha str.
Grapes]
Length = 358
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 144/242 (59%), Gaps = 5/242 (2%)
Query: 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--IRNVVFMGMGE 90
R T C+SSQVGC MGC FC TGTMG K NL++ EI+EQ +H +R+S+ I ++V+MGMGE
Sbjct: 105 RHTACLSSQVGCAMGCTFCRTGTMGLKRNLTAEEIIEQYIHLTRVSDEPITHIVYMGMGE 164
Query: 91 PLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 149
PL N A + ++R F +S +RIT+ST G+V I K + LAVSL +
Sbjct: 165 PLANIAPVTRSIRYFHEENGFNISLRRITISTCGVVPGILKLSEQKLPVKLAVSLVSADN 224
Query: 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209
R ++MP + L +L AL YQ+ ++ +EY +L VN +E A +L +
Sbjct: 225 RTRSRVMPINETWDLPELKKALLRYQRTGGKRFTLEYCLLHNVNTDESAAKKLATYVREM 284
Query: 210 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
VVVNLIP+NP + + T S+ ++ SF L NI+ T R G++I+GACGQL V
Sbjct: 285 DVVVNLIPWNPAEGLP-YETPSEQEIDSFAHYL-DRMNIKFTRRYSRGREINGACGQLAV 342
Query: 270 NL 271
L
Sbjct: 343 PL 344
>gi|356551739|ref|XP_003544231.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
[Glycine max]
Length = 416
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 168/292 (57%), Gaps = 16/292 (5%)
Query: 7 GFVEAVIMRYDSSLGKYNGKP---RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
G V+ ++ D+ L + G P G R T C+SSQVGC + C+FCATG GF NL
Sbjct: 119 GTVKLLLKLEDNRLVETVGIPVMVDKGLTRLTACVSSQVGCPLRCSFCATGKGGFSRNLQ 178
Query: 64 SGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVST 121
EI+EQ++ + + + NVVFMGMGEP+ N A++EA R + Q+ + IT+ST
Sbjct: 179 RHEIIEQVLAIEEVFKNRVTNVVFMGMGEPMLNLKAVLEAHRCLNK-DVQIGQRMITIST 237
Query: 122 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181
VG+ + I K S LAVSLHAP Q +R I+P+A+++PL+ LM+ +EY + + ++
Sbjct: 238 VGVPNTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLDALMSDCREYFQQTSRR 297
Query: 182 IFIEYIMLDGVNDEEQHAHQLGKLLET--FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 239
+ EY +L GVND HA +L +LL VNLIPFNPI S+++ S V +F
Sbjct: 298 VSFEYALLAGVNDSVDHALELAELLHRSGSGYHVNLIPFNPIEG-SEYQRPSKRAVLTFS 356
Query: 240 KILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCI 291
L S I +VR+ G D + ACGQL + + TP VTD DL +
Sbjct: 357 GALESS-KITVSVRQTRGLDANAACGQL------RNKFQKTPLVTDPFDLAV 401
>gi|378696548|ref|YP_005178506.1| hypothetical protein HIB_04760 [Haemophilus influenzae 10810]
gi|301169067|emb|CBW28664.1| predicted enzyme [Haemophilus influenzae 10810]
Length = 383
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 108 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGITGVRP 167
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 168 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 226
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 227 ALAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDG 286
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 287 VEHAHQLAEVLNNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIIRKT 344
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 345 RGDDIDAACGQLAGDVIDR 363
>gi|418357099|ref|ZP_12959803.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
salmonicida subsp. salmonicida 01-B526]
gi|356689895|gb|EHI54429.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
salmonicida subsp. salmonicida 01-B526]
Length = 367
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 149/254 (58%), Gaps = 11/254 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----IRNVV 84
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++ I NVV
Sbjct: 98 PEEDRATLCVSSQVGCALACKFCSTAQQGFNRNLKVSEIIGQVWRAAKIVGGKRPITNVV 157
Query: 85 FMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N A ++ A+R+ M + +S +R+T+ST G+V A++ D + LA+S
Sbjct: 158 MMGMGEPLLNLANVIPAMRLMMDDFGYGISKRRVTISTSGVVPALDIL-GDQIDVALAIS 216
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAH 200
LHAP +R +IMP + +E + ++ Y S ++ +EY++LD +ND+ QHAH
Sbjct: 217 LHAPNDKLRSEIMPINDKYNIEDFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAH 276
Query: 201 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
+L K+L+ +NLIPFNP + + S+ ++ F K+L Y VRK G DI
Sbjct: 277 ELAKVLKDTPSKINLIPFNPFPG-NPYGKPSNSRIDRFSKVLM-EYGFTVIVRKTRGDDI 334
Query: 261 SGACGQLVVNLPDK 274
ACGQLV + D+
Sbjct: 335 DAACGQLVGEVIDR 348
>gi|226328008|ref|ZP_03803526.1| hypothetical protein PROPEN_01899 [Proteus penneri ATCC 35198]
gi|225203712|gb|EEG86066.1| 23S rRNA m2A2503 methyltransferase [Proteus penneri ATCC 35198]
Length = 357
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 149/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 83 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAKIIGSLKETGRRP 142
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ I M F +S +R+TVST G+V A++K +D +
Sbjct: 143 ITNVVMMGMGEPLLNLNNVIPALEIMMDDFGFGLSKRRVTVSTSGVVPALDKL-ADAVDV 201
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R +I+P + + + + ++ Y S Q ++ +EY+MLD +ND
Sbjct: 202 ALAISLHAPTDDIRDEIVPINKKYNIAMFLEGVRRYIAKSNANQGRVTVEYVMLDHINDS 261
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+ AHQL + L+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 262 TEQAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKT 319
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 320 RGDDIDAACGQLAGDVIDR 338
>gi|302389594|ref|YP_003825415.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani
DSM 16646]
gi|302200222|gb|ADL07792.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani
DSM 16646]
Length = 346
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 147/236 (62%), Gaps = 5/236 (2%)
Query: 35 TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGEPL 92
++C+SSQVGC MGC FCA+ G K +L+SGE+V+Q+ + I +VV MG GEPL
Sbjct: 103 SVCVSSQVGCAMGCAFCASTIDGLKRSLNSGEMVDQILVIQEDIKKRISHVVIMGSGEPL 162
Query: 93 NNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 151
NY L++ + I+ L F +S +RITVST GIV I + + + L+VSLHAP D+
Sbjct: 163 LNYDELIKFLNIINSPLAFNISYRRITVSTCGIVPEIRRLADEGLPITLSVSLHAPEDDL 222
Query: 152 RCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 211
R +++P R +P+ +L++A K Y + ++I EY ++ VND ++ A +L +LL+
Sbjct: 223 RDKLVPVNRRYPILELLDACKYYIIKTNRRITFEYALISDVNDSKECAVKLARLLKGLLC 282
Query: 212 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
VNLIP NP+ F S + + FQ+ILR Y I TVR++MG DI ACGQL
Sbjct: 283 HVNLIPLNPVRE-RDFMRSKPENIRLFQEILR-HYGISVTVRQEMGADIEAACGQL 336
>gi|309750216|gb|ADO80200.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus
influenzae R2866]
Length = 390
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 115 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 174
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 175 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 233
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 234 ALAISLHAPNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDG 293
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 294 VEHAHQLAEVLNNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIIRKT 351
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 352 RGDDIDAACGQLAGDVIDR 370
>gi|456063410|ref|YP_007502380.1| radical SAM protein [beta proteobacterium CB]
gi|455440707|gb|AGG33645.1| radical SAM protein [beta proteobacterium CB]
Length = 397
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 111/276 (40%), Positives = 152/276 (55%), Gaps = 28/276 (10%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLCISSQ GC + C FC+TG GF NL++GEI+ QL A L
Sbjct: 84 PEDDRGTLCISSQAGCAVNCRFCSTGHQGFSRNLTAGEIIGQLWFAEHLLRTDPNAVRRI 143
Query: 80 --------------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGI 124
I NVV MGMGEPL NY +V A+R+M + +S +R+TVST G+
Sbjct: 144 EKYPTPGWEHTGRVISNVVLMGMGEPLLNYDNVVTALRLMLDDRAYGLSRRRVTVSTSGV 203
Query: 125 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF- 183
V I++ D P + LAVSLHAP +R Q++P + +PL +L+ A + Y + +
Sbjct: 204 VPMIDRLAQDCP-VALAVSLHAPNDKLRDQLVPLNQKYPLRELLAACERYLPFAPRDFLT 262
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
EY MLDGVND + A +L +LL + +NLIPFNP S + SS +V +F IL
Sbjct: 263 FEYCMLDGVNDSDIQAKELVRLLANIKCKINLIPFNPFPE-SGLKRSSAQRVHAFASILL 321
Query: 244 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 279
+ + TVRK G DI+ ACGQL ++ D+ +
Sbjct: 322 DAGMV-ATVRKTRGDDIAAACGQLAGDVVDRTRVRE 356
>gi|325280884|ref|YP_004253426.1| Ribosomal RNA large subunit methyltransferase N [Odoribacter
splanchnicus DSM 20712]
gi|324312693|gb|ADY33246.1| Ribosomal RNA large subunit methyltransferase N [Odoribacter
splanchnicus DSM 20712]
Length = 351
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 101/246 (41%), Positives = 145/246 (58%), Gaps = 8/246 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-----IRNV 83
PG + T+C+SSQVGC++GC FCATGT+GFK NL++GEI EQ+V A + + + N+
Sbjct: 101 PGNQKFTVCVSSQVGCQLGCKFCATGTLGFKRNLTAGEIFEQVVRAQQAAEAQGQPLSNI 160
Query: 84 VFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 142
VFMGMGEPL NY ++ A+ RI +SP RITVST GI I + D NLA+
Sbjct: 161 VFMGMGEPLLNYEQVLRAIERITAQDGLAMSPYRITVSTAGIPEKIRQLADDGVRFNLAL 220
Query: 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 202
SLHA + R +MP +A+PL ++ +LK + + + + EY++L +ND + A L
Sbjct: 221 SLHAAKETTRTFLMPVNKAYPLSEIAGSLKYFVEKTGTRPTFEYLLLKDINDSLEDAKAL 280
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
F + +N+I +N + S F S D +F + L G N+ VR+ G+DI
Sbjct: 281 ALYCRQFPIKINIIEYNNVEG-SGFHHSPDKNRDAFIRFLEGC-NMVVNVRRSKGKDIDA 338
Query: 263 ACGQLV 268
ACGQL
Sbjct: 339 ACGQLA 344
>gi|255693933|ref|ZP_05417608.1| radical SAM enzyme, Cfr family [Bacteroides finegoldii DSM 17565]
gi|260620244|gb|EEX43115.1| 23S rRNA m2A2503 methyltransferase [Bacteroides finegoldii DSM
17565]
Length = 344
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 148/240 (61%), Gaps = 4/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLC+SSQVGCKM C FC TG GF +NL++ +I+ Q+ + NVV MGM
Sbjct: 97 PDDDRATLCVSSQVGCKMNCKFCMTGKQGFTANLTANQIINQIHSLPERDKLTNVVMMGM 156
Query: 89 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEPL+N +++A+ ++T + SPKRIT+STVG+ + +F + +LA+SLH+P
Sbjct: 157 GEPLDNLDEVLKALEVLTAPYGYAWSPKRITLSTVGLRKGLRRFIEE-SDCHLAISLHSP 215
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
V R ++MPA +AF + +++ LK Y + Q+++ EYI+ G+ND + +A +L KLL
Sbjct: 216 VAAQRSELMPAEKAFSITEMVELLKNYDFSKQRRLSFEYIVFKGLNDSQIYAKELLKLLR 275
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+NLI F+ I V+ + D ++ F+ L S+ + TT+R G+DI ACG L
Sbjct: 276 GLDCRINLIRFHAIPGVN-LEGADMDTMTRFRDYL-TSHGLFTTIRASRGEDIFAACGML 333
>gi|218261353|ref|ZP_03476207.1| hypothetical protein PRABACTJOHN_01873 [Parabacteroides johnsonii
DSM 18315]
gi|218224074|gb|EEC96724.1| hypothetical protein PRABACTJOHN_01873 [Parabacteroides johnsonii
DSM 18315]
Length = 343
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 148/263 (56%), Gaps = 18/263 (6%)
Query: 6 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
G FVE+V + P R+TLC+SSQVGCKM C FC TG GF NLS+
Sbjct: 89 GNFVESVYI--------------PTEDRATLCVSSQVGCKMNCLFCMTGKQGFTKNLSAN 134
Query: 66 EIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGI 124
EI+ Q+ + N+VFMGMGEPL+N L + + I+T + SPKRITVST+G+
Sbjct: 135 EILNQIQSLPETEELTNIVFMGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGV 194
Query: 125 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 184
+ +F + +LAVSLH+P R +MP +AFP ++ +K+Y Q++I
Sbjct: 195 AKGLKRFLEE-SECHLAVSLHSPYPGERLSLMPVEKAFPARDIIETIKQYDFTHQRRISF 253
Query: 185 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 244
EYI+ +ND+ QHA L LL+ VNLI F+ I +VS +S ++ +F+ L
Sbjct: 254 EYIVFKNLNDDLQHAKALVCLLDKVPCRVNLIRFHAIPNVS-LESSDLARMEAFRDTLNA 312
Query: 245 SYNIRTTVRKQMGQDISGACGQL 267
+ I T+R G+DI ACG L
Sbjct: 313 A-GIVCTIRASRGEDIFAACGML 334
>gi|149908872|ref|ZP_01897532.1| Hypothetical protein yfgB [Moritella sp. PE36]
gi|149808146|gb|EDM68087.1| Hypothetical protein yfgB [Moritella sp. PE36]
Length = 371
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 151/257 (58%), Gaps = 14/257 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------SNIR 81
P G R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ AS++ I
Sbjct: 98 PDGDRATLCVSSQVGCALECTFCSTAQQGFNRNLRVSEIIGQVWRASQVIGFNNKKRAIT 157
Query: 82 NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 140
NVV MGMGEPL N LV A+ IM F +S +R+TVST G+V A++K +D + L
Sbjct: 158 NVVMMGMGEPLLNMTNLVPALNIMLDDYGFGLSKRRVTVSTSGVVPALDKL-ADSIDVAL 216
Query: 141 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQ 197
A+SLHA +R +++P + + +E L+ ++K Y S ++K+ IEY++LD VND
Sbjct: 217 AISLHASNDTLRDELVPINKKYNIEMLLASVKNYIGKSNANRKKVTIEYVLLDHVNDSTD 276
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
AH+L LL+ +NLIPFNP S + S+ ++ F K+L Y T+RK G
Sbjct: 277 QAHELAHLLKDTPCKINLIPFNPFPG-SDYGKPSNSRIDRFNKVLM-EYENTVTIRKTRG 334
Query: 258 QDISGACGQLVVNLPDK 274
DI ACGQL ++ D+
Sbjct: 335 DDIDAACGQLAGDVIDR 351
>gi|146283364|ref|YP_001173517.1| radical SAM protein [Pseudomonas stutzeri A1501]
gi|145571569|gb|ABP80675.1| radical SAM enzyme, Cfr family [Pseudomonas stutzeri A1501]
Length = 347
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 160/259 (61%), Gaps = 17/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R TLC+SSQ GC + C+FC+TG GF SNL++ E++ Q+ A++
Sbjct: 66 PQGGRGTLCVSSQAGCALDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPAKIDRA 125
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A++I M L + +S +++T+ST G+V I++ + + +
Sbjct: 126 ITNVVMMGMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTLSTSGVVPMIDEL-AKVIDV 184
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEE 196
+LA+SLHAP + +R Q++P + +PL+ L+ A K Y +K + IEY +L GVND+
Sbjct: 185 SLALSLHAPNEALRDQLVPINKKYPLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQP 244
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQ 255
+HA Q+ LL +NLIPFNP S + S++ + FQ IL +G +N+ TVR
Sbjct: 245 EHAEQMIALLADIPCKINLIPFNPFPH-SGYERPSNNAIRRFQDILHKGGHNV--TVRTT 301
Query: 256 MGQDISGACGQLVVNLPDK 274
G+DI ACGQLV + D+
Sbjct: 302 RGEDIDAACGQLVGQVLDR 320
>gi|374596886|ref|ZP_09669890.1| 23S rRNA m(2)A-2503 methyltransferase [Gillisia limnaea DSM 15749]
gi|373871525|gb|EHQ03523.1| 23S rRNA m(2)A-2503 methyltransferase [Gillisia limnaea DSM 15749]
Length = 347
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 147/246 (59%), Gaps = 9/246 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV---HASRL---SNIRN 82
P R+T C+SSQVGC + C FCAT T+ NL+ EI +Q+V + SRL + N
Sbjct: 99 PTPKRTTACVSSQVGCSLDCKFCATATLKRMRNLNPDEIYDQVVAIDNESRLYFDKPLSN 158
Query: 83 VVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
+VFMGMGEPL NY +++AV +I + +SPKRIT+ST G+ I K D + LA
Sbjct: 159 IVFMGMGEPLMNYNNVMKAVEKITSKDGLGMSPKRITISTSGVPKMIKKLADDEAKIKLA 218
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
VSLH+ + ++R QIMP FPL+ L AL+ + ++ +I EYI+ +G+ND+ + A
Sbjct: 219 VSLHSAIDEIRTQIMPFNATFPLQDLREALEYWYAKTKSRITYEYIVWEGINDKPKDAEA 278
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L + + VNLI +NPI QF+ +S ++K+L + I TVR+ G+DI
Sbjct: 279 LVRFCKYVPCKVNLIEYNPIDD-GQFQQASSQATHMYEKMLEQN-GITVTVRRSRGKDID 336
Query: 262 GACGQL 267
ACGQL
Sbjct: 337 AACGQL 342
>gi|261212143|ref|ZP_05926429.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
gi|260838751|gb|EEX65402.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
Length = 373
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R
Sbjct: 99 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V + + + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R QIMP + +++ + ++ Y +S + K+ +EY++LD VND
Sbjct: 218 ALAISLHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDG 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L +L++ +NLIPFNP S ++ S+ ++ FQK L Y T+RK
Sbjct: 278 TEHAHELAELMKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKT 335
Query: 256 MGQDISGACGQLVVNLPDKISAKST 280
G DI ACGQLV ++ D+ T
Sbjct: 336 RGDDIDAACGQLVGDVIDRTKRTKT 360
>gi|145299533|ref|YP_001142374.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
salmonicida subsp. salmonicida A449]
gi|205829709|sp|A4SP04.1|RLMN_AERS4 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|142852305|gb|ABO90626.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 368
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 149/254 (58%), Gaps = 11/254 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----IRNVV 84
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++ I NVV
Sbjct: 99 PEEDRATLCVSSQVGCALACKFCSTAQQGFNRNLKVSEIIGQVWRAAKIVGGKRPITNVV 158
Query: 85 FMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N A ++ A+R+ M + +S +R+T+ST G+V A++ D + LA+S
Sbjct: 159 MMGMGEPLLNLANVIPAMRLMMDDFGYGISKRRVTISTSGVVPALDIL-GDQIDVALAIS 217
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAH 200
LHAP +R +IMP + +E + ++ Y S ++ +EY++LD +ND+ QHAH
Sbjct: 218 LHAPNDKLRSEIMPINDKYNIEDFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAH 277
Query: 201 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
+L K+L+ +NLIPFNP + + S+ ++ F K+L Y VRK G DI
Sbjct: 278 ELAKVLKDTPSKINLIPFNPFPG-NPYGKPSNSRIDRFSKVLM-EYGFTVIVRKTRGDDI 335
Query: 261 SGACGQLVVNLPDK 274
ACGQLV + D+
Sbjct: 336 DAACGQLVGEVIDR 349
>gi|398795004|ref|ZP_10554946.1| 23S rRNA methyltransferase [Pantoea sp. YR343]
gi|398797058|ref|ZP_10556384.1| 23S rRNA methyltransferase [Pantoea sp. GM01]
gi|398103873|gb|EJL94034.1| 23S rRNA methyltransferase [Pantoea sp. GM01]
gi|398207283|gb|EJM94033.1| 23S rRNA methyltransferase [Pantoea sp. YR343]
Length = 389
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 115 PEADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKITGQRP 174
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 175 ITNVVMMGMGEPLLNLNNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 233
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + + +E + A+K Y + N+ Q ++ IEY+MLD VND
Sbjct: 234 ALAISLHAPNDAIRDEIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVMLDHVNDS 293
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+AH+L LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 294 TDNAHELAALLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-DYGFTTIVRKT 351
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 352 RGDDIDAACGQLAGDVIDR 370
>gi|167854516|ref|ZP_02477297.1| hypothetical protein HPS_02019 [Haemophilus parasuis 29755]
gi|167854271|gb|EDS25504.1| hypothetical protein HPS_02019 [Haemophilus parasuis 29755]
Length = 386
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 157/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------SNIR- 81
P R+TLC+SSQVGC + C FC+T GF NLS EI+ Q+ AS++ + IR
Sbjct: 112 PEDDRATLCVSSQVGCALACTFCSTAQQGFNRNLSVSEIIGQVWRASKIIGNFGVTGIRP 171
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N ++ A+ IM + +S +R+T+ST G+V A++K + +
Sbjct: 172 ITNVVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQI-DV 230
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +++P + + ++ L++++ +Y + S K+ IEY+ML VND+
Sbjct: 231 ALAISLHAPNDELRNELIPLNKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLSHVNDD 290
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +L+ +NLIP+NP + + SS+ ++ FQK L Y TVRK
Sbjct: 291 VEHAHQLADVLKNTPSKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVTVRKT 348
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 349 RGDDIHAACGQLAGDVIDR 367
>gi|39996213|ref|NP_952164.1| ribosomal RNA large subunit methyltransferase N [Geobacter
sulfurreducens PCA]
gi|409911654|ref|YP_006890119.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter
sulfurreducens KN400]
gi|81702805|sp|Q74E53.1|RLMN_GEOSL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|39982978|gb|AAR34437.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter
sulfurreducens PCA]
gi|307634805|gb|ADI83948.2| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter
sulfurreducens KN400]
Length = 360
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 142/242 (58%), Gaps = 8/242 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLCISSQVGC M C FC TGT NL++ EIV Q+ R +RN+VFMGM
Sbjct: 98 PEEDRNTLCISSQVGCAMACEFCLTGTFRLTRNLTTAEIVNQVCAVQRDVPVRNIVFMGM 157
Query: 89 GEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GEPL N ++ A++IM GL F S +RITVST G+V + + + +NLAVSL+
Sbjct: 158 GEPLANLDNVIRALQIMLHDDGLQF--STRRITVSTAGLVPEMERLGRSVT-VNLAVSLN 214
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 205
A ++R +IMP R +PL L++A + + ++KI IEY++L GVND A +L +L
Sbjct: 215 ATTDELRDRIMPINRKYPLAVLLDACRRFPLPGRRKITIEYVLLGGVNDTLDDAKRLVRL 274
Query: 206 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 265
L +NLIPFN S FR+ S D + F + L + R G DIS ACG
Sbjct: 275 LSDIPSKINLIPFNEHEGCS-FRSPSQDAIDRFHRYLLDKH-FTVITRSSRGADISAACG 332
Query: 266 QL 267
QL
Sbjct: 333 QL 334
>gi|119510469|ref|ZP_01629602.1| hypothetical protein N9414_01747 [Nodularia spumigena CCY9414]
gi|119464891|gb|EAW45795.1| hypothetical protein N9414_01747 [Nodularia spumigena CCY9414]
Length = 352
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 148/241 (61%), Gaps = 5/241 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFM 86
P R T+C+S+QVGC M C+FCATG GF NL+ EIV+Q+ V + +VV+M
Sbjct: 111 PTAKRLTVCVSTQVGCPMACDFCATGKGGFTRNLARHEIVDQVLTVQEDFQQRVSHVVYM 170
Query: 87 GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
GMGEPL N ++++++ + + + +TVSTVGI I + + LAVSLHA
Sbjct: 171 GMGEPLLNTENVLKSLKSLNQ-DVGIGQRSLTVSTVGIRDRIRQLAQHNLQVTLAVSLHA 229
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
P Q +R +++P+AR +PLE L++ +EY + ++++I EY++L G ND +HA QL K L
Sbjct: 230 PNQALREELIPSARPYPLEDLLDECREYVEITRRRISFEYVLLAGFNDLPEHAMQLAKCL 289
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
FQ VNLIP+NPI V R SS D++ +F IL+ N +VR G + ACGQ
Sbjct: 290 RGFQSHVNLIPYNPISEVDYKRPSS-DRIQAFVNILK-QQNTAVSVRYSRGLEADAACGQ 347
Query: 267 L 267
L
Sbjct: 348 L 348
>gi|343517865|ref|ZP_08754861.1| 23S rRNA m2A2503 methyltransferase [Haemophilus pittmaniae HK 85]
gi|343394716|gb|EGV07263.1| 23S rRNA m2A2503 methyltransferase [Haemophilus pittmaniae HK 85]
Length = 302
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 27 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 86
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ IM + +S +R+T+ST G+V A++ + +
Sbjct: 87 ITNVVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMMREKI-DV 145
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + ++ LM+++ +Y + S K+ IEY++LD VND
Sbjct: 146 ALAISLHAPNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDG 205
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ +V FQK L Y VRK
Sbjct: 206 TEHAHQLAEVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVIVRKT 263
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 264 RGDDIDAACGQLAGEVIDR 282
>gi|417844951|ref|ZP_12490987.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21639]
gi|341956152|gb|EGT82591.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21639]
Length = 390
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------SNIR- 81
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++ + IR
Sbjct: 115 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGIRP 174
Query: 82 --NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
NVV MGMGEPL N A ++ A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 175 ITNVVMMGMGEPLLNVANVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDV 233
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 234 ALAISLHAPNDELRDEIVPINKKYNIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDG 293
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ ++ FQK L Y +RK
Sbjct: 294 VEHAHQLAEVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIIRKT 351
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 352 RGDDIDAACGQLAGDVIDR 370
>gi|383767084|ref|YP_005446065.1| ribosomal RNA large subunit methyltransferase N [Phycisphaera
mikurensis NBRC 102666]
gi|381387352|dbj|BAM04168.1| ribosomal RNA large subunit methyltransferase N [Phycisphaera
mikurensis NBRC 102666]
Length = 381
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 110/276 (39%), Positives = 164/276 (59%), Gaps = 15/276 (5%)
Query: 4 QNGGFVEAV-IMRYDSSLGKYNGKPRP-GGPRSTLCISSQVGCKMGCNFCATGTMGFKSN 61
+NG F +A + + G+ G P G R T C+SSQVGC +GC+FCA+G G N
Sbjct: 104 KNGFFADATECVMIPAGAGRSGGDAGPRGAARRTACLSSQVGCPVGCSFCASGLGGLDGN 163
Query: 62 LSSGEIVEQLVHASR--------LSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQV 112
L++G+IV+Q R + + NVVFMGMGEP+ N A+V A+R +T +
Sbjct: 164 LTAGQIVQQAWMLDRELKTSGDPVGRLTNVVFMGMGEPMANLKAVVPALRTLTAAWGMNL 223
Query: 113 SPKRITVSTVGIVHAINKFHS-DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
S ++ITVSTVG+V I + DLP + LA+SLHAP ++R QI+P A +E+L+ A
Sbjct: 224 SARKITVSTVGVVPGIRRLGELDLP-VTLALSLHAPNDELRRQIIPWASFVTIEELVAAC 282
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
+ Y + + +++ +EYI+L G ND QHA +L + + + VNLI +N + + R SS
Sbjct: 283 RGYFEATGREVTLEYILLGGFNDGPQHAAELAAVAKRLRSNVNLIRYNEVRGLPHQRPSS 342
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ V FQK+LR + +R G+DI+ ACGQL
Sbjct: 343 EN-VHRFQKVLR-DRGVNAHLRASRGRDIAAACGQL 376
>gi|337750136|ref|YP_004644298.1| protein RlmN [Paenibacillus mucilaginosus KNP414]
gi|336301325|gb|AEI44428.1| RlmN [Paenibacillus mucilaginosus KNP414]
Length = 358
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 153/243 (62%), Gaps = 13/243 (5%)
Query: 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGM 88
+++C+++QVGC++GC FCA+ G K NL+ GEI+ Q+V A +L + ++V MG+
Sbjct: 110 NSICVTTQVGCRIGCTFCASTLGGLKRNLTPGEIIAQVVKAQQLLDETGERVSSIVIMGI 169
Query: 89 GEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 145
GEP NY A++ +R+M GL + + ITVST GIV I KF + +NLA+S+H
Sbjct: 170 GEPFENYDAVMTFLRVMIHPKGL--NIGQRHITVSTSGIVPNIYKFAEEETQINLAISIH 227
Query: 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 205
AP +R ++MP R FP L+ A K Y + ++I EY ++ GVND+ +HA +L ++
Sbjct: 228 APNDALRSKLMPVNRRFPFADLIEACKYYVGKTGRRITFEYALMGGVNDQPEHAEELAQV 287
Query: 206 LETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
L++F + VNLIP N + + RT +D + +FQ+IL + I T+R++ G DI+ AC
Sbjct: 288 LQSFPMAHVNLIPVNFVSERNFVRTPRND-IFTFQRILEKN-KINATIRREQGSDIAAAC 345
Query: 265 GQL 267
GQL
Sbjct: 346 GQL 348
>gi|387771212|ref|ZP_10127378.1| 23S rRNA m2A2503 methyltransferase [Pasteurella bettyae CCUG 2042]
gi|386902417|gb|EIJ67257.1| 23S rRNA m2A2503 methyltransferase [Pasteurella bettyae CCUG 2042]
Length = 371
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS+ +
Sbjct: 97 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKVIGEFGVTGIRP 156
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + +
Sbjct: 157 ITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SGMIDV 215
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + ++ L++++ Y S K+ IEY+MLD VND
Sbjct: 216 ALAISLHAPNDELRDEIVPINKKYNIKMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDS 275
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ +V FQK L Y VRK
Sbjct: 276 IEHAHQLAEVLKNTPCKINLIPWNPFPE-APYGKSSNTRVDKFQKTLM-EYGFTVIVRKT 333
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 334 RGDDIDAACGQLAGEVIDR 352
>gi|358635845|dbj|BAL23142.1| Fe-S cluster redox protein [Azoarcus sp. KH32C]
Length = 377
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 108/268 (40%), Positives = 151/268 (56%), Gaps = 25/268 (9%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLCISSQ GC + C FC+TG GF NL++ EI+ QL A++L
Sbjct: 98 PETNRGTLCISSQAGCALDCAFCSTGKQGFNRNLTAAEIIGQLWLANKLLGGAAAPAGAK 157
Query: 80 -----------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHA 127
I NVV MGMGEPL N+ +V A+R+M + +S +R+TVST GIV A
Sbjct: 158 DAEGEPDNGRVISNVVMMGMGEPLTNFDNVVTALRLMLDDHAYGLSRRRVTVSTSGIVPA 217
Query: 128 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEY 186
+++ + P + LAVSLHAP +R +++P + +PL +LM A + Y ++ + + EY
Sbjct: 218 MDRLRDECP-VALAVSLHAPDDALRDRLVPINQKYPLRELMAACQRYLERAPRDFVTFEY 276
Query: 187 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 246
+MLDGVND + HA L L+ NLIPFNP + F S D++ F IL +
Sbjct: 277 VMLDGVNDTDAHARALVALVRDVPCKFNLIPFNPFPNAG-FERSHPDRIRRFASILIDA- 334
Query: 247 NIRTTVRKQMGQDISGACGQLVVNLPDK 274
I TT RK G D++ ACGQL + D+
Sbjct: 335 GIVTTTRKTRGDDVNAACGQLAGQVQDR 362
>gi|322515331|ref|ZP_08068328.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976]
gi|322118707|gb|EFX90919.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976]
Length = 393
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 119 PEADRATLCVSSQVGCALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 178
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ IM + +S +R+T+ST G+V A + + +
Sbjct: 179 ITNVVMMGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPAFDIMREKI-DV 237
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + ++ LM+++ +Y + S K+ IEY++LD VND
Sbjct: 238 ALAISLHAPNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDG 297
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ +V FQK L Y VRK
Sbjct: 298 TEHAHQLAEVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVIVRKT 355
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 356 RGDDIDAACGQLAGDVIDR 374
>gi|37678948|ref|NP_933557.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
YJ016]
gi|81758246|sp|Q7MNF3.1|RLMN_VIBVY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|37197690|dbj|BAC93528.1| predicted Fe-S-cluster redox enzyme [Vibrio vulnificus YJ016]
Length = 374
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R
Sbjct: 99 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREVGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +IMP + ++ + +++ Y +S + K+ +EY++LD VND
Sbjct: 218 ALAISLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDG 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L +L++ +NLIPFNP S ++ S+ ++ FQK L Y T+RK
Sbjct: 278 TEHAHELAQLMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|359300528|ref|ZP_09186367.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
[parainfluenzae] CCUG 13788]
gi|402304723|ref|ZP_10823787.1| 23S rRNA m2A2503 methyltransferase [Haemophilus sputorum HK 2154]
gi|400377130|gb|EJP30010.1| 23S rRNA m2A2503 methyltransferase [Haemophilus sputorum HK 2154]
Length = 389
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 115 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRP 174
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ IM + +S +R+T+ST G+V A++ + +
Sbjct: 175 ITNVVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMMREKI-DV 233
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 195
LA+SLHAP ++R +IMP + + ++ LM+++ +Y + S K+ IEY++LD VND
Sbjct: 234 ALAISLHAPNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDG 293
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL ++L+ +NLIP+NP + + SS+ +V FQK L Y VRK
Sbjct: 294 TEHAHQLAEVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVIVRKT 351
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 352 RGDDIDAACGQLAGEVIDR 370
>gi|339627429|ref|YP_004719072.1| radical SAM enzyme, Cfr family [Sulfobacillus acidophilus TPY]
gi|379008195|ref|YP_005257646.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfobacillus acidophilus
DSM 10332]
gi|339285218|gb|AEJ39329.1| radical SAM enzyme, Cfr family [Sulfobacillus acidophilus TPY]
gi|361054457|gb|AEW05974.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfobacillus acidophilus
DSM 10332]
Length = 353
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 155/248 (62%), Gaps = 8/248 (3%)
Query: 35 TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMG 89
+LCISSQVGC MGC+FCA+G G LS+GE+++Q+ +A+R + + + MG+G
Sbjct: 107 SLCISSQVGCAMGCHFCASGLKGRIRQLSAGEMLDQVAYANRWLKPQGAQVTRIDIMGIG 166
Query: 90 EPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPV 148
EPL+NY ++ + ++ L + + ITVST G+V I + + + LAVSLHAP
Sbjct: 167 EPLDNYPNVIRFLHLVHDPLAMGLGYRHITVSTSGVVPKIYQLADEGLPVTLAVSLHAPT 226
Query: 149 QDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET 208
+R Q+MP RA+P+ KLM+A + Y + + ++I EY++L G+ND ++ A +L +L+
Sbjct: 227 DALRSQLMPVNRAYPIRKLMDACRYYVERTGRRITFEYLLLRGINDHDELAVKLAELVRG 286
Query: 209 FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 268
F VNLIP+NP+ F S +V FQ I++ + I T+R+++GQ+I ACGQL
Sbjct: 287 FPSHVNLIPWNPVDE-HPFLPSPSAQVRRFQHIVQDA-GISCTIRRELGQEIDAACGQLR 344
Query: 269 VNLPDKIS 276
+ + +S
Sbjct: 345 LREEEPVS 352
>gi|320157276|ref|YP_004189655.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
MO6-24/O]
gi|326423711|ref|NP_759425.2| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
CMCP6]
gi|341941982|sp|Q8DEZ6.2|RLMN_VIBVU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|319932588|gb|ADV87452.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
MO6-24/O]
gi|319999069|gb|AAO08952.2| Ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
CMCP6]
Length = 374
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R
Sbjct: 99 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREVGLEKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +IMP + ++ + +++ Y +S + K+ +EY++LD VND
Sbjct: 218 ALAISLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDG 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L +L++ +NLIPFNP S ++ S+ ++ FQK L Y T+RK
Sbjct: 278 TEHAHELAQLMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|163802471|ref|ZP_02196364.1| hypothetical protein 1103602000590_AND4_19477 [Vibrio sp. AND4]
gi|159173772|gb|EDP58587.1| hypothetical protein AND4_19477 [Vibrio sp. AND4]
Length = 375
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 152/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---------LSN 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R
Sbjct: 99 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIGLQKETGRRP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKI-DV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R QIMP + ++ + +++ Y +S + K+ +EY++LD +ND+
Sbjct: 218 ALAISLHAPNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHINDD 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HA +L +L++ +NLIPFNP S ++ S+ ++ FQK L Y TVRK
Sbjct: 278 MDHARELAELMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>gi|312796090|ref|YP_004029012.1| radical SAM protein [Burkholderia rhizoxinica HKI 454]
gi|312167865|emb|CBW74868.1| Radical SAM family enzyme [Burkholderia rhizoxinica HKI 454]
Length = 391
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 110/260 (42%), Positives = 150/260 (57%), Gaps = 17/260 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS---RLSN------ 79
P R TLC+SSQ GC + C FC+TG GF NL GEI+ QL A R +
Sbjct: 112 PEQGRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLGVGEIIGQLWMAEFALRAARGGLAPG 171
Query: 80 ---IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDL 135
I NVV MGMGEPL N+ A+V A+R+M + +S +R+T+ST G+V I++ ++L
Sbjct: 172 ERVITNVVMMGMGEPLLNFDAVVPAMRLMLDDHAYGLSRRRVTLSTSGVVPMIDRLAAEL 231
Query: 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVND 194
P + LAVSLHAP +R +++P R +PL +LM A Y + + + I EY MLDGVND
Sbjct: 232 P-VALAVSLHAPNDALRDELVPLNRKYPLAELMAACNRYLRVAPRDFITFEYCMLDGVND 290
Query: 195 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 254
++HA QL L NLIPFNP R S +++ F +IL + + TTVR+
Sbjct: 291 RDEHARQLLALTRDVPCKFNLIPFNPFPESGLLR-SHPERIKQFAQILIDA-GVVTTVRR 348
Query: 255 QMGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 349 TRGDDIDAACGQLAGEVRDR 368
>gi|205829717|sp|A4VNX4.2|RLMN_PSEU5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 382
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 160/259 (61%), Gaps = 17/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P G R TLC+SSQ GC + C+FC+TG GF SNL++ E++ Q+ A++
Sbjct: 101 PQGGRGTLCVSSQAGCALDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPAKIDRA 160
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A++I M L + +S +++T+ST G+V I++ + + +
Sbjct: 161 ITNVVMMGMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTLSTSGVVPMIDEL-AKVIDV 219
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEE 196
+LA+SLHAP + +R Q++P + +PL+ L+ A K Y +K + IEY +L GVND+
Sbjct: 220 SLALSLHAPNEALRDQLVPINKKYPLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQP 279
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQ 255
+HA Q+ LL +NLIPFNP S + S++ + FQ IL +G +N+ TVR
Sbjct: 280 EHAEQMIALLADIPCKINLIPFNPFPH-SGYERPSNNAIRRFQDILHKGGHNV--TVRTT 336
Query: 256 MGQDISGACGQLVVNLPDK 274
G+DI ACGQLV + D+
Sbjct: 337 RGEDIDAACGQLVGQVLDR 355
>gi|448823482|ref|YP_007416647.1| hypothetical protein CU7111_0810 [Corynebacterium urealyticum DSM
7111]
gi|448276979|gb|AGE36403.1| hypothetical protein CU7111_0810 [Corynebacterium urealyticum DSM
7111]
Length = 370
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 112/284 (39%), Positives = 160/284 (56%), Gaps = 34/284 (11%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+G +E+V+MRY PG R+TLCISSQ GC M C FCATG G NLS
Sbjct: 102 HDGTLLESVLMRY------------PG--RATLCISSQAGCGMACPFCATGQGGLDRNLS 147
Query: 64 SGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---F 110
GEIVEQ+ +A+R + N+VFMGMGEPL NY +VEAVR +T F
Sbjct: 148 VGEIVEQVRNAARAMRDGEVAGTEGRLSNIVFMGMGEPLANYKRVVEAVRQITQPEPHGF 207
Query: 111 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170
+S + +TVSTVG+ AI K + + LAVSLH P ++R ++P + +E++++A
Sbjct: 208 GISQRNVTVSTVGLAPAIRKLADEDMSVRLAVSLHTPDDELRDTLVPVNNRWSVEEVLDA 267
Query: 171 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQF 227
Y + S +++ IEY ++ +ND+ A LGK L +V VNLIP NP S++
Sbjct: 268 AAYYAEKSGRRVSIEYALIRDINDQPWRADMLGKKLHKALGSKVHVNLIPLNPTPG-SKW 326
Query: 228 RTSSDDKVSSF-QKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
S ++ F Q+++ + + TVR GQ+I+ ACGQL
Sbjct: 327 DASPKERQDEFVQRVI--AQGVPCTVRDTKGQEIAAACGQLAAE 368
>gi|359406892|ref|ZP_09199537.1| 23S rRNA m2A2503 methyltransferase [Prevotella stercorea DSM 18206]
gi|357554692|gb|EHJ36404.1| 23S rRNA m2A2503 methyltransferase [Prevotella stercorea DSM 18206]
Length = 351
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 148/240 (61%), Gaps = 4/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLC+SSQVGCKM C FC TG GF+ +L++ +I+ Q+ + N+VFMG
Sbjct: 99 PDHDRATLCVSSQVGCKMNCLFCQTGKQGFEESLTTTDILNQIYSLPEREKLTNIVFMGQ 158
Query: 89 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEP++N +++ ++MT + SPKRITVS+VGI + +F D ++A+S+H+P
Sbjct: 159 GEPMDNLDNVLKVTQVMTADYGYAWSPKRITVSSVGIRKKLQRF-LDESDCHVAISMHSP 217
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
+ + R Q+MPA R + ++++ ++ Y Q+++ EYIM GVND HA ++ KL+E
Sbjct: 218 IPEQRAQLMPAERGMSIVEVVDLMRNYDFTHQRRLSFEYIMFKGVNDTTTHAREIVKLVE 277
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ NLI F+PI +V + + D + +F+ L ++ + TT+R GQDI ACG L
Sbjct: 278 GLECRFNLIRFHPIPNVD-LQGTDDHHIENFRDYL-TNHGVFTTIRASRGQDIFAACGLL 335
>gi|256762921|ref|ZP_05503501.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256684172|gb|EEU23867.1| conserved hypothetical protein [Enterococcus faecalis T3]
Length = 357
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 104/275 (37%), Positives = 157/275 (57%), Gaps = 29/275 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ +E V+MR + L ++C+++QVGC +GC FCA+G + + +L++
Sbjct: 87 DKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTA 132
Query: 65 GEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 114
GEIV Q++ + R +VV MG+GEP +NYA ++ +R + GL +
Sbjct: 133 GEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTINDDKGLA--IGA 190
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ ITVST G+ I +F +NLA+SLHAP +VR IM R+FP+EKLM A+ EY
Sbjct: 191 RHITVSTSGLAPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMAAIDEY 250
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSD 232
+ + +++ EYIML VND +HA QL LL + + VNLIP+NP+ Q+ SS
Sbjct: 251 IEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSK 310
Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ V F +L+ + I +RK+ G DI ACGQL
Sbjct: 311 EAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|157374568|ref|YP_001473168.1| ribosomal RNA large subunit methyltransferase N [Shewanella
sediminis HAW-EB3]
gi|205829886|sp|A8FT67.1|RLMN_SHESH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157316942|gb|ABV36040.1| radical SAM enzyme, Cfr family [Shewanella sediminis HAW-EB3]
Length = 373
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ +
Sbjct: 99 PEEDRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIIGQVWRVANFIGFQKETGERP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N A ++ A+ IM F +S +R+TVST G+V A++K D +
Sbjct: 159 ITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDKL-GDALDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LAVS+HAP ++R ++P + +PLE+ + ++ Y S + ++ +EY+MLD +ND
Sbjct: 218 ALAVSIHAPNDELRDVLVPVNKKYPLEEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDS 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AH+L KL++ +NLIPFNP S + SS+ ++ F K+L Y + VRK
Sbjct: 278 TDQAHELAKLMKDTPCKINLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 336 RGDDIDAACGQLAGDIRDR 354
>gi|400406439|ref|YP_006589187.1| 23S rRNA m2A2503 methyltransferase [secondary endosymbiont of
Heteropsylla cubana]
gi|400364692|gb|AFP85759.1| 23S rRNA m2A2503 methyltransferase [secondary endosymbiont of
Heteropsylla cubana]
Length = 366
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SN 79
P R+TLCIS+QVGC + C FCAT GF NL EI+ Q+ AS++ +
Sbjct: 93 PEKKRATLCISTQVGCALKCTFCATAQQGFNRNLRVSEIIGQVWQASKIIGLTNPLHRRS 152
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I N+V MGMGEPL N ++ A+ IM F +S +R+T+ST G+V + + + +
Sbjct: 153 ITNIVIMGMGEPLLNLTNVIPAIEIMLDDFGFGLSKRRVTLSTSGVVPGL-EILGKMIDV 211
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDE 195
LA+SLHAP +R +I+P + +E L+ A+ Y ++SQ + IEY+ML +ND+
Sbjct: 212 TLAISLHAPNNTIRNEIVPINHKYNIEALLLAVSRYLEHSQANKNGVTIEYVMLKQINDK 271
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAH+L KLL+ +NLIP+NP + + + SS + + F KILRG Y +RK
Sbjct: 272 IEHAHELAKLLKNISCKINLIPWNPFPN-APYTCSSHNHIDRFAKILRG-YGFTVIIRKT 329
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 330 RGVDIDAACGQLSGEIIDR 348
>gi|365119935|ref|ZP_09337788.1| 23S rRNA methyltransferase [Tannerella sp. 6_1_58FAA_CT1]
gi|363648139|gb|EHL87324.1| 23S rRNA methyltransferase [Tannerella sp. 6_1_58FAA_CT1]
Length = 345
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/264 (39%), Positives = 150/264 (56%), Gaps = 18/264 (6%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G FVE+V + P R+TLC+SSQVGCKM C FC TG GF S L+
Sbjct: 87 SGNFVESVYI--------------PDRDRATLCVSSQVGCKMNCYFCMTGKQGFNSQLTV 132
Query: 65 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVG 123
EI+ Q++ + + N+VFMGMGEPL+N ++ A+ I+T F SPKRITVST+G
Sbjct: 133 REIMNQIISIPESAKLTNLVFMGMGEPLDNLDEVMTALTILTAKWGFAWSPKRITVSTIG 192
Query: 124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
+ + +F + +LAVSLH P + R IMP +A+P+ +++ L+ Y + Q+++
Sbjct: 193 VKRNLPRFLEE-TDCHLAVSLHNPFPEERLSIMPVQKAYPIADIISLLRNYDFSHQRRLS 251
Query: 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
EYIM G ND +HA L KLL+ +NLI F+ I V+ +TS + + F+ L
Sbjct: 252 FEYIMFSGFNDSLKHAEALAKLLKGLDCRINLIRFHAIPGVN-LKTSVESDMVIFRDYLN 310
Query: 244 GSYNIRTTVRKQMGQDISGACGQL 267
T+R G+DI ACG L
Sbjct: 311 RK-GFTCTIRTSRGEDIFAACGML 333
>gi|121612139|ref|YP_001001357.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 81-176]
gi|167006246|ref|ZP_02272004.1| radical SAM enzyme, Cfr family protein [Campylobacter jejuni subsp.
jejuni 81-176]
gi|419618882|ref|ZP_14152407.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 129-258]
gi|419625133|ref|ZP_14158157.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23223]
gi|419642108|ref|ZP_14173918.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni ATCC 33560]
gi|205829695|sp|A1W1W6.1|RLMN_CAMJJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|87249061|gb|EAQ72023.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
81-176]
gi|380594141|gb|EIB14949.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 129-258]
gi|380605477|gb|EIB25450.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23223]
gi|380625402|gb|EIB43991.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni ATCC 33560]
Length = 356
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 165/271 (60%), Gaps = 13/271 (4%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE+V++ GK R R T+C+SSQVGCK GC+FC T G K NLS+
Sbjct: 84 DGLRVESVLLPMKKEKINTEGK-RISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLST 142
Query: 65 GEIVEQLVHASRLSNI-----RNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 116
GEIV Q++ + +NI N+V+MGMGEPL+N + +AV+I+ GL +SP+R
Sbjct: 143 GEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLA--ISPRR 200
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
T+ST G+ I + G+ LA+SLHA ++R ++MP +A+ + +M+A++E+
Sbjct: 201 QTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPI 260
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
+ ++++ EY+++DG+ND+ +HA +L KLL + VNLI FNP S ++ S +
Sbjct: 261 DQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILFNP-HEGSLYKRPSLENAI 319
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
FQ +L + + T+R+ G DIS ACGQL
Sbjct: 320 KFQDLL-SNKGVTCTIRESKGLDISAACGQL 349
>gi|333031476|ref|ZP_08459537.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
coprosuis DSM 18011]
gi|332742073|gb|EGJ72555.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
coprosuis DSM 18011]
Length = 344
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 146/240 (60%), Gaps = 4/240 (1%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88
P R+TLC+SSQVGCKM C FC TG GF NLS+ +I+ Q+ + N+VFMGM
Sbjct: 99 PDEDRATLCVSSQVGCKMNCLFCMTGKQGFSGNLSANQILNQIQTIPESDTLTNIVFMGM 158
Query: 89 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 147
GEP++N +++ + I+T ++ SPKRITVSTVG+ +F + +LAVS+H P
Sbjct: 159 GEPMDNLDEVLKVLEILTSDYGYKWSPKRITVSTVGVRKGFERFLQE-SDCHLAVSIHTP 217
Query: 148 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 207
+ R +MPA + P+ +++N L++Y + Q+++ EYIM GVND HA +L +LL+
Sbjct: 218 IASQRKDLMPAEKGLPISEIVNILRDYDFSKQRRLSFEYIMFKGVNDSISHAKKLLELLD 277
Query: 208 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
+ VNLI F+ I +V S + ++ F+ L + + TT+R G+DI ACG L
Sbjct: 278 GLECRVNLIRFHAIPNVD-LNGSDMETMTVFRDYLTKN-GVFTTIRASRGEDIFAACGML 335
>gi|419648859|ref|ZP_14180177.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9217]
gi|380625820|gb|EIB44362.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9217]
Length = 356
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 165/271 (60%), Gaps = 13/271 (4%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE+V++ GK R R T+C+SSQVGCK GC+FC T G K NLS+
Sbjct: 84 DGLRVESVLLPMKEEKIDAEGK-RISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSA 142
Query: 65 GEIVEQLVHASRLSNI-----RNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 116
GEIV Q++ + +NI N+V+MGMGEPL+N + +AV+I+ GL +SP+R
Sbjct: 143 GEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLA--ISPRR 200
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
T+ST G+ I + G+ LA+SLHA ++R ++MP +A+ + +M+A++E+
Sbjct: 201 QTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPI 260
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
+ ++++ EY+++DG+ND+ +HA +L KLL + VNLI FNP S ++ S +
Sbjct: 261 DQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILFNP-HEGSLYKRPSLENAI 319
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
FQ +L + + T+R+ G DIS ACGQL
Sbjct: 320 KFQDLL-SNKGVTCTIRESKGLDISAACGQL 349
>gi|374321186|ref|YP_005074315.1| hypothetical protein HPL003_06645 [Paenibacillus terrae HPL-003]
gi|357200195|gb|AET58092.1| hypothetical protein HPL003_06645 [Paenibacillus terrae HPL-003]
Length = 365
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/274 (36%), Positives = 159/274 (58%), Gaps = 25/274 (9%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
Q+G +E V+MR+ L ++C+++QVGC +GC+FCA+G + +LS
Sbjct: 86 QDGNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKKSRDLS 131
Query: 64 SGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPK 115
SGEIVEQ++ + +VV MG+GEP +N+ L + +R++ + P+
Sbjct: 132 SGEIVEQIMKVQLYLDQERPGDRVSHVVVMGIGEPFDNFVNLSDFIRVIKDHKGLAIGPR 191
Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
ITVST G+ I +F +NLA+SLHAP + R +IM RA P+E+LM A+ Y
Sbjct: 192 HITVSTSGLADKIIEFADSDLHVNLAISLHAPNNETRTRIMKINRAIPIEELMQAIDYYL 251
Query: 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDD 233
+ ++I +EYI+L +ND ++HA +L +L+ + + VNLIP+NP+ SQ++ S +
Sbjct: 252 DKTNRRITLEYILLKDINDSKEHALELAELVGHRRNLANVNLIPYNPVDEHSQYQRSESE 311
Query: 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ F IL+ I +VR + G DI ACGQL
Sbjct: 312 SITGFYDILKKQ-GISCSVRLEHGVDIDAACGQL 344
>gi|365920703|ref|ZP_09445025.1| 23S rRNA m2A2503 methyltransferase [Cardiobacterium valvarum F0432]
gi|364577686|gb|EHM54940.1| 23S rRNA m2A2503 methyltransferase [Cardiobacterium valvarum F0432]
Length = 367
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/273 (41%), Positives = 157/273 (57%), Gaps = 15/273 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLCISSQ GC + C FC+T GF NL+SGEI+ Q+ A + N
Sbjct: 98 PEDDRGTLCISSQAGCALACPFCSTAHEGFNRNLTSGEIIVQVWLAKEMLNCDRHGNNRV 157
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
+ NVV MGMGEPL N+ ++ A R+ M F +S +R+T+ST GIV AI+ ++ L
Sbjct: 158 VTNVVLMGMGEPLVNFNNVLPATRLMMDDYAFGLSKRRVTLSTSGIVPAIHALR-EVTDL 216
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQ-KIFIEYIMLDGVNDEE 196
+LAVSLHAP ++R QI+P + L+ L++A +Y Q N Q + EY+ML GVND
Sbjct: 217 SLAVSLHAPNDELRNQIVPVNARYGLDALLDACHQYVQHNGQHGGVTWEYVMLRGVNDSL 276
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
+HA QL +LL +NLIPFN S+F S + +FQ+ L + + T+RK
Sbjct: 277 EHARQLVELLRGIPGKINLIPFNAFPG-SRFECSKRGDILAFQRYLTENGYV-ATIRKTR 334
Query: 257 GQDISGACGQLVVNLPDKISAKSTPPVTDIEDL 289
G+DI ACGQLV + D+ + ++E L
Sbjct: 335 GEDIDAACGQLVGQVKDRSRRERKLSRKEVETL 367
>gi|269127610|ref|YP_003300980.1| radical SAM enzyme, Cfr family [Thermomonospora curvata DSM 43183]
gi|268312568|gb|ACY98942.1| radical SAM enzyme, Cfr family [Thermomonospora curvata DSM 43183]
Length = 388
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/278 (38%), Positives = 155/278 (55%), Gaps = 29/278 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY R T+C+SSQ GC M C FCATG G NLS+
Sbjct: 124 DGTLIESVLMRYPD--------------RITMCVSSQAGCGMNCPFCATGQAGLTRNLST 169
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEIVEQ+V +R I N+VFMGMGEPL NY A++ A+R +T
Sbjct: 170 GEIVEQVVAGARALARGKIAGGPGRISNIVFMGMGEPLANYKAVLGAIRRITDPAPDGLG 229
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + +TVSTVG+V AI + + + LAVSLHAP ++R +++P + + ++++A
Sbjct: 230 ISQRSVTVSTVGLVPAIARLADEGLSVRLAVSLHAPDDELRDELVPVNTRWKVREVLDAA 289
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
Y + +++ IEY ++ VND+ A LG+LL+ V VNLIP NP S++ S
Sbjct: 290 WAYADRTGRRVSIEYALIRDVNDQAWRADLLGRLLKGHLVHVNLIPLNPTPG-SKWTASR 348
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
F L+ ++ + TVR G++I GACGQL
Sbjct: 349 PRDEREFVARLQ-AHGVPVTVRDTRGREIDGACGQLAA 385
>gi|154147902|ref|YP_001407255.1| radical SAM protein [Campylobacter hominis ATCC BAA-381]
gi|205829692|sp|A7I414.1|RLMN_CAMHC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|153803911|gb|ABS50918.1| radical SAM enzyme, Cfr family [Campylobacter hominis ATCC BAA-381]
Length = 358
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/276 (39%), Positives = 166/276 (60%), Gaps = 15/276 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++G +E+V++ + NG+ R T+C+SSQVGCK+GC FC T GF
Sbjct: 77 FELKDGKTIESVLLPMKDEITDENGEILRH-KRYTICVSSQVGCKIGCAFCLTAKGGFVR 135
Query: 61 NLSSGEIVEQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVRIM---TGLPFQV 112
NLS+GEIVEQ+ +++ I NVV+MGMGEPLNN + +A++I+ GL +
Sbjct: 136 NLSAGEIVEQIRLIKKINKIPYERRINVVYMGMGEPLNNLENVAKAIKILIQNEGLA--I 193
Query: 113 SPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 172
SP+R T+ST G+ I K G+ LA+SLHA ++R ++MP RA+ + +M A++
Sbjct: 194 SPRRQTISTSGLSSQIKKLGEMNLGVLLAISLHAVNDELREKLMPINRAYNIASIMQAVR 253
Query: 173 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP-IGSVSQFRTSS 231
E+ + ++++ EY+++DGVND A L +LL + VNLI FNP IG S+F S
Sbjct: 254 EFPIDLRKRVMFEYLVMDGVNDSINDAKTLVRLLNGIKAKVNLIYFNPHIG--SKFHRPS 311
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ + FQ L + I T+R+ G DIS ACGQL
Sbjct: 312 EENMIKFQDYL-SVHGITCTIRQSKGLDISAACGQL 346
>gi|408681027|ref|YP_006880854.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
venezuelae ATCC 10712]
gi|328885356|emb|CCA58595.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
venezuelae ATCC 10712]
Length = 368
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/281 (38%), Positives = 155/281 (55%), Gaps = 33/281 (11%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
+G VE+V+MRY R T+CISSQ GC M C FCATG G NLS
Sbjct: 103 HDGTLVESVLMRYPD--------------RVTMCISSQAGCGMNCPFCATGQAGLDRNLS 148
Query: 64 SGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GL 108
+ EIV Q+V R + + N+VFMGMGEPL NY +V A+R +T GL
Sbjct: 149 TAEIVHQIVDGMRALRDGEVPGGPARLSNIVFMGMGEPLANYKRVVGAIRRLTDPEPDGL 208
Query: 109 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 168
+S + ITVSTVG+V A+ +F + LAVSLHAP ++R ++P + + +++
Sbjct: 209 --GLSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVREVL 266
Query: 169 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 228
+A EY + S ++I IEY ++ +ND+ LG+LL+ +V VNLIP NP
Sbjct: 267 DAAWEYAEKSGRRISIEYALIRDINDQAWRGDLLGRLLKGRRVHVNLIPLNPTPGSKWTA 326
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
+ +D+ + + I R + + TVR GQ+I GACGQL
Sbjct: 327 SRPEDEKAFVEAIAR--HGVPVTVRDTRGQEIDGACGQLAA 365
>gi|157961130|ref|YP_001501164.1| ribosomal RNA large subunit methyltransferase N [Shewanella
pealeana ATCC 700345]
gi|205829883|sp|A8H242.1|RLMN_SHEPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157846130|gb|ABV86629.1| radical SAM enzyme, Cfr family [Shewanella pealeana ATCC 700345]
Length = 373
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL+ EIV Q+ +
Sbjct: 99 PEDDRATLCVSSQVGCALECTFCSTAQQGFNRNLTVAEIVGQIWRVADFIGFVKDTGERP 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N ++ A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 159 ITNVVMMGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDVLDV 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LAVS+HAP ++R ++P + +PLE+ + ++ Y S + ++ +EY+MLD +ND
Sbjct: 218 ALAVSIHAPNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDS 277
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
AH+L KL++ VNLIPFNP S + SS+ ++ F K+L Y + VRK
Sbjct: 278 TDQAHELAKLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKT 335
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 336 RGDDIDAACGQLAGDIRDR 354
>gi|282890718|ref|ZP_06299238.1| hypothetical protein pah_c026o038 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175685|ref|YP_004652495.1| ribosomal RNA large subunit methyltransferase N 1 [Parachlamydia
acanthamoebae UV-7]
gi|281499311|gb|EFB41610.1| hypothetical protein pah_c026o038 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480043|emb|CCB86641.1| ribosomal RNA large subunit methyltransferase N 1 [Parachlamydia
acanthamoebae UV-7]
Length = 364
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 161/271 (59%), Gaps = 24/271 (8%)
Query: 15 RYDSSLGKYNGKPRPG----------GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+ D GK+ GK G TLCISSQVGC+MGC FC TG MG NL++
Sbjct: 75 KEDGKTGKFLGKTADGLEVEFVQIPMQSGGTLCISSQVGCQMGCAFCETGKMGLLRNLTT 134
Query: 65 GEIVEQLV---HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVS 120
EIV Q+ H ++ S RN+VFMGMGEPL+N+ A+++AVRI F +R+T+S
Sbjct: 135 EEIVSQVYLAKHHNQFS-FRNLVFMGMGEPLDNFDAVMQAVRIFNDPKGFGFGRRRMTIS 193
Query: 121 TVGIVHAINKFHSDLPGL--NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178
T G V I+K ++L G NLAVS++AP ++R ++MP R + L+ L A++ Y +
Sbjct: 194 TSGCVDGIDKL-ANLGGQAPNLAVSINAPTDELRNRLMPVNRKYDLQTLYEAMQGYCTKT 252
Query: 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 238
++I I Y++L G ND+ +HA QL + L+ V +NLIP+NP S +F+ + + +F
Sbjct: 253 GRQILIAYVLLQGQNDQIEHALQLSEYLKGLNVKINLIPYNP-QSRDRFQAPDLNTIEAF 311
Query: 239 QKILR--GSYNIRTTVRKQMGQDISGACGQL 267
+ LR G Y T +R GQDI ACGQL
Sbjct: 312 TQSLRQKGYY---TLLRLTKGQDIMAACGQL 339
>gi|411009718|ref|ZP_11386047.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
aquariorum AAK1]
gi|423196239|ref|ZP_17182822.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
hydrophila SSU]
gi|404633040|gb|EKB29642.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
hydrophila SSU]
Length = 367
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 149/254 (58%), Gaps = 11/254 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----IRNVV 84
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++ I NVV
Sbjct: 98 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAKIVGGKRPITNVV 157
Query: 85 FMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N A +V A+R+ M + +S +R+T+ST G+V A++ D + LA+S
Sbjct: 158 MMGMGEPLLNLANVVPAMRLMMDDYGYGISKRRVTISTSGVVPALDML-GDQIDVALAIS 216
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAH 200
LHAP +R +IMP + +E + ++ Y S ++ +EY++LD +ND+ QHAH
Sbjct: 217 LHAPNDKLRSEIMPINDKYNIEAFLAGVRRYLGKSNANGGRVTVEYVLLDHINDDMQHAH 276
Query: 201 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
+L K+L+ +NLIPFNP + + S+ ++ F K+L Y VRK G DI
Sbjct: 277 ELAKVLKDTPSKINLIPFNPFPG-NPYGKPSNSRIDRFSKVLM-EYGFTVIVRKTRGDDI 334
Query: 261 SGACGQLVVNLPDK 274
ACGQLV + D+
Sbjct: 335 DAACGQLVGEVIDR 348
>gi|167037727|ref|YP_001665305.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040388|ref|YP_001663373.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
sp. X514]
gi|256752274|ref|ZP_05493137.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914472|ref|ZP_07131788.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
gi|307724292|ref|YP_003904043.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
gi|320116142|ref|YP_004186301.1| Cfr family radical SAM protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|205829918|sp|B0KA06.1|RLMN_THEP3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|205829919|sp|B0K1Y9.1|RLMN_THEPX RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|166854628|gb|ABY93037.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X514]
gi|166856561|gb|ABY94969.1| radical SAM enzyme, Cfr family [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748842|gb|EEU61883.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889407|gb|EFK84553.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
gi|307581353|gb|ADN54752.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
gi|319929233|gb|ADV79918.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 342
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 166/268 (61%), Gaps = 22/268 (8%)
Query: 4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
++G +E V ++Y R G +T C+S+QVGC M C+FCA+ G +L
Sbjct: 85 EDGNIIEGVAIKY-----------RFG---NTACVSTQVGCNMRCSFCASAIGGKVRDLK 130
Query: 64 SGEIVEQLVHA-SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 119
+ E+V+Q++ S I N+V MG GEP +NY +++ ++I+ GL + + IT+
Sbjct: 131 ASEMVDQVMAIDSDYGKISNIVLMGSGEPFDNYDEVMKFIKIVNNPHGLG--IGSRHITI 188
Query: 120 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 179
ST GIV I +F + +NL++SLHAP ++R Q+MP +A+PLE+LM A K Y ++
Sbjct: 189 STCGIVPKIYQFADEKLQVNLSISLHAPNDELRTQLMPINKAYPLEELMKACKYYVDKTR 248
Query: 180 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 239
++I EY +++GVND+++HA+QL LL+ +NLIP N + + F+ ++++KV F+
Sbjct: 249 RRITFEYSLIEGVNDKKEHAYQLVDLLKGMLCHINLIPINYVREIG-FKKANNEKVMMFK 307
Query: 240 KILRGSYNIRTTVRKQMGQDISGACGQL 267
+I+ + I TVR+++G DI ACGQL
Sbjct: 308 RIIEDA-GISCTVRRELGSDIEAACGQL 334
>gi|419640901|ref|ZP_14172818.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23357]
gi|380618783|gb|EIB37897.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23357]
Length = 356
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 165/271 (60%), Gaps = 13/271 (4%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE+V++ GK R R T+C+SSQVGCK GC+FC T G K NLS+
Sbjct: 84 DGLRVESVLLPMKEEKIDTEGK-RISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSA 142
Query: 65 GEIVEQLVHASRLSNI-----RNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 116
GEIV Q++ + +NI N+V+MGMGEPL+N + +AV+I+ GL +SP+R
Sbjct: 143 GEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLA--ISPRR 200
Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
T+ST G+ I + G+ LA+SLHA ++R ++MP +A+ + +M+A++E+
Sbjct: 201 QTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPI 260
Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
+ ++++ EY+++DG+ND+ +HA +L KLL + VNLI FNP S ++ S +
Sbjct: 261 DQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILFNP-HEGSLYKRPSLENAI 319
Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
FQ +L + + T+R+ G DIS ACGQL
Sbjct: 320 KFQDLL-SNKGVTCTIRESKGLDISAACGQL 349
>gi|373469057|ref|ZP_09560274.1| 23S rRNA m2A2503 methyltransferase [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371765149|gb|EHO53495.1| 23S rRNA m2A2503 methyltransferase [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 351
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 158/266 (59%), Gaps = 19/266 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V M+Y+ +++CISSQVGC+MGC FCA+ G NL+
Sbjct: 86 DGNIIESVRMKYEHG--------------NSVCISSQVGCRMGCKFCASTLDGLVRNLTV 131
Query: 65 GEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVST 121
GE+++Q+ RL + N+V MG GEP++NY +V+ VRI++ + +S + ITVST
Sbjct: 132 GEMLDQVYSIQRLLGERVSNIVVMGSGEPMDNYENIVKFVRIISSEMGLNISQRNITVST 191
Query: 122 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181
GIV I + + + LA+SLHAP ++R IMP A + L+ +++A Y K + ++
Sbjct: 192 CGIVPKIRQLADEGLNITLALSLHAPNDEIRKTIMPVANKYALKDVISACDYYFKKTGRR 251
Query: 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241
+ EY ++ GVND + A +L KL+ + +NLIP NPI F+ S K+ +F++
Sbjct: 252 VSYEYSLVAGVNDNIEEAKKLVKLVNGRNIHINLIPVNPIKE-RDFKQSDKLKIKAFREF 310
Query: 242 LRGSYNIRTTVRKQMGQDISGACGQL 267
L + TVR++MG+DI GACGQL
Sbjct: 311 LEKK-GVNATVRREMGRDIDGACGQL 335
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,316,801,074
Number of Sequences: 23463169
Number of extensions: 166642515
Number of successful extensions: 399372
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3845
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 381109
Number of HSP's gapped (non-prelim): 4147
length of query: 292
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 151
effective length of database: 9,050,888,538
effective search space: 1366684169238
effective search space used: 1366684169238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)