BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022752
(292 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0LQM1|RLMN_SYNFM Dual-specificity RNA methyltransferase RlmN OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=rlmN PE=3 SV=1
Length = 342
Score = 221 bits (562), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/250 (48%), Positives = 165/250 (66%), Gaps = 14/250 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR----LSNIRNVV 84
P PRSTLC+SSQVGC +GC FC TG++GFK NLS+ EIV+Q+ R S I N+V
Sbjct: 97 PDLPRSTLCVSSQVGCALGCKFCLTGSLGFKRNLSAAEIVDQVCQVQRDLGSRSRITNIV 156
Query: 85 FMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
FMGMGEPL N +++ A+R++ G+ F S +RIT+ST G+V + + + P +NLA
Sbjct: 157 FMGMGEPLANLDSVLRAIRVIAEPNGMAF--SHRRITLSTAGLVPQLRRLGRESP-VNLA 213
Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
VSLHA ++R ++MP R +PLE LM A +EY +++I EYI+LDG+ND+ + A Q
Sbjct: 214 VSLHAAENELRAELMPVNRTYPLEVLMAACREYPLPPRKRITFEYILLDGINDDPKQAKQ 273
Query: 202 LGKLLETFQVVVNLIPFNP-IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
L KLL + VNL+PFNP GSV FR S+ +V +FQ+ L+ + I T VR+ G +I
Sbjct: 274 LVKLLHGIRAKVNLMPFNPHPGSV--FRKPSEQRVLAFQEALQNA-RITTHVRRSRGGEI 330
Query: 261 SGACGQLVVN 270
ACGQLV
Sbjct: 331 GAACGQLVAE 340
>sp|Q0VND7|RLMN_ALCBS Dual-specificity RNA methyltransferase RlmN OS=Alcanivorax
borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
GN=rlmN PE=3 SV=1
Length = 381
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/286 (43%), Positives = 166/286 (58%), Gaps = 30/286 (10%)
Query: 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSN 61
+ NGG VE V + P G R TLC+SSQVGC + C+FC+TG GF+ +
Sbjct: 87 EMDNGGAVETVFI--------------PDGRRGTLCVSSQVGCAVDCSFCSTGKQGFQRD 132
Query: 62 LSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQ 111
++S EI+ Q+ ASR I NVV MGMGEPL NY ++ A+RIM L +
Sbjct: 133 MTSAEIIGQVWQASRAFGPRRNLGQHPITNVVMMGMGEPLLNYDKVLTAMRIMKDDLGYG 192
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+ KRITVST G++ +N+ DL ++LAVSLHAP ++R Q++P R +PL+ LM A
Sbjct: 193 IGKKRITVSTSGVIPKMNQLSEDL-DVSLAVSLHAPNDELRNQLVPLNRKYPLKDLMAAC 251
Query: 172 KEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 228
K Y KN + I +EY+ML VND+ +HA QL KLL V VNLIPFNP R
Sbjct: 252 KRYSKNITHRHNTITMEYVMLRDVNDKPEHARQLVKLLNGIPVKVNLIPFNPFPHAGYER 311
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
+ +D + F K L + + TTVR G DI ACGQLV + D+
Sbjct: 312 SRKND-ILEFHKYLNDN-GVMTTVRTTRGDDIDAACGQLVGQVKDR 355
>sp|Q6MDD0|RLMN2_PARUW Probable dual-specificity RNA methyltransferase RlmN 2
OS=Protochlamydia amoebophila (strain UWE25) GN=rlmN2
PE=3 SV=2
Length = 358
Score = 208 bits (530), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 155/246 (63%), Gaps = 8/246 (3%)
Query: 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVH-----ASRLSNIRNVVF 85
G R T+C+SSQVGC C FCA+G GF NL EI+EQ++ +S+ + +VV+
Sbjct: 97 GIRRTVCVSSQVGCPAKCAFCASGQQGFFRNLRPTEIIEQILQINAWLSSKGEKVSHVVY 156
Query: 86 MGMGEPLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144
MGMGEPL NY ++V ++R+++ F +S +RITVSTVG+V I + + +NL +SL
Sbjct: 157 MGMGEPLKNYESVVASIRVLSHPDFCNISQRRITVSTVGVVEGIKRLSKEGLKVNLVLSL 216
Query: 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 204
HAP Q +R +I+P AR +PLE+++ ++ EY + +++ I EY +L G+ND HAH+L
Sbjct: 217 HAPNQHIRKKIIPYARKYPLEEILESMDEYAQKTKRDITFEYTLLAGINDHPDHAHELAH 276
Query: 205 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 264
LL+ Q VNLIP+NPI + + + + F+ +L GS+ I T R G DI AC
Sbjct: 277 LLKGKQCTVNLIPYNPIPGL-RLKRPEKKAIKQFRSVLYGSH-IVNTCRYTKGDDIGAAC 334
Query: 265 GQLVVN 270
GQL +
Sbjct: 335 GQLALQ 340
>sp|Q1DCU1|RLMN1_MYXXD Dual-specificity RNA methyltransferase RlmN 1 OS=Myxococcus xanthus
(strain DK 1622) GN=rlmN1 PE=3 SV=1
Length = 359
Score = 208 bits (530), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 168/287 (58%), Gaps = 22/287 (7%)
Query: 7 GFVEAVIMRYDSS------LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
GF +++R D L ++ G R+T+CIS+Q GC MGC FCATG MG
Sbjct: 80 GFTHKLLLRLDDGQTIETVLMRFKG-------RATVCISTQAGCAMGCVFCATGQMGLSR 132
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSP 114
+L+ GEIV Q++H +R+ +RNVV MGMGEPL+NY + AV ++ L + P
Sbjct: 133 HLTPGEIVGQILHVNRILRASGETLRNVVLMGMGEPLHNYEHTMSAVDVLVDALGLAMGP 192
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
+ IT+STVG+V I + + ++LAVSLH R ++PA R +PL++LM+A + Y
Sbjct: 193 RFITLSTVGVVPGIRRLADEERPIHLAVSLHGATDAERAALVPAGRRWPLDELMDACRYY 252
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
+ +++IF E+ ++ G ND +HAH LG+LL VN+IP NP S +
Sbjct: 253 SEKRKRRIFFEWTLISGRNDTAEHAHTLGQLLRGMDAHVNVIPLNPTVGYDGG-PSRPES 311
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 281
V +FQ +L +Y++ +TVR++ G DI CGQL + ++ S +S P
Sbjct: 312 VRAFQDVL-ATYDVPSTVRQRRGIDIDAGCGQLKATV-ERRSRRSLP 356
>sp|Q2J713|RLMN_FRASC Probable dual-specificity RNA methyltransferase RlmN OS=Frankia sp.
(strain CcI3) GN=rlmN PE=3 SV=1
Length = 421
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/279 (41%), Positives = 164/279 (58%), Gaps = 29/279 (10%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+VIMRY R+T+C+SSQ GC MGC FCATG G NLS+
Sbjct: 122 DGASLESVIMRYPD--------------RATVCVSSQAGCGMGCPFCATGQGGLTRNLST 167
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
EIVEQ+VHA+R+ + + NVVFMGMGEPL NYAA++ A+R +T P
Sbjct: 168 AEIVEQVVHAARVLRRRELAGGETRLSNVVFMGMGEPLANYAAVIAALRRLTAHPPEGLG 227
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + +TVSTVG+V AI + + + LAVSLHAP +R +++P +P+ +++ A
Sbjct: 228 LSARGLTVSTVGLVPAIRRLAGEGLPVTLAVSLHAPDDVLRNELVPINTRWPVVEVLAAA 287
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231
EY + + +++ +EY ++DGVND+ A L LL VNLIP NP G S +R S+
Sbjct: 288 WEYAEVTGRRVSVEYALIDGVNDDVGRADALADLLVGRLAHVNLIPLNPTGG-SSWRASA 346
Query: 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
+F + LR I TTVR G++I+ ACGQL
Sbjct: 347 PAGQRAFVRRLR-DRGIVTTVRDTRGREIAAACGQLAAE 384
>sp|A9A3L9|RLMN_NITMS Ribosomal RNA large subunit methyltransferase N OS=Nitrosopumilus
maritimus (strain SCM1) GN=rlmN PE=3 SV=1
Length = 351
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 173/278 (62%), Gaps = 18/278 (6%)
Query: 1 MDCQNGGFVEAVIMRYD-SSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFK 59
++ +G VE V+M+Y+ + +G G PRST+C+S+Q+GC MGC FCATG MGF+
Sbjct: 83 LELSDGSSVETVLMQYEPTKIG--------GHPRSTICVSTQIGCAMGCVFCATGQMGFE 134
Query: 60 SNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVS 113
+NL + IV Q++H + L ++ N+VFMGMGEP+ NY ++ AV+I+T F +
Sbjct: 135 TNLKAEHIVSQVIHFAELLEQRGEHVTNLVFMGMGEPMANYDEMIRAVKILTHDRGFGLG 194
Query: 114 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173
+ IT+ST+GI I K + + LA+SLHAP ++R +++P A +E ++ + ++
Sbjct: 195 QRHITISTIGITSGIEKLAEENLQIGLAISLHAPNNELRKKLVPTAGPNSVEDIIKSGRD 254
Query: 174 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDD 233
Y K + +++ EY +++GVND + AH+L +LL VN+IP NP + F+ S+
Sbjct: 255 YFKKTGRRVTFEYALMEGVNDSPEIAHELARLLRGNGSHVNIIPINP--TAGDFKRPSEK 312
Query: 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 271
V F++ILR S + TVR + G +IS ACGQL ++
Sbjct: 313 NVLEFEQILRKS-GVNCTVRVEKGTEISAACGQLRTDI 349
>sp|A1WXZ3|RLMN_HALHL Dual-specificity RNA methyltransferase RlmN OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=rlmN PE=3 SV=1
Length = 359
Score = 205 bits (521), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/261 (44%), Positives = 157/261 (60%), Gaps = 10/261 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----SNIRNVV 84
P R TLCISSQ GC MGC FCATG GF NL++ EIV Q VH +R I N+V
Sbjct: 103 PEPKRGTLCISSQAGCPMGCTFCATGEGGFSRNLTAAEIVGQ-VHVARQHLPEGAITNIV 161
Query: 85 FMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
FMGMGEPL N+ ++ A R+ T F +S +R+T+ST G+VHAI + + ++LAVS
Sbjct: 162 FMGMGEPLLNFDPVISASRVFTDDYGFVLSKRRVTISTSGVVHAIERMQR-VTDVSLAVS 220
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQL 202
LHAP ++R Q++P R PLE+L+ A Y + ++I EY+MLDGVND+++HA +L
Sbjct: 221 LHAPNNELRNQLVPLNRKNPLERLLPACHAYIAEKPHRRITWEYVMLDGVNDQDEHAREL 280
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
+ L VNLIPFNP RT D +V F L + + T+R+ G DI G
Sbjct: 281 LQRLRGIPSKVNLIPFNPYPGARYGRT-PDRQVRRFADRLL-EHGLTATIRETRGDDIDG 338
Query: 263 ACGQLVVNLPDKISAKSTPPV 283
ACGQLV + D ++K P
Sbjct: 339 ACGQLVGEIRDARASKVARPA 359
>sp|A1WE19|RLMN_VEREI Dual-specificity RNA methyltransferase RlmN OS=Verminephrobacter
eiseniae (strain EF01-2) GN=rlmN PE=3 SV=1
Length = 391
Score = 204 bits (519), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 161/259 (62%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN---- 79
P R TLC+SSQ GC +GC FC+TG GF NLSSGEI+ QL A RL
Sbjct: 97 PEDERGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSSGEIIAQLWFAEHALRRRLKTEDRV 156
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I N+V MGMGEPL N AAL+ A+R+M + +S +R+TVST G+V I++ D P +
Sbjct: 157 ISNLVMMGMGEPLQNLAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLARDCP-V 215
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R Q++P R +P+++L+ A K Y ++ + I EY MLDGVND+
Sbjct: 216 ALAVSLHAPNDALRDQLVPLNRKYPIDELLQACKRYLAHAPRDFITFEYCMLDGVNDQIG 275
Query: 198 HAHQLGKLL--ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HA QL +L+ + NLIPFNP + R S+ D++ +F ++L G+ I TTVRK
Sbjct: 276 HARQLVELVGRAAIRCKFNLIPFNPFPASGLLR-SAHDQILAFAQVL-GAAGIVTTVRKT 333
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI+ ACGQL ++ D+
Sbjct: 334 RGDDIAAACGQLAGDVRDR 352
>sp|A1A1I4|RLMN_BIFAA Probable dual-specificity RNA methyltransferase RlmN
OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM
20083 / NCTC 11814 / E194a) GN=rlmN PE=3 SV=1
Length = 386
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/285 (39%), Positives = 167/285 (58%), Gaps = 32/285 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC MGC FCATG +G N+S+
Sbjct: 118 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMSA 163
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEIVEQ+ A++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 164 GEIVEQVRVAAKAMRDGEVAGGSGRLSNIVFMGMGEPMGNYKSVLSAVRQISSMPPEGFG 223
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K + + LAVSLHAP ++R +++P + F +++++A
Sbjct: 224 ISARNITVSTVGVVPGIRKLAEEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAA 283
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 284 HDYYLASKRRVSIEYALMRGINDQAEHAKLLAKRLNHYGDDWAHVNPIPLNPIEG-SKWT 342
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 273
S + F +IL + I T+R GQDI GACGQL D
Sbjct: 343 ASKPEDERRFLEILHNA-GITATLRDTRGQDIDGACGQLAAKERD 386
>sp|A2SHB8|RLMN_METPP Dual-specificity RNA methyltransferase RlmN OS=Methylibium
petroleiphilum (strain PM1) GN=rlmN PE=3 SV=1
Length = 394
Score = 201 bits (511), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 160/268 (59%), Gaps = 20/268 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-----SRLSN---- 79
P R TLCISSQ GC +GC FC+TG GF NLS+GEIV QL HA +RL
Sbjct: 97 PENDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLSTGEIVAQLWHAEHQLRARLGTTERV 156
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NYAAL+ A+R+M + +S +R+TVST G+V I++ D P +
Sbjct: 157 ISNVVMMGMGEPLQNYAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLREDCP-V 215
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P R +P+ +L+ A + Y + + + I EY MLDGVND E
Sbjct: 216 ALAVSLHAPTDALRDDLVPLNRKYPIAELLEACQRYLEAAPRDFITFEYCMLDGVNDSEA 275
Query: 198 HAHQLGKLLETFQVV------VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251
A +L +L+ V +NLIPFNP S SS +V +F ++L + TT
Sbjct: 276 QARELLRLVGERGPVGRVPCKINLIPFNPF-PASGLTRSSVARVQAFAQLLVDG-GLVTT 333
Query: 252 VRKQMGQDISGACGQLVVNLPDKISAKS 279
VR+ G DI ACGQL + D+ +A++
Sbjct: 334 VRRTRGDDIDAACGQLAGEVQDRTNAQA 361
>sp|Q67PQ7|RLMN_SYMTH Probable dual-specificity RNA methyltransferase RlmN
OS=Symbiobacterium thermophilum (strain T / IAM 14863)
GN=rlmN PE=3 SV=1
Length = 371
Score = 201 bits (510), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 166/270 (61%), Gaps = 24/270 (8%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G VE+V+MR S G +++C+++QVGC+MGC FCA+ G NL++
Sbjct: 108 DGSQVESVLMR--QSWG------------NSVCVTTQVGCRMGCTFCASTVGGLVRNLTA 153
Query: 65 GEIVEQLVHASRL----SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRI 117
GEIV+Q+V R I VV MG GEPL NY +++AVR++ GL + + I
Sbjct: 154 GEIVDQIVMMQRELPQGERISTVVLMGSGEPLENYDHVLKAVRLVHDPEGL--NIGYRHI 211
Query: 118 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177
T+ST GIV + + + + LA+SLHAP ++R Q+MP AR +PL +++ A +EY +
Sbjct: 212 TISTSGIVPGMRRLAEEGLPITLALSLHAPTDELRRQLMPVARIWPLAEVLAAAREYGEK 271
Query: 178 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 237
+ +++ EYI+++GVND + A QL +LL+ VNLIP NP+ Q+R ++V+
Sbjct: 272 TGRRVTYEYILIEGVNDGPEEARQLARLLKGALAHVNLIPMNPVAERPQYRRPGPERVNR 331
Query: 238 FQKILRGSYNIRTTVRKQMGQDISGACGQL 267
F++IL S I TTVR++MG +I ACGQL
Sbjct: 332 FKEILE-SNGIATTVRREMGGEIDAACGQL 360
>sp|A1TM24|RLMN_ACIAC Dual-specificity RNA methyltransferase RlmN OS=Acidovorax citrulli
(strain AAC00-1) GN=rlmN PE=3 SV=1
Length = 373
Score = 200 bits (509), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 159/265 (60%), Gaps = 19/265 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-----SRLSN---- 79
P R TLCISSQ GC +GC FC+TG GF NL+SGEIV QL A +RL
Sbjct: 96 PEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQERV 155
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY ALV A+R M + +S +R+TVST G+V +++ D +
Sbjct: 156 ISNVVMMGMGEPLQNYTALVPALRTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDC-AV 214
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
+AVSLHAP +R Q++P R +PL +L++A Y +++ + I EY MLDGVND+ +
Sbjct: 215 AMAVSLHAPNDALRDQLVPLNRKYPLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPE 274
Query: 198 HAHQLGKLL-----ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL L+ E + NLIPFNP S S+ +V++F K+L + I TTV
Sbjct: 275 HARQLIDLVRPRGGEGVRCKFNLIPFNPF-PASGLHRSNPQQVAAFAKMLSDA-GIVTTV 332
Query: 253 RKQMGQDISGACGQLVVNLPDKISA 277
RK G DI ACGQL ++ D+ A
Sbjct: 333 RKTRGDDIDAACGQLAGDVKDRTRA 357
>sp|Q12AB5|RLMN_POLSJ Dual-specificity RNA methyltransferase RlmN OS=Polaromonas sp.
(strain JS666 / ATCC BAA-500) GN=rlmN PE=3 SV=1
Length = 382
Score = 200 bits (509), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 156/264 (59%), Gaps = 19/264 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLCISSQ GC +GC FC+TG GF NL++GEIV QL A
Sbjct: 96 PETDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVSQLWFAEHFLRQHLGRQERV 155
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY+ LV A+R+M + +S +R+TVST G+V I++ D P +
Sbjct: 156 ISNVVMMGMGEPLQNYSQLVPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAKDCP-V 214
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P + +P+ +L+ A YQ ++ + I EY MLDGVND+ +
Sbjct: 215 ALAVSLHAPQDALRDSLVPLNKKYPIAELLQACTRYQASAPRDFITFEYCMLDGVNDQPE 274
Query: 198 HAHQLGKLLET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL L++ NLIPFNP S + S+ +V++F KIL + I TTV
Sbjct: 275 HARQLVALMQNHSAGGLSCKFNLIPFNPF-PASGLKRSAMPQVAAFAKILMDA-GIVTTV 332
Query: 253 RKQMGQDISGACGQLVVNLPDKIS 276
RK G DI ACGQL ++ D+ S
Sbjct: 333 RKTRGDDIDAACGQLAGDVQDRTS 356
>sp|Q8G481|RLMN_BIFLO Probable dual-specificity RNA methyltransferase RlmN
OS=Bifidobacterium longum (strain NCC 2705) GN=rlmN PE=3
SV=1
Length = 389
Score = 200 bits (509), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 167/281 (59%), Gaps = 32/281 (11%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E+V+MRY + R+TLCISSQVGC M C FCATG +G N+S+
Sbjct: 122 DGSLIESVLMRYPT--------------RTTLCISSQVGCGMDCPFCATGKLGLTRNMST 167
Query: 65 GEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQ 111
GEI+EQ+ A+++ + N+VFMGMGEP+ NY +++ AVR ++ +P F
Sbjct: 168 GEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFG 227
Query: 112 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171
+S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P + F +++++A
Sbjct: 228 ISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAA 287
Query: 172 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFR 228
+Y S++++ IEY ++ G+ND+ +HA L K L + VN IP NPI S++
Sbjct: 288 HDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWT 346
Query: 229 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269
S + F +IL + I T+R GQDI GACGQL
Sbjct: 347 ASKPEDEQRFLEILHRA-GITATLRDTRGQDIDGACGQLAA 386
>sp|Q0A989|RLMN_ALHEH Dual-specificity RNA methyltransferase RlmN OS=Alkalilimnicola
ehrlichei (strain MLHE-1) GN=rlmN PE=3 SV=1
Length = 360
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 111/253 (43%), Positives = 158/253 (62%), Gaps = 10/253 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ-LVHASRLS----NIRNV 83
P R TLC+SSQVGC + C+FC+T GF NLS+ EI+ Q V +L+ I NV
Sbjct: 94 PDSGRGTLCVSSQVGCALDCSFCSTAQQGFNRNLSTAEIIGQYYVAYDQLTGTGEQITNV 153
Query: 84 VFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 142
VFMGMGEPL N A++ AVR+MT + +S +++T+ST G+V + + ++LAV
Sbjct: 154 VFMGMGEPLLNLEAVIPAVRLMTDDDAYGLSKRKVTISTSGVVTMLERMREQ-TDVSLAV 212
Query: 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQ 201
SLHAP +R +++P R PLE+L+ A Y + ++I EY+MLDGVND++ HAH+
Sbjct: 213 SLHAPNNALRDELVPINRKHPLERLIPACAAYIADKPHRRITWEYVMLDGVNDQDHHAHE 272
Query: 202 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 261
L +LL VNLIPFNP +++R S ++ F +IL+ S+ + T R GQDI
Sbjct: 273 LARLLGDIPSKVNLIPFNPFPG-ARYRCSPRGRILRFVRILQ-SHGLTATTRVTRGQDID 330
Query: 262 GACGQLVVNLPDK 274
GACGQLV + D+
Sbjct: 331 GACGQLVGKVQDR 343
>sp|A1AW44|RLMN_RUTMC Dual-specificity RNA methyltransferase RlmN OS=Ruthia magnifica
subsp. Calyptogena magnifica GN=rlmN PE=3 SV=1
Length = 356
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 156/254 (61%), Gaps = 11/254 (4%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-----IRNV 83
P R TLCISSQVGC + C FC+TG GF NL++ EI+ Q++ ASR N I NV
Sbjct: 97 PEKNRGTLCISSQVGCGLACTFCSTGMQGFNKNLTTAEIIAQVLIASRYLNSKTKRISNV 156
Query: 84 VFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 142
VFMGMGEPL N A+ A ++ L F +S +++T+ST G+V A+ + P ++LAV
Sbjct: 157 VFMGMGEPLLNEHAVYNACDLLLDDLAFGLSRRKVTISTSGVVPAMLRMSERTP-VSLAV 215
Query: 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAH 200
SLHA +R +++P + + LE+L+ A K Y + QK I EY+ML GVND +HA+
Sbjct: 216 SLHASDDHLRNELVPINQKYSLEELLKACKVYLQAGTQKRHILFEYVMLKGVNDSIEHAN 275
Query: 201 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
+L KLL+ +NLIPFN +Q++TSS + FQ IL IRT R+ G+DI
Sbjct: 276 KLVKLLKGISAKINLIPFNSFEK-TQYQTSSAQTIEKFQNILYHQ-GIRTMTRRTRGEDI 333
Query: 261 SGACGQLVVNLPDK 274
GACGQL + DK
Sbjct: 334 GGACGQLAGKVLDK 347
>sp|Q1MQJ3|RLMN_LAWIP Dual-specificity RNA methyltransferase RlmN OS=Lawsonia
intracellularis (strain PHE/MN1-00) GN=rlmN PE=3 SV=1
Length = 358
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/252 (45%), Positives = 153/252 (60%), Gaps = 18/252 (7%)
Query: 28 RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-------- 79
+ G R T C+SSQVGC MGC FC+T TMGF NL++GEIV Q++ A N
Sbjct: 100 KAGNIRITQCLSSQVGCSMGCTFCSTATMGFIRNLTAGEIVSQVLLAKLHLNDNKPDKPI 159
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLP 136
IRN+VFMGMGEPL N L A+ I+ GL F S +RITVST GI I +
Sbjct: 160 IRNIVFMGMGEPLLNLTELTRALHILHSEKGLNF--SARRITVSTCGIKKGIQALSEN-- 215
Query: 137 GLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDE 195
GL LA+SLHA Q++R IMP A + L++L++ LK Y ++KI EY++L G+ND
Sbjct: 216 GLAFLALSLHASNQELRSTIMPKAAKWDLKELIDTLKNYSLKKREKITFEYLLLGGINDS 275
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA +L KL+ + +NLIP+NP + +++ + FQK+L S I T +RK
Sbjct: 276 PEHAKELAKLITDIKGKLNLIPYNP-AQGQPYLKPTEENILKFQKVL-WSKGIVTILRKS 333
Query: 256 MGQDISGACGQL 267
GQDI+ ACGQL
Sbjct: 334 KGQDINAACGQL 345
>sp|Q5WWH4|RLMN_LEGPL Dual-specificity RNA methyltransferase RlmN OS=Legionella
pneumophila (strain Lens) GN=rlmN PE=3 SV=1
Length = 382
Score = 199 bits (505), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 160/259 (61%), Gaps = 14/259 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSN-------- 79
P R TLC+SSQVGC + C+FC+T GF NLS+ EI+ Q+ A+R LS+
Sbjct: 99 PEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNDGTHDKK 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A+ I M L + +S +R+T+ST G++ + + P +
Sbjct: 159 ITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVIPEMERLREVSP-V 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +
Sbjct: 218 ALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPE 277
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL KLL VNLIPFNP ++Q++ SS + + +F+ L + I T RK G
Sbjct: 278 HASQLIKLLHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRG 335
Query: 258 QDISGACGQLVVNLPDKIS 276
DI ACGQL + DK S
Sbjct: 336 DDIDAACGQLAGEVKDKTS 354
>sp|Q603C0|RLMN_METCA Dual-specificity RNA methyltransferase RlmN OS=Methylococcus
capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
GN=rlmN PE=3 SV=1
Length = 366
Score = 198 bits (504), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 110/252 (43%), Positives = 160/252 (63%), Gaps = 9/252 (3%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL-VHASRLSN---IRNVV 84
P R+TLC+SSQVGC + C+FC+T GF NL++ EI+ QL V RL I NVV
Sbjct: 107 PDEGRNTLCVSSQVGCSLECSFCSTARQGFNRNLTTAEIIGQLWVAQHRLDEEQRISNVV 166
Query: 85 FMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 143
MGMGEPL N+ +V A R+ M + +S +R+T+ST GIV A+++ +++ ++LAVS
Sbjct: 167 LMGMGEPLLNFGNVVAATRLMMDDFAYGLSKRRVTLSTSGIVPALDRL-AEVSDISLAVS 225
Query: 144 LHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQL 202
LHAP +R +++P R +P+ +L+ A K Y +++K+ EY+MLDGVND +HA L
Sbjct: 226 LHAPDDTLRNELVPINRKYPIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARAL 285
Query: 203 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 262
+LL VNLIPFNP + S +R S + ++ F + L+ + I TT RK G+DI
Sbjct: 286 VRLLSHVPSKVNLIPFNPFPN-SAYRCSHPETIARFAQTLQDAGLI-TTTRKTRGRDIDA 343
Query: 263 ACGQLVVNLPDK 274
ACGQLV + D+
Sbjct: 344 ACGQLVGKVNDR 355
>sp|A8AD69|RLMN_CITK8 Dual-specificity RNA methyltransferase RlmN OS=Citrobacter koseri
(strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rlmN
PE=3 SV=1
Length = 388
Score = 198 bits (503), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P R + +E ++A++ Y + S Q ++ IEY+MLD +ND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINRKYNIETFLDAVRRYLQKSNANQGRVTIEYVMLDHINDG 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>sp|Q5ZV93|RLMN_LEGPH Dual-specificity RNA methyltransferase RlmN OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=rlmN PE=3 SV=2
Length = 382
Score = 198 bits (503), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 160/259 (61%), Gaps = 14/259 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSN-------- 79
P R TLC+SSQVGC + C+FC+T GF NLS+ EI+ Q+ A+R LS+
Sbjct: 99 PEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKK 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A+ I M L + +S +R+T+ST G++ + + P +
Sbjct: 159 ITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-V 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +
Sbjct: 218 ALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPE 277
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL KLL VNLIPFNP ++Q++ SS + + +F+ L + I T RK G
Sbjct: 278 HASQLIKLLHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRG 335
Query: 258 QDISGACGQLVVNLPDKIS 276
DI ACGQL + DK S
Sbjct: 336 DDIDAACGQLAGEVKDKTS 354
>sp|Q5X516|RLMN_LEGPA Dual-specificity RNA methyltransferase RlmN OS=Legionella
pneumophila (strain Paris) GN=rlmN PE=3 SV=1
Length = 382
Score = 198 bits (503), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 160/259 (61%), Gaps = 14/259 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSN-------- 79
P R TLC+SSQVGC + C+FC+T GF NLS+ EI+ Q+ A+R LS+
Sbjct: 99 PEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKK 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A+ I M L + +S +R+T+ST G++ + + P +
Sbjct: 159 ITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-V 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +
Sbjct: 218 ALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPE 277
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA QL KLL VNLIPFNP ++Q++ SS + + +F+ L + I T RK G
Sbjct: 278 HASQLIKLLHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRG 335
Query: 258 QDISGACGQLVVNLPDKIS 276
DI ACGQL + DK S
Sbjct: 336 DDIDAACGQLAGEVKDKTS 354
>sp|Q5SGZ3|RLMN_THET8 Probable dual-specificity RNA methyltransferase RlmN OS=Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rlmN
PE=3 SV=1
Length = 355
Score = 197 bits (502), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 161/283 (56%), Gaps = 22/283 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G EAV M Y++ R T+C+S+ VGC GC FCATG +GF NL++
Sbjct: 84 DGKKTEAVYMPYEN--------------RKTVCLSTMVGCPAGCTFCATGALGFGRNLTA 129
Query: 65 GEIVEQLV---HASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRIT 118
EI++QL+ + LS IRNVV MGMGEPL N +++AVRIM +SP+R+T
Sbjct: 130 AEILDQLLTIAYHQGLSPREIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALSPRRVT 189
Query: 119 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178
+STVGI I + + G+ LA+SLHAP + R +I+P A +P+ ++M A++ Y +
Sbjct: 190 LSTVGIPKGIYRLAEEDLGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMEAVRHYHAKT 249
Query: 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 238
++++ EY +L GVND A L KLL+ VNLIPFNP T ++
Sbjct: 250 KRRVTFEYTLLKGVNDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVVGTPRAGVLAFA 309
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 281
+++ R + T++R GQD+ ACGQL + +P ++ P
Sbjct: 310 EELKR--LGVPTSIRWSRGQDVGAACGQLALKVPRPLTLTPLP 350
>sp|Q72HC1|RLMN_THET2 Probable dual-specificity RNA methyltransferase RlmN OS=Thermus
thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
GN=rlmN PE=3 SV=1
Length = 355
Score = 197 bits (502), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 161/283 (56%), Gaps = 22/283 (7%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G EAV M Y++ R T+C+S+ VGC GC FCATG +GF NL++
Sbjct: 84 DGKKTEAVYMPYEN--------------RKTVCLSTMVGCPAGCTFCATGALGFGRNLTA 129
Query: 65 GEIVEQLV---HASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRIT 118
EI++QL+ + LS IRNVV MGMGEPL N +++AVRIM +SP+R+T
Sbjct: 130 AEILDQLLTIAYHQGLSPREIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALSPRRVT 189
Query: 119 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178
+STVGI I + + G+ LA+SLHAP + R +I+P A +P+ ++M A++ Y +
Sbjct: 190 LSTVGIPKGIYRLAEEDLGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMEAVRHYHAKT 249
Query: 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 238
++++ EY +L GVND A L KLL+ VNLIPFNP T ++
Sbjct: 250 KRRVTFEYTLLKGVNDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVAGTPKAGVLAFA 309
Query: 239 QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 281
+++ R + T++R GQD+ ACGQL + +P ++ P
Sbjct: 310 EELKR--LGVPTSIRWSRGQDVGAACGQLALKVPRPLTLTPLP 350
>sp|Q2SDW1|RLMN_HAHCH Dual-specificity RNA methyltransferase RlmN OS=Hahella chejuensis
(strain KCTC 2396) GN=rlmN PE=3 SV=1
Length = 378
Score = 197 bits (501), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 157/258 (60%), Gaps = 15/258 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR------LSNIR- 81
P R TLC+SSQ+GC + C+FC+TG GF NLSS EI+ QL A+R LS R
Sbjct: 101 PDNGRGTLCVSSQIGCSLDCSFCSTGKQGFNRNLSSAEIIGQLWIAARSFGDYDLSKERY 160
Query: 82 --NVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
N+VFMGMGEPL N+ +V A + M F +S +R+TVST G+V A++K D+ +
Sbjct: 161 VTNIVFMGMGEPLLNFDNVVRACDVMMDDFGFGISKRRLTVSTSGLVPALDKL-GDVTDV 219
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEE 196
+LA+SLHAP +R ++P + +P+E+L+ A Y + + +++I +EY ++ GVND E
Sbjct: 220 SLAISLHAPNNSLRDVLVPVNKKYPIEELLAACHRYLGKLSDKRRITVEYTLIAGVNDSE 279
Query: 197 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256
HAH+L LL +NLIPFNP + S + S + FQK+L + + TVR
Sbjct: 280 THAHELRDLLRDLPCKINLIPFNPFPN-SGYERPSRNATLRFQKVLSDAGYV-ATVRTTR 337
Query: 257 GQDISGACGQLVVNLPDK 274
G DI ACGQLV + D+
Sbjct: 338 GDDIDAACGQLVGRVEDR 355
>sp|A5CX33|RLMN_VESOH Dual-specificity RNA methyltransferase RlmN OS=Vesicomyosocius
okutanii subsp. Calyptogena okutanii (strain HA) GN=rlmN
PE=3 SV=1
Length = 356
Score = 197 bits (501), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 161/261 (61%), Gaps = 14/261 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-----IRNV 83
P R TLCISSQVGC + C FC+TG GF NL++ EI+ Q++ A++ N I N+
Sbjct: 97 PEKDRGTLCISSQVGCALACTFCSTGMQGFNKNLTTAEIIAQVLIANKYLNSKTKRISNI 156
Query: 84 VFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 142
VFMGMGEPL N A+ A ++ L F +S +++T+ST GIV +I + P ++LA+
Sbjct: 157 VFMGMGEPLLNEQAVYNACDLLLDDLAFGLSRRKVTISTSGIVPSILRMSKRTP-VSLAI 215
Query: 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAH 200
SLHAP +R +++P + + +E+L+ A K Y Q+ I EY+ML VND +HA+
Sbjct: 216 SLHAPNNQLRDKLVPVNQKYSIEELLKACKVYLNAGTQERHILFEYVMLKDVNDSTEHAN 275
Query: 201 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
+L KLL+ VNLIPFN +Q+++S+ + FQ IL IRT +R+ G+DI
Sbjct: 276 KLAKLLKAISAKVNLIPFNSFER-TQYQSSNAQTIEKFQDILYQQ-GIRTMMRRTRGEDI 333
Query: 261 SGACGQL---VVNLPDKISAK 278
GACGQL V+N K++A+
Sbjct: 334 DGACGQLAGKVLNKTKKLNAR 354
>sp|C1DD41|RLMN_LARHH Dual-specificity RNA methyltransferase RlmN OS=Laribacter
hongkongensis (strain HLHK9) GN=rlmN PE=3 SV=1
Length = 366
Score = 197 bits (501), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 157/260 (60%), Gaps = 13/260 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------I 80
P R TLC+SSQVGC + C FC+TG GF NLS+ EI+ QL A++ I
Sbjct: 96 PEDDRGTLCVSSQVGCALECTFCSTGRQGFNRNLSTAEIIGQLWWANKSMGVTPKNERVI 155
Query: 81 RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139
NVV MGMGEPL NY +V A+RIM + +S +R+T+ST G+V A+++ D P +
Sbjct: 156 SNVVMMGMGEPLANYDNVVAAMRIMLDDHGYGLSRRRVTLSTSGLVPAMDRLREDCP-VA 214
Query: 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQH 198
LAVSLHAP +R +I+P + +PL +L+ A + Y +K + + EY+MLD +ND +H
Sbjct: 215 LAVSLHAPNDRIRDEIVPINKKYPLRELLAACERYLEKAPRDFVTFEYVMLDQINDRPEH 274
Query: 199 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 258
A +L L+ NLIPFNP + S + +S++ V +F+ IL + I TTVRK G+
Sbjct: 275 ARELVALVRDVPCKFNLIPFNPFPN-SGYGRASNNAVRAFRDILAEAGYI-TTVRKTRGE 332
Query: 259 DISGACGQLVVNLPDKISAK 278
DI ACGQL + DK K
Sbjct: 333 DIDAACGQLAGQVQDKTQRK 352
>sp|Q8D1Y5|RLMN_WIGBR Dual-specificity RNA methyltransferase RlmN OS=Wigglesworthia
glossinidia brevipalpis GN=rlmN PE=3 SV=1
Length = 382
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/264 (42%), Positives = 165/264 (62%), Gaps = 16/264 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLCISSQ+GC + C FCAT GF NL+S EI+ Q+ +A ++ N
Sbjct: 118 PEINRATLCISSQIGCALNCKFCATSYQGFNRNLNSYEIISQIWYAMKIINDRNNFKLKK 177
Query: 80 IRNVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I N+V MGMGEPL N LV A++ I+ F +S +RIT+ST GI I K L +
Sbjct: 178 ITNIVMMGMGEPLLNLKNLVPAIKIILDNYGFGLSKRRITISTAGISPVIKKL-GKLIDV 236
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDE 195
LA+SLHAP +R +IMP + + ++ ++ + K+Y K ++ KI IEYIML+ +ND+
Sbjct: 237 KLAISLHAPNDIIRNKIMPINKKYNIKSILLSAKKYISTSKANKGKISIEYIMLNEINDK 296
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HA+QL L+ +NLIP+NP V +++ S+ +K+++F KIL + I TT+RKQ
Sbjct: 297 TEHAYQLINCLKNIPCKINLIPWNPFPYV-KYKCSNFNKINNFYKIL-IKHGITTTIRKQ 354
Query: 256 MGQDISGACGQLVVNLPDKISAKS 279
G DI ACGQL N+ ++I+ ++
Sbjct: 355 RGIDIKAACGQLSGNVINRINKRN 378
>sp|A1VNF1|RLMN_POLNA Dual-specificity RNA methyltransferase RlmN OS=Polaromonas
naphthalenivorans (strain CJ2) GN=rlmN PE=3 SV=1
Length = 382
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/264 (43%), Positives = 154/264 (58%), Gaps = 19/264 (7%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R TLCISSQ GC +GC FC+TG GF NL++GEI+ QL A
Sbjct: 96 PETDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIISQLWFAEHFLRKHLGRNERV 155
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL NY+ L+ A+++M + +S +R+TVST G+V I++ D P +
Sbjct: 156 ISNVVMMGMGEPLQNYSQLLPALKVMLNDHGYGLSRRRVTVSTSGVVPMIDRLAKDCP-V 214
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQ 197
LAVSLHAP +R ++P + +P+ +L+ A YQ + + I EY MLDGVND+ +
Sbjct: 215 ALAVSLHAPQDALRSNLVPLNKKYPIAELLEACTRYQSAAPRDFITFEYCMLDGVNDQPE 274
Query: 198 HAHQLGKLLET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252
HA QL L++T NLIPFNP + R S +V +F KIL + I TTV
Sbjct: 275 HARQLVALMKTHAANGLSCKFNLIPFNPFPASGLLR-SDMPQVMAFAKILMDA-GIITTV 332
Query: 253 RKQMGQDISGACGQLVVNLPDKIS 276
RK G DI ACGQL ++ D+ S
Sbjct: 333 RKTRGDDIDAACGQLAGDVQDRTS 356
>sp|A5IC42|RLMN_LEGPC Dual-specificity RNA methyltransferase RlmN OS=Legionella
pneumophila (strain Corby) GN=rlmN PE=3 SV=1
Length = 382
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/260 (42%), Positives = 163/260 (62%), Gaps = 16/260 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSN-------- 79
P R TLC+SSQVGC + C+FC+T GF NLS+ EI+ Q+ A+R LS+
Sbjct: 99 PEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGAHDKK 158
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N+ +V A+ I M L + +S +R+T+ST G++ + + P +
Sbjct: 159 ITNVVMMGMGEPLLNFDNVVSAMSIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-V 217
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQ 197
LAVSLHAP ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +
Sbjct: 218 ALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPE 277
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ-KILRGSYNIRTTVRKQM 256
HA QL KLL VNLIPFNP ++Q++ SS + + +F+ K+++ + I T RK
Sbjct: 278 HASQLIKLLHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLIK--HGINTITRKTR 334
Query: 257 GQDISGACGQLVVNLPDKIS 276
G DI ACGQL + DK +
Sbjct: 335 GDDIDAACGQLAGEVKDKTT 354
>sp|A4WD95|RLMN_ENT38 Dual-specificity RNA methyltransferase RlmN OS=Enterobacter sp.
(strain 638) GN=rlmN PE=3 SV=1
Length = 388
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRP 173
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y S Q ++ IEY+MLD VNDE
Sbjct: 233 ALAISLHAPNDEIRDEIVPVNKKYNIETFLAAVRRYLAKSNANQGRVTIEYVMLDHVNDE 292
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TDHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-DYGFTTIVRKT 350
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>sp|Q7NIV3|RLMN_GLOVI Probable dual-specificity RNA methyltransferase RlmN OS=Gloeobacter
violaceus (strain PCC 7421) GN=rlmN PE=3 SV=1
Length = 348
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 151/241 (62%), Gaps = 5/241 (2%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFM 86
P R T+C+SSQVGC M C FCATG GF NL EIV+Q+ V + +VVFM
Sbjct: 95 PAAERLTVCVSSQVGCPMACRFCATGQSGFARNLGVHEIVDQVLTVQEGFGRRVSHVVFM 154
Query: 87 GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 146
GMGEPL N A+V+A+R++ G + ++ITVSTVG+ I + + + LAVSLHA
Sbjct: 155 GMGEPLLNLGAVVQALRVLNG-DIGIGQRQITVSTVGVPGQIRRLGTYKLQITLAVSLHA 213
Query: 147 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 206
P QD+R +++P A+ +P+E+L+ ++Y + + +++ EY +L G+NDE HA +L +L
Sbjct: 214 PNQDLRLKLIPTAQHYPIEELLEDCRDYVETTNRRVSFEYTLLAGINDEPHHARELAAIL 273
Query: 207 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266
FQ VNLIP+NPI V ++ + +V +F++ L + I +VR G + + ACGQ
Sbjct: 274 RGFQSHVNLIPYNPIEGV-EYERPGEARVRAFERELV-RHKIAASVRHTRGLEEAAACGQ 331
Query: 267 L 267
L
Sbjct: 332 L 332
>sp|Q8RFZ9|RLMN_FUSNN Probable dual-specificity RNA methyltransferase RlmN
OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC
25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=rlmN PE=3
SV=1
Length = 358
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 157/273 (57%), Gaps = 15/273 (5%)
Query: 1 MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
+ ++GG +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+
Sbjct: 86 FELEDGGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSGYMR 137
Query: 61 NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114
NLS EI+ Q+ R N+ N+VFMGMGEPL N L +A+ I++ +S
Sbjct: 138 NLSVSEILNQIYTVERRLRKKGENLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISK 197
Query: 115 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174
++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L EY
Sbjct: 198 RKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPINKNFPLEDLSAVLIEY 257
Query: 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 234
QK ++++I EYI++D N E A+ L + F VVNLIP+N + R S K
Sbjct: 258 QKQTKRRITFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGAEHTRPSV-KK 316
Query: 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 267
++ F L+ + T+R++ G DI GACGQL
Sbjct: 317 INKFYIYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>sp|Q8K9P5|RLMN_BUCAP Dual-specificity RNA methyltransferase RlmN OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=rlmN PE=3 SV=1
Length = 363
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 158/258 (61%), Gaps = 14/258 (5%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------SNIR 81
P R+TLC+SSQ+GC + C FCATG GF NL EI+ Q+ A+++ S I
Sbjct: 107 PEKKRATLCVSSQIGCSLKCKFCATGQQGFNRNLKVSEIISQIWQANKILKEKKNNSTIT 166
Query: 82 NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNL 140
N+VFMGMGEPL N ++ A++I+ F +S +RIT+ST GIV A+NK + ++L
Sbjct: 167 NIVFMGMGEPLLNLNNVISAIKIILDKNGFGLSKRRITLSTSGIVPALNKLIKKID-VSL 225
Query: 141 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQ 197
A+SLHAP +R IMP + ++ +N++ +Y K+S + +EY+ML G+ND +
Sbjct: 226 AISLHAPNDFIRNSIMPINMKYNIKSFLNSVSKYLKHSHANRGGVTVEYVMLRGINDLNE 285
Query: 198 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 257
HA +LG +L+ +NLIP+N + + F SS ++++ F ILR TT+RK G
Sbjct: 286 HAEELGNILKKIPSKINLIPWNFFKN-ANFICSSKNRINIFANILRKK-GFNTTIRKNRG 343
Query: 258 QDISGACGQLVVNLPDKI 275
QDI ACGQL ++ ++I
Sbjct: 344 QDIGAACGQLTGDIVNRI 361
>sp|B5Z0Y6|RLMN_ECO5E Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rlmN PE=3 SV=1
Length = 384
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP + R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPAAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>sp|Q8XAA4|RLMN_ECO57 Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
O157:H7 GN=rlmN PE=3 SV=3
Length = 384
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP + R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPAAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>sp|Q83K42|RLMN_SHIFL Dual-specificity RNA methyltransferase RlmN OS=Shigella flexneri
GN=rlmN PE=3 SV=1
Length = 384
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPDAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>sp|Q0T202|RLMN_SHIF8 Dual-specificity RNA methyltransferase RlmN OS=Shigella flexneri
serotype 5b (strain 8401) GN=rlmN PE=3 SV=1
Length = 384
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPDAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>sp|Q6D273|RLMN_ERWCT Dual-specificity RNA methyltransferase RlmN OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=rlmN PE=3 SV=1
Length = 398
Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PEEERATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 183
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 302
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVVDR 379
>sp|A6TRW3|RLMN_ALKMQ Probable dual-specificity RNA methyltransferase RlmN
OS=Alkaliphilus metalliredigens (strain QYMF) GN=rlmN
PE=3 SV=1
Length = 352
Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 161/282 (57%), Gaps = 19/282 (6%)
Query: 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 64
+G +E V+M+Y T CIS+QVGC MGC FCA+ T G NL +
Sbjct: 87 DGHIIEGVLMKYKHGF--------------TACISTQVGCAMGCQFCASTTGGLIRNLRA 132
Query: 65 GEIVEQ--LVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 121
GE+++Q L+ + I N+V MG GEPL+NY + ++I+ + + IT+ST
Sbjct: 133 GEMIDQILLMQQDQGERISNIVLMGSGEPLHNYDETIRFLKIVNDPEGLNIGNRHITLST 192
Query: 122 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181
G+V I K + +NLA+SLHAP +R Q MP A+ + +++L+ + +Y +N+ ++
Sbjct: 193 CGLVPEIKKLGALQIPINLAISLHAPNDQLRKQTMPIAQKYTIDQLIQSCYDYLENNNRR 252
Query: 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241
I EY +++ VND E+ AH+L KLL+ VNLIP NPI + ++ S D +V FQ+I
Sbjct: 253 ITFEYALIEDVNDGEKEAHELSKLLKGLLCHVNLIPINPIEERT-YQKSKDSQVKKFQQI 311
Query: 242 LRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 283
L+ S I T+R++MG DI GACGQL D K V
Sbjct: 312 LK-SNGIEATIRREMGTDIQGACGQLRRKYVDDQEKKEISEV 352
>sp|Q3YZ35|RLMN_SHISS Dual-specificity RNA methyltransferase RlmN OS=Shigella sonnei
(strain Ss046) GN=rlmN PE=3 SV=1
Length = 384
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>sp|Q32D45|RLMN_SHIDS Dual-specificity RNA methyltransferase RlmN OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=rlmN PE=3 SV=1
Length = 384
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>sp|Q31XX3|RLMN_SHIBS Dual-specificity RNA methyltransferase RlmN OS=Shigella boydii
serotype 4 (strain Sb227) GN=rlmN PE=3 SV=1
Length = 384
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>sp|B2TXU2|RLMN_SHIB3 Dual-specificity RNA methyltransferase RlmN OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rlmN PE=3
SV=1
Length = 384
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>sp|Q1R8L6|RLMN_ECOUT Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
(strain UTI89 / UPEC) GN=rlmN PE=3 SV=1
Length = 384
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>sp|B1LNH2|RLMN_ECOSM Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rlmN PE=3 SV=1
Length = 384
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>sp|B6I589|RLMN_ECOSE Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
(strain SE11) GN=rlmN PE=3 SV=1
Length = 384
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>sp|P36979|RLMN_ECOLI Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
(strain K12) GN=rlmN PE=1 SV=1
Length = 384
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>sp|B1IWE4|RLMN_ECOLC Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rlmN PE=3 SV=1
Length = 384
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>sp|Q0TEW8|RLMN_ECOL5 Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rlmN PE=3 SV=1
Length = 384
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,488,138
Number of Sequences: 539616
Number of extensions: 4071016
Number of successful extensions: 13494
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 10062
Number of HSP's gapped (non-prelim): 727
length of query: 292
length of database: 191,569,459
effective HSP length: 116
effective length of query: 176
effective length of database: 128,974,003
effective search space: 22699424528
effective search space used: 22699424528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)