Query 022752
Match_columns 292
No_of_seqs 158 out of 1836
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:53:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14461 ribosomal RNA large s 100.0 1E-45 2.2E-50 335.2 29.1 254 2-271 89-365 (371)
2 PRK14462 ribosomal RNA large s 100.0 1.2E-44 2.5E-49 330.4 30.2 265 3-270 80-350 (356)
3 PRK14467 ribosomal RNA large s 100.0 1.3E-44 2.8E-49 330.2 29.6 252 3-270 82-341 (348)
4 PRK14459 ribosomal RNA large s 100.0 1.5E-44 3.1E-49 330.9 29.6 251 3-269 104-370 (373)
5 PRK14466 ribosomal RNA large s 100.0 3.4E-44 7.3E-49 325.0 30.3 251 3-270 86-337 (345)
6 PRK14465 ribosomal RNA large s 100.0 3.1E-44 6.8E-49 325.9 29.0 253 2-269 85-340 (342)
7 TIGR00048 radical SAM enzyme, 100.0 8.6E-44 1.9E-48 326.7 30.7 257 2-274 87-349 (355)
8 PRK14470 ribosomal RNA large s 100.0 1E-43 2.3E-48 323.1 29.6 252 3-270 79-334 (336)
9 PRK14457 ribosomal RNA large s 100.0 2.2E-43 4.7E-48 322.1 29.9 252 2-270 83-342 (345)
10 PRK14468 ribosomal RNA large s 100.0 3.5E-43 7.6E-48 321.3 30.6 259 2-276 75-339 (343)
11 PRK14454 ribosomal RNA large s 100.0 3.2E-43 6.9E-48 321.2 29.7 253 3-271 84-339 (342)
12 PRK14455 ribosomal RNA large s 100.0 7.3E-43 1.6E-47 320.7 29.6 255 2-272 91-351 (356)
13 PRK14469 ribosomal RNA large s 100.0 1.2E-42 2.5E-47 319.1 30.4 257 3-279 84-343 (343)
14 PRK14456 ribosomal RNA large s 100.0 1.2E-42 2.6E-47 319.4 30.3 251 3-269 104-364 (368)
15 PRK14453 chloramphenicol/florf 100.0 2.3E-42 4.9E-47 315.6 29.9 254 2-270 81-342 (347)
16 PRK14460 ribosomal RNA large s 100.0 1.9E-42 4.2E-47 317.4 29.1 255 3-273 84-347 (354)
17 PRK14463 ribosomal RNA large s 100.0 3.8E-42 8.1E-47 314.9 30.4 250 3-269 86-336 (349)
18 PRK11194 ribosomal RNA large s 100.0 2.3E-41 4.9E-46 310.8 29.5 253 3-273 87-352 (372)
19 COG0820 Predicted Fe-S-cluster 100.0 3.8E-41 8.2E-46 301.4 27.2 256 3-274 84-346 (349)
20 PRK14464 ribosomal RNA large s 100.0 1.5E-40 3.3E-45 301.4 24.3 248 3-270 82-329 (344)
21 PRK11145 pflA pyruvate formate 100.0 2.1E-31 4.5E-36 234.6 21.3 211 18-250 11-244 (246)
22 COG1180 PflA Pyruvate-formate 100.0 4.4E-29 9.5E-34 220.5 21.9 210 18-249 25-243 (260)
23 TIGR02493 PFLA pyruvate format 100.0 2.2E-28 4.8E-33 213.9 23.4 206 18-243 6-233 (235)
24 TIGR02494 PFLE_PFLC glycyl-rad 100.0 3E-27 6.4E-32 213.6 19.5 204 19-243 6-292 (295)
25 COG2896 MoaA Molybdenum cofact 100.0 1.2E-26 2.7E-31 207.2 22.3 230 33-276 10-266 (322)
26 PRK00164 moaA molybdenum cofac 99.9 2.2E-25 4.8E-30 204.5 24.1 228 34-275 17-273 (331)
27 PRK13361 molybdenum cofactor b 99.9 3.3E-25 7.2E-30 203.0 24.9 229 34-275 14-269 (329)
28 TIGR01290 nifB nitrogenase cof 99.9 1.8E-25 4E-30 211.0 22.7 203 32-243 24-256 (442)
29 PRK13762 tRNA-modifying enzyme 99.9 4.9E-25 1.1E-29 200.4 23.5 197 42-249 66-294 (322)
30 PRK10076 pyruvate formate lyas 99.9 3.9E-25 8.4E-30 189.7 19.6 179 59-252 16-211 (213)
31 TIGR02668 moaA_archaeal probab 99.9 1.8E-24 4E-29 196.0 24.4 175 34-222 10-189 (302)
32 PLN02951 Molybderin biosynthes 99.9 3.5E-24 7.6E-29 198.8 25.2 226 35-275 59-314 (373)
33 TIGR02666 moaA molybdenum cofa 99.9 5.3E-24 1.1E-28 195.6 24.5 175 35-223 11-195 (334)
34 TIGR02495 NrdG2 anaerobic ribo 99.9 4.7E-24 1E-28 180.7 21.4 179 19-218 7-190 (191)
35 COG0731 Fe-S oxidoreductases [ 99.9 1.3E-23 2.8E-28 185.5 21.8 212 31-250 20-248 (296)
36 PRK05301 pyrroloquinoline quin 99.9 2.6E-22 5.6E-27 187.4 24.0 194 34-242 16-218 (378)
37 TIGR02109 PQQ_syn_pqqE coenzym 99.9 6.3E-22 1.4E-26 183.5 22.9 193 34-241 7-208 (358)
38 TIGR03470 HpnH hopanoid biosyn 99.9 6.5E-22 1.4E-26 180.2 21.8 171 34-222 28-204 (318)
39 COG2100 Predicted Fe-S oxidore 99.9 4E-21 8.8E-26 168.3 19.9 214 20-249 99-331 (414)
40 TIGR03821 AblA_like_1 lysine-2 99.9 6E-20 1.3E-24 167.2 20.9 219 5-258 83-315 (321)
41 TIGR03278 methan_mark_10 putat 99.9 8.2E-20 1.8E-24 170.0 22.2 178 59-250 51-247 (404)
42 PRK13758 anaerobic sulfatase-m 99.8 1.7E-19 3.8E-24 167.9 22.0 181 34-222 4-199 (370)
43 COG1313 PflX Uncharacterized F 99.8 1.5E-19 3.2E-24 156.6 19.6 215 16-250 103-331 (335)
44 TIGR03822 AblA_like_2 lysine-2 99.8 2.1E-18 4.5E-23 157.3 25.3 205 32-257 88-308 (321)
45 PRK13745 anaerobic sulfatase-m 99.8 8.1E-19 1.8E-23 165.5 20.7 183 30-220 9-205 (412)
46 TIGR00238 KamA family protein. 99.8 2.1E-18 4.5E-23 157.8 21.8 207 32-257 113-331 (331)
47 COG0641 AslB Arylsulfatase reg 99.8 3.7E-18 7.9E-23 157.9 19.9 174 41-222 14-196 (378)
48 COG0535 Predicted Fe-S oxidore 99.8 3E-17 6.5E-22 150.8 22.6 176 32-222 17-199 (347)
49 smart00729 Elp3 Elongator prot 99.8 8.5E-18 1.8E-22 143.0 17.0 180 36-222 3-193 (216)
50 TIGR03365 Bsubt_queE 7-cyano-7 99.8 3.5E-17 7.7E-22 143.2 20.7 149 16-189 5-160 (238)
51 TIGR03820 lys_2_3_AblA lysine- 99.8 1E-16 2.2E-21 149.0 23.6 204 32-257 108-326 (417)
52 PF04055 Radical_SAM: Radical 99.8 5.1E-17 1.1E-21 132.6 17.3 157 39-206 2-166 (166)
53 COG5014 Predicted Fe-S oxidore 99.7 3.9E-17 8.5E-22 131.4 13.5 163 32-210 42-213 (228)
54 cd01335 Radical_SAM Radical SA 99.7 2.6E-16 5.7E-21 132.1 18.0 172 40-222 3-182 (204)
55 TIGR02491 NrdG anaerobic ribon 99.7 1.6E-17 3.4E-22 136.0 10.1 119 19-150 7-135 (154)
56 PRK07094 biotin synthase; Prov 99.7 1.2E-14 2.7E-19 132.9 23.6 193 37-243 42-244 (323)
57 PF13353 Fer4_12: 4Fe-4S singl 99.7 1.5E-16 3.3E-21 127.6 8.5 89 30-127 4-97 (139)
58 PRK11121 nrdG anaerobic ribonu 99.6 3.4E-15 7.5E-20 122.1 10.1 94 20-126 9-109 (154)
59 COG1509 KamA Lysine 2,3-aminom 99.6 3.2E-13 7E-18 121.2 22.9 219 20-259 99-332 (369)
60 PRK09240 thiH thiamine biosynt 99.6 2.2E-13 4.8E-18 126.7 21.1 198 36-243 76-286 (371)
61 TIGR02826 RNR_activ_nrdG3 anae 99.6 2.8E-14 6E-19 115.5 12.6 84 31-127 15-101 (147)
62 TIGR00433 bioB biotin syntheta 99.6 9.5E-13 2.1E-17 118.9 23.6 194 34-243 28-236 (296)
63 COG0602 NrdG Organic radical a 99.6 1.3E-14 2.9E-19 124.4 8.9 96 17-126 7-111 (212)
64 PF13394 Fer4_14: 4Fe-4S singl 99.5 1.7E-14 3.7E-19 112.7 6.8 83 41-127 5-93 (119)
65 TIGR02026 BchE magnesium-proto 99.5 2.4E-12 5.1E-17 124.3 21.6 174 37-221 196-378 (497)
66 PRK06256 biotin synthase; Vali 99.5 3.9E-12 8.5E-17 117.0 21.9 189 41-243 65-265 (336)
67 TIGR01125 MiaB-like tRNA modif 99.5 4.7E-12 1E-16 120.3 20.5 181 34-222 135-328 (430)
68 COG2108 Uncharacterized conser 99.5 7.1E-13 1.5E-17 117.0 12.7 162 23-211 18-193 (353)
69 PRK08508 biotin synthase; Prov 99.5 9.5E-12 2E-16 111.5 20.2 194 35-243 8-214 (279)
70 PRK14862 rimO ribosomal protei 99.5 6.1E-12 1.3E-16 119.6 19.7 179 33-222 138-339 (440)
71 TIGR03699 mena_SCO4550 menaqui 99.5 3.9E-12 8.4E-17 117.3 17.3 198 38-243 45-263 (340)
72 PRK15108 biotin synthase; Prov 99.4 3.2E-11 6.9E-16 111.2 22.6 189 40-243 49-251 (345)
73 TIGR03471 HpnJ hopanoid biosyn 99.4 1.4E-11 3E-16 118.4 20.9 173 36-221 198-378 (472)
74 PLN02389 biotin synthase 99.4 3.1E-11 6.7E-16 112.3 22.5 187 41-243 90-293 (379)
75 PRK14338 (dimethylallyl)adenos 99.4 2.2E-11 4.7E-16 116.5 21.5 180 32-222 153-348 (459)
76 TIGR03551 F420_cofH 7,8-dideme 99.4 1.1E-11 2.3E-16 114.5 18.3 196 37-243 42-265 (343)
77 PRK05481 lipoyl synthase; Prov 99.4 3.8E-11 8.1E-16 108.1 21.2 203 33-249 52-265 (289)
78 TIGR00423 radical SAM domain p 99.4 2.4E-11 5.1E-16 110.6 20.1 197 36-243 7-230 (309)
79 PRK05799 coproporphyrinogen II 99.4 6.2E-11 1.3E-15 110.6 23.3 178 34-221 4-191 (374)
80 TIGR02351 thiH thiazole biosyn 99.4 1.9E-11 4.1E-16 113.7 19.5 198 36-243 75-285 (366)
81 TIGR00539 hemN_rel putative ox 99.4 3.8E-11 8.2E-16 111.5 21.5 177 35-221 2-192 (360)
82 PRK09249 coproporphyrinogen II 99.4 7E-11 1.5E-15 113.0 23.3 178 32-219 48-241 (453)
83 PRK13347 coproporphyrinogen II 99.4 9.7E-11 2.1E-15 111.9 23.6 181 29-219 46-242 (453)
84 PRK06245 cofG FO synthase subu 99.4 2.5E-11 5.3E-16 111.8 18.6 194 36-243 14-236 (336)
85 PRK06267 hypothetical protein; 99.4 9.1E-11 2E-15 108.4 22.1 191 37-243 30-231 (350)
86 PRK08446 coproporphyrinogen II 99.4 8E-11 1.7E-15 108.9 21.3 202 35-249 2-222 (350)
87 TIGR00538 hemN oxygen-independ 99.4 1E-10 2.2E-15 111.9 22.3 178 31-218 47-240 (455)
88 PRK05660 HemN family oxidoredu 99.4 1.3E-10 2.9E-15 108.5 22.3 178 34-221 7-199 (378)
89 KOG2876 Molybdenum cofactor bi 99.4 7.3E-13 1.6E-17 113.7 5.4 175 34-222 11-193 (323)
90 TIGR01579 MiaB-like-C MiaB-lik 99.4 9.1E-11 2E-15 111.0 19.9 177 34-222 138-331 (414)
91 TIGR00510 lipA lipoate synthas 99.4 3.1E-10 6.8E-15 102.3 22.4 203 33-249 62-276 (302)
92 PRK08207 coproporphyrinogen II 99.4 4E-10 8.6E-15 108.2 24.3 207 32-248 162-397 (488)
93 PRK12928 lipoyl synthase; Prov 99.3 1.3E-10 2.9E-15 104.4 19.7 204 33-249 59-273 (290)
94 PRK14331 (dimethylallyl)adenos 99.3 1.9E-10 4.1E-15 109.5 20.3 179 32-222 144-338 (437)
95 TIGR00089 RNA modification enz 99.3 2.2E-10 4.9E-15 108.8 20.8 181 33-222 138-332 (429)
96 TIGR01578 MiaB-like-B MiaB-lik 99.3 1.8E-10 4E-15 109.0 19.4 180 32-222 131-326 (420)
97 PRK14340 (dimethylallyl)adenos 99.3 2.4E-10 5.2E-15 108.8 20.2 179 33-222 148-341 (445)
98 PRK14334 (dimethylallyl)adenos 99.3 4.3E-10 9.4E-15 107.1 21.9 182 31-222 135-330 (440)
99 PRK14332 (dimethylallyl)adenos 99.3 6.1E-10 1.3E-14 106.2 21.9 180 34-222 154-344 (449)
100 PRK05628 coproporphyrinogen II 99.3 1.3E-09 2.8E-14 101.9 23.5 177 34-220 3-199 (375)
101 PRK08599 coproporphyrinogen II 99.3 7.5E-10 1.6E-14 103.5 22.0 177 34-220 2-191 (377)
102 PRK14325 (dimethylallyl)adenos 99.3 7.6E-10 1.6E-14 105.6 21.5 177 33-221 146-341 (444)
103 PRK14327 (dimethylallyl)adenos 99.3 1.4E-09 3.1E-14 104.8 22.6 179 31-221 209-404 (509)
104 PRK08208 coproporphyrinogen II 99.3 1.2E-09 2.7E-14 103.7 21.9 180 32-221 38-233 (430)
105 PRK14336 (dimethylallyl)adenos 99.3 1E-09 2.2E-14 103.8 21.0 178 33-222 123-317 (418)
106 PLN02428 lipoic acid synthase 99.2 2.1E-09 4.6E-14 98.3 21.8 203 33-249 102-316 (349)
107 PRK14335 (dimethylallyl)adenos 99.2 2E-09 4.4E-14 102.9 22.2 179 34-222 152-351 (455)
108 TIGR01574 miaB-methiolase tRNA 99.2 1.1E-09 2.4E-14 104.3 19.4 178 32-221 143-339 (438)
109 TIGR03700 mena_SCO4494 putativ 99.2 1.9E-09 4.2E-14 99.7 19.8 196 37-243 51-272 (351)
110 PRK14329 (dimethylallyl)adenos 99.2 2.3E-09 5E-14 102.8 20.6 180 32-222 166-366 (467)
111 PRK14328 (dimethylallyl)adenos 99.2 1.5E-09 3.3E-14 103.4 19.2 177 33-221 146-339 (439)
112 PRK14339 (dimethylallyl)adenos 99.2 2.8E-09 6E-14 100.9 20.7 179 32-222 125-323 (420)
113 TIGR01212 radical SAM protein, 99.2 9.1E-09 2E-13 93.3 23.2 193 41-243 25-249 (302)
114 PRK14337 (dimethylallyl)adenos 99.2 4.5E-09 9.7E-14 100.3 21.4 180 33-222 147-342 (446)
115 TIGR01210 conserved hypothetic 99.2 1.8E-08 3.9E-13 91.8 24.3 182 30-221 12-213 (313)
116 PRK14326 (dimethylallyl)adenos 99.1 5.4E-09 1.2E-13 101.0 20.5 176 34-221 157-349 (502)
117 PRK14330 (dimethylallyl)adenos 99.1 4.4E-09 9.6E-14 100.1 19.7 178 34-222 140-333 (434)
118 COG0621 MiaB 2-methylthioadeni 99.1 7.7E-09 1.7E-13 97.1 20.5 183 31-222 141-338 (437)
119 TIGR03550 F420_cofG 7,8-dideme 99.1 2.8E-09 6.2E-14 97.5 16.8 196 36-243 6-232 (322)
120 COG1625 Fe-S oxidoreductase, r 99.1 4.9E-09 1.1E-13 96.1 17.6 220 48-274 44-284 (414)
121 PRK07379 coproporphyrinogen II 99.1 2.5E-08 5.4E-13 93.9 22.7 208 31-249 8-246 (400)
122 PRK05904 coproporphyrinogen II 99.1 1.6E-08 3.4E-13 93.7 20.5 179 32-221 5-195 (353)
123 PRK08629 coproporphyrinogen II 99.1 2.8E-08 6E-13 94.4 22.3 182 31-221 50-239 (433)
124 COG1964 Predicted Fe-S oxidore 99.1 2.8E-09 6.2E-14 98.2 14.5 153 51-221 78-243 (475)
125 PRK09058 coproporphyrinogen II 99.1 4.5E-08 9.7E-13 93.5 22.9 182 30-221 58-255 (449)
126 PRK06582 coproporphyrinogen II 99.1 6.9E-08 1.5E-12 90.6 23.6 177 33-220 11-201 (390)
127 PRK14333 (dimethylallyl)adenos 99.1 1.1E-08 2.3E-13 97.8 18.4 177 35-222 149-348 (448)
128 PRK07360 FO synthase subunit 2 99.1 1.5E-08 3.3E-13 94.4 19.0 164 38-212 64-245 (371)
129 PRK09057 coproporphyrinogen II 99.0 7.5E-08 1.6E-12 90.1 22.9 203 34-248 5-233 (380)
130 PRK08445 hypothetical protein; 99.0 3E-08 6.6E-13 91.5 19.8 195 38-243 46-268 (348)
131 PRK06294 coproporphyrinogen II 99.0 1.4E-07 3E-12 88.0 22.9 174 34-221 7-195 (370)
132 PRK08898 coproporphyrinogen II 99.0 2.1E-07 4.5E-12 87.6 23.1 178 34-221 20-213 (394)
133 PRK00955 hypothetical protein; 99.0 4.2E-08 9.1E-13 95.7 18.6 182 32-221 290-519 (620)
134 PRK08444 hypothetical protein; 99.0 1.3E-07 2.9E-12 87.3 20.6 196 38-243 53-271 (353)
135 COG0502 BioB Biotin synthase a 98.9 2E-07 4.3E-12 84.5 19.0 194 33-243 51-258 (335)
136 PTZ00413 lipoate synthase; Pro 98.9 1.2E-06 2.7E-11 80.3 23.8 205 33-249 149-364 (398)
137 PRK05927 hypothetical protein; 98.9 1E-07 2.2E-12 88.0 16.7 195 38-243 49-269 (350)
138 PRK09613 thiH thiamine biosynt 98.9 5.6E-07 1.2E-11 85.9 22.0 209 39-254 89-319 (469)
139 COG1533 SplB DNA repair photol 98.9 2E-07 4.4E-12 83.9 17.7 167 36-212 31-214 (297)
140 PRK01254 hypothetical protein; 98.8 4.8E-07 1E-11 88.2 20.1 189 28-221 366-598 (707)
141 COG1032 Fe-S oxidoreductase [E 98.8 2.1E-07 4.6E-12 89.2 15.8 181 35-222 199-397 (490)
142 COG1856 Uncharacterized homolo 98.7 2.3E-06 5E-11 72.4 17.5 188 41-244 18-216 (275)
143 PRK05926 hypothetical protein; 98.7 5.8E-07 1.3E-11 83.6 15.5 161 40-212 74-251 (370)
144 PRK09234 fbiC FO synthase; Rev 98.7 1.9E-06 4.2E-11 87.6 20.5 195 38-243 530-752 (843)
145 TIGR03279 cyano_FeS_chp putati 98.6 2.8E-06 6E-11 79.6 17.2 114 120-239 123-246 (433)
146 TIGR01211 ELP3 histone acetylt 98.6 2E-05 4.4E-10 76.3 22.8 205 31-243 65-330 (522)
147 PRK09234 fbiC FO synthase; Rev 98.6 3.3E-06 7.2E-11 85.9 18.0 193 36-243 73-301 (843)
148 COG1060 ThiH Thiamine biosynth 98.4 1.6E-05 3.6E-10 73.7 17.5 197 37-243 62-283 (370)
149 COG0635 HemN Coproporphyrinoge 98.3 0.00023 4.9E-09 67.5 20.9 176 33-218 34-226 (416)
150 COG1243 ELP3 Histone acetyltra 98.2 0.00016 3.5E-09 67.5 18.1 204 31-241 64-320 (515)
151 COG0320 LipA Lipoate synthase 98.2 0.00036 7.8E-09 61.1 19.0 204 32-248 69-281 (306)
152 COG1244 Predicted Fe-S oxidore 98.2 0.00047 1E-08 61.8 19.9 188 22-221 39-245 (358)
153 COG2516 Biotin synthase-relate 98.0 0.00042 9E-09 62.0 15.2 196 33-239 28-246 (339)
154 KOG1160 Fe-S oxidoreductase [E 97.8 0.00023 5E-09 66.0 11.8 114 84-208 358-471 (601)
155 cd03174 DRE_TIM_metallolyase D 97.7 0.013 2.7E-07 51.8 20.4 183 59-259 13-204 (265)
156 KOG2672 Lipoate synthase [Coen 97.6 0.003 6.5E-08 55.5 14.4 198 34-249 112-325 (360)
157 COG1242 Predicted Fe-S oxidore 97.5 0.046 9.9E-07 48.4 20.3 196 47-254 45-264 (312)
158 COG1031 Uncharacterized Fe-S o 97.2 0.051 1.1E-06 51.2 18.5 167 33-208 182-387 (560)
159 COG4277 Predicted DNA-binding 97.1 0.023 5E-07 50.7 14.3 220 40-268 60-314 (404)
160 KOG2900 Biotin synthase [Coenz 96.3 0.022 4.7E-07 49.6 8.0 159 34-209 85-255 (380)
161 KOG2492 CDK5 activator-binding 95.6 0.37 8.1E-06 44.9 13.1 76 10-88 197-274 (552)
162 KOG4355 Predicted Fe-S oxidore 95.1 0.8 1.7E-05 42.5 13.6 179 34-222 187-381 (547)
163 PF04551 GcpE: GcpE protein; 87.3 6.3 0.00014 36.4 9.9 140 95-271 117-281 (359)
164 TIGR00612 ispG_gcpE 1-hydroxy- 86.4 27 0.00058 32.1 14.7 156 79-272 93-273 (346)
165 COG0821 gcpE 1-hydroxy-2-methy 79.0 53 0.0012 30.2 13.9 35 231-271 238-274 (361)
166 PRK11858 aksA trans-homoaconit 76.8 66 0.0014 30.1 20.4 177 59-258 20-201 (378)
167 KOG2535 RNA polymerase II elon 71.7 86 0.0019 29.1 13.5 66 139-209 249-315 (554)
168 PRK00366 ispG 4-hydroxy-3-meth 70.9 90 0.002 29.0 13.3 39 79-123 101-139 (360)
169 TIGR02090 LEU1_arch isopropylm 70.6 92 0.002 29.0 21.0 178 59-257 16-196 (363)
170 TIGR00190 thiC thiamine biosyn 68.8 59 0.0013 30.7 10.1 49 61-123 136-184 (423)
171 cd07948 DRE_TIM_HCS Saccharomy 67.7 89 0.0019 27.7 21.0 178 59-258 16-197 (262)
172 KOG0180 20S proteasome, regula 67.2 3.5 7.5E-05 34.0 1.6 68 16-89 96-183 (204)
173 COG0813 DeoD Purine-nucleoside 67.1 84 0.0018 27.2 10.8 96 81-190 58-157 (236)
174 cd07939 DRE_TIM_NifV Streptomy 66.2 92 0.002 27.3 21.2 177 60-257 15-194 (259)
175 PF05853 DUF849: Prokaryotic p 65.7 94 0.002 27.7 10.7 163 60-243 21-195 (272)
176 COG2875 CobM Precorrin-4 methy 65.6 20 0.00044 31.2 6.0 48 59-109 56-103 (254)
177 PRK13352 thiamine biosynthesis 65.3 76 0.0016 30.1 10.1 49 61-123 139-187 (431)
178 PRK01076 L-rhamnose isomerase; 64.1 71 0.0015 30.2 9.7 118 58-194 66-192 (419)
179 PF06415 iPGM_N: BPG-independe 63.1 59 0.0013 28.2 8.5 75 165-243 14-91 (223)
180 TIGR02660 nifV_homocitr homoci 61.7 1.4E+02 0.003 27.8 20.4 180 59-259 17-199 (365)
181 COG1212 KdsB CMP-2-keto-3-deox 59.9 1.2E+02 0.0026 26.5 11.0 43 65-108 78-120 (247)
182 PF08902 DUF1848: Domain of un 58.6 1.4E+02 0.0029 26.7 11.6 90 163-252 94-200 (266)
183 COG0329 DapA Dihydrodipicolina 58.4 1.4E+02 0.0031 26.9 12.9 46 62-108 22-69 (299)
184 COG3589 Uncharacterized conser 57.0 1.6E+02 0.0035 27.2 11.2 144 68-250 19-173 (360)
185 COG4015 Predicted dinucleotide 54.9 17 0.00036 30.0 3.5 37 79-125 108-144 (217)
186 PF14824 Sirohm_synth_M: Siroh 54.3 16 0.00034 21.1 2.3 17 114-130 4-20 (30)
187 PRK14477 bifunctional nitrogen 52.8 88 0.0019 33.1 9.4 32 186-217 647-678 (917)
188 smart00642 Aamy Alpha-amylase 52.0 65 0.0014 26.4 6.7 57 196-253 18-89 (166)
189 TIGR01681 HAD-SF-IIIC HAD-supe 51.5 1.1E+02 0.0024 23.5 8.2 25 95-124 31-55 (128)
190 TIGR02803 ExbD_1 TonB system t 51.1 98 0.0021 23.7 7.3 57 60-122 65-121 (122)
191 TIGR02512 Fe_only_hydrog hydro 50.5 7.5 0.00016 36.4 1.0 36 83-124 95-133 (374)
192 PRK03620 5-dehydro-4-deoxygluc 50.0 79 0.0017 28.5 7.6 78 195-280 86-166 (303)
193 PF01261 AP_endonuc_2: Xylose 49.6 84 0.0018 25.7 7.3 90 166-256 27-134 (213)
194 COG0422 ThiC Thiamine biosynth 49.1 2.4E+02 0.0051 26.6 10.7 49 61-123 137-185 (432)
195 PF01207 Dus: Dihydrouridine s 47.5 2.2E+02 0.0047 25.8 14.2 102 143-253 86-189 (309)
196 cd07940 DRE_TIM_IPMS 2-isoprop 47.1 2E+02 0.0044 25.3 21.3 167 60-247 15-186 (268)
197 cd00951 KDGDH 5-dehydro-4-deox 45.7 93 0.002 27.8 7.3 76 195-278 79-157 (289)
198 PF05913 DUF871: Bacterial pro 45.3 1.2E+02 0.0027 28.2 8.2 150 63-251 12-173 (357)
199 TIGR00666 PBP4 D-alanyl-D-alan 45.2 30 0.00065 32.0 4.2 29 82-110 56-84 (345)
200 PF06463 Mob_synth_C: Molybden 44.5 57 0.0012 25.5 5.1 27 249-275 60-86 (128)
201 PF13344 Hydrolase_6: Haloacid 44.3 18 0.00039 26.9 2.1 37 80-125 5-41 (101)
202 TIGR03581 EF_0839 conserved hy 44.0 2.1E+02 0.0047 24.7 12.3 177 60-266 36-221 (236)
203 TIGR03849 arch_ComA phosphosul 43.4 2.3E+02 0.0049 24.8 12.7 40 79-126 24-64 (237)
204 PRK13398 3-deoxy-7-phosphohept 43.0 1.6E+02 0.0036 26.1 8.4 62 189-251 33-95 (266)
205 COG1105 FruK Fructose-1-phosph 42.7 2.7E+02 0.0058 25.5 13.5 101 59-174 108-210 (310)
206 TIGR01465 cobM_cbiF precorrin- 42.7 70 0.0015 27.3 5.9 53 62-122 55-107 (229)
207 PF01964 ThiC: ThiC family; I 42.6 65 0.0014 30.5 5.8 71 60-144 134-220 (420)
208 TIGR03249 KdgD 5-dehydro-4-deo 42.5 1.8E+02 0.0039 26.1 8.7 17 93-109 23-39 (296)
209 COG0007 CysG Uroporphyrinogen- 42.4 62 0.0013 28.4 5.4 47 60-109 63-109 (244)
210 TIGR03249 KdgD 5-dehydro-4-deo 42.1 2.5E+02 0.0055 25.1 12.6 46 61-107 22-69 (296)
211 PRK05434 phosphoglyceromutase; 42.0 3E+02 0.0064 27.1 10.5 79 165-248 96-177 (507)
212 PF11823 DUF3343: Protein of u 41.4 40 0.00087 23.3 3.4 54 195-249 10-65 (73)
213 COG2961 ComJ Protein involved 41.3 93 0.002 27.6 6.2 44 230-274 198-247 (279)
214 PRK15473 cbiF cobalt-precorrin 40.9 81 0.0018 27.7 6.1 51 62-120 64-114 (257)
215 PRK12677 xylose isomerase; Pro 40.6 3.2E+02 0.0069 25.7 16.5 53 60-122 29-89 (384)
216 PRK14040 oxaloacetate decarbox 40.5 3.9E+02 0.0085 26.8 19.1 167 60-259 22-212 (593)
217 PRK09282 pyruvate carboxylase 40.3 4E+02 0.0086 26.7 20.3 169 60-259 21-211 (592)
218 PLN02645 phosphoglycolate phos 39.9 40 0.00086 30.6 4.1 56 61-125 15-71 (311)
219 PF07002 Copine: Copine; Inte 39.3 1.7E+02 0.0036 23.5 7.1 54 62-125 64-120 (146)
220 COG1103 Archaea-specific pyrid 38.9 3E+02 0.0065 24.9 13.6 141 48-212 47-188 (382)
221 PRK12595 bifunctional 3-deoxy- 38.3 1.4E+02 0.003 27.9 7.4 63 188-251 123-186 (360)
222 PF03102 NeuB: NeuB family; I 38.0 2.7E+02 0.0058 24.4 8.7 66 175-250 109-175 (241)
223 cd01965 Nitrogenase_MoFe_beta_ 37.9 1.9E+02 0.0042 27.4 8.6 31 187-217 159-189 (428)
224 cd01966 Nitrogenase_NifN_1 Nit 37.5 2.8E+02 0.0061 26.3 9.5 31 187-217 161-191 (417)
225 PLN02444 HMP-P synthase 36.7 3.4E+02 0.0073 27.0 9.7 27 61-89 296-322 (642)
226 PRK07168 bifunctional uroporph 35.7 1.3E+02 0.0028 29.2 7.0 45 62-109 64-108 (474)
227 TIGR00674 dapA dihydrodipicoli 35.7 1.8E+02 0.0039 25.8 7.6 76 195-278 78-158 (285)
228 PF15269 zf-C2H2_7: Zinc-finge 35.7 25 0.00054 22.2 1.4 6 43-48 25-30 (54)
229 COG0648 Nfo Endonuclease IV [D 35.6 2.9E+02 0.0063 24.8 8.7 107 162-271 118-227 (280)
230 PF09345 DUF1987: Domain of un 34.9 1.9E+02 0.0042 21.5 6.4 53 164-216 27-82 (99)
231 PRK13397 3-deoxy-7-phosphohept 34.4 2.1E+02 0.0045 25.3 7.4 61 190-251 22-83 (250)
232 PRK09284 thiamine biosynthesis 33.7 3.6E+02 0.0079 26.7 9.4 27 61-89 291-317 (607)
233 PF14871 GHL6: Hypothetical gl 33.6 1.3E+02 0.0028 23.6 5.6 56 200-256 3-66 (132)
234 PF06180 CbiK: Cobalt chelatas 33.3 2.7E+02 0.0058 24.7 8.1 73 170-252 161-238 (262)
235 PF06962 rRNA_methylase: Putat 33.2 1.4E+02 0.0031 23.8 5.8 56 164-219 68-124 (140)
236 COG2876 AroA 3-deoxy-D-arabino 33.0 2.1E+02 0.0046 25.6 7.1 59 192-251 54-113 (286)
237 PRK07328 histidinol-phosphatas 32.8 3.4E+02 0.0074 23.8 16.6 148 62-215 18-195 (269)
238 cd03028 GRX_PICOT_like Glutare 32.1 1.4E+02 0.0031 21.3 5.3 67 32-101 8-83 (90)
239 TIGR01307 pgm_bpd_ind 2,3-bisp 31.9 4.4E+02 0.0094 25.9 9.8 78 165-247 92-172 (501)
240 PRK11267 biopolymer transport 31.8 2.6E+02 0.0055 22.1 7.1 56 60-121 79-134 (141)
241 PF00682 HMGL-like: HMGL-like 30.9 3.4E+02 0.0073 23.1 16.9 175 61-259 10-195 (237)
242 PRK09389 (R)-citramalate synth 30.9 5.1E+02 0.011 25.2 21.1 179 59-258 18-199 (488)
243 TIGR00736 nifR3_rel_arch TIM-b 30.9 3.6E+02 0.0078 23.4 12.2 114 96-219 55-171 (231)
244 PF13727 CoA_binding_3: CoA-bi 30.6 71 0.0015 25.4 3.8 24 194-217 152-175 (175)
245 COG1104 NifS Cysteine sulfinat 30.0 1.2E+02 0.0026 28.6 5.4 76 97-186 103-178 (386)
246 COG3246 Uncharacterized conser 29.9 2.3E+02 0.0051 25.6 7.0 61 60-123 24-86 (298)
247 PRK08673 3-deoxy-7-phosphohept 29.5 2.2E+02 0.0048 26.3 7.1 63 188-251 98-161 (335)
248 PF07894 DUF1669: Protein of u 29.4 3.9E+02 0.0084 24.1 8.4 82 167-266 135-222 (284)
249 TIGR03586 PseI pseudaminic aci 29.3 4.5E+02 0.0098 24.1 11.5 88 176-275 131-226 (327)
250 COG0148 Eno Enolase [Carbohydr 29.2 5.1E+02 0.011 24.6 10.3 128 137-272 233-389 (423)
251 KOG2335 tRNA-dihydrouridine sy 29.0 4.8E+02 0.01 24.3 9.4 141 89-243 119-264 (358)
252 PTZ00175 diphthine synthase; P 28.8 1.5E+02 0.0032 26.4 5.7 36 81-123 78-113 (270)
253 PF00701 DHDPS: Dihydrodipicol 28.7 4.1E+02 0.009 23.5 9.3 75 195-278 81-161 (289)
254 COG4822 CbiK Cobalamin biosynt 28.5 4E+02 0.0086 23.2 9.7 88 100-209 46-134 (265)
255 PF02113 Peptidase_S13: D-Ala- 28.5 86 0.0019 30.1 4.4 42 81-122 82-123 (444)
256 COG0826 Collagenase and relate 28.2 3E+02 0.0066 25.5 7.8 85 119-212 10-94 (347)
257 PRK11113 D-alanyl-D-alanine ca 28.0 74 0.0016 30.9 3.9 41 82-122 100-140 (477)
258 COG1453 Predicted oxidoreducta 27.9 5.2E+02 0.011 24.3 10.6 125 63-207 91-226 (391)
259 TIGR02932 vnfK_nitrog V-contai 27.7 5E+02 0.011 25.0 9.6 30 187-217 170-199 (457)
260 PRK11161 fumarate/nitrate redu 27.3 1.2E+02 0.0025 25.8 4.8 52 41-94 3-57 (235)
261 PRK13209 L-xylulose 5-phosphat 27.2 4.2E+02 0.0091 23.1 12.0 71 72-148 105-190 (283)
262 PRK11024 colicin uptake protei 27.2 3.1E+02 0.0067 21.5 7.2 55 62-122 85-139 (141)
263 TIGR00522 dph5 diphthine synth 26.9 1.5E+02 0.0032 26.1 5.4 35 81-122 77-111 (257)
264 PRK12331 oxaloacetate decarbox 26.6 5.9E+02 0.013 24.5 19.9 168 60-259 21-211 (448)
265 TIGR01748 rhaA L-rhamnose isom 26.6 4E+02 0.0087 25.3 8.2 118 58-194 62-188 (414)
266 PF02679 ComA: (2R)-phospho-3- 26.4 2.5E+02 0.0054 24.7 6.5 56 62-127 22-78 (244)
267 PRK03170 dihydrodipicolinate s 26.1 3.6E+02 0.0077 23.9 7.9 17 93-109 19-35 (292)
268 cd03413 CbiK_C Anaerobic cobal 26.1 2.8E+02 0.006 20.6 6.3 54 196-253 41-98 (103)
269 COG2108 Uncharacterized conser 25.9 4.2E+02 0.0091 24.5 8.0 39 164-203 93-131 (353)
270 PRK05990 precorrin-2 C(20)-met 25.8 1.3E+02 0.0028 26.1 4.8 38 67-107 87-124 (241)
271 TIGR00365 monothiol glutaredox 25.7 2.2E+02 0.0048 20.7 5.4 21 32-53 12-32 (97)
272 PF08576 DUF1764: Eukaryotic p 25.6 38 0.00083 25.3 1.2 12 41-52 91-102 (102)
273 PF06265 DUF1027: Protein of u 25.4 26 0.00056 25.5 0.2 9 42-50 74-82 (86)
274 PF14701 hDGE_amylase: glucano 25.0 5.5E+02 0.012 24.6 9.0 93 182-281 8-123 (423)
275 PRK04147 N-acetylneuraminate l 24.9 4.9E+02 0.011 23.1 12.8 136 56-204 15-156 (293)
276 KOG4549 Magnesium-dependent ph 24.8 85 0.0018 24.8 3.0 33 89-127 41-73 (144)
277 PF00590 TP_methylase: Tetrapy 24.6 1.3E+02 0.0028 24.9 4.5 51 64-122 60-114 (210)
278 KOG2965 Arginase [Amino acid t 24.5 3.8E+02 0.0081 24.1 7.2 70 138-208 235-306 (318)
279 PRK15452 putative protease; Pr 24.4 5.9E+02 0.013 24.5 9.3 82 121-211 9-90 (443)
280 COG0816 Predicted endonuclease 24.4 3E+02 0.0065 22.0 6.2 30 231-260 72-101 (141)
281 PRK13396 3-deoxy-7-phosphohept 24.2 4.8E+02 0.01 24.3 8.3 61 190-251 108-169 (352)
282 PF14871 GHL6: Hypothetical gl 24.1 2.9E+02 0.0064 21.6 6.1 41 64-109 2-57 (132)
283 TIGR01467 cobI_cbiL precorrin- 23.8 1.9E+02 0.0041 24.7 5.4 49 66-122 78-126 (230)
284 PLN02625 uroporphyrin-III C-me 23.3 2.4E+02 0.0053 24.7 6.1 52 63-122 77-128 (263)
285 PRK08091 ribulose-phosphate 3- 23.0 5E+02 0.011 22.5 15.2 70 174-250 111-180 (228)
286 cd03029 GRX_hybridPRX5 Glutare 22.9 91 0.002 21.0 2.7 18 84-102 54-71 (72)
287 PF04914 DltD_C: DltD C-termin 22.8 95 0.0021 24.4 3.0 53 195-250 34-92 (130)
288 PF14097 SpoVAE: Stage V sporu 22.3 2.7E+02 0.0058 23.1 5.5 46 74-125 19-65 (180)
289 PF00128 Alpha-amylase: Alpha 22.3 1.1E+02 0.0024 26.6 3.8 54 199-253 6-71 (316)
290 cd07941 DRE_TIM_LeuA3 Desulfob 22.0 5.5E+02 0.012 22.6 21.9 182 59-258 14-208 (273)
291 TIGR01108 oadA oxaloacetate de 21.9 8.1E+02 0.018 24.5 19.9 167 60-258 16-205 (582)
292 TIGR01662 HAD-SF-IIIA HAD-supe 21.9 1.1E+02 0.0024 23.2 3.3 29 90-124 23-51 (132)
293 TIGR01469 cobA_cysG_Cterm urop 21.6 2.4E+02 0.0052 24.0 5.6 52 63-122 62-113 (236)
294 PRK14476 nitrogenase molybdenu 21.1 7.4E+02 0.016 23.8 10.4 30 188-217 173-202 (455)
295 PF12646 DUF3783: Domain of un 21.0 2.5E+02 0.0055 18.4 4.4 37 82-123 3-39 (58)
296 PRK10444 UMP phosphatase; Prov 20.9 1.1E+02 0.0023 26.8 3.3 38 79-125 7-44 (248)
297 cd00408 DHDPS-like Dihydrodipi 20.9 5.7E+02 0.012 22.4 8.6 77 195-279 77-158 (281)
298 PRK10785 maltodextrin glucosid 20.7 2.7E+02 0.0059 27.8 6.5 58 195-253 177-245 (598)
299 PF09153 DUF1938: Domain of un 20.6 42 0.0009 24.2 0.5 30 79-109 23-52 (86)
300 PRK05576 cobalt-precorrin-2 C( 20.6 2.6E+02 0.0056 23.9 5.6 49 66-122 78-126 (229)
301 cd03409 Chelatase_Class_II Cla 20.4 3.3E+02 0.0071 19.4 5.8 25 197-221 45-70 (101)
302 COG1647 Esterase/lipase [Gener 20.1 2.7E+02 0.0058 24.4 5.3 93 186-281 18-117 (243)
303 PF03162 Y_phosphatase2: Tyros 20.0 4.3E+02 0.0092 21.5 6.5 84 169-262 23-106 (164)
No 1
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1e-45 Score=335.22 Aligned_cols=254 Identities=43% Similarity=0.770 Sum_probs=234.3
Q ss_pred cCCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc----
Q 022752 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 77 (292)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~---- 77 (292)
.+.||..+|+|+||++. |.++++|++.||+++|.||..+..+..+++++.|+++++..+.+.
T Consensus 89 ~l~DG~~IEtVli~~~~--------------r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~ 154 (371)
T PRK14461 89 RLPDGAVVETVLMIYPD--------------RATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAM 154 (371)
T ss_pred EcCCCCEEEEEEEecCC--------------CceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhc
Confidence 36799999999999864 389999999999999999999999999999999999999765321
Q ss_pred ------------CCcceEEEecCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEe
Q 022752 78 ------------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 144 (292)
Q Consensus 78 ------------~~~~~I~fsG~GEPll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSl 144 (292)
..+.+|+|.|+||||+||+.+.+.++.+.+. |++++..+++|+|.|..+.+.+++++...+.++|||
T Consensus 155 ~~~~~~~~~~~~~~i~NIVfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSL 234 (371)
T PRK14461 155 GAAISKRHAGPVGRVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISL 234 (371)
T ss_pred ccccccccccccCceeeEEEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEe
Confidence 2378999999999999999999999999876 888989999999999999999999877678999999
Q ss_pred cCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhC------CcEEEEEec
Q 022752 145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF------QVVVNLIPF 218 (292)
Q Consensus 145 d~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~------~~~v~l~p~ 218 (292)
+|++++.|.+++|.++.+++++++++++.|.++.+.++++++++++|+||+.++..+|+++++.+ .+.|+++||
T Consensus 235 HA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~ 314 (371)
T PRK14461 235 HAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPW 314 (371)
T ss_pred CCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999998 678999999
Q ss_pred CCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEEeecccccccccccccccccC
Q 022752 219 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 271 (292)
Q Consensus 219 ~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~~ 271 (292)
||+ +...|..|+.+++..|+++|+ +.|+.+++|..+|.||.++|||+..+|
T Consensus 315 Np~-~~~~~~~ps~~~i~~F~~~L~-~~gi~vtiR~s~G~DI~AACGQL~~~~ 365 (371)
T PRK14461 315 NPV-PGTPLGRSERERVTTFQRILT-DYGIPCTVRVERGVEIAAACGQLAGRH 365 (371)
T ss_pred CCC-CCCCCCCCCHHHHHHHHHHHH-HCCceEEEeCCCCcChhhcCcccccCC
Confidence 998 466899999999999999999 899999999999999999999997644
No 2
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.2e-44 Score=330.39 Aligned_cols=265 Identities=38% Similarity=0.648 Sum_probs=237.0
Q ss_pred CCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc-----
Q 022752 3 CQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----- 77 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~----- 77 (292)
..||..+|+|+||++...+..||.. +.+.|.++++|++.||+++|.||+++..+..++++++|+++++.....+
T Consensus 80 l~Dg~~iEtV~i~~~~~~~~~~~~~-~~~~r~t~CvSsQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~~~ 158 (356)
T PRK14462 80 LRDGHTVEAVLLKMKDEKIDEEGKI-LEHAKYTVCVSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNIPY 158 (356)
T ss_pred cCCCCEEEEEEeecccccccccccc-ccCCCceEeeeccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhccc
Confidence 5799999999999987766666643 5667899999999999999999999887778899999999999865432
Q ss_pred CCcceEEEecCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhc
Q 022752 78 SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 156 (292)
Q Consensus 78 ~~~~~I~fsG~GEPll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~ 156 (292)
..+.+|+|+|+||||+|++++.++++.+++. |++++..+++|+|+|+.+.+.++++....+.+.+||++++++.|++++
T Consensus 159 ~~~~~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~ 238 (356)
T PRK14462 159 EKRVNIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRSELM 238 (356)
T ss_pred cccCCeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHHHhC
Confidence 1357999998899999999999999999995 988888899999999888777877654346788999999999999999
Q ss_pred CcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHHH
Q 022752 157 PAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236 (292)
Q Consensus 157 ~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l~ 236 (292)
|.+..++++.++++++.++.+.+.++++++++++|+||+.+++++++++++.+++.|+++||||. +...|+.|+.++++
T Consensus 239 pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~-~~~~~~~ps~e~i~ 317 (356)
T PRK14462 239 PINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPH-EGSKFERPSLEDMI 317 (356)
T ss_pred CCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCC-CCCCCCCCCHHHHH
Confidence 99888999999999988888889999999999999999999999999999999888999999997 46689999999999
Q ss_pred HHHHHHHhcCCeEEEeeccccccccccccccccc
Q 022752 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270 (292)
Q Consensus 237 ~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~ 270 (292)
.|+++++ .+|+.+++|..+|.||.++|||+..+
T Consensus 318 ~f~~~l~-~~gi~vtvR~~~G~dI~aACGQL~~~ 350 (356)
T PRK14462 318 KFQDYLN-SKGLLCTIRESKGLDISAACGQLREK 350 (356)
T ss_pred HHHHHHH-HCCCcEEEeCCCCCchhhcCccchhh
Confidence 9999999 79999999999999999999999653
No 3
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.3e-44 Score=330.19 Aligned_cols=252 Identities=44% Similarity=0.748 Sum_probs=226.5
Q ss_pred CCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc---CC
Q 022752 3 CQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---SN 79 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~---~~ 79 (292)
..||..+|+|+||++. |.++++|++.||+++|.||+++..+..+.++.+|+++++.....+ .+
T Consensus 82 ~~dg~~vE~V~i~~~~--------------~~t~cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~ 147 (348)
T PRK14467 82 TKDGHTIETVLIKERD--------------HLTLCVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENR 147 (348)
T ss_pred cCCCCEEEEEEEEeCC--------------CcEEEEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCC
Confidence 5799999999999854 389999999999999999999987777899999999999875442 24
Q ss_pred cceEEEecCCccccCHHHHHHHHHHHhC-CCCCCCCCeEEEEcCCchhhHHHHhhhC--CCceEEEEecCCChHHHhhhc
Q 022752 80 IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDL--PGLNLAVSLHAPVQDVRCQIM 156 (292)
Q Consensus 80 ~~~I~fsG~GEPll~~~~i~ell~~~~~-~g~~~~~~~i~l~TNG~~~~~~~l~~~~--~~~~l~iSld~~~~~~~~~i~ 156 (292)
+.+|+|+|+||||+|++++.++++.+++ .|++++..+++|+|+|+.+.+.+++.+. +.+++++||++++++.|++++
T Consensus 148 v~~VvfmGmGEPL~N~d~v~~~l~~l~~~~gl~~~~r~itvsT~G~~~~i~~l~~~~~l~~v~LalSLha~~~e~r~~i~ 227 (348)
T PRK14467 148 IRNVVFMGMGEPLANYENVRKAVQIMTSPWGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNLAVSLNASSQKLRERIM 227 (348)
T ss_pred CCeEEEEccChhhcCHHHHHHHHHHHcChhccCcCCCcEEEECCCChhHHHHHHhhccccCeeEEEECCCCCHHHHHHhc
Confidence 7899999999999999999999999987 5887888899999999887766666543 467889999999999999999
Q ss_pred CcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCC--cEEEEEecCCCCCCCCcCCCcHHH
Q 022752 157 PAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDK 234 (292)
Q Consensus 157 ~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~--~~v~l~p~~p~~~~~~~~~~~~e~ 234 (292)
|.+..++++.++++++.+..+.+.+++++++++||+||+.+++++++++++.++ ..|+++||||. +...|++|+.++
T Consensus 228 p~~~~~~l~~l~~~~~~~~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~-~~~~~~~ps~e~ 306 (348)
T PRK14467 228 PISKTNTLEELMEVLKQYPLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPD-PELPYERPELER 306 (348)
T ss_pred CCccccCHHHHHHHHHHHHHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCC-CCCCCCCCCHHH
Confidence 998889999999999888888899999999999999999999999999999874 45999999997 467899999999
Q ss_pred HHHHHHHHHhcCCeEEEeeccccccccccccccccc
Q 022752 235 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270 (292)
Q Consensus 235 l~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~ 270 (292)
+++|+++++ ++|+.+.+|...|.||.++|||+..+
T Consensus 307 i~~f~~~L~-~~gi~v~vR~~~G~di~aaCGqL~~~ 341 (348)
T PRK14467 307 VYKFQKILW-DNGISTFVRWSKGVDIFGACGQLRKK 341 (348)
T ss_pred HHHHHHHHH-HCCCcEEEeCCCCcchhhcccchhHh
Confidence 999999999 79999999999999999999999654
No 4
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.5e-44 Score=330.88 Aligned_cols=251 Identities=44% Similarity=0.721 Sum_probs=227.8
Q ss_pred CCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc-----
Q 022752 3 CQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----- 77 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~----- 77 (292)
..||..+|+|+||+.. |.++++|++.||+++|.||+++..+..+.++++|+++++.....+
T Consensus 104 l~Dg~~iEtV~i~~~~--------------~~tlCvSsQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~ 169 (373)
T PRK14459 104 LHDGTLVESVLMRYPD--------------RATLCISSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGE 169 (373)
T ss_pred cCCCCEEEEEEEEEcC--------------CceEEEEecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcc
Confidence 5799999999999864 389999999999999999999987778999999999999865421
Q ss_pred -----CCcceEEEecCCccccCHHHHHHHHHHHhC---CCCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCCh
Q 022752 78 -----SNIRNVVFMGMGEPLNNYAALVEAVRIMTG---LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 149 (292)
Q Consensus 78 -----~~~~~I~fsG~GEPll~~~~i~ell~~~~~---~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~ 149 (292)
..+.+|+|+|+||||+|++++.++++.+++ .|++++..+++++|+|+.+.+.+++++...+.+.||||++++
T Consensus 170 ~~~~~~~i~nVvfmGmGEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~~~i~~la~~~l~~~LavSLha~d~ 249 (373)
T PRK14459 170 VPGGPGRLSNVVFMGMGEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVGLVPAIRKLADEGLPVTLAVSLHAPDD 249 (373)
T ss_pred cccCCCceeEEEEecCCcchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcCchhHHHHHHHhcCCeEEEEEeCCCCH
Confidence 126789999999999999999999999987 367787889999999998888888887656779999999999
Q ss_pred HHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhC---CcEEEEEecCCCCCCCC
Q 022752 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQ 226 (292)
Q Consensus 150 ~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~---~~~v~l~p~~p~~~~~~ 226 (292)
+.|++++|.++.+++++++++++.+.++.+.++++++++++|+||+.+++++++++++.+ .+.|+++||||.+ ...
T Consensus 250 e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~-~~~ 328 (373)
T PRK14459 250 ELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTP-GSK 328 (373)
T ss_pred HHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCC-CCC
Confidence 999999999888999999999989988889999999999999999999999999999998 5679999999984 557
Q ss_pred cCCCcHHHHHHHHHHHHhcCCeEEEeecccccccccccccccc
Q 022752 227 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269 (292)
Q Consensus 227 ~~~~~~e~l~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~ 269 (292)
|..|+.+.+..|+++|+ +.|+.+++|..+|.||.++|||+..
T Consensus 329 y~~~~~~~~~~F~~~L~-~~gi~~tiR~~~G~dI~aACGQL~~ 370 (373)
T PRK14459 329 WTASPPEVEREFVRRLR-AAGVPCTVRDTRGQEIDGACGQLAA 370 (373)
T ss_pred CcCCCHHHHHHHHHHHH-HCCCeEEeeCCCCcCHhhcCCcccc
Confidence 89999999999999999 7999999999999999999999864
No 5
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.4e-44 Score=325.00 Aligned_cols=251 Identities=41% Similarity=0.713 Sum_probs=228.0
Q ss_pred CCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhccCCcce
Q 022752 3 CQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRN 82 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~ 82 (292)
+.||..+|+|+||+. .|.++++|++.|||++|.||+.+..+..+.++++|+++++.......++.+
T Consensus 86 l~dg~~iEsVlip~~--------------~r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~~~i~n 151 (345)
T PRK14466 86 VGEGHFVESVYIPEE--------------DRATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPERDKLTN 151 (345)
T ss_pred cCCCCEEEEEEEecC--------------CceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCe
Confidence 579999999999864 359999999999999999999988777788999999999987643335899
Q ss_pred EEEecCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccC
Q 022752 83 VVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 161 (292)
Q Consensus 83 I~fsG~GEPll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~ 161 (292)
|+|+|+||||+|++.+.+.++.+++. |++++..+++|+|||..+.+.++++.. .+.+++|||+++++.|++++|.++.
T Consensus 152 IvfmGmGEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~~~i~~l~~~~-~~~LavSLha~~~e~R~~i~P~~~~ 230 (345)
T PRK14466 152 LVFMGMGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLEES-ECHLAISLHSPFPEQRRELMPAEKA 230 (345)
T ss_pred EEEeeeCcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCchHHHHHhhcc-CcEEEEEcCCCCHHHHHHhcCCccC
Confidence 99999999999999999999999876 877888999999999887777777654 4788899999999999999999888
Q ss_pred ccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHHHHHHHH
Q 022752 162 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241 (292)
Q Consensus 162 ~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~ 241 (292)
+++++++++++.|.+..+.++++++++++|+||+.+++.+|+++++.+++.|+++||+|.+ ...|.+|+.++++.|++.
T Consensus 231 ~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np~~-~~~~~~~s~~~~~~F~~~ 309 (345)
T PRK14466 231 FSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHAIP-GVDLEGSDMARMEAFRDY 309 (345)
T ss_pred CCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCC-CCCCcCCCHHHHHHHHHH
Confidence 9999999999999989999999999999999999999999999999998889999999984 458999999999999999
Q ss_pred HHhcCCeEEEeeccccccccccccccccc
Q 022752 242 LRGSYNIRTTVRKQMGQDISGACGQLVVN 270 (292)
Q Consensus 242 l~~~~g~~v~ir~~~g~~~~~~c~~~~~~ 270 (292)
|+ .+|+.+++|...|.||.++|||+..+
T Consensus 310 L~-~~gi~~tvR~s~G~dI~aACGQL~~~ 337 (345)
T PRK14466 310 LT-SHGVFTTIRASRGEDIFAACGMLSTA 337 (345)
T ss_pred HH-HCCCcEEEeCCCCCchhhcCccchhh
Confidence 99 79999999999999999999999654
No 6
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.1e-44 Score=325.93 Aligned_cols=253 Identities=38% Similarity=0.684 Sum_probs=230.1
Q ss_pred cCCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc--CC
Q 022752 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SN 79 (292)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~--~~ 79 (292)
...||..+|+|+||+.. | .|.++++|++.|||++|.||+.+..+..++++..|+++++...... ..
T Consensus 85 ~l~Dg~~iEtV~i~~~~------~------~~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~ 152 (342)
T PRK14465 85 YSGEGKEFEAVWIPSGD------G------GRKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDR 152 (342)
T ss_pred EcCCCCEEEEEEeEecC------C------CceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCC
Confidence 35799999999999752 2 5799999999999999999999988888899999999999875432 35
Q ss_pred cceEEEecCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCc
Q 022752 80 IRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 158 (292)
Q Consensus 80 ~~~I~fsG~GEPll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~ 158 (292)
+.+|+|.|+||||+|++.+.+.++++++. +++++..+++|+|||+.+.+.++++....+.+.||||+++++.|.+++|.
T Consensus 153 ~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi 232 (342)
T PRK14465 153 ATNVVFMGMGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDI 232 (342)
T ss_pred ceEEEEEcCCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEeec
Confidence 78999999999999999999999999985 77788889999999999888888865445889999999999999999998
Q ss_pred ccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHHHHH
Q 022752 159 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 238 (292)
Q Consensus 159 ~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l~~~ 238 (292)
+..++++.++++++.|.++.+.++++++++++|+||+.+++++++++++.+++.++++||+|. ..++++|+.++++.|
T Consensus 233 ~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~--~~~~~~ps~e~i~~F 310 (342)
T PRK14465 233 EEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE--FFGWRRPTDDEVAEF 310 (342)
T ss_pred cccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC--CCCCCCCCHHHHHHH
Confidence 888999999999988988889999999999999999999999999999999888999999996 468999999999999
Q ss_pred HHHHHhcCCeEEEeecccccccccccccccc
Q 022752 239 QKILRGSYNIRTTVRKQMGQDISGACGQLVV 269 (292)
Q Consensus 239 ~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~ 269 (292)
+++|+ .+|+.+++|..+|.||.++|||+..
T Consensus 311 ~~~L~-~~Gi~v~~R~~~G~di~aACGqL~~ 340 (342)
T PRK14465 311 IMLLE-PAGVPILNRRSPGKDIFGACGMLAS 340 (342)
T ss_pred HHHHH-HCCCeEEEeCCCCcChhhcCCcccc
Confidence 99999 8999999999999999999999965
No 7
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=100.00 E-value=8.6e-44 Score=326.70 Aligned_cols=257 Identities=39% Similarity=0.738 Sum_probs=227.9
Q ss_pred cCCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc----
Q 022752 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 77 (292)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~---- 77 (292)
...||..+|+|+||+.. |.++++|++.|||++|.||+.+..+..+.++++|+++++.....+
T Consensus 87 ~~~dg~~iE~V~i~~~~--------------~~t~cVSsQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~ 152 (355)
T TIGR00048 87 KLGDGQTIETVLIPEKD--------------RATVCVSSQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNET 152 (355)
T ss_pred EcCCCCEEEEEEEEeCC--------------CcEEEEecCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Confidence 35799999999999754 389999999999999999999877667889999999998764321
Q ss_pred -CCcceEEEecCCccccCHHHHHHHHHHHhC-CCCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhh
Q 022752 78 -SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 155 (292)
Q Consensus 78 -~~~~~I~fsG~GEPll~~~~i~ell~~~~~-~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i 155 (292)
.++..|+|+|+||||+|++++.++++.+++ .|+++...+++++|||+.+.+.++++....+.+.+|||+.+++.|+++
T Consensus 153 ~~~v~nVvfmGmGEPLln~d~v~~~l~~l~~~~g~~i~~~~itisT~G~~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l 232 (355)
T TIGR00048 153 GERVSNVVFMGMGEPLLNLNEVVKAMEIMNDDFGLGISKRRITISTSGVVPKIDILADKMLQVALAISLHAPNDELRSSL 232 (355)
T ss_pred CCCeeEEEEecCCchhhCHHHHHHHHHHhhcccccCcCCCeEEEECCCchHHHHHHHHhCCCcEEEEEeCCCCHHHHHHh
Confidence 246789999999999999999999999986 477777789999999998878888876545678899999999999999
Q ss_pred cCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHH
Q 022752 156 MPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235 (292)
Q Consensus 156 ~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l 235 (292)
+|.++.++++.+++++++++++.+.++++++++++|+||+.+++.+++++++.+++.|+++||+|.+ ...|.+|+.+++
T Consensus 233 ~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~~-~~~~~~ps~e~i 311 (355)
T TIGR00048 233 MPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPFP-EADYERPSNEQI 311 (355)
T ss_pred cCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccCC-CCCCCCCCHHHH
Confidence 9988888999999999888888999999999999999999999999999999998889999999984 567888999999
Q ss_pred HHHHHHHHhcCCeEEEeecccccccccccccccccCcCc
Q 022752 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274 (292)
Q Consensus 236 ~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~~~~~ 274 (292)
..|++++. ++|+.+++|..+|.||.++|||+..+.--+
T Consensus 312 ~~f~~~L~-~~gi~v~iR~~~G~di~aaCGqL~~~~~~~ 349 (355)
T TIGR00048 312 DRFAKTLM-SYGFTVTIRKSRGDDIDAACGQLRAKDVID 349 (355)
T ss_pred HHHHHHHH-HCCCeEEEeCCCCcchhhcCCcchhhhccc
Confidence 99999999 799999999999999999999997654433
No 8
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1e-43 Score=323.07 Aligned_cols=252 Identities=34% Similarity=0.571 Sum_probs=224.7
Q ss_pred CCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc--CCc
Q 022752 3 CQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SNI 80 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~--~~~ 80 (292)
..||..+|+|++|+.. .|+++++|++.|||++|.||+.+..+..+.+++.|+++++...... ..+
T Consensus 79 l~dg~~iE~V~ip~~~-------------~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~~~i 145 (336)
T PRK14470 79 LPDGLRVEAVRIPLFD-------------THHVVCLSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSERPI 145 (336)
T ss_pred cCCCCEEEEEeccccC-------------CCCEEEEeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 5799999999999643 3489999999999999999999987777889999999998875332 257
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcc
Q 022752 81 RNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 159 (292)
Q Consensus 81 ~~I~fsG~GEPll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~ 159 (292)
+.|+|+|+||||+|++.+.++++.+++. |++++..+++|+|||+.+.+.++++....+.+.+|||+++++.|.+++|.+
T Consensus 146 ~nIvfmGmGEPllN~d~v~~~i~~l~~~~~~~~~~~~ItVsTnG~~p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~ 225 (336)
T PRK14470 146 TGVVFMGQGEPFLNYDEVLRAAYALCDPAGARIDGRRISISTAGVVPMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIE 225 (336)
T ss_pred CEEEEEecCccccCHHHHHHHHHHHhCccccccCCCceEEEecCChHHHHHHHhcCCCceEEEecCCCCHHHHHHhcCcc
Confidence 8999999999999999999999999875 666767899999999998888888766457899999999999999999998
Q ss_pred cCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHHHHHH
Q 022752 160 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 239 (292)
Q Consensus 160 ~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~ 239 (292)
++++++.++++++.+.+. +.++++++++++|+||+++++++++++++.+.+.++++||+|.. ..|.+|+.+++..|+
T Consensus 226 ~~~~le~il~ai~~~~~~-~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~--~~~~~p~~~~i~~f~ 302 (336)
T PRK14470 226 QGFPLDELVEAIREHAAL-RGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDAT--GRYRPPDEDEWNAFR 302 (336)
T ss_pred ccCCHHHHHHHHHHHHHh-CCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCC--CCccCCCHHHHHHHH
Confidence 889999999999887766 88999999999999999999999999999988899999999963 389999999999999
Q ss_pred HHHH-hcCCeEEEeeccccccccccccccccc
Q 022752 240 KILR-GSYNIRTTVRKQMGQDISGACGQLVVN 270 (292)
Q Consensus 240 ~~l~-~~~g~~v~ir~~~g~~~~~~c~~~~~~ 270 (292)
+.|. ++.|+.+++|..+|.||.++|||+..+
T Consensus 303 ~~l~~~~~g~~~~~R~~~G~di~aaCGqL~~~ 334 (336)
T PRK14470 303 DALARELPGTPVVRRYSGGQDEHAACGMLASR 334 (336)
T ss_pred HHHHHccCCeEEEEECCCCCChHhccCccccc
Confidence 9994 378999999999999999999999664
No 9
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.2e-43 Score=322.07 Aligned_cols=252 Identities=40% Similarity=0.713 Sum_probs=225.3
Q ss_pred cCCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc--CC
Q 022752 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SN 79 (292)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~--~~ 79 (292)
...||..+|+|++|+. .|.++++|++.|||++|.||+.+..+..+.++++|+++++.....+ ..
T Consensus 83 ~l~dg~~iE~v~~~~~--------------~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~~ 148 (345)
T PRK14457 83 STEDGEIIETVGIPTE--------------KRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQRR 148 (345)
T ss_pred EcCCCCEEEEEEEEcC--------------CCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcCC
Confidence 3579999999999863 4589999999999999999999877777789999999999876543 25
Q ss_pred cceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhC------CCceEEEEecCCChHHHh
Q 022752 80 IRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL------PGLNLAVSLHAPVQDVRC 153 (292)
Q Consensus 80 ~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~------~~~~l~iSld~~~~~~~~ 153 (292)
+.+|+|+|+||||+|++.+.++++.+++. ++++..+++++|+|..+.+.++++.. ..+.+.+|||+++++.|+
T Consensus 149 ~~~IvfmGmGEPlln~~~v~~~i~~l~~~-~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~ 227 (345)
T PRK14457 149 VSHVVFMGMGEPLLNIDEVLAAIRCLNQD-LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRE 227 (345)
T ss_pred CCEEEEEecCccccCHHHHHHHHHHHhcc-cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHH
Confidence 78999999999999999999999999875 44666799999999887777877654 245688999999999999
Q ss_pred hhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHH
Q 022752 154 QIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDD 233 (292)
Q Consensus 154 ~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e 233 (292)
+++|.+..++++++++++++++.+.+.+++++++++||+||+.+++++++++++.+++.|+++||||.+ ...|.+|+.+
T Consensus 228 ~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~-~~~~~~ps~e 306 (345)
T PRK14457 228 TLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPID-EVEFQRPSPK 306 (345)
T ss_pred HhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCC-CCCCCCCCHH
Confidence 999988889999999999999989999999999999999999999999999999998889999999984 5688999999
Q ss_pred HHHHHHHHHHhcCCeEEEeeccccccccccccccccc
Q 022752 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270 (292)
Q Consensus 234 ~l~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~ 270 (292)
+++.|+++++ .+|+.+++|...|.||.++|||+..+
T Consensus 307 ~i~~f~~~L~-~~Gi~vtvR~~~G~di~aaCGqL~~~ 342 (345)
T PRK14457 307 RIQAFQRVLE-QRGVAVSVRASRGLDANAACGQLRRN 342 (345)
T ss_pred HHHHHHHHHH-HCCCeEEEeCCCCCchhhccccchhc
Confidence 9999999999 79999999999999999999999654
No 10
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.5e-43 Score=321.30 Aligned_cols=259 Identities=41% Similarity=0.731 Sum_probs=229.1
Q ss_pred cCCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc----
Q 022752 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 77 (292)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~---- 77 (292)
...||..+|+|++|+.. |.++++|++.|||++|.||..+..+..+.++++|+++++......
T Consensus 75 ~~~dg~~iE~V~i~~~~--------------~~t~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~ 140 (343)
T PRK14468 75 TLLDGKQTEAVYMPYLD--------------RKTICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGIS 140 (343)
T ss_pred ECCCCCEEEEEEEEecC--------------CCEEEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcC
Confidence 35799999999999753 488999999999999999999887778899999999998764322
Q ss_pred -CCcceEEEecCCccccCHHHHHHHHHHHhC-CCCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhh
Q 022752 78 -SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 155 (292)
Q Consensus 78 -~~~~~I~fsG~GEPll~~~~i~ell~~~~~-~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i 155 (292)
..+..|+|+|+||||+|++++.+.++.+.+ .+++++..+++++|||..+.+.++++....+.+.+|||+.+++.|+++
T Consensus 141 ~~~i~~Vvf~GmGEPlln~~~v~~~i~~l~~~~g~~l~~r~itvST~G~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i 220 (343)
T PRK14468 141 PREIRNVVLMGMGEPLLNYENVLKAARIMLHPQALAMSPRRVTLSTVGIPKGIRRLAEEDLGVRLALSLHAPDEETRQRI 220 (343)
T ss_pred cCCccEEEEeccCccccCHHHHHHHHHHhcccccccccCceEEEECCCChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHh
Confidence 236799999999999999999999999854 466666679999999987667788876655678999999999999999
Q ss_pred cCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHH
Q 022752 156 MPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235 (292)
Q Consensus 156 ~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l 235 (292)
+|.+..+++++++++++++.++.+.++++++++++|+||+.+++.+++++++.+.+.++++||+|.. ...+.+|+.+++
T Consensus 221 ~p~~~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~~VnLIPynp~~-~~~~~~ps~e~i 299 (343)
T PRK14468 221 IPTAHRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGLVSHVNLIPFNPWE-GSPFQSSPRAQI 299 (343)
T ss_pred ccccccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcCCcEEEEEcCCCCC-CCCCCCCCHHHH
Confidence 9887778999999999888888889999999999999999999999999999998889999999973 567899999999
Q ss_pred HHHHHHHHhcCCeEEEeecccccccccccccccccCcCccc
Q 022752 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 276 (292)
Q Consensus 236 ~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~~~~~~~ 276 (292)
+.|++++. ++|+.+++|..+|.||.++|||+..+.|.-+.
T Consensus 300 ~~f~~~L~-~~Gi~vtiR~~~g~di~aaCGqL~~~~~~~~~ 339 (343)
T PRK14468 300 LAFADVLE-RRGVPVSVRWSRGRDVGAACGQLALKRPGALT 339 (343)
T ss_pred HHHHHHHH-HCCCeEEEeCCCCcchhhcCCccccCCccccc
Confidence 99999999 79999999999999999999999998886553
No 11
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.2e-43 Score=321.19 Aligned_cols=253 Identities=39% Similarity=0.753 Sum_probs=226.6
Q ss_pred CCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhccC--Cc
Q 022752 3 CQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS--NI 80 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~~--~~ 80 (292)
..||..+|+|+||++. +.++++|++.||+++|.||+++..+..+.++++|+++++.....+. .+
T Consensus 84 ~~dg~~iE~V~i~~~~--------------~~t~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~~~ 149 (342)
T PRK14454 84 LEDGNIIESVVMKYKH--------------GNSICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGERI 149 (342)
T ss_pred cCCCCEEEEEEEEEcC--------------CCEEEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcCCC
Confidence 5799999999999764 2789999999999999999998877778999999999998765432 35
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhC-CCCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcc
Q 022752 81 RNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 159 (292)
Q Consensus 81 ~~I~fsG~GEPll~~~~i~ell~~~~~-~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~ 159 (292)
.+|+|.|+||||+|++++.++++.+++ .|++++..+++|+|+|+.+.+.++++....+++.+||++++++.|+.++|.+
T Consensus 150 ~gvV~mggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~ 229 (342)
T PRK14454 150 SNIVLMGSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVPKIYELADENLQITLAISLHAPNDELRKKMMPIA 229 (342)
T ss_pred CCEEEECCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCChhHHHHHHhhcccceEEEecCCCCHHHHHHhcCCc
Confidence 676655559999999999999999998 5887778899999999998888888765567889999999999999999998
Q ss_pred cCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHHHHHH
Q 022752 160 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 239 (292)
Q Consensus 160 ~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~ 239 (292)
..+++++++++++++..+.+.++++++++++|+||+.+++++++++++.+.+.|+++||||.+ ...|.+|+.+++..|.
T Consensus 230 ~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gvNDs~eda~~La~llk~l~~~VnLiPyn~~~-~~~~~~ps~e~l~~f~ 308 (342)
T PRK14454 230 NKYSIEELIEACKYYINKTNRRITFEYALVKGVNDSKEDAKELGKLLKGMLCHVNLIPVNEVK-ENGFKKSSKEKIKKFK 308 (342)
T ss_pred ccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEEecCCCC-CCCCCCCCHHHHHHHH
Confidence 889999999999888888999999999999999999999999999999987789999999985 5688999999999999
Q ss_pred HHHHhcCCeEEEeecccccccccccccccccC
Q 022752 240 KILRGSYNIRTTVRKQMGQDISGACGQLVVNL 271 (292)
Q Consensus 240 ~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~~ 271 (292)
++++ ++|+.+++|...|+||.++|||+..++
T Consensus 309 ~~l~-~~gi~v~iR~~~G~di~aaCGQL~~~~ 339 (342)
T PRK14454 309 NILK-KNGIETTIRREMGSDINAACGQLRRSY 339 (342)
T ss_pred HHHH-HCCCcEEEeCCCCCchhhcCcccchhh
Confidence 9999 799999999999999999999997653
No 12
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=7.3e-43 Score=320.68 Aligned_cols=255 Identities=37% Similarity=0.737 Sum_probs=227.9
Q ss_pred cCCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc----
Q 022752 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 77 (292)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~---- 77 (292)
...||...|+|+||+.. |.++++|++.|||++|.||..+.....+.++++|+++++......
T Consensus 91 ~~~dg~~ie~V~~~~~~--------------~~t~ciSsqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~ 156 (356)
T PRK14455 91 ELPDGYLIETVLMRHEY--------------GNSVCVTTQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDET 156 (356)
T ss_pred EcCCCCEEEEEEEEecC--------------CceEEEECCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhc
Confidence 35799999999999854 378999999999999999999987778899999999998864321
Q ss_pred -CCcceEEEecCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhh
Q 022752 78 -SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 155 (292)
Q Consensus 78 -~~~~~I~fsG~GEPll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i 155 (292)
.++..|+|+|+||||+|++++.++++.+++. |++++..+++|+|||+.+.+.++.+....+.+.+|+|+.+++.|+.+
T Consensus 157 g~~v~~Vv~~GmGEPLln~~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l 236 (356)
T PRK14455 157 EERVSHIVVMGIGEPFDNYDNVMDFLRIINDDKGLAIGARHITVSTSGIAPKIYDFADEGLQINLAISLHAPNNELRSSL 236 (356)
T ss_pred CCCcceEEEeccccccCCHHHHHHHHHHHhcccCcccCCCceEEEecCchHhHHHHHhcccCeeEEeccCCCCHHHHHHh
Confidence 3578999999999999999999999999974 87777779999999998877788876655778899999999999999
Q ss_pred cCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHH
Q 022752 156 MPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235 (292)
Q Consensus 156 ~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l 235 (292)
+|.++.++++.++++++.+.+..+.++++++++++|+||+.+++++++++++.++..|+++||+|.+ ...|..++.+++
T Consensus 237 ~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~-~~ky~~ps~e~l 315 (356)
T PRK14455 237 MPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVP-ERDYVRTPKEDI 315 (356)
T ss_pred cCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCC-CCCCcCCCHHHH
Confidence 9988889999999999888777888999999999999999999999999999998889999999985 457888999999
Q ss_pred HHHHHHHHhcCCeEEEeecccccccccccccccccCc
Q 022752 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 272 (292)
Q Consensus 236 ~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~~~ 272 (292)
..|++.+. ++|+.+++|...|.||.++|||+..+..
T Consensus 316 ~~f~~~L~-~~gi~v~ir~~~g~di~aaCGqL~~~~~ 351 (356)
T PRK14455 316 FAFEDTLK-KNGVNCTIRREHGTDIDAACGQLRAKER 351 (356)
T ss_pred HHHHHHHH-HCCCcEEEeCCCCcchhhcCccchhhhh
Confidence 99999999 7999999999999999999999987654
No 13
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.2e-42 Score=319.14 Aligned_cols=257 Identities=40% Similarity=0.702 Sum_probs=224.6
Q ss_pred CCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhc--cCCc
Q 022752 3 CQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR--LSNI 80 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~--~~~~ 80 (292)
..||..+|+|++|++. |.++++|++.|||++|.||+++..+..+.++++|+++++..... ...+
T Consensus 84 ~~dg~~ie~v~~~~~~--------------~~t~cissq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~~~v 149 (343)
T PRK14469 84 LEDGNTIESVMLFHPD--------------RITACISTQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEKKKV 149 (343)
T ss_pred cCCCCEEEEEEEecCC--------------CeEEEEEecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhccCCc
Confidence 5799999999999864 38899999999999999999987766788999999999876432 1357
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcc
Q 022752 81 RNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 159 (292)
Q Consensus 81 ~~I~fsG~GEPll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~ 159 (292)
.+|+|+|+||||+|++.+.++++++++. +++++..+++++|||+.+.+.++++.+..+.+.||+|+.+++.|+.++|.+
T Consensus 150 ~~Vvf~GmGEPLln~d~v~~~i~~l~~~~~~~~g~~~itisTnG~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~ 229 (343)
T PRK14469 150 GNVVYMGMGEPLLNYENVIKSIKILNHKKMKNIGIRRITISTVGIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLN 229 (343)
T ss_pred CeEEEEccChhhhhHHHHHHHHHHHhchhcccCCCCeEEEECCCChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcC
Confidence 8999999999999999999999999764 444444699999999866678888876556789999999999999999888
Q ss_pred cCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHHHHHH
Q 022752 160 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 239 (292)
Q Consensus 160 ~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~ 239 (292)
+.+++++++++++.+.+..+.++++++++++|+||+.+++++++++++.+++.|+++||+|.. ..+..|+.+++.+|.
T Consensus 230 ~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~~--~~~~~ps~e~l~~f~ 307 (343)
T PRK14469 230 KKYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPTV--PGLEKPSRERIERFK 307 (343)
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCCC--ccCCCCCHHHHHHHH
Confidence 889999999999888777788999999999999999999999999999988889999999974 378889999999999
Q ss_pred HHHHhcCCeEEEeecccccccccccccccccCcCcccCCC
Q 022752 240 KILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 279 (292)
Q Consensus 240 ~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~~~~~~~~~~ 279 (292)
+.++ .+|+.+++|...|.||.++|||+..+. .+|||
T Consensus 308 ~~l~-~~gi~vtvr~~~g~di~aaCGqL~~~~---~~~~~ 343 (343)
T PRK14469 308 EILL-KNGIEAEIRREKGSDIEAACGQLRRRN---LKSKS 343 (343)
T ss_pred HHHH-HCCCeEEEeCCCCcchhhcCccchhhh---hccCC
Confidence 9999 799999999999999999999997764 35554
No 14
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.2e-42 Score=319.43 Aligned_cols=251 Identities=39% Similarity=0.661 Sum_probs=224.1
Q ss_pred CCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhh-------
Q 022752 3 CQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS------- 75 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~------- 75 (292)
+.||..+|+|++|+.+ +.++++|++.|||++|.||..+..+..+.++.+|+++++..+.
T Consensus 104 l~dg~~iEtV~i~~~~--------------~~t~ciSsq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~~ 169 (368)
T PRK14456 104 LPDGELVETVLIPGPE--------------RMTACISSQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAERN 169 (368)
T ss_pred cCCCCEEEEEEEecCC--------------ceEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 5799999999999754 4889999999999999999998777778899999999975431
Q ss_pred ccCCcceEEEecCCccccCHHHHHHHHHHHhCC--CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHh
Q 022752 76 RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL--PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 153 (292)
Q Consensus 76 ~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~--g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~ 153 (292)
...++..|+|+|+||||+|++.+.++++++++. +++++..+++++|||+.+.+.++++++..+.+.||||+++++.|.
T Consensus 170 ~~~~v~nIvfmGmGEPLln~d~v~~~i~~l~~~~~~~~is~r~ItisT~Gl~~~i~~L~~~gl~~~LaiSL~a~~~e~r~ 249 (368)
T PRK14456 170 RERGITNIVFMGMGEPLLNTDNVFEAVLTLSTRKYRFSISQRKITISTVGITPEIDRLATSGLKTKLAVSLHSADQEKRE 249 (368)
T ss_pred ccCCccEEEEeCcCccccCHHHHHHHHHHHhccccccCcCcCeeEEECCCChHHHHHHHHcCCCceEEEEecCCCHHHHH
Confidence 113578999999999999998899999999874 455666899999999888788888887556899999999999999
Q ss_pred hhcCccc-CccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcH
Q 022752 154 QIMPAAR-AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 232 (292)
Q Consensus 154 ~i~~~~~-~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~ 232 (292)
+++|.+. .+++++++++++.++++.+..+++++++++|+||+.+++.+++++++.+.+.++++||+|.+ ...|.+|+.
T Consensus 250 ~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~-~~~~~~ps~ 328 (368)
T PRK14456 250 RLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIV-NIKFEPVCS 328 (368)
T ss_pred HhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCC-CCCCCCCCH
Confidence 9998874 78999999999888888999999999999999999999999999999988889999999985 457889999
Q ss_pred HHHHHHHHHHHhcCCeEEEeecccccccccccccccc
Q 022752 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 269 (292)
Q Consensus 233 e~l~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~ 269 (292)
++++.|++.|+ ++|+.+++|..+|.||.++|||+..
T Consensus 329 e~i~~F~~~L~-~~Gi~vtvR~~~G~di~aACGQL~~ 364 (368)
T PRK14456 329 STRERFRDRLL-DAGLQVTVRKSYGTTINAACGQLAA 364 (368)
T ss_pred HHHHHHHHHHH-HCCCcEEeeCCCCcchhhcCCcchh
Confidence 99999999999 7999999999999999999999965
No 15
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=315.61 Aligned_cols=254 Identities=42% Similarity=0.738 Sum_probs=225.6
Q ss_pred cCCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc-CCc
Q 022752 2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-SNI 80 (292)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~-~~~ 80 (292)
...||..+|+|+||+.. .|.++++|++.|||++|.||.++..+..+.++.+|+++++...... .++
T Consensus 81 ~l~dg~~iE~V~i~~~~-------------~~~t~CvssqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~~~~~i 147 (347)
T PRK14453 81 ELTDGERIEAVGLKYKQ-------------GWESFCISSQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYLNGHRL 147 (347)
T ss_pred EcCCCCEEEEEEEeecC-------------CceeEEEecCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHhcCCCc
Confidence 35799999999999754 3589999999999999999999988888999999999999865332 247
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcc
Q 022752 81 RNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 159 (292)
Q Consensus 81 ~~I~fsG~GEPll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~ 159 (292)
.+|+|+|+||||+|+ .+.++++.+++. +++++..+++|+|+|+.+.+.++.+..+.+++.+|+++.+++.|.++++.+
T Consensus 148 ~~IvfmGmGEPLln~-~v~~~i~~l~~~~~~~~~~r~itVsT~G~~~~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~ 226 (347)
T PRK14453 148 DSISFMGMGEALANP-ELFDALKILTDPNLFGLSQRRITISTIGIIPGIQRLTQEFPQVNLTFSLHSPFESQRSELMPIN 226 (347)
T ss_pred ceEEEeecCCccCCH-HHHHHHHHHhcccccCCCCCcEEEECCCCchhHHHHHhhccCcCEEEEecCCCHHHHHHhcCcc
Confidence 899999999999995 588999999875 667777899999999887777888777779999999999999999999998
Q ss_pred cCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhC-----CcEEEEEecCCCCC-CCCcCCCcHH
Q 022752 160 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-----QVVVNLIPFNPIGS-VSQFRTSSDD 233 (292)
Q Consensus 160 ~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~-----~~~v~l~p~~p~~~-~~~~~~~~~e 233 (292)
..+.++++++++++++.+.+.++++++++++|+||+.+++++++++++.+ ...|+++||||.+. ..+++.|+.+
T Consensus 227 ~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e 306 (347)
T PRK14453 227 KRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSAG 306 (347)
T ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCHH
Confidence 88999999999999988888999999999999999999999999999987 34699999999853 2258899999
Q ss_pred HHHHHHHHHHhcCCeEEEeeccccccccccccccccc
Q 022752 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270 (292)
Q Consensus 234 ~l~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~ 270 (292)
++..|+++++ +.|+.+++|..+|.||.++|||+..+
T Consensus 307 ~v~~f~~~L~-~~Gi~vtiR~~~G~di~aaCGqL~~~ 342 (347)
T PRK14453 307 QIKQFCSTLK-SAGISVTVRTQFGSDISAACGQLYGN 342 (347)
T ss_pred HHHHHHHHHH-HCCCcEEEeCCCCCchhhccccchhh
Confidence 9999999999 79999999999999999999999654
No 16
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.9e-42 Score=317.37 Aligned_cols=255 Identities=42% Similarity=0.725 Sum_probs=226.5
Q ss_pred CCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc-----
Q 022752 3 CQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----- 77 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~----- 77 (292)
..||..+|+|++|+++ .|+++++|++.|||++|.||+.+..+..+.++++|+++++.....+
T Consensus 84 ~~dg~~iE~V~~p~~~-------------~r~t~CvSsq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g 150 (354)
T PRK14460 84 LADGALVETVLIPSKS-------------RRYTQCLSCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNG 150 (354)
T ss_pred cCCCCEEEEEEeEcCC-------------CceeEEeeCCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhcc
Confidence 5799999999999876 3588999999999999999999987778899999999999643221
Q ss_pred CC---cceEEEecCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHh
Q 022752 78 SN---IRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 153 (292)
Q Consensus 78 ~~---~~~I~fsG~GEPll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~ 153 (292)
.+ ++.|+|+|+||||+|++++.++++.+++. |++++..+++|+|||+.+.+.+|.+... +.+.||||+++++.|+
T Consensus 151 ~g~~~i~nIvfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~~~~i~~L~~~~l-~~L~iSLha~~~e~r~ 229 (354)
T PRK14460 151 PDHPILRNLVFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGIEKGLRELGESGL-AFLAVSLHAPNQELRE 229 (354)
T ss_pred CCCcceeEEEEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCChHHHHHHHhCCC-cEEEEeCCCCCHHHHH
Confidence 11 68999999999999999999999999875 8777778999999998666677776653 6788999999999999
Q ss_pred hhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHH
Q 022752 154 QIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDD 233 (292)
Q Consensus 154 ~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e 233 (292)
++++.+..+++++++++++.+....+.++++++++++|+||+.+++++++++++.++..|+++||||. ....|.+|+.+
T Consensus 230 ~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~VnLIpyn~~-~g~~y~~p~~e 308 (354)
T PRK14460 230 RIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTKCKLNLIVYNPA-EGLPYSAPTEE 308 (354)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCC-CCCCCCCCCHH
Confidence 99998878899999999988888888899999999999999999999999999999888999999997 45678899999
Q ss_pred HHHHHHHHHHhcCCeEEEeecccccccccccccccccCcC
Q 022752 234 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 273 (292)
Q Consensus 234 ~l~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~~~~ 273 (292)
+++.|+++++ ..|+.+++|..+|.||.++|||+..+.-+
T Consensus 309 ~v~~f~~~l~-~~Gi~vtir~~~G~di~aaCGqL~~~~~~ 347 (354)
T PRK14460 309 RILAFEKYLW-SKGITAIIRKSKGQDIKAACGQLKAEELG 347 (354)
T ss_pred HHHHHHHHHH-HCCCeEEEeCCCCCchHhccccchhhhhh
Confidence 9999999999 79999999999999999999999776544
No 17
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.8e-42 Score=314.93 Aligned_cols=250 Identities=42% Similarity=0.720 Sum_probs=225.2
Q ss_pred CCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhccCCcce
Q 022752 3 CQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRN 82 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~ 82 (292)
..||..+|+|+||++. |.++++|++.|||++|.||..+..+..+.++++|+++++.......+++.
T Consensus 86 ~~dg~~iE~V~~~~~~--------------~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~ 151 (349)
T PRK14463 86 LEDGNAVESVLIPDED--------------RNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRN 151 (349)
T ss_pred cCCCCeEEEEEEEecC--------------CcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccE
Confidence 5799999999999754 48999999999999999999887666788999999999987644346899
Q ss_pred EEEecCCccccCHHHHHHHHHHHhC-CCCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccC
Q 022752 83 VVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 161 (292)
Q Consensus 83 I~fsG~GEPll~~~~i~ell~~~~~-~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~ 161 (292)
|+|+|+||||+|++.++++++.+++ .|++++..+++|+|||+.+.+.++.... .+.+.||+|+++++.|+.++|.++.
T Consensus 152 IvfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~~~-~~~LaiSL~a~~~e~r~~I~pink~ 230 (349)
T PRK14463 152 IVFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGREV-TVNLAVSLNATTDEVRDRIMPVNRR 230 (349)
T ss_pred EEEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhhcc-CeEEEEeCCCCCHHHHHHhcCcccC
Confidence 9999999999999999999999986 5877888899999999987777776543 4667899999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHHHHHHHH
Q 022752 162 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241 (292)
Q Consensus 162 ~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~ 241 (292)
+++++++++++.+....+.++++++++++|+||+.+++.+++++++.+++.++++||||.+ ...+++|+.+++..|+++
T Consensus 231 ~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~-~~~~~~ps~e~i~~f~~~ 309 (349)
T PRK14463 231 YPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHE-GCDFRSPTQEAIDRFHKY 309 (349)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCC-CCCCCCCCHHHHHHHHHH
Confidence 9999999999888888889999999999999999999999999999998889999999984 568999999999999999
Q ss_pred HHhcCCeEEEeecccccccccccccccc
Q 022752 242 LRGSYNIRTTVRKQMGQDISGACGQLVV 269 (292)
Q Consensus 242 l~~~~g~~v~ir~~~g~~~~~~c~~~~~ 269 (292)
++ ++|+.+++|..+|.||.++|||+..
T Consensus 310 L~-~~gi~v~vR~~~G~di~aaCGqL~~ 336 (349)
T PRK14463 310 LL-DKHVTVITRSSRGSDISAACGQLKG 336 (349)
T ss_pred HH-HCCceEEEeCCCCcchhhccCcccc
Confidence 99 8999999999999999999999965
No 18
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.3e-41 Score=310.78 Aligned_cols=253 Identities=42% Similarity=0.727 Sum_probs=224.4
Q ss_pred CCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc-----
Q 022752 3 CQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----- 77 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~----- 77 (292)
..| ..+|+|++|++. |.++++|++.||+++|.||+++..+..++++.+|+++++.....+
T Consensus 87 l~D-~~iEsV~~~~~~--------------~~t~CvSsQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~ 151 (372)
T PRK11194 87 VGD-QRVETVYIPEDD--------------RATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAK 151 (372)
T ss_pred cCC-CeEEEEEEEcCC--------------CeeEEEecCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhcc
Confidence 467 889999999754 489999999999999999999987788899999999998765432
Q ss_pred ----CCcceEEEecCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHH
Q 022752 78 ----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 152 (292)
Q Consensus 78 ----~~~~~I~fsG~GEPll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~ 152 (292)
..+.+|+|.|+||||+|++++.++++.+++. |+++...+++|+|+|..+.+.++++.. .+.+.+|+++++++.|
T Consensus 152 ~~gg~~~~nvV~mGmGEPL~N~d~v~~al~~l~~~~g~~i~~r~itVsTsG~~~~i~~l~~~~-d~~LaiSLha~d~e~R 230 (372)
T PRK11194 152 VTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMI-DVALAISLHAPNDELR 230 (372)
T ss_pred ccCCcccceEEEecCCccccCHHHHHHHHHHHhhhhccCcCCCeEEEECCCCchHHHHHHhcc-CeEEEeeccCCCHHHH
Confidence 1378899999999999999999999999854 777777899999999988888887754 4667789999999999
Q ss_pred hhhcCcccCccHHHHHHHHHHHHHhhC---CeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCC
Q 022752 153 CQIMPAARAFPLEKLMNALKEYQKNSQ---QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 229 (292)
Q Consensus 153 ~~i~~~~~~~~~~~vi~~l~~~~~~~~---~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~ 229 (292)
++++|.+..++.++++++++.+..+.+ .+++++++++||+||+.+++++++++++.+++.|+++||||.+ ...|+.
T Consensus 231 ~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN~~~-~~~~~~ 309 (372)
T PRK11194 231 DEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFP-GAPYGR 309 (372)
T ss_pred HHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCCCCC-CCCCCC
Confidence 999999888899999999989988774 7899999999999999999999999999988889999999984 567899
Q ss_pred CcHHHHHHHHHHHHhcCCeEEEeecccccccccccccccccCcC
Q 022752 230 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 273 (292)
Q Consensus 230 ~~~e~l~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~~~~ 273 (292)
|+.+++..|.++++ .+|+.+++|...|.||.++|||+..+.-+
T Consensus 310 ps~e~v~~f~~~L~-~~Gi~vtiR~~~G~di~aaCGQL~~~~~~ 352 (372)
T PRK11194 310 SSNSRIDRFSKVLM-EYGFTVIVRKTRGDDIDAACGQLAGDVID 352 (372)
T ss_pred CCHHHHHHHHHHHH-HCCCeEEEecCCCCcchhcCcCcHhhhhh
Confidence 99999999999999 79999999999999999999999876633
No 19
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=100.00 E-value=3.8e-41 Score=301.38 Aligned_cols=256 Identities=46% Similarity=0.785 Sum_probs=234.0
Q ss_pred CCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc-----
Q 022752 3 CQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----- 77 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~----- 77 (292)
..||...|+|++|+.. |+++++|++.||++.|.||+.++.+..+.++..|+++++..+.+.
T Consensus 84 l~dg~~iEtV~ip~~~--------------r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~ 149 (349)
T COG0820 84 LPDGTMIETVLIPEKD--------------RNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDF 149 (349)
T ss_pred cCCCCEEEEEEEEecC--------------CceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccc
Confidence 4688889999999876 389999999999999999999998889999999999999875421
Q ss_pred -CCcceEEEecCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhh
Q 022752 78 -SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 155 (292)
Q Consensus 78 -~~~~~I~fsG~GEPll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i 155 (292)
..+.+|+|.|+|||++|++.+..+++.+.+. |++++..+++++|+|..+.+.++++....+.++||+++++++.|+.+
T Consensus 150 ~~~i~NVV~MGMGEPl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L 229 (349)
T COG0820 150 GRRISNVVFMGMGEPLLNLDNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQL 229 (349)
T ss_pred cceeeeEEEecCCchhhhHHHHHHHHHhhcCcccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCCHHHHhhh
Confidence 1378999999999999999999999999865 88898899999999998888898865556889999999999999999
Q ss_pred cCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHH
Q 022752 156 MPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 235 (292)
Q Consensus 156 ~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l 235 (292)
+|.++.++.+.++++++.+....+.+|++++++++++||+.++.++|+++++.+.+.|+++||+|. +...|..++.+++
T Consensus 230 ~Pink~~~~e~l~~a~r~Y~~~t~~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np~-~~~~y~r~~~~~i 308 (349)
T COG0820 230 MPINKKYPIEELLEAIRYYPEKSGRRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNPV-PGSDYERSSKERI 308 (349)
T ss_pred hccccCCCHHHHHHHHHhhhhccCceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCCC-CCCCccCCcHHHH
Confidence 999999999999999999988889999999999999999999999999999999889999999998 4667999999999
Q ss_pred HHHHHHHHhcCCeEEEeecccccccccccccccccCcCc
Q 022752 236 SSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274 (292)
Q Consensus 236 ~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~~~~~ 274 (292)
..|.+.|. .+|+.+.+|...|+||.++|||++.+..+.
T Consensus 309 ~~F~~~L~-~~gv~~tvR~~~g~DIdaACGQL~~~~~~~ 346 (349)
T COG0820 309 RKFLKILK-KAGVLVTVRKTRGDDIDAACGQLRGKRIKR 346 (349)
T ss_pred HHHHHHHH-hCCeeEEeccccccccccccchhhhhhchh
Confidence 99999999 799999999999999999999998887553
No 20
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.5e-40 Score=301.41 Aligned_cols=248 Identities=33% Similarity=0.604 Sum_probs=223.2
Q ss_pred CCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhccCCcce
Q 022752 3 CQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRN 82 (292)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~ 82 (292)
..||..+|+|+||+ .++++|++.||+++|.||..+..+..+.++++|+++++..+.....++.
T Consensus 82 l~Dg~~iEtV~i~~-----------------~t~CvSsQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~~~i~n 144 (344)
T PRK14464 82 LADGQMVESVLLPR-----------------DGLCVSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRRRAVKK 144 (344)
T ss_pred cCCCCEEEEEEecC-----------------CcEEEEccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 57999999999993 2699999999999999999998877889999999999988665556899
Q ss_pred EEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCc
Q 022752 83 VVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 162 (292)
Q Consensus 83 I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~ 162 (292)
|+|+|+||||+|++.+++.++.+.+. .+++..+++++|.|..+...++........+.+||++++++.+..++|.++++
T Consensus 145 IVfmGmGEPl~N~d~vl~ai~~l~~~-~~i~~r~itiST~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~ 223 (344)
T PRK14464 145 VVFMGMGEPAHNLDNVLEAIDLLGTE-GGIGHKNLVFSTVGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRI 223 (344)
T ss_pred EEEeccCcccCCHHHHHHHHHHhhch-hcCCCceEEEecccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCC
Confidence 99999999999999999999988765 34556899999999877777877754446678899999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHHHHHHHHH
Q 022752 163 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 242 (292)
Q Consensus 163 ~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l 242 (292)
++++++++++.|.+.+|.++++++++++|+||+.+++.+|+++++.+.+.++++||+|. +...+..|+.+++..|++.|
T Consensus 224 ~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v-~g~~~~rp~~~~i~~f~~~L 302 (344)
T PRK14464 224 APEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSV-DGDAYRRPSGERIVAMARYL 302 (344)
T ss_pred CHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCcc-CCCCccCCCHHHHHHHHHHH
Confidence 99999999999988899999999999999999999999999999988888999999998 46678899999999999999
Q ss_pred HhcCCeEEEeeccccccccccccccccc
Q 022752 243 RGSYNIRTTVRKQMGQDISGACGQLVVN 270 (292)
Q Consensus 243 ~~~~g~~v~ir~~~g~~~~~~c~~~~~~ 270 (292)
+ ..|+.+++|...|.||.++|||+..+
T Consensus 303 ~-~~gi~~tiR~~~G~di~aACGqL~~~ 329 (344)
T PRK14464 303 H-RRGVLTKVRNSAGQDVDGGCGQLRAR 329 (344)
T ss_pred H-HCCceEEEECCCCCchhhcCcchhhh
Confidence 9 79999999999999999999999654
No 21
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=100.00 E-value=2.1e-31 Score=234.63 Aligned_cols=211 Identities=19% Similarity=0.390 Sum_probs=169.5
Q ss_pred CCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCC---CCcCCCCHHHHHHHHHHhhcc--CCcceEEEecCCccc
Q 022752 18 SSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPL 92 (292)
Q Consensus 18 ~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~---~~~~~~~~eei~~~i~~~~~~--~~~~~I~fsG~GEPl 92 (292)
..|+.+|| ||.|.++|+ .|||++|.||+++.. ...+.++++++++++.+...+ .....|+|+| ||||
T Consensus 11 ~~~~~~dg----~g~~~~~f~---~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sG-GEPl 82 (246)
T PRK11145 11 ESCGTVDG----PGIRFITFF---QGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASG-GEAI 82 (246)
T ss_pred EEEeeECC----CCeEEEEEE---CCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeC-ccHh
Confidence 45778999 899999998 899999999998642 234568999999988765432 1235899999 9999
Q ss_pred cCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh----HHHHhhhCCCce-EEEEecCCChHHHhhhcCcccCccHHHH
Q 022752 93 NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA----INKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKL 167 (292)
Q Consensus 93 l~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~----~~~l~~~~~~~~-l~iSld~~~~~~~~~i~~~~~~~~~~~v 167 (292)
++++.+.++++.+++.| ..+.+.|||+++. +.+++. .++ +.+|+|+.+++.|+.+++. +.+.+
T Consensus 83 l~~~~~~~l~~~~k~~g-----~~i~l~TNG~~~~~~~~~~~ll~---~~d~v~islk~~~~e~~~~~~g~----~~~~~ 150 (246)
T PRK11145 83 LQAEFVRDWFRACKKEG-----IHTCLDTNGFVRRYDPVIDELLD---VTDLVMLDLKQMNDEIHQNLVGV----SNHRT 150 (246)
T ss_pred cCHHHHHHHHHHHHHcC-----CCEEEECCCCCCcchHHHHHHHH---hCCEEEECCCcCChhhcccccCC----ChHHH
Confidence 99888889999999988 6799999998642 223332 244 6789999999999888643 45788
Q ss_pred HHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCC-c-EEEEEecCCCC-----------CCCCcCCCcHHH
Q 022752 168 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-V-VVNLIPFNPIG-----------SVSQFRTSSDDK 234 (292)
Q Consensus 168 i~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~-~-~v~l~p~~p~~-----------~~~~~~~~~~e~ 234 (292)
++++ +.+.+.+.++.+++++++|+||+++++++++++++.++ + .++++||++.+ +..++++++.++
T Consensus 151 l~~i-~~l~~~g~~v~i~~~li~g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 229 (246)
T PRK11145 151 LEFA-RYLAKRNQKTWIRYVVVPGWTDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKET 229 (246)
T ss_pred HHHH-HHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCcccccCCCCCCHHH
Confidence 8888 45667788999999999999999999999999999875 3 48899999864 123567899999
Q ss_pred HHHHHHHHHhcCCeEE
Q 022752 235 VSSFQKILRGSYNIRT 250 (292)
Q Consensus 235 l~~~~~~l~~~~g~~v 250 (292)
+++++++++ ++|+.+
T Consensus 230 l~~~~~~~~-~~g~~~ 244 (246)
T PRK11145 230 MERVKGILE-QYGHKV 244 (246)
T ss_pred HHHHHHHHH-HcCCcc
Confidence 999999998 688764
No 22
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.4e-29 Score=220.52 Aligned_cols=210 Identities=16% Similarity=0.320 Sum_probs=164.2
Q ss_pred CCCCCCCCCCCCCC-CceEEEEEcCCCCCcCCcCcCCCCCCC-cCCCCHHHHHHHHHH-hhcc-CCcceEEEecCCcccc
Q 022752 18 SSLGKYNGKPRPGG-PRSTLCISSQVGCKMGCNFCATGTMGF-KSNLSSGEIVEQLVH-ASRL-SNIRNVVFMGMGEPLN 93 (292)
Q Consensus 18 ~~~~~~~g~~~~~~-~r~~l~is~t~gCNl~C~yC~~~~~~~-~~~~~~eei~~~i~~-~~~~-~~~~~I~fsG~GEPll 93 (292)
++++.+|| +| .|+++|+ .|||++|.||+||.... ++..+.+++..++.. .... .+..+|+||| |||++
T Consensus 25 e~~~~~d~----~g~~~~~vf~---~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SG-GEP~~ 96 (260)
T COG1180 25 EKKPLVDG----PGSIRLSVFL---QGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSG-GEPTL 96 (260)
T ss_pred cccCCcCC----CCcEEEEEEe---CCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEEC-Ccchh
Confidence 44999999 66 8888888 99999999999986544 234444444433332 2222 2578999999 99999
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh--HHHHhhhCCCce-EEEEecCCChHHHhhhcCcccCccHHHHHHH
Q 022752 94 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA--INKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 170 (292)
Q Consensus 94 ~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~-l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~ 170 (292)
+++++.++++.+++.| .++.+.|||+... ..++.+. .| +.++|++.+++.|+++++ .+.+.++++
T Consensus 97 q~e~~~~~~~~ake~G-----l~~~l~TnG~~~~~~~~~l~~~---~D~v~~DlK~~~~~~y~~~tg----~~~~~vl~~ 164 (260)
T COG1180 97 QAEFALDLLRAAKERG-----LHVALDTNGFLPPEALEELLPL---LDAVLLDLKAFDDELYRKLTG----ADNEPVLEN 164 (260)
T ss_pred hHHHHHHHHHHHHHCC-----CcEEEEcCCCCCHHHHHHHHhh---cCeEEEeeccCChHHHHHHhC----CCcHHHHHH
Confidence 9999999999999998 7899999998754 2233332 44 568999999998888863 344899999
Q ss_pred HHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCc--EEEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCe
Q 022752 171 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV--VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNI 248 (292)
Q Consensus 171 l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~--~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~ 248 (292)
+ +++.+.++.++++++++||+||++++++++++++++++. .+.+.+|+|.+.....++...++++++.+..+ +.+.
T Consensus 165 ~-~~l~~~g~~ve~r~lviPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~~~~~p~~~~~~le~~~~~a~-~~~~ 242 (260)
T COG1180 165 L-ELLADLGVHVEIRTLVIPGYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYKLKDLPPTPVETLEEAKKLAK-EEGL 242 (260)
T ss_pred H-HHHHcCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhcCCcccEEEeccccCccccccCCCcHHHHHHhHhhhH-HHHH
Confidence 9 567778999999999999999999999999999998654 38999999987555556677788888877776 4444
Q ss_pred E
Q 022752 249 R 249 (292)
Q Consensus 249 ~ 249 (292)
.
T Consensus 243 ~ 243 (260)
T COG1180 243 K 243 (260)
T ss_pred H
Confidence 3
No 23
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.97 E-value=2.2e-28 Score=213.88 Aligned_cols=206 Identities=17% Similarity=0.373 Sum_probs=164.0
Q ss_pred CCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCC---CCcCCCCHHHHHHHHHHhhccC--CcceEEEecCCccc
Q 022752 18 SSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPL 92 (292)
Q Consensus 18 ~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~---~~~~~~~~eei~~~i~~~~~~~--~~~~I~fsG~GEPl 92 (292)
++|+.+|| ||.+..++. .|||++|.||+++.. .....++++++++.+.+..... ....|+|+| ||||
T Consensus 6 ~~~~~~~g----~g~~~~v~~---~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~G-GEPl 77 (235)
T TIGR02493 6 ESMGTVDG----PGIRFVVFM---QGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSG-GEPL 77 (235)
T ss_pred EeccccCC----CCceEEEEE---CCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeC-cccc
Confidence 35788999 888888777 899999999998532 2235689999988887754321 125799999 9999
Q ss_pred cCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchh---h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHH
Q 022752 93 NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH---A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 168 (292)
Q Consensus 93 l~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~---~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi 168 (292)
++++.+.++++++++.| ..+.+.|||++. + +.++++. ...+.||+++.+++.|..+.+ .++++++
T Consensus 78 l~~~~~~~li~~~~~~g-----~~~~i~TNG~~~~~~~~~~~ll~~--~d~v~isl~~~~~~~~~~~~g----~~~~~v~ 146 (235)
T TIGR02493 78 LQPEFLSELFKACKELG-----IHTCLDTSGFLGGCTEAADELLEY--TDLVLLDIKHFNPEKYKKLTG----VSLQPTL 146 (235)
T ss_pred cCHHHHHHHHHHHHHCC-----CCEEEEcCCCCCccHHHHHHHHHh--CCEEEEeCCCCCHHHHHHHHC----CCcHHHH
Confidence 99887889999999987 578999999642 1 3444442 134668999999999988753 2688999
Q ss_pred HHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCc-E-EEEEecCCCC-----------CCCCcCCCcHHHH
Q 022752 169 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-V-VNLIPFNPIG-----------SVSQFRTSSDDKV 235 (292)
Q Consensus 169 ~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~-~-v~l~p~~p~~-----------~~~~~~~~~~e~l 235 (292)
+++ +.+++.+..+.++++++++++++.++++++++++.+++. . +.++||+|.+ ...++++|+.+++
T Consensus 147 ~~i-~~l~~~g~~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 225 (235)
T TIGR02493 147 DFA-KYLAKRNKPIWIRYVLVPGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQL 225 (235)
T ss_pred HHH-HHHHhCCCcEEEEEeeeCCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHH
Confidence 999 566778888999999999999999999999999999884 3 8899999854 1345788999999
Q ss_pred HHHHHHHH
Q 022752 236 SSFQKILR 243 (292)
Q Consensus 236 ~~~~~~l~ 243 (292)
++++++++
T Consensus 226 ~~~~~~~~ 233 (235)
T TIGR02493 226 ERAAEIFK 233 (235)
T ss_pred HHHHHHHh
Confidence 99999887
No 24
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.95 E-value=3e-27 Score=213.56 Aligned_cols=204 Identities=17% Similarity=0.346 Sum_probs=161.9
Q ss_pred CCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCC----------------------------------------
Q 022752 19 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF---------------------------------------- 58 (292)
Q Consensus 19 ~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~---------------------------------------- 58 (292)
.|+.+|| ||.|.++|+ +|||++|.+|+++....
T Consensus 6 ~~~~~~g----~g~r~~~f~---~gc~~~C~~c~~p~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~~~~~~~ 78 (295)
T TIGR02494 6 RYSVHDG----PGIRTTVFL---KGCPLRCKWCSNPESQRKSPELLFKENRCLGCGKCVEVCPAGTARLSELADGRNRII 78 (295)
T ss_pred cccccCC----CCchhHHHh---hcCCccCcccCCccccCCCceEEEccccCCCCchhhhhCcccccccccccCCCccee
Confidence 4789999 999999999 89999999998853210
Q ss_pred ------------------------cCCCCHHHHHHHHHHhhccC--CcceEEEecCCccccCHHHHHHHHHHHhCCCCCC
Q 022752 59 ------------------------KSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQV 112 (292)
Q Consensus 59 ------------------------~~~~~~eei~~~i~~~~~~~--~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~ 112 (292)
+..++.+++++.+.+...+. ....|+|+| ||||++++.+.++++++++.|
T Consensus 79 ~~~~~C~~Cg~C~~~CP~~Ai~~~g~~~t~eel~~~i~~~~~~~~~~~~~V~~sG-GEPll~~~~l~~l~~~~k~~g--- 154 (295)
T TIGR02494 79 IRREKCTHCGKCTEACPSGALSIVGEEMTVEEVMRVVLRDSIFYRNSGGGVTLSG-GEPLLQPEFALALLQACHERG--- 154 (295)
T ss_pred echhhcCchhHhhccCcHhHHhhhccCCcHHHHHHHHHHHHHhcccCCCcEEeeC-cchhchHHHHHHHHHHHHHcC---
Confidence 12346777777776543221 346899999 999999887789999999988
Q ss_pred CCCeEEEEcCCchhh--HHHHhhhCCCce-EEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEe
Q 022752 113 SPKRITVSTVGIVHA--INKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIML 189 (292)
Q Consensus 113 ~~~~i~l~TNG~~~~--~~~l~~~~~~~~-l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~ 189 (292)
..+.+.|||++.. ..+++. ..+ +.+|+++.+++.|.++++ .+++.++++++ ++.+.+.++.++++++
T Consensus 155 --~~~~i~TnG~~~~~~~~~ll~---~~d~~~isl~~~~~~~~~~~~g----~~~~~vl~~i~-~l~~~~~~~~i~~~~v 224 (295)
T TIGR02494 155 --IHTAVETSGFTPWETIEKVLP---YVDLFLFDIKHLDDERHKEVTG----VDNEPILENLE-ALAAAGKNVVIRIPVI 224 (295)
T ss_pred --CcEeeeCCCCCCHHHHHHHHh---hCCEEEEeeccCChHHHHHHhC----CChHHHHHHHH-HHHhCCCcEEEEecee
Confidence 6799999998653 233332 244 458999999999988854 36789999995 5566788999999999
Q ss_pred CCCCChHHHHHHHHHHHhhCC--c-EEEEEecCCCCC-----------CCCcCCCcHHHHHHHHHHHH
Q 022752 190 DGVNDEEQHAHQLGKLLETFQ--V-VVNLIPFNPIGS-----------VSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 190 ~g~nd~~~~l~~l~~~l~~~~--~-~v~l~p~~p~~~-----------~~~~~~~~~e~l~~~~~~l~ 243 (292)
+++||+.++++++++++++++ + .+++++|+|.+. ..+++.|+.++++++++.++
T Consensus 225 ~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 292 (295)
T TIGR02494 225 PGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYHRLGENKYRQLGREYPDSEIPDPAEEQLLELKEIFE 292 (295)
T ss_pred CCcCCCHHHHHHHHHHHHHhccCCceEEecCCCchhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999987 4 489999999751 23455799999999998887
No 25
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.95 E-value=1.2e-26 Score=207.20 Aligned_cols=230 Identities=18% Similarity=0.256 Sum_probs=171.7
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCC-CCCc---CCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCC
Q 022752 33 RSTLCISSQVGCKMGCNFCATGT-MGFK---SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 108 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~-~~~~---~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~ 108 (292)
...|-+|+|..|||+|.||+... .... ..++++|+...+..... .|++.|-+|| ||||+. ++|.++++.+++.
T Consensus 10 ~~~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~-~Gv~kvRlTG-GEPllR-~dl~eIi~~l~~~ 86 (322)
T COG2896 10 VRYLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAE-LGVEKVRLTG-GEPLLR-KDLDEIIARLARL 86 (322)
T ss_pred eceEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHH-cCcceEEEeC-CCchhh-cCHHHHHHHHhhc
Confidence 45677888999999999998854 3332 36889998888877666 5899999999 999998 6699999999986
Q ss_pred CCCCCCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCC-eEEEE
Q 022752 109 PFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIE 185 (292)
Q Consensus 109 g~~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~-~v~i~ 185 (292)
+ ...++++|||+++. ..+|.+++ ...+.||+|+.+++.|.++++. ..+++|++++. .+.+.|. ++.+|
T Consensus 87 ~----~~~islTTNG~~L~~~a~~Lk~AG-l~rVNVSLDsld~e~f~~IT~~---~~~~~Vl~GI~-~A~~~Gl~pVKlN 157 (322)
T COG2896 87 G----IRDLSLTTNGVLLARRAADLKEAG-LDRVNVSLDSLDPEKFRKITGR---DRLDRVLEGID-AAVEAGLTPVKLN 157 (322)
T ss_pred c----cceEEEecchhhHHHHHHHHHHcC-CcEEEeecccCCHHHHHHHhCC---CcHHHHHHHHH-HHHHcCCCceEEE
Confidence 4 26899999998754 45666665 4679999999999999999744 45999999995 4556666 59999
Q ss_pred EEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCc--C-CCcHHHHHHHHHH-H-----H-hcCC--------
Q 022752 186 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF--R-TSSDDKVSSFQKI-L-----R-GSYN-------- 247 (292)
Q Consensus 186 ~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~--~-~~~~e~l~~~~~~-l-----~-~~~g-------- 247 (292)
+|+++|+|| +++.++++|++..+..+.++-|+|.+....+ . ..+.+++.+..+. . + +..+
T Consensus 158 ~Vv~kgvNd--~ei~~l~e~~~~~~~~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~~~ 235 (322)
T COG2896 158 TVLMKGVND--DEIEDLLEFAKERGAQLRFIELMPLGEGNSWRLDKYLSLDEILRKLEERATLLPVRKRLHGRAKYFIHP 235 (322)
T ss_pred EEEecCCCH--HHHHHHHHHHhhcCCceEEEEEeecCcccchhhhccccHHHHHHHHHhhccccccccccCCCceEEEeC
Confidence 999999877 4799999999999988899989988632211 1 1233333322111 0 0 0011
Q ss_pred --eEEEeecccccccccccccccccCcCccc
Q 022752 248 --IRTTVRKQMGQDISGACGQLVVNLPDKIS 276 (292)
Q Consensus 248 --~~v~ir~~~g~~~~~~c~~~~~~~~~~~~ 276 (292)
..+.+-.+..++.|++|.+.+.+.+-|+-
T Consensus 236 ~~~~ig~I~p~~~~FC~~CnR~Rlt~dGkl~ 266 (322)
T COG2896 236 DGGEIGFIAPVSNPFCATCNRLRLTADGKLK 266 (322)
T ss_pred CCcEEEEEcCCCchhhhhcceeeeccCCeEE
Confidence 14444444556699999999999988763
No 26
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.94 E-value=2.2e-25 Score=204.51 Aligned_cols=228 Identities=18% Similarity=0.266 Sum_probs=164.4
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCC----CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCC
Q 022752 34 STLCISSQVGCKMGCNFCATGTM----GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 109 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~----~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g 109 (292)
..+.+++|.+||++|.||+.+.. .....++.+++.+.+...... ++..|.|+| ||||++ +.+.++++++++.+
T Consensus 17 ~~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~-gi~~I~~tG-GEPll~-~~l~~li~~i~~~~ 93 (331)
T PRK00164 17 TYLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVAL-GVRKVRLTG-GEPLLR-KDLEDIIAALAALP 93 (331)
T ss_pred CeEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHC-CCCEEEEEC-CCCcCc-cCHHHHHHHHHhcC
Confidence 36778889999999999998652 234568999988888765543 789999999 999998 45889999998862
Q ss_pred CCCCCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCC-eEEEEE
Q 022752 110 FQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEY 186 (292)
Q Consensus 110 ~~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~-~v~i~~ 186 (292)
....+.++|||++.. +.++.+++ ...+.||+|+.+++.+..+++ ..++++++++++ .+.+.+. .+.+++
T Consensus 94 ---~~~~i~itTNG~ll~~~~~~L~~ag-l~~i~ISlds~~~e~~~~i~~---~~~~~~vl~~i~-~~~~~g~~~v~i~~ 165 (331)
T PRK00164 94 ---GIRDLALTTNGYLLARRAAALKDAG-LDRVNVSLDSLDPERFKAITG---RDRLDQVLAGID-AALAAGLTPVKVNA 165 (331)
T ss_pred ---CCceEEEEcCchhHHHHHHHHHHcC-CCEEEEEeccCCHHHhccCCC---CCCHHHHHHHHH-HHHHCCCCcEEEEE
Confidence 125799999997643 34555554 356889999999999998854 368999999995 4556676 899999
Q ss_pred EEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcC-----------Ce-------
Q 022752 187 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY-----------NI------- 248 (292)
Q Consensus 187 vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~-----------g~------- 248 (292)
++++|.|+ +++.+++++++++++.+.++.|+|.+....+........+.+.+.++ +. +-
T Consensus 166 vv~~g~n~--~ei~~l~~~~~~~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~ 242 (331)
T PRK00164 166 VLMKGVND--DEIPDLLEWAKDRGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLA-ERGWTLQPRARSGGPAQYFRHP 242 (331)
T ss_pred EEECCCCH--HHHHHHHHHHHhCCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHH-hccCcccccCCCCCCCEEEEEC
Confidence 99999876 68999999999999988899888875432332222122333333333 11 11
Q ss_pred ----EEEeecccccccccccccccccCcCcc
Q 022752 249 ----RTTVRKQMGQDISGACGQLVVNLPDKI 275 (292)
Q Consensus 249 ----~v~ir~~~g~~~~~~c~~~~~~~~~~~ 275 (292)
.+-+.....+..|.+|.+++++.--++
T Consensus 243 ~~~~~ig~i~~~s~~fC~~c~r~r~t~dG~l 273 (331)
T PRK00164 243 DYGGEIGLIAPVTHDFCASCNRLRLTADGKL 273 (331)
T ss_pred CCCeEEEEEeCCCCcccccCCeEEEcCCCcE
Confidence 121222233457899999988876554
No 27
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.94 E-value=3.3e-25 Score=203.01 Aligned_cols=229 Identities=18% Similarity=0.258 Sum_probs=165.8
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCC---CcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCC
Q 022752 34 STLCISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 110 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~---~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~ 110 (292)
..+.+++|.+||++|.||+..... ....++.+++...+..... .++..|.|+| ||||++ +.+.++++++++.+.
T Consensus 14 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~-~Gv~~I~~tG-GEPllr-~dl~~li~~i~~~~~ 90 (329)
T PRK13361 14 TYLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTE-LGVRKIRLTG-GEPLVR-RGCDQLVARLGKLPG 90 (329)
T ss_pred CeEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHH-CCCCEEEEEC-cCCCcc-ccHHHHHHHHHhCCC
Confidence 367778899999999999975322 2346888998877766554 4789999999 999998 558899999998740
Q ss_pred CCCCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCC-eEEEEEE
Q 022752 111 QVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEYI 187 (292)
Q Consensus 111 ~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~-~v~i~~v 187 (292)
...+.++|||++.. +.++.+.+ ...+.||+|+.+++.|.++++ ..+++++++++ +.+.+.|. .+.++++
T Consensus 91 ---l~~i~itTNG~ll~~~~~~L~~aG-l~~v~ISlDs~~~e~~~~i~~---~g~~~~vl~~i-~~~~~~Gi~~v~in~v 162 (329)
T PRK13361 91 ---LEELSLTTNGSRLARFAAELADAG-LKRLNISLDTLRPELFAALTR---NGRLERVIAGI-DAAKAAGFERIKLNAV 162 (329)
T ss_pred ---CceEEEEeChhHHHHHHHHHHHcC-CCeEEEEeccCCHHHhhhhcC---CCCHHHHHHHH-HHHHHcCCCceEEEEE
Confidence 02689999998643 34555544 356889999999999998864 36899999999 55667777 7999999
Q ss_pred EeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCc---CCCcHHHHH-HHHHHHH------hcCC----------
Q 022752 188 MLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF---RTSSDDKVS-SFQKILR------GSYN---------- 247 (292)
Q Consensus 188 l~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~---~~~~~e~l~-~~~~~l~------~~~g---------- 247 (292)
++++.|+ +++.++++++.++++.+.++.|+|.+....+ ...+.+++. .+.+... ...|
T Consensus 163 ~~~g~N~--~ei~~~~~~~~~~gi~~~~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (329)
T PRK13361 163 ILRGQND--DEVLDLVEFCRERGLDIAFIEEMPLGEIDERRRARHCSSDEVRAIIETRYPLTPSNKRTGGPARYYTMADS 240 (329)
T ss_pred EECCCCH--HHHHHHHHHHHhcCCeEEEEecccCCCccchhhccCcCHHHHHHHHHHhCCcccCCCCCCCCCeEEEECCC
Confidence 9998765 6899999999999998888889998643221 223455543 3333211 0011
Q ss_pred -eEEEeecccccccccccccccccCcCcc
Q 022752 248 -IRTTVRKQMGQDISGACGQLVVNLPDKI 275 (292)
Q Consensus 248 -~~v~ir~~~g~~~~~~c~~~~~~~~~~~ 275 (292)
-.+-+.....+..|.+|.+++.+.--|+
T Consensus 241 ~~~ig~I~~~s~~fC~~Cnr~rlt~~G~l 269 (329)
T PRK13361 241 PIHIGFISPHSHNFCHECNRVRVTAEGQL 269 (329)
T ss_pred CeEEEEEcCCCccccccCCeEEEccCCcE
Confidence 1222333445678999999999886554
No 28
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.94 E-value=1.8e-25 Score=211.01 Aligned_cols=203 Identities=16% Similarity=0.321 Sum_probs=155.4
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCC-------C-CcCCCCHHHHHHHHHHhhcc-CCcceEEEecCCccccCHHHHHHHH
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTM-------G-FKSNLSSGEIVEQLVHASRL-SNIRNVVFMGMGEPLNNYAALVEAV 102 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~-------~-~~~~~~~eei~~~i~~~~~~-~~~~~I~fsG~GEPll~~~~i~ell 102 (292)
.|..+.+ +.+||++|.||++... + ..+.++++++++.+.+.... .++..|+|+|+||||+|++++.+.+
T Consensus 24 ~r~~~~v--t~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l 101 (442)
T TIGR01290 24 ARMHLAV--APACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTL 101 (442)
T ss_pred CEEEEec--CCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHH
Confidence 4455555 7999999999998421 1 23569999999999886542 3568899999999999988888999
Q ss_pred HHHhCCCCCCCCCeEEEEcCCchh-h-HHHHhhhCCCceEEEEecCCChHHHhhhcCc----c---cCc-----cHHHHH
Q 022752 103 RIMTGLPFQVSPKRITVSTVGIVH-A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPA----A---RAF-----PLEKLM 168 (292)
Q Consensus 103 ~~~~~~g~~~~~~~i~l~TNG~~~-~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~----~---~~~-----~~~~vi 168 (292)
+.+++.. +.++++|+|||++. + +.++.+.+ ...+.||||+.+++.|.++++- + .+. .+++++
T Consensus 102 ~~~~~~~---~~i~i~lsTNG~~l~e~i~~L~~~g-vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l 177 (442)
T TIGR01290 102 ELVARQL---PDVKLCLSTNGLMLPEHVDRLVDLG-VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQL 177 (442)
T ss_pred HHHHHhc---CCCeEEEECCCCCCHHHHHHHHHCC-CCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHH
Confidence 9998861 12789999999753 2 45655543 2457799999999999876321 0 111 267778
Q ss_pred HHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCC------CCCcCCCcHHHHHHHHHH
Q 022752 169 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGS------VSQFRTSSDDKVSSFQKI 241 (292)
Q Consensus 169 ~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~------~~~~~~~~~e~l~~~~~~ 241 (292)
++++ .+.+.|..+.++++++||+|| +++.+++++++++++. ++++||+|.+. ..+.+.|+.+++..+++.
T Consensus 178 ~~l~-~l~~~G~~v~v~~vlIpGiND--~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~ 254 (442)
T TIGR01290 178 EGLE-KLTERGILVKVNSVLIPGIND--EHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDR 254 (442)
T ss_pred HHHH-HHHhCCCeEEEEEEeeCCcCH--HHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHH
Confidence 9994 556678899999999999998 6899999999999875 88999997641 123478999999999988
Q ss_pred HH
Q 022752 242 LR 243 (292)
Q Consensus 242 l~ 243 (292)
++
T Consensus 255 ~~ 256 (442)
T TIGR01290 255 LE 256 (442)
T ss_pred HH
Confidence 77
No 29
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.94 E-value=4.9e-25 Score=200.43 Aligned_cols=197 Identities=21% Similarity=0.239 Sum_probs=153.8
Q ss_pred CCCCcCCcCcCCCCCC-------CcCCCCHHHHHHHHHHhhc-----cCC--------------cceEEEecCCccccCH
Q 022752 42 VGCKMGCNFCATGTMG-------FKSNLSSGEIVEQLVHASR-----LSN--------------IRNVVFMGMGEPLNNY 95 (292)
Q Consensus 42 ~gCNl~C~yC~~~~~~-------~~~~~~~eei~~~i~~~~~-----~~~--------------~~~I~fsG~GEPll~~ 95 (292)
.|||++|.||++.... .....+++++++++.+... +.+ ...+.|||.|||||+
T Consensus 66 ~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL~- 144 (322)
T PRK13762 66 AWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTLY- 144 (322)
T ss_pred HHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccch-
Confidence 4599999999995322 1346889999999876421 112 457999977999997
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHH
Q 022752 96 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174 (292)
Q Consensus 96 ~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~ 174 (292)
++|.++++++++.| ..+.|.|||++++ ++++ ..+ ...+.||||+++++.|+.++++....+++++++++ ++
T Consensus 145 p~l~eli~~~k~~G-----i~~~L~TNG~~~e~l~~L-~~~-~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L-~~ 216 (322)
T PRK13762 145 PYLPELIEEFHKRG-----FTTFLVTNGTRPDVLEKL-EEE-PTQLYVSLDAPDEETYKKINRPVIPDAWERILETL-EL 216 (322)
T ss_pred hhHHHHHHHHHHcC-----CCEEEECCCCCHHHHHHH-Hhc-CCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHH-HH
Confidence 57999999999998 6899999998865 3444 333 35678999999999999997642356899999999 56
Q ss_pred HHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCC----CcCCCcHHHHHHHHHHHHhcCCeE
Q 022752 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS----QFRTSSDDKVSSFQKILRGSYNIR 249 (292)
Q Consensus 175 ~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~----~~~~~~~e~l~~~~~~l~~~~g~~ 249 (292)
+.+.+..+.+++++++|.|+++.+ +++++++.+++. +.+.||++.|... .-..++.+++.++.+.+.+..|+.
T Consensus 217 l~~~~~~~~ir~tlv~g~Nd~e~~--~~a~l~~~~~~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l~~~~~~~ 294 (322)
T PRK13762 217 LPSKKTRTVIRITLVKGYNMHDPE--GFAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEYTGYE 294 (322)
T ss_pred HHhCCCCEEEEEEEECCcCccHHH--HHHHHHHHcCCCEEEEECCeECCCccccccccCCcCHHHHHHHHHHHHHhcCCe
Confidence 677788999999999999997654 899999988876 8999999887432 123589999999999998434555
No 30
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.94 E-value=3.9e-25 Score=189.67 Aligned_cols=179 Identities=13% Similarity=0.196 Sum_probs=149.5
Q ss_pred cCCCCHHHHHHHHHHhhccCC--cceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh--HHHHhhh
Q 022752 59 KSNLSSGEIVEQLVHASRLSN--IRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA--INKFHSD 134 (292)
Q Consensus 59 ~~~~~~eei~~~i~~~~~~~~--~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~--~~~l~~~ 134 (292)
+..++++++++.+.+...+.. -.+|+||| |||+++++++.++++.+++.| .++.+.|||+.+. +.+++
T Consensus 16 g~~~t~eel~~~~~~~~~f~~~sggGVt~SG-GEPllq~~fl~~l~~~~k~~g-----i~~~leTnG~~~~~~~~~l~-- 87 (213)
T PRK10076 16 GRDITLDALEREVMKDDIFFRTSGGGVTLSG-GEVLMQAEFATRFLQRLRLWG-----VSCAIETAGDAPASKLLPLA-- 87 (213)
T ss_pred CcccCHHHHHHHHHhhhHhhcCCCCEEEEeC-chHHcCHHHHHHHHHHHHHcC-----CCEEEECCCCCCHHHHHHHH--
Confidence 466999999999987655432 36999999 999999999999999999998 7899999998753 23333
Q ss_pred CCCce-EEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-
Q 022752 135 LPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV- 212 (292)
Q Consensus 135 ~~~~~-l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~- 212 (292)
+.++ +.+++++.+++.|+.+++ .+.+.+++++ +++.+.+..+.++++++||+||+.+++++++++++.+++.
T Consensus 88 -~~~D~~l~DiK~~d~~~~~~~tG----~~~~~il~nl-~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~ 161 (213)
T PRK10076 88 -KLCDEVLFDLKIMDATQARDVVK----MNLPRVLENL-RLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLGIKQ 161 (213)
T ss_pred -HhcCEEEEeeccCCHHHHHHHHC----CCHHHHHHHH-HHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 3355 448999999999999864 5689999999 5567788999999999999999999999999999998775
Q ss_pred EEEEecCCCC-----------CCCCcCCCcHHHHHHHHHHHHhcCCeEEEe
Q 022752 213 VNLIPFNPIG-----------SVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252 (292)
Q Consensus 213 v~l~p~~p~~-----------~~~~~~~~~~e~l~~~~~~l~~~~g~~v~i 252 (292)
++++||+|.+ ...+.++++.+.++++++.++ +.|+.+.+
T Consensus 162 ~~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~-~~gl~~~i 211 (213)
T PRK10076 162 IHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAE-RAGFQVTV 211 (213)
T ss_pred EEEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHH-HcCCeEEe
Confidence 9999999964 233556789999999999998 78988765
No 31
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.94 E-value=1.8e-24 Score=195.98 Aligned_cols=175 Identities=23% Similarity=0.354 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCCC--cCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCC
Q 022752 34 STLCISSQVGCKMGCNFCATGTMGF--KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ 111 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~~--~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~ 111 (292)
..+.+++|.+||++|.||+.+.... ...++.+++.+.+..... .++..|.|+| ||||++++ +.++++++++.|+
T Consensus 10 ~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~-~gi~~I~~tG-GEPll~~~-l~~iv~~l~~~g~- 85 (302)
T TIGR02668 10 TSLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASE-FGVRKVKITG-GEPLLRKD-LIEIIRRIKDYGI- 85 (302)
T ss_pred CeEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHH-cCCCEEEEEC-cccccccC-HHHHHHHHHhCCC-
Confidence 3578888999999999999864322 356888887766655443 4788999999 99999855 7799999998761
Q ss_pred CCCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-EEEEEEE
Q 022752 112 VSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIM 188 (292)
Q Consensus 112 ~~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v~i~~vl 188 (292)
..++++|||++.. +.++.+.+ ...+.||+|+.+++.|+.+++ ..++++++++++. +.+.|.. +.+++++
T Consensus 86 ---~~v~i~TNG~ll~~~~~~l~~~g-~~~v~iSld~~~~~~~~~i~~---~~~~~~vl~~i~~-~~~~G~~~v~i~~v~ 157 (302)
T TIGR02668 86 ---KDVSMTTNGILLEKLAKKLKEAG-LDRVNVSLDTLDPEKYKKITG---RGALDRVIEGIES-AVDAGLTPVKLNMVV 157 (302)
T ss_pred ---ceEEEEcCchHHHHHHHHHHHCC-CCEEEEEecCCCHHHhhhccC---CCcHHHHHHHHHH-HHHcCCCcEEEEEEE
Confidence 2899999998643 33444443 356889999999999998854 4689999999954 5566665 9999999
Q ss_pred eCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCC
Q 022752 189 LDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 222 (292)
Q Consensus 189 ~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~ 222 (292)
++|.|+ +++.++++++.+.++.+.++.++|.+
T Consensus 158 ~~g~n~--~ei~~~~~~~~~~g~~~~~ie~~p~~ 189 (302)
T TIGR02668 158 LKGIND--NEIPDMVEFAAEGGAILQLIELMPPG 189 (302)
T ss_pred eCCCCH--HHHHHHHHHHHhcCCEEEEEEEeECC
Confidence 998765 57999999999999988888888875
No 32
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.93 E-value=3.5e-24 Score=198.79 Aligned_cols=226 Identities=16% Similarity=0.258 Sum_probs=160.5
Q ss_pred EEEEEcCCCCCcCCcCcCCCCCC----CcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCC-C
Q 022752 35 TLCISSQVGCKMGCNFCATGTMG----FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-P 109 (292)
Q Consensus 35 ~l~is~t~gCNl~C~yC~~~~~~----~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~-g 109 (292)
.+.+++|.+||++|.||+.+... ....++.+++.+.+..... .++..|.|+| ||||+++ .+.++++++++. |
T Consensus 59 ~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~-~Gv~~I~~tG-GEPllr~-dl~eli~~l~~~~g 135 (373)
T PLN02951 59 YLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVA-AGVDKIRLTG-GEPTLRK-DIEDICLQLSSLKG 135 (373)
T ss_pred EEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHH-CCCCEEEEEC-CCCcchh-hHHHHHHHHHhcCC
Confidence 57789999999999999885321 1245888998887766554 4789999999 9999985 588999999986 5
Q ss_pred CCCCCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCC-eEEEEE
Q 022752 110 FQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEY 186 (292)
Q Consensus 110 ~~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~-~v~i~~ 186 (292)
+ ..+.++|||++.. +.++.+.+ ...+.||+|+.+++.|..+++. ..+++++++++. +.+.|. .+.+++
T Consensus 136 i----~~i~itTNG~lL~~~~~~L~~aG-ld~VnISLDsl~~e~~~~itr~---~~~~~vl~~I~~-a~~~G~~~vkin~ 206 (373)
T PLN02951 136 L----KTLAMTTNGITLSRKLPRLKEAG-LTSLNISLDTLVPAKFEFLTRR---KGHDRVLESIDT-AIELGYNPVKVNC 206 (373)
T ss_pred C----ceEEEeeCcchHHHHHHHHHhCC-CCeEEEeeccCCHHHHHHHhcC---CCHHHHHHHHHH-HHHcCCCcEEEEE
Confidence 2 3589999998643 45555554 3568899999999999988643 357999999954 555664 699999
Q ss_pred EEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcC----CCcHHHHHHHHHH---HH---h-cCCeEEE----
Q 022752 187 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR----TSSDDKVSSFQKI---LR---G-SYNIRTT---- 251 (292)
Q Consensus 187 vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~----~~~~e~l~~~~~~---l~---~-~~g~~v~---- 251 (292)
++++|.|+ +++.++++++++.++.+.++.|+|.+.. .+. .+..+-++.+.+. +. . ..|....
T Consensus 207 vv~~g~N~--~Ei~~li~~a~~~gi~vr~ie~mP~~~~-~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~a~~y~~~ 283 (373)
T PLN02951 207 VVMRGFND--DEICDFVELTRDKPINVRFIEFMPFDGN-VWNVKKLVPYAEMMDRIEQRFPSLKRLQDHPTDTAKNFRID 283 (373)
T ss_pred EecCCCCH--HHHHHHHHHHHhCCCeEEEEEcccCCCC-ccccccCCCHHHHHHHHHHhcCcccccCCCCCCCceEEEEC
Confidence 99999876 4799999999999988888888887522 221 1222333333322 11 0 0111121
Q ss_pred -------eecccccccccccccccccCcCcc
Q 022752 252 -------VRKQMGQDISGACGQLVVNLPDKI 275 (292)
Q Consensus 252 -------ir~~~g~~~~~~c~~~~~~~~~~~ 275 (292)
+....-+..|++|.+++.+.--++
T Consensus 284 ~~~g~ig~I~~~s~~FC~~CnRlRltadG~l 314 (373)
T PLN02951 284 GHCGSVSFITSMTEHFCAGCNRLRLLADGNL 314 (373)
T ss_pred CCCeEEEEEcCCcccccccCCeEEEccCCcE
Confidence 222233568999999999877665
No 33
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.93 E-value=5.3e-24 Score=195.61 Aligned_cols=175 Identities=23% Similarity=0.315 Sum_probs=139.2
Q ss_pred EEEEEcCCCCCcCCcCcCCCCC-----CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCC-
Q 022752 35 TLCISSQVGCKMGCNFCATGTM-----GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL- 108 (292)
Q Consensus 35 ~l~is~t~gCNl~C~yC~~~~~-----~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~- 108 (292)
.+.+++|.+||++|.||+.... .....++.+++.+.+..... .++..|.|+| ||||+++ .+.++++.+++.
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~-~gv~~V~ltG-GEPll~~-~l~~li~~i~~~~ 87 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVG-LGVRKVRLTG-GEPLLRK-DLVELVARLAALP 87 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHH-CCCCEEEEEC-ccccccC-CHHHHHHHHHhcC
Confidence 5667778999999999998641 12356889888877766554 3789999999 9999984 588999998874
Q ss_pred CCCCCCC-eEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-EEE
Q 022752 109 PFQVSPK-RITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFI 184 (292)
Q Consensus 109 g~~~~~~-~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v~i 184 (292)
+ . .+.++|||++.. +..+.+.+ ...+.||+|+.+++.++.+++. ..+++++++++ +.+.+.|.. +.+
T Consensus 88 g-----i~~v~itTNG~ll~~~~~~L~~~g-l~~v~ISld~~~~~~~~~i~~~--~~~~~~vl~~i-~~l~~~G~~~v~i 158 (334)
T TIGR02666 88 G-----IEDIALTTNGLLLARHAKDLKEAG-LKRVNVSLDSLDPERFAKITRR--GGRLEQVLAGI-DAALAAGLEPVKL 158 (334)
T ss_pred C-----CCeEEEEeCchhHHHHHHHHHHcC-CCeEEEecccCCHHHhheeCCC--CCCHHHHHHHH-HHHHHcCCCcEEE
Confidence 5 4 799999998643 34555544 3568899999999999888532 35899999999 556677776 999
Q ss_pred EEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCC
Q 022752 185 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 223 (292)
Q Consensus 185 ~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~ 223 (292)
++++++|.|+ +++.++++++.+.++.+.++.|+|.+.
T Consensus 159 n~vv~~g~n~--~ei~~l~~~~~~~gv~~~~ie~mp~~~ 195 (334)
T TIGR02666 159 NTVVMRGVND--DEIVDLAEFAKERGVTLRFIELMPLGE 195 (334)
T ss_pred EEEEeCCCCH--HHHHHHHHHHHhcCCeEEEEeccCCCC
Confidence 9999998766 579999999999999888888888753
No 34
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.93 E-value=4.7e-24 Score=180.74 Aligned_cols=179 Identities=17% Similarity=0.219 Sum_probs=135.6
Q ss_pred CCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCC---CcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCH
Q 022752 19 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY 95 (292)
Q Consensus 19 ~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~---~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~ 95 (292)
+|.+.|| ||....+++ |.+||++|.||+++... ....++++++++.+.+... .+..|.|+| ||||+++
T Consensus 7 ~~~~~~~----~g~~~~~~~--t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~--~~~~i~~sG-GEPll~~ 77 (191)
T TIGR02495 7 PFSMLDY----PGKLAFTIF--FQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQG--LIDGVVITG-GEPTLQA 77 (191)
T ss_pred ccccccC----CCCeEEEEE--cCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhcC--CCCeEEEEC-CcccCcH
Confidence 3888898 777665555 58999999999997432 2346889999988877532 367899999 9999996
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccH-HHHHHHHHH
Q 022752 96 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL-EKLMNALKE 173 (292)
Q Consensus 96 ~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~-~~vi~~l~~ 173 (292)
+ +.++++++++.| ..+.+.|||+..+ +.++++.+....+.+|+++. ++.+..+++.. ..+ +++++++ +
T Consensus 78 ~-l~~li~~~~~~g-----~~v~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~-~~~~~~~~g~~--~~~~~~~~~~i-~ 147 (191)
T TIGR02495 78 G-LPDFLRKVRELG-----FEVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAP-PEKYPELYGLE--KNGSNNILKSL-E 147 (191)
T ss_pred h-HHHHHHHHHHCC-----CeEEEEeCCCCHHHHHHHHhcCCCcEEEEeccCC-hHHHHHHHCCC--CchHHHHHHHH-H
Confidence 6 889999999987 6799999998654 34555543223467899985 55566665432 344 4899999 5
Q ss_pred HHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEec
Q 022752 174 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 218 (292)
Q Consensus 174 ~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~ 218 (292)
.+++.+..+.+++++++++++ .++++++++++++++ ...++||
T Consensus 148 ~l~~~gi~~~i~~~v~~~~~~-~~ei~~~~~~l~~~~-~~~~~~~ 190 (191)
T TIGR02495 148 ILLRSGIPFELRTTVHRGFLD-EEDLAEIATRIKENG-TYVLQPF 190 (191)
T ss_pred HHHHcCCCEEEEEEEeCCCCC-HHHHHHHHHHhccCC-cEEeecc
Confidence 677789999999999999888 679999999999887 3444444
No 35
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.92 E-value=1.3e-23 Score=185.52 Aligned_cols=212 Identities=20% Similarity=0.257 Sum_probs=160.1
Q ss_pred CCceEEEEEcCC-CCCcCCcCcCCCCCCC-----cCCCCHHHHHHHHHHhhcc-----CCcceEEEecCCccccCHHHHH
Q 022752 31 GPRSTLCISSQV-GCKMGCNFCATGTMGF-----KSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALV 99 (292)
Q Consensus 31 ~~r~~l~is~t~-gCNl~C~yC~~~~~~~-----~~~~~~eei~~~i~~~~~~-----~~~~~I~fsG~GEPll~~~~i~ 99 (292)
|.+..+-.+++. .||++|.||+.+.... ......+.+.+++.....+ ..+++++|+|.|||+|+ +.|.
T Consensus 20 G~slgi~~tP~~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy-~~L~ 98 (296)
T COG0731 20 GISLGIQMTPSKKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY-PNLG 98 (296)
T ss_pred ccccCCccccchhhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcccc-cCHH
Confidence 344445555666 8999999999964322 2345677777777776554 36899999999999996 6799
Q ss_pred HHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhC
Q 022752 100 EAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 179 (292)
Q Consensus 100 ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~ 179 (292)
++++.+|+.|. ..+.+.|||++++..+-+. ....+.+|+||++++.|+.+.++....+++++++.+..+.+...
T Consensus 99 elI~~~k~~g~----~~tflvTNgslpdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~ 172 (296)
T COG0731 99 ELIEEIKKRGK----KTTFLVTNGSLPDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYK 172 (296)
T ss_pred HHHHHHHhcCC----ceEEEEeCCChHHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCC
Confidence 99999999971 4899999999965332222 23567799999999999999999888999999999965544326
Q ss_pred CeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCc-----CCCcHHHHHHHHHHHHhcCCeEE
Q 022752 180 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQF-----RTSSDDKVSSFQKILRGSYNIRT 250 (292)
Q Consensus 180 ~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~-----~~~~~e~l~~~~~~l~~~~g~~v 250 (292)
....+++++++|+|++.+++++++++++..... +.+-.++-.+ ...+ ..+..+++..|.+.+....|+++
T Consensus 173 ~~~vir~tlvkg~N~~~e~~~~~a~ll~~~~Pd~velk~~~rpg-as~~~l~~~~~p~~e~~~~f~~~l~~~~~~~~ 248 (296)
T COG0731 173 GRTVIRTTLVKGINDDEEELEEYAELLERINPDFVELKTYMRPG-ASRYRLPRSNMPLHEEVLEFAKELGEELGYEI 248 (296)
T ss_pred CcEEEEEEEeccccCChHHHHHHHHHHHhcCCCeEEEecCccCC-hHhhccCccccchhHHHHHHHHHhhcccCeee
Confidence 789999999999999999999999999998765 6655444332 2222 25678888888888873335554
No 36
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.91 E-value=2.6e-22 Score=187.35 Aligned_cols=194 Identities=14% Similarity=0.161 Sum_probs=145.5
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCC--CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCC
Q 022752 34 STLCISSQVGCKMGCNFCATGTM--GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ 111 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~--~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~ 111 (292)
..+.+.+|.+||++|.||+++.. .....++.+++.+.+.+... .++..|.|+| ||||++++ +.++++++++.|
T Consensus 16 ~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~-~g~~~v~~~G-GEPll~~~-~~~il~~~~~~g-- 90 (378)
T PRK05301 16 LWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARA-LGALQLHFSG-GEPLLRKD-LEELVAHARELG-- 90 (378)
T ss_pred eEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHH-cCCcEEEEEC-CccCCchh-HHHHHHHHHHcC--
Confidence 77888889999999999998532 23456888887777766554 4678999999 99999855 889999999887
Q ss_pred CCCCeEEEEcCCchhh---HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEE
Q 022752 112 VSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 188 (292)
Q Consensus 112 ~~~~~i~l~TNG~~~~---~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl 188 (292)
..+.+.|||++.. ++++.+.+ ...+.||||+.+++.++.+++. .++++++++++ +.+++.+..+.+++++
T Consensus 91 ---~~~~i~TNG~ll~~~~~~~L~~~g-~~~v~iSldg~~~e~~d~irg~--~g~f~~~~~~i-~~l~~~g~~v~i~~vv 163 (378)
T PRK05301 91 ---LYTNLITSGVGLTEARLAALKDAG-LDHIQLSFQDSDPELNDRLAGT--KGAFAKKLAVA-RLVKAHGYPLTLNAVI 163 (378)
T ss_pred ---CcEEEECCCccCCHHHHHHHHHcC-CCEEEEEecCCCHHHHHHHcCC--CchHHHHHHHH-HHHHHCCCceEEEEEe
Confidence 6789999998643 33444433 3468899999999999887543 35899999999 5677889999999988
Q ss_pred eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCC---CCcCCCcHHHHHHHHHHH
Q 022752 189 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSV---SQFRTSSDDKVSSFQKIL 242 (292)
Q Consensus 189 ~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~---~~~~~~~~e~l~~~~~~l 242 (292)
.+. +.+++.++++++.++|+. +.+.+..+.+.. .....++.+++.++.+.+
T Consensus 164 ~~~---N~~~i~~~~~~~~~lgv~~i~~~~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 218 (378)
T PRK05301 164 HRH---NIDQIPRIIELAVELGADRLELANTQYYGWALLNRAALMPTREQLERAERIV 218 (378)
T ss_pred ecC---CHHHHHHHHHHHHHcCCCEEEEecccccChhhhcccccCCCHHHHHHHHHHH
Confidence 654 667899999999999986 666655554311 112345666766654443
No 37
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.90 E-value=6.3e-22 Score=183.51 Aligned_cols=193 Identities=16% Similarity=0.190 Sum_probs=141.1
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCC--CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCC
Q 022752 34 STLCISSQVGCKMGCNFCATGTM--GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ 111 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~--~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~ 111 (292)
..+.+.+|.+||++|.||+++.. .....++.+++.+.+.++.. .++..|.|+| ||||+++ .+.++++++++.|
T Consensus 7 ~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~-~g~~~v~~~G-GEPll~~-~~~~ii~~~~~~g-- 81 (358)
T TIGR02109 7 LWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAE-LGVLQLHFSG-GEPLARP-DLVELVAHARRLG-- 81 (358)
T ss_pred cEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHh-cCCcEEEEeC-ccccccc-cHHHHHHHHHHcC--
Confidence 66777889999999999998532 12356888887776766554 3678999999 9999985 5889999999987
Q ss_pred CCCCeEEEEcCCchhh---HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEE
Q 022752 112 VSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 188 (292)
Q Consensus 112 ~~~~~i~l~TNG~~~~---~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl 188 (292)
..+.+.|||++.. +.++.+.+ ...+.||||+.+++.++.+++. .++++++++++ +.+++.+..+.+++++
T Consensus 82 ---~~~~l~TNG~ll~~e~~~~L~~~g-~~~v~iSldg~~~e~~d~~rg~--~g~f~~v~~~i-~~l~~~g~~v~v~~vv 154 (358)
T TIGR02109 82 ---LYTNLITSGVGLTEARLDALADAG-LDHVQLSFQGVDEALADRIAGY--KNAFEQKLAMA-RAVKAAGLPLTLNFVI 154 (358)
T ss_pred ---CeEEEEeCCccCCHHHHHHHHhCC-CCEEEEeCcCCCHHHHHHhcCC--ccHHHHHHHHH-HHHHhCCCceEEEEEe
Confidence 6789999998643 33444433 3458899999999999887532 35799999999 5677788999999988
Q ss_pred eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCC---CCcCCCcHHHHHHHHHH
Q 022752 189 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSV---SQFRTSSDDKVSSFQKI 241 (292)
Q Consensus 189 ~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~---~~~~~~~~e~l~~~~~~ 241 (292)
.+. +.+++.++++++.++|+. +.+.+..+.+.. .....++.+++.++.+.
T Consensus 155 ~~~---N~~~l~~~~~~~~~lg~~~i~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~ 208 (358)
T TIGR02109 155 HRH---NIDQIPEIIELAIELGADRVELATTQYYGWALLNRAALMPTRAQLEEATRI 208 (358)
T ss_pred ccC---CHHHHHHHHHHHHHcCCCEEEEEeeeccCchhcchhhcCCCHHHHHHHHHH
Confidence 754 667899999999999876 555433332211 11234565665554443
No 38
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.90 E-value=6.5e-22 Score=180.23 Aligned_cols=171 Identities=18% Similarity=0.262 Sum_probs=132.7
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCCC---cCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCC
Q 022752 34 STLCISSQVGCKMGCNFCATGTMGF---KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 110 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~~---~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~ 110 (292)
.++.+.+|.+||++|.||+.+.... ...++.+++++.+.+. ++..|+|+| ||||+++ .+.++++++++.+
T Consensus 28 l~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~e~----g~~~V~i~G-GEPLL~p-dl~eiv~~~~~~g- 100 (318)
T TIGR03470 28 LVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVDEC----GAPVVSIPG-GEPLLHP-EIDEIVRGLVARK- 100 (318)
T ss_pred CEEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHHHc----CCCEEEEeC-ccccccc-cHHHHHHHHHHcC-
Confidence 6788888999999999999864322 3468888888776642 567899999 9999995 4899999999887
Q ss_pred CCCCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEE
Q 022752 111 QVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 188 (292)
Q Consensus 111 ~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl 188 (292)
..+.+.|||++.. +.++... ....+.||+|+.. +.|.... ...+++++++++++ .+++.|..+.+++++
T Consensus 101 ----~~v~l~TNG~ll~~~~~~l~~~-~~~~i~VSLDG~~-e~hd~~~--~~~g~f~~~l~~I~-~l~~~G~~v~v~~tv 171 (318)
T TIGR03470 101 ----KFVYLCTNALLLEKKLDKFEPS-PYLTFSVHLDGLR-EHHDASV--CREGVFDRAVEAIR-EAKARGFRVTTNTTL 171 (318)
T ss_pred ----CeEEEecCceehHHHHHHHHhC-CCcEEEEEEecCc-hhhchhh--cCCCcHHHHHHHHH-HHHHCCCcEEEEEEE
Confidence 6899999998753 3334333 2467889999975 5565553 23468999999994 566778889999888
Q ss_pred eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 189 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 189 ~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
+.+ ++.+++.++++++.++|+. +.+.|..+.+
T Consensus 172 ~~~--~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 172 FND--TDPEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred eCC--CCHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 765 4678999999999999985 7787776653
No 39
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.88 E-value=4e-21 Score=168.31 Aligned_cols=214 Identities=15% Similarity=0.270 Sum_probs=160.5
Q ss_pred CCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCc------CCCCHHHHHHHHHHhhccCC-cceEEEecCCccc
Q 022752 20 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFK------SNLSSGEIVEQLVHASRLSN-IRNVVFMGMGEPL 92 (292)
Q Consensus 20 ~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~------~~~~~eei~~~i~~~~~~~~-~~~I~fsG~GEPl 92 (292)
||..|- ++.++-+-.+.|||++|.||.......+ ...+++.+++++....++.+ --...+-|+|||+
T Consensus 99 FGlIdR------GtNviqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~ 172 (414)
T COG2100 99 FGLIDR------GTNVIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPL 172 (414)
T ss_pred eeEEec------CceEEEecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCc
Confidence 777776 7789999889999999999987443332 23578999999988766543 3488999999999
Q ss_pred cCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh---HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHH
Q 022752 93 NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 168 (292)
Q Consensus 93 l~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~---~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi 168 (292)
++ ++|.++++.+++. + --.++++|||+++. +.+|.+++ ...+++|++|.+++..+.+++. +.++++.++
T Consensus 173 lY-P~l~~lVqalk~~~~----v~vVSmQTng~~L~~~lv~eLeeAG-LdRiNlSv~aLDpk~Ak~L~G~-~dYdv~kvl 245 (414)
T COG2100 173 LY-PHLVDLVQALKEHKG----VEVVSMQTNGVLLSKKLVDELEEAG-LDRINLSVDALDPKLAKMLAGR-KDYDVKKVL 245 (414)
T ss_pred cc-hhHHHHHHHHhcCCC----ceEEEEeeCceeccHHHHHHHHHhC-CceEEeecccCCHHHHHHhcCc-cccCHHHHH
Confidence 96 7899999999998 4 25799999998654 45666665 3678999999999999988754 468899999
Q ss_pred HHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCc-----EEEEEecCCCCCC---CCcCCCcHHHHHHHHH
Q 022752 169 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-----VVNLIPFNPIGSV---SQFRTSSDDKVSSFQK 240 (292)
Q Consensus 169 ~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~-----~v~l~p~~p~~~~---~~~~~~~~e~l~~~~~ 240 (292)
+-+ +++..+++.+.+.-+++||+||. ++.++++|..++|. .+-++-|.|...+ ...++.+.++.-+..+
T Consensus 246 e~a-E~i~~a~idvlIaPv~lPG~ND~--E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLr 322 (414)
T COG2100 246 EVA-EYIANAGIDVLIAPVWLPGVNDD--EMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLR 322 (414)
T ss_pred HHH-HHHHhCCCCEEEeeeecCCcChH--HHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHH
Confidence 999 56667899999999999999885 68999999998753 1334444443211 1234456666554444
Q ss_pred HHHhcCCeE
Q 022752 241 ILRGSYNIR 249 (292)
Q Consensus 241 ~l~~~~g~~ 249 (292)
.++.++|++
T Consensus 323 elEketg~k 331 (414)
T COG2100 323 ELEKETGVK 331 (414)
T ss_pred HHHHHhCCC
Confidence 455467876
No 40
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.86 E-value=6e-20 Score=167.19 Aligned_cols=219 Identities=20% Similarity=0.363 Sum_probs=139.7
Q ss_pred CCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcC-CCCHHHHHHHHHHhhccCCcceE
Q 022752 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS-NLSSGEIVEQLVHASRLSNIRNV 83 (292)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~-~~~~eei~~~i~~~~~~~~~~~I 83 (292)
|+..+|.++.+|+. | ++++ +|.+||++|+||++......+ .++.+++.+.+.......++..|
T Consensus 83 ~~~~v~gl~hkY~~--------------r-~l~~-~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~~V 146 (321)
T TIGR03821 83 DANPVPGLLHKYHG--------------R-VLLI-VTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQHPEINEV 146 (321)
T ss_pred CCCcCCeeeeecCC--------------E-EEEE-eCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 45556666666655 2 3444 579999999999996543333 34444443334444444578999
Q ss_pred EEecCCccccCHHH-HHHHHHHHhCCCCCCCCCeEE-------EEcCCchhhHHHHhhhCCCceE-EEEecCCChHHHhh
Q 022752 84 VFMGMGEPLNNYAA-LVEAVRIMTGLPFQVSPKRIT-------VSTVGIVHAINKFHSDLPGLNL-AVSLHAPVQDVRCQ 154 (292)
Q Consensus 84 ~fsG~GEPll~~~~-i~ell~~~~~~g~~~~~~~i~-------l~TNG~~~~~~~l~~~~~~~~l-~iSld~~~~~~~~~ 154 (292)
.||| ||||++++. +.++++.+..... + ..+. +.||-+..++.+.+.......+ .+|++++. +.+.
T Consensus 147 vltG-GEPL~~~d~~L~~ll~~l~~i~~-~--~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~-Ei~d- 220 (321)
T TIGR03821 147 ILSG-GDPLMAKDHRLDWLLNLLEQIPH-L--KRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHAN-EIDA- 220 (321)
T ss_pred EEeC-cccccCCchHHHHHHHHHHhCCC-C--cEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChH-hCcH-
Confidence 9999 999998653 7778777766420 1 2333 3444222233232322211223 36888874 4432
Q ss_pred hcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHH
Q 022752 155 IMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDD 233 (292)
Q Consensus 155 i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e 233 (292)
.+.+++ +.+++.|..+.+++++++|+||+.+++.++.+.+.++|+. +.+..+.|.+....+. .+.+
T Consensus 221 -----------~~~~ai-~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f~-v~~~ 287 (321)
T TIGR03821 221 -----------EVADAL-AKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHFD-VDDE 287 (321)
T ss_pred -----------HHHHHH-HHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCcccccCCCCCccccc-CCHH
Confidence 355677 4567789999999999999999999999999999999987 7777788886544454 4555
Q ss_pred HHHHHHHHHHh---cCCeEEEeeccccc
Q 022752 234 KVSSFQKILRG---SYNIRTTVRKQMGQ 258 (292)
Q Consensus 234 ~l~~~~~~l~~---~~g~~v~ir~~~g~ 258 (292)
+..++.+.+++ ++.++..++...|.
T Consensus 288 ~~~~i~~~l~~~~sG~~~P~~v~d~pg~ 315 (321)
T TIGR03821 288 RARALMAELLARLPGYLVPRLVREIPGE 315 (321)
T ss_pred HHHHHHHHHHHhCCCCccceeEEEcCCC
Confidence 54444444331 56667778776553
No 41
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.86 E-value=8.2e-20 Score=170.02 Aligned_cols=178 Identities=14% Similarity=0.216 Sum_probs=131.8
Q ss_pred cCCCCHHHHHHHHHHhhccC--CcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEE-cCCchh-h---HHHH
Q 022752 59 KSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVS-TVGIVH-A---INKF 131 (292)
Q Consensus 59 ~~~~~~eei~~~i~~~~~~~--~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~-TNG~~~-~---~~~l 131 (292)
+..++++++++.+.+...+. ....|+|+|.|||++ ++++.++++.+++.+ .++.+. |||... . +.++
T Consensus 51 g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~-~~~l~eLl~~lk~~g-----i~taI~~TnG~~l~~~e~~~~L 124 (404)
T TIGR03278 51 GDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSC-YPELEELTKGLSDLG-----LPIHLGYTSGKGFDDPEIAEFL 124 (404)
T ss_pred CCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCccccc-CHHHHHHHHHHHhCC-----CCEEEeCCCCcccCCHHHHHHH
Confidence 35678999999998865432 457999999345555 588999999999987 668886 998532 2 4455
Q ss_pred hhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCc
Q 022752 132 HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 211 (292)
Q Consensus 132 ~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~ 211 (292)
++.+ ..-+.+|+|+.+++.|+++++.. ..+.++++++.+++ +..+.++++++||+||+++ +.++++++.++++
T Consensus 125 ~~~g-ld~v~iSvka~dpe~h~kl~G~~---~a~~ILe~L~~L~e--~~~v~~~ivlIPGiND~ee-l~~ti~~L~~lg~ 197 (404)
T TIGR03278 125 IDNG-VREVSFTVFATDPELRREWMKDP---TPEASLQCLRRFCE--SCEVHAASVIIPGVNDGDV-LWKTCADLESWGA 197 (404)
T ss_pred HHcC-CCEEEEecccCCHHHHHHHhCCC---CHHHHHHHHHHHHh--cCCEEEEEEEeCCccCcHH-HHHHHHHHHHCCC
Confidence 5543 23467999999999999986532 23899999966554 4689999999999999864 4699999999988
Q ss_pred E-EEEEecCCCCC----------CCCcCCCcHHHHHHH-HHHHHhcCCeEE
Q 022752 212 V-VNLIPFNPIGS----------VSQFRTSSDDKVSSF-QKILRGSYNIRT 250 (292)
Q Consensus 212 ~-v~l~p~~p~~~----------~~~~~~~~~e~l~~~-~~~l~~~~g~~v 250 (292)
. +.+.+|++.+. ..++.+++.+++..+ +++.+ ++++++
T Consensus 198 ~~V~L~~y~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~-~~~i~~ 247 (404)
T TIGR03278 198 KALILMRFANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHK-EFPIRV 247 (404)
T ss_pred CEEEEEecccccccccccCCcCcccCCCCCCHHHHHHHHHHHHH-HhCCcc
Confidence 6 99999985431 122556788887777 55555 666543
No 42
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.85 E-value=1.7e-19 Score=167.86 Aligned_cols=181 Identities=17% Similarity=0.269 Sum_probs=121.3
Q ss_pred eEEEEEcC-CCCCcCCcCcCCCCCCCc------CCCCHHHHHHHHHH-hhcc-CCcceEEEecCCccccCH-HHHHHHHH
Q 022752 34 STLCISSQ-VGCKMGCNFCATGTMGFK------SNLSSGEIVEQLVH-ASRL-SNIRNVVFMGMGEPLNNY-AALVEAVR 103 (292)
Q Consensus 34 ~~l~is~t-~gCNl~C~yC~~~~~~~~------~~~~~eei~~~i~~-~~~~-~~~~~I~fsG~GEPll~~-~~i~ell~ 103 (292)
+.+++-++ .+||++|.||+++..... ..|+ .++++.+.+ +.+. .+...|.|+| |||||++ +.+.++++
T Consensus 4 ~~~~~~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~-~~~~~~~i~~~~~~~~~~~~i~~~G-GEPll~~~~~~~~~~~ 81 (370)
T PRK13758 4 LSLLIKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMR-DEVLESMVKRVLNEAEGHCSFAFQG-GEPTLAGLEFFEELME 81 (370)
T ss_pred eEEEEecCCCCcCCCCcccCCcCccccccccccCCCC-HHHHHHHHHHHHhccCCceEEEEEC-CccccCChHHHHHHHH
Confidence 34445444 799999999998642211 2345 444544433 3322 2345799999 9999984 66778999
Q ss_pred HHhCCCCCCCCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCc-ccCccHHHHHHHHHHHHHhhCC
Q 022752 104 IMTGLPFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPA-ARAFPLEKLMNALKEYQKNSQQ 180 (292)
Q Consensus 104 ~~~~~g~~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~-~~~~~~~~vi~~l~~~~~~~~~ 180 (292)
++++.++.-....++|+|||++.. ..+++.+. .+.+.||||+. ++.|..+++. ++.+++++++++++ .+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~-~~~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~-~l~~~~~ 158 (370)
T PRK13758 82 LQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSEN-KFLVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAE-LFKKYKV 158 (370)
T ss_pred HHHHhccCCCeEEEEEEecCEecCHHHHHHHHHc-CceEEEeecCC-HHHhccccCCCCCCccHHHHHHHHH-HHHHhCC
Confidence 998865211113469999998743 33333333 35788999998 5666665432 24578999999995 5566788
Q ss_pred eEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEe-cCCCC
Q 022752 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIP-FNPIG 222 (292)
Q Consensus 181 ~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p-~~p~~ 222 (292)
.+.+++++.+. +.+++.++++++.++++. +.+.+ +.|.+
T Consensus 159 ~~~i~~~v~~~---n~~~l~~i~~~~~~~g~~~~~~~~~~~p~~ 199 (370)
T PRK13758 159 EFNILCVVTSN---TARHVNKIYKYFKEKDFKFLQFINCLDPLY 199 (370)
T ss_pred CceEEEEeccc---cccCHHHHHHHHHHcCCCeEeeeeccCccc
Confidence 88998888765 456789999999998876 65554 34543
No 43
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=156.57 Aligned_cols=215 Identities=16% Similarity=0.276 Sum_probs=163.7
Q ss_pred ecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCC---CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccc
Q 022752 16 YDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL 92 (292)
Q Consensus 16 ~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~---~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPl 92 (292)
+=+|+..+=|+-.|.-.+-|+|+ .||||+|.||+||.. +.+..++++++.+.+++..+ .|..+|+|.| |||+
T Consensus 103 ~vas~flH~GEE~~LvpSgTVFF---sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~-~GakNvN~Vg-g~Pt 177 (335)
T COG1313 103 YVASEFLHFGEEPPLVPSGTVFF---SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRR-HGAKNVNFVG-GDPT 177 (335)
T ss_pred eeeccccccCcCCcccCCceEEe---cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHH-hcCcceeecC-CCCC
Confidence 33455555565555556889999 799999999999854 34677999999988887665 4789999999 9999
Q ss_pred cCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchh-hHHHHhhhCCCceEEE-EecCCChHHHhhhcCcccCccHHHHHHH
Q 022752 93 NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH-AINKFHSDLPGLNLAV-SLHAPVQDVRCQIMPAARAFPLEKLMNA 170 (292)
Q Consensus 93 l~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~-~~~~l~~~~~~~~l~i-Sld~~~~~~~~~i~~~~~~~~~~~vi~~ 170 (292)
-|.++|++.++++.+. ..+..+||++.. +..++++. .+|+.+ +++-.+++...++... ..-++-+-++
T Consensus 178 p~lp~Ile~l~~~~~~------iPvvwNSnmY~s~E~l~lL~g--vVDiyL~DfKYgNdeca~kySkv--p~Y~eVv~rn 247 (335)
T COG1313 178 PHLPFILEALRYASEN------IPVVWNSNMYMSEETLKLLDG--VVDIYLPDFKYGNDECAEKYSKV--PNYWEVVTRN 247 (335)
T ss_pred CchHHHHHHHHHHhcC------CCEEEecCCccCHHHHHHhhc--cceeeecccccCCHHHHHHhhcC--CchHHHHHHH
Confidence 9999999999999886 569999999763 34455543 488887 9998899888777533 3456777788
Q ss_pred HHHHHHhhCCeEEEEEEEeCCCCChHHH-HHHHHHHHhhC-C--cEEEEE-ecCCCCCCCCc----CCCcHHHHHHHHHH
Q 022752 171 LKEYQKNSQQKIFIEYIMLDGVNDEEQH-AHQLGKLLETF-Q--VVVNLI-PFNPIGSVSQF----RTSSDDKVSSFQKI 241 (292)
Q Consensus 171 l~~~~~~~~~~v~i~~vl~~g~nd~~~~-l~~l~~~l~~~-~--~~v~l~-p~~p~~~~~~~----~~~~~e~l~~~~~~ 241 (292)
+....+..| .+.++..++|| ..+. -..+++|+++. + +.++++ +|+|...+..| ..++.++++++.++
T Consensus 248 ~~~~~~~~g-~~iiRHLVlPg---hlecCTkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~ 323 (335)
T COG1313 248 ILEAKEQVG-GLIIRHLVLPG---HLECCTKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEY 323 (335)
T ss_pred HHHHHHhcC-ceEEEEEecCC---chhhccHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhhcccCCHHHHHHHHHH
Confidence 855444433 68999999998 3344 56788888874 3 447776 68897655555 35789999999999
Q ss_pred HHhcCCeEE
Q 022752 242 LRGSYNIRT 250 (292)
Q Consensus 242 l~~~~g~~v 250 (292)
++ ++|+.-
T Consensus 324 a~-~~gl~~ 331 (335)
T COG1313 324 AE-KLGLTN 331 (335)
T ss_pred HH-HcCCce
Confidence 99 788763
No 44
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.83 E-value=2.1e-18 Score=157.35 Aligned_cols=205 Identities=20% Similarity=0.223 Sum_probs=142.4
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCCC---CcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccC-HHHHHHHHHHHhC
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN-YAALVEAVRIMTG 107 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~~---~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~-~~~i~ell~~~~~ 107 (292)
.|+.+.+ |.+||++|+||++.... ....++.+++.+.+.......++..|.||| ||||+. .+.|.++++.+++
T Consensus 88 ~rvll~v--T~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSG-GDPl~~~~~~L~~ll~~l~~ 164 (321)
T TIGR03822 88 DRVLLKP--VHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTG-GDPLVLSPRRLGDIMARLAA 164 (321)
T ss_pred CEEEEEe--cCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeC-CCcccCCHHHHHHHHHHHHh
Confidence 4555555 79999999999986531 123456677666666555445788999999 999986 4679999999998
Q ss_pred CCCCCCCCeEEEEcCC-----ch--hh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhC
Q 022752 108 LPFQVSPKRITVSTVG-----IV--HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 179 (292)
Q Consensus 108 ~g~~~~~~~i~l~TNG-----~~--~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~ 179 (292)
.+ +...+.+.|++ .. .+ +..+.+.+ ..+.|++|+.++.. + .+++++++ +.+++.|
T Consensus 165 i~---~v~~iri~Tr~~v~~p~rit~ell~~L~~~g--~~v~i~l~~~h~~e---l--------~~~~~~ai-~~L~~~G 227 (321)
T TIGR03822 165 ID---HVKIVRFHTRVPVADPARVTPALIAALKTSG--KTVYVALHANHARE---L--------TAEARAAC-ARLIDAG 227 (321)
T ss_pred CC---CccEEEEeCCCcccChhhcCHHHHHHHHHcC--CcEEEEecCCChhh---c--------CHHHHHHH-HHHHHcC
Confidence 74 11246777743 22 22 23333333 45678998865431 1 26788888 5567889
Q ss_pred CeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHh---cCCeEEEeecc
Q 022752 180 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG---SYNIRTTVRKQ 255 (292)
Q Consensus 180 ~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~---~~g~~v~ir~~ 255 (292)
..+.+++++++|+||+.+++.++.+++.++|+. +.+..+.|.+....+. .+.++..++.+.+.+ ++.++..++..
T Consensus 228 i~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~-~~~~~~~~i~~~l~~~~~g~~~p~~v~~~ 306 (321)
T TIGR03822 228 IPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFR-VTIEEGQALVRALRGRISGLAQPTYVLDI 306 (321)
T ss_pred CEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCccccc-CcHHHHHHHHHHHHHhCCCCcceeEEEeC
Confidence 999999999999999999999999999999987 7777888875444443 555555555444441 45556666665
Q ss_pred cc
Q 022752 256 MG 257 (292)
Q Consensus 256 ~g 257 (292)
.|
T Consensus 307 ~~ 308 (321)
T TIGR03822 307 PG 308 (321)
T ss_pred CC
Confidence 54
No 45
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.82 E-value=8.1e-19 Score=165.48 Aligned_cols=183 Identities=12% Similarity=0.141 Sum_probs=123.6
Q ss_pred CCCceEEEEEcC-CCCCcCCcCcCCCCCC-----C-cCCCCHHHHHHHHHHhhccCCc--ceEEEecCCccccCHH-HHH
Q 022752 30 GGPRSTLCISSQ-VGCKMGCNFCATGTMG-----F-KSNLSSGEIVEQLVHASRLSNI--RNVVFMGMGEPLNNYA-ALV 99 (292)
Q Consensus 30 ~~~r~~l~is~t-~gCNl~C~yC~~~~~~-----~-~~~~~~eei~~~i~~~~~~~~~--~~I~fsG~GEPll~~~-~i~ 99 (292)
+...+.+.+-++ ..||++|.||+..... . ...|+.+.+.+.+++.....+. ..++|+| |||||+++ ++.
T Consensus 9 ~~~p~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~G-GEPlL~~~~~~~ 87 (412)
T PRK13745 9 FAKPLYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHG-GETLMRPLSFYK 87 (412)
T ss_pred cCcceEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEc-cccCCCcHHHHH
Confidence 444477777766 5899999999974221 1 2347776666555554432233 3577899 99999854 344
Q ss_pred HHHHHHhCCCCCCCCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCc-ccCccHHHHHHHHHHHHH
Q 022752 100 EAVRIMTGLPFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPA-ARAFPLEKLMNALKEYQK 176 (292)
Q Consensus 100 ell~~~~~~g~~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~-~~~~~~~~vi~~l~~~~~ 176 (292)
++++++++..- -..+.++|+|||++.. +.+++... .+.+.||||++ ++.|+.+++. ++.++++++++++ +.+.
T Consensus 88 ~~~~~~~~~~~-~~~i~~~i~TNG~ll~~e~~~~l~~~-~~~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i-~~l~ 163 (412)
T PRK13745 88 KALELQKKYAR-GRQIDNCIQTNGTLLTDEWCEFFREN-NFLVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGI-NLLK 163 (412)
T ss_pred HHHHHHHHHcC-CCceEEEEeecCEeCCHHHHHHHHHc-CeEEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHH-HHHH
Confidence 55555432100 0126789999998753 33333333 36788999997 5666665432 2357999999999 4566
Q ss_pred hhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCC
Q 022752 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNP 220 (292)
Q Consensus 177 ~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p 220 (292)
+.+..+.+.+++.+. +.+++.++.+++.++|+. +.+.|+.|
T Consensus 164 ~~gi~~~i~~vv~~~---n~~~~~e~~~~~~~lg~~~~~~~p~~~ 205 (412)
T PRK13745 164 KHGVEWNAMAVVNDF---NADYPLDFYHFFKELDCHYIQFAPIVE 205 (412)
T ss_pred HcCCCEEEEEEEcCC---ccccHHHHHHHHHHcCCCeEEEEeccC
Confidence 788889998888765 456788999999999987 88888766
No 46
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.82 E-value=2.1e-18 Score=157.81 Aligned_cols=207 Identities=18% Similarity=0.312 Sum_probs=133.0
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCCCCcCCC-CHHHHHHHHHHhhccCCcceEEEecCCccccCHH-HHHHHHHHHhCCC
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTMGFKSNL-SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYA-ALVEAVRIMTGLP 109 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~-~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~-~i~ell~~~~~~g 109 (292)
.+..+. +|.|||++|+||++......... ..+++.+.+.......++..|.||| ||||+..+ .+.++++.+++.+
T Consensus 113 ~rvll~--~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsG-GDPLl~~d~~L~~ll~~L~~i~ 189 (331)
T TIGR00238 113 NRALFL--VKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISG-GDPLMAKDHELEWLLKRLEEIP 189 (331)
T ss_pred CcEEEE--eCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEEC-CccccCCHHHHHHHHHHHHhcC
Confidence 444444 47999999999998654332222 2455554444444445788999999 99999754 4889999998762
Q ss_pred CCCCCCeEEEEcCCchhh-----HHHHhhhCCCceE-EEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEE
Q 022752 110 FQVSPKRITVSTVGIVHA-----INKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183 (292)
Q Consensus 110 ~~~~~~~i~l~TNG~~~~-----~~~l~~~~~~~~l-~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~ 183 (292)
.+....+...|+++++. +.+++... ...+ .++.+...++. .+.+.+++ +.+.+.|..+.
T Consensus 190 -~~~~IRi~tr~~~~~P~rit~el~~~L~~~-~~~~~~vsh~nh~~Ei------------~~~~~~ai-~~L~~aGi~v~ 254 (331)
T TIGR00238 190 -HLVRLRIGTRLPVVIPQRITDELCELLASF-ELQLMLVTHINHCNEI------------TEEFAEAM-KKLRTVNVTLL 254 (331)
T ss_pred -CccEEEeecCCCccCchhcCHHHHHHHHhc-CCcEEEEccCCChHhC------------CHHHHHHH-HHHHHcCCEEE
Confidence 12224455556665432 22333332 2333 34543322222 14567888 45677899999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHH-h--cCCeEEEeecccc
Q 022752 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILR-G--SYNIRTTVRKQMG 257 (292)
Q Consensus 184 i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~-~--~~g~~v~ir~~~g 257 (292)
+++++++|+||+.+.+.++.+.+..+|+. +++..+.|.+....|.. +.++..++.+.++ + ++.++..++...|
T Consensus 255 ~qtvLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f~~-~~~~~~~i~~~l~~~~sG~~~P~~v~~~~g 331 (331)
T TIGR00238 255 NQSVLLRGVNDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHFLV-PDAEAAQIVKELARLTSGYLVPKFAVEIMG 331 (331)
T ss_pred eecceECCcCCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcccccC-CHHHHHHHHHHHHhcCCCCcceeEEecCCC
Confidence 99999999999999999999999999987 77778888765556654 4444444433333 1 4556667776543
No 47
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.80 E-value=3.7e-18 Score=157.87 Aligned_cols=174 Identities=15% Similarity=0.201 Sum_probs=118.0
Q ss_pred CCC-CCcCCcCcCCCCCCCcC-CCCHHHHHHHHHH-hhccCCc--ceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCC
Q 022752 41 QVG-CKMGCNFCATGTMGFKS-NLSSGEIVEQLVH-ASRLSNI--RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPK 115 (292)
Q Consensus 41 t~g-CNl~C~yC~~~~~~~~~-~~~~eei~~~i~~-~~~~~~~--~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~ 115 (292)
+.. ||++|.||+........ .|+ +++++.+.+ ....... -.|+|.| |||||....+.+.+..+.++.-.-...
T Consensus 14 t~~~CNL~C~YC~~~~~~~~~~~Ms-~etle~~i~~~~~~~~~~~v~~~w~G-GEPlL~~~~f~~~~~~l~~k~~~~~~i 91 (378)
T COG0641 14 TGFECNLDCKYCFYLEKESLQRIMS-DETLEEYVRQYIAASNGDKVTFTWQG-GEPLLAGLDFYRKAVALQQKYANGKTI 91 (378)
T ss_pred ccCccCCCCCeeCcccCCCCCCCCC-HHHHHHHHHHHHhhCCCCeeEEEEEC-CccccchHHHHHHHHHHHHHHhcCCee
Confidence 344 99999999997554432 355 444444433 3332233 3599999 999999555555555443331111236
Q ss_pred eEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcC-cccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCC
Q 022752 116 RITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMP-AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 192 (292)
Q Consensus 116 ~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~-~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~ 192 (292)
..+++|||++.. +.+++... .+.|.||||++ ++.|+++++ .+++++++++++++ +++++++..+.+.+++.+
T Consensus 92 ~~siqTNg~LL~~e~~e~l~~~-~~~IgISiDGp-~eihD~~R~~~~GkgTfd~i~~~i-~~L~~~~v~~~~~~vv~~-- 166 (378)
T COG0641 92 SNALQTNGTLLNDEWAEFLAEH-DFLIGISIDGP-EEIHDKYRVTKSGKGTFDRVMKGL-ELLQAHGVDFNTLTVVNR-- 166 (378)
T ss_pred EEEEEEcccccCHHHHHHHHhc-CceEEEeccCc-hHhccccccCCCCCccHHHHHHHH-HHHHHcCCcEEEEEEEch--
Confidence 677999998764 45555554 35788999998 666666542 25678999999999 567778888888888654
Q ss_pred CChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 193 NDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 193 nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
++.++..++.+++...+.. +.++|..+..
T Consensus 167 -~n~~~~~ei~~~l~~~g~~~i~fip~~~~~ 196 (378)
T COG0641 167 -QNVLHPEEIYHFLKSEGSKFIQFIPLVESD 196 (378)
T ss_pred -hHhhCHHHHHHHHHHcccceEEEEecccCC
Confidence 4677889999999888854 7777765543
No 48
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.79 E-value=3e-17 Score=150.82 Aligned_cols=176 Identities=22% Similarity=0.299 Sum_probs=133.9
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCCCC-cCCCCHHHHHHHHHHhhccCC-cceEEEecCCccccCHHHHHHHHHHHhCC-
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTMGF-KSNLSSGEIVEQLVHASRLSN-IRNVVFMGMGEPLNNYAALVEAVRIMTGL- 108 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~~~-~~~~~~eei~~~i~~~~~~~~-~~~I~fsG~GEPll~~~~i~ell~~~~~~- 108 (292)
...++.+++|..||++|.||+.+.... ...++.++..+.+.+.... + ...+.|+| |||+++ +.+.++++++++.
T Consensus 17 ~p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~-g~~~~v~~~g-GEPll~-~d~~ei~~~~~~~~ 93 (347)
T COG0535 17 PPLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAEL-GEIPVVIFTG-GEPLLR-PDLLEIVEYARKKG 93 (347)
T ss_pred CCcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHc-CCeeEEEEeC-CCcccc-ccHHHHHHHHhhcC
Confidence 457888888999999999999976543 4667788877555555443 4 78899999 999999 6789999999976
Q ss_pred CCCCCCCeEEEEcCCchh--h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEE
Q 022752 109 PFQVSPKRITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 185 (292)
Q Consensus 109 g~~~~~~~i~l~TNG~~~--~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~ 185 (292)
+ ..+++.|||++. + ++++.+.+ ...+.||+|+.+++.|..+.+ ..+.++.++++++ .+.+.+..+.++
T Consensus 94 ~-----~~~~~~TnG~~~~~~~~~~l~~~g-~~~v~iSid~~~~e~hd~~rg--~~g~~~~~~~~i~-~~~~~g~~~~~~ 164 (347)
T COG0535 94 G-----IRVSLSTNGTLLTEEVLEKLKEAG-LDYVSISLDGLDPETHDPIRG--VKGVFKRAVEAIK-NLKEAGILVVIN 164 (347)
T ss_pred C-----eEEEEeCCCccCCHHHHHHHHhcC-CcEEEEEecCCChhhhhhhcC--CCcHHHHHHHHHH-HHHHcCCeeeEE
Confidence 5 789999999443 2 33444433 456889999999998777753 2478999999995 455777777777
Q ss_pred EEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 186 YIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 186 ~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
+++... +.+++.++++++..+++. +.+.++.+.+
T Consensus 165 ~~v~~~---n~~~l~~~~~~~~~~g~~~~~~~~~~~~g 199 (347)
T COG0535 165 TTVTKI---NYDELPEIADLAAELGVDELNVFPLIPVG 199 (347)
T ss_pred EEEecC---cHHHHHHHHHHHHHcCCCEEEEEEEeecc
Confidence 776643 557889999999998865 6677777765
No 49
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.78 E-value=8.5e-18 Score=142.97 Aligned_cols=180 Identities=16% Similarity=0.208 Sum_probs=130.3
Q ss_pred EEEEcCCCCCcCCcCcCCCCCC-CcCCCCHHHHHHHHHHhhcc---C-CcceEEEecCCccccCHH-HHHHHHHHHhCCC
Q 022752 36 LCISSQVGCKMGCNFCATGTMG-FKSNLSSGEIVEQLVHASRL---S-NIRNVVFMGMGEPLNNYA-ALVEAVRIMTGLP 109 (292)
Q Consensus 36 l~is~t~gCNl~C~yC~~~~~~-~~~~~~~eei~~~i~~~~~~---~-~~~~I~fsG~GEPll~~~-~i~ell~~~~~~g 109 (292)
+++.+|.|||++|.||+.+... .....+++++.+.+.+.... . .+..+.|+| |||+++.+ .+.++++.+++..
T Consensus 3 ~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~g-g~~~~~~~~~~~~~~~~~~~~~ 81 (216)
T smart00729 3 ALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGG-GTPTLLSPEQLEELLEAIREIL 81 (216)
T ss_pred cEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECC-CCCCCCCHHHHHHHHHHHHHhC
Confidence 4566689999999999986532 13456678888877776321 1 247899999 99999865 4888999998873
Q ss_pred CCCCCCeEEEEcCCchhh---HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEE
Q 022752 110 FQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 186 (292)
Q Consensus 110 ~~~~~~~i~l~TNG~~~~---~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~ 186 (292)
-.-....+.+.|||.... +.++.+.+ ...+.+|+++.+++.++.+. ++.++++++++++ .+++.+. +.+.+
T Consensus 82 ~~~~~~~~~~~tn~~~~~~~~~~~l~~~~-~~~i~isl~~~~~~~~~~~~---~~~~~~~~~~~i~-~~~~~g~-~~v~~ 155 (216)
T smart00729 82 GLADDVEITIETRPGTLTEELLEALKEAG-VNRVSLGVQSGSDEVLKAIN---RGHTVEDVLEAVE-KLREAGP-IKVST 155 (216)
T ss_pred CCCCCeEEEEEeCcccCCHHHHHHHHHcC-CCeEEEecccCCHHHHHHhc---CCCCHHHHHHHHH-HHHHhCC-cceEE
Confidence 100136788999975432 44555544 23688999999999988764 3467899999995 5566673 45555
Q ss_pred EEeCCCC-ChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 187 IMLDGVN-DEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 187 vl~~g~n-d~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
.++.|++ ++.+++.++++++.+.++. +.+.++.|.+
T Consensus 156 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 193 (216)
T smart00729 156 DLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRP 193 (216)
T ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCC
Confidence 5666655 7889999999999999987 8888888764
No 50
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=99.78 E-value=3.5e-17 Score=143.23 Aligned_cols=149 Identities=17% Similarity=0.272 Sum_probs=103.4
Q ss_pred ecCCCC-CCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCC---CC---cCCCCHHHHHHHHHHhhccCCcceEEEecC
Q 022752 16 YDSSLG-KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM---GF---KSNLSSGEIVEQLVHASRLSNIRNVVFMGM 88 (292)
Q Consensus 16 ~~~~~~-~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~---~~---~~~~~~eei~~~i~~~~~~~~~~~I~fsG~ 88 (292)
--+.|+ ..+|+..-- ++.++|+- +.|||++|.||++... .. ...++.+++++.+.+... .++..|+|||
T Consensus 5 v~EiF~~SiQGEG~~~-G~~~~FvR-~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~-~~~~~V~lTG- 80 (238)
T TIGR03365 5 VLEIFGPTIQGEGMVI-GQKTMFVR-TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGG-GTPLHVSLSG- 80 (238)
T ss_pred eeeeecCccccCcccc-CCeEEEEE-eCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhC-CCCCeEEEeC-
Confidence 345566 778866332 44556664 3799999999998531 11 124889999998887643 2578999999
Q ss_pred CccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHH
Q 022752 89 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 168 (292)
Q Consensus 89 GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi 168 (292)
||||++ +.+.++++++++.| ..+.+.|||+++. ..+... ..+.+|+|+++... ...++...
T Consensus 81 GEPll~-~~l~~li~~l~~~g-----~~v~leTNGtl~~--~~l~~~--d~v~vs~K~~~sg~---------~~~~~~~~ 141 (238)
T TIGR03365 81 GNPALQ-KPLGELIDLGKAKG-----YRFALETQGSVWQ--DWFRDL--DDLTLSPKPPSSGM---------ETDWQALD 141 (238)
T ss_pred Cchhhh-HhHHHHHHHHHHCC-----CCEEEECCCCCcH--HHHhhC--CEEEEeCCCCCCCC---------CCcHHHHH
Confidence 999998 57999999999988 6799999998753 222221 24668999876522 12366666
Q ss_pred HHHHHHHHhhCCeEEEEEEEe
Q 022752 169 NALKEYQKNSQQKIFIEYIML 189 (292)
Q Consensus 169 ~~l~~~~~~~~~~v~i~~vl~ 189 (292)
++++ .+.+ +..+.+.+++.
T Consensus 142 ~~ik-~l~~-~~~~~vK~Vv~ 160 (238)
T TIGR03365 142 DCIE-RLDD-GPQTSLKVVVF 160 (238)
T ss_pred HHHH-Hhhh-cCceEEEEEEC
Confidence 6664 3333 46788998876
No 51
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.77 E-value=1e-16 Score=149.03 Aligned_cols=204 Identities=21% Similarity=0.227 Sum_probs=137.2
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCC--CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHH-HHHHHHHHHhCC
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTM--GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYA-ALVEAVRIMTGL 108 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~--~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~-~i~ell~~~~~~ 108 (292)
.|+.+.+ |.+||++|+||+.... .....++.+++.+.+..+....++..|.||| ||||+..+ .|..+++.+++.
T Consensus 108 ~rvLl~v--T~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSG-GDPLll~d~~L~~iL~~L~~I 184 (417)
T TIGR03820 108 DRVLFLV--SNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSG-GDPLLLSDDYLDWILTELRAI 184 (417)
T ss_pred CEEEEEE--cCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeC-CccccCChHHHHHHHHHHhhc
Confidence 4566655 6999999999998652 1224566777666666555545789999999 99999755 456667888886
Q ss_pred -CCCCCCCeEEEEcC-----Cch--hhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCC
Q 022752 109 -PFQVSPKRITVSTV-----GIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180 (292)
Q Consensus 109 -g~~~~~~~i~l~TN-----G~~--~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~ 180 (292)
++ ..+.+.|+ +.. .++.+++.....+-+.++++++. +. .+.+++++ +.++++|+
T Consensus 185 phV----~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~-Ei------------t~~a~~Al-~~L~~aGI 246 (417)
T TIGR03820 185 PHV----EVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPR-EI------------TASSKKAL-AKLADAGI 246 (417)
T ss_pred CCC----ceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChH-hC------------hHHHHHHH-HHHHHcCC
Confidence 31 24778888 332 22333333332344556777652 22 35778888 45677899
Q ss_pred eEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHh---cCCeEEEeeccc
Q 022752 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG---SYNIRTTVRKQM 256 (292)
Q Consensus 181 ~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~---~~g~~v~ir~~~ 256 (292)
.+..++|+++|+||+.+-+.+|.+.|..+++. .++....++.....|..+ .++-.++.+.+++ ++.++..+....
T Consensus 247 ~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFrv~-~~~g~~I~~~lr~~~sG~~vP~~v~d~p 325 (417)
T TIGR03820 247 PLGNQSVLLAGVNDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFRTP-VGKGIEIIESLIGHTSGFAVPTYVVDAP 325 (417)
T ss_pred EEEeeceEECCcCCCHHHHHHHHHHHHHCCCeeceeeeccCCCCcccccCc-HHHHHHHHHHHHHhCCCCCceEEEEecC
Confidence 99999999999999999999999999999887 666666676545566544 4443334444431 455566666544
Q ss_pred c
Q 022752 257 G 257 (292)
Q Consensus 257 g 257 (292)
|
T Consensus 326 g 326 (417)
T TIGR03820 326 G 326 (417)
T ss_pred C
Confidence 3
No 52
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.76 E-value=5.1e-17 Score=132.62 Aligned_cols=157 Identities=20% Similarity=0.355 Sum_probs=113.5
Q ss_pred EcCCCCCcCCcCcCCCCC---CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCC
Q 022752 39 SSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPK 115 (292)
Q Consensus 39 s~t~gCNl~C~yC~~~~~---~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~ 115 (292)
.++.|||++|.||+.+.. .....++++++.+.+.+.....+...+.++| |||+++++. .+++..+.+.- ....
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~-gep~~~~~~-~~~~~~~~~~~--~~~~ 77 (166)
T PF04055_consen 2 ETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGG-GEPTLHPDF-IELLELLRKIK--KRGI 77 (166)
T ss_dssp EEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEES-STGGGSCHH-HHHHHHHHHCT--CTTE
T ss_pred EECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEee-cCCCcchhH-HHHHHHHHHhh--cccc
Confidence 346899999999999753 3345688899999988874223588999999 999999664 45555554430 0128
Q ss_pred eEEEEcCCchhh---HHHHhhhCCCceEEEEecCCChH-HHhhhcCcccCccHHHHHHHHHHHHHhhCCe-EEEEEEEeC
Q 022752 116 RITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQD-VRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLD 190 (292)
Q Consensus 116 ~i~l~TNG~~~~---~~~l~~~~~~~~l~iSld~~~~~-~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v~i~~vl~~ 190 (292)
.+.+.|||.... +..+.+.+ ...+.+++++.+++ .++.+. ++.+++++++++ +.++++|.. +...++++|
T Consensus 78 ~i~~~t~~~~~~~~~l~~l~~~~-~~~i~~~l~s~~~~~~~~~~~---~~~~~~~~~~~l-~~l~~~g~~~~~~~i~~~~ 152 (166)
T PF04055_consen 78 RISINTNGTLLDEELLDELKKLG-VDRIRISLESLDEESVLRIIN---RGKSFERVLEAL-ERLKEAGIPRVIIFIVGLP 152 (166)
T ss_dssp EEEEEEESTTHCHHHHHHHHHTT-CSEEEEEEBSSSHHHHHHHHS---STSHHHHHHHHH-HHHHHTTSETEEEEEEEBT
T ss_pred ceeeeccccchhHHHHHHHHhcC-ccEEecccccCCHHHhhhhhc---CCCCHHHHHHHH-HHHHHcCCCcEEEEEEEeC
Confidence 999999998752 34545443 46688999999999 666653 347899999999 556777777 777788888
Q ss_pred CCCChHHHHHHHHHHH
Q 022752 191 GVNDEEQHAHQLGKLL 206 (292)
Q Consensus 191 g~nd~~~~l~~l~~~l 206 (292)
+. +.++++++++++
T Consensus 153 ~~--~~~e~~~~~~~i 166 (166)
T PF04055_consen 153 GE--NDEEIEETIRFI 166 (166)
T ss_dssp TT--SHHHHHHHHHHH
T ss_pred CC--CHHHHHHHhCcC
Confidence 75 456888888875
No 53
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.74 E-value=3.9e-17 Score=131.42 Aligned_cols=163 Identities=18% Similarity=0.242 Sum_probs=119.7
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCCC-----CcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHh
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTMG-----FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT 106 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~~-----~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~ 106 (292)
+..+.-. -|||+.|.||+++... .+..++|+|+++.+.++.+..+.+.+-+|| +||++-.+++.++++.+.
T Consensus 42 GiaTAD~---VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG-~EP~l~~EHvlevIeLl~ 117 (228)
T COG5014 42 GIATADT---VGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISG-AEPILGREHVLEVIELLV 117 (228)
T ss_pred ceeeccc---cccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeC-CCccccHHHHHHHHHhcc
Confidence 3444444 7999999999996322 245689999999999987667889999999 999999999999999987
Q ss_pred CCCCCCCCCeEEEEcCCchhh-HHHHhhh---CCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeE
Q 022752 107 GLPFQVSPKRITVSTVGIVHA-INKFHSD---LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 182 (292)
Q Consensus 107 ~~g~~~~~~~i~l~TNG~~~~-~~~l~~~---~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v 182 (292)
+. .+.+.|||++.. ...+.++ .+++.+.+|+++++++.+.+|++.+..+ |...++++ +++...+..+
T Consensus 118 ~~-------tFvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~-F~~QL~aL-r~L~~~g~rf 188 (228)
T COG5014 118 NN-------TFVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEY-FRYQLKAL-RHLHGKGHRF 188 (228)
T ss_pred Cc-------eEEEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHH-HHHHHHHH-HHHHhcCcee
Confidence 64 689999998652 2233332 2356677999999999999997554433 88889999 5565556655
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHhhCC
Q 022752 183 FIEYIMLDGVNDEEQHAHQLGKLLETFQ 210 (292)
Q Consensus 183 ~i~~vl~~g~nd~~~~l~~l~~~l~~~~ 210 (292)
+..++. ++ -.++..+++++-|.+++
T Consensus 189 ~pA~~~--~f-~~Ed~~k~Lak~Lgehp 213 (228)
T COG5014 189 WPAVVY--DF-FREDGLKELAKRLGEHP 213 (228)
T ss_pred eehhhh--cc-chhhhHHHHHHHhccCC
Confidence 544332 22 23444566888887754
No 54
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.73 E-value=2.6e-16 Score=132.05 Aligned_cols=172 Identities=23% Similarity=0.314 Sum_probs=122.0
Q ss_pred cCCCCCcCCcCcCCCCCCCcCCCCH---HHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCe
Q 022752 40 SQVGCKMGCNFCATGTMGFKSNLSS---GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKR 116 (292)
Q Consensus 40 ~t~gCNl~C~yC~~~~~~~~~~~~~---eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~ 116 (292)
++.|||++|.||+............ +++.+.+..... .+...+.|+| |||++++ .+.++++.+++.. +...
T Consensus 3 ~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~g-gep~~~~-~~~~~i~~~~~~~---~~~~ 76 (204)
T cd01335 3 LTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKE-RGVEVVILTG-GEPLLYP-ELAELLRRLKKEL---PGFE 76 (204)
T ss_pred cCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHh-cCceEEEEeC-CcCCccH-hHHHHHHHHHhhC---CCce
Confidence 4689999999999965433222222 233333333332 3678899999 9999986 7889999999872 1278
Q ss_pred EEEEcCCch--hh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCC
Q 022752 117 ITVSTVGIV--HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN 193 (292)
Q Consensus 117 i~l~TNG~~--~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~n 193 (292)
+.+.|||.. .+ +.++.+.+ ...+.+|+++.++..+..+. ....++++++++++. +.+.+..+.+.+++..+.+
T Consensus 77 ~~i~T~~~~~~~~~~~~l~~~g-~~~i~i~le~~~~~~~~~~~--~~~~~~~~~~~~i~~-~~~~~~~~~~~~i~g~~~~ 152 (204)
T cd01335 77 ISIETNGTLLTEELLKELKELG-LDGVGVSLDSGDEEVADKIR--GSGESFKERLEALKE-LREAGLGLSTTLLVGLGDE 152 (204)
T ss_pred EEEEcCcccCCHHHHHHHHhCC-CceEEEEcccCCHHHHHHHh--cCCcCHHHHHHHHHH-HHHcCCCceEEEEEecCCC
Confidence 999999976 32 45555543 46688999999999988875 245789999999954 5556788888888777655
Q ss_pred ChHHHHHHHHHHHhhCC-cE-EEEEecCCCC
Q 022752 194 DEEQHAHQLGKLLETFQ-VV-VNLIPFNPIG 222 (292)
Q Consensus 194 d~~~~l~~l~~~l~~~~-~~-v~l~p~~p~~ 222 (292)
+ .+++.+.++++.+.+ +. +.+.+|.|.+
T Consensus 153 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~p~~ 182 (204)
T cd01335 153 D-EEDDLEELELLAEFRSPDRVSLFRLLPEE 182 (204)
T ss_pred h-hHHHHHHHHHHHhhcCcchhhhhhhcccC
Confidence 4 456667777777765 54 7777888874
No 55
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=99.73 E-value=1.6e-17 Score=136.02 Aligned_cols=119 Identities=20% Similarity=0.257 Sum_probs=81.8
Q ss_pred CCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCC---CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCH
Q 022752 19 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY 95 (292)
Q Consensus 19 ~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~---~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~ 95 (292)
.++.+|| ||.|.++|+ .|||++|+||+++.. ..+..++.+++.+.+..+.....+..|+|+| ||||+++
T Consensus 7 ~~s~~dG----~G~r~~if~---~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sG-GEPllq~ 78 (154)
T TIGR02491 7 PDDIVNG----EGIRVSLFV---AGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNPLIDGLTLSG-GDPLYPR 78 (154)
T ss_pred ECceecC----CCcEEEEEE---CCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeC-hhhCCCC
Confidence 4678999 999999998 899999999999643 2345688444333333333322357899999 9999975
Q ss_pred --HHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh-HHH---HhhhCCCceEEEEecCCChH
Q 022752 96 --AALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA-INK---FHSDLPGLNLAVSLHAPVQD 150 (292)
Q Consensus 96 --~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~-~~~---l~~~~~~~~l~iSld~~~~~ 150 (292)
+.+.++++++++. + .++.+.|||+... +.+ ..+.+..+|+.++.+..++.
T Consensus 79 ~~~~l~~ll~~~k~~~~-----~~~~~~~tG~~~~~~~~~~~~~~~l~~~D~liDgk~~~~~ 135 (154)
T TIGR02491 79 NVEELIELVKKIKAEFP-----EKDIWLWTGYTWEEILEDEKHLEVLKYIDVLVDGKFELSK 135 (154)
T ss_pred CHHHHHHHHHHHHHhCC-----CCCEEEeeCccHHHHhcchhHHHHHhhCCEEEechhhhhc
Confidence 8999999999986 4 4567779997643 211 01223346766666655443
No 56
>PRK07094 biotin synthase; Provisional
Probab=99.68 E-value=1.2e-14 Score=132.93 Aligned_cols=193 Identities=16% Similarity=0.201 Sum_probs=139.2
Q ss_pred EEEcCCCCCcCCcCcCCCCCCC--c-CCCCHHHHHHHHHHhhccCCcceEEEecCCc-cccCHHHHHHHHHHHhCC-CCC
Q 022752 37 CISSQVGCKMGCNFCATGTMGF--K-SNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNNYAALVEAVRIMTGL-PFQ 111 (292)
Q Consensus 37 ~is~t~gCNl~C~yC~~~~~~~--~-~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE-Pll~~~~i~ell~~~~~~-g~~ 111 (292)
.+..|.+|+++|.||..+.... . ..++++++++.+..... .++..|.|+| |+ |++..+.+.++++.+++. +
T Consensus 42 ~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~-~g~~~i~l~g-G~~~~~~~~~l~~l~~~i~~~~~-- 117 (323)
T PRK07094 42 LIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYE-LGYRTIVLQS-GEDPYYTDEKIADIIKEIKKELD-- 117 (323)
T ss_pred EEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHH-CCCCEEEEec-CCCCCCCHHHHHHHHHHHHccCC--
Confidence 4566899999999998754321 1 23689999999887665 4789999999 96 666778899999999985 4
Q ss_pred CCCCeEEEEcCCchhh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEE-e
Q 022752 112 VSPKRITVSTVGIVHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM-L 189 (292)
Q Consensus 112 ~~~~~i~l~TNG~~~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl-~ 189 (292)
..+.+++.....+ +..+.+++ ...+.+++++.+++.++.+.+ ..++++.++++ +.+++.|..+...+++ +
T Consensus 118 ---l~i~~~~g~~~~e~l~~Lk~aG-~~~v~~glEs~~~~~~~~i~~---~~s~~~~~~~i-~~l~~~Gi~v~~~~iiGl 189 (323)
T PRK07094 118 ---VAITLSLGERSYEEYKAWKEAG-ADRYLLRHETADKELYAKLHP---GMSFENRIACL-KDLKELGYEVGSGFMVGL 189 (323)
T ss_pred ---ceEEEecCCCCHHHHHHHHHcC-CCEEEeccccCCHHHHHHhCC---CCCHHHHHHHH-HHHHHcCCeecceEEEEC
Confidence 4566544322222 45666654 355778999999999999864 46899999999 5677788876665554 2
Q ss_pred CCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC--CCCCcCCCcHHHHHHHHHHHH
Q 022752 190 DGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 190 ~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~--~~~~~~~~~~e~l~~~~~~l~ 243 (292)
| .++.+++.+.+++++++++. +.+.+|.|.+ +..+..+++.+++.++.+.++
T Consensus 190 p--get~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R 244 (323)
T PRK07094 190 P--GQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLR 244 (323)
T ss_pred C--CCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHH
Confidence 3 45778999999999999876 7777888764 233344567777666555544
No 57
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=99.67 E-value=1.5e-16 Score=127.63 Aligned_cols=89 Identities=30% Similarity=0.543 Sum_probs=62.4
Q ss_pred CCCceEEEEEcCCCCCcCCcCcCCCCCC---CcCCCCHHHHHHHHHHhhccCCcceEEEecCCcccc--CHHHHHHHHHH
Q 022752 30 GGPRSTLCISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN--NYAALVEAVRI 104 (292)
Q Consensus 30 ~~~r~~l~is~t~gCNl~C~yC~~~~~~---~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll--~~~~i~ell~~ 104 (292)
+|.|.++|. .+||++|.||+++... ....++ .+.++++.+.....++..|.|+| ||||+ +++.+.+++++
T Consensus 4 ~g~~~~~~t---~~Cnl~C~yC~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~i~l~G-GEPll~~~~~~l~~i~~~ 78 (139)
T PF13353_consen 4 EGIRVVLFT---NGCNLRCKYCFNSEIWKFKRGKELS-EEIIEEIIEELKNYGIKGIVLTG-GEPLLHENYDELLEILKY 78 (139)
T ss_dssp SSCEEEEEE---C--SB--TT-TTCCCS-TT-SEEC--HHHHHHHCHHHCCCCCCEEEEEC-STGGGHHSHHHHHHHHHH
T ss_pred CCEEEEEEc---CcccccCcCcCCcccCccccccccc-chhhhhhhhHHhcCCceEEEEcC-CCeeeeccHhHHHHHHHH
Confidence 789999995 7899999999986432 223344 56666665544345789999999 99999 88999999999
Q ss_pred HhCCCCCCCCCeEEEEcCCchhh
Q 022752 105 MTGLPFQVSPKRITVSTVGIVHA 127 (292)
Q Consensus 105 ~~~~g~~~~~~~i~l~TNG~~~~ 127 (292)
+++.+. ..+.+.|||+...
T Consensus 79 ~k~~~~----~~~~~~tng~~~~ 97 (139)
T PF13353_consen 79 IKEKFP----KKIIILTNGYTLD 97 (139)
T ss_dssp HHHTT-----SEEEEEETT--HH
T ss_pred HHHhCC----CCeEEEECCCchh
Confidence 999861 4789999997643
No 58
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=99.61 E-value=3.4e-15 Score=122.07 Aligned_cols=94 Identities=21% Similarity=0.343 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCC---CCcCCCCHHHHHHHHHHhhccCC--cceEEEecCCccccC
Q 022752 20 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSN--IRNVVFMGMGEPLNN 94 (292)
Q Consensus 20 ~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~---~~~~~~~~eei~~~i~~~~~~~~--~~~I~fsG~GEPll~ 94 (292)
.+.+|| ||.|.++|+ +|||++|.||++... ..+..++ ++.++++.+...... ...|+|+| ||||++
T Consensus 9 ~~~~~G----pG~r~~if~---~GCnl~C~~C~n~~~~~~~~g~~~~-~~~~~~il~~~~~~~~~~~gvt~sG-GEPl~~ 79 (154)
T PRK11121 9 VDVVNG----PGTRCTLFV---SGCVHQCPGCYNKSTWRLNSGHPFT-KEMEDQIIADLNDTRIKRQGLSLSG-GDPLHP 79 (154)
T ss_pred CCeecC----CCcEEEEEc---CCCCCcCcCCCChhhccCCCCcccC-HHHHHHHHHHHHHhCCCCCcEEEEC-CCccch
Confidence 568999 999999999 899999999999543 2233345 344455444321112 37899999 999985
Q ss_pred --HHHHHHHHHHHhCCCCCCCCCeEEEEcCCchh
Q 022752 95 --YAALVEAVRIMTGLPFQVSPKRITVSTVGIVH 126 (292)
Q Consensus 95 --~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~ 126 (292)
.+.+.++++++++.- +...+ +.+||+..
T Consensus 80 ~~~~~l~~l~~~~k~~~---~~~~i-~~~tGy~~ 109 (154)
T PRK11121 80 QNVPDILKLVQRVKAEC---PGKDI-WVWTGYKL 109 (154)
T ss_pred hhHHHHHHHHHHHHHHC---CCCCE-EEecCCCH
Confidence 377888888888751 11344 45799764
No 59
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=99.61 E-value=3.2e-13 Score=121.15 Aligned_cols=219 Identities=18% Similarity=0.249 Sum_probs=139.5
Q ss_pred CCCCCCCC--CCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcC--CCCHHHHHHHHHHhhccCCcceEEEecCCccccC-
Q 022752 20 LGKYNGKP--RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS--NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN- 94 (292)
Q Consensus 20 ~~~~~g~~--~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~--~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~- 94 (292)
.|.+.|-- +| .|+.+.. +.+|...|+||++..+.... .++.+++-..++-++..+.+..|.||| ||||+-
T Consensus 99 ~s~Vpgl~HrY~--drvLll~--t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSG-GDPL~ls 173 (369)
T COG1509 99 SSPVPGLTHRYP--DRVLLLV--TGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSG-GDPLSLS 173 (369)
T ss_pred cCCCCCceeecC--CeEEEEe--cCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecC-CCccccC
Confidence 45666654 34 6666666 58999999999996543322 245566544454456566789999999 999996
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCC--chhh--HHHHhhhCC--CceEEEEecCCChHHHhhhcCcccCccHHHHH
Q 022752 95 YAALVEAVRIMTGLPFQVSPKRITVSTVG--IVHA--INKFHSDLP--GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 168 (292)
Q Consensus 95 ~~~i~ell~~~~~~g~~~~~~~i~l~TNG--~~~~--~~~l~~~~~--~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi 168 (292)
.+.|..+++.+++.. +-..+.+-|-. ++|. ...|.+.+. ...+.+..+..++. +++ ..+.
T Consensus 174 ~~~L~~ll~~L~~Ip---Hv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~---Eit--------~e~~ 239 (369)
T COG1509 174 DKKLEWLLKRLRAIP---HVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPN---EIT--------PEAR 239 (369)
T ss_pred HHHHHHHHHHHhcCC---ceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChh---hcC--------HHHH
Confidence 456888999998873 12445566655 2332 123333322 13444444433322 221 2345
Q ss_pred HHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHH---HHHh
Q 022752 169 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQK---ILRG 244 (292)
Q Consensus 169 ~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~---~l~~ 244 (292)
+++ +.+...|+.+..++|+++|+||+.+-+.+|.+.|...++. .++....+......|..+..+-++.+++ .+.
T Consensus 240 ~A~-~~L~~aGv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr~~i~~~~~i~~~lr~~~S- 317 (369)
T COG1509 240 EAC-AKLRDAGVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFRVPIAEGLQIVEELRGRTS- 317 (369)
T ss_pred HHH-HHHHHcCceeecchheecccCCCHHHHHHHHHHHHHcCCcceEEeccCccCCccceeccHHHHHHHHHHHHHhCC-
Confidence 666 4566789999999999999999999999999999888876 5565555554455666554444333333 333
Q ss_pred cCCeEEEeecccccc
Q 022752 245 SYNIRTTVRKQMGQD 259 (292)
Q Consensus 245 ~~g~~v~ir~~~g~~ 259 (292)
++.+++.++...|..
T Consensus 318 G~~~P~~v~d~pgg~ 332 (369)
T COG1509 318 GYAVPTLVVDIPGGG 332 (369)
T ss_pred CcccceeEEecCCCC
Confidence 566677777655444
No 60
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.59 E-value=2.2e-13 Score=126.73 Aligned_cols=198 Identities=12% Similarity=0.102 Sum_probs=142.4
Q ss_pred EEEEcCCCCCcCCcCcCCCCC--CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccC--HHHHHHHHHHHhCCCCC
Q 022752 36 LCISSQVGCKMGCNFCATGTM--GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN--YAALVEAVRIMTGLPFQ 111 (292)
Q Consensus 36 l~is~t~gCNl~C~yC~~~~~--~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~--~~~i~ell~~~~~~g~~ 111 (292)
+.++.|.+|+.+|.||..... .....++++|+++.+..+.. .++..|.|+| ||+... .+.+.++++.+++.-
T Consensus 76 ~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~-~Gv~~i~lvg-Ge~p~~~~~e~l~~~i~~Ik~~~-- 151 (371)
T PRK09240 76 TPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKK-LGFEHILLLT-GEHEAKVGVDYIRRALPIAREYF-- 151 (371)
T ss_pred eceEEcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHh-CCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhC--
Confidence 445668999999999976421 11256899999999888665 4899999999 997763 678889999998752
Q ss_pred CCCCeEEEEcCCchh-hHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeC
Q 022752 112 VSPKRITVSTVGIVH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 190 (292)
Q Consensus 112 ~~~~~i~l~TNG~~~-~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~ 190 (292)
..+.+.++.... .+..|.+++ ...+.+++++.+++.+..+++..+..++++.++++ +.+.+.|.. .+++.++-
T Consensus 152 ---p~i~i~~g~lt~e~l~~Lk~aG-v~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i-~~a~~aG~~-~v~~g~i~ 225 (371)
T PRK09240 152 ---SSVSIEVQPLSEEEYAELVELG-LDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETP-ERAGRAGIR-KIGLGALL 225 (371)
T ss_pred ---CCceeccCCCCHHHHHHHHHcC-CCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHH-HHHHHcCCC-eeceEEEe
Confidence 235566665433 356666665 35788999999999999997544567899999999 556677764 57788888
Q ss_pred CCCChHHHHHHHHHHHhhCCc-------EEEEEecCCCC-CCCCcCCCcHHHHHHHHHHHH
Q 022752 191 GVNDEEQHAHQLGKLLETFQV-------VVNLIPFNPIG-SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 191 g~nd~~~~l~~l~~~l~~~~~-------~v~l~p~~p~~-~~~~~~~~~~e~l~~~~~~l~ 243 (292)
|++++.++..+++..++.+++ .|.+.-++|.. +.....+.+.+++.+....++
T Consensus 226 Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~~~~~e~l~~ia~~R 286 (371)
T PRK09240 226 GLSDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTGGIEPASIVSDKQLVQLICAFR 286 (371)
T ss_pred cCCccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 999999899888887777643 24444456653 223344567777776655544
No 61
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=99.58 E-value=2.8e-14 Score=115.54 Aligned_cols=84 Identities=23% Similarity=0.312 Sum_probs=69.4
Q ss_pred CCceEEEEEcCCCCCcCCcCcCCCCC---CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhC
Q 022752 31 GPRSTLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG 107 (292)
Q Consensus 31 ~~r~~l~is~t~gCNl~C~yC~~~~~---~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~ 107 (292)
..++++|+ .|||++|.||++... ..+..++.+++++.+.+... .+..|+||| || ++++.+.++++++++
T Consensus 15 ~~~~~vfl---~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~~--~~~gVt~SG-GE--l~~~~l~~ll~~lk~ 86 (147)
T TIGR02826 15 EYSLAFYI---TGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYRS--LISCVLFLG-GE--WNREALLSLLKIFKE 86 (147)
T ss_pred CEEEEEEe---CCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhCC--CCCEEEEec-hh--cCHHHHHHHHHHHHH
Confidence 37899999 899999999999533 23457999999999887653 357999999 99 567889999999999
Q ss_pred CCCCCCCCeEEEEcCCchhh
Q 022752 108 LPFQVSPKRITVSTVGIVHA 127 (292)
Q Consensus 108 ~g~~~~~~~i~l~TNG~~~~ 127 (292)
.| ..+.+.||++.++
T Consensus 87 ~G-----l~i~l~Tg~~~~~ 101 (147)
T TIGR02826 87 KG-----LKTCLYTGLEPKD 101 (147)
T ss_pred CC-----CCEEEECCCCCHH
Confidence 88 6799999987644
No 62
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.58 E-value=9.5e-13 Score=118.93 Aligned_cols=194 Identities=15% Similarity=0.229 Sum_probs=128.5
Q ss_pred eEEEEE-cCCCCCcCCcCcCCCCCC-----CcCCCCHHHHHHHHHHhhccCCcceE--EEecCCccccC--HHHHHHHHH
Q 022752 34 STLCIS-SQVGCKMGCNFCATGTMG-----FKSNLSSGEIVEQLVHASRLSNIRNV--VFMGMGEPLNN--YAALVEAVR 103 (292)
Q Consensus 34 ~~l~is-~t~gCNl~C~yC~~~~~~-----~~~~~~~eei~~~i~~~~~~~~~~~I--~fsG~GEPll~--~~~i~ell~ 103 (292)
....++ .|.+||++|.||..+... ..+.++++++++.+.+... .++..+ +.+| ++|... .+.+.++.+
T Consensus 28 ~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~~~l~~~g-~~~~~~~~~~~~~~i~~ 105 (296)
T TIGR00433 28 LCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKA-AGATRFCLVASG-RGPKDREFMEYVEAMVQ 105 (296)
T ss_pred EEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH-CCCCEEEEEEec-CCCChHHHHHHHHHHHH
Confidence 333344 389999999999875321 2355788999998887654 356554 3445 777653 124555555
Q ss_pred HHhCCCCCCCCCeEEEEcCCchh-h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe
Q 022752 104 IMTGLPFQVSPKRITVSTVGIVH-A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181 (292)
Q Consensus 104 ~~~~~g~~~~~~~i~l~TNG~~~-~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~ 181 (292)
.+++.+ .++.+ +.|.+. + ++.+.+++ ...+.++++ .+++.++.+.+ +.++++.++++ +.+++.|..
T Consensus 106 ~~~~~~-----i~~~~-~~g~~~~e~l~~Lk~aG-~~~v~i~~E-~~~~~~~~i~~---~~s~~~~~~ai-~~l~~~Gi~ 173 (296)
T TIGR00433 106 IVEEMG-----LKTCA-TLGLLDPEQAKRLKDAG-LDYYNHNLD-TSQEFYSNIIS---THTYDDRVDTL-ENAKKAGLK 173 (296)
T ss_pred HHHhCC-----CeEEe-cCCCCCHHHHHHHHHcC-CCEEEEccc-CCHHHHhhccC---CCCHHHHHHHH-HHHHHcCCE
Confidence 555555 45544 346443 2 44555554 356778999 78899988753 46899999999 456778887
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC--CCCCcCCCcHHHHHHHHHHHH
Q 022752 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 182 v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~--~~~~~~~~~~e~l~~~~~~l~ 243 (292)
+...+++ |.+++.+++.+.++++.++++. +.+.++.|.+ +...+.+++.+++.++...++
T Consensus 174 v~~~~i~--Gl~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r 236 (296)
T TIGR00433 174 VCSGGIF--GLGETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALKTIALAR 236 (296)
T ss_pred EEEeEEE--eCCCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHH
Confidence 6665443 5677889999999999998876 6666666653 344566778777666555444
No 63
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.3e-14 Score=124.43 Aligned_cols=96 Identities=26% Similarity=0.469 Sum_probs=78.2
Q ss_pred cCCCCCCCCCCCCCC---CceEEEEEcCCCCCcCCcCcCCC---CC---CCcCCCCHHHHHHHHHHhhccCCcceEEEec
Q 022752 17 DSSLGKYNGKPRPGG---PRSTLCISSQVGCKMGCNFCATG---TM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMG 87 (292)
Q Consensus 17 ~~~~~~~~g~~~~~~---~r~~l~is~t~gCNl~C~yC~~~---~~---~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG 87 (292)
-+.|.+.+| +| +|.++|+.. .|||++|.||++. .. .....++.+++++++..... ....|+|||
T Consensus 7 ~EiF~siQG----EG~~~Gr~~vFVR~-~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~--~~~~V~lTG 79 (212)
T COG0602 7 VEIFDSIQG----EGKNIGRPSVFVRF-AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGY--KARGVSLTG 79 (212)
T ss_pred EEEEEEEec----CcccccceeEEEEc-CCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcCC--CcceEEEeC
Confidence 345778999 88 999999964 5999999999984 22 13466888999998887532 345999999
Q ss_pred CCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchh
Q 022752 88 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH 126 (292)
Q Consensus 88 ~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~ 126 (292)
|||+++ +.+.++++.+++.| .++.+.|||++.
T Consensus 80 -GEP~~~-~~l~~Ll~~l~~~g-----~~~~lETngti~ 111 (212)
T COG0602 80 -GEPLLQ-PNLLELLELLKRLG-----FRIALETNGTIP 111 (212)
T ss_pred -CcCCCc-ccHHHHHHHHHhCC-----ceEEecCCCCcc
Confidence 999775 67999999999998 789999999875
No 64
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=99.53 E-value=1.7e-14 Score=112.73 Aligned_cols=83 Identities=25% Similarity=0.430 Sum_probs=48.7
Q ss_pred CCCCCcCCcCcCCCC---CCCcCCCCHHHHHHHHHHhhcc-CCcceEEEecCCccc--cCHHHHHHHHHHHhCCCCCCCC
Q 022752 41 QVGCKMGCNFCATGT---MGFKSNLSSGEIVEQLVHASRL-SNIRNVVFMGMGEPL--NNYAALVEAVRIMTGLPFQVSP 114 (292)
Q Consensus 41 t~gCNl~C~yC~~~~---~~~~~~~~~eei~~~i~~~~~~-~~~~~I~fsG~GEPl--l~~~~i~ell~~~~~~g~~~~~ 114 (292)
+.+||++|.||++.. ......++.+++.+.+...... .....|.|+| |||| ++++.+.++++++++.+ +.
T Consensus 5 t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~G-GEPll~~~~~~l~~~i~~~~~~~---~~ 80 (119)
T PF13394_consen 5 TSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTG-GEPLLYLNPEDLIELIEYLKERG---PE 80 (119)
T ss_dssp -S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEES-SSGGGSTTHHHHHHHHCTSTT-------
T ss_pred cCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEEC-CCCccccCHHHHHHHHHHHHhhC---CC
Confidence 589999999999843 2234556777776766644332 1235799999 9999 55778999999999875 33
Q ss_pred CeEEEEcCCchhh
Q 022752 115 KRITVSTVGIVHA 127 (292)
Q Consensus 115 ~~i~l~TNG~~~~ 127 (292)
..+.+.|||+++.
T Consensus 81 ~~i~i~TNg~~~~ 93 (119)
T PF13394_consen 81 IKIRIETNGTLPT 93 (119)
T ss_dssp -EEEEEE-STTHH
T ss_pred ceEEEEeCCeecc
Confidence 7899999998864
No 65
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.51 E-value=2.4e-12 Score=124.34 Aligned_cols=174 Identities=12% Similarity=0.166 Sum_probs=127.4
Q ss_pred EEEcCCCCCcCCcCcCCCCCC-CcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCC-CCCCC
Q 022752 37 CISSQVGCKMGCNFCATGTMG-FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 114 (292)
Q Consensus 37 ~is~t~gCNl~C~yC~~~~~~-~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g-~~~~~ 114 (292)
.+.+++|||++|.||..+... .-+..+++.+++++....+..++..+.|++ .+|+++.+.+.++++.+.+.+ ++
T Consensus 196 ~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~D-d~f~~~~~~~~~l~~~l~~~~~l~--- 271 (497)
T TIGR02026 196 VPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILAD-EEPTINRKKFQEFCEEIIARNPIS--- 271 (497)
T ss_pred eeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEe-cccccCHHHHHHHHHHHHhcCCCC---
Confidence 455679999999999886532 236678999999999875545788999999 999999888999999998764 32
Q ss_pred CeEEEEcCCch----hh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEE-
Q 022752 115 KRITVSTVGIV----HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM- 188 (292)
Q Consensus 115 ~~i~l~TNG~~----~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl- 188 (292)
....+.|.... .+ +..+.+++ -..+.+.+++.+++..+.+. +..+.+++.+++ +.++++|+.+.+.+++
T Consensus 272 i~w~~~~r~~~i~~d~ell~~l~~aG-~~~v~iGiES~~~~~L~~~~---K~~t~~~~~~ai-~~l~~~Gi~~~~~~I~G 346 (497)
T TIGR02026 272 VTWGINTRVTDIVRDADILHLYRRAG-LVHISLGTEAAAQATLDHFR---KGTTTSTNKEAI-RLLRQHNILSEAQFITG 346 (497)
T ss_pred eEEEEecccccccCCHHHHHHHHHhC-CcEEEEccccCCHHHHHHhc---CCCCHHHHHHHH-HHHHHCCCcEEEEEEEE
Confidence 33444444321 22 23334444 35678899999999988773 456889999999 6678889888777665
Q ss_pred eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 189 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 189 ~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
+| +++.+++.+.++++.++++. +.+..+.|.
T Consensus 347 ~P--~et~e~~~~t~~~~~~l~~~~~~~~~~tP~ 378 (497)
T TIGR02026 347 FE--NETDETFEETYRQLLDWDPDQANWLMYTPW 378 (497)
T ss_pred CC--CCCHHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 34 47889999999999998765 444444443
No 66
>PRK06256 biotin synthase; Validated
Probab=99.51 E-value=3.9e-12 Score=117.03 Aligned_cols=189 Identities=14% Similarity=0.164 Sum_probs=129.0
Q ss_pred CCCCCcCCcCcCCCCCC-----CcCCCCHHHHHHHHHHhhccCCcceEEE-ecCCccccC-HHHHHHHHHHHhCCCCCCC
Q 022752 41 QVGCKMGCNFCATGTMG-----FKSNLSSGEIVEQLVHASRLSNIRNVVF-MGMGEPLNN-YAALVEAVRIMTGLPFQVS 113 (292)
Q Consensus 41 t~gCNl~C~yC~~~~~~-----~~~~~~~eei~~~i~~~~~~~~~~~I~f-sG~GEPll~-~~~i~ell~~~~~~g~~~~ 113 (292)
+.+||++|.||..+... ..+.++++++++.+.+..+. +...+.| +|.++|... .+.+.++++.+++. .+
T Consensus 65 s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~-~~-- 140 (336)
T PRK06256 65 SGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEE-GAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE-TD-- 140 (336)
T ss_pred CCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHC-CCCEEEEEecCCCCCchHHHHHHHHHHHHHhc-CC--
Confidence 69999999999885321 12457999999999886653 5544443 441556543 24788999999876 22
Q ss_pred CCeEEEEcCCchh-h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCC
Q 022752 114 PKRITVSTVGIVH-A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG 191 (292)
Q Consensus 114 ~~~i~l~TNG~~~-~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g 191 (292)
..+.+ ++|.+. + +.++.+++ ...+.+++++ +++.+..+.+ ..++++.++++ +.+++.|..+...+++ |
T Consensus 141 -i~~~~-~~g~l~~e~l~~LkeaG-~~~v~~~lEt-s~~~~~~i~~---~~t~~~~i~~i-~~a~~~Gi~v~~~~I~--G 210 (336)
T PRK06256 141 -LEICA-CLGLLTEEQAERLKEAG-VDRYNHNLET-SRSYFPNVVT---THTYEDRIDTC-EMVKAAGIEPCSGGII--G 210 (336)
T ss_pred -CcEEe-cCCcCCHHHHHHHHHhC-CCEEecCCcc-CHHHHhhcCC---CCCHHHHHHHH-HHHHHcCCeeccCeEE--e
Confidence 33333 356543 2 45555655 3457789999 9999988853 35899999999 5577788776555443 5
Q ss_pred CCChHHHHHHHHHHHhhCCcE-EEEEecCCCC--CCCCcCCCcHHHHHHHHHHHH
Q 022752 192 VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 192 ~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~--~~~~~~~~~~e~l~~~~~~l~ 243 (292)
.+++.+++.+++++++++++. +.+.++.|.+ +....++++.+++.+....++
T Consensus 211 lgEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~R 265 (336)
T PRK06256 211 MGESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFR 265 (336)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 678889999999999999876 6666676653 233445567777777666555
No 67
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.48 E-value=4.7e-12 Score=120.29 Aligned_cols=181 Identities=13% Similarity=0.235 Sum_probs=123.0
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEec-----CCccccCHHHHHHHHHHHhC
Q 022752 34 STLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMG-----MGEPLNNYAALVEAVRIMTG 107 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG-----~GEPll~~~~i~ell~~~~~ 107 (292)
...++.++.|||++|.||..+.. +..+..+++++++++....+. +.+.|.|+| +|+++.+.+.+.++++.+.+
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~-g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~ 213 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQ-GVKEIILIAQDTTAYGKDLYRESKLVDLLEELGK 213 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHHC-CCcEEEEEeECCCccccCCCCcccHHHHHHHHHh
Confidence 44567778999999999987643 234667899999999987653 678888875 37776655678899999987
Q ss_pred CCCCCCCCeEEE-Ec--CCchhhHHHHhhhCC--CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeE
Q 022752 108 LPFQVSPKRITV-ST--VGIVHAINKFHSDLP--GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 182 (292)
Q Consensus 108 ~g~~~~~~~i~l-~T--NG~~~~~~~l~~~~~--~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v 182 (292)
.+ ++. .+.+ .+ ....+++.+++...+ ...+.+++++.+++..+.+. ++.+.+++.++++ .+++.+..+
T Consensus 214 ~~-~i~--~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~---k~~~~~~~~~~i~-~l~~~~~~i 286 (430)
T TIGR01125 214 VG-GIY--WIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMR---RPGSGEQQLDFIE-RLREKCPDA 286 (430)
T ss_pred cC-Ccc--EEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCC---CCCCHHHHHHHHH-HHHHhCCCC
Confidence 63 011 2222 12 223333333333221 23567899999999988773 4567888999995 455554444
Q ss_pred EEEEEEeCCC-CChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 183 FIEYIMLDGV-NDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 183 ~i~~vl~~g~-nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
.+.+.++-|+ +++++++++.++++.+.++. +++.+|.|.+
T Consensus 287 ~i~~~~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~p 328 (430)
T TIGR01125 287 VLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEE 328 (430)
T ss_pred eEeEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCC
Confidence 4444444342 57889999999999998875 7777887764
No 68
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=99.47 E-value=7.1e-13 Score=117.03 Aligned_cols=162 Identities=19% Similarity=0.236 Sum_probs=114.8
Q ss_pred CCCCCC-CCCCceEEEEEcCCCCCcCCcCcCCCCCCC--------c-CCCCHHHHHHHHHHhhccCCcceEEEecCCccc
Q 022752 23 YNGKPR-PGGPRSTLCISSQVGCKMGCNFCATGTMGF--------K-SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL 92 (292)
Q Consensus 23 ~~g~~~-~~~~r~~l~is~t~gCNl~C~yC~~~~~~~--------~-~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPl 92 (292)
..||.. .+|.+.+||+ |.-||.+|.||+.+.... . +.-+.+++++++... +..++.+|| |||+
T Consensus 18 pkGC~~C~~G~KlVlFv--TG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~----~a~GasiTG-GdPl 90 (353)
T COG2108 18 PKGCRLCVLGGKLVLFV--TGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLM----DALGASITG-GDPL 90 (353)
T ss_pred cchhHHHhcCCceEEEE--ecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHh----ccccccccC-CChH
Confidence 345552 5678889999 588999999999853221 1 223456666555433 347899999 9999
Q ss_pred cCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh---HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHH
Q 022752 93 NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 168 (292)
Q Consensus 93 l~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~---~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi 168 (292)
+..++..++++.+|+. |- ..++.+.|+|.+.. +++|.++++ .-+.+....++ ....++.+
T Consensus 91 ~~ieR~~~~ir~LK~efG~---~fHiHLYT~g~~~~~e~l~~L~eAGL-DEIRfHp~~~~------------~~~~e~~i 154 (353)
T COG2108 91 LEIERTVEYIRLLKDEFGE---DFHIHLYTTGILATEEALKALAEAGL-DEIRFHPPRPG------------SKSSEKYI 154 (353)
T ss_pred HHHHHHHHHHHHHHHhhcc---ceeEEEeeccccCCHHHHHHHHhCCC-CeEEecCCCcc------------ccccHHHH
Confidence 9999999999999987 42 38999999998754 455555542 34555332111 12346677
Q ss_pred HHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCc
Q 022752 169 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 211 (292)
Q Consensus 169 ~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~ 211 (292)
+++ ..+++++..+-+.++.+|| .++.+.++++++.+.+.
T Consensus 155 ~~l-~~A~~~g~dvG~EiPaipg---~e~~i~e~~~~~~~~~~ 193 (353)
T COG2108 155 ENL-KIAKKYGMDVGVEIPAIPG---EEEAILEFAKALDENGL 193 (353)
T ss_pred HHH-HHHHHhCccceeecCCCcc---hHHHHHHHHHHHHhccc
Confidence 888 5567889999999999998 45677888888888763
No 69
>PRK08508 biotin synthase; Provisional
Probab=99.46 E-value=9.5e-12 Score=111.54 Aligned_cols=194 Identities=13% Similarity=0.155 Sum_probs=130.7
Q ss_pred EEEEEcCCCCCcCCcCcCCCCCC---Cc--CCCCHHHHHHHHHHhhccCCcceEEEecCCccc--cCHHHHHHHHHHHhC
Q 022752 35 TLCISSQVGCKMGCNFCATGTMG---FK--SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL--NNYAALVEAVRIMTG 107 (292)
Q Consensus 35 ~l~is~t~gCNl~C~yC~~~~~~---~~--~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPl--l~~~~i~ell~~~~~ 107 (292)
++.-..+.+||.+|.||..+... .. +.++++++++.+.++.. .++..+.|.+.|+-+ ...+.+.++++.+++
T Consensus 8 ~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~-~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~ 86 (279)
T PRK08508 8 AISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKA-NGALGFCLVTSGRGLDDKKLEYVAEAAKAVKK 86 (279)
T ss_pred EEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH-CCCCEEEEEeccCCCCcccHHHHHHHHHHHHh
Confidence 33334568999999999886421 11 34799999999988655 367788875314411 135678999999998
Q ss_pred CCCCCCCCeEEE-EcCCchh--hHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEE
Q 022752 108 LPFQVSPKRITV-STVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 184 (292)
Q Consensus 108 ~g~~~~~~~i~l-~TNG~~~--~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i 184 (292)
.+ ..+.+ .++|... .+++|.+++ ...+.+.+++. ++.+..+. +..+++++++.++ .+++.|. .+
T Consensus 87 ~~-----p~l~i~~s~G~~~~e~l~~Lk~aG-ld~~~~~lEt~-~~~~~~i~---~~~~~~~~l~~i~-~a~~~Gi--~v 153 (279)
T PRK08508 87 EV-----PGLHLIACNGTASVEQLKELKKAG-IFSYNHNLETS-KEFFPKIC---TTHTWEERFQTCE-NAKEAGL--GL 153 (279)
T ss_pred hC-----CCcEEEecCCCCCHHHHHHHHHcC-CCEEcccccch-HHHhcCCC---CCCCHHHHHHHHH-HHHHcCC--ee
Confidence 64 23333 4788653 256666665 24566777774 56666653 2468999999994 5677775 55
Q ss_pred EEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC--CCCCcCCCcHHHHHHHHHHHH
Q 022752 185 EYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 185 ~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~--~~~~~~~~~~e~l~~~~~~l~ 243 (292)
...++.|.+++.+++.+++.++++++.. +-+..++|.. +.. ..+.+.+++.+..+.++
T Consensus 154 ~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~-~~~~~~~~~lr~iAv~R 214 (279)
T PRK08508 154 CSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPNPALPLK-APTLSADEALEIVRLAK 214 (279)
T ss_pred cceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCC-CCCCCHHHHHHHHHHHH
Confidence 5667778899999999999999999876 5454555653 121 23567777777766665
No 70
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.46 E-value=6.1e-12 Score=119.64 Aligned_cols=179 Identities=16% Similarity=0.312 Sum_probs=121.4
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEecC-----------------CccccC
Q 022752 33 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM-----------------GEPLNN 94 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~-----------------GEPll~ 94 (292)
+...++.++.|||++|.||..+.. +..+..+++++++++...... +.+.|.|+|. |+|+
T Consensus 138 ~~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~-g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~-- 214 (440)
T PRK14862 138 RHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKA-GVKELLVISQDTSAYGVDVKYRTGFWNGRPV-- 214 (440)
T ss_pred CcEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHC-CCceEEEEecChhhhccccccccccccccch--
Confidence 344566778999999999987643 234678899999999886553 6777877742 2333
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEE-EEcCCchhhHHHHhhhCCCc--eEEEEecCCChHHHhhhcCcccCccHHHHHHHH
Q 022752 95 YAALVEAVRIMTGLPFQVSPKRIT-VSTVGIVHAINKFHSDLPGL--NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 171 (292)
Q Consensus 95 ~~~i~ell~~~~~~g~~~~~~~i~-l~TNG~~~~~~~l~~~~~~~--~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l 171 (292)
.+.+.++++.+.+.++ +..+. +.+++...++.+++..+ .+ .+.|++++.+++..+.+. +.++++++++++
T Consensus 215 ~~~~~~Ll~~l~~~~~---~~r~~~~~p~~~~dell~~m~~g-~~~~~l~IglESgs~~vLk~m~---r~~~~~~~~~~i 287 (440)
T PRK14862 215 KTRMTDLCEALGELGA---WVRLHYVYPYPHVDEVIPLMAEG-KILPYLDIPFQHASPRVLKRMK---RPASVEKTLERI 287 (440)
T ss_pred hhHHHHHHHHHHhcCC---EEEEecCCCCcCCHHHHHHHhcC-CCccccccccccCCHHHHHhcC---CCCCHHHHHHHH
Confidence 3578999999998762 12322 34555444444444333 33 566899999999988763 457888999999
Q ss_pred HHHHHhhCCeEEEEEEEeCC-CCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 172 KEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 172 ~~~~~~~~~~v~i~~vl~~g-~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
+.+ ++....+.+.+.++-| -++++++++++.+++.++++. +++.+|.|.+
T Consensus 288 ~~l-r~~~~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~p 339 (440)
T PRK14862 288 KKW-REICPDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVE 339 (440)
T ss_pred HHH-HHHCCCceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCC
Confidence 554 4433333444333322 246889999999999999875 7777787764
No 71
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.45 E-value=3.9e-12 Score=117.26 Aligned_cols=198 Identities=15% Similarity=0.172 Sum_probs=129.6
Q ss_pred EEcCCCCCcCCcCcCCCCCCC---cCCCCHHHHHHHHHHhhccCCcceEEEecCC-ccccCHHHHHHHHHHHhCCCCCCC
Q 022752 38 ISSQVGCKMGCNFCATGTMGF---KSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPLNNYAALVEAVRIMTGLPFQVS 113 (292)
Q Consensus 38 is~t~gCNl~C~yC~~~~~~~---~~~~~~eei~~~i~~~~~~~~~~~I~fsG~G-EPll~~~~i~ell~~~~~~g~~~~ 113 (292)
+..|.+|+.+|.||..+.... ...++++++++.+.+... .++..+.|+| | +|.+..+.+.++++.+++.+.++.
T Consensus 45 i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~-~G~~~i~l~g-G~~p~~~~~~~~~li~~Ik~~~~~i~ 122 (340)
T TIGR03699 45 INYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVA-YGGTQILLQG-GVNPDLGLDYYEDLFRAIKARFPHIH 122 (340)
T ss_pred cccchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHH-cCCcEEEEec-CCCCCCCHHHHHHHHHHHHHHCCCcC
Confidence 445799999999996533221 235899999999887755 4789999999 7 777777888899999998642221
Q ss_pred CCe-------EEEEcCCch-hh-HHHHhhhCCCceEE-EEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEE
Q 022752 114 PKR-------ITVSTVGIV-HA-INKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183 (292)
Q Consensus 114 ~~~-------i~l~TNG~~-~~-~~~l~~~~~~~~l~-iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~ 183 (292)
... ....|||+. .+ ++++.+++. ..+. ...+..+++.++.+.+. +.++++.++.+ +.+++.|.++.
T Consensus 123 ~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~-~~~~~~g~E~~~~~~~~~~~~~--~~s~~~~l~~i-~~a~~~Gi~v~ 198 (340)
T TIGR03699 123 IHSFSPVEIVYIAKKEGLSLREVLERLKEAGL-DSIPGGGAEILSDRVRKIISPK--KISSEEWLEVM-ETAHKLGLPTT 198 (340)
T ss_pred CCCCCHHHHHHHhccCCCCHHHHHHHHHHcCC-CcCCCCcccccCHHHHHhhCCC--CCCHHHHHHHH-HHHHHcCCCcc
Confidence 000 112367865 23 456666542 2222 23455678888877543 36888899999 56778888877
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHhhCCcE----EEEEe--cCCCC-CCCCcCCCcHHHHHHHHHHHH
Q 022752 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVV----VNLIP--FNPIG-SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 184 i~~vl~~g~nd~~~~l~~l~~~l~~~~~~----v~l~p--~~p~~-~~~~~~~~~~e~l~~~~~~l~ 243 (292)
..+++- ..++.+++.+.+.++++++.. ..++| |.|.+ +....++++.++..+..+..+
T Consensus 199 ~~~iiG--lgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~R 263 (340)
T TIGR03699 199 ATMMFG--HVETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISR 263 (340)
T ss_pred ceeEee--CCCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHH
Confidence 655543 456778888899999988653 23345 33432 333445567777666665555
No 72
>PRK15108 biotin synthase; Provisional
Probab=99.44 E-value=3.2e-11 Score=111.18 Aligned_cols=189 Identities=11% Similarity=0.147 Sum_probs=129.1
Q ss_pred cCCCCCcCCcCcCCCCC---CC--cCCCCHHHHHHHHHHhhccCCcceEEEecCC-ccc-cCHHHHHHHHHHHhCCCCCC
Q 022752 40 SQVGCKMGCNFCATGTM---GF--KSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPL-NNYAALVEAVRIMTGLPFQV 112 (292)
Q Consensus 40 ~t~gCNl~C~yC~~~~~---~~--~~~~~~eei~~~i~~~~~~~~~~~I~fsG~G-EPl-l~~~~i~ell~~~~~~g~~~ 112 (292)
.|.+||.+|.||..+.. .. ...++++|+++.+..... .++..+.+.+.| +|. ...+.+.++++.+++.+
T Consensus 49 ~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~-~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~--- 124 (345)
T PRK15108 49 KTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA-AGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMG--- 124 (345)
T ss_pred ECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHH-cCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCC---
Confidence 37999999999987631 11 234899999999887655 478888885513 674 44688999999999766
Q ss_pred CCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeC
Q 022752 113 SPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 190 (292)
Q Consensus 113 ~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~ 190 (292)
..++ .|||.+.. +.+|.+++ ...+.+++++ +++.|.++.+ ..++++.++.++ .+++.|..+... ++=
T Consensus 125 --i~v~-~s~G~ls~e~l~~LkeAG-ld~~n~~leT-~p~~f~~I~~---~~~~~~rl~~i~-~a~~~G~~v~sg--~i~ 193 (345)
T PRK15108 125 --LETC-MTLGTLSESQAQRLANAG-LDYYNHNLDT-SPEFYGNIIT---TRTYQERLDTLE-KVRDAGIKVCSG--GIV 193 (345)
T ss_pred --CEEE-EeCCcCCHHHHHHHHHcC-CCEEeecccc-ChHhcCCCCC---CCCHHHHHHHHH-HHHHcCCceeeE--EEE
Confidence 4555 67997643 56666665 3567899999 7899988864 358999999994 566777755443 334
Q ss_pred CCCChHHHHHHHHHHHhhCCc--E-EEEEecCCCC--CCCCcCCCcHHHHHHHHHHHH
Q 022752 191 GVNDEEQHAHQLGKLLETFQV--V-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 191 g~nd~~~~l~~l~~~l~~~~~--~-v~l~p~~p~~--~~~~~~~~~~e~l~~~~~~l~ 243 (292)
|..++.+++.+++..++.++. . +.+-.+.|.. +..+.++.+..+..+.....+
T Consensus 194 GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~R 251 (345)
T PRK15108 194 GLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVAR 251 (345)
T ss_pred eCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 667788899999999988843 2 4444455542 223333445566555444433
No 73
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.44 E-value=1.4e-11 Score=118.43 Aligned_cols=173 Identities=13% Similarity=0.144 Sum_probs=124.5
Q ss_pred EEEEcCCCCCcCCcCcCCCCC---CCcCCCCHHHHHHHHHHhhcc-CCcceEEEecCCccccCHHHHHHHHHHHhCCCCC
Q 022752 36 LCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRL-SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ 111 (292)
Q Consensus 36 l~is~t~gCNl~C~yC~~~~~---~~~~~~~~eei~~~i~~~~~~-~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~ 111 (292)
+.+.+++||+++|.||..+.. ..-+..+++.+++++...... .++..+.|.+ +.++.+.+++.++++.+++.+
T Consensus 198 ~~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~D-d~f~~~~~~~~~l~~~l~~~~-- 274 (472)
T TIGR03471 198 ISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFDD-DTFTDDKPRAEEIARKLGPLG-- 274 (472)
T ss_pred EEEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeC-CCCCCCHHHHHHHHHHHhhcC--
Confidence 455668999999999976432 123567899999999886543 2678899988 888888888999999998876
Q ss_pred CCCCeEEEEcCCc-hhh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEE-
Q 022752 112 VSPKRITVSTVGI-VHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM- 188 (292)
Q Consensus 112 ~~~~~i~l~TNG~-~~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl- 188 (292)
......+... ..+ +..+.+++ ...+.+.+++.+++..+.+. ++.+.+++.+++ +.++++|+.+...+++
T Consensus 275 ---i~~~~~~~~~~~~e~l~~l~~aG-~~~v~iGiES~s~~~L~~~~---K~~~~~~~~~~i-~~~~~~Gi~v~~~~IiG 346 (472)
T TIGR03471 275 ---VTWSCNARANVDYETLKVMKENG-LRLLLVGYESGDQQILKNIK---KGLTVEIARRFT-RDCHKLGIKVHGTFILG 346 (472)
T ss_pred ---ceEEEEecCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHhc---CCCCHHHHHHHH-HHHHHCCCeEEEEEEEe
Confidence 2333333322 223 34444444 35678999999999988873 456888899999 5678889888777665
Q ss_pred eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 189 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 189 ~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
+|| ++.+++.+.++++.++++. +.+..+.|.
T Consensus 347 lPg--et~e~~~~ti~~~~~l~~~~~~~~~l~P~ 378 (472)
T TIGR03471 347 LPG--ETRETIRKTIDFAKELNPHTIQVSLAAPY 378 (472)
T ss_pred CCC--CCHHHHHHHHHHHHhcCCCceeeeecccC
Confidence 344 6888999999999998764 444444443
No 74
>PLN02389 biotin synthase
Probab=99.44 E-value=3.1e-11 Score=112.25 Aligned_cols=187 Identities=13% Similarity=0.245 Sum_probs=130.1
Q ss_pred CCCCCcCCcCcCCCCC---CC--cCCCCHHHHHHHHHHhhccCCcceEEEe-----cCCccccCHHHHHHHHHHHhCCCC
Q 022752 41 QVGCKMGCNFCATGTM---GF--KSNLSSGEIVEQLVHASRLSNIRNVVFM-----GMGEPLNNYAALVEAVRIMTGLPF 110 (292)
Q Consensus 41 t~gCNl~C~yC~~~~~---~~--~~~~~~eei~~~i~~~~~~~~~~~I~fs-----G~GEPll~~~~i~ell~~~~~~g~ 110 (292)
|.+|+.+|.||..... +. ...++++++++.+.+... .++..+.+. +.|||+. ++.+.++++.+++.+
T Consensus 90 T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~-~G~~~~~ivts~rg~~~e~~~-~e~i~eiir~ik~~~- 166 (379)
T PLN02389 90 TGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKE-AGSTRFCMGAAWRDTVGRKTN-FNQILEYVKEIRGMG- 166 (379)
T ss_pred cCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHH-cCCCEEEEEecccCCCCChhH-HHHHHHHHHHHhcCC-
Confidence 6999999999977431 11 235899999999988665 367776653 2267765 688999999999766
Q ss_pred CCCCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEE
Q 022752 111 QVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 188 (292)
Q Consensus 111 ~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl 188 (292)
..++ .|+|.+.. +.+|.+++ ...+.+++++ .++.|.++.+ ..++++.++.+ +.+++.|.++... +
T Consensus 167 ----l~i~-~s~G~l~~E~l~~LkeAG-ld~~~~~LeT-s~~~y~~i~~---~~s~e~rl~ti-~~a~~~Gi~v~sg--~ 233 (379)
T PLN02389 167 ----MEVC-CTLGMLEKEQAAQLKEAG-LTAYNHNLDT-SREYYPNVIT---TRSYDDRLETL-EAVREAGISVCSG--G 233 (379)
T ss_pred ----cEEE-ECCCCCCHHHHHHHHHcC-CCEEEeeecC-ChHHhCCcCC---CCCHHHHHHHH-HHHHHcCCeEeEE--E
Confidence 4454 67887542 56777765 3557788988 5778887753 35899999999 5567778765544 4
Q ss_pred eCCCCChHHHHHHHHHHHhhCC--cE-EEEEecCCCC--CCCCcCCCcHHHHHHHHHHHH
Q 022752 189 LDGVNDEEQHAHQLGKLLETFQ--VV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 189 ~~g~nd~~~~l~~l~~~l~~~~--~~-v~l~p~~p~~--~~~~~~~~~~e~l~~~~~~l~ 243 (292)
+-|.+++.+++.+.+.++++++ +. +.+.+++|.. +..+.++++.++..+.....+
T Consensus 234 IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~R 293 (379)
T PLN02389 234 IIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATAR 293 (379)
T ss_pred EECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHH
Confidence 4567888899999999998884 33 5555666653 233445567777666555443
No 75
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.43 E-value=2.2e-11 Score=116.47 Aligned_cols=180 Identities=17% Similarity=0.352 Sum_probs=124.1
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEec-----CCccccCHHHHHHHHHHH
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMG-----MGEPLNNYAALVEAVRIM 105 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG-----~GEPll~~~~i~ell~~~ 105 (292)
.+...++.++.|||++|.||..+.. +..+.++++++++++...... ++..|.|+| +|+++...+.+.++++.+
T Consensus 153 ~~~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~-G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l 231 (459)
T PRK14338 153 PPVTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAAR-GAKEITLLGQIVDSYGHDLPGRPDLADLLEAV 231 (459)
T ss_pred CceEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHC-CCeEEEEeeecCCCcccccCChHHHHHHHHHH
Confidence 3467778888999999999987542 234678899999999887653 788999998 366665445688999999
Q ss_pred hCC-CCCCCCCeEEE-EcCCch--hhHHHHhhhCC--CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh-
Q 022752 106 TGL-PFQVSPKRITV-STVGIV--HAINKFHSDLP--GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS- 178 (292)
Q Consensus 106 ~~~-g~~~~~~~i~l-~TNG~~--~~~~~l~~~~~--~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~- 178 (292)
.+. |+ ..+.+ ++|... .++.+++.... ...+.+++++.+++..+.+. +..+.++++++++. +++.
T Consensus 232 ~~~~gi----~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~---R~~t~e~~~~~i~~-lr~~~ 303 (459)
T PRK14338 232 HEIPGL----ERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMR---RGYTVARYRELIAR-IREAI 303 (459)
T ss_pred HhcCCc----ceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhcc---CCCCHHHHHHHHHH-HHHhC
Confidence 885 41 23443 335432 22222332221 13466889999999998874 34688999999955 4444
Q ss_pred -CCeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 179 -QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 179 -~~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
+..+...+++ +|| ++.+++++.++++.++++. +++.+|.|.+
T Consensus 304 pgi~i~~d~IvG~Pg--ET~ed~~~ti~~l~~l~~~~v~i~~ysp~p 348 (459)
T PRK14338 304 PDVSLTTDIIVGHPG--ETEEQFQRTYDLLEEIRFDKVHIAAYSPRP 348 (459)
T ss_pred CCCEEEEEEEEECCC--CCHHHHHHHHHHHHHcCCCEeEEEecCCCC
Confidence 4433333333 344 6889999999999999875 7788888754
No 76
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.43 E-value=1.1e-11 Score=114.47 Aligned_cols=196 Identities=16% Similarity=0.162 Sum_probs=131.7
Q ss_pred EEEcCCCCCcCCcCcCCCCCCC---cCCCCHHHHHHHHHHhhccCCcceEEEecCC-ccccCHHHHHHHHHHHhCCCCCC
Q 022752 37 CISSQVGCKMGCNFCATGTMGF---KSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPLNNYAALVEAVRIMTGLPFQV 112 (292)
Q Consensus 37 ~is~t~gCNl~C~yC~~~~~~~---~~~~~~eei~~~i~~~~~~~~~~~I~fsG~G-EPll~~~~i~ell~~~~~~g~~~ 112 (292)
.+..|.+|+.+|.||..+.... ...++++++++.+.++.. .++..|.|+| | +|.+..+.+.++++.+++.+.+
T Consensus 42 ~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~-~G~~~i~l~g-G~~p~~~~~~~~~i~~~Ik~~~~~- 118 (343)
T TIGR03551 42 NINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWK-AGATEVCIQG-GIHPDLDGDFYLDILRAVKEEVPG- 118 (343)
T ss_pred ccccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHH-CCCCEEEEEe-CCCCCCCHHHHHHHHHHHHHHCCC-
Confidence 4666899999999997753221 134899999999988766 4889999998 7 7777888889999999987422
Q ss_pred CCCeEEEE----------cCCchhh--HHHHhhhCCCceEE-EEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhC
Q 022752 113 SPKRITVS----------TVGIVHA--INKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 179 (292)
Q Consensus 113 ~~~~i~l~----------TNG~~~~--~~~l~~~~~~~~l~-iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~ 179 (292)
+++... ++|.... +++|.+++. ..+. .+.+..+++.++.+.+. +.++++.++.+ +.+++.|
T Consensus 119 --i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl-~~i~~~~~E~~~~~v~~~i~~~--~~~~~~~~~~i-~~a~~~G 192 (343)
T TIGR03551 119 --MHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGL-DSMPGTAAEILDDEVRKVICPD--KLSTAEWIEII-KTAHKLG 192 (343)
T ss_pred --ceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCc-ccccCcchhhcCHHHHHhcCCC--CCCHHHHHHHH-HHHHHcC
Confidence 344432 4665432 567777652 2333 34566778888888643 34788889999 6778888
Q ss_pred CeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE----EEEEecC--CCC-CCC----CcCCCcHHHHHHHHHHHH
Q 022752 180 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV----VNLIPFN--PIG-SVS----QFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 180 ~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~----v~l~p~~--p~~-~~~----~~~~~~~e~l~~~~~~l~ 243 (292)
.++...++ -|..++.++..+.+.++++++.. ..++|++ |.+ +.. ..++.+.++..+....++
T Consensus 193 i~v~s~~i--~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~R 265 (343)
T TIGR03551 193 IPTTATIM--YGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIAR 265 (343)
T ss_pred CcccceEE--EecCCCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHH
Confidence 87655443 35557888999999999987653 2234433 322 211 113346777766655544
No 77
>PRK05481 lipoyl synthase; Provisional
Probab=99.42 E-value=3.8e-11 Score=108.07 Aligned_cols=203 Identities=15% Similarity=0.171 Sum_probs=137.1
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhccCCcceEEEecCCc----cccCHHHHHHHHHHHhCC
Q 022752 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE----PLNNYAALVEAVRIMTGL 108 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE----Pll~~~~i~ell~~~~~~ 108 (292)
+..-|+.++.||+.+|.||..+... ++.++++++++++.+... .|++.|.|+| |+ |....+.+.++++.+++.
T Consensus 52 ~~~~fi~is~GC~~~C~FC~i~~~r-~~s~~~eeI~~ea~~l~~-~G~kEI~L~g-g~~~d~~~~~~~~l~~Ll~~I~~~ 128 (289)
T PRK05481 52 GTATFMILGDICTRRCPFCDVATGR-PLPLDPDEPERVAEAVAR-MGLKYVVITS-VDRDDLPDGGAQHFAETIRAIREL 128 (289)
T ss_pred CeEEEEEecccccCCCCCceeCCCC-CCCCCHHHHHHHHHHHHH-CCCCEEEEEE-eeCCCcccccHHHHHHHHHHHHhh
Confidence 3455555689999999999776543 356889999999998765 4889999999 87 333345788999999874
Q ss_pred CCCCCCCeEEEEcC-Cc--hhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEE
Q 022752 109 PFQVSPKRITVSTV-GI--VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 185 (292)
Q Consensus 109 g~~~~~~~i~l~TN-G~--~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~ 185 (292)
. +...+.+.|. .. ...+.++.+++. .+.-..+...+++++.+.+ +.+.++.++.++ .+++.-..+.+.
T Consensus 129 ~---p~irI~~l~~~~~~~~e~L~~l~~ag~--~i~~~~~ets~~vlk~m~r---~~t~e~~le~i~-~ar~~~pgi~~~ 199 (289)
T PRK05481 129 N---PGTTIEVLIPDFRGRMDALLTVLDARP--DVFNHNLETVPRLYKRVRP---GADYERSLELLK-RAKELHPGIPTK 199 (289)
T ss_pred C---CCcEEEEEccCCCCCHHHHHHHHhcCc--ceeeccccChHHHHHHhCC---CCCHHHHHHHHH-HHHHhCCCCeEe
Confidence 1 1144555553 21 123445555542 2221222234678877753 478999999994 455551124455
Q ss_pred EEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCc---CCCcHHHHHHHHHHHHhcCCeE
Q 022752 186 YIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQF---RTSSDDKVSSFQKILRGSYNIR 249 (292)
Q Consensus 186 ~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~---~~~~~e~l~~~~~~l~~~~g~~ 249 (292)
+.++-|+.++++++.+..+++.++++. +.+.+|-|. ....+ .....++.+++.++.. ..|+.
T Consensus 200 t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~p-a~k~~~v~~~~k~~r~~~l~~~~~-~i~~~ 265 (289)
T PRK05481 200 SGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQP-SRKHLPVERYVTPEEFDEYKEIAL-ELGFL 265 (289)
T ss_pred eeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCCC-ccccCCCCCcCCHHHHHHHHHHHH-HcCch
Confidence 555667789999999999999999987 888888772 12122 2346778888888888 68874
No 78
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.42 E-value=2.4e-11 Score=110.61 Aligned_cols=197 Identities=17% Similarity=0.175 Sum_probs=131.3
Q ss_pred EEEEcCCCCCcCCcCcCCCCCCC---cCCCCHHHHHHHHHHhhccCCcceEEEecCC-ccccCHHHHHHHHHHHhCCCCC
Q 022752 36 LCISSQVGCKMGCNFCATGTMGF---KSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPLNNYAALVEAVRIMTGLPFQ 111 (292)
Q Consensus 36 l~is~t~gCNl~C~yC~~~~~~~---~~~~~~eei~~~i~~~~~~~~~~~I~fsG~G-EPll~~~~i~ell~~~~~~g~~ 111 (292)
.+|..|++|+.+|.||..+.... ...++++++++.+.+... .++..|.|+| | .|....+.+.++++.+++.+.+
T Consensus 7 ~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~-~G~~~i~l~g-g~~~~~~~~~~~~i~~~Ik~~~~~ 84 (309)
T TIGR00423 7 RNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVA-KGATEVCIQG-GLNPQLDIEYYEELFRAIKQEFPD 84 (309)
T ss_pred eeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHH-CCCCEEEEec-CCCCCCCHHHHHHHHHHHHHHCCC
Confidence 45566899999999997753221 246899999999987665 3789999998 8 5767788899999999987421
Q ss_pred CCCCeEEEE----------cCCch-hh-HHHHhhhCCCceEE-EEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh
Q 022752 112 VSPKRITVS----------TVGIV-HA-INKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178 (292)
Q Consensus 112 ~~~~~i~l~----------TNG~~-~~-~~~l~~~~~~~~l~-iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~ 178 (292)
.++... +.|.. .+ +++|.+++. ..+. ++.+..+++.++.+.+. +.+.++.++.+ +.+++.
T Consensus 85 ---i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl-~~i~~~g~E~l~~~~~~~i~~~--~~t~~~~l~~i-~~a~~~ 157 (309)
T TIGR00423 85 ---VHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGL-DSMPGTGAEILDDSVRRKICPN--KLSSDEWLEVI-KTAHRL 157 (309)
T ss_pred ---ceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCC-CcCCCCcchhcCHHHHHhhCCC--CCCHHHHHHHH-HHHHHc
Confidence 333322 34543 23 556666652 3343 47777888888888643 35778888888 567788
Q ss_pred CCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE------EEEEecCCCC-C-CCC--cCCCcHHHHHHHHHHHH
Q 022752 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV------VNLIPFNPIG-S-VSQ--FRTSSDDKVSSFQKILR 243 (292)
Q Consensus 179 ~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~------v~l~p~~p~~-~-~~~--~~~~~~e~l~~~~~~l~ 243 (292)
|.++...+++ |..++.++..+.+.++++++.. +-.+||.|.+ + ... .++++.++..+..+.++
T Consensus 158 Gi~~~s~~ii--G~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~R 230 (309)
T TIGR00423 158 GIPTTATMMF--GHVENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISR 230 (309)
T ss_pred CCCceeeEEe--cCCCCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHH
Confidence 8877654433 4556788888888889887643 2223444532 2 222 25567777666655554
No 79
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.42 E-value=6.2e-11 Score=110.65 Aligned_cols=178 Identities=15% Similarity=0.164 Sum_probs=118.2
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCCCcCCC---CHHHHHHHHHHhhccCCcceEEEecCCcccc-CHHHHHHHHHHHhCCC
Q 022752 34 STLCISSQVGCKMGCNFCATGTMGFKSNL---SSGEIVEQLVHASRLSNIRNVVFMGMGEPLN-NYAALVEAVRIMTGLP 109 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~~~~~~---~~eei~~~i~~~~~~~~~~~I~fsG~GEPll-~~~~i~ell~~~~~~g 109 (292)
..||+.+ .-|+.+|.||........... ..+.+++++........+..|.|.| |+|++ +.+.+.++++.+++.+
T Consensus 4 ~~lYiHi-PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gG-Gtps~l~~~~l~~L~~~i~~~~ 81 (374)
T PRK05799 4 ISLYIHI-PFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGG-GTPTYLSLEALEILKETIKKLN 81 (374)
T ss_pred eEEEEEe-CCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECC-CcccCCCHHHHHHHHHHHHhCC
Confidence 4667765 779999999987543221111 2455566654332223467899999 99995 6666777777776543
Q ss_pred CCCCCCeEEEEcCCch--hh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-EEEE
Q 022752 110 FQVSPKRITVSTVGIV--HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIE 185 (292)
Q Consensus 110 ~~~~~~~i~l~TNG~~--~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v~i~ 185 (292)
.. ....+++.+|... .+ +..+.+.+ ...+.|.+++.+++..+.+. +..+.+++++++ +.+++.|.. +.+.
T Consensus 82 ~~-~~~eitie~~p~~~t~e~l~~l~~~G-~~rvsiGvqS~~d~~L~~l~---R~~~~~~~~~ai-~~l~~~g~~~v~~d 155 (374)
T PRK05799 82 KK-EDLEFTVEGNPGTFTEEKLKILKSMG-VNRLSIGLQAWQNSLLKYLG---RIHTFEEFLENY-KLARKLGFNNINVD 155 (374)
T ss_pred CC-CCCEEEEEeCCCcCCHHHHHHHHHcC-CCEEEEECccCCHHHHHHcC---CCCCHHHHHHHH-HHHHHcCCCcEEEE
Confidence 11 1257899999743 23 34444443 35688999999999988773 346899999999 566777654 5554
Q ss_pred EEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 186 YIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 186 ~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
+++ +| +++.+++.+.++++.++++. +.+.++.+.
T Consensus 156 li~GlP--gqt~e~~~~~l~~~~~l~~~~is~y~l~~~ 191 (374)
T PRK05799 156 LMFGLP--NQTLEDWKETLEKVVELNPEHISCYSLIIE 191 (374)
T ss_pred eecCCC--CCCHHHHHHHHHHHHhcCCCEEEEeccEec
Confidence 433 24 46788999999999998865 666555543
No 80
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.42 E-value=1.9e-11 Score=113.68 Aligned_cols=198 Identities=13% Similarity=0.136 Sum_probs=131.4
Q ss_pred EEEEcCCCCCcCCcCcCCCCC-CC-cCCCCHHHHHHHHHHhhccCCcceEEEecCCccc--cCHHHHHHHHHHHhCCCCC
Q 022752 36 LCISSQVGCKMGCNFCATGTM-GF-KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL--NNYAALVEAVRIMTGLPFQ 111 (292)
Q Consensus 36 l~is~t~gCNl~C~yC~~~~~-~~-~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPl--l~~~~i~ell~~~~~~g~~ 111 (292)
..++.|..||.+|.||..... .. ...++.+++.+.+..+.. .++..|.++| ||+. +..+.+.++++.+++..
T Consensus 75 ~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~-~Gv~~i~lvg-Ge~p~~~~~e~l~eii~~Ik~~~-- 150 (366)
T TIGR02351 75 TPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKK-SGFKEILLVT-GESEKAAGVEYIAEAIKLAREYF-- 150 (366)
T ss_pred eeeeECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHh-CCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhC--
Confidence 345678999999999977421 11 245789999999888765 3789999888 8744 44678999999998752
Q ss_pred CCCCeEEEEcCCch-hhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeC
Q 022752 112 VSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 190 (292)
Q Consensus 112 ~~~~~i~l~TNG~~-~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~ 190 (292)
..+.+..+-.. ....+|.+++ ...+.+++++.+++.|..+.+.....++++.++++ +.+++.|.. .+.+.++-
T Consensus 151 ---p~i~Iei~~lt~e~~~~Lk~aG-v~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i-~~a~~aG~~-~v~~g~i~ 224 (366)
T TIGR02351 151 ---SSLAIEVQPLNEEEYKKLVEAG-LDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTP-ERAAKAGMR-KIGIGALL 224 (366)
T ss_pred ---CccccccccCCHHHHHHHHHcC-CCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHH-HHHHHcCCC-eeceeEEE
Confidence 11222222222 2256777766 35788999999999999987555567899999999 456666764 24456677
Q ss_pred CCCChHHHHHHHHHHHhhCCc-------EEEEEecCCCC-CCCCcCCCcHHHHHHHHHHHH
Q 022752 191 GVNDEEQHAHQLGKLLETFQV-------VVNLIPFNPIG-SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 191 g~nd~~~~l~~l~~~l~~~~~-------~v~l~p~~p~~-~~~~~~~~~~e~l~~~~~~l~ 243 (292)
|++++..+..+++..++.++. .|.+.-++|.. +.....+.+..++.+....++
T Consensus 225 Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R 285 (366)
T TIGR02351 225 GLDDWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNGLKPKVIVTDRELVQIICAYR 285 (366)
T ss_pred eCchhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCCCCCCCCcCCHHHHHHHHHHHH
Confidence 888888888787777665533 23332244442 222334456666665544444
No 81
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.42 E-value=3.8e-11 Score=111.54 Aligned_cols=177 Identities=15% Similarity=0.153 Sum_probs=117.7
Q ss_pred EEEEEcCCCCCcCCcCcCCCCCCCcCCC---CHHHHHHHHHHhhc-c--CCcceEEEecCCcccc-CHHHHHHHHHHHhC
Q 022752 35 TLCISSQVGCKMGCNFCATGTMGFKSNL---SSGEIVEQLVHASR-L--SNIRNVVFMGMGEPLN-NYAALVEAVRIMTG 107 (292)
Q Consensus 35 ~l~is~t~gCNl~C~yC~~~~~~~~~~~---~~eei~~~i~~~~~-~--~~~~~I~fsG~GEPll-~~~~i~ell~~~~~ 107 (292)
+||+.+ .-|+.+|.||+.......... -.+.+.+++..... . ..+..|.|.| |+|++ ..+.+.++++.+++
T Consensus 2 ~lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GG-GtPs~l~~~~l~~ll~~i~~ 79 (360)
T TIGR00539 2 SLYIHI-PFCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGG-GTPNTLSVEAFERLFESIYQ 79 (360)
T ss_pred EEEEEe-CCCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCC-CchhcCCHHHHHHHHHHHHH
Confidence 355554 789999999987433211111 12233334433211 1 2378999999 99985 46788888888875
Q ss_pred CCCCC-CCCeEEEEcCCchh--h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-E
Q 022752 108 LPFQV-SPKRITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-I 182 (292)
Q Consensus 108 ~g~~~-~~~~i~l~TNG~~~--~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v 182 (292)
. +++ ....+++.||+... + +..+.+.+ ...+.|++++.+++..+.+. +..+++++++++ +.+++.|.. +
T Consensus 80 ~-~~~~~~~eitie~np~~lt~e~l~~l~~~G-v~risiGvqS~~~~~l~~lg---R~~~~~~~~~ai-~~l~~~G~~~v 153 (360)
T TIGR00539 80 H-ASLSDDCEITTEANPELITAEWCKGLKGAG-INRLSLGVQSFRDDKLLFLG---RQHSAKNIAPAI-ETALKSGIENI 153 (360)
T ss_pred h-CCCCCCCEEEEEeCCCCCCHHHHHHHHHcC-CCEEEEecccCChHHHHHhC---CCCCHHHHHHHH-HHHHHcCCCeE
Confidence 4 221 23689999998543 2 34444443 45688999999999998873 346899999999 567777763 5
Q ss_pred EEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 183 FIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 183 ~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
.+.+++ +|+ ++.+++.+.++++.++++. +.+.++.|.
T Consensus 154 ~~dli~GlPg--qt~~~~~~~l~~~~~l~~~~is~y~l~~~ 192 (360)
T TIGR00539 154 SLDLMYGLPL--QTLNSLKEELKLAKELPINHLSAYALSVE 192 (360)
T ss_pred EEeccCCCCC--CCHHHHHHHHHHHHccCCCEEEeecceEc
Confidence 554443 344 6788999999999999875 777666654
No 82
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.41 E-value=7e-11 Score=112.96 Aligned_cols=178 Identities=11% Similarity=0.138 Sum_probs=122.8
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCCCC-cCCC---CHHHHHHHHHHhhc----cCCcceEEEecCCcccc-CHHHHHHHH
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTMGF-KSNL---SSGEIVEQLVHASR----LSNIRNVVFMGMGEPLN-NYAALVEAV 102 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~~~-~~~~---~~eei~~~i~~~~~----~~~~~~I~fsG~GEPll-~~~~i~ell 102 (292)
....|++.+ .-|+.+|.||....... .... ..+.+++++..... ...+..|.|.| |+|++ +.+.+.+++
T Consensus 48 ~~~~LYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gG-GtPs~l~~~~l~~ll 125 (453)
T PRK09249 48 RPLSLYVHI-PFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGG-GTPTFLSPEQLRRLM 125 (453)
T ss_pred CceEEEEEe-CCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECC-cccccCCHHHHHHHH
Confidence 446777776 78999999997643211 1111 12445555553322 12478999999 99996 578899999
Q ss_pred HHHhCCCCCC-CCCeEEEEcCCchh--h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh
Q 022752 103 RIMTGLPFQV-SPKRITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178 (292)
Q Consensus 103 ~~~~~~g~~~-~~~~i~l~TNG~~~--~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~ 178 (292)
+.+++. +++ ....+++.||+... + +..+.+.+ ...+.|++++.+++..+.+. +..+.+++++++ +.+++.
T Consensus 126 ~~l~~~-~~~~~~~e~tie~np~~lt~e~l~~l~~aG-~~risiGvqS~~~~~L~~l~---r~~~~~~~~~ai-~~l~~~ 199 (453)
T PRK09249 126 ALLREH-FNFAPDAEISIEIDPRELDLEMLDALRELG-FNRLSLGVQDFDPEVQKAVN---RIQPFEFTFALV-EAAREL 199 (453)
T ss_pred HHHHHh-CCCCCCCEEEEEecCCcCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHhC---CCCCHHHHHHHH-HHHHHc
Confidence 999875 222 12579999998432 2 34444443 45688999999999988874 346889999999 556677
Q ss_pred CC-eEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecC
Q 022752 179 QQ-KIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFN 219 (292)
Q Consensus 179 ~~-~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~ 219 (292)
|. .+.+.+++ +|+ ++.+++++.++++.++++. +.+.++.
T Consensus 200 G~~~v~~dli~GlPg--qt~e~~~~~l~~~~~l~~~~i~~y~l~ 241 (453)
T PRK09249 200 GFTSINIDLIYGLPK--QTPESFARTLEKVLELRPDRLAVFNYA 241 (453)
T ss_pred CCCcEEEEEEccCCC--CCHHHHHHHHHHHHhcCCCEEEEccCc
Confidence 76 45555443 355 5778999999999999876 7777665
No 83
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.40 E-value=9.7e-11 Score=111.93 Aligned_cols=181 Identities=13% Similarity=0.141 Sum_probs=123.5
Q ss_pred CCCCceEEEEEcCCCCCcCCcCcCCCCCCC-cCCCC---HHHHHHHHHHhhcc----CCcceEEEecCCcccc-CHHHHH
Q 022752 29 PGGPRSTLCISSQVGCKMGCNFCATGTMGF-KSNLS---SGEIVEQLVHASRL----SNIRNVVFMGMGEPLN-NYAALV 99 (292)
Q Consensus 29 ~~~~r~~l~is~t~gCNl~C~yC~~~~~~~-~~~~~---~eei~~~i~~~~~~----~~~~~I~fsG~GEPll-~~~~i~ 99 (292)
++....+|++.+ .-|+.+|.||....... ..... .+.+++++...... ..+..|.|.| |+|++ ..+.+.
T Consensus 46 ~~~~~~~LYvHI-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgG-GTPs~l~~~~l~ 123 (453)
T PRK13347 46 GPEEPVSLYLHV-PFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGG-GTPTILNPDQFE 123 (453)
T ss_pred cCCCceEEEEEe-CCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcC-cccccCCHHHHH
Confidence 355567888887 56999999997643211 11111 23445555432221 2468899999 99995 578899
Q ss_pred HHHHHHhCCCCCC-CCCeEEEEcCCchh--h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHH
Q 022752 100 EAVRIMTGLPFQV-SPKRITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175 (292)
Q Consensus 100 ell~~~~~~g~~~-~~~~i~l~TNG~~~--~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~ 175 (292)
++++.+++. +++ ....+++.||.... + +..+.+.+ ...+.|++++.+++..+.+. +..+.+++++++ +.+
T Consensus 124 ~ll~~i~~~-~~~~~~~e~tie~~p~~lt~e~l~~L~~~G-~~rvsiGvQS~~~~vl~~l~---R~~~~~~~~~ai-~~l 197 (453)
T PRK13347 124 RLMAALRDA-FDFAPEAEIAVEIDPRTVTAEMLQALAALG-FNRASFGVQDFDPQVQKAIN---RIQPEEMVARAV-ELL 197 (453)
T ss_pred HHHHHHHHh-CCCCCCceEEEEeccccCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHhC---CCCCHHHHHHHH-HHH
Confidence 999999875 222 12578899997432 2 33444443 45678999999999998874 346899999999 566
Q ss_pred HhhCCe-EEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecC
Q 022752 176 KNSQQK-IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFN 219 (292)
Q Consensus 176 ~~~~~~-v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~ 219 (292)
++.|.. +.+.+++ +|+ ++.+++.+.++++.++++. +.+.++.
T Consensus 198 r~~G~~~v~~dli~GlPg--qt~e~~~~tl~~~~~l~p~~i~~y~l~ 242 (453)
T PRK13347 198 RAAGFESINFDLIYGLPH--QTVESFRETLDKVIALSPDRIAVFGYA 242 (453)
T ss_pred HhcCCCcEEEeEEEeCCC--CCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 777754 5555444 455 5788999999999999875 7666653
No 84
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.40 E-value=2.5e-11 Score=111.77 Aligned_cols=194 Identities=14% Similarity=0.165 Sum_probs=119.5
Q ss_pred EEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCcc-ccCH------------HHHHHH
Q 022752 36 LCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEP-LNNY------------AALVEA 101 (292)
Q Consensus 36 l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEP-ll~~------------~~i~el 101 (292)
.++..|++||.+|.||..... +....++++++++++.+.... ++..+.|+| ||+ .+.+ ..+.+.
T Consensus 14 ~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~-G~~ei~l~g-G~~p~~~~~~~~~~~~~~g~~~~~~~ 91 (336)
T PRK06245 14 VFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADA-GCTEALFTF-GEVPDESYERIKEQLAEMGYSSILEY 91 (336)
T ss_pred eeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHC-CCCEEEEec-CCCCccchhhhhhhhhhhhHHHHHHH
Confidence 345568999999999976432 223478999999999987664 889999999 998 3331 223444
Q ss_pred HHH----HhCCCCCCCCCeEEEEcCCc-h-hh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHH
Q 022752 102 VRI----MTGLPFQVSPKRITVSTVGI-V-HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174 (292)
Q Consensus 102 l~~----~~~~g~~~~~~~i~l~TNG~-~-~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~ 174 (292)
++. +++.+ ... .+|.. + .+ +..+.+.+ .++.+++++.++...+.+.+...+.++++.++.+ +.
T Consensus 92 i~~i~~~~~~~g-----~~~--~~~~~~lt~e~i~~Lk~ag--~~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i-~~ 161 (336)
T PRK06245 92 LYDLCELALEEG-----LLP--HTNAGILTREEMEKLKEVN--ASMGLMLEQTSPRLLNTVHRGSPGKDPELRLETI-EN 161 (336)
T ss_pred HHHHHHHHhhcC-----CCc--cccCCCCCHHHHHHHHHhC--CCCCCCccccchhhHHhhccCCCCCCHHHHHHHH-HH
Confidence 433 33333 222 34432 2 22 44444432 4455677888888775542222334677888888 45
Q ss_pred HHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCC-----cE-EEEEecCCCC--CCCCcCCCcHHHHHHHHHHHH
Q 022752 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-----VV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 175 ~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~-----~~-v~l~p~~p~~--~~~~~~~~~~e~l~~~~~~l~ 243 (292)
+.+.|.++...++ =|..++.+++.+.++.+.++. +. +.+.+|.|.+ +......++.+++.++.+..+
T Consensus 162 a~~~Gi~~~~~~i--~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~R 236 (336)
T PRK06245 162 AGKLKIPFTTGIL--IGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALAR 236 (336)
T ss_pred HHHcCCceeeeee--eECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHH
Confidence 6666776543333 345677788888666666653 33 6677888874 222445667777776555444
No 85
>PRK06267 hypothetical protein; Provisional
Probab=99.39 E-value=9.1e-11 Score=108.43 Aligned_cols=191 Identities=16% Similarity=0.245 Sum_probs=132.2
Q ss_pred EEEcCCCCC--cCCcCcCCCCCC------CcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCC
Q 022752 37 CISSQVGCK--MGCNFCATGTMG------FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 108 (292)
Q Consensus 37 ~is~t~gCN--l~C~yC~~~~~~------~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~ 108 (292)
.+..+.+|| .+|.||..+... ....++++++++++..+... +++.+.++| |+++. .+.+.++++.+++.
T Consensus 30 ~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~-Gv~~~~lsg-G~~~~-~~el~~i~e~I~~~ 106 (350)
T PRK06267 30 ALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRI-GWKLEFISG-GYGYT-TEEINDIAEMIAYI 106 (350)
T ss_pred eeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHc-CCCEEEEec-CCCCC-HHHHHHHHHHHHHh
Confidence 334579999 789999775321 12357899999999876653 677888999 99955 57788999988776
Q ss_pred CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEE
Q 022752 109 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 188 (292)
Q Consensus 109 g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl 188 (292)
. ...+.+.. |... ...+... ....+...+++.+++.+..+.+ ..++++.++.+ +.+++.|.++...+++
T Consensus 107 ~----~~~~~~s~-G~~d-~~~~~~~-~l~Gv~g~~ET~~~~~~~~i~~---~~s~ed~~~~l-~~ak~aGi~v~~g~Ii 175 (350)
T PRK06267 107 Q----GCKQYLNV-GIID-FLNINLN-EIEGVVGAVETVNPKLHREICP---GKPLDKIKEML-LKAKDLGLKTGITIIL 175 (350)
T ss_pred h----CCceEeec-ccCC-HHHHhhc-cccCceeeeecCCHHHHHhhCC---CCCHHHHHHHH-HHHHHcCCeeeeeEEE
Confidence 2 12344443 3322 1222111 1233456788999999988864 36899999999 5677888887666555
Q ss_pred eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC--CCCCcCCCcHHHHHHHHHHHH
Q 022752 189 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 189 ~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~--~~~~~~~~~~e~l~~~~~~l~ 243 (292)
|..++.+++.++++++.++++. +.+.++.|.+ +..+.++++.+++.++...++
T Consensus 176 --GlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~R 231 (350)
T PRK06267 176 --GLGETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVR 231 (350)
T ss_pred --eCCCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHH
Confidence 3456788999999999999876 6666676653 234456678888887766655
No 86
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.39 E-value=8e-11 Score=108.91 Aligned_cols=202 Identities=16% Similarity=0.182 Sum_probs=128.8
Q ss_pred EEEEEcCCCCCcCCcCcCCCCCCCcCCC---CHHHHHHHHHHhhc---cCCcceEEEecCCccc-cCHHHHHHHHHHHhC
Q 022752 35 TLCISSQVGCKMGCNFCATGTMGFKSNL---SSGEIVEQLVHASR---LSNIRNVVFMGMGEPL-NNYAALVEAVRIMTG 107 (292)
Q Consensus 35 ~l~is~t~gCNl~C~yC~~~~~~~~~~~---~~eei~~~i~~~~~---~~~~~~I~fsG~GEPl-l~~~~i~ell~~~~~ 107 (292)
.||+.+ .-|+.+|.||........... ..+.+++++..... ...+..|.|.| |+|+ +.++.+.++++.+++
T Consensus 2 ~lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGG-GTPs~l~~~~l~~ll~~i~~ 79 (350)
T PRK08446 2 LLYIHI-PFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGG-GTPSTVSAKFYEPIFEIISP 79 (350)
T ss_pred eEEEEe-CCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECC-CccccCCHHHHHHHHHHHHH
Confidence 345544 789999999976533211111 23455555553321 12578999999 9997 567778888888876
Q ss_pred CCCCCCCCeEEEEcCCchh--h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-EE
Q 022752 108 LPFQVSPKRITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IF 183 (292)
Q Consensus 108 ~g~~~~~~~i~l~TNG~~~--~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v~ 183 (292)
. +. ....+++.+|.... + +..+.+.+ ...+.|.+++.+++..+.+. +..+.+++++++ +.+++.|.. +.
T Consensus 80 ~-~~-~~~eitiE~nP~~~~~e~l~~l~~~G-vnRiSiGvQS~~~~~L~~lg---R~~~~~~~~~ai-~~lr~~g~~~v~ 152 (350)
T PRK08446 80 Y-LS-KDCEITTEANPNSATKAWLKGMKNLG-VNRISFGVQSFNEDKLKFLG---RIHSQKQIIKAI-ENAKKAGFENIS 152 (350)
T ss_pred h-cC-CCceEEEEeCCCCCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHcC---CCCCHHHHHHHH-HHHHHcCCCEEE
Confidence 4 11 12679999998532 2 33444443 45688999999999888773 446889999999 566677753 55
Q ss_pred EEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCc-----CCCcH-HHHHHHHHHHHhcCCeE
Q 022752 184 IEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQF-----RTSSD-DKVSSFQKILRGSYNIR 249 (292)
Q Consensus 184 i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~-----~~~~~-e~l~~~~~~l~~~~g~~ 249 (292)
+.+++ +|| .+.+++.+.++++.++++. +.+.++.+.. .+.+ ..++. +-+..+.+.|. +.|+.
T Consensus 153 iDli~GlPg--qt~~~~~~~l~~~~~l~~~~is~y~L~~~~-gT~l~~~~~~~~~~~~~~~~~~~~l~-~~Gy~ 222 (350)
T PRK08446 153 IDLIYDTPL--DNKKLLKEELKLAKELPINHLSAYSLTIEE-NTPFFEKNHKKKDDENLAKFFIEQLE-ELGFK 222 (350)
T ss_pred EEeecCCCC--CCHHHHHHHHHHHHhcCCCEEEeccceecC-CChhHHhhhcCCCHHHHHHHHHHHHH-HCCCc
Confidence 55544 355 5678899999999998876 6666665532 1111 12233 33445566777 56663
No 87
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.38 E-value=1e-10 Score=111.94 Aligned_cols=178 Identities=11% Similarity=0.197 Sum_probs=123.8
Q ss_pred CCceEEEEEcCCCCCcCCcCcCCCCCCC-cCCC---CHHHHHHHHHHhhcc----CCcceEEEecCCcccc-CHHHHHHH
Q 022752 31 GPRSTLCISSQVGCKMGCNFCATGTMGF-KSNL---SSGEIVEQLVHASRL----SNIRNVVFMGMGEPLN-NYAALVEA 101 (292)
Q Consensus 31 ~~r~~l~is~t~gCNl~C~yC~~~~~~~-~~~~---~~eei~~~i~~~~~~----~~~~~I~fsG~GEPll-~~~~i~el 101 (292)
+....||+.+ .-|+.+|.||....... .... ..+.+++++...... .++..|.|.| |+|++ ..+.+.++
T Consensus 47 ~~~~~lYiHi-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgG-GtP~~l~~~~l~~l 124 (455)
T TIGR00538 47 KTPLSLYVHI-PFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGG-GTPTYLSPEQISRL 124 (455)
T ss_pred CCceEEEEEe-CCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECC-CCcCCCCHHHHHHH
Confidence 3446788876 78999999998754321 1111 245566666543221 3578999999 99995 67899999
Q ss_pred HHHHhCCCCCC-CCCeEEEEcCCchh--h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHh
Q 022752 102 VRIMTGLPFQV-SPKRITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177 (292)
Q Consensus 102 l~~~~~~g~~~-~~~~i~l~TNG~~~--~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~ 177 (292)
++.+++. +.+ ....+++.+|+... + +..+.+.+ ...+.|++++.+++..+.+.+ ..+.+++++++ +.+++
T Consensus 125 l~~i~~~-~~~~~~~eitie~np~~l~~e~l~~lk~~G-~~risiGvqS~~~~~l~~l~r---~~~~~~~~~ai-~~l~~ 198 (455)
T TIGR00538 125 MKLIREN-FPFNADAEISIEIDPRYITKDVIDALRDEG-FNRLSFGVQDFNKEVQQAVNR---IQPEEMIFELM-NHARE 198 (455)
T ss_pred HHHHHHh-CCCCCCCeEEEEeccCcCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHhCC---CCCHHHHHHHH-HHHHh
Confidence 9999875 221 12578999998532 2 34444443 456889999999999988743 46788999999 56677
Q ss_pred hCCe-EEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEec
Q 022752 178 SQQK-IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPF 218 (292)
Q Consensus 178 ~~~~-v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~ 218 (292)
.|.. +.+.+++ +|+ ++.+++.+.++++.++++. +.+.++
T Consensus 199 ~G~~~v~~dli~GlPg--qt~e~~~~tl~~~~~l~~~~is~y~L 240 (455)
T TIGR00538 199 AGFTSINIDLIYGLPK--QTKESFAKTLEKVAELNPDRLAVFNY 240 (455)
T ss_pred cCCCcEEEeEEeeCCC--CCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 7764 4555443 355 6788999999999999875 776666
No 88
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.38 E-value=1.3e-10 Score=108.51 Aligned_cols=178 Identities=10% Similarity=0.114 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHH----HHHHHHHhh---ccCCcceEEEecCCccccC-HHHHHHHHHHH
Q 022752 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGE----IVEQLVHAS---RLSNIRNVVFMGMGEPLNN-YAALVEAVRIM 105 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~ee----i~~~i~~~~---~~~~~~~I~fsG~GEPll~-~~~i~ell~~~ 105 (292)
.++|+.+ .-|+.+|.||...........+.++ +++++.... ....+..|.|.| |+|++- .+.|.++++.+
T Consensus 7 ~~lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GG-GtPs~l~~~~l~~ll~~l 84 (378)
T PRK05660 7 LSLYIHI-PWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGG-GTPSLFSAEAIQRLLDGV 84 (378)
T ss_pred eEEEEEe-CCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCC-CccccCCHHHHHHHHHHH
Confidence 4566665 7899999999774322222233333 334443211 113578999999 999984 57899999999
Q ss_pred hCCCCCC-CCCeEEEEcCCchh--h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe
Q 022752 106 TGLPFQV-SPKRITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181 (292)
Q Consensus 106 ~~~g~~~-~~~~i~l~TNG~~~--~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~ 181 (292)
++. +++ ....+++.||.... + +..+.+.+ ...+.|++++.+++..+.+. +..+.+++++++ +.+++.|..
T Consensus 85 ~~~-~~~~~~~eit~e~np~~l~~e~l~~Lk~~G-v~risiGvqS~~~~~L~~l~---r~~~~~~~~~ai-~~~~~~G~~ 158 (378)
T PRK05660 85 RAR-LPFAPDAEITMEANPGTVEADRFVGYQRAG-VNRISIGVQSFSEEKLKRLG---RIHGPDEAKRAA-KLAQGLGLR 158 (378)
T ss_pred HHh-CCCCCCcEEEEEeCcCcCCHHHHHHHHHcC-CCEEEeccCcCCHHHHHHhC---CCCCHHHHHHHH-HHHHHcCCC
Confidence 875 222 12689999996432 2 44555544 45788999999999998874 346899999999 566777754
Q ss_pred -EEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 182 -IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 182 -v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
+.+.++. +|+ .+.+++.+.++++.++++. +.+.++.+.
T Consensus 159 ~v~~dli~Glpg--qt~~~~~~~l~~~~~l~p~~is~y~l~~~ 199 (378)
T PRK05660 159 SFNLDLMHGLPD--QSLEEALDDLRQAIALNPPHLSWYQLTIE 199 (378)
T ss_pred eEEEEeecCCCC--CCHHHHHHHHHHHHhcCCCeEEeeccEec
Confidence 3343332 344 5778899999999998875 666665543
No 89
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=99.36 E-value=7.3e-13 Score=113.69 Aligned_cols=175 Identities=20% Similarity=0.312 Sum_probs=121.5
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCC----CcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCC-
Q 022752 34 STLCISSQVGCKMGCNFCATGTMG----FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL- 108 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~----~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~- 108 (292)
..|-+|.|..||++|.||...... ..+.++.++++........ .+++.+-++| |||++. +.+.++...+.+.
T Consensus 11 tyLrislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~-qgv~knrLtg-geptIr-~di~~i~~g~~~l~ 87 (323)
T KOG2876|consen 11 TYLRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAP-QGVDKNRLTG-GEPLIR-QDIVPIVAGLSSLP 87 (323)
T ss_pred hhhhhhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhH-hhhhhhhhcC-CCCccc-ccccchhhhhhccc
Confidence 456678889999999999775332 1234566776664444332 3688999999 999997 6688888888776
Q ss_pred CCCCCCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh-CCeEEEE
Q 022752 109 PFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIE 185 (292)
Q Consensus 109 g~~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~-~~~v~i~ 185 (292)
|+ ..+.|+|||+.+. +.++.+.+ ...+++|++....+.+..+++. -.+..++.++ +.+.+. ..++.++
T Consensus 88 gL----ks~~ITtng~vl~R~lp~lhkag-lssiNiSldtl~~aKfa~~~rr---~g~v~V~~~i-q~a~~lgy~pvkvn 158 (323)
T KOG2876|consen 88 GL----KSIGITTNGLVLARLLPQLHKAG-LSSINISLDTLVRAKFAKLTRR---KGFVKVWASI-QLAIELGYNPVKVN 158 (323)
T ss_pred ch----hhhceeccchhhhhhhhHHHhhc-ccchhhhhhhhhHHHHHHHhhh---ccHHHHHHHH-hHHhhhCCCCccee
Confidence 53 5788999997542 33444444 4678899998888877777543 4688999999 555433 2348899
Q ss_pred EEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCC
Q 022752 186 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 222 (292)
Q Consensus 186 ~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~ 222 (292)
.+++++.|++ ++-+++.+-+.....|.++.|+|..
T Consensus 159 ~v~~k~~n~~--ev~Dfv~~tr~~p~DVrfIe~mpf~ 193 (323)
T KOG2876|consen 159 CVVMKGLNED--EVFDFVLLTRMRPLDVRFIEFMPFD 193 (323)
T ss_pred eEEEeccCCC--cccceeeecCCCCcceEEEEecccC
Confidence 9999999885 3444443333334557777777753
No 90
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.35 E-value=9.1e-11 Score=110.97 Aligned_cols=177 Identities=15% Similarity=0.280 Sum_probs=120.1
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCH------HHHHHHHHHHh
Q 022752 34 STLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY------AALVEAVRIMT 106 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~------~~i~ell~~~~ 106 (292)
...++.++.|||++|.||..+.. +..+..+++++++++..... .+++.|.|+| .+-+.+. ..+.++++.+.
T Consensus 138 ~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~-~g~~ei~l~~-~~~~~y~~d~~~~~~l~~Ll~~l~ 215 (414)
T TIGR01579 138 TRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVA-KGYKEIVLTG-VNLGSYGDDLKNGTSLAKLLEQIL 215 (414)
T ss_pred eEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHH-CCCceEEEee-EccchhccCCCCCCcHHHHHHHHh
Confidence 44556668999999999987532 23467889999999988665 3788999988 5554431 35788888887
Q ss_pred CC-CCCCCCCeEEEEcCC---chhhHHHHhhhCC--CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHh--h
Q 022752 107 GL-PFQVSPKRITVSTVG---IVHAINKFHSDLP--GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN--S 178 (292)
Q Consensus 107 ~~-g~~~~~~~i~l~TNG---~~~~~~~l~~~~~--~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~--~ 178 (292)
+. + + ..+.+.+.- +.+++.+++.... -..+.+.+.+.+++..+.+. ++.+.+++.++++ .+++ .
T Consensus 216 ~~~~--~--~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~---R~~~~~~~~~~v~-~l~~~~~ 287 (414)
T TIGR01579 216 QIPG--I--KRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMR---RKYTRDDFLKLVN-KLRSVRP 287 (414)
T ss_pred cCCC--C--cEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcC---CCCCHHHHHHHHH-HHHHhCC
Confidence 65 3 1 235544321 1222223332221 23577899999999988873 4467888999985 4555 5
Q ss_pred CCeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 179 QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 179 ~~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
+..+...+++ +|| ++++++++.++++.++++. +++.+|.|.+
T Consensus 288 gi~i~~~~IvG~Pg--ET~ed~~~tl~~i~~~~~~~~~~~~~sp~p 331 (414)
T TIGR01579 288 DYAFGTDIIVGFPG--ESEEDFQETLRMVKEIEFSHLHIFPYSARP 331 (414)
T ss_pred CCeeeeeEEEECCC--CCHHHHHHHHHHHHhCCCCEEEeeecCCCC
Confidence 6655554444 354 7889999999999998875 7777887753
No 91
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.35 E-value=3.1e-10 Score=102.31 Aligned_cols=203 Identities=13% Similarity=0.139 Sum_probs=135.3
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhccCCcceEEEecCCc-ccc---CHHHHHHHHHHHhCC
Q 022752 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLN---NYAALVEAVRIMTGL 108 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE-Pll---~~~~i~ell~~~~~~ 108 (292)
+...|+-++.||+.+|.||...........+++++.+.+..+.. .+++.|+|+| |+ +-+ ..+.+.++++.+++.
T Consensus 62 ~tatfm~i~~gC~~~C~FC~v~~~rg~~~~~~eei~~~a~~~~~-~GlkevvLTs-v~~ddl~d~g~~~l~~li~~I~~~ 139 (302)
T TIGR00510 62 GTATFMILGDICTRRCPFCDVAHGRNPLPPDPEEPAKLAETIKD-MGLKYVVITS-VDRDDLEDGGASHLAECIEAIREK 139 (302)
T ss_pred CEEEEEecCcCcCCCCCcCCccCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEEe-ecCCCcccccHHHHHHHHHHHHhc
Confidence 34555556899999999998754432233567888888877665 4789999999 64 222 245789999999886
Q ss_pred CCCCCCCeEEEEcC---CchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEE
Q 022752 109 PFQVSPKRITVSTV---GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 185 (292)
Q Consensus 109 g~~~~~~~i~l~TN---G~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~ 185 (292)
. +...+.+.+. |....+..+.++++ ..+..-+++. +..+..+.+ ..++++.++.++ .+++....+.+.
T Consensus 140 ~---p~i~Ievl~~d~~g~~e~l~~l~~aG~-dv~~hnlEt~-~~l~~~vrr---~~t~e~~Le~l~-~ak~~~pgi~~~ 210 (302)
T TIGR00510 140 L---PNIKIETLVPDFRGNIAALDILLDAPP-DVYNHNLETV-ERLTPFVRP---GATYRWSLKLLE-RAKEYLPNLPTK 210 (302)
T ss_pred C---CCCEEEEeCCcccCCHHHHHHHHHcCc-hhhcccccch-HHHHHHhCC---CCCHHHHHHHHH-HHHHhCCCCeec
Confidence 2 1245666664 22222445555543 1133334444 667776643 478999999995 455553345666
Q ss_pred EEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEec-CCCC---CCCCcCCCcHHHHHHHHHHHHhcCCeE
Q 022752 186 YIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPF-NPIG---SVSQFRTSSDDKVSSFQKILRGSYNIR 249 (292)
Q Consensus 186 ~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~-~p~~---~~~~~~~~~~e~l~~~~~~l~~~~g~~ 249 (292)
+-++-|+.++++++.+.+++|+++++. +.+-+| .|.. +...| ..+++.+.++++.. +.|+.
T Consensus 211 TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~--~~p~~f~~~~~~a~-~~gf~ 276 (302)
T TIGR00510 211 SGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRY--VSPEEFDYYRSVAL-EMGFL 276 (302)
T ss_pred ceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccC--CCHHHHHHHHHHHH-HcCCh
Confidence 667778889999999999999999987 666665 4533 22333 56778888888877 67764
No 92
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.35 E-value=4e-10 Score=108.21 Aligned_cols=207 Identities=11% Similarity=0.165 Sum_probs=128.7
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCCCC--cCCCC---HHHHHHHHHHhhc-----cCCcceEEEecCCcccc-CHHHHHH
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTMGF--KSNLS---SGEIVEQLVHASR-----LSNIRNVVFMGMGEPLN-NYAALVE 100 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~~~--~~~~~---~eei~~~i~~~~~-----~~~~~~I~fsG~GEPll-~~~~i~e 100 (292)
...+||+.. ..||.+|.||....... ..... .+.+.+++..... ...+..|.|.| |+|++ ..+.+.+
T Consensus 162 ~~~sLYihI-PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGG-GTPt~L~~~~L~~ 239 (488)
T PRK08207 162 NEVSIYIGI-PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGG-GTPTSLTAEELER 239 (488)
T ss_pred CceEEEEec-CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeC-CCccCCCHHHHHH
Confidence 346788876 78999999997653311 11111 2344455544321 12467899999 99985 5688999
Q ss_pred HHHHHhCCCCCCCCC-eEEEEc-C--Cchhh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHH
Q 022752 101 AVRIMTGLPFQVSPK-RITVST-V--GIVHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175 (292)
Q Consensus 101 ll~~~~~~g~~~~~~-~i~l~T-N--G~~~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~ 175 (292)
+++.+++.-.++... .+++.. + .+..+ +..+.+.+ ...+.|.+++.+++..+.+. +..+.+++++++ +.+
T Consensus 240 Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~G-v~RISIGvQS~~d~vLk~ig---R~ht~e~v~~ai-~~a 314 (488)
T PRK08207 240 LLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYG-VDRISINPQTMNDETLKAIG---RHHTVEDIIEKF-HLA 314 (488)
T ss_pred HHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcC-CCeEEEcCCcCCHHHHHHhC---CCCCHHHHHHHH-HHH
Confidence 999887641022222 555543 2 12233 33444443 45688899999999998873 347899999999 567
Q ss_pred HhhCC-eEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC--C----CCCcCCCcHHHHHHH----HHHH
Q 022752 176 KNSQQ-KIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--S----VSQFRTSSDDKVSSF----QKIL 242 (292)
Q Consensus 176 ~~~~~-~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~--~----~~~~~~~~~e~l~~~----~~~l 242 (292)
++.|. .+.+.+++ +| .++.+++.+.++++.++++. +.+.++.+.. + ...+..++.++..++ .+.+
T Consensus 315 r~~Gf~~In~DLI~GLP--gEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l 392 (488)
T PRK08207 315 REMGFDNINMDLIIGLP--GEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWA 392 (488)
T ss_pred HhCCCCeEEEEEEeCCC--CCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHH
Confidence 77776 45555443 34 46788999999999998875 6665555432 1 123445666554443 3344
Q ss_pred HhcCCe
Q 022752 243 RGSYNI 248 (292)
Q Consensus 243 ~~~~g~ 248 (292)
+ ..|+
T Consensus 393 ~-~~Gy 397 (488)
T PRK08207 393 K-ELGY 397 (488)
T ss_pred H-HcCC
Confidence 4 4454
No 93
>PRK12928 lipoyl synthase; Provisional
Probab=99.35 E-value=1.3e-10 Score=104.39 Aligned_cols=204 Identities=14% Similarity=0.155 Sum_probs=138.8
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhccCCcceEEEecCCc----cccCHHHHHHHHHHHhCC
Q 022752 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE----PLNNYAALVEAVRIMTGL 108 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE----Pll~~~~i~ell~~~~~~ 108 (292)
+..-|+..+.||+.+|.||..... ....++++++.+.+.+... .+++.|.++| |. |-...+.+.++++.+++.
T Consensus 59 ~~~tfv~is~gC~~~C~FCa~~~g-~~~~~~~eei~~~a~~~~~-~G~keivitg-~~~dDl~d~g~~~~~ell~~Ik~~ 135 (290)
T PRK12928 59 GTATFLIMGSICTRRCAFCQVDKG-RPMPLDPDEPERVAEAVAA-LGLRYVVLTS-VARDDLPDGGAAHFVATIAAIRAR 135 (290)
T ss_pred CEEEEEEecccccCcCCCCCccCC-CCCCCCHHHHHHHHHHHHH-CCCCEEEEEE-EeCCcccccCHHHHHHHHHHHHhc
Confidence 344555558999999999977652 3456889999988887665 4789999999 64 334456788999999986
Q ss_pred CCCCCCCeEEEEcCCch----hhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEE
Q 022752 109 PFQVSPKRITVSTVGIV----HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 184 (292)
Q Consensus 109 g~~~~~~~i~l~TNG~~----~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i 184 (292)
. +...+.+.|-... ..+..+.++++.+ +..-+.+ .+.+++.+.+ +.++++.++.+ +.+++.+..+.+
T Consensus 136 ~---p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i-~~hnlEt-~~~vl~~m~r---~~t~e~~le~l-~~ak~~gp~i~~ 206 (290)
T PRK12928 136 N---PGTGIEVLTPDFWGGQRERLATVLAAKPDV-FNHNLET-VPRLQKAVRR---GADYQRSLDLL-ARAKELAPDIPT 206 (290)
T ss_pred C---CCCEEEEeccccccCCHHHHHHHHHcCchh-hcccCcC-cHHHHHHhCC---CCCHHHHHHHH-HHHHHhCCCcee
Confidence 3 1245665554332 2245555554211 1111333 4788887753 47899999999 456676655666
Q ss_pred EEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecC-CCCCCCCc-CCCcHHHHHHHHHHHHhcCCeE
Q 022752 185 EYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFN-PIGSVSQF-RTSSDDKVSSFQKILRGSYNIR 249 (292)
Q Consensus 185 ~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~-p~~~~~~~-~~~~~e~l~~~~~~l~~~~g~~ 249 (292)
.+.++-|..++.+++.+.++++.++++. +.+.+|- |...+..+ .-.++++.+.++++.. +.|+.
T Consensus 207 ~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~-~~g~~ 273 (290)
T PRK12928 207 KSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIAR-ELGFS 273 (290)
T ss_pred cccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHH-HcCCc
Confidence 6666667889999999999999999987 7777874 43211111 2256788888888888 67864
No 94
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.33 E-value=1.9e-10 Score=109.52 Aligned_cols=179 Identities=15% Similarity=0.264 Sum_probs=121.3
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCCC-CcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCH-----HHHHHHHHHH
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTMG-FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY-----AALVEAVRIM 105 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~~-~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~-----~~i~ell~~~ 105 (292)
.+...++.++.|||++|.||..+... ..+..+++++++++..... .+++.|.|+| .+.+.+. ..+.++++.+
T Consensus 144 ~~~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~-~g~~eI~l~d-~~~~~y~~~~~~~~~~~Ll~~l 221 (437)
T PRK14331 144 NKYCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVD-DGVKEIHLIG-QNVTAYGKDIGDVPFSELLYAV 221 (437)
T ss_pred CCcEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHH-CCCeEEEEee-eccccccCCCCCCCHHHHHHHH
Confidence 34566777789999999999876432 3367789999999988765 3788999999 7776641 2467788887
Q ss_pred hCC-CCCCCCCeEEEEcC---CchhhHHHHhhhCC--CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh-
Q 022752 106 TGL-PFQVSPKRITVSTV---GIVHAINKFHSDLP--GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS- 178 (292)
Q Consensus 106 ~~~-g~~~~~~~i~l~TN---G~~~~~~~l~~~~~--~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~- 178 (292)
.+. | + ..+.+.+. ...+++.+++...+ -..+.+.+.+.+++..+.+. ++.+.+++.++++ .+++.
T Consensus 222 ~~~~g--~--~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~---R~~t~~~~~~~v~-~lr~~~ 293 (437)
T PRK14331 222 AEIDG--V--ERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMD---RGYTKEEYLEKIE-LLKEYI 293 (437)
T ss_pred hcCCC--c--cEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcC---CCCCHHHHHHHHH-HHHHhC
Confidence 765 3 1 24555442 12223323332221 23567899999999988763 4578888888884 45555
Q ss_pred -CCeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 179 -QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 179 -~~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
+..+...+++ +|| ++++++++.++++.++++. +++.+|.|.+
T Consensus 294 ~gi~i~~d~IvG~Pg--ET~ed~~~tl~~l~~l~~~~i~~f~~sp~p 338 (437)
T PRK14331 294 PDITFSTDIIVGFPT--ETEEDFEETLDVLKKVEFEQVFSFKYSPRP 338 (437)
T ss_pred CCCEEecCEEEECCC--CCHHHHHHHHHHHHhcCcceeeeeEecCCC
Confidence 5544444443 355 5789999999999999875 5666777653
No 95
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.32 E-value=2.2e-10 Score=108.80 Aligned_cols=181 Identities=14% Similarity=0.311 Sum_probs=119.4
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEec-----CCccccCHHHHHHHHHHHh
Q 022752 33 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMG-----MGEPLNNYAALVEAVRIMT 106 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG-----~GEPll~~~~i~ell~~~~ 106 (292)
+...++.++.|||++|.||..+.. +..+..+++++++++..... .+.+.|.|+| +|..+-....+.++++.++
T Consensus 138 ~~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~-~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~ 216 (429)
T TIGR00089 138 KTRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVS-KGVKEIVLLGQNVGAYGKDLKGETNLADLLRELS 216 (429)
T ss_pred CeEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHH-CCCceEEEEeeccccccCCCCCCcCHHHHHHHHh
Confidence 445677778999999999987542 24467889999999998765 3778898887 1232222234778888887
Q ss_pred CC-CCCCCCCeEEEEc-CC--chhhHHHHhhhCC--CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCC
Q 022752 107 GL-PFQVSPKRITVST-VG--IVHAINKFHSDLP--GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180 (292)
Q Consensus 107 ~~-g~~~~~~~i~l~T-NG--~~~~~~~l~~~~~--~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~ 180 (292)
+. |. ..+.+.+ +. ..+++.+++.... -..+.+.+++.+++..+.+. +..+.+++.+.++ .+++.+.
T Consensus 217 ~~~g~----~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~---R~~~~~~~~~~i~-~lr~~~~ 288 (429)
T TIGR00089 217 KIDGI----ERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMN---RKYTREEYLDIVE-KIRAKIP 288 (429)
T ss_pred cCCCC----CEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCC---CCCCHHHHHHHHH-HHHHHCC
Confidence 75 31 2455543 22 2233333333221 23577899999999988763 3467888888884 4555553
Q ss_pred eEEEEEEEeCC-CCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 181 KIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 181 ~v~i~~vl~~g-~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
.+.+..-++-| -+++.+++.+.++++.++++. +++.+|.|..
T Consensus 289 ~i~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~p 332 (429)
T TIGR00089 289 DAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRP 332 (429)
T ss_pred CCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCC
Confidence 33444333322 257889999999999999875 7777777753
No 96
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.31 E-value=1.8e-10 Score=109.03 Aligned_cols=180 Identities=14% Similarity=0.239 Sum_probs=116.1
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCCC-CcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccC----HHHHHHHHHHHh
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTMG-FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN----YAALVEAVRIMT 106 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~~-~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~----~~~i~ell~~~~ 106 (292)
.+...++.++.|||++|.||..+... ..+..+++++++++..... .+++.|.|+| .+-..+ ...+.++++.+.
T Consensus 131 ~~~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~-~G~~ei~l~g-~d~~~yg~d~~~~l~~Ll~~l~ 208 (420)
T TIGR01578 131 NPLIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVA-EGCKEIWITS-QDTGAYGRDIGSRLPELLRLIT 208 (420)
T ss_pred CCcEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHH-CCCeEEEEEe-eccccccCCCCcCHHHHHHHHH
Confidence 34566777789999999999886432 3466889999999998665 3788999998 443321 123667777776
Q ss_pred CCCCCCCCCeEEEEc-C-Cch-hhHHHHhhhC--CC--ceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh-
Q 022752 107 GLPFQVSPKRITVST-V-GIV-HAINKFHSDL--PG--LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS- 178 (292)
Q Consensus 107 ~~g~~~~~~~i~l~T-N-G~~-~~~~~l~~~~--~~--~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~- 178 (292)
+... ...+.+.+ + ... ....++.+.. .. ..+.+.+.+.+++..+.+. +..+.+++.+.++ .+++.
T Consensus 209 ~i~~---~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~---R~~~~~~~~~~i~-~i~~~~ 281 (420)
T TIGR01578 209 EIPG---EFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMK---REYTVSDFEDIVD-KFRERF 281 (420)
T ss_pred hCCC---CcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcC---CCCCHHHHHHHHH-HHHHhC
Confidence 5421 12344432 1 111 1112333221 11 2466899999999988774 3467888888884 44444
Q ss_pred -CCeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 179 -QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 179 -~~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
+..+...+++ +| +++++++++.++++.++++. +++.+|.|.+
T Consensus 282 ~~i~i~~~~IvG~P--gET~ed~~~t~~~~~~~~~~~i~~~~~~p~p 326 (420)
T TIGR01578 282 PDLTLSTDIIVGFP--TETDDDFEETMELLRKYRPEKINITKFSPRP 326 (420)
T ss_pred CCCEEEeeEEEeCC--CCCHHHHHHHHHHHHHhCCCEEEEEEeeCCC
Confidence 4444443333 24 57889999999999998875 7777777753
No 97
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.31 E-value=2.4e-10 Score=108.84 Aligned_cols=179 Identities=12% Similarity=0.235 Sum_probs=120.8
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCH-----HHHHHHHHHHh
Q 022752 33 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY-----AALVEAVRIMT 106 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~-----~~i~ell~~~~ 106 (292)
+...++.++.|||++|.||..+.. +..+..+++++++++..... .++..|.|+| .+.+.+. ..+.++++.+.
T Consensus 148 ~~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~-~G~~ei~l~~-~~~~~y~d~~~~~~l~~Ll~~l~ 225 (445)
T PRK14340 148 SISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAE-AGYREITLLG-QNVNSYSDPEAGADFAGLLDAVS 225 (445)
T ss_pred CcEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHH-CCCeEEEEee-cccchhhccCCCchHHHHHHHHh
Confidence 445677778999999999987643 23467889999999988765 3789999998 6555421 23677888776
Q ss_pred CCCCCCCCCeEEEEcC---CchhhHHHHhhhCC--CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh--C
Q 022752 107 GLPFQVSPKRITVSTV---GIVHAINKFHSDLP--GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS--Q 179 (292)
Q Consensus 107 ~~g~~~~~~~i~l~TN---G~~~~~~~l~~~~~--~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~--~ 179 (292)
+.. ....+.+.+. .+..++.+++...+ -..+.+.+.+.+++..+.+ +++.+.+++.++++ .+++. +
T Consensus 226 ~~~---~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m---~R~~t~~~~~~~v~-~lr~~~pg 298 (445)
T PRK14340 226 RAA---PEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRM---NRGHTIEEYLEKIA-LIRSAIPG 298 (445)
T ss_pred hcC---CCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhc---CCCCCHHHHHHHHH-HHHHhCCC
Confidence 541 1134555432 22233323332221 2357789999999998876 34578888899984 45555 6
Q ss_pred CeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 180 QKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 180 ~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
..+...+++ +|| ++++++++.++++.++++. +++.+|.|..
T Consensus 299 i~i~td~IvGfPg--ET~edf~~tl~~~~~~~~~~~~~f~~sp~p 341 (445)
T PRK14340 299 VTLSTDLIAGFCG--ETEEDHRATLSLMEEVRFDSAFMFYYSVRP 341 (445)
T ss_pred CEEeccEEEECCC--CCHHHHHHHHHHHHhcCCCEEeeEEecCCC
Confidence 555544444 355 6889999999999999875 6777777753
No 98
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.31 E-value=4.3e-10 Score=107.10 Aligned_cols=182 Identities=12% Similarity=0.231 Sum_probs=119.7
Q ss_pred CCceEEEEEcCCCCCcCCcCcCCCCCC-CcCCCCHHHHHHHHHHhhccCCcceEEEecC------CccccCHHHHHHHHH
Q 022752 31 GPRSTLCISSQVGCKMGCNFCATGTMG-FKSNLSSGEIVEQLVHASRLSNIRNVVFMGM------GEPLNNYAALVEAVR 103 (292)
Q Consensus 31 ~~r~~l~is~t~gCNl~C~yC~~~~~~-~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~------GEPll~~~~i~ell~ 103 (292)
..+...++.++.|||++|.||..+... ..+..+++++++++..... .+++.|.|+|. |++... ..+.++++
T Consensus 135 ~~~~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~-~G~keI~l~g~~~~~yG~d~~~~-~~~~~Ll~ 212 (440)
T PRK14334 135 QGKLSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKA-AGVQEVTLLGQNVNSYGVDQPGF-PSFAELLR 212 (440)
T ss_pred CCCeEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHH-CCCeEEEEEeccccccccCCCCc-CCHHHHHH
Confidence 456788888899999999999886432 2346789999999988665 36777887651 343222 24667777
Q ss_pred HHhCCCCCCCCCeEEEEc-CC--chhhHHHHhhhCC--CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh
Q 022752 104 IMTGLPFQVSPKRITVST-VG--IVHAINKFHSDLP--GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178 (292)
Q Consensus 104 ~~~~~g~~~~~~~i~l~T-NG--~~~~~~~l~~~~~--~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~ 178 (292)
.+.+.++ ..+.+.+ +. +.+++.+++...+ -..+.|++++.+++..+.+. +..+.+++++.++ .+++.
T Consensus 213 ~l~~~~i----~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~---R~~~~~~~~~~v~-~lr~~ 284 (440)
T PRK14334 213 LVGASGI----PRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMA---REYRREKYLERIA-EIREA 284 (440)
T ss_pred HHHhcCC----cEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhC---CCCCHHHHHHHHH-HHHHh
Confidence 7766542 2345543 33 2233323332221 23577899999999988763 4577888888884 45566
Q ss_pred CCeEEEEEEEeCC-CCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 179 QQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 179 ~~~v~i~~vl~~g-~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
+..+.+++-++-| -.++.+++++.++++.++++. +++.+|.|.+
T Consensus 285 ~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~p 330 (440)
T PRK14334 285 LPDVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRP 330 (440)
T ss_pred CCCcEEEEeEEEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCC
Confidence 5555544433322 246789999999999998875 7777777653
No 99
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.29 E-value=6.1e-10 Score=106.18 Aligned_cols=180 Identities=16% Similarity=0.259 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCC-CcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCH---HHHHHHHHHHhCCC
Q 022752 34 STLCISSQVGCKMGCNFCATGTMG-FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY---AALVEAVRIMTGLP 109 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~-~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~---~~i~ell~~~~~~g 109 (292)
...++.++.|||++|.||..+... ..+..+++++++++..... .+++.|.|+| .+-+.+. ..+.++++.+.+..
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~-~G~kei~l~~-~~~~~y~~~~~~l~~Ll~~l~~~~ 231 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQE-KGIRQVTLLG-QNVNSYKEQSTDFAGLIQMLLDET 231 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHH-CCCeEEEEec-ccCCcccCCcccHHHHHHHHhcCC
Confidence 345666689999999999886432 3467889999999998765 3789999999 6666652 23667777665541
Q ss_pred CCCCCCeEEEEc---CCchhhHHHHhhhCCC--ceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEE
Q 022752 110 FQVSPKRITVST---VGIVHAINKFHSDLPG--LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 184 (292)
Q Consensus 110 ~~~~~~~i~l~T---NG~~~~~~~l~~~~~~--~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i 184 (292)
++ ..+.+.+ +.+..++.++....+. ..+.+.+.+.+++..+.+. ++.+.++..++++. +++....+.+
T Consensus 232 -~~--~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~---R~~t~~~~~~~i~~-lr~~~p~i~i 304 (449)
T PRK14332 232 -TI--ERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMK---RSYSKEEFLDVVKE-IRNIVPDVGI 304 (449)
T ss_pred -Cc--ceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhC---CCCCHHHHHHHHHH-HHHhCCCCEE
Confidence 11 2455544 2222333333332222 2567899999999988874 45788888888844 4444333444
Q ss_pred EEEEeCC-CCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 185 EYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 185 ~~vl~~g-~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
.+-++-| -.++++++++.++++.++++. +++.+|.|..
T Consensus 305 ~td~IvGfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~ 344 (449)
T PRK14332 305 TTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSERE 344 (449)
T ss_pred EEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 4434333 246889999999999999876 7778887764
No 100
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.29 E-value=1.3e-09 Score=101.87 Aligned_cols=177 Identities=11% Similarity=0.127 Sum_probs=117.9
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCCCcC---CCC----HHHHHHHHHHhhcc-----CCcceEEEecCCcccc-CHHHHHH
Q 022752 34 STLCISSQVGCKMGCNFCATGTMGFKS---NLS----SGEIVEQLVHASRL-----SNIRNVVFMGMGEPLN-NYAALVE 100 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~~~~---~~~----~eei~~~i~~~~~~-----~~~~~I~fsG~GEPll-~~~~i~e 100 (292)
..||+.+ .-|+.+|.||......... ..+ .+.+.+++...... ..+..|.|.| |.|++ ..+.+.+
T Consensus 3 ~~lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GG-GTPs~l~~~~l~~ 80 (375)
T PRK05628 3 FGVYVHV-PFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGG-GTPSLLGAEGLAR 80 (375)
T ss_pred eEEEEEe-CCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCC-CccccCCHHHHHH
Confidence 3566655 6899999999763221111 122 23444444433221 2367888999 99995 5678999
Q ss_pred HHHHHhCC-CCCCCCCeEEEEcCCchh--h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHH
Q 022752 101 AVRIMTGL-PFQVSPKRITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176 (292)
Q Consensus 101 ll~~~~~~-g~~~~~~~i~l~TNG~~~--~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~ 176 (292)
+++.+++. ++. ....+++.+|.... + +..+.+.+ ...+.+.+++.+++..+.+. +..+.+++++++ +.++
T Consensus 81 ll~~i~~~~~~~-~~~e~t~e~~p~~i~~e~l~~l~~~G-~~rvslGvQS~~~~~L~~l~---R~~s~~~~~~a~-~~l~ 154 (375)
T PRK05628 81 VLDAVRDTFGLA-PGAEVTTEANPESTSPEFFAALRAAG-FTRVSLGMQSAAPHVLAVLD---RTHTPGRAVAAA-REAR 154 (375)
T ss_pred HHHHHHHhCCCC-CCCEEEEEeCCCCCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHcC---CCCCHHHHHHHH-HHHH
Confidence 99998874 321 22568888886432 2 33444443 45688999999999988873 457899999999 5567
Q ss_pred hhCCe-EEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCC
Q 022752 177 NSQQK-IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNP 220 (292)
Q Consensus 177 ~~~~~-v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p 220 (292)
+.+.. +.+.+++ +|| .+.+++.+.++++.++++. +.+.++.+
T Consensus 155 ~~g~~~v~~dli~GlPg--qt~~~~~~tl~~~~~l~~~~i~~y~l~~ 199 (375)
T PRK05628 155 AAGFEHVNLDLIYGTPG--ESDDDWRASLDAALEAGVDHVSAYALIV 199 (375)
T ss_pred HcCCCcEEEEEeccCCC--CCHHHHHHHHHHHHhcCCCEEEeeeeec
Confidence 77766 6666655 465 5778999999999998875 66655543
No 101
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.29 E-value=7.5e-10 Score=103.49 Aligned_cols=177 Identities=11% Similarity=0.124 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCCC-c--CCCCHHHHHHHHHHhhcc--CCcceEEEecCCcccc-CHHHHHHHHHHHhC
Q 022752 34 STLCISSQVGCKMGCNFCATGTMGF-K--SNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLN-NYAALVEAVRIMTG 107 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~~-~--~~~~~eei~~~i~~~~~~--~~~~~I~fsG~GEPll-~~~~i~ell~~~~~ 107 (292)
.++|+.+ .-|+.+|.||....... . ....++.+++++...... ..+..|.|.| |+|++ ..+.+.++++.+++
T Consensus 2 ~~lYihi-PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gG-Gtpt~l~~~~l~~ll~~i~~ 79 (377)
T PRK08599 2 TSAYIHI-PFCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGG-GTPTALSAEQLERLLTAIHR 79 (377)
T ss_pred ceEEEEe-CCcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCC-CCcccCCHHHHHHHHHHHHH
Confidence 3455655 56999999997543211 1 112345666666443322 2577898999 99994 67889999999988
Q ss_pred CCCCCC-CCeEEEEcCCch--hh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-E
Q 022752 108 LPFQVS-PKRITVSTVGIV--HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-I 182 (292)
Q Consensus 108 ~g~~~~-~~~i~l~TNG~~--~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v 182 (292)
. +++. ...+++.+|... .+ +..+.+.+ ...+.|++++.+++..+.+. +..+.+++.+++ +.+++.|.. +
T Consensus 80 ~-~~~~~~~eit~e~~p~~l~~e~l~~l~~~G-~~rvsiGvqS~~~~~l~~l~---r~~~~~~~~~~i-~~l~~~g~~~v 153 (377)
T PRK08599 80 N-LPLSGLEEFTFEANPGDLTKEKLQVLKDSG-VNRISLGVQTFNDELLKKIG---RTHNEEDVYEAI-ANAKKAGFDNI 153 (377)
T ss_pred h-CCCCCCCEEEEEeCCCCCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHcC---CCCCHHHHHHHH-HHHHHcCCCcE
Confidence 5 2222 147888999742 22 34444444 35688999999999998874 357889999999 556677654 4
Q ss_pred EEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCC
Q 022752 183 FIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNP 220 (292)
Q Consensus 183 ~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p 220 (292)
.+.+++ +| .++.+++.+.++++.++++. +.+.++.+
T Consensus 154 ~~dli~GlP--gqt~~~~~~~l~~~~~l~~~~i~~y~l~~ 191 (377)
T PRK08599 154 SIDLIYALP--GQTIEDFKESLAKALALDIPHYSAYSLIL 191 (377)
T ss_pred EEeeecCCC--CCCHHHHHHHHHHHHccCCCEEeeeceee
Confidence 554433 34 46788999999999998865 65555444
No 102
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.28 E-value=7.6e-10 Score=105.63 Aligned_cols=177 Identities=13% Similarity=0.241 Sum_probs=116.7
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCCCC-CcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccC--------HHHHHHHHH
Q 022752 33 RSTLCISSQVGCKMGCNFCATGTMG-FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN--------YAALVEAVR 103 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~~~-~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~--------~~~i~ell~ 103 (292)
+...++.++.|||++|.||..+... ..+..+++++++++..... .++..|.|+| -.-+.+ ...+.++++
T Consensus 146 ~~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~-~g~~ei~l~d-~~~~~y~~~~~~~~~~~l~~Ll~ 223 (444)
T PRK14325 146 GPSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAE-QGVREITLLG-QNVNAYRGEGPDGEIADFAELLR 223 (444)
T ss_pred CceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHH-CCCcEEEEEe-eccccccCCCCCCCcchHHHHHH
Confidence 4556677789999999999876432 2346789999999988665 3778888887 433332 125778888
Q ss_pred HHhCC-CCCCCCCeEEEEc-CC--chhhHH-HHhhhCC-CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHh
Q 022752 104 IMTGL-PFQVSPKRITVST-VG--IVHAIN-KFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177 (292)
Q Consensus 104 ~~~~~-g~~~~~~~i~l~T-NG--~~~~~~-~l~~~~~-~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~ 177 (292)
.+.+. +. ..+.+.+ +. ...++. .+.+... -..+.+.+++.+++..+.+. +..+.+++.++++ .+++
T Consensus 224 ~l~~~~~~----~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~---R~~~~~~~~~~i~-~lr~ 295 (444)
T PRK14325 224 LVAAIDGI----ERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMN---RGHTALEYKSIIR-KLRA 295 (444)
T ss_pred HHHhcCCc----cEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCC---CCCCHHHHHHHHH-HHHH
Confidence 88765 31 2355543 22 222222 3333221 23567899999999988763 4478888999995 4455
Q ss_pred h--CCeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 178 S--QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 178 ~--~~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
. +..+...+++ +|| ++++++++.++++.++++. +.+.+|.|.
T Consensus 296 ~~~gi~v~~~~IvG~Pg--ET~ed~~~tl~~i~~~~~~~~~~~~~sp~ 341 (444)
T PRK14325 296 ARPDIAISSDFIVGFPG--ETDEDFEATMKLIEDVGFDQSFSFIYSPR 341 (444)
T ss_pred HCCCCEEEeeEEEECCC--CCHHHHHHHHHHHHhcCCCeeeeeeccCC
Confidence 4 4445544443 354 6789999999999998865 566666665
No 103
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.26 E-value=1.4e-09 Score=104.78 Aligned_cols=179 Identities=11% Similarity=0.221 Sum_probs=118.9
Q ss_pred CCceEEEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccC-------HHHHHHHH
Q 022752 31 GPRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN-------YAALVEAV 102 (292)
Q Consensus 31 ~~r~~l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~-------~~~i~ell 102 (292)
..+...++.++.|||++|.||..+.. +..+..+++++++++..... .+++.|.|+| ..-..+ ...+.+++
T Consensus 209 ~~~~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~-~G~keI~L~g-~n~~~yg~d~~~~~~~l~~Ll 286 (509)
T PRK14327 209 EGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAR-QGYKEITLLG-QNVNAYGKDFEDIEYGLGDLM 286 (509)
T ss_pred CCCeEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHH-CCCcEEEEEe-eccccCcccccccchHHHHHH
Confidence 34567778888999999999987543 23467889999999988765 3678888888 432221 12467888
Q ss_pred HHHhCCCCCCCCCeEEEEcC-C--chhhHHHHhhhCCC--ceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHh
Q 022752 103 RIMTGLPFQVSPKRITVSTV-G--IVHAINKFHSDLPG--LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177 (292)
Q Consensus 103 ~~~~~~g~~~~~~~i~l~TN-G--~~~~~~~l~~~~~~--~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~ 177 (292)
+.+.+.+ + ..+.+.|. - +..++.+++...+. -.+.+.+.+.+++..+.+. ++++.++.++.++. +++
T Consensus 287 ~~I~~~~--i--~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~---R~~t~e~~~~~v~~-lr~ 358 (509)
T PRK14327 287 DEIRKID--I--PRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMA---RKYTRESYLELVRK-IKE 358 (509)
T ss_pred HHHHhCC--C--ceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcC---CCCCHHHHHHHHHH-HHH
Confidence 8887754 2 24555542 1 22233333332222 2577899999999988763 45778888888844 444
Q ss_pred hCCeEEEE--EEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 178 SQQKIFIE--YIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 178 ~~~~v~i~--~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
....+.+. +++ +|| ++++++++.++++.++++. +.+.+|.|.
T Consensus 359 ~~p~i~i~tdiIvGfPg--ET~edf~~Tl~~v~~l~~d~~~~f~yspr 404 (509)
T PRK14327 359 AIPNVALTTDIIVGFPN--ETDEQFEETLSLYREVGFDHAYTFIYSPR 404 (509)
T ss_pred hCCCcEEeeeEEEeCCC--CCHHHHHHHHHHHHHcCCCeEEEeeeeCC
Confidence 43334443 333 355 6788999999999998865 666667665
No 104
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.26 E-value=1.2e-09 Score=103.67 Aligned_cols=180 Identities=15% Similarity=0.146 Sum_probs=119.9
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCCCCcC-CC---CHHHHHHHHHHhhc---cCCcceEEEecCCcccc-CHHHHHHHHH
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTMGFKS-NL---SSGEIVEQLVHASR---LSNIRNVVFMGMGEPLN-NYAALVEAVR 103 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~~~~~-~~---~~eei~~~i~~~~~---~~~~~~I~fsG~GEPll-~~~~i~ell~ 103 (292)
....|++.+ .-|+.+|.||......... .. ..+.+++++..... ...+..|.|.| |+|++ ..+.+.++++
T Consensus 38 ~~~~lYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GG-GTPs~l~~~~l~~Ll~ 115 (430)
T PRK08208 38 DALSLYIHI-PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGG-GTPTLLNAAELEKLFD 115 (430)
T ss_pred CceEEEEEe-CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcC-CccccCCHHHHHHHHH
Confidence 346788877 7899999999764321111 11 12445555544321 12467889989 99987 4677888888
Q ss_pred HHhCCCCCCC--CCeEEEEcCCchh--h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh
Q 022752 104 IMTGLPFQVS--PKRITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178 (292)
Q Consensus 104 ~~~~~g~~~~--~~~i~l~TNG~~~--~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~ 178 (292)
.+++. +++. ...+++.||.... + +..+.+.+ ...+.|.+++.+++..+.+. +..+.+++++++ +.+++.
T Consensus 116 ~i~~~-~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G-~~rvslGvQS~~~~~L~~l~---R~~~~~~~~~ai-~~l~~~ 189 (430)
T PRK08208 116 SVERV-LGVDLGNIPKSVETSPATTTAEKLALLAARG-VNRLSIGVQSFHDSELHALH---RPQKRADVHQAL-EWIRAA 189 (430)
T ss_pred HHHHh-CCCCCCCceEEEEeCcCcCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHhC---CCCCHHHHHHHH-HHHHHc
Confidence 88764 2221 2468899997432 2 33444433 45688999999998888774 346889999999 567777
Q ss_pred CCe-EEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 179 QQK-IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 179 ~~~-v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
|.. +.+.+++ +| +++.+++.+.++++.++++. +.+.++.+.
T Consensus 190 g~~~i~~dlI~GlP--~qt~e~~~~~l~~~~~l~~~~is~y~L~~~ 233 (430)
T PRK08208 190 GFPILNIDLIYGIP--GQTHASWMESLDQALVYRPEELFLYPLYVR 233 (430)
T ss_pred CCCeEEEEeecCCC--CCCHHHHHHHHHHHHhCCCCEEEEcccccc
Confidence 765 3444433 34 46788999999999998875 777776654
No 105
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.26 E-value=1e-09 Score=103.80 Aligned_cols=178 Identities=17% Similarity=0.274 Sum_probs=119.6
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccC------HHHHHHHHHHH
Q 022752 33 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN------YAALVEAVRIM 105 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~------~~~i~ell~~~ 105 (292)
+...++.++.|||++|.||..+.. +..+..+++++++++....+ .++..|.|+| ..-+.+ .+.+.++++.+
T Consensus 123 ~~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~-~G~~ei~l~~-~~~~~yg~d~~~~~~l~~Ll~~l 200 (418)
T PRK14336 123 PVSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVR-RGSREVVLLG-QNVDSYGHDLPEKPCLADLLSAL 200 (418)
T ss_pred CeEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHH-CCCeEEEEEe-cCccccccCCCCcccHHHHHHHH
Confidence 345566668999999999987643 23467889999999998765 3788999998 765442 13477888888
Q ss_pred hCC-CCCCCCCeEEEEcC---CchhhHHHHhhhCC--CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh-
Q 022752 106 TGL-PFQVSPKRITVSTV---GIVHAINKFHSDLP--GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS- 178 (292)
Q Consensus 106 ~~~-g~~~~~~~i~l~TN---G~~~~~~~l~~~~~--~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~- 178 (292)
.+. + + .++.+.+. .+..++.+++...+ ...+.+.+.+.+++..+.+. ++.+.++..++++ .+++.
T Consensus 201 ~~~~~--~--~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~---R~~~~~~~~~~i~-~lr~~~ 272 (418)
T PRK14336 201 HDIPG--L--LRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMR---RGYTNQQYRELVE-RLKTAM 272 (418)
T ss_pred HhcCC--c--cEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhC---CCCCHHHHHHHHH-HHHhhC
Confidence 764 3 1 34555432 12223223232221 23466888999999988774 3467888888884 45554
Q ss_pred -CCeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 179 -QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 179 -~~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
+..+...+++ +|| ++++++++.++++.++++. +++.+|.|..
T Consensus 273 pgi~i~~d~IvGfPG--ET~edf~~tl~fi~~~~~~~~~v~~ysp~p 317 (418)
T PRK14336 273 PDISLQTDLIVGFPS--ETEEQFNQSYKLMADIGYDAIHVAAYSPRP 317 (418)
T ss_pred CCCEEEEEEEEECCC--CCHHHHHHHHHHHHhcCCCEEEeeecCCCC
Confidence 5555444443 354 6788999999999998765 7777777753
No 106
>PLN02428 lipoic acid synthase
Probab=99.25 E-value=2.1e-09 Score=98.27 Aligned_cols=203 Identities=15% Similarity=0.162 Sum_probs=132.0
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhccCCcceEEEecCCc----cccCHHHHHHHHHHHhCC
Q 022752 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE----PLNNYAALVEAVRIMTGL 108 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE----Pll~~~~i~ell~~~~~~ 108 (292)
..++.+ .+.+|+.+|.||..+.........++++.+.+..+.. .+++.+.|+| |+ |-...+.+.++++.+++.
T Consensus 102 taT~mi-lg~gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v~~-~Glk~vvltS-g~rddl~D~ga~~~~elir~Ir~~ 178 (349)
T PLN02428 102 TATIMI-LGDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIAS-WGVDYVVLTS-VDRDDLPDGGSGHFAETVRRLKQL 178 (349)
T ss_pred eEEEEE-ecCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHH-cCCCEEEEEE-cCCCCCCcccHHHHHHHHHHHHHh
Confidence 344444 3699999999998865432334445665555555444 3678899999 74 444466889999999986
Q ss_pred CCCCCCCeEEEEcCCch--hh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh--CCeEE
Q 022752 109 PFQVSPKRITVSTVGIV--HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS--QQKIF 183 (292)
Q Consensus 109 g~~~~~~~i~l~TNG~~--~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~--~~~v~ 183 (292)
. +...+.+.|-+.. .+ +..+.+++. ..+...+++ .+..+..+.. ...++++.++.++ .+++. |..
T Consensus 179 ~---P~i~Ie~L~pdf~~d~elL~~L~eAG~-d~i~hnlET-v~rL~~~Ir~--~~~sye~~Le~L~-~ak~~~pGi~-- 248 (349)
T PLN02428 179 K---PEILVEALVPDFRGDLGAVETVATSGL-DVFAHNIET-VERLQRIVRD--PRAGYKQSLDVLK-HAKESKPGLL-- 248 (349)
T ss_pred C---CCcEEEEeCccccCCHHHHHHHHHcCC-CEEccCccC-cHHHHHHhcC--CCCCHHHHHHHHH-HHHHhCCCCe--
Confidence 3 2356666655543 22 456666553 335556665 5677777742 2368899999995 45555 544
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEec-CCCCCCCCc-CCCcHHHHHHHHHHHHhcCCeE
Q 022752 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPF-NPIGSVSQF-RTSSDDKVSSFQKILRGSYNIR 249 (292)
Q Consensus 184 i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~-~p~~~~~~~-~~~~~e~l~~~~~~l~~~~g~~ 249 (292)
+..-+|=|+.++.+++.+++++|.++++. +.+-+| .|...+..+ .-..+++.+.++++.. +.|+.
T Consensus 249 tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~-~~gf~ 316 (349)
T PLN02428 249 TKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGE-EMGFR 316 (349)
T ss_pred EEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHH-HcCCc
Confidence 44445557788999999999999999987 434354 343211111 2257788888988888 67874
No 107
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.24 E-value=2e-09 Score=102.87 Aligned_cols=179 Identities=13% Similarity=0.204 Sum_probs=115.8
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCC-CcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCH--------HHHHHHHHH
Q 022752 34 STLCISSQVGCKMGCNFCATGTMG-FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY--------AALVEAVRI 104 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~-~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~--------~~i~ell~~ 104 (292)
..-++.++.|||++|.||..+... ..+..+++++++++...... ++..|.|+| .....+. ..+.++++.
T Consensus 152 ~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~-G~~ei~l~g-~~~~~y~~~~~~~~~~~~~~Ll~~ 229 (455)
T PRK14335 152 FQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEK-GVREITLLG-QNVNSYRGRDREGNIVTFPQLLRH 229 (455)
T ss_pred ceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHC-CCeEEEEEe-ecccccccccccCCccCHHHHHHH
Confidence 445666679999999999876432 33567899999999886653 788999998 6554421 135677776
Q ss_pred Hh---CCCCCCCCCeEEEE-cC--CchhhHHHHhhhC--CCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHH
Q 022752 105 MT---GLPFQVSPKRITVS-TV--GIVHAINKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176 (292)
Q Consensus 105 ~~---~~g~~~~~~~i~l~-TN--G~~~~~~~l~~~~--~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~ 176 (292)
+. +...++ ..+.+. ++ .+..++.+++... .-..+.+.+.+.+++..+.+ +++.+.+++.+.++. ++
T Consensus 230 l~~~~~~~~~i--~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m---~R~~t~e~~~~~v~~-ir 303 (455)
T PRK14335 230 IVRRAEVTDQI--RWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRM---NRSYTREHYLSLVGK-LK 303 (455)
T ss_pred HHHhhcccCCc--eEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHc---CCCCCHHHHHHHHHH-HH
Confidence 63 111111 234332 22 2223333333222 12456689999999998876 345788899999854 45
Q ss_pred hh--CCeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 177 NS--QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 177 ~~--~~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
+. +..+...+++ +|| ++++++++.++++.++++. +++.+|.|.+
T Consensus 304 ~~~pgi~i~~d~IvGfPg--ET~edf~~Tl~~i~~l~~~~~~~~~~sp~p 351 (455)
T PRK14335 304 ASIPNVALSTDILIGFPG--ETEEDFEQTLDLMREVEFDSAFMYHYNPRE 351 (455)
T ss_pred HhCCCCEEEEEEEEeCCC--CCHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence 54 5555544444 344 6889999999999999875 7777777753
No 108
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.22 E-value=1.1e-09 Score=104.34 Aligned_cols=178 Identities=13% Similarity=0.268 Sum_probs=116.4
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccC--------HHHHHHHH
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN--------YAALVEAV 102 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~--------~~~i~ell 102 (292)
.+...++.++.|||++|.||..+.. +..+..+++++++++..... .++..|.|+| .+...+ ...+.+++
T Consensus 143 ~~~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~-~g~~ei~l~~-~~~~~y~g~d~~~~~~~l~~Ll 220 (438)
T TIGR01574 143 GIYKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAE-KGVREITLLG-QNVNAYRGKDFEGKTMDFSDLL 220 (438)
T ss_pred CceeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHH-cCCeEEEEEe-cccCCccCCCCCCCcccHHHHH
Confidence 3456677788999999999987543 23467889999999988665 3788999988 555443 12467888
Q ss_pred HHHhCC-CCCCCCCeEEEEc-CC--chhhH-HHHhhhCC-CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHH
Q 022752 103 RIMTGL-PFQVSPKRITVST-VG--IVHAI-NKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176 (292)
Q Consensus 103 ~~~~~~-g~~~~~~~i~l~T-NG--~~~~~-~~l~~~~~-~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~ 176 (292)
+.+.+. ++ ..+.+.+ +. ...++ ..+.+... ...+.+.+.+.+++..+.+ +++.+.+++++.++.+ +
T Consensus 221 ~~l~~~~~~----~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m---~R~~t~~~~~~~v~~i-r 292 (438)
T TIGR01574 221 RELSTIDGI----ERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLM---KRGYTREWYLNLVRKL-R 292 (438)
T ss_pred HHHHhcCCc----eEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhc---CCCCCHHHHHHHHHHH-H
Confidence 888754 31 2344332 21 22222 23333221 2356688999999988875 3457888888888544 4
Q ss_pred hh--CCeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 177 NS--QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 177 ~~--~~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
+. +..+...+++ +|| ++++++++.++++.++++. +.+.+|.|.
T Consensus 293 ~~~~~i~i~~d~IvG~Pg--Et~ed~~~tl~~i~~~~~~~~~~~~~sp~ 339 (438)
T TIGR01574 293 AACPNVSISTDIIVGFPG--ETEEDFEETLDLLREVEFDSAFSFIYSPR 339 (438)
T ss_pred HhCCCCeEeeCEEEeCCC--CCHHHHHHHHHHHHhcCCCeeeeEEecCC
Confidence 44 3334333333 344 6789999999999998865 777777765
No 109
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.21 E-value=1.9e-09 Score=99.75 Aligned_cols=196 Identities=16% Similarity=0.188 Sum_probs=127.2
Q ss_pred EEEcCCCCCcCCcCcCCCCCCC---cCCCCHHHHHHHHHHhhccCCcceEEEecCCccc-cCHHHHHHHHHHHhCCCCCC
Q 022752 37 CISSQVGCKMGCNFCATGTMGF---KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL-NNYAALVEAVRIMTGLPFQV 112 (292)
Q Consensus 37 ~is~t~gCNl~C~yC~~~~~~~---~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPl-l~~~~i~ell~~~~~~g~~~ 112 (292)
+++.|.+|+.+|.||..+.... ...++++++++.+.++.. .++..+.++| |+.. +..+.+.++++.+++..
T Consensus 51 ~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~a~~~~~-~G~~~v~l~~-G~~p~~~~~~~~e~i~~Ik~~~--- 125 (351)
T TIGR03700 51 HLNYTNICVNGCAFCAFQRERGEPGAYAMSLEEIVARVKEAYA-PGATEVHIVG-GLHPNLPFEWYLDMIRTLKEAY--- 125 (351)
T ss_pred CcccccccccCCccCceeCCCCCcccCCCCHHHHHHHHHHHHH-CCCcEEEEec-CCCCCCCHHHHHHHHHHHHHHC---
Confidence 3667899999999997753211 123799999999987654 4788999999 8654 44678999999999873
Q ss_pred CCCeEEEEc----------CCchh-h-HHHHhhhCCCceEE-EEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhC
Q 022752 113 SPKRITVST----------VGIVH-A-INKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 179 (292)
Q Consensus 113 ~~~~i~l~T----------NG~~~-~-~~~l~~~~~~~~l~-iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~ 179 (292)
+..++...| .|... + +.+|.+++. ..+. ..+++.+++.+..+.+. +.+.++.++.+ +.+++.|
T Consensus 126 p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGl-d~~~~~g~E~~~~~v~~~i~~~--~~~~~~~l~~i-~~a~~~G 201 (351)
T TIGR03700 126 PDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGL-DSMPGGGAEIFAEEVRQQICPE--KISAERWLEIH-RTAHELG 201 (351)
T ss_pred CCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCC-CcCCCCcccccCHHHHhhcCCC--CCCHHHHHHHH-HHHHHcC
Confidence 123444322 34432 2 556776652 2333 36777788888888643 35678888999 5677788
Q ss_pred CeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE----EEEEecC--CCC-CCCCc--CCCcHHHHHHHHHHHH
Q 022752 180 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV----VNLIPFN--PIG-SVSQF--RTSSDDKVSSFQKILR 243 (292)
Q Consensus 180 ~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~----v~l~p~~--p~~-~~~~~--~~~~~e~l~~~~~~l~ 243 (292)
.++...+++ |..++.++..+.+..+++++.. ..++|++ |.+ +.... ..++..+..+.....+
T Consensus 202 i~~~sg~i~--GlgEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~R 272 (351)
T TIGR03700 202 LKTNATMLY--GHIETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSR 272 (351)
T ss_pred CCcceEEEe--eCCCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHH
Confidence 777655444 5556777777777778877543 2344443 222 33332 4567777666555443
No 110
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.20 E-value=2.3e-09 Score=102.78 Aligned_cols=180 Identities=12% Similarity=0.187 Sum_probs=115.1
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCcccc-----------CHHHHH
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN-----------NYAALV 99 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll-----------~~~~i~ 99 (292)
.+...++.++.|||++|.||..+.. +..+..+++++++++...... ++..|.|+| ..-.. +...+.
T Consensus 166 ~~~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~-g~~eI~l~~-~~~~~y~~d~~~~~~~~~~~l~ 243 (467)
T PRK14329 166 NGVSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAK-GYKEVTLLG-QNVDSYLWYGGGLKKDEAVNFA 243 (467)
T ss_pred CCcEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHC-CCeEEEEEe-ecccccccccCCccccccccHH
Confidence 4456677778999999999987543 234678899999999986653 678888877 22110 112467
Q ss_pred HHHHHHhCCCCCCCCCeEEEEc---CCchhhHHHHhhhC--CCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHH
Q 022752 100 EAVRIMTGLPFQVSPKRITVST---VGIVHAINKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174 (292)
Q Consensus 100 ell~~~~~~g~~~~~~~i~l~T---NG~~~~~~~l~~~~--~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~ 174 (292)
++++.+.+.. ....+.+.+ +.+..++.+++... .-..+.+.+.+.+++..+.+. ++.+.+++.+.++.
T Consensus 244 ~Ll~~l~~~~---~~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~---R~~t~~~~~~~i~~- 316 (467)
T PRK14329 244 QLLEMVAEAV---PDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMN---RKYTREWYLDRIDA- 316 (467)
T ss_pred HHHHHHHhcC---CCcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcC---CCCCHHHHHHHHHH-
Confidence 7777776541 013455543 22223333333322 124577899999999988773 45677788888844
Q ss_pred HHhh--CCeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 175 QKNS--QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 175 ~~~~--~~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
+++. +..+...+++ +|| ++++++++.++++.++++. +++.+|.|.+
T Consensus 317 ir~~~~~~~i~~d~IvGfPg--ET~edf~~tl~~i~~l~~~~~~v~~~sp~p 366 (467)
T PRK14329 317 IRRIIPDCGISTDMIAGFPT--ETEEDHQDTLSLMEEVGYDFAFMFKYSERP 366 (467)
T ss_pred HHHhCCCCEEEEeEEEeCCC--CCHHHHHHHHHHHHhhCCCeEeeeEecCCC
Confidence 4443 3334443333 244 6889999999999998865 6666776653
No 111
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.20 E-value=1.5e-09 Score=103.40 Aligned_cols=177 Identities=11% Similarity=0.219 Sum_probs=116.7
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCH------HHHHHHHHHH
Q 022752 33 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY------AALVEAVRIM 105 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~------~~i~ell~~~ 105 (292)
+...++.++.|||++|.||..+.. +..+..+++++++++..... .+...|.|+| .+-+.+- ..+.++++.+
T Consensus 146 ~~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~-~G~~ei~l~~-~~~~~yg~d~~~~~~l~~Ll~~l 223 (439)
T PRK14328 146 KVKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVS-EGYKEVTLLG-QNVNSYGKDLEEKIDFADLLRRV 223 (439)
T ss_pred CcEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHH-CCCcEEEEec-cccCcCCcCCCCCcCHHHHHHHH
Confidence 345677888999999999988643 23467889999999988665 3788999999 6644320 2366777777
Q ss_pred hCC-CCCCCCCeEEEEc-C--CchhhHH-HHhhhCC-CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh-
Q 022752 106 TGL-PFQVSPKRITVST-V--GIVHAIN-KFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS- 178 (292)
Q Consensus 106 ~~~-g~~~~~~~i~l~T-N--G~~~~~~-~l~~~~~-~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~- 178 (292)
.+. + + ..+.+.+ + .+.+++. .+.+... -..+.+.+.+.+++..+.+. ++.+.+++++.++. +++.
T Consensus 224 ~~~~~--~--~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~---R~~~~~~~~~~i~~-lr~~~ 295 (439)
T PRK14328 224 NEIDG--L--ERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMN---RHYTREYYLELVEK-IKSNI 295 (439)
T ss_pred HhcCC--C--cEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCC---CCCCHHHHHHHHHH-HHHhC
Confidence 764 3 1 2344433 2 1222322 3333221 23577889999999988763 44678888888854 4444
Q ss_pred -CCeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 179 -QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 179 -~~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
+..+...+++ +|| ++++++++.++++.++++. +++.+|.|.
T Consensus 296 ~~i~i~~d~IvG~Pg--ET~ed~~~tl~~i~~l~~~~~~~~~~sp~ 339 (439)
T PRK14328 296 PDVAITTDIIVGFPG--ETEEDFEETLDLVKEVRYDSAFTFIYSKR 339 (439)
T ss_pred CCCEEEEEEEEECCC--CCHHHHHHHHHHHHhcCCCcccceEecCC
Confidence 3434444333 344 6789999999999998765 677777665
No 112
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.20 E-value=2.8e-09 Score=100.94 Aligned_cols=179 Identities=12% Similarity=0.254 Sum_probs=116.9
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCCC-CcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccC---------HHHHHHH
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTMG-FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN---------YAALVEA 101 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~~-~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~---------~~~i~el 101 (292)
.+...++.++.|||++|.||..+... ..+..+++++++++..... .+.+.|.|+| ..-..+ ...+.++
T Consensus 125 ~~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~-~G~keI~l~~-~~~~~yg~d~~~~~~~~~l~~L 202 (420)
T PRK14339 125 SPYKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVN-NGAKEIFLLG-QNVNNYGKRFSSEHEKVDFSDL 202 (420)
T ss_pred CCeEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHH-CCCcEEEEee-eccccccCCCcCCcccccHHHH
Confidence 34556677789999999999886432 2345789999999988655 3788999988 554321 0236788
Q ss_pred HHHHhCC-CCCCCCCeEEEE-cCC--chhhHHHHhhhCC--CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHH
Q 022752 102 VRIMTGL-PFQVSPKRITVS-TVG--IVHAINKFHSDLP--GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175 (292)
Q Consensus 102 l~~~~~~-g~~~~~~~i~l~-TNG--~~~~~~~l~~~~~--~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~ 175 (292)
++.+.+. |+ ..+.+. ++. ..+++.+++...+ -..+.|.+.+.+++..+.+. ++.+.+++++.++.+
T Consensus 203 l~~l~~~~g~----~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~---R~~t~~~~~~~v~~l- 274 (420)
T PRK14339 203 LDKLSEIEGL----ERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMK---RGYTKEWFLNRAEKL- 274 (420)
T ss_pred HHHHhcCCCc----cEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhcc---CCCCHHHHHHHHHHH-
Confidence 8887764 42 234443 222 2223223332221 23577899999999988774 456788888888544
Q ss_pred Hhh--CCeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 176 KNS--QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 176 ~~~--~~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
++. +..+...+++ +|| ++++++++.++++.++++. +++.+|.|.+
T Consensus 275 r~~~p~i~i~~d~IvGfPg--ETeedf~~Tl~fl~~l~~~~~~~f~~sp~p 323 (420)
T PRK14339 275 RALVPEVSISTDIIVGFPG--ESDKDFEDTMDVLEKVRFEQIFSFKYSPRP 323 (420)
T ss_pred HHHCCCCEEEEEEEEECCC--CCHHHHHHHHHHHHhcCCCEEeeEecCCCC
Confidence 444 3444443333 244 6889999999999998876 6776777763
No 113
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.20 E-value=9.1e-09 Score=93.30 Aligned_cols=193 Identities=15% Similarity=0.206 Sum_probs=122.7
Q ss_pred CCCCCc--------CCcCcCCCCCCCcC---CCCHHHHHHHHHHhhc---cCCcceEEEecCCcccc-CHHHHHHHHHHH
Q 022752 41 QVGCKM--------GCNFCATGTMGFKS---NLSSGEIVEQLVHASR---LSNIRNVVFMGMGEPLN-NYAALVEAVRIM 105 (292)
Q Consensus 41 t~gCNl--------~C~yC~~~~~~~~~---~~~~eei~~~i~~~~~---~~~~~~I~fsG~GEPll-~~~~i~ell~~~ 105 (292)
.-.||. .|.||......... ..+.+++.+++.+... ..+...+.|.| |.|+. ..+.+.++++.+
T Consensus 25 g~~cpnrdg~~~~~gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~g-gt~t~l~~~~L~~l~~~i 103 (302)
T TIGR01212 25 GFSCPNRDGTKGRGGCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQA-YTNTYAPVEVLKEMYEQA 103 (302)
T ss_pred CCCCCCCCCCCCCCCcccCCCCCCccccccccccCCCHHHHHHHHHHHhhccCEEEEEEEC-CCcCCCCHHHHHHHHHHH
Confidence 455766 59999885433222 1233444555544322 11233477888 99994 567889999999
Q ss_pred hCCCCCCCCCeEEEEcCCch--hhHHHHhhhCC--Cc--eEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhC
Q 022752 106 TGLPFQVSPKRITVSTVGIV--HAINKFHSDLP--GL--NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 179 (292)
Q Consensus 106 ~~~g~~~~~~~i~l~TNG~~--~~~~~l~~~~~--~~--~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~ 179 (292)
++.. ....+++.|+--. .+..+++..+. .. .+.+.+++.+++..+.+. ++.+.+++++++ +.++++|
T Consensus 104 ~~~~---~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~---Rg~t~~~~~~ai-~~l~~~g 176 (302)
T TIGR01212 104 LSYD---DVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKIN---RGHDFACYVDAV-KRARKRG 176 (302)
T ss_pred hCCC---CEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHc---CcChHHHHHHHH-HHHHHcC
Confidence 8752 1246777776421 22222222211 13 356788999999998874 456889999999 5577788
Q ss_pred CeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC--------CCCCcCCCcHHH-HHHHHHHHH
Q 022752 180 QKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--------SVSQFRTSSDDK-VSSFQKILR 243 (292)
Q Consensus 180 ~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~--------~~~~~~~~~~e~-l~~~~~~l~ 243 (292)
..+.+.+++ +| .++.+++.+.++++.++++. +.+.+++|.. ....+.+++.++ +..+...++
T Consensus 177 i~v~~~lI~GlP--get~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~ 249 (302)
T TIGR01212 177 IKVCSHVILGLP--GEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLE 249 (302)
T ss_pred CEEEEeEEECCC--CCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 877665544 34 46889999999999999876 7777776653 123456667766 555666666
No 114
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.18 E-value=4.5e-09 Score=100.32 Aligned_cols=180 Identities=13% Similarity=0.244 Sum_probs=116.5
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccC-------HHHHHHHHHH
Q 022752 33 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN-------YAALVEAVRI 104 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~-------~~~i~ell~~ 104 (292)
+...++.++.|||++|.||..+.. +..+..+++++++++...... +++.|.|+| ..-..+ ...+.++++.
T Consensus 147 ~~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~-G~~eI~l~~-~~~~~yg~d~~~~~~~l~~Ll~~ 224 (446)
T PRK14337 147 PASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDR-GAREITLLG-QNVNSYGQDKHGDGTSFAQLLHK 224 (446)
T ss_pred CcEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHC-CCeEEEEEe-cCccccccCCCCCCccHHHHHHH
Confidence 455677778999999999987543 234678899999999987653 788999988 443221 1246677777
Q ss_pred HhCC-CCCCCCCeEEEEc---CCchhhHHHHhhhCC--CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh
Q 022752 105 MTGL-PFQVSPKRITVST---VGIVHAINKFHSDLP--GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178 (292)
Q Consensus 105 ~~~~-g~~~~~~~i~l~T---NG~~~~~~~l~~~~~--~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~ 178 (292)
+.+. |+ ..+.+.+ +.+.+++.+++...+ -..+.+.+.+.+++..+.+. ++++.+++.+.++.+ ++.
T Consensus 225 l~~~~g~----~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~---R~~t~e~~~~~v~~l-r~~ 296 (446)
T PRK14337 225 VAALPGL----ERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMG---RKYDMARYLDIVTDL-RAA 296 (446)
T ss_pred HHhcCCC----cEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCC---CCCCHHHHHHHHHHH-HHh
Confidence 7664 31 2344432 222333323332221 23577889999999988763 457788888888544 443
Q ss_pred CCeEEEEEEEeCC-CCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 179 QQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 179 ~~~v~i~~vl~~g-~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
...+.+.+-++-| -+++++++++.++++.++++. +++.+|.|.+
T Consensus 297 ~~~i~i~~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~p 342 (446)
T PRK14337 297 RPDIALTTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRP 342 (446)
T ss_pred CCCCeEEEeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCC
Confidence 2223333333322 246789999999999999876 6677777653
No 115
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.18 E-value=1.8e-08 Score=91.79 Aligned_cols=182 Identities=13% Similarity=0.174 Sum_probs=116.0
Q ss_pred CCCceEEEEEcCCCCCc----CCcCcCCCCCCCcCCCCHHHHHHHHHHhhccCCcc----e-EEEecCC---cccc-CHH
Q 022752 30 GGPRSTLCISSQVGCKM----GCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR----N-VVFMGMG---EPLN-NYA 96 (292)
Q Consensus 30 ~~~r~~l~is~t~gCNl----~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~~~~~----~-I~fsG~G---EPll-~~~ 96 (292)
++.+.++++ +|.||++ +|.||...... .+..+++.+.+++.+.....+.. . -.|++ | +|.. .++
T Consensus 12 ~~~~~~~i~-~srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~s-gsf~D~~~~~~~ 88 (313)
T TIGR01210 12 PGKSLTIIL-RTRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTS-GSFLDDREVPKE 88 (313)
T ss_pred ccceEEEEE-eCCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcccccEEEEEecC-CCcCCcCcCCHH
Confidence 344455544 5799999 59999644322 23568899999988765422221 1 23666 6 6654 456
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCc-h-hh-HHHHhhhCCCceEEEEecCCChHHHh-hhcCcccCccHHHHHHHHH
Q 022752 97 ALVEAVRIMTGLPFQVSPKRITVSTVGI-V-HA-INKFHSDLPGLNLAVSLHAPVQDVRC-QIMPAARAFPLEKLMNALK 172 (292)
Q Consensus 97 ~i~ell~~~~~~g~~~~~~~i~l~TNG~-~-~~-~~~l~~~~~~~~l~iSld~~~~~~~~-~i~~~~~~~~~~~vi~~l~ 172 (292)
.+.++++.+++.+ .+ ..+++.|+-- + .+ +..+.+.+....+.+.+++.+++..+ .+ +++.+.+++++++
T Consensus 89 ~~~~i~~~l~~~~-~~--~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~i---nKg~t~~~~~~ai- 161 (313)
T TIGR01210 89 TRNYIFEKIAQRD-NL--KEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSI---NKGSTFEDFIRAA- 161 (313)
T ss_pred HHHHHHHHHHhcC-Cc--ceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhh---CCCCCHHHHHHHH-
Confidence 7788888888753 11 3567777652 2 22 34555544223577899999999985 55 4567899999999
Q ss_pred HHHHhhCCeEEEEEEE-eCCCC--ChHHHHHHHHHHHhhCCcEEEEEecCCC
Q 022752 173 EYQKNSQQKIFIEYIM-LDGVN--DEEQHAHQLGKLLETFQVVVNLIPFNPI 221 (292)
Q Consensus 173 ~~~~~~~~~v~i~~vl-~~g~n--d~~~~l~~l~~~l~~~~~~v~l~p~~p~ 221 (292)
+.++++|..+...+++ .|+.. ++.+++.+.++++..++-.+.+.|.++.
T Consensus 162 ~~~~~~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~~~vs~~~l~v~ 213 (313)
T TIGR01210 162 ELARKYGAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVTDTVSINPTNVQ 213 (313)
T ss_pred HHHHHcCCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcCCcEEEECCEEe
Confidence 5677888887776655 24322 3345666677888777633666666554
No 116
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.15 E-value=5.4e-09 Score=101.01 Aligned_cols=176 Identities=15% Similarity=0.317 Sum_probs=115.2
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCcc------ccCHHHHHHHHHHHh
Q 022752 34 STLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEP------LNNYAALVEAVRIMT 106 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEP------ll~~~~i~ell~~~~ 106 (292)
...++.++.|||++|.||..+.. +..+..+++++++++...... ++..|.|+| -.= +.+...+.++++.+.
T Consensus 157 ~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~-g~~ei~l~d-~n~~~yG~d~~~~~~l~~Ll~~l~ 234 (502)
T PRK14326 157 YAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDE-GVLEVTLLG-QNVNAYGVSFGDRGAFSKLLRACG 234 (502)
T ss_pred ceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHC-CCceEEEEe-ecccccccCCCCHHHHHHHHHHHH
Confidence 44577778999999999988643 234678899999999887653 688888877 322 123345677777776
Q ss_pred CC-CCCCCCCeEEEEcC---CchhhHHHHhhhCC--CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh--
Q 022752 107 GL-PFQVSPKRITVSTV---GIVHAINKFHSDLP--GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-- 178 (292)
Q Consensus 107 ~~-g~~~~~~~i~l~TN---G~~~~~~~l~~~~~--~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~-- 178 (292)
+. ++ ..+.+.+. .+..++.+++.... -..+.+.+.+.+++..+.+. ++++.+++.+.++. +++.
T Consensus 235 ~i~~l----~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~---R~~t~~~~~~~v~~-lr~~~~ 306 (502)
T PRK14326 235 EIDGL----ERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMR---RSYRSERFLGILEK-VRAAMP 306 (502)
T ss_pred hcCCc----cEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcC---CCCCHHHHHHHHHH-HHHhCC
Confidence 54 31 13444431 12223333332222 24567899999999988763 45788888888854 4443
Q ss_pred CCeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 179 QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 179 ~~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
+..+...+++ +|| ++++++++.++++.++++. +.+.+|.|.
T Consensus 307 ~i~i~~~~IvGfPg--ET~edf~~Tl~~i~~~~~~~~~~f~~sp~ 349 (502)
T PRK14326 307 DAAITTDIIVGFPG--ETEEDFQATLDVVREARFSSAFTFQYSKR 349 (502)
T ss_pred CCeEEEEEEEECCC--CCHHHHHHHHHHHHHcCCCEEEEEeecCC
Confidence 4444544433 244 6889999999999998765 555566665
No 117
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.15 E-value=4.4e-09 Score=100.09 Aligned_cols=178 Identities=16% Similarity=0.294 Sum_probs=113.5
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCC-CcCCCCHHHHHHHHHHhhccCCcceEEEec-----CCccccCHHHHHHHHHHHhC
Q 022752 34 STLCISSQVGCKMGCNFCATGTMG-FKSNLSSGEIVEQLVHASRLSNIRNVVFMG-----MGEPLNNYAALVEAVRIMTG 107 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~-~~~~~~~eei~~~i~~~~~~~~~~~I~fsG-----~GEPll~~~~i~ell~~~~~ 107 (292)
...++..+.|||++|.||..+... ..+..+++++++++....+. +++.|.|+| +|-.+.+...+.++++.+.+
T Consensus 140 ~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~-g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~ 218 (434)
T PRK14330 140 HHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQ-GYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK 218 (434)
T ss_pred cEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHHC-CCcEEEEEEecccccccCCCCCccHHHHHHHHHh
Confidence 445566679999999999875332 24678899999999886653 678888876 12222222346677776655
Q ss_pred C-CCCCCCCeEEEEc-C--CchhhHHHHhhhCCC--ceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh--C
Q 022752 108 L-PFQVSPKRITVST-V--GIVHAINKFHSDLPG--LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS--Q 179 (292)
Q Consensus 108 ~-g~~~~~~~i~l~T-N--G~~~~~~~l~~~~~~--~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~--~ 179 (292)
. ++ ..+.+.+ + ....++.+++...+. ..+.|.+.+.+++..+.+. ++.+.+++.+.++. +++. +
T Consensus 219 ~~~~----~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~---R~~~~~~~~~~i~~-lr~~~~~ 290 (434)
T PRK14330 219 IEGI----ERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMN---RRYTREEYLELIEK-IRSKVPD 290 (434)
T ss_pred cCCc----eEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcC---CCCCHHHHHHHHHH-HHHhCCC
Confidence 4 31 1222221 1 222233333332221 2467899999999988763 34678888888854 4443 4
Q ss_pred CeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 180 QKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 180 ~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
..+...+++ +|| ++++++++.++++.++++. +++.+|.|.+
T Consensus 291 i~i~~d~IvGfPg--ET~edf~~tl~fi~~~~~~~~~~~~~sp~p 333 (434)
T PRK14330 291 ASISSDIIVGFPT--ETEEDFMETVDLVEKAQFERLNLAIYSPRE 333 (434)
T ss_pred CEEEEEEEEECCC--CCHHHHHHHHHHHHhcCCCEEeeeeccCCC
Confidence 444444443 344 6888999999999999876 7777777753
No 118
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=7.7e-09 Score=97.12 Aligned_cols=183 Identities=14% Similarity=0.310 Sum_probs=123.1
Q ss_pred CCceEEEEEcCCCCCcCCcCcCCCCCCC-cCCCCHHHHHHHHHHhhccCCcceEEEecC-----CccccC-HHHHHHHHH
Q 022752 31 GPRSTLCISSQVGCKMGCNFCATGTMGF-KSNLSSGEIVEQLVHASRLSNIRNVVFMGM-----GEPLNN-YAALVEAVR 103 (292)
Q Consensus 31 ~~r~~l~is~t~gCNl~C~yC~~~~~~~-~~~~~~eei~~~i~~~~~~~~~~~I~fsG~-----GEPll~-~~~i~ell~ 103 (292)
.....-|+.++.|||.+|.||-.+.... .+..+++++++++..+.. .|.+.|+|+|. |--+-. ...+.+|++
T Consensus 141 ~~~~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~-~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~ 219 (437)
T COG0621 141 EGGVRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVA-QGVKEIVLTGQDVNAYGKDLGGGKPNLADLLR 219 (437)
T ss_pred CCCeEEEEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHH-CCCeEEEEEEEehhhccccCCCCccCHHHHHH
Confidence 3457777778899999999998865433 466889999999998765 48899999985 333321 133677777
Q ss_pred HHhCC-CCCCCCCeEEEEcCC---chhhHHHHhhhCCCc--eEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHh
Q 022752 104 IMTGL-PFQVSPKRITVSTVG---IVHAINKFHSDLPGL--NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 177 (292)
Q Consensus 104 ~~~~~-g~~~~~~~i~l~TNG---~~~~~~~l~~~~~~~--~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~ 177 (292)
.+.+. | ..++.+.|-= +..++-++....+.+ .+-+++.+.++.+-+... ++++.++.++.++++. +
T Consensus 220 ~l~~I~G----~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~---R~yt~e~~~~~i~k~R-~ 291 (437)
T COG0621 220 ELSKIPG----IERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMK---RGYTVEEYLEIIEKLR-A 291 (437)
T ss_pred HHhcCCC----ceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhC---CCcCHHHHHHHHHHHH-H
Confidence 77775 3 1456665542 222232333332222 345788999999988774 3467777777775543 3
Q ss_pred hCCeEEEEEEEeCCC-CChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 178 SQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 178 ~~~~v~i~~vl~~g~-nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
.-..+.+.+-++-|+ ..+++++++..+++++.++. +++.+|.|-.
T Consensus 292 ~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpRp 338 (437)
T COG0621 292 ARPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRP 338 (437)
T ss_pred hCCCceEeccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCC
Confidence 334566666554332 35789999999999999876 8888998764
No 119
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.13 E-value=2.8e-09 Score=97.49 Aligned_cols=196 Identities=11% Similarity=0.109 Sum_probs=120.8
Q ss_pred EEEEcCCCCCcCCcCcCCCCCCC---cCCCCHHHHHHHHHHhhccCCcceEEEecCCc-cccC----------------H
Q 022752 36 LCISSQVGCKMGCNFCATGTMGF---KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNN----------------Y 95 (292)
Q Consensus 36 l~is~t~gCNl~C~yC~~~~~~~---~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE-Pll~----------------~ 95 (292)
.++..|++|+.+|.||.-..... ...++++++++++.+... .++..+.++| |+ |-.. .
T Consensus 6 ~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~-~G~~ei~l~~-G~~p~~~~~~~~~~l~~~~~~~~~ 83 (322)
T TIGR03550 6 VFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAA-AGCTEALFTF-GEKPEERYPEAREWLAEMGYDSTL 83 (322)
T ss_pred EEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHH-CCCCEEEEec-CCCccccHHHHHHHHHhcCCccHH
Confidence 45566899999999997643222 236899999999998766 3788899998 87 4332 2
Q ss_pred HHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh-HHHHhhhCCCceEEEEecCCChHHHhhhcCc-ccCccHHHHHHHHH
Q 022752 96 AALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPA-ARAFPLEKLMNALK 172 (292)
Q Consensus 96 ~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~-~~~~~~~~vi~~l~ 172 (292)
+.+.++++.+++. + ...++.......+ +..|.+++ .++.+++++.++..+..+... ..+.++++.++.+
T Consensus 84 ~~~~~~~~~i~~e~~-----~~~~~~~g~lt~e~l~~Lk~aG--~~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i- 155 (322)
T TIGR03550 84 EYLRELCELALEETG-----LLPHTNPGVMSRDELARLKPVN--ASMGLMLETTSERLCKGEAHYGSPGKDPAVRLETI- 155 (322)
T ss_pred HHHHHHHHHHHHhcC-----CccccCCCCCCHHHHHHHHhhC--CCCCcchhhhccccccccccCCCCCCCHHHHHHHH-
Confidence 5677778888754 3 2334333332222 45555554 334455666555543322111 1122355678888
Q ss_pred HHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCC-----cE-EEEEecCCCC--CCCCcCCCcHHHHHHHHHHHH
Q 022752 173 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-----VV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 173 ~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~-----~~-v~l~p~~p~~--~~~~~~~~~~e~l~~~~~~l~ 243 (292)
+.+++.|.++...++ =|..++.+++.+.+..+++++ +. +-+.+|.|.. +....++++..+..+.....+
T Consensus 156 ~~a~~~Gi~~~s~~i--~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~R 232 (322)
T TIGR03550 156 EDAGRLKIPFTTGIL--IGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVAR 232 (322)
T ss_pred HHHHHcCCCccceee--EeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHH
Confidence 456777877555443 356788889999988888765 42 5556777762 333455667777766555443
No 120
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=99.12 E-value=4.9e-09 Score=96.12 Aligned_cols=220 Identities=16% Similarity=0.227 Sum_probs=141.3
Q ss_pred CcCcCCCCCCC-cCCCCHHHHHHHHHHh--hccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 022752 48 CNFCATGTMGF-KSNLSSGEIVEQLVHA--SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 124 (292)
Q Consensus 48 C~yC~~~~~~~-~~~~~~eei~~~i~~~--~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~ 124 (292)
|.||+...... .....+..+.+...+. ..+....+++.+|.|+++.+ +++.+..++++..+.+-...-..++.||.
T Consensus 44 C~~cy~~v~~~~~~~~~~~~v~~e~~~~lg~~~e~~~~~~~~~~~d~~c~-p~le~~~~r~~~~~~d~~~rL~~tsG~~~ 122 (414)
T COG1625 44 CDDCYLSVNELDTGFIPPLMVEKEPDEDLGLEFEEVLGAKQCGNGDTFCY-PDLEPRGRRARLYYKDDDIRLSFTSGSGF 122 (414)
T ss_pred ccceeeEEecccCCCCCHhHhhcccccccccccccccceeecCCCCcccC-cchhhhhhHHHhhcCCccceeeeeeccce
Confidence 88888753211 1334455555544431 11112237888887999986 66899999999874222123344556664
Q ss_pred hh-h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHH
Q 022752 125 VH-A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 202 (292)
Q Consensus 125 ~~-~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l 202 (292)
.. . .+++.+.+ ...+.||+++.+++.|+++|+. ...+++++.++.++ +..+.+..+++++||+||- +++.+.
T Consensus 123 ~lt~~~~~i~~~g-vdev~~SVhtT~p~lR~klm~n---~~A~~~le~L~~f~-~~~~~v~a~iVl~PGvNdg-e~L~kT 196 (414)
T COG1625 123 TLTNRAERIIDAG-VDEVYFSVHTTNPELRAKLMKN---PNAEQLLELLRRFA-ERCIEVHAQIVLCPGVNDG-EELEKT 196 (414)
T ss_pred eccchHHHHHHcC-CCeeEEEEeeCCHHHHHHHhcC---CcHHHHHHHHHHHH-HhhhheeeEEEEcCCcCcH-HHHHHH
Confidence 33 2 45666654 3568999999999999999853 34566899996554 5567899999999999986 588888
Q ss_pred HHHHhhCCcE-EEEEecCCCC--C-C-CCcCCCcHHHHHHHHHHHH---hcCC-eEEEeec----cccccc---cccccc
Q 022752 203 GKLLETFQVV-VNLIPFNPIG--S-V-SQFRTSSDDKVSSFQKILR---GSYN-IRTTVRK----QMGQDI---SGACGQ 266 (292)
Q Consensus 203 ~~~l~~~~~~-v~l~p~~p~~--~-~-~~~~~~~~e~l~~~~~~l~---~~~g-~~v~ir~----~~g~~~---~~~c~~ 266 (292)
.+-|.+.|.+ +.++.+.|.| . . ...+++.++++.+++++.+ ++.| +.|.-.+ ..|... ..+-|+
T Consensus 197 ~~dL~~~g~~~~~~~~~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E~~~~~V~g~Pl~~~~~~e~f~~~~~~v~~ 276 (414)
T COG1625 197 LEDLEEWGAHEVILMRVVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDRELGSIRVTGTPLPDALLGEPFPQLEDGVGE 276 (414)
T ss_pred HHHHHHhCcCceeEEEeecceeeecCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeCCCCCchhhcCcchhhhccchh
Confidence 8889888776 4444355655 1 1 1356678888888877665 3567 6654332 223332 245566
Q ss_pred ccccCcCc
Q 022752 267 LVVNLPDK 274 (292)
Q Consensus 267 ~~~~~~~~ 274 (292)
++..+|+.
T Consensus 277 i~~~L~~~ 284 (414)
T COG1625 277 IREFLPEV 284 (414)
T ss_pred hhhhcccc
Confidence 66666654
No 121
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.11 E-value=2.5e-08 Score=93.95 Aligned_cols=208 Identities=11% Similarity=0.110 Sum_probs=131.6
Q ss_pred CCceEEEEEcCCCCCcCCcCcCCCCCCC---c--C-CCCH----HHHHHHHHHhh-ccCCcceEEEecCCcccc-CHHHH
Q 022752 31 GPRSTLCISSQVGCKMGCNFCATGTMGF---K--S-NLSS----GEIVEQLVHAS-RLSNIRNVVFMGMGEPLN-NYAAL 98 (292)
Q Consensus 31 ~~r~~l~is~t~gCNl~C~yC~~~~~~~---~--~-~~~~----eei~~~i~~~~-~~~~~~~I~fsG~GEPll-~~~~i 98 (292)
+....||+.+ .=|..+|.||.-..... . . .... +.+.+++.... ....+..|.|-| |.|++ ..+.+
T Consensus 8 ~~~~~lYiHi-PFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GG-GTps~l~~~~l 85 (400)
T PRK07379 8 LLPTSAYIHI-PFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGG-GTPSLLSVEQL 85 (400)
T ss_pred CCccEEEEEe-ccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECC-CccccCCHHHH
Confidence 3456788876 78999999997632110 0 1 1112 23344443322 123578899999 99995 67889
Q ss_pred HHHHHHHhCCCCCCC-CCeEEEEcCC-ch-hh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHH
Q 022752 99 VEAVRIMTGLPFQVS-PKRITVSTVG-IV-HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174 (292)
Q Consensus 99 ~ell~~~~~~g~~~~-~~~i~l~TNG-~~-~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~ 174 (292)
.++++.+++. +++. ...+++.+|- .+ .+ +..+.+.+ ...+.|.+.+.+++..+.+. +..+.+++++++ +.
T Consensus 86 ~~ll~~i~~~-~~~~~~~eit~E~~P~~lt~e~l~~l~~~G-vnrislGvQS~~d~~L~~l~---R~~~~~~~~~ai-~~ 159 (400)
T PRK07379 86 ERILTTLDQR-FGIAPDAEISLEIDPGTFDLEQLQGYRSLG-VNRVSLGVQAFQDELLALCG---RSHRVKDIFAAV-DL 159 (400)
T ss_pred HHHHHHHHHh-CCCCCCCEEEEEeCCCcCCHHHHHHHHHCC-CCEEEEEcccCCHHHHHHhC---CCCCHHHHHHHH-HH
Confidence 9999999875 3332 2578888774 22 22 34444443 35688899999999998874 457899999999 56
Q ss_pred HHhhCCe-EEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCC--------CCCcCCCcHHHHHH----HH
Q 022752 175 QKNSQQK-IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGS--------VSQFRTSSDDKVSS----FQ 239 (292)
Q Consensus 175 ~~~~~~~-v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~--------~~~~~~~~~e~l~~----~~ 239 (292)
+++.|.. +.+..++ +|| .+.+++.+.++++.++++. +.+.++.+... ...+..|+.++... +.
T Consensus 160 l~~~G~~~v~~dlI~GlPg--qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~ 237 (400)
T PRK07379 160 IHQAGIENFSLDLISGLPH--QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQ 237 (400)
T ss_pred HHHcCCCeEEEEeecCCCC--CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence 6777765 5555444 354 6788999999999988765 66666654321 12244455555333 44
Q ss_pred HHHHhcCCeE
Q 022752 240 KILRGSYNIR 249 (292)
Q Consensus 240 ~~l~~~~g~~ 249 (292)
+.|. +.|+.
T Consensus 238 ~~L~-~~Gy~ 246 (400)
T PRK07379 238 EILT-QAGYE 246 (400)
T ss_pred HHHH-HcCCc
Confidence 5565 45653
No 122
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.10 E-value=1.6e-08 Score=93.65 Aligned_cols=179 Identities=11% Similarity=0.162 Sum_probs=118.4
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCCCCcC-CC-CHHHHHHHHHHh-h--ccCCcceEEEecCCcccc-CHHHHHHHHHHH
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTMGFKS-NL-SSGEIVEQLVHA-S--RLSNIRNVVFMGMGEPLN-NYAALVEAVRIM 105 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~~~~~-~~-~~eei~~~i~~~-~--~~~~~~~I~fsG~GEPll-~~~~i~ell~~~ 105 (292)
....+++.+ .=|..+|.||.-....... .. -.+..++++... . ....+..|.|-| |-|++ ..+.+.++++.+
T Consensus 5 ~~~~lYiHi-PFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GG-GTPs~L~~~~l~~ll~~i 82 (353)
T PRK05904 5 KTKHLYIHI-PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGG-GTPNCLNDQLLDILLSTI 82 (353)
T ss_pred CeeEEEEEe-CCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECC-CccccCCHHHHHHHHHHH
Confidence 456777776 7799999999764321100 10 122233333321 1 113467888999 99986 567788899888
Q ss_pred hCCCCCCCCCeEEEEcCCchh--h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-
Q 022752 106 TGLPFQVSPKRITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK- 181 (292)
Q Consensus 106 ~~~g~~~~~~~i~l~TNG~~~--~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~- 181 (292)
++. +. ....+++.+|.... + +..+.+.+ ...+.|.+++.+++..+.+. +..+.+++++++ +.+++.|..
T Consensus 83 ~~~-~~-~~~eitiE~nP~~lt~e~l~~lk~~G-~nrisiGvQS~~d~vL~~l~---R~~~~~~~~~ai-~~lr~~G~~~ 155 (353)
T PRK05904 83 KPY-VD-NNCEFTIECNPELITQSQINLLKKNK-VNRISLGVQSMNNNILKQLN---RTHTIQDSKEAI-NLLHKNGIYN 155 (353)
T ss_pred HHh-cC-CCCeEEEEeccCcCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHcC---CCCCHHHHHHHH-HHHHHcCCCc
Confidence 875 21 12578999987432 2 33444443 35678999999999998874 347889999999 556666654
Q ss_pred EEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 182 IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 182 v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
+.+.+++ +|| .+.+++++.++++.++++. +.+.++.+.
T Consensus 156 v~~dlI~GlPg--qt~e~~~~tl~~~~~l~p~~is~y~L~~~ 195 (353)
T PRK05904 156 ISCDFLYCLPI--LKLKDLDEVFNFILKHKINHISFYSLEIK 195 (353)
T ss_pred EEEEEeecCCC--CCHHHHHHHHHHHHhcCCCEEEEEeeEec
Confidence 5555443 354 6788999999999998865 666666544
No 123
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.09 E-value=2.8e-08 Score=94.38 Aligned_cols=182 Identities=13% Similarity=0.147 Sum_probs=116.9
Q ss_pred CCceEEEEEcCCCCCcCCcCcCCCCCCCcCCC---CHHHHHHHHHHhhcc-CCcceEEEecCCccccCHHHHHHHHHHHh
Q 022752 31 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNL---SSGEIVEQLVHASRL-SNIRNVVFMGMGEPLNNYAALVEAVRIMT 106 (292)
Q Consensus 31 ~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~---~~eei~~~i~~~~~~-~~~~~I~fsG~GEPll~~~~i~ell~~~~ 106 (292)
+....|++.+ .=|+.+|.||.-......... -.+.+.+++...... ..+..|.|-| |-|++..+.+.++++.++
T Consensus 50 ~~~~~LYvHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GG-GTPs~l~~~L~~ll~~i~ 127 (433)
T PRK08629 50 GKKYMLYAHV-PFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGG-GTTTILEDELAKTLELAK 127 (433)
T ss_pred CCcEEEEEEe-CCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECC-CccccCHHHHHHHHHHHH
Confidence 4557888876 679999999976533221111 134455555543321 2467888999 999998888999999998
Q ss_pred CCCCCCCCCeEEEEcCCc--hhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEE
Q 022752 107 GLPFQVSPKRITVSTVGI--VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 184 (292)
Q Consensus 107 ~~g~~~~~~~i~l~TNG~--~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i 184 (292)
+. +++ ..+++.+|-- .++..+..... ...+.|.+.+.+++..+.+.+..+..+.+++++.+++ +......+.+
T Consensus 128 ~~-f~i--~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~-~~~~~~~v~~ 202 (433)
T PRK08629 128 KL-FSI--KEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMK-AKGLFPIINV 202 (433)
T ss_pred Hh-CCC--ceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHH-HhccCCeEEE
Confidence 76 333 3677777753 22222333333 3457788899999998887555444455666777743 3222233444
Q ss_pred EEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 185 EYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 185 ~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
..++ +|| ++.+++.+-++++.++++. +.+.|+...
T Consensus 203 DlI~GlPg--qT~e~~~~~l~~~~~l~p~~is~y~L~~~ 239 (433)
T PRK08629 203 DLIFNFPG--QTDEVLQHDLDIAKRLDPRQITTYPLMKS 239 (433)
T ss_pred EEEccCCC--CCHHHHHHHHHHHHhCCCCEEEEccceec
Confidence 4433 354 5788999999999998876 887776643
No 124
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.08 E-value=2.8e-09 Score=98.19 Aligned_cols=153 Identities=18% Similarity=0.275 Sum_probs=100.3
Q ss_pred cCCC--CCCCcCCCCHHHHHHHHHHhhcc--CCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchh
Q 022752 51 CATG--TMGFKSNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH 126 (292)
Q Consensus 51 C~~~--~~~~~~~~~~eei~~~i~~~~~~--~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~ 126 (292)
|+.. ..+..-..+.+++-+.+...+.. .....|.|+| ||||++ ++|.++++.+++.|+ .++.+.|||...
T Consensus 78 CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e~p~~~~aIq~tG-GEPTvr-~DL~eiv~~a~e~g~----~hVqinTnGirl 151 (475)
T COG1964 78 CFAYAEEAGYIYEPTLEQIREMLRNLKKEHPVGANAVQFTG-GEPTLR-DDLIEIIKIAREEGY----DHVQLNTNGIRL 151 (475)
T ss_pred CcCchhhcCcccCCCHHHHHHHHHHHHhcCCCCCceeEecC-CCccch-hhHHHHHHHHhhcCc----cEEEEccCceee
Confidence 6553 22233355666666555554432 2347999999 999997 889999999999984 699999999643
Q ss_pred h-----HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-EEEEEEEeCCCCChHHHHH
Q 022752 127 A-----INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAH 200 (292)
Q Consensus 127 ~-----~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v~i~~vl~~g~nd~~~~l~ 200 (292)
. ..++.+++ ...+.+|.|+.+++.+.... +....++++. ++.|.. +.+--++.+|+||+ ++.
T Consensus 152 A~~~~~~~~l~~ag-~~tvYlsFDG~~e~~~~~~~-----~eIk~alen~----r~~g~~svVLVptl~rgvNd~--~lG 219 (475)
T COG1964 152 AFDPEYVKKLREAG-VNTVYLSFDGVTPKTNWKNH-----WEIKQALENC----RKAGLPSVVLVPTLIRGVNDH--ELG 219 (475)
T ss_pred ccCHHHHHHHHhcC-CcEEEEecCCCCCCchhhHh-----hhhHHHHHHH----HhcCCCcEEEEeehhcccChH--HHH
Confidence 2 34555555 35677899999998866541 2333344444 333433 55445667888875 689
Q ss_pred HHHHHHhhC-C-cE-EEEEecCCC
Q 022752 201 QLGKLLETF-Q-VV-VNLIPFNPI 221 (292)
Q Consensus 201 ~l~~~l~~~-~-~~-v~l~p~~p~ 221 (292)
+++++.... . ++ ++++|+.-.
T Consensus 220 ~iirfa~~n~dvVrgVnfQPVslt 243 (475)
T COG1964 220 AIIRFALNNIDVVRGVNFQPVSLT 243 (475)
T ss_pred HHHHHHHhccccccccceEEEEEe
Confidence 999998753 2 23 666665443
No 125
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.07 E-value=4.5e-08 Score=93.53 Aligned_cols=182 Identities=15% Similarity=0.207 Sum_probs=121.5
Q ss_pred CCCceEEEEEcCCCCCcCCcCcCCCCCCCcCC---CCHHHHHHHHHHhhcc-----CCcceEEEecCCcccc-CHHHHHH
Q 022752 30 GGPRSTLCISSQVGCKMGCNFCATGTMGFKSN---LSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLN-NYAALVE 100 (292)
Q Consensus 30 ~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~---~~~eei~~~i~~~~~~-----~~~~~I~fsG~GEPll-~~~~i~e 100 (292)
++....+||.+ .=|+.+|.||.-........ .-.+.+.+++...... ..+..|.|-| |.|++ ..+.+.+
T Consensus 58 ~~~~~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GG-GTPs~L~~~~l~~ 135 (449)
T PRK09058 58 RARKRLLYIHI-PFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGG-GTPTALSAEDLAR 135 (449)
T ss_pred CCCceEEEEEe-CCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECC-CccccCCHHHHHH
Confidence 34467888877 67999999997543211111 1234455555543321 2467889999 99995 5778899
Q ss_pred HHHHHhCCCCCC-CCCeEEEEcCCc--hhh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHH
Q 022752 101 AVRIMTGLPFQV-SPKRITVSTVGI--VHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176 (292)
Q Consensus 101 ll~~~~~~g~~~-~~~~i~l~TNG~--~~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~ 176 (292)
+++.+++. +++ ....+++.+|-. ..+ +..+.+.+ ...+.|.+.+.+++..+.+. +..+.++++++++ .++
T Consensus 136 ll~~i~~~-~~l~~~~eitiE~~p~~~t~e~l~~l~~aG-vnRiSiGVQSf~d~vLk~lg---R~~~~~~~~~~i~-~l~ 209 (449)
T PRK09058 136 LITALREY-LPLAPDCEITLEGRINGFDDEKADAALDAG-ANRFSIGVQSFNTQVRRRAG---RKDDREEVLARLE-ELV 209 (449)
T ss_pred HHHHHHHh-CCCCCCCEEEEEeCcCcCCHHHHHHHHHcC-CCEEEecCCcCCHHHHHHhC---CCCCHHHHHHHHH-HHH
Confidence 99998875 222 125788888742 222 33444443 45677888999999998874 3467889999994 455
Q ss_pred hhC-CeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 177 NSQ-QKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 177 ~~~-~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
+.+ ..+.+..++ +|| ++.+++.+-++++.++++. +.+.++.+.
T Consensus 210 ~~g~~~v~~DlI~GlPg--qT~e~~~~~l~~~~~l~~~~is~y~L~~~ 255 (449)
T PRK09058 210 ARDRAAVVCDLIFGLPG--QTPEIWQQDLAIVRDLGLDGVDLYALNLL 255 (449)
T ss_pred hCCCCcEEEEEEeeCCC--CCHHHHHHHHHHHHhcCCCEEEEeccccC
Confidence 666 556666554 454 5778888888998888875 777776654
No 126
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.07 E-value=6.9e-08 Score=90.59 Aligned_cols=177 Identities=12% Similarity=0.155 Sum_probs=113.4
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHH----HHHHHHhhc---cCCcceEEEecCCccc-cCHHHHHHHHHH
Q 022752 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI----VEQLVHASR---LSNIRNVVFMGMGEPL-NNYAALVEAVRI 104 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei----~~~i~~~~~---~~~~~~I~fsG~GEPl-l~~~~i~ell~~ 104 (292)
...||+.+ .-|..+|.||.-....... ...+.. .+++..... ...++.|.|.| |.|+ +..+.+.++++.
T Consensus 11 ~~~lYiHi-PFC~~~C~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GG-GTPs~l~~~~l~~ll~~ 87 (390)
T PRK06582 11 DLSIYIHW-PFCLSKCPYCDFNSHVAST-IDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGG-GTPSLMNPVIVEGIINK 87 (390)
T ss_pred CeEEEEEe-CCCcCcCCCCCCeeccCCC-CCHHHHHHHHHHHHHHHHHHccCCceeEEEECC-CccccCCHHHHHHHHHH
Confidence 36777776 8999999999763321111 112222 333332221 12478999999 9995 567778888999
Q ss_pred HhCCCCCCC-CCeEEEEcCCchh--h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCC
Q 022752 105 MTGLPFQVS-PKRITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180 (292)
Q Consensus 105 ~~~~g~~~~-~~~i~l~TNG~~~--~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~ 180 (292)
+++. +.++ ...+++.+|.... + +..+.+.+ ...+.|.+.+.+++..+.+. +..+.++++++++ .+++...
T Consensus 88 i~~~-~~~~~~~eitiE~nP~~~~~e~l~~l~~~G-vnRiSiGvQS~~d~~L~~lg---R~h~~~~~~~ai~-~~~~~~~ 161 (390)
T PRK06582 88 ISNL-AIIDNQTEITLETNPTSFETEKFKAFKLAG-INRVSIGVQSLKEDDLKKLG---RTHDCMQAIKTIE-AANTIFP 161 (390)
T ss_pred HHHh-CCCCCCCEEEEEeCCCcCCHHHHHHHHHCC-CCEEEEECCcCCHHHHHHcC---CCCCHHHHHHHHH-HHHHhCC
Confidence 9875 2222 2579999998432 2 33444443 45688999999999888774 4467899999994 4555555
Q ss_pred eEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCC
Q 022752 181 KIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNP 220 (292)
Q Consensus 181 ~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p 220 (292)
.+.+..+. +|| .+.+++.+-++.+.++++. +.+.++..
T Consensus 162 ~v~~DlI~GlPg--qt~e~~~~~l~~~~~l~p~his~y~L~i 201 (390)
T PRK06582 162 RVSFDLIYARSG--QTLKDWQEELKQAMQLATSHISLYQLTI 201 (390)
T ss_pred cEEEEeecCCCC--CCHHHHHHHHHHHHhcCCCEEEEecCEE
Confidence 56655544 454 4566777777777777665 66666543
No 127
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.07 E-value=1.1e-08 Score=97.79 Aligned_cols=177 Identities=15% Similarity=0.310 Sum_probs=114.0
Q ss_pred EEEEEcCCCCCcCCcCcCCCCCC-CcCCCCHHHHHHHHHHhhccCCcceEEEecC-----------Ccccc-CHHHHHHH
Q 022752 35 TLCISSQVGCKMGCNFCATGTMG-FKSNLSSGEIVEQLVHASRLSNIRNVVFMGM-----------GEPLN-NYAALVEA 101 (292)
Q Consensus 35 ~l~is~t~gCNl~C~yC~~~~~~-~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~-----------GEPll-~~~~i~el 101 (292)
..++.++.|||++|.||..+... ..+..+++++++++..... .++..|.|+|. +.|.. +...+.++
T Consensus 149 ~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~-~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~L 227 (448)
T PRK14333 149 TAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAA-QGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDL 227 (448)
T ss_pred eEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHH-CCCcEEEEEecccchhcCCCCCccccccccccHHHH
Confidence 45677789999999999876432 3356788999999987654 36788888751 22222 12357788
Q ss_pred HHHHhCC-CCCCCCCeEEEEc-CC--chhhHHHHhhhCC--CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHH
Q 022752 102 VRIMTGL-PFQVSPKRITVST-VG--IVHAINKFHSDLP--GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175 (292)
Q Consensus 102 l~~~~~~-g~~~~~~~i~l~T-NG--~~~~~~~l~~~~~--~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~ 175 (292)
++.+.+. + + ..+.+.+ +- ..+++.+++...+ -..+.|.+.+.+++..+.+. ++.+.++..+.++. +
T Consensus 228 l~~i~~~~~--~--~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~---R~~t~e~~~~~i~~-l 299 (448)
T PRK14333 228 LYYIHDVEG--I--ERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMA---RGYTHEKYRRIIDK-I 299 (448)
T ss_pred HHHHHhcCC--C--eEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcC---CCCCHHHHHHHHHH-H
Confidence 8888775 3 1 2355532 21 1122222222221 13455788999999988763 45688888888854 4
Q ss_pred Hhh--CCeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 176 KNS--QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 176 ~~~--~~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
++. +..+...+++ +|| ++++++++.++++.++++. +++.+|.|.+
T Consensus 300 r~~~p~i~i~~d~IvGfPg--ET~edf~~tl~~l~~~~~~~~~~~~~sp~p 348 (448)
T PRK14333 300 REYMPDASISADAIVGFPG--ETEAQFENTLKLVEEIGFDQLNTAAYSPRP 348 (448)
T ss_pred HHhCCCcEEEeeEEEECCC--CCHHHHHHHHHHHHHcCCCEEeeeeeecCC
Confidence 555 3334444333 354 6889999999999999875 7777777753
No 128
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.06 E-value=1.5e-08 Score=94.41 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=110.0
Q ss_pred EEcCCCCCcCCcCcCCCCCC---CcCCCCHHHHHHHHHHhhccCCcceEEEecCC-ccccC-HHHHHHHHHHHhCCCCCC
Q 022752 38 ISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPLNN-YAALVEAVRIMTGLPFQV 112 (292)
Q Consensus 38 is~t~gCNl~C~yC~~~~~~---~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~G-EPll~-~~~i~ell~~~~~~g~~~ 112 (292)
+..|..|+.+|.||...... ....++.+++++.+.++.. .++..+.++| | .|... .+.+.++++.+|+.-
T Consensus 64 i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~-~G~~~i~l~~-G~~p~~~~~e~~~~~i~~ik~~~--- 138 (371)
T PRK07360 64 INFTNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVK-RGATEVCIQG-GLHPAADSLEFYLEILEAIKEEF--- 138 (371)
T ss_pred cccchhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHh-CCCCEEEEcc-CCCCCCCcHHHHHHHHHHHHHhC---
Confidence 44479999999999774321 1234899999999888765 4789999999 8 67776 778999999999751
Q ss_pred CCCeEEEE----------cCCchhh--HHHHhhhCCCceEE-EEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhC
Q 022752 113 SPKRITVS----------TVGIVHA--INKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 179 (292)
Q Consensus 113 ~~~~i~l~----------TNG~~~~--~~~l~~~~~~~~l~-iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~ 179 (292)
+...+... +.|.... +++|.+++. ..+. .+-...+++.++.+.+. +.+.++.++.+ +.+++.|
T Consensus 139 ~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGl-d~~~~t~~e~l~~~vr~~i~p~--~~s~~~~l~~i-~~a~~~G 214 (371)
T PRK07360 139 PDIHLHAFSPMEVYFAAREDGLSYEEVLKALKDAGL-DSMPGTAAEILVDEVRRIICPE--KIKTAEWIEIV-KTAHKLG 214 (371)
T ss_pred CCcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCC-CcCCCcchhhccHHHHHhhCCC--CCCHHHHHHHH-HHHHHcC
Confidence 11344432 3565432 567777652 2221 22233456666666543 34677778888 6678888
Q ss_pred CeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE
Q 022752 180 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 212 (292)
Q Consensus 180 ~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~ 212 (292)
.++..-.+ =|...+.++..+.+.++++++..
T Consensus 215 l~~~sg~i--~G~gEt~edrv~~l~~lr~l~~~ 245 (371)
T PRK07360 215 LPTTSTMM--YGHVETPEHRIDHLLILREIQQE 245 (371)
T ss_pred CCceeeEE--eeCCCCHHHHHHHHHHHHHhchh
Confidence 87754433 35567888888888889887653
No 129
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.05 E-value=7.5e-08 Score=90.12 Aligned_cols=203 Identities=11% Similarity=0.141 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCCCcCCCC----HHHHHHHHHHhhc---cCCcceEEEecCCccccC-HHHHHHHHHHH
Q 022752 34 STLCISSQVGCKMGCNFCATGTMGFKSNLS----SGEIVEQLVHASR---LSNIRNVVFMGMGEPLNN-YAALVEAVRIM 105 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~~~~~~~----~eei~~~i~~~~~---~~~~~~I~fsG~GEPll~-~~~i~ell~~~ 105 (292)
..||+.+ .=|..+|.||.-....... .. .+.+.+++..... ...+..|.|.| |.|++- .+.+.++++.+
T Consensus 5 ~~lYiHI-PFC~~kC~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GG-GTPs~l~~~~L~~ll~~i 81 (380)
T PRK09057 5 FGLYVHW-PFCLAKCPYCDFNSHVRHA-IDQARFAAAFLRELATEAARTGPRTLTSIFFGG-GTPSLMQPETVAALLDAI 81 (380)
T ss_pred eEEEEEe-CCcCCcCCCCCCcccCcCc-CCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCC-CccccCCHHHHHHHHHHH
Confidence 4677765 7899999999764322111 22 2344445443222 12578999999 999974 66888999999
Q ss_pred hCCCCCCC-CCeEEEEcCCch--hh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe
Q 022752 106 TGLPFQVS-PKRITVSTVGIV--HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181 (292)
Q Consensus 106 ~~~g~~~~-~~~i~l~TNG~~--~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~ 181 (292)
++. +.+. ...+++.+|-.. .+ +..+.+.+ ...+.+.+.+.+++..+.+. +..+.+++.++++ .+++.+..
T Consensus 82 ~~~-f~~~~~~eit~E~~P~~i~~e~L~~l~~~G-vnrislGvQS~~d~vL~~l~---R~~~~~~~~~ai~-~~~~~~~~ 155 (380)
T PRK09057 82 ARL-WPVADDIEITLEANPTSVEAGRFRGYRAAG-VNRVSLGVQALNDADLRFLG---RLHSVAEALAAID-LAREIFPR 155 (380)
T ss_pred HHh-CCCCCCccEEEEECcCcCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHcC---CCCCHHHHHHHHH-HHHHhCcc
Confidence 875 2221 246888888632 12 44444443 35678889999999988874 4578899999994 45555555
Q ss_pred EEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCC--------CCCcCCCcHHH----HHHHHHHHHhcCC
Q 022752 182 IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGS--------VSQFRTSSDDK----VSSFQKILRGSYN 247 (292)
Q Consensus 182 v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~--------~~~~~~~~~e~----l~~~~~~l~~~~g 247 (292)
+.+.++. +|| .+.+++.+-++.+..+++. +.+.++.+... ...+..|+.++ +..+.+.|+ ..|
T Consensus 156 v~~dli~GlPg--qt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~-~~G 232 (380)
T PRK09057 156 VSFDLIYARPG--QTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITA-AAG 232 (380)
T ss_pred EEEEeecCCCC--CCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHH-HcC
Confidence 5555443 344 5666777766666677765 77666654321 12344566553 334455565 455
Q ss_pred e
Q 022752 248 I 248 (292)
Q Consensus 248 ~ 248 (292)
+
T Consensus 233 ~ 233 (380)
T PRK09057 233 L 233 (380)
T ss_pred C
Confidence 5
No 130
>PRK08445 hypothetical protein; Provisional
Probab=99.04 E-value=3e-08 Score=91.54 Aligned_cols=195 Identities=14% Similarity=0.156 Sum_probs=125.4
Q ss_pred EEcCCCCCcCCcCcCCCCC---CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCcc-ccCHHHHHHHHHHHhCCCCCCC
Q 022752 38 ISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEP-LNNYAALVEAVRIMTGLPFQVS 113 (292)
Q Consensus 38 is~t~gCNl~C~yC~~~~~---~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEP-ll~~~~i~ell~~~~~~g~~~~ 113 (292)
++.|.+|+.+|.||..+.. .....++++++.+.+.++... +...|.++| |++ .+..+.+.++++.+++.. +
T Consensus 46 in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~~-g~~~i~~~g-g~~~~~~~e~~~~l~~~Ik~~~---p 120 (348)
T PRK08445 46 INYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLAI-GGTQILFQG-GVHPKLKIEWYENLVSHIAQKY---P 120 (348)
T ss_pred cccccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHHc-CCCEEEEec-CCCCCCCHHHHHHHHHHHHHHC---C
Confidence 5568999999999977642 222356899999999987663 678999998 754 456788999999999873 1
Q ss_pred CCeEEEEcC----------Cch-h-hHHHHhhhCCCceEE-EEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCC
Q 022752 114 PKRITVSTV----------GIV-H-AINKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180 (292)
Q Consensus 114 ~~~i~l~TN----------G~~-~-~~~~l~~~~~~~~l~-iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~ 180 (292)
..++.-.|. |.. . .+.+|.+++. ..+. +.+++.+++.++.+.+. +.+.++-++.+ +.+++.|.
T Consensus 121 ~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl-~~~~g~glE~~~d~v~~~~~pk--~~t~~~~i~~i-~~a~~~Gi 196 (348)
T PRK08445 121 TITIHGFSAVEIDYIAKISKISIKEVLERLQAKGL-SSIPGAGAEILSDRVRDIIAPK--KLDSDRWLEVH-RQAHLIGM 196 (348)
T ss_pred CcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCC-CCCCCCceeeCCHHHHHhhCCC--CCCHHHHHHHH-HHHHHcCC
Confidence 233322222 111 2 2556666653 3343 56788889998887643 45666778888 56778888
Q ss_pred eEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE------EEEEecCCCC-CCC----CcCCCcHHHHHHHHHHHH
Q 022752 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV------VNLIPFNPIG-SVS----QFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 181 ~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~------v~l~p~~p~~-~~~----~~~~~~~e~l~~~~~~l~ 243 (292)
++...+++ |..++.++..+.+.++++++.. +-+..|.|.+ +.. ....++.++..+.....+
T Consensus 197 ~~~sg~i~--G~~Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~R 268 (348)
T PRK08445 197 KSTATMMF--GTVENDEEIIEHWERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSR 268 (348)
T ss_pred eeeeEEEe--cCCCCHHHHHHHHHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHH
Confidence 77665544 5556778888888888887542 2222344432 111 123466666666554443
No 131
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.01 E-value=1.4e-07 Score=88.04 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=113.8
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCCCcCCCCH----HHHHHH-HHHhhc---cCCcceEEEecCCccccC-HHHHHHHHHH
Q 022752 34 STLCISSQVGCKMGCNFCATGTMGFKSNLSS----GEIVEQ-LVHASR---LSNIRNVVFMGMGEPLNN-YAALVEAVRI 104 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~----eei~~~-i~~~~~---~~~~~~I~fsG~GEPll~-~~~i~ell~~ 104 (292)
..||+.+ .=|..+|.||.-...... .... +.++++ +..... ...++.|.|.| |.|++- ++.+.++++.
T Consensus 7 ~~lYiHI-PFC~~~C~yC~f~~~~~~-~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GG-GTPs~l~~~~l~~ll~~ 83 (370)
T PRK06294 7 LALYIHI-PFCTKKCHYCSFYTIPYK-EESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGG-GTPSLVPPALIQDILKT 83 (370)
T ss_pred eEEEEEe-CCccCcCCCCcCcccCCC-ccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECC-CccccCCHHHHHHHHHH
Confidence 5677766 789999999965332111 1112 222333 221111 12467888999 999975 5678899998
Q ss_pred HhCCCCCCCCCeEEEEcCCchh--h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe
Q 022752 105 MTGLPFQVSPKRITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181 (292)
Q Consensus 105 ~~~~g~~~~~~~i~l~TNG~~~--~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~ 181 (292)
+++.. ...+++.+|.-.. + +..+.+.+ ...+.|.+.+.+++..+.+. +..+.+++++++ +.+++.|..
T Consensus 84 i~~~~----~~eit~E~~P~~~~~~~l~~l~~~G-~nrislGvQS~~~~~L~~l~---R~~~~~~~~~ai-~~~~~~g~~ 154 (370)
T PRK06294 84 LEAPH----ATEITLEANPENLSESYIRALALTG-INRISIGVQTFDDPLLKLLG---RTHSSSKAIDAV-QECSEHGFS 154 (370)
T ss_pred HHhCC----CCeEEEEeCCCCCCHHHHHHHHHCC-CCEEEEccccCCHHHHHHcC---CCCCHHHHHHHH-HHHHHcCCC
Confidence 87652 2678899886432 2 33444443 45688899999999988874 446788999999 456666653
Q ss_pred -EEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 182 -IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 182 -v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
+.+..+. +|| ++.+++.+.++++.++++. +.+.++.+.
T Consensus 155 ~v~~Dli~GlPg--qt~~~~~~~l~~~~~l~~~~is~y~l~~~ 195 (370)
T PRK06294 155 NLSIDLIYGLPT--QSLSDFIVDLHQAITLPITHISLYNLTID 195 (370)
T ss_pred eEEEEeecCCCC--CCHHHHHHHHHHHHccCCCeEEEeeeEec
Confidence 5555433 243 5778898889999888865 666665543
No 132
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=98.98 E-value=2.1e-07 Score=87.56 Aligned_cols=178 Identities=13% Similarity=0.133 Sum_probs=114.7
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCCCcC--CCCH----HHHHHHHHHhhc---cCCcceEEEecCCcccc-CHHHHHHHHH
Q 022752 34 STLCISSQVGCKMGCNFCATGTMGFKS--NLSS----GEIVEQLVHASR---LSNIRNVVFMGMGEPLN-NYAALVEAVR 103 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~~~~--~~~~----eei~~~i~~~~~---~~~~~~I~fsG~GEPll-~~~~i~ell~ 103 (292)
..||+.+ .-|..+|.||.-....... .... +.+.+++..... ...+..|.|-| |.|++ ..+.|.++++
T Consensus 20 ~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GG-GTPs~L~~~~L~~ll~ 97 (394)
T PRK08898 20 LSLYVHF-PWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGG-GTPSLLSAAGLDRLLS 97 (394)
T ss_pred eEEEEEe-CCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECC-CCcCCCCHHHHHHHHH
Confidence 4677766 7899999999753221111 1122 333444443221 12477899999 99997 4678999999
Q ss_pred HHhCCCCCC-CCCeEEEEcCCc-h-hh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhC
Q 022752 104 IMTGLPFQV-SPKRITVSTVGI-V-HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 179 (292)
Q Consensus 104 ~~~~~g~~~-~~~~i~l~TNG~-~-~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~ 179 (292)
.+++. +++ ....+++.+|-. . .+ +..+.+.+ ...+.|.+.+.+++..+.+.+ ..+.+++.++++ .+++..
T Consensus 98 ~i~~~-~~~~~~~eit~E~~p~~~~~e~L~~l~~~G-vnrisiGvQS~~~~~L~~l~R---~~~~~~~~~~i~-~~~~~~ 171 (394)
T PRK08898 98 DVRAL-LPLDPDAEITLEANPGTFEAEKFAQFRASG-VNRLSIGIQSFNDAHLKALGR---IHDGAEARAAIE-IAAKHF 171 (394)
T ss_pred HHHHh-CCCCCCCeEEEEECCCCCCHHHHHHHHHcC-CCeEEEecccCCHHHHHHhCC---CCCHHHHHHHHH-HHHHhC
Confidence 99875 322 125788888852 2 22 44555544 356888999999999988743 356778888884 444445
Q ss_pred CeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 180 QKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 180 ~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
..+.+..++ +| +++.+++.+-++.+.++++. +.+.++.+.
T Consensus 172 ~~v~~dlI~GlP--gqt~~~~~~~l~~~~~l~p~~is~y~l~~~ 213 (394)
T PRK08898 172 DNFNLDLMYALP--GQTLDEALADVETALAFGPPHLSLYHLTLE 213 (394)
T ss_pred CceEEEEEcCCC--CCCHHHHHHHHHHHHhcCCCEEEEeeeEEC
Confidence 555555443 34 46778888888888888764 776666554
No 133
>PRK00955 hypothetical protein; Provisional
Probab=98.98 E-value=4.2e-08 Score=95.69 Aligned_cols=182 Identities=18% Similarity=0.256 Sum_probs=111.1
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCCC-Cc-CCCCHHHHHHHHHHhhccCCcceE-EEecCCcccc---------------
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTMG-FK-SNLSSGEIVEQLVHASRLSNIRNV-VFMGMGEPLN--------------- 93 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~~-~~-~~~~~eei~~~i~~~~~~~~~~~I-~fsG~GEPll--------------- 93 (292)
.-....|.++.||+.+|.||..+... .. +..+.+++++++.......+..++ +-.| | |+.
T Consensus 290 ~~i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~Dlg-G-ptan~Yg~~c~~~~~~~~ 367 (620)
T PRK00955 290 EEVKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVG-G-PTANFRKMACKKQLKCGA 367 (620)
T ss_pred eeEEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCC-C-CCcccccccccccccccc
Confidence 33444445579999999999776442 22 578899999999886543344443 2122 2 111
Q ss_pred -----------------CHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCc----h--h----hHHHHhhhCCCceEEEEec
Q 022752 94 -----------------NYAALVEAVRIMTGL-PFQVSPKRITVSTVGI----V--H----AINKFHSDLPGLNLAVSLH 145 (292)
Q Consensus 94 -----------------~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~----~--~----~~~~l~~~~~~~~l~iSld 145 (292)
+...+.+|++.+++. | + .++.+.+ |+ + + .+.++.+....-.+-|.++
T Consensus 368 c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~g--v--krv~isS-GIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapE 442 (620)
T PRK00955 368 CKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPG--V--KKVFIRS-GIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPE 442 (620)
T ss_pred ccccccccCccccccCcChHHHHHHHHHHhccCC--c--eEEEeec-ceeccccccCCcHHHHHHHHHHhcCCCceeCcC
Confidence 224688999999886 4 1 2444433 31 1 1 1344544321124668889
Q ss_pred CCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEE-EEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY-IMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 146 ~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~-vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
+.+++..+.+.++ ....+++.++.++++.++.|....+.. .++.--.+++++++++++|++++++. +++.+|.|.
T Consensus 443 SgSd~VLk~M~K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~ 519 (620)
T PRK00955 443 HISDRVLKLMGKP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPT 519 (620)
T ss_pred CCChHHHHHhCCC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecC
Confidence 9999988876543 223456666667677777666533332 23222346889999999999999875 666666665
No 134
>PRK08444 hypothetical protein; Provisional
Probab=98.96 E-value=1.3e-07 Score=87.30 Aligned_cols=196 Identities=15% Similarity=0.148 Sum_probs=122.7
Q ss_pred EEcCCCCCcCCcCcCCCCC---CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCC
Q 022752 38 ISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSP 114 (292)
Q Consensus 38 is~t~gCNl~C~yC~~~~~---~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~ 114 (292)
++.|+.|..+|.||..... .....++++++++.+.+... .++..+.+.|-+-|....+.+.++++.+|+.- +.
T Consensus 53 In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~-~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~---p~ 128 (353)
T PRK08444 53 INPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVK-RGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAY---PN 128 (353)
T ss_pred cccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHH-CCCCEEEEeccCCCCCCHHHHHHHHHHHHHHC---CC
Confidence 6778999999999966421 11235899999999998765 47888888873466666788999999999861 12
Q ss_pred CeEEEE----------cCCchh-h-HHHHhhhCCCceEEE-EecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe
Q 022752 115 KRITVS----------TVGIVH-A-INKFHSDLPGLNLAV-SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181 (292)
Q Consensus 115 ~~i~l~----------TNG~~~-~-~~~l~~~~~~~~l~i-Sld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~ 181 (292)
.++..- +.|... + +.+|.+++. ..+-- +..-.++++|..+.+. +.+.++.++-+ +.+++.|.+
T Consensus 129 i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl-~~~~g~~aEi~~~~vr~~I~p~--k~~~~~~~~i~-~~a~~~Gi~ 204 (353)
T PRK08444 129 LHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGV-DSMPGGGAEIFDEEVRKKICKG--KVSSERWLEIH-KYWHKKGKM 204 (353)
T ss_pred ceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCc-ccCCCCCchhcCHHHHhhhCCC--CCCHHHHHHHH-HHHHHcCCC
Confidence 455542 223222 2 456666552 11211 2233467788888754 34556666666 556777876
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHHHhhCCcE------EEEEecCCCC-CCCCcCCCcHHHHHHHHHHHH
Q 022752 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVV------VNLIPFNPIG-SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 182 v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~------v~l~p~~p~~-~~~~~~~~~~e~l~~~~~~l~ 243 (292)
+.-. ++=|..++.++..+.+..|++++.. +-.++|.|.+ +....+.++.++..+.....+
T Consensus 205 ~~sg--~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~R 271 (353)
T PRK08444 205 SNAT--MLFGHIENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISR 271 (353)
T ss_pred ccce--eEEecCCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHH
Confidence 6543 3335557777787877888877543 2233455532 333455677777776655544
No 135
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=98.91 E-value=2e-07 Score=84.50 Aligned_cols=194 Identities=15% Similarity=0.211 Sum_probs=129.4
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCC-CC----CcCCCCHHHHHHHHHHhhccCCcceEEEecCCc--cccCHHHHHHHHHHH
Q 022752 33 RSTLCISSQVGCKMGCNFCATGT-MG----FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE--PLNNYAALVEAVRIM 105 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~-~~----~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE--Pll~~~~i~ell~~~ 105 (292)
+..+.+.+ .+|+-+|.||.... .. ....++.+++++.+..++..........++ |+ + =..+.+.++++.+
T Consensus 51 ~~ii~ikt-g~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aa-gr~~~-~~~~~i~~~v~~V 127 (335)
T COG0502 51 STLISIKT-GCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAA-GRGPG-RDMEEVVEAIKAV 127 (335)
T ss_pred EEEEEeec-CCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEe-ccCCC-ccHHHHHHHHHHH
Confidence 44555543 45799999997742 21 234588899999998877642256777777 65 3 2357899999999
Q ss_pred hC-CCCCCCCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeE
Q 022752 106 TG-LPFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 182 (292)
Q Consensus 106 ~~-~g~~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v 182 (292)
++ .| ..+++ |-|.+.. .++|.+++ .....--+++ +++.|.++.+. .++++.++.+ +.+++.|..+
T Consensus 128 k~~~~-----le~c~-slG~l~~eq~~~L~~aG-vd~ynhNLeT-s~~~y~~I~tt---~t~edR~~tl-~~vk~~Gi~v 195 (335)
T COG0502 128 KEELG-----LEVCA-SLGMLTEEQAEKLADAG-VDRYNHNLET-SPEFYENIITT---RTYEDRLNTL-ENVREAGIEV 195 (335)
T ss_pred HHhcC-----cHHhh-ccCCCCHHHHHHHHHcC-hhheeccccc-CHHHHcccCCC---CCHHHHHHHH-HHHHHcCCcc
Confidence 94 46 45554 4576543 56777765 2334556777 88999998654 6899999999 6788888766
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHhhCC-cE-EEEEecCCCC--CCCCcCCCcHHHHHHHHHHHH
Q 022752 183 FIEYIMLDGVNDEEQHAHQLGKLLETFQ-VV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 183 ~i~~vl~~g~nd~~~~l~~l~~~l~~~~-~~-v~l~p~~p~~--~~~~~~~~~~e~l~~~~~~l~ 243 (292)
-.-. +-|...+.++-.+++..|+++. +. |-+..++|.. +..+.+..+.-+..+..+.++
T Consensus 196 csGg--I~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~R 258 (335)
T COG0502 196 CSGG--IVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVAR 258 (335)
T ss_pred ccce--EecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHH
Confidence 5433 3367778888788888888887 54 6666677763 333344555555554444443
No 136
>PTZ00413 lipoate synthase; Provisional
Probab=98.89 E-value=1.2e-06 Score=80.29 Aligned_cols=205 Identities=13% Similarity=0.184 Sum_probs=131.8
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhccCCcceEEEecCC--ccccC--HHHHHHHHHHHhCC
Q 022752 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG--EPLNN--YAALVEAVRIMTGL 108 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~G--EPll~--~~~i~ell~~~~~~ 108 (292)
..++.| ....|.-+|.||..........++++|+.+.+..+.. .++..++++. | +.+-. .+.+.+.++.+++.
T Consensus 149 tATfmi-lG~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~-~Gl~~~VVTS-v~RDDL~D~ga~~~a~~I~~Ir~~ 225 (398)
T PTZ00413 149 TATIMV-MGDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAE-MGVDYIVMTM-VDRDDLPDGGASHVARCVELIKES 225 (398)
T ss_pred eeEeee-cCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-cCCCEEEEEE-EcCCCCChhhHHHHHHHHHHHHcc
Confidence 455555 4678999999998864332456789998888877655 3666767666 5 33443 45788999999985
Q ss_pred CCCCCCCeEEEEc---CCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh-CCeEEE
Q 022752 109 PFQVSPKRITVST---VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFI 184 (292)
Q Consensus 109 g~~~~~~~i~l~T---NG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~-~~~v~i 184 (292)
. +...+.+.+ -|....+..+.++++ ..+.--|+. .+..|..++.+ ..++++.++.++. +++. ...+..
T Consensus 226 ~---p~~~IevligDf~g~~e~l~~L~eAG~-dvynHNLET-v~rLyp~VRt~--~atYe~sLe~Lr~-AKe~f~~gi~t 297 (398)
T PTZ00413 226 N---PELLLEALVGDFHGDLKSVEKLANSPL-SVYAHNIEC-VERITPYVRDR--RASYRQSLKVLEH-VKEFTNGAMLT 297 (398)
T ss_pred C---CCCeEEEcCCccccCHHHHHHHHhcCC-CEEeccccc-CHhHHHHHccC--cCCHHHHHHHHHH-HHHHhcCCceE
Confidence 2 124565554 222233566676653 233344554 46777777421 3589999999955 4443 333444
Q ss_pred EEEEeCCCCChHHHHHHHHHHHhhCCcEEEEE-ec-CCCCCCCCc-CCCcHHHHHHHHHHHHhcCCeE
Q 022752 185 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI-PF-NPIGSVSQF-RTSSDDKVSSFQKILRGSYNIR 249 (292)
Q Consensus 185 ~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~-p~-~p~~~~~~~-~~~~~e~l~~~~~~l~~~~g~~ 249 (292)
-.-+|=|..++.+++.++++.|.++|+.+-.+ +| .|...+..+ .-..+++.+.++++.. +.|+.
T Consensus 298 cSGiIVGLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~-~~Gf~ 364 (398)
T PTZ00413 298 KSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAM-KMGFL 364 (398)
T ss_pred eeeeEecCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHH-HcCCc
Confidence 44455567889999999999999999884433 44 454321111 2357788888888888 67874
No 137
>PRK05927 hypothetical protein; Provisional
Probab=98.88 E-value=1e-07 Score=87.98 Aligned_cols=195 Identities=16% Similarity=0.138 Sum_probs=118.9
Q ss_pred EEcCCCCCcCCcCcCCCCCC---CcCCCCHHHHHHHHHHhhccCCcceEEEecCCc-cccCHHHHHHHHHHHhCCCCCCC
Q 022752 38 ISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNNYAALVEAVRIMTGLPFQVS 113 (292)
Q Consensus 38 is~t~gCNl~C~yC~~~~~~---~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE-Pll~~~~i~ell~~~~~~g~~~~ 113 (292)
+..|+.|+.+|.||...... ....++++++++.+.+... .++..+.|+| |+ |-...+.+.++++.+|+.- +
T Consensus 49 i~~Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~-~G~~~i~i~g-G~~p~~~~e~~~~~i~~ik~~~---p 123 (350)
T PRK05927 49 PNYTNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVS-AGVKTVLLQG-GVHPQLGIDYLEELVRITVKEF---P 123 (350)
T ss_pred CccchhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHH-CCCCEEEEeC-CCCCCCCHHHHHHHHHHHHHHC---C
Confidence 34468999999999775321 1136899999999998766 3788999999 98 4455778999999999751 1
Q ss_pred CCeE----------EEEcCCchhh--HHHHhhhCCCceEE-EEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCC
Q 022752 114 PKRI----------TVSTVGIVHA--INKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180 (292)
Q Consensus 114 ~~~i----------~l~TNG~~~~--~~~l~~~~~~~~l~-iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~ 180 (292)
.+++ .-.+.|.... +.+|.+++. ..+. --++..++..++.+.+. +.+.++=++.+ +.+++.|.
T Consensus 124 ~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl-~~l~g~~~Et~~~~~~~~~~p~--k~~~~~rl~~i-~~A~~lGi 199 (350)
T PRK05927 124 SLHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQ-RTIPGGGAEILSERVRKIISPK--KMGPDGWIQFH-KLAHRLGF 199 (350)
T ss_pred CCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCc-ccCCCCCchhCCHHHhhccCCC--CCCHHHHHHHH-HHHHHcCC
Confidence 1221 0123465432 456666552 1111 13444566677766542 34567777888 56777777
Q ss_pred eEEEEEEEeCCCCChHHHHHHHHHHHhhCCc----EEEEEecCCCCCCCC----c-CCCcHHHHHHHHHHHH
Q 022752 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQV----VVNLIPFNPIGSVSQ----F-RTSSDDKVSSFQKILR 243 (292)
Q Consensus 181 ~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~----~v~l~p~~p~~~~~~----~-~~~~~e~l~~~~~~l~ 243 (292)
++.--.+ =|..++.++..+.+..|++++- ...++|+.+.+..+. . .+++.++..+.....+
T Consensus 200 ~~~sg~l--~G~gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~R 269 (350)
T PRK05927 200 RSTATMM--FGHVESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVAR 269 (350)
T ss_pred CcCceeE--EeeCCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHH
Confidence 6654433 3556677777777777777642 234456533321221 1 1467777776655544
No 138
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.88 E-value=5.6e-07 Score=85.88 Aligned_cols=209 Identities=14% Similarity=0.181 Sum_probs=129.5
Q ss_pred EcCCCCCcCCcCcCCCC-CC-C-cCCCCHHHHHHHHHHhhccCCcceEEEecCCc--cccCHHHHHHHHHHHhCCCCCCC
Q 022752 39 SSQVGCKMGCNFCATGT-MG-F-KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE--PLNNYAALVEAVRIMTGLPFQVS 113 (292)
Q Consensus 39 s~t~gCNl~C~yC~~~~-~~-~-~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE--Pll~~~~i~ell~~~~~~g~~~~ 113 (292)
..++.|..+|.||.... .. . ...++.+|+.+++..+.. .++..+.+.+ || |-...+.+.++++.+++......
T Consensus 89 yiSN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~-~G~~~i~Lvs-Ge~p~~~~~eyi~e~i~~I~~~~~~~g 166 (469)
T PRK09613 89 YISNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALED-MGHKRLALVA-GEDPPNCDIEYILESIKTIYSTKHGNG 166 (469)
T ss_pred cccCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHH-CCCCEEEEEe-CCCCCCCCHHHHHHHHHHHHHhccccC
Confidence 35789999999996532 11 1 245899999999988765 4788888766 65 33447888999999986310000
Q ss_pred C-CeEEEEcCCch--hhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-EEEEEEEe
Q 022752 114 P-KRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIML 189 (292)
Q Consensus 114 ~-~~i~l~TNG~~--~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v~i~~vl~ 189 (292)
. ..++++- |.+ .+.++|.+++ ...+.+-..+.+.+.|..+.+...+.+++.-++++ +.+.+.|.. |..=.+
T Consensus 167 ~i~~v~ini-g~lt~eey~~LkeaG-v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~-~rA~~aGi~~Vg~G~L-- 241 (469)
T PRK09613 167 EIRRVNVNI-APTTVENYKKLKEAG-IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAM-DRAMEAGIDDVGIGVL-- 241 (469)
T ss_pred cceeeEEEe-ecCCHHHHHHHHHcC-CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHH-HHHHHcCCCeeCeEEE--
Confidence 0 1334431 222 2356777665 24566677888899999887655667899999999 556777875 555443
Q ss_pred CCCCChHHHHHHHHHHHhhC----C--cE-EEEEecCCCC--CCCCcC-CCcHHHHHHHHHHHH---hcCCeEEEeec
Q 022752 190 DGVNDEEQHAHQLGKLLETF----Q--VV-VNLIPFNPIG--SVSQFR-TSSDDKVSSFQKILR---GSYNIRTTVRK 254 (292)
Q Consensus 190 ~g~nd~~~~l~~l~~~l~~~----~--~~-v~l~p~~p~~--~~~~~~-~~~~e~l~~~~~~l~---~~~g~~v~ir~ 254 (292)
=|+.+...+...++-.+..+ + +. +.+-.+.|.. +..+.+ +.+.+++.++...++ ...|+.+.-|+
T Consensus 242 ~GLge~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE 319 (469)
T PRK09613 242 FGLYDYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRE 319 (469)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCC
Confidence 36677777776666666554 3 33 3333355652 122222 357777777655554 13455554554
No 139
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.87 E-value=2e-07 Score=83.93 Aligned_cols=167 Identities=15% Similarity=0.201 Sum_probs=111.9
Q ss_pred EEEEcCCCCCcCCcCcCCCCCCC-----cCCCCHHH-HHHHHHHhhc--cCCcceEEEecCCccccCHHH----HHHHHH
Q 022752 36 LCISSQVGCKMGCNFCATGTMGF-----KSNLSSGE-IVEQLVHASR--LSNIRNVVFMGMGEPLNNYAA----LVEAVR 103 (292)
Q Consensus 36 l~is~t~gCNl~C~yC~~~~~~~-----~~~~~~ee-i~~~i~~~~~--~~~~~~I~fsG~GEPll~~~~----i~ell~ 103 (292)
..+++..||.+.|.|||...+.. ...+..++ +++.+.+... ......|.++..-||....+. ...+++
T Consensus 31 y~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~ile 110 (297)
T COG1533 31 YTLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKILE 110 (297)
T ss_pred eecCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHHH
Confidence 33444689999999999953322 12234444 6666665322 234567888888899996332 345555
Q ss_pred HHhCCCCCCCCCeEEEEcCCchh--hHHHHhhh--CCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhC
Q 022752 104 IMTGLPFQVSPKRITVSTVGIVH--AINKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 179 (292)
Q Consensus 104 ~~~~~g~~~~~~~i~l~TNG~~~--~~~~l~~~--~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~ 179 (292)
.+.+.| ..+.|.|-+.+. ++..|.+. ...+++.+|+-+.+++..+.+-|. ..+.+.-+++++ .+.+.|
T Consensus 111 i~~~~~-----~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~--apsp~~Ri~al~-~l~eaG 182 (297)
T COG1533 111 ILLKYG-----FPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPR--APSPEERLEALK-ELSEAG 182 (297)
T ss_pred HHHHcC-----CcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCC--CcCHHHHHHHHH-HHHHCC
Confidence 555556 679999998642 22233322 123788899988887787777543 357788899994 467789
Q ss_pred CeEEEEE-EEeCCCCChHHHHHHHHHHHhhCCcE
Q 022752 180 QKIFIEY-IMLDGVNDEEQHAHQLGKLLETFQVV 212 (292)
Q Consensus 180 ~~v~i~~-vl~~g~nd~~~~l~~l~~~l~~~~~~ 212 (292)
+++.+.+ +++|++|| ++++++...+...++.
T Consensus 183 i~~~v~v~PIiP~~~d--~e~e~~l~~~~~ag~~ 214 (297)
T COG1533 183 IPVGLFVAPIIPGLND--EELERILEAAAEAGAR 214 (297)
T ss_pred CeEEEEEecccCCCCh--HHHHHHHHHHHHcCCC
Confidence 9887765 78999988 6788888877777655
No 140
>PRK01254 hypothetical protein; Provisional
Probab=98.83 E-value=4.8e-07 Score=88.20 Aligned_cols=189 Identities=13% Similarity=0.227 Sum_probs=116.6
Q ss_pred CCCCCceEEEEEcCCCCCcCCcCcCCCCCCC--cCCCCHHHHHHHHHHhhc-cCCcceEE---------EecC--Cc---
Q 022752 28 RPGGPRSTLCISSQVGCKMGCNFCATGTMGF--KSNLSSGEIVEQLVHASR-LSNIRNVV---------FMGM--GE--- 90 (292)
Q Consensus 28 ~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~--~~~~~~eei~~~i~~~~~-~~~~~~I~---------fsG~--GE--- 90 (292)
+|.-.-...+|.++.||+.+|.||..+.... -...+.+++++++..... ..++.++. +.|. .+
T Consensus 366 ipA~e~i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~ 445 (707)
T PRK01254 366 IPAYDMIRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRA 445 (707)
T ss_pred CCchhheEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccc
Confidence 4444445566666799999999998864433 256789999999988754 34666665 3331 02
Q ss_pred ---------------ccc--CHHHHHHHHHHHhCC-CCCCCCCeEEEEcC-C--ch---hh-HHHHhhhCCCceEEEEec
Q 022752 91 ---------------PLN--NYAALVEAVRIMTGL-PFQVSPKRITVSTV-G--IV---HA-INKFHSDLPGLNLAVSLH 145 (292)
Q Consensus 91 ---------------Pll--~~~~i~ell~~~~~~-g~~~~~~~i~l~TN-G--~~---~~-~~~l~~~~~~~~l~iSld 145 (292)
+-+ +...+.+|++.+++. |. .++.+.+. - +. .+ ++.+.+....-.+-|-+.
T Consensus 446 ~~~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGV----KkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppE 521 (707)
T PRK01254 446 EQTCRRLSCVYPDICPHLDTDHEPTINLYRRARDLKGI----KKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPE 521 (707)
T ss_pred ccccccccccCcccccccCCCHHHHHHHHHHHHhCCCc----eEEEEEcCCCccccccCHHHHHHHHHhCCccccccccc
Confidence 112 224688999999986 51 24554433 1 11 11 233333221112446678
Q ss_pred CCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCC-CCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 146 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 146 ~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g-~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
+.++++-+.+.++ ....+++..+.++++.++.+..+.+...++-| -++++++++++++|++++++. -++..|.|.
T Consensus 522 H~Sd~VLk~M~Kp-~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPt 598 (707)
T PRK01254 522 HTEEGPLSKMMKP-GMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPS 598 (707)
T ss_pred cCCHHHHHHhCCC-CcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecC
Confidence 8888888766432 23567888888877777777555554433332 456889999999999998865 333344444
No 141
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=98.78 E-value=2.1e-07 Score=89.23 Aligned_cols=181 Identities=14% Similarity=0.276 Sum_probs=105.4
Q ss_pred EEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhccC--C----cceEEEecCCccccCHHHHHHHHHHHhCC
Q 022752 35 TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS--N----IRNVVFMGMGEPLNNYAALVEAVRIMTGL 108 (292)
Q Consensus 35 ~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~~--~----~~~I~fsG~GEPll~~~~i~ell~~~~~~ 108 (292)
.+.+.+++||+++|.||..+.....+.++++++++++....+.. . .+.+.+.| +..+.+.+.+..+...+.+.
T Consensus 199 ~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~-~~~~~~~~~~~~l~~~~~~~ 277 (490)
T COG1032 199 AFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYG-SPALNDEKRFELLSLELIER 277 (490)
T ss_pred EEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecC-CccccchhhcccchHHHHHH
Confidence 56666689999999999997542235566777777776542211 1 12333444 33233333333333333333
Q ss_pred CCC-CCCCeEEEE---cCCch-hhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHH-HHHHHHHhhCCeE
Q 022752 109 PFQ-VSPKRITVS---TVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN-ALKEYQKNSQQKI 182 (292)
Q Consensus 109 g~~-~~~~~i~l~---TNG~~-~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~-~l~~~~~~~~~~v 182 (292)
++. ....++++. ++-.. ..+.++........+.+.+++.+++..+.+. +..+.+.+++ ++ +.+++++..+
T Consensus 278 ~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~---k~~~~~~~~~~a~-~~~~~~~~~~ 353 (490)
T COG1032 278 GLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKIN---KGITTEEVLEEAV-KIAKEHGLRV 353 (490)
T ss_pred hcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHh---CCCChHHHHHHHH-HHHHhCCcee
Confidence 210 011223332 11111 1223333333245677899999999998874 4577888885 77 6777888888
Q ss_pred EEEEEE-eCCCCChHHHHHHH---HHHHhhCCcE--EEEEecCCCC
Q 022752 183 FIEYIM-LDGVNDEEQHAHQL---GKLLETFQVV--VNLIPFNPIG 222 (292)
Q Consensus 183 ~i~~vl-~~g~nd~~~~l~~l---~~~l~~~~~~--v~l~p~~p~~ 222 (292)
.+.+++ +||. +.+++.+. ++++.+++.. +.+.+|.|.+
T Consensus 354 ~~~~i~G~pge--t~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p 397 (490)
T COG1032 354 KLYFIVGLPGE--TEEDVKETIELAKFIKKLGPKLYVSPSPFVPLP 397 (490)
T ss_pred eEEEEEcCCCC--CHHHHHHHHHHHHHHHHhCccceEEEeeeeCCC
Confidence 877776 5664 44455554 7888888765 7777787764
No 142
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=98.70 E-value=2.3e-06 Score=72.39 Aligned_cols=188 Identities=11% Similarity=0.205 Sum_probs=114.2
Q ss_pred CCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhccCCcceEEEecCC-ccccC--HHHHHHHHHHHhCC-CCCCCCCe
Q 022752 41 QVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPLNN--YAALVEAVRIMTGL-PFQVSPKR 116 (292)
Q Consensus 41 t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~G-EPll~--~~~i~ell~~~~~~-g~~~~~~~ 116 (292)
..-|.++|.+|.+......-..+.+++++...++.. .+..++.+|| | +|=.. .....+.++++++. | ..
T Consensus 18 G~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~k-kGy~g~llSG-Gm~srg~VPl~kf~d~lK~lke~~~-----l~ 90 (275)
T COG1856 18 GAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEK-KGYEGCLLSG-GMDSRGKVPLWKFKDELKALKERTG-----LL 90 (275)
T ss_pred ccceEecChHHHHHHHHHhcccchHHHHHHHHHHHh-cCceeEEEeC-CcCCCCCccHHHHHHHHHHHHHhhC-----eE
Confidence 367999999998853322223445777777777654 3788999999 7 22222 34567889999987 5 22
Q ss_pred EEEEcCCchhh--HHHHhhhCCCceEE-EEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCC
Q 022752 117 ITVSTVGIVHA--INKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN 193 (292)
Q Consensus 117 i~l~TNG~~~~--~~~l~~~~~~~~l~-iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~n 193 (292)
+...+ |+-.+ ++++.+++ ++++ +++-+.++-..+-+ +- ..+.++..+.+ ++++++++++..++++-=...
T Consensus 91 inaHv-GfvdE~~~eklk~~~--vdvvsLDfvgDn~vIk~vy-~l--~ksv~dyl~~l-~~L~e~~irvvpHitiGL~~g 163 (275)
T COG1856 91 INAHV-GFVDESDLEKLKEEL--VDVVSLDFVGDNDVIKRVY-KL--PKSVEDYLRSL-LLLKENGIRVVPHITIGLDFG 163 (275)
T ss_pred EEEEe-eeccHHHHHHHHHhc--CcEEEEeecCChHHHHHHH-cC--CccHHHHHHHH-HHHHHcCceeceeEEEEeccC
Confidence 22222 33322 45655553 6654 56666655554433 22 24678888999 678889999888777621111
Q ss_pred ChHHHHHHHHHHHhhCCcE----EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHh
Q 022752 194 DEEQHAHQLGKLLETFQVV----VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 244 (292)
Q Consensus 194 d~~~~l~~l~~~l~~~~~~----v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~ 244 (292)
--..+ .+.++.|.+.... +.++|+... .....++|+.++.-++.++++.
T Consensus 164 ki~~e-~kaIdiL~~~~~DalVl~vliPtpGt-km~~~~pp~~eE~i~v~~~AR~ 216 (275)
T COG1856 164 KIHGE-FKAIDILVNYEPDALVLVVLIPTPGT-KMGNSPPPPVEEAIKVVKYARK 216 (275)
T ss_pred cccch-HHHHHHHhcCCCCeEEEEEEecCCch-hccCCCCcCHHHHHHHHHHHHH
Confidence 11112 2445666665443 344555443 4566778888888887777773
No 143
>PRK05926 hypothetical protein; Provisional
Probab=98.70 E-value=5.8e-07 Score=83.57 Aligned_cols=161 Identities=11% Similarity=0.080 Sum_probs=108.0
Q ss_pred cCCCCCcCCcCcCCCCCC---CcCCCCHHHHHHHHHHhhccCCcceEEEecCCcc-ccCHHHHHHHHHHHhCCCCCCCCC
Q 022752 40 SQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEP-LNNYAALVEAVRIMTGLPFQVSPK 115 (292)
Q Consensus 40 ~t~gCNl~C~yC~~~~~~---~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEP-ll~~~~i~ell~~~~~~g~~~~~~ 115 (292)
.|+.|..+|.||...... ....++++++++.+.+. . .++..+.+.| |+. -+.++.+.++++.+++.- +..
T Consensus 74 ~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~-~G~~ei~iv~-G~~p~~~~e~~~e~i~~Ik~~~---p~i 147 (370)
T PRK05926 74 PTNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-P-SPITETHIVA-GCFPSCNLAYYEELFSKIKQNF---PDL 147 (370)
T ss_pred cCCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-h-cCCCEEEEEe-CcCCCCCHHHHHHHHHHHHHhC---CCe
Confidence 489999999999753221 12458899999999887 3 4788888888 764 345788999999999861 124
Q ss_pred eEEEEcC----------Cch-hh-HHHHhhhCCCceEEE-EecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeE
Q 022752 116 RITVSTV----------GIV-HA-INKFHSDLPGLNLAV-SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 182 (292)
Q Consensus 116 ~i~l~TN----------G~~-~~-~~~l~~~~~~~~l~i-Sld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v 182 (292)
++.-.|- |.. .+ +.+|.+++. ..+.- ..+..+++.++.+.|. +.+.++-++.+ +.+++.|.++
T Consensus 148 ~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl-~~~~g~GaEi~~e~~r~~~~p~--~~t~~e~l~~i-~~a~~~Gi~~ 223 (370)
T PRK05926 148 HIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGL-DSIPGGGAEILVDEIRETLAPG--RLSSQGFLEIH-KTAHSLGIPS 223 (370)
T ss_pred eEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCc-CccCCCCchhcCHHHHHhhCCC--CCCHHHHHHHH-HHHHHcCCcc
Confidence 4443331 111 22 456666542 22221 3455578888877653 35678888889 5678888887
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHhhCCcE
Q 022752 183 FIEYIMLDGVNDEEQHAHQLGKLLETFQVV 212 (292)
Q Consensus 183 ~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~ 212 (292)
....++ |..++.++..+.+..|++++..
T Consensus 224 ~sgmi~--G~gEt~edrv~~l~~Lr~Lq~~ 251 (370)
T PRK05926 224 NATMLC--YHRETPEDIVTHMSKLRALQDK 251 (370)
T ss_pred cCceEE--eCCCCHHHHHHHHHHHHhcCCc
Confidence 766444 4456778888888888888654
No 144
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.70 E-value=1.9e-06 Score=87.63 Aligned_cols=195 Identities=15% Similarity=0.189 Sum_probs=121.2
Q ss_pred EEcCCCCCcCCcCcCCCCCC---CcCCCCHHHHHHHHHHhhccCCcceEEEecCCc-cccCHHHHHHHHHHHhCCCCCCC
Q 022752 38 ISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNNYAALVEAVRIMTGLPFQVS 113 (292)
Q Consensus 38 is~t~gCNl~C~yC~~~~~~---~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE-Pll~~~~i~ell~~~~~~g~~~~ 113 (292)
+..|+.|..+|.||..+... ....++++++++.+.++.. .++..|.+.| |+ |-+..+.+.++++.+|+.. +
T Consensus 530 In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~-~G~tev~i~g-G~~p~~~~~~y~~lir~IK~~~---p 604 (843)
T PRK09234 530 INFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWV-AGATEVCMQG-GIHPELPGTGYADLVRAVKARV---P 604 (843)
T ss_pred eecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHH-CCCCEEEEec-CCCCCcCHHHHHHHHHHHHHhC---C
Confidence 34579999999999765321 1345899999999998766 4888999988 85 5566778899999999873 1
Q ss_pred CCeEEEEc----------CCchh--hHHHHhhhCCCceEEE-EecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCC
Q 022752 114 PKRITVST----------VGIVH--AINKFHSDLPGLNLAV-SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180 (292)
Q Consensus 114 ~~~i~l~T----------NG~~~--~~~~l~~~~~~~~l~i-Sld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~ 180 (292)
.+++.-.| .|+.. .+.+|.+++. ..+-- +=.-.+++++..+.|. +.+.++-++.+ +.+++.|.
T Consensus 605 ~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGL-ds~pgt~aeil~d~vr~~i~p~--k~~~~~wle~i-~~Ah~lGi 680 (843)
T PRK09234 605 SMHVHAFSPMEIVNGAARLGLSIREWLTALREAGL-DTIPGTAAEILDDEVRWVLTKG--KLPTAEWIEVV-TTAHEVGL 680 (843)
T ss_pred CeeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCc-CccCCCchhhCCHHHHhhcCCC--CCCHHHHHHHH-HHHHHcCC
Confidence 24443332 34432 2456666653 22211 1122355666666643 34555567777 55777788
Q ss_pred eEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE----EEEEe--cCCCC-CC--C--CcCCCcHHHHHHHHHHHH
Q 022752 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV----VNLIP--FNPIG-SV--S--QFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 181 ~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~----v~l~p--~~p~~-~~--~--~~~~~~~e~l~~~~~~l~ 243 (292)
++.-.+++ |..++.++..+.+.+|++++.. ..++| |.+.. +. . ..+.++.++..+.....+
T Consensus 681 ~~~stmm~--G~~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaR 752 (843)
T PRK09234 681 RSSSTMMY--GHVDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALAR 752 (843)
T ss_pred CcccceEE--cCCCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHH
Confidence 76654443 5567888899999999988643 22333 43321 11 1 234567777666555444
No 145
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.61 E-value=2.8e-06 Score=79.57 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=77.2
Q ss_pred EcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHH
Q 022752 120 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHA 199 (292)
Q Consensus 120 ~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l 199 (292)
.||=+-.++.++.+.. ..-+.||+++.+++.|.++++. ....++++.+++ +.++++.++.++|++||+||.+ ++
T Consensus 123 LTNl~~~d~~RI~~~~-lspl~iSVhat~p~lR~~ll~n---~~a~~il~~l~~-l~~~~I~~h~qiVlcPGiNDg~-~L 196 (433)
T TIGR03279 123 LTNLPPAEWQRIEQLR-LSPLYVSVHATEPSLRARLLKN---PRAGLILEQLKW-FQERRLQLHAQVVVCPGINDGK-HL 196 (433)
T ss_pred ecCCCHHHHHHHHHcC-CCCEEEEEecCCHHHHHHHhCC---CCHHHHHHHHHH-HHHcCCeEEEEEEEcCCcCCHH-HH
Confidence 4564444455555543 2558899999999999999753 356889999954 5567899999999999999974 78
Q ss_pred HHHHHHHhhC----CcEEEEEecCCCC--C----CCCcCCCcHHHHHHHH
Q 022752 200 HQLGKLLETF----QVVVNLIPFNPIG--S----VSQFRTSSDDKVSSFQ 239 (292)
Q Consensus 200 ~~l~~~l~~~----~~~v~l~p~~p~~--~----~~~~~~~~~e~l~~~~ 239 (292)
++.++.|.++ ...+.-+..-|.| . .....+.+.++..++.
T Consensus 197 ~~Ti~dL~~~~~~~~P~v~S~avVPVGlTk~R~~l~~l~~~~~e~A~~vi 246 (433)
T TIGR03279 197 ERTLRDLAQFHDGDWPTVLSVAVVPVGLTRFRPEEDELTPVTPECARRVI 246 (433)
T ss_pred HHHHHHHHhhcccCCCceeEEEEEccccccCCCCCCCCccCCHHHHHHHH
Confidence 8888888877 3434444444444 1 1233555666555443
No 146
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.58 E-value=2e-05 Score=76.26 Aligned_cols=205 Identities=11% Similarity=0.197 Sum_probs=120.3
Q ss_pred CCceEEEEEcCCCCCc-CCcCcCCCCC---------CC---------cCCCCHHHHHHHHHHhhccC-Ccc--eEEEecC
Q 022752 31 GPRSTLCISSQVGCKM-GCNFCATGTM---------GF---------KSNLSSGEIVEQLVHASRLS-NIR--NVVFMGM 88 (292)
Q Consensus 31 ~~r~~l~is~t~gCNl-~C~yC~~~~~---------~~---------~~~~~~eei~~~i~~~~~~~-~~~--~I~fsG~ 88 (292)
|+..+-.++.-..||+ +|.||..+-. +. .+..+..++.+.+.+..... .++ .+.|.|
T Consensus 65 gv~~v~vm~~p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~G- 143 (522)
T TIGR01211 65 GVAVVAVMTSPHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMG- 143 (522)
T ss_pred CeEEEEEecCCccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEEC-
Confidence 3555555555578996 6999998421 00 02234566666666554321 233 448999
Q ss_pred CccccCH-HHHHHHHHHHhCC--CCC--------------------CCCCeEEEEcCCch--hh-HHHHhhhCCCceEEE
Q 022752 89 GEPLNNY-AALVEAVRIMTGL--PFQ--------------------VSPKRITVSTVGIV--HA-INKFHSDLPGLNLAV 142 (292)
Q Consensus 89 GEPll~~-~~i~ell~~~~~~--g~~--------------------~~~~~i~l~TNG~~--~~-~~~l~~~~~~~~l~i 142 (292)
|-++..+ +....+++.+.+. ++. .....+++.|+--. .+ +..+.+.+ ...+.+
T Consensus 144 GTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G-~~rVsl 222 (522)
T TIGR01211 144 GTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLG-ATRVEL 222 (522)
T ss_pred CCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcC-CCEEEE
Confidence 9999863 3344444444332 100 01256677776422 22 34444443 456778
Q ss_pred EecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCC-CChHHHHHHHHHHHhh---CCcE-EEEEe
Q 022752 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLET---FQVV-VNLIP 217 (292)
Q Consensus 143 Sld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~-nd~~~~l~~l~~~l~~---~~~~-v~l~p 217 (292)
.+.+.++++.+.+ +++.+.+++++++ +.+++.|..+.+.+ +.|+ +++.++..+.++.+.. +++. +.+.|
T Consensus 223 GVQS~~d~VL~~i---nRght~~~v~~Ai-~~lr~~G~~v~~~L--M~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiyp 296 (522)
T TIGR01211 223 GVQTIYNDILERT---KRGHTVRDVVEAT-RLLRDAGLKVVYHI--MPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYP 296 (522)
T ss_pred ECccCCHHHHHHh---CCCCCHHHHHHHH-HHHHHcCCeEEEEe--ecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEec
Confidence 9999999999887 4567899999999 56788887655554 4442 3455566666666653 5554 66666
Q ss_pred cCCCC--------CCCCcCCCcHHHHHHHHHHHH
Q 022752 218 FNPIG--------SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 218 ~~p~~--------~~~~~~~~~~e~l~~~~~~l~ 243 (292)
..+.. ....|.+++.+++..+...+.
T Consensus 297 l~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~ 330 (522)
T TIGR01211 297 TLVTRGTELYELWKRGEYKPYTTEEAVELIVEIK 330 (522)
T ss_pred ceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 44332 124567777777665544433
No 147
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.57 E-value=3.3e-06 Score=85.93 Aligned_cols=193 Identities=11% Similarity=0.145 Sum_probs=122.3
Q ss_pred EEEEcCCCCCcCCcCcCCCCC-C--CcCCCCHHHHHHHHHHhhccCCcceEEEecCCc-cccC----------------H
Q 022752 36 LCISSQVGCKMGCNFCATGTM-G--FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNN----------------Y 95 (292)
Q Consensus 36 l~is~t~gCNl~C~yC~~~~~-~--~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE-Pll~----------------~ 95 (292)
+++..|+.|..+|.||.-... . ....++++|+++.+.+... .++..+.|+| |+ |-.. .
T Consensus 73 ~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~-~G~~e~l~t~-G~~P~~~~~~~~~~l~~~gy~~~~ 150 (843)
T PRK09234 73 VFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAA-AGCKEALFTL-GDRPEDRWPEAREWLDERGYDSTL 150 (843)
T ss_pred EEecCCCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHH-CCCCEEEEec-CCCCccccccccccccccccccHH
Confidence 577778999999999966422 1 2246899999999988765 4788899999 87 4432 3
Q ss_pred HHHHHHHHHHhCC-CCCCCCCeEEEEcCCch--hhHHHHhhhCCCceEEEEecCCChHHHhhh-----cCcccCccHHHH
Q 022752 96 AALVEAVRIMTGL-PFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQI-----MPAARAFPLEKL 167 (292)
Q Consensus 96 ~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~--~~~~~l~~~~~~~~l~iSld~~~~~~~~~i-----~~~~~~~~~~~v 167 (292)
+.+.++++.+++. | ....++- |.+ .++..|.+.+ .+..++++...+..|.+. ..+. -.++.-
T Consensus 151 ey~~~~~~~ik~~~g-----l~p~i~~-G~ls~~E~~~Lk~~g--~s~gl~lEt~~~~l~~~~g~~h~~~P~--K~~~~R 220 (843)
T PRK09234 151 DYVRAMAIRVLEETG-----LLPHLNP-GVMSWSELARLKPVA--PSMGMMLETTSRRLFEEKGGPHYGSPD--KDPAVR 220 (843)
T ss_pred HHHHHHHHHHHHhcC-----CCceeee-CCCCHHHHHHHHHhc--CcCCCCHHHHHHHHHHhhcccccCCCC--CCHHHH
Confidence 7788899999874 4 2233322 332 2355665554 233355555455554321 1111 123344
Q ss_pred HHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhC-----CcE-EEEEecCCCC--CCCCcCCCcHHHHHHHH
Q 022752 168 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-----QVV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQ 239 (292)
Q Consensus 168 i~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~-----~~~-v~l~p~~p~~--~~~~~~~~~~e~l~~~~ 239 (292)
++.+ +.+.+.|.++.. .++=|..++.++..+.+..|+++ ++. +-+.+|.|.. +..+.+.++.+++.+..
T Consensus 221 L~ti-~~A~~lGi~~ts--G~L~GiGEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~i 297 (843)
T PRK09234 221 LRVL-EDAGRLSVPFTT--GILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATI 297 (843)
T ss_pred HHHH-HHHHHcCCCccc--eEEEECCCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHH
Confidence 7777 567777877554 44446677888888877778776 344 5566777752 34456678888887766
Q ss_pred HHHH
Q 022752 240 KILR 243 (292)
Q Consensus 240 ~~l~ 243 (292)
...+
T Consensus 298 AvaR 301 (843)
T PRK09234 298 AVAR 301 (843)
T ss_pred HHHH
Confidence 6554
No 148
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=98.44 E-value=1.6e-05 Score=73.70 Aligned_cols=197 Identities=17% Similarity=0.140 Sum_probs=113.5
Q ss_pred EEEcCCCCCcCCcCcCCCCCC---CcCCCCHHHHHHHHHHhhccCCcceEEEecCCc-cccCHHHHHHHHHHHhCCCCCC
Q 022752 37 CISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNNYAALVEAVRIMTGLPFQV 112 (292)
Q Consensus 37 ~is~t~gCNl~C~yC~~~~~~---~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE-Pll~~~~i~ell~~~~~~g~~~ 112 (292)
++..|+-|..+|.||.-.... ....++++|+.+++.+.... |+..|.|.| || |-..++...++++.+++.-
T Consensus 62 ~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~-G~~Evli~g-G~~p~~~~~y~~~~~~~ik~~~--- 136 (370)
T COG1060 62 NINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKR-GITEVLIVG-GEHPELSLEYYEELFRTIKEEF--- 136 (370)
T ss_pred cCCcchhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHHc-CCeEEEEec-CcCCCcchHHHHHHHHHHHHhC---
Confidence 346789999999999553222 23479999999999998764 899999999 85 6666788899999999741
Q ss_pred CCCeEEEEcCC-c----------hhh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCC
Q 022752 113 SPKRITVSTVG-I----------VHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180 (292)
Q Consensus 113 ~~~~i~l~TNG-~----------~~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~ 180 (292)
+.+.+.--|++ + ..+ +++|.+++......-.-.-..++.++.+.+ .+.+.+.-++.+ +.+.+.|+
T Consensus 137 p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p--~K~~~~~wle~~-~~Ah~lGI 213 (370)
T COG1060 137 PDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCP--PKKSPEEWLEIH-ERAHRLGI 213 (370)
T ss_pred cchhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCC--CCCCHHHHHHHH-HHHHHcCC
Confidence 12344444444 1 112 445555442111111111123455555553 346778788888 56777888
Q ss_pred eEEEEEEEeCCCCChHHHHHHHHHHHhh----CC-cE-EEEEecCCCCC---CCCcCCCcHHHHHHHHHHHH
Q 022752 181 KIFIEYIMLDGVNDEEQHAHQLGKLLET----FQ-VV-VNLIPFNPIGS---VSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 181 ~v~i~~vl~~g~nd~~~~l~~l~~~l~~----~~-~~-v~l~p~~p~~~---~~~~~~~~~e~l~~~~~~l~ 243 (292)
+.+...++. ++.+ .++..+-...+.. .+ +. +-+.+|.|... ......++..++.+..+..+
T Consensus 214 ~~tatml~G-h~E~-~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaR 283 (370)
T COG1060 214 PTTATMLLG-HVET-REDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALAR 283 (370)
T ss_pred CccceeEEE-ecCC-HHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHH
Confidence 776654443 3333 3333333333333 23 32 44445666531 12234456666666555444
No 149
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=98.26 E-value=0.00023 Score=67.45 Aligned_cols=176 Identities=15% Similarity=0.172 Sum_probs=111.1
Q ss_pred ceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHH----HHHHHHhhccC----CcceEEEecCCccccC-HHHHHHHHH
Q 022752 33 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI----VEQLVHASRLS----NIRNVVFMGMGEPLNN-YAALVEAVR 103 (292)
Q Consensus 33 r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei----~~~i~~~~~~~----~~~~I~fsG~GEPll~-~~~i~ell~ 103 (292)
..++++.. .-|.-.|.||.-...........++. .+++....... .+..|.|-| |.|++- ++.+..++.
T Consensus 34 ~~slYiHi-PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GG-GTPslL~~~~l~~ll~ 111 (416)
T COG0635 34 PLSLYIHI-PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGG-GTPSLLSPEQLERLLK 111 (416)
T ss_pred ceEEEEEc-ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECC-CccccCCHHHHHHHHH
Confidence 48888876 88999999997743322222222323 33343322211 367888999 999874 667888888
Q ss_pred HHhCCCC-CC-CCCeEEEEcCCchhh---HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh
Q 022752 104 IMTGLPF-QV-SPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178 (292)
Q Consensus 104 ~~~~~g~-~~-~~~~i~l~TNG~~~~---~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~ 178 (292)
.+++. + .. ....+++..|=...+ ...+.+.+ .-.+.+-+.+.+++..+.+.+ ..+.+.+.+++. .+++.
T Consensus 112 ~l~~~-~~~~~~~~EitiE~nP~~~~~e~~~~l~~~G-vNRiSlGVQsf~~~~lk~lgR---~h~~~~~~~a~~-~~~~~ 185 (416)
T COG0635 112 ALREL-FNDLDPDAEITIEANPGTVEAEKFKALKEAG-VNRISLGVQSFNDEVLKALGR---IHDEEEAKEAVE-LARKA 185 (416)
T ss_pred HHHHh-cccCCCCceEEEEeCCCCCCHHHHHHHHHcC-CCEEEeccccCCHHHHHHhcC---CCCHHHHHHHHH-HHHHc
Confidence 88765 3 12 227889998853222 33444444 346777778999999988854 357788888884 45444
Q ss_pred CC-eEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEec
Q 022752 179 QQ-KIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPF 218 (292)
Q Consensus 179 ~~-~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~ 218 (292)
+. .+.+-.+. +| +.+.+++.+-.+.+.++++. +.+..+
T Consensus 186 g~~~in~DLIyglP--~QT~~~~~~~l~~a~~l~pdhis~y~L 226 (416)
T COG0635 186 GFTSINIDLIYGLP--GQTLESLKEDLEQALELGPDHLSLYSL 226 (416)
T ss_pred CCCcEEEEeecCCC--CCCHHHHHHHHHHHHhCCCCEEEEeee
Confidence 32 34444333 34 35778888888888888765 554443
No 150
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=98.21 E-value=0.00016 Score=67.50 Aligned_cols=204 Identities=15% Similarity=0.177 Sum_probs=112.0
Q ss_pred CCceEEEEEcCCCCCc-CCcCcCCCC------CCCc-----------CCCCHHHHHHHHHHh---hccCCcceEEEecCC
Q 022752 31 GPRSTLCISSQVGCKM-GCNFCATGT------MGFK-----------SNLSSGEIVEQLVHA---SRLSNIRNVVFMGMG 89 (292)
Q Consensus 31 ~~r~~l~is~t~gCNl-~C~yC~~~~------~~~~-----------~~~~~eei~~~i~~~---~~~~~~~~I~fsG~G 89 (292)
|+..+-.+..-.+||+ +|.||..+- ...+ ..-+..++...+.+. .+...--.+.|.| |
T Consensus 64 gvaVVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimG-G 142 (515)
T COG1243 64 GVAVVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMG-G 142 (515)
T ss_pred cceEEEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEec-c
Confidence 3555555566689998 999998862 1111 112233444444333 2222223788999 8
Q ss_pred ccccC-HHHHHHHHHHHhCC--CC--------------CCCCCeEEEEcCCchhh---HHHHhhhCCCceEEEEecCCCh
Q 022752 90 EPLNN-YAALVEAVRIMTGL--PF--------------QVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQ 149 (292)
Q Consensus 90 EPll~-~~~i~ell~~~~~~--g~--------------~~~~~~i~l~TNG~~~~---~~~l~~~~~~~~l~iSld~~~~ 149 (292)
--+.. .+.-.++++.+++. +| ..+-..+++.|---+-. +..++..+ ...+-+.+.+..+
T Consensus 143 TFta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG-~TrVELGVQSiyd 221 (515)
T COG1243 143 TFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYG-VTRVELGVQSIYD 221 (515)
T ss_pred cccCCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcC-CcEEEEeeeeHHH
Confidence 76654 22223333333322 00 01124477777653221 23333332 2345567777778
Q ss_pred HHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE---EEEEecC---CCC
Q 022752 150 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV---VNLIPFN---PIG 222 (292)
Q Consensus 150 ~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~---v~l~p~~---p~~ 222 (292)
++.+.. +++.+.+++.++. ++++++|-++..+++. +||. |.+.+++...+.+..-.+. +.+.|-- ...
T Consensus 222 ~Vl~~~---~RGHtvedv~~a~-rLlKd~GfKv~~HiMpGLPgs-~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~ 296 (515)
T COG1243 222 DVLERT---KRGHTVEDVVEAT-RLLKDAGFKVGYHIMPGLPGS-DFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTE 296 (515)
T ss_pred HHHHHh---cCCccHHHHHHHH-HHHHhcCcEEEEEecCCCCCC-ChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCch
Confidence 887765 5668999999999 7899998877766443 4442 3456777777766654332 4444321 111
Q ss_pred -----CCCCcCCCcHHHHHHHHHH
Q 022752 223 -----SVSQFRTSSDDKVSSFQKI 241 (292)
Q Consensus 223 -----~~~~~~~~~~e~l~~~~~~ 241 (292)
....|++-+.|+.-++...
T Consensus 297 Ly~mwk~G~Ykpy~~EEaVeli~~ 320 (515)
T COG1243 297 LYEMWKRGLYKPYTTEEAVELIVE 320 (515)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHH
Confidence 2345777777775554433
No 151
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=98.20 E-value=0.00036 Score=61.13 Aligned_cols=204 Identities=15% Similarity=0.205 Sum_probs=122.3
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhccCCcceEEEecCC-cccc--CHHHHHHHHHHHhCC
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPLN--NYAALVEAVRIMTGL 108 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~G-EPll--~~~~i~ell~~~~~~ 108 (292)
+..++.|. ..-|.-+|.||...... ...++++|=...++..+. .+.+.|++|+.- +=|- -...+.+.++.+++.
T Consensus 69 ~tATFmIm-G~~CTR~C~FC~V~~g~-P~~lD~~EP~rvAeaV~~-mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~ 145 (306)
T COG0320 69 GTATFMIL-GDICTRRCRFCDVKTGR-PNPLDPDEPERVAEAVKD-MGLKYVVITSVDRDDLPDGGAQHFAECIRAIREL 145 (306)
T ss_pred CceEEeec-cchhccCCCccccCCCC-CCCCCCchHHHHHHHHHH-hCCCeEEEEeeccccccccchHHHHHHHHHHHhh
Confidence 34555553 57799999999986544 344555543333333332 478899998731 1111 134678899999988
Q ss_pred CCCCCCCeEEEEcCCch---hhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEE
Q 022752 109 PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 185 (292)
Q Consensus 109 g~~~~~~~i~l~TNG~~---~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~ 185 (292)
. +...|-+.|--+. ..+..++++.+.+ ++=-++. -+..+..++ .+.++++.++-+ +.+++.+..+.-.
T Consensus 146 ~---P~t~iEvL~PDF~G~~~al~~v~~~~pdV-~nHNvET-VprL~~~VR---p~A~Y~~SL~~L-~~~k~~~P~i~TK 216 (306)
T COG0320 146 N---PQTTIEVLTPDFRGNDDALEIVADAGPDV-FNHNVET-VPRLYPRVR---PGATYERSLSLL-ERAKELGPDIPTK 216 (306)
T ss_pred C---CCceEEEeCccccCCHHHHHHHHhcCcch-hhccccc-chhcccccC---CCCcHHHHHHHH-HHHHHhCCCcccc
Confidence 4 2356666665332 2244555554321 1101111 133344433 346788888888 4566666555555
Q ss_pred EEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecC-CCCCCCCc-CCCcHHHHHHHHHHHHhcCCe
Q 022752 186 YIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFN-PIGSVSQF-RTSSDDKVSSFQKILRGSYNI 248 (292)
Q Consensus 186 ~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~-p~~~~~~~-~~~~~e~l~~~~~~l~~~~g~ 248 (292)
.-++-|+.++.+++.+..+-|.+.|+. +.+-+|. |...+... ...++++.++++++.. ..|+
T Consensus 217 SgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~-~~GF 281 (306)
T COG0320 217 SGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAE-EMGF 281 (306)
T ss_pred cceeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCCccccCCceeccCHHHHHHHHHHHH-Hccc
Confidence 556667888889999999999999988 4444553 44322221 2357889999999888 6776
No 152
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.19 E-value=0.00047 Score=61.80 Aligned_cols=188 Identities=15% Similarity=0.197 Sum_probs=117.0
Q ss_pred CCCCCCCCCCCceEEEEEcCCCCCcC----CcCcCCCCCCCcCCCCHHHHHHHHHHhhccCC---cc-eEE-EecCCccc
Q 022752 22 KYNGKPRPGGPRSTLCISSQVGCKMG----CNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---IR-NVV-FMGMGEPL 92 (292)
Q Consensus 22 ~~~g~~~~~~~r~~l~is~t~gCNl~----C~yC~~~~~~~~~~~~~eei~~~i~~~~~~~~---~~-~I~-fsG~GEPl 92 (292)
.+.|. ++.+.++++. |.||-.. |.||.-.....+...+.+.++.+++++..... -+ .|- ||. | -+
T Consensus 39 ~~~g~---~~k~l~vILr-T~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTS-G-SF 112 (358)
T COG1244 39 RLRGY---PGKSLTVILR-TRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTS-G-SF 112 (358)
T ss_pred ccCCC---cCceEEEEEe-cCCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcc-c-cc
Confidence 44552 4566666664 6899654 88996654433667889999999998643211 12 233 555 6 45
Q ss_pred cCH-----HHHHHHHHHHhCCCCCCCCCeEEEEcCCchh--h-HHHHhhh--CCCceEEEEecCCChHHHhhhcCcccCc
Q 022752 93 NNY-----AALVEAVRIMTGLPFQVSPKRITVSTVGIVH--A-INKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARAF 162 (292)
Q Consensus 93 l~~-----~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~--~-~~~l~~~--~~~~~l~iSld~~~~~~~~~i~~~~~~~ 162 (292)
|++ +....+++.+.+.+ . -..+.+.|---.. + +.++.+. +..+.+.|.|++.+++++..-. +++.
T Consensus 113 LD~~EVP~e~R~~Il~~is~~~-~--v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sI--NKGf 187 (358)
T COG1244 113 LDPEEVPREARRYILERISEND-N--VKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSI--NKGF 187 (358)
T ss_pred CChhhCCHHHHHHHHHHHhhcc-c--eeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhh--hcCC
Confidence 553 23456677777662 0 1467777765221 1 3344443 2346788999999999985432 6789
Q ss_pred cHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCC
Q 022752 163 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 221 (292)
Q Consensus 163 ~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~ 221 (292)
+|++.++++ +.++.+|..+....++-|-+-...+.++++.+.+.........+.++|.
T Consensus 188 tF~df~~A~-~~ir~~g~~vktYlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iSinpt 245 (358)
T COG1244 188 TFEDFVRAA-EIIRNYGAKVKTYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISINPT 245 (358)
T ss_pred cHHHHHHHH-HHHHHcCCceeEEEEecccccChHHHHHHHHHHHHHhccCCCeEEeccc
Confidence 999999999 6678888887776665555555556677777777654222333334554
No 153
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=97.97 E-value=0.00042 Score=62.02 Aligned_cols=196 Identities=15% Similarity=0.262 Sum_probs=124.1
Q ss_pred ceEEEEEcC--CCCCcCCcCcCCCCC--CC--c--------CCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHH
Q 022752 33 RSTLCISSQ--VGCKMGCNFCATGTM--GF--K--------SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAAL 98 (292)
Q Consensus 33 r~~l~is~t--~gCNl~C~yC~~~~~--~~--~--------~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i 98 (292)
-.++++.++ .+|-.+|.||..... .. . .....+++.+.+..... ..+.|.++-.-+|=.. .++
T Consensus 28 ~~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g--~~~rici~~i~~p~~~-~d~ 104 (339)
T COG2516 28 PTTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLG--NFKRICIQQIAYPRAL-NDL 104 (339)
T ss_pred cceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhc--ccccccceeecccccc-chh
Confidence 456677666 899999999977421 11 1 11233455555544211 2355555554556665 457
Q ss_pred HHHHHHHh-CCCCCCCCCeEEEE----cCCchhhHHHHhhhCCCceEEEEecCCChHHHhhh-cCcccCccHHHHHHHHH
Q 022752 99 VEAVRIMT-GLPFQVSPKRITVS----TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI-MPAARAFPLEKLMNALK 172 (292)
Q Consensus 99 ~ell~~~~-~~g~~~~~~~i~l~----TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i-~~~~~~~~~~~vi~~l~ 172 (292)
..+++.++ ..+ ..++|. --++...+....+.+ ..-+.|.+|+.+++.++++ +..+...++++-++.+.
T Consensus 105 ~~i~~~~~~~~~-----~~itiseci~~~~~~~~l~e~~klg-~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~ 178 (339)
T COG2516 105 KLILERLHIRLG-----DPITISECITAVSLKEELEEYRKLG-ADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLE 178 (339)
T ss_pred hhhhhhhhhccC-----CceehhhhhhcccchHHHHHHHhcc-hhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHH
Confidence 78888887 444 233333 223323333444332 2335578899999999998 44444578999999997
Q ss_pred HHHHhhC-CeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCC--CCCCcCCCcHHHHHHHH
Q 022752 173 EYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG--SVSQFRTSSDDKVSSFQ 239 (292)
Q Consensus 173 ~~~~~~~-~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~--~~~~~~~~~~e~l~~~~ 239 (292)
+.+...+ .++.+.+.+ |...++.++-+....+...+-.+++..|.|.. ...+..+++.+.+.+.+
T Consensus 179 ~~~~~~~k~rv~ihliV--glGesD~~~ve~~~~v~~~g~~v~Lfaf~P~~gt~me~r~~~pve~Yrk~q 246 (339)
T COG2516 179 KVAEAFGKGRVGIHLIV--GLGESDKDIVETIKRVRKRGGIVSLFAFTPLKGTQMENRKPPPVERYRKIQ 246 (339)
T ss_pred HHHHHhccCCcceeEEe--ccCCchHHHHHHHHHHHhcCceEEEEEecccccccccCCCCCcHHHHHHHH
Confidence 7777776 556665544 35567788888888888888889999999864 24456677877766644
No 154
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=97.85 E-value=0.00023 Score=66.00 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=80.5
Q ss_pred EEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCcc
Q 022752 84 VFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 163 (292)
Q Consensus 84 ~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~ 163 (292)
.++=.|||-++ +.+-.+++.++++. +...+-||..+++ .++...+...+.+|+++.+......+-++..++=
T Consensus 358 alslVgepi~y-p~in~f~k~lH~k~-----issflvtnaq~pe--~~rnvk~vtqlyvsvda~Tktslk~idrPlfkdF 429 (601)
T KOG1160|consen 358 ALSLVGEPIMY-PEINPFAKLLHQKL-----ISSFLVTNAQFPE--DIRNVKPVTQLYVSVDASTKTSLKKIDRPLFKDF 429 (601)
T ss_pred eeeeecccccc-hhhhHHHHHHHhcc-----chHHhcccccChH--HHhchhhhheeEEEEeecchhhhcCCCCchHHHH
Confidence 33444699996 77999999999986 6778889988765 3333333456888999998888777654433444
Q ss_pred HHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhh
Q 022752 164 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET 208 (292)
Q Consensus 164 ~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~ 208 (292)
+|+.++.++. +++......++++++++.|. +++.+-++++..
T Consensus 430 wEr~~d~l~~-lk~K~qrtvyRlTlVkg~n~--dd~~Ayfnlv~r 471 (601)
T KOG1160|consen 430 WERFLDSLKA-LKKKQQRTVYRLTLVKGWNS--DDLPAYFNLVSR 471 (601)
T ss_pred HHHHHHHHHH-HHHhhcceEEEEEEeccccc--cccHHHHHHHhc
Confidence 5666666633 33444567889999998765 467888877765
No 155
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=97.69 E-value=0.013 Score=51.84 Aligned_cols=183 Identities=14% Similarity=0.097 Sum_probs=111.8
Q ss_pred cCCCCHHHHHHHHHHhhccCCcceEEEecCCccc----cCHHHHHHHHHHHhCCCCCCCCCeE-EEEcCCchhhHHHHhh
Q 022752 59 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL----NNYAALVEAVRIMTGLPFQVSPKRI-TVSTVGIVHAINKFHS 133 (292)
Q Consensus 59 ~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPl----l~~~~i~ell~~~~~~g~~~~~~~i-~l~TNG~~~~~~~l~~ 133 (292)
...++.++..+.+..... .+++.|-+.+ |+|. +. +...++++++++.+. ...+ .+.+|| ...+..+.+
T Consensus 13 ~~~~s~e~~~~i~~~L~~-~GV~~IEvg~-~~~~~~~p~~-~~~~~~i~~l~~~~~---~~~~~~l~~~~-~~~i~~a~~ 85 (265)
T cd03174 13 GATFSTEDKLEIAEALDE-AGVDSIEVGS-GASPKAVPQM-EDDWEVLRAIRKLVP---NVKLQALVRNR-EKGIERALE 85 (265)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEecc-CcCccccccC-CCHHHHHHHHHhccC---CcEEEEEccCc-hhhHHHHHh
Confidence 345688888877777654 4899999999 9887 33 335678888887642 1344 677777 222445455
Q ss_pred hCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-
Q 022752 134 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV- 212 (292)
Q Consensus 134 ~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~- 212 (292)
.+ ...+.+++.+.+.....+.. ......++.+++.+ +++++.|..+.+.+.-.-.--.+.+++.++++.+.+.|+.
T Consensus 86 ~g-~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i-~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~ 162 (265)
T cd03174 86 AG-VDEVRIFDSASETHSRKNLN-KSREEDLENAEEAI-EAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADE 162 (265)
T ss_pred CC-cCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHH-HHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCE
Confidence 43 34566777665433233222 12334678888888 5677888888877743322014667899999999999876
Q ss_pred EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCC-eE--EEeecccccc
Q 022752 213 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN-IR--TTVRKQMGQD 259 (292)
Q Consensus 213 v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g-~~--v~ir~~~g~~ 259 (292)
+.+.+.. . ..+++++.++.+.+++..+ ++ +......|..
T Consensus 163 i~l~Dt~------G--~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla 204 (265)
T cd03174 163 ISLKDTV------G--LATPEEVAELVKALREALPDVPLGLHTHNTLGLA 204 (265)
T ss_pred EEechhc------C--CcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChH
Confidence 5553221 1 2456677766666653333 33 3444444443
No 156
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=97.61 E-value=0.003 Score=55.48 Aligned_cols=198 Identities=14% Similarity=0.166 Sum_probs=110.5
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCCCcCC---CCHHHHHHHHHHhhccCCcceEEEecCC---ccccCHHHHHHHHHHHhC
Q 022752 34 STLCISSQVGCKMGCNFCATGTMGFKSN---LSSGEIVEQLVHASRLSNIRNVVFMGMG---EPLNNYAALVEAVRIMTG 107 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~~~~~---~~~eei~~~i~~~~~~~~~~~I~fsG~G---EPll~~~~i~ell~~~~~ 107 (292)
.+|.+. .--|.-.|+||.......... +.|+-..+.|.. .+++.|+++..- =|=.-..+|.+.++++|+
T Consensus 112 ATIMlm-GDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIas----Wgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~ 186 (360)
T KOG2672|consen 112 ATIMLM-GDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIAS----WGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKE 186 (360)
T ss_pred EEEEee-cCccccCcceeeeecCCCCcCCCCCCcccHHHHHHH----cCCCeEEEEecccccCcCcchHHHHHHHHHHHh
Confidence 344442 456999999998865444333 344445554443 378889988631 122225689999999998
Q ss_pred CCCCCCCCeEEEEcC---CchhhHHHHhhhCCCceEE---E-EecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCC
Q 022752 108 LPFQVSPKRITVSTV---GIVHAINKFHSDLPGLNLA---V-SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180 (292)
Q Consensus 108 ~g~~~~~~~i~l~TN---G~~~~~~~l~~~~~~~~l~---i-Sld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~ 180 (292)
+.. .+-+...|- |-+..++.++..+ .|+. | .++...+.+++ ....+++.+..+ +.+++...
T Consensus 187 k~p---~ilvE~L~pDF~Gd~~~Ve~va~SG--LDV~AHNvETVe~Ltp~VRD------~RA~yrQSL~VL-k~aK~~~P 254 (360)
T KOG2672|consen 187 KAP---EILVECLTPDFRGDLKAVEKVAKSG--LDVYAHNVETVEELTPFVRD------PRANYRQSLSVL-KHAKEVKP 254 (360)
T ss_pred hCc---ccchhhcCccccCchHHHHHHHhcC--ccceecchhhHHhcchhhcC------cccchHHhHHHH-HHHHhhCC
Confidence 741 122222221 1122234555444 2322 2 22333333332 235788888888 56776665
Q ss_pred eEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC-CCCC-cCCCcHHHHHHHHHHHHhcCCeE
Q 022752 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG-SVSQ-FRTSSDDKVSSFQKILRGSYNIR 249 (292)
Q Consensus 181 ~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~-~~~~-~~~~~~e~l~~~~~~l~~~~g~~ 249 (292)
.+.-.+.++-|..++.+++.+..+.|...++. +.+-+|++-. .+.. .....++..+.-.+.-. ..|+.
T Consensus 255 ~litktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~eyvtpekf~~w~~~~~-~lgf~ 325 (360)
T KOG2672|consen 255 GLITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVKEYVTPEKFDYWKEYGE-ELGFL 325 (360)
T ss_pred CceehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCCccccceeEEeeCHHHHHHHHHHhh-hcceE
Confidence 55555556667778888999999999988887 4455665432 1111 11234454444444444 45543
No 157
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.50 E-value=0.046 Score=48.37 Aligned_cols=196 Identities=13% Similarity=0.189 Sum_probs=112.9
Q ss_pred CCcCcCCCCC---CCcCCCCHH-HHHHHHHHhh-ccCCcceEE-EecCCccccC-HHHHHHHHHHHhCC-CCCCCCCeEE
Q 022752 47 GCNFCATGTM---GFKSNLSSG-EIVEQLVHAS-RLSNIRNVV-FMGMGEPLNN-YAALVEAVRIMTGL-PFQVSPKRIT 118 (292)
Q Consensus 47 ~C~yC~~~~~---~~~~~~~~e-ei~~~i~~~~-~~~~~~~I~-fsG~GEPll~-~~~i~ell~~~~~~-g~~~~~~~i~ 118 (292)
.|.||..... ...+..+.. ++.+++.... ...+...+. |.- .--|-. .+.|.+..+.+-+. + -+.++
T Consensus 45 GCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~-~TNTyApvevLre~ye~aL~~~~----VVGLs 119 (312)
T COG1242 45 GCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRGKYIAYFQA-YTNTYAPVEVLREMYEQALSEAG----VVGLS 119 (312)
T ss_pred ceeeecCCCCCccccCcccCHHHHHHHHHHHHHHhhcCCcEEEEEec-cccccCcHHHHHHHHHHHhCcCC----eeEEe
Confidence 5899966322 223344443 3333343222 222233444 444 322222 45677777776655 3 14556
Q ss_pred EEcCCc-hhh-HHHHhhhC-CCceEE--EEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEE-eCCC
Q 022752 119 VSTVGI-VHA-INKFHSDL-PGLNLA--VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM-LDGV 192 (292)
Q Consensus 119 l~TNG~-~~~-~~~l~~~~-~~~~l~--iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl-~~g~ 192 (292)
|.|--- +++ ...++++. ....+. +.+.+.++++-+.| +++.++....+++++ +++.|++|-.++++ +||
T Consensus 120 IgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~i---NRgHd~~~y~dav~r-~rkrgIkvc~HiI~GLPg- 194 (312)
T COG1242 120 IGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRI---NRGHDFACYVDAVKR-LRKRGIKVCTHLINGLPG- 194 (312)
T ss_pred ecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHH---hcccchHHHHHHHHH-HHHcCCeEEEEEeeCCCC-
Confidence 655532 222 33444332 223443 56688888888887 456789999999955 66778988877766 676
Q ss_pred CChHHHHHHHHHHHhhCCcE-EEEEecCCCC--------CCCCcCCCcHHHH-HHHHHHHHhcCCeEEEeec
Q 022752 193 NDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--------SVSQFRTSSDDKV-SSFQKILRGSYNIRTTVRK 254 (292)
Q Consensus 193 nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~--------~~~~~~~~~~e~l-~~~~~~l~~~~g~~v~ir~ 254 (292)
++.++..+.++.+..+++. |.+.|.+-.. ....+...+.+++ +.+.+.|+ ...-++.+..
T Consensus 195 -E~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le-~lpp~vviHR 264 (312)
T COG1242 195 -ETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLE-HLPPEVVIHR 264 (312)
T ss_pred -CCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceeccHHHHHHHHHHHHH-hCCcceEEEE
Confidence 4667888888999998887 7777765332 1334556676664 44556666 4444454443
No 158
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=97.23 E-value=0.051 Score=51.18 Aligned_cols=167 Identities=17% Similarity=0.163 Sum_probs=99.1
Q ss_pred ceEEEEEcCCCCCcC----CcCcCCCCCCCcCCCCHHHHHHHHHHhhcc----CC----cceEEEecC---C-ccccCHH
Q 022752 33 RSTLCISSQVGCKMG----CNFCATGTMGFKSNLSSGEIVEQLVHASRL----SN----IRNVVFMGM---G-EPLNNYA 96 (292)
Q Consensus 33 r~~l~is~t~gCNl~----C~yC~~~~~~~~~~~~~eei~~~i~~~~~~----~~----~~~I~fsG~---G-EPll~~~ 96 (292)
-+..-|.+.+||+.+ |+||-....+.....+++++++++....+. .+ .+.+.+.|. | =|--|++
T Consensus 182 ~vi~EiETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPe 261 (560)
T COG1031 182 YVICEIETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPE 261 (560)
T ss_pred eEEEEEeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCHH
Confidence 467778889999998 999988755556678899999999875331 11 122332221 4 2444688
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCC---ch---hh-HHHHhhh----CCCceE-EEEecCCChHHHhhhcCcccCccH
Q 022752 97 ALVEAVRIMTGLPFQVSPKRITVSTVG---IV---HA-INKFHSD----LPGLNL-AVSLHAPVQDVRCQIMPAARAFPL 164 (292)
Q Consensus 97 ~i~ell~~~~~~g~~~~~~~i~l~TNG---~~---~~-~~~l~~~----~~~~~l-~iSld~~~~~~~~~i~~~~~~~~~ 164 (292)
.+.++.+-+++.-.+++..++ -|. ++ ++ -.++++. +..=++ .+.+++.++...+.- +-..+-
T Consensus 262 alekL~~Gir~~AP~l~tLHi---DNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~N---nL~~sp 335 (560)
T COG1031 262 ALEKLFRGIRNVAPNLKTLHI---DNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKN---NLNASP 335 (560)
T ss_pred HHHHHHHHHHhhCCCCeeeee---cCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhc---cccCCH
Confidence 899999999887322222222 232 22 21 1222222 211234 489999999886643 345788
Q ss_pred HHHHHHHHHHHHhhCC-------e---EEEEEEE-eCCCCChHHHHHHHHHHHhh
Q 022752 165 EKLMNALKEYQKNSQQ-------K---IFIEYIM-LDGVNDEEQHAHQLGKLLET 208 (292)
Q Consensus 165 ~~vi~~l~~~~~~~~~-------~---v~i~~vl-~~g~nd~~~~l~~l~~~l~~ 208 (292)
|++++++ +..++.|. + --+|++. ++|. +.+..+-=.+||++
T Consensus 336 EEvl~AV-~ivn~vG~~rg~nGlP~lLPGINfv~GL~GE--tkeT~~ln~efL~~ 387 (560)
T COG1031 336 EEVLEAV-EIVNEVGGGRGYNGLPYLLPGINFVFGLPGE--TKETYELNYEFLKE 387 (560)
T ss_pred HHHHHHH-HHHHHhcCccCcCCCccccccceeEecCCCc--cHHHHHhhHHHHHH
Confidence 9999999 56666543 1 2345544 4553 34444444455554
No 159
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=97.12 E-value=0.023 Score=50.66 Aligned_cols=220 Identities=12% Similarity=0.185 Sum_probs=106.7
Q ss_pred cCCCCCcCCcCcCCC-CCCCc-CCCCHHHHHHHHHHhhccCCcceEEEecCC-----ccccCHHHHHHHHHHHhCC-CCC
Q 022752 40 SQVGCKMGCNFCATG-TMGFK-SNLSSGEIVEQLVHASRLSNIRNVVFMGMG-----EPLNNYAALVEAVRIMTGL-PFQ 111 (292)
Q Consensus 40 ~t~gCNl~C~yC~~~-~~~~~-~~~~~eei~~~i~~~~~~~~~~~I~fsG~G-----EPll~~~~i~ell~~~~~~-g~~ 111 (292)
.|+.|=+.|.||-|. ..... ...+++|++...++..+..-++++.+|. | +=+| +.+++.++.++=. +|+
T Consensus 60 lTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSS-Gvi~~~DyTm--E~mi~var~LRle~~f~ 136 (404)
T COG4277 60 LTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSS-GVIKNPDYTM--EEMIEVARILRLEHKFR 136 (404)
T ss_pred HhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheecc-ccccCcchHH--HHHHHHHHHHhhccccC
Confidence 358899999999984 33333 4689999999988754323477888887 6 2222 4455555555422 221
Q ss_pred CCCCeEEEEcCCchhhHHHHhhhCCC-ceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhC---------Ce
Q 022752 112 VSPKRITVSTVGIVHAINKFHSDLPG-LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ---------QK 181 (292)
Q Consensus 112 ~~~~~i~l~TNG~~~~~~~l~~~~~~-~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~---------~~ 181 (292)
.-++..+..-....-+++ ++.. ..+.|-|+-+.+.--+.+.+.....+..+.+..++....++. ..
T Consensus 137 -GYIHlK~IPgas~~li~e---aglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~ 212 (404)
T COG4277 137 -GYIHLKIIPGASPDLIKE---AGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPE 212 (404)
T ss_pred -cEEEEEecCCCCHHHHHH---HhhhhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccCcc
Confidence 013444443332211222 2222 235555555555555555433222222222333322111111 00
Q ss_pred -----EEEEEEEeCCCCChHHHHHHHHHHHh-hCCcE-EEEEecCCCCCCC---CcCCC-cHH-HHHHHHHHHHhcCCeE
Q 022752 182 -----IFIEYIMLDGVNDEEQHAHQLGKLLE-TFQVV-VNLIPFNPIGSVS---QFRTS-SDD-KVSSFQKILRGSYNIR 249 (292)
Q Consensus 182 -----v~i~~vl~~g~nd~~~~l~~l~~~l~-~~~~~-v~l~p~~p~~~~~---~~~~~-~~e-~l~~~~~~l~~~~g~~ 249 (292)
-.-+ +++.-..++..++.....+|- ..+.. |....|.|..... ..++| -.| ++-.+-+.++ .||+.
T Consensus 213 fapaGQSTQ-mivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp~~~pplmRehRLYQADwLlr-fYgF~ 290 (404)
T COG4277 213 FAPAGQSTQ-MIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLPDDKPPLMREHRLYQADWLLR-FYGFS 290 (404)
T ss_pred ccCCCCceE-EEEecCCCchHHHHHHHHHHhhccceeEEEeecccccCCCCCCcccCCchhHHHHHHHHHHHHH-HhCCC
Confidence 0111 222222334455555544444 34544 7777888874111 11222 222 2333445555 89986
Q ss_pred E-Eeeccc----cccccccccccc
Q 022752 250 T-TVRKQM----GQDISGACGQLV 268 (292)
Q Consensus 250 v-~ir~~~----g~~~~~~c~~~~ 268 (292)
. .+.... ..++.+.|.+.+
T Consensus 291 ~~Ei~~~g~~~ld~~lDPK~~wAl 314 (404)
T COG4277 291 ADEILASGGDFLDPDLDPKTAWAL 314 (404)
T ss_pred HHHHHhcCCCccCCCCChhhHHHH
Confidence 4 344332 335678898884
No 160
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=96.28 E-value=0.022 Score=49.56 Aligned_cols=159 Identities=15% Similarity=0.303 Sum_probs=87.5
Q ss_pred eEEEEEcCCCCCcCCcCcCCC-CCCC----cCCCCHHHHHHHHHHhhccCCcceEEEe-cC----CccccCHHHHHHHHH
Q 022752 34 STLCISSQVGCKMGCNFCATG-TMGF----KSNLSSGEIVEQLVHASRLSNIRNVVFM-GM----GEPLNNYAALVEAVR 103 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~-~~~~----~~~~~~eei~~~i~~~~~~~~~~~I~fs-G~----GEPll~~~~i~ell~ 103 (292)
..+-| -+.||.-+|.||... .+.. ..-|..++++++..++++. +-..+..- .| |--.. ++.|.|+++
T Consensus 85 TLlsI-KtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~-GSTRFCmGaAWRD~~GRk~~-fk~IlE~ik 161 (380)
T KOG2900|consen 85 TLLSI-KTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRN-GSTRFCMGAAWRDMKGRKSA-FKRILEMIK 161 (380)
T ss_pred EEEEe-ecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhc-CCceeecchhhhhhccchhH-HHHHHHHHH
Confidence 34444 358999999999774 2222 2457788888888877653 22222111 11 22222 567888888
Q ss_pred HHhCCCCCCCCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe
Q 022752 104 IMTGLPFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181 (292)
Q Consensus 104 ~~~~~g~~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~ 181 (292)
.++..| +.+++ |=|.... .++|.++++ ....=.+|.. -+.|.++. ...++++-++.+ +.+++.|++
T Consensus 162 evr~Mg-----mEvCv-TLGMv~~qQAkeLKdAGL-TAYNHNlDTS-REyYskvI---tTRtYDdRL~Ti-~nvr~aGik 229 (380)
T KOG2900|consen 162 EVRDMG-----MEVCV-TLGMVDQQQAKELKDAGL-TAYNHNLDTS-REYYSKVI---TTRTYDDRLQTI-KNVREAGIK 229 (380)
T ss_pred HHHcCC-----ceeee-eeccccHHHHHHHHhccc-eecccCccch-hhhhcccc---eecchHHHHHHH-HHHHHhcce
Confidence 888887 56665 4565533 455555542 1111223322 23444332 335788888888 456677765
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHHHhhC
Q 022752 182 IFIEYIMLDGVNDEEQHAHQLGKLLETF 209 (292)
Q Consensus 182 v~i~~vl~~g~nd~~~~l~~l~~~l~~~ 209 (292)
+----++ |+.+.+++-..++..|+.+
T Consensus 230 vCsGGIl--GLGE~e~DriGlihtLatm 255 (380)
T KOG2900|consen 230 VCSGGIL--GLGESEDDRIGLIHTLATM 255 (380)
T ss_pred ecccccc--cccccccceeeeeeeeccC
Confidence 5322222 3445555544555555544
No 161
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=95.57 E-value=0.37 Score=44.91 Aligned_cols=76 Identities=21% Similarity=0.439 Sum_probs=52.8
Q ss_pred EEEEeeecCCCCCCCCCC-CCCCCceEEEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEec
Q 022752 10 EAVIMRYDSSLGKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMG 87 (292)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~-~~~~~r~~l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG 87 (292)
=-++.-.+++|.-+ -| +.-....+.|+|+..||+.=|.||-.+.. +..+..+.+-+++++.+... .+++.|++-|
T Consensus 197 in~~Lsldetyadv--~pvr~~~~s~tAFvSiMRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~-qG~KeVTLLG 273 (552)
T KOG2492|consen 197 INVLLSLDETYADV--QPVRVSSSSTTAFVSIMRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAE-QGVKEVTLLG 273 (552)
T ss_pred eeEEEeccchhccc--ceeeccCccchhHHHHHhccccccceEEEeccCCcccCCchHHHHHHHHHHhh-cCceeeeeec
Confidence 34566666765432 23 23346678899999999999999988643 33456677888888877554 4778888887
Q ss_pred C
Q 022752 88 M 88 (292)
Q Consensus 88 ~ 88 (292)
.
T Consensus 274 Q 274 (552)
T KOG2492|consen 274 Q 274 (552)
T ss_pred c
Confidence 4
No 162
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=95.11 E-value=0.8 Score=42.47 Aligned_cols=179 Identities=15% Similarity=0.183 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCCC-cCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHH-----HHHHHHHHhC
Q 022752 34 STLCISSQVGCKMGCNFCATGTMGF-KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAA-----LVEAVRIMTG 107 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~~-~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~-----i~ell~~~~~ 107 (292)
+.=.++...||--.|.||...+... -...+.+++++.+...... ++..|-++. |=+-.+.+ +..++..+.+
T Consensus 187 lieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~e-gv~eIwlts--edTgaygrdig~slp~ll~klv~ 263 (547)
T KOG4355|consen 187 LIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEE-GVCEIWLTS--EDTGAYGRDIGKSLPKLLWKLVE 263 (547)
T ss_pred ceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhc-CcEEEEecc--cccchhhhhhhhhhHHHHHHHHH
Confidence 3334444589999999998865432 2456788888888765432 566777665 33332221 2233333322
Q ss_pred CCCCCCCCeEEEEcCC-chhh-HHHHhhh--CCCc-e-EEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe
Q 022752 108 LPFQVSPKRITVSTVG-IVHA-INKFHSD--LPGL-N-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 181 (292)
Q Consensus 108 ~g~~~~~~~i~l~TNG-~~~~-~~~l~~~--~~~~-~-l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~ 181 (292)
. +.-+-+...=.||- +..+ +.+.+.. ++.+ . +.+.+.+.++.......+-.-...++.+.+.+.+.+ -|
T Consensus 264 ~-iPe~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterV--Pg-- 338 (547)
T KOG4355|consen 264 V-IPESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERV--PG-- 338 (547)
T ss_pred h-cchhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhC--CC--
Confidence 2 00000111113454 2222 2222222 2222 1 235556666665443321111235666666664432 23
Q ss_pred EEEEEEE---eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 182 IFIEYIM---LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 182 v~i~~vl---~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
+.|.+-+ .|+ ++++++++..++++++.+. +.+-+|+|..
T Consensus 339 i~IATDiIcgFPt--ETdeDFeeTmeLv~kYKFPslfInQfyPRp 381 (547)
T KOG4355|consen 339 ITIATDIICGFPT--ETDEDFEETMELVRKYKFPSLFINQFYPRP 381 (547)
T ss_pred cEEeeeeeecCCC--CchHHHHHHHHHHHHccCchhhhhhcCCCC
Confidence 4444433 344 4668999999999998876 7777888763
No 163
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=87.25 E-value=6.3 Score=36.38 Aligned_cols=140 Identities=15% Similarity=0.207 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCC-chhh-------------------HHHHhhhCCCceEEEEecCCChHHHhh
Q 022752 95 YAALVEAVRIMTGLPFQVSPKRITVSTVG-IVHA-------------------INKFHSDLPGLNLAVSLHAPVQDVRCQ 154 (292)
Q Consensus 95 ~~~i~ell~~~~~~g~~~~~~~i~l~TNG-~~~~-------------------~~~l~~~~~~~~l~iSld~~~~~~~~~ 154 (292)
.+.+.++++.++++| ..+.|-.|+ ++.. ..++++.....++.||+++.+...
T Consensus 117 ~~~~~~vv~~ake~~-----ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviSlKsSdv~~--- 188 (359)
T PF04551_consen 117 REKVKEVVEAAKERG-----IPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVISLKSSDVPE--- 188 (359)
T ss_dssp HHHHHHHHHHHHHHT------EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEEEBSSHHH---
T ss_pred HHHHHHHHHHHHHCC-----CCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChHH---
Confidence 678999999999998 567777774 4421 012333343456889998876432
Q ss_pred hcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCC--hHHHHHHHHHHHhh-CCcEEEEEecCCCCCCCCcCCCc
Q 022752 155 IMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND--EEQHAHQLGKLLET-FQVVVNLIPFNPIGSVSQFRTSS 231 (292)
Q Consensus 155 i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd--~~~~l~~l~~~l~~-~~~~v~l~p~~p~~~~~~~~~~~ 231 (292)
.+++-+.++++..-++++-++= .|... .......+..+|.+ +|--+.+. +. ..+
T Consensus 189 ------------~i~ayr~la~~~dyPLHLGvTE-AG~~~~g~IkSsigiG~LL~~GIGDTIRVS-Lt---------~~p 245 (359)
T PF04551_consen 189 ------------TIEAYRLLAERMDYPLHLGVTE-AGTGEDGTIKSSIGIGALLLDGIGDTIRVS-LT---------GDP 245 (359)
T ss_dssp ------------HHHHHHHHHHH--S-EEEEBSS-EESCHHHHHHHHHHHHHHHHTT--SEEEE--EC---------SSC
T ss_pred ------------HHHHHHHHHHhcCCCeEEeecC-CCCcccchhHHHHHHHHHHHcCCCCEEEEE-CC---------CCc
Confidence 2334344555556666654431 12111 12233344444443 34333331 01 112
Q ss_pred HHHHHHHHHHHHhcCCeEEEeeccccccc--ccccccccccC
Q 022752 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDI--SGACGQLVVNL 271 (292)
Q Consensus 232 ~e~l~~~~~~l~~~~g~~v~ir~~~g~~~--~~~c~~~~~~~ 271 (292)
.+++...+++|+ ..|+ |. .|.++ ||+|||..+..
T Consensus 246 ~~EV~va~~IL~-al~l----R~-~g~~~ISCPtCGRt~~Dl 281 (359)
T PF04551_consen 246 VEEVKVAFEILQ-ALGL----RK-RGPEIISCPTCGRTEFDL 281 (359)
T ss_dssp CCHHHHHHHHHH-HTTS----S--SS-EEEE----TT--SHH
T ss_pred hHHHHHHHHHHH-HhCc----Cc-CCceeeeCCCCCCccchH
Confidence 236777888888 6774 33 25554 89999986543
No 164
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=86.35 E-value=27 Score=32.13 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=77.9
Q ss_pred CcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC-chhh--------------------HHHHhhhCCC
Q 022752 79 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG-IVHA--------------------INKFHSDLPG 137 (292)
Q Consensus 79 ~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG-~~~~--------------------~~~l~~~~~~ 137 (292)
+++.|-+.= |.== ..+.+.++++.+++++ ..+.|-.|. ++.. ..++++.+..
T Consensus 93 g~dkiRINP-GNig-~~e~v~~vv~~ak~~~-----ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F 165 (346)
T TIGR00612 93 GVAKVRINP-GNIG-FRERVRDVVEKARDHG-----KAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGF 165 (346)
T ss_pred ccCeEEECC-CCCC-CHHHHHHHHHHHHHCC-----CCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344555543 3211 2578899999999987 556666673 4321 0122333333
Q ss_pred ceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEe-CCCCChHHHHHHHHHHHhh-CCcEEEE
Q 022752 138 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIML-DGVNDEEQHAHQLGKLLET-FQVVVNL 215 (292)
Q Consensus 138 ~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~-~g~nd~~~~l~~l~~~l~~-~~~~v~l 215 (292)
.++.||+++.+.. ..+++-+.++++..-++++=++=. .+..-.......+.-+|.+ +|--+.+
T Consensus 166 ~diviS~KsSdv~---------------~~i~ayr~la~~~dyPLHlGVTEAG~~~~G~IKSaigig~LL~~GIGDTIRV 230 (346)
T TIGR00612 166 RNVVLSMKASDVA---------------ETVAAYRLLAERSDYPLHLGVTEAGMGVKGIVKSSAGIGILLARGIGDTIRV 230 (346)
T ss_pred CcEEEEEEcCCHH---------------HHHHHHHHHHhhCCCCceeccccCCCCCCchhHHHHHHHHHHhhCCCCeEEE
Confidence 4677888776532 223333334444444444433211 0111123334445555443 3322222
Q ss_pred EecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEEeeccccccc--ccccccccccCc
Q 022752 216 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI--SGACGQLVVNLP 272 (292)
Q Consensus 216 ~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ir~~~g~~~--~~~c~~~~~~~~ 272 (292)
. +...+.+++...+++|+ ..|+ |.. |-++ |++|||..+...
T Consensus 231 S----------LT~dP~~EV~va~~IL~-slgl----r~~-g~~iiSCPtCGR~~~dl~ 273 (346)
T TIGR00612 231 S----------LTDDPTHEVPVAFEILQ-SLGL----RAR-GVEIVACPSCGRTGFDVE 273 (346)
T ss_pred E----------CCCCcHHHHHHHHHHHH-HcCC----CcC-CCeEEECCCCCCcCCCHH
Confidence 1 11234677888888888 5663 332 3343 788888865543
No 165
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=78.96 E-value=53 Score=30.21 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHHhcCCeEEEeeccccccc--ccccccccccC
Q 022752 231 SDDKVSSFQKILRGSYNIRTTVRKQMGQDI--SGACGQLVVNL 271 (292)
Q Consensus 231 ~~e~l~~~~~~l~~~~g~~v~ir~~~g~~~--~~~c~~~~~~~ 271 (292)
+.+++.-.+++|+ ..|+. .. |-.+ |++|||..+..
T Consensus 238 P~~EV~V~~eILq-slglR----~~-~v~~iaCP~CGR~~~dv 274 (361)
T COG0821 238 PVEEVKVAQEILQ-SLGLR----SR-GVEVIACPTCGRTEFDV 274 (361)
T ss_pred chhhhHHHHHHHH-HhCcc----cc-CceEEECCCCCceeehH
Confidence 3567777777777 56643 21 2222 68888876543
No 166
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=76.80 E-value=66 Score=30.13 Aligned_cols=177 Identities=12% Similarity=0.102 Sum_probs=94.0
Q ss_pred cCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC--chhhHHHHhhhCC
Q 022752 59 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG--IVHAINKFHSDLP 136 (292)
Q Consensus 59 ~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG--~~~~~~~l~~~~~ 136 (292)
...++.++.++.+....+ .+++.|-+ |-|.+... =.+.++.+.+.+. ...+.+-+ ....+....+.+
T Consensus 20 ~~~~s~e~k~~ia~~L~~-~GV~~IE~---G~p~~~~~-~~e~i~~i~~~~~-----~~~i~~~~r~~~~di~~a~~~g- 88 (378)
T PRK11858 20 GVVFTNEEKLAIARMLDE-IGVDQIEA---GFPAVSED-EKEAIKAIAKLGL-----NASILALNRAVKSDIDASIDCG- 88 (378)
T ss_pred CCCCCHHHHHHHHHHHHH-hCCCEEEE---eCCCcChH-HHHHHHHHHhcCC-----CeEEEEEcccCHHHHHHHHhCC-
Confidence 346778877766665544 37777764 46888744 3467777776652 23333332 122344444443
Q ss_pred CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEE
Q 022752 137 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNL 215 (292)
Q Consensus 137 ~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l 215 (292)
...+.+.+...+.+....+. ......++.+.+.+ +++++.|..+.+... ...-.+.+.+.++++.+.+.|+. +.+
T Consensus 89 ~~~i~i~~~~Sd~h~~~~~~-~s~~~~l~~~~~~v-~~a~~~G~~v~~~~e--d~~r~~~~~l~~~~~~~~~~Ga~~I~l 164 (378)
T PRK11858 89 VDAVHIFIATSDIHIKHKLK-KTREEVLERMVEAV-EYAKDHGLYVSFSAE--DASRTDLDFLIEFAKAAEEAGADRVRF 164 (378)
T ss_pred cCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHH-HHHHHCCCeEEEEec--cCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 22344566544444444442 22234455555566 566777877666533 22223467888888888888876 544
Q ss_pred EecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeE--EEeeccccc
Q 022752 216 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR--TTVRKQMGQ 258 (292)
Q Consensus 216 ~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~--v~ir~~~g~ 258 (292)
-.-. . ...++++.++.+.+.+..+++ +...+..|.
T Consensus 165 ~DT~------G--~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~Gl 201 (378)
T PRK11858 165 CDTV------G--ILDPFTMYELVKELVEAVDIPIEVHCHNDFGM 201 (378)
T ss_pred eccC------C--CCCHHHHHHHHHHHHHhcCCeEEEEecCCcCH
Confidence 3111 1 234556666555555333433 334444443
No 167
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=71.69 E-value=86 Score=29.09 Aligned_cols=66 Identities=17% Similarity=0.277 Sum_probs=43.4
Q ss_pred eEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEE-EeCCCCChHHHHHHHHHHHhhC
Q 022752 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI-MLDGVNDEEQHAHQLGKLLETF 209 (292)
Q Consensus 139 ~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~v-l~~g~nd~~~~l~~l~~~l~~~ 209 (292)
.+-|.+.+.-++..+.- +++.++..+.+.+ .+++++|-++....+ -+|++ .-+.+++++.+++..-
T Consensus 249 RlEiGVQS~YEDVARDT---NRGHTV~aVce~F-~laKDaG~KvV~HMMPdLPNV-g~eRDieqF~E~FenP 315 (554)
T KOG2535|consen 249 RLEIGVQSVYEDVARDT---NRGHTVKAVCESF-HLAKDAGFKVVAHMMPDLPNV-GMERDIEQFKEYFENP 315 (554)
T ss_pred eEEeccchhHHHhhhcc---cCCccHHHHHHHh-hhhhccCceeehhhCCCCCCC-chhhhHHHHHHHhcCc
Confidence 45566666556655543 5667899999999 778888877665432 23443 3456788888887753
No 168
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=70.86 E-value=90 Score=29.00 Aligned_cols=39 Identities=10% Similarity=0.013 Sum_probs=26.3
Q ss_pred CcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 022752 79 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123 (292)
Q Consensus 79 ~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG 123 (292)
+++.|-+.= |.=--..+.+.++++.+++++ ..+.|-.|.
T Consensus 101 G~~~iRINP-GNig~~~~~v~~vv~~ak~~~-----ipIRIGvN~ 139 (360)
T PRK00366 101 GADALRINP-GNIGKRDERVREVVEAAKDYG-----IPIRIGVNA 139 (360)
T ss_pred CCCEEEECC-CCCCchHHHHHHHHHHHHHCC-----CCEEEecCC
Confidence 456666655 533222467899999999987 567777774
No 169
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=70.63 E-value=92 Score=28.99 Aligned_cols=178 Identities=15% Similarity=0.133 Sum_probs=96.2
Q ss_pred cCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCc
Q 022752 59 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138 (292)
Q Consensus 59 ~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~ 138 (292)
...++.++.++.+....+ .+++.|-+ |-|....+ -.+.++.+.+.+.. ..+..-+......++...+.+ ..
T Consensus 16 ~~~~s~~~k~~ia~~L~~-~Gv~~IEv---G~p~~~~~-~~e~i~~i~~~~~~---~~v~~~~r~~~~di~~a~~~g-~~ 86 (363)
T TIGR02090 16 GVSLTVEQKVEIARKLDE-LGVDVIEA---GFPIASEG-EFEAIKKISQEGLN---AEICSLARALKKDIDKAIDCG-VD 86 (363)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEE---eCCCCChH-HHHHHHHHHhcCCC---cEEEEEcccCHHHHHHHHHcC-cC
Confidence 356788887777666544 47777764 45666533 35777777766421 333333333333344545543 22
Q ss_pred eEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEe
Q 022752 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIP 217 (292)
Q Consensus 139 ~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p 217 (292)
.+.+.+.+.+......+. ......++.+.+.+ +++++.|..+.+...-. .-.+.+.+.++++.+.+.|+. +.+-.
T Consensus 87 ~i~i~~~~Sd~~~~~~~~-~~~~~~~~~~~~~i-~~ak~~G~~v~~~~eda--~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (363)
T TIGR02090 87 SIHTFIATSPIHLKYKLK-KSRDEVLEKAVEAV-EYAKEHGLIVEFSAEDA--TRTDIDFLIKVFKRAEEAGADRINIAD 162 (363)
T ss_pred EEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHH-HHHHHcCCEEEEEEeec--CCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 344555443333333332 12233466667777 56777787776654322 233567888888888888876 55532
Q ss_pred cCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEE--Eeecccc
Q 022752 218 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT--TVRKQMG 257 (292)
Q Consensus 218 ~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v--~ir~~~g 257 (292)
- .| ...++++.++.+.+++..++++ ...+..|
T Consensus 163 T--~G------~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~G 196 (363)
T TIGR02090 163 T--VG------VLTPQKMEELIKKLKENVKLPISVHCHNDFG 196 (363)
T ss_pred C--CC------ccCHHHHHHHHHHHhcccCceEEEEecCCCC
Confidence 1 11 2345566666666653344333 3344444
No 170
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=68.75 E-value=59 Score=30.70 Aligned_cols=49 Identities=8% Similarity=0.205 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG 123 (292)
.++++++++.+.++.+ .+++.+++.- | ++ .+.++.+++.+ +.+.|.+-|
T Consensus 136 ~mt~d~~~~~ie~qa~-dGVDfmTiH~-G---i~----~~~~~~~~~~~-----R~~giVSRG 184 (423)
T TIGR00190 136 DMDEDDMFRAIEKQAK-DGVDFMTIHA-G---VL----LEYVERLKRSG-----RITGIVSRG 184 (423)
T ss_pred hCCHHHHHHHHHHHHH-hCCCEEEEcc-c---hh----HHHHHHHHhCC-----CccCeecCc
Confidence 4788999999988765 3889998887 6 33 35666676654 456666666
No 171
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=67.65 E-value=89 Score=27.67 Aligned_cols=178 Identities=8% Similarity=0.041 Sum_probs=91.5
Q ss_pred cCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCc
Q 022752 59 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138 (292)
Q Consensus 59 ~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~ 138 (292)
+..++.++.++.+....+ .+++.|-+.. |-.. +...+.++.+.+.+.. ..+..-.......+....+.+. .
T Consensus 16 ~~~~s~~~k~~i~~~L~~-~Gv~~IEvG~---P~~~-~~~~~~~~~l~~~~~~---~~v~~~~r~~~~di~~a~~~g~-~ 86 (262)
T cd07948 16 NAFFDTEDKIEIAKALDA-FGVDYIELTS---PAAS-PQSRADCEAIAKLGLK---AKILTHIRCHMDDARIAVETGV-D 86 (262)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEEEC---CCCC-HHHHHHHHHHHhCCCC---CcEEEEecCCHHHHHHHHHcCc-C
Confidence 356788887777766544 4787777654 6666 3455666666654421 2222222222333444444431 2
Q ss_pred eEEEEecCCChHH-HhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEE
Q 022752 139 NLAVSLHAPVQDV-RCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLI 216 (292)
Q Consensus 139 ~l~iSld~~~~~~-~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~ 216 (292)
.+.+.+-. ++.+ .... +.+....++.+.+.+ +++++.|..+.+...-.-+ ...+.+.++++.+.+.++. +.+-
T Consensus 87 ~i~i~~~~-S~~~~~~~~-~~~~~e~~~~~~~~i-~~a~~~G~~v~~~~eda~r--~~~~~l~~~~~~~~~~g~~~i~l~ 161 (262)
T cd07948 87 GVDLVFGT-SPFLREASH-GKSITEIIESAVEVI-EFVKSKGIEVRFSSEDSFR--SDLVDLLRVYRAVDKLGVNRVGIA 161 (262)
T ss_pred EEEEEEec-CHHHHHHHh-CCCHHHHHHHHHHHH-HHHHHCCCeEEEEEEeeCC--CCHHHHHHHHHHHHHcCCCEEEEC
Confidence 34444422 3333 2222 111223344455555 4566667766665543322 3467788899988888776 5442
Q ss_pred ecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEE--Eeeccccc
Q 022752 217 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT--TVRKQMGQ 258 (292)
Q Consensus 217 p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v--~ir~~~g~ 258 (292)
.- .-...++++..+.+.+++.+++++ ......|.
T Consensus 162 Dt--------~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gl 197 (262)
T cd07948 162 DT--------VGIATPRQVYELVRTLRGVVSCDIEFHGHNDTGC 197 (262)
T ss_pred Cc--------CCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCh
Confidence 11 112355566666666664445443 34444443
No 172
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=67.16 E-value=3.5 Score=33.95 Aligned_cols=68 Identities=22% Similarity=0.411 Sum_probs=41.2
Q ss_pred ecCCCCCCCCCCCCCCCc--eEEEEEcCCCCCcCCcCcCCCCCC------------------CcCCCCHHHHHHHHHHhh
Q 022752 16 YDSSLGKYNGKPRPGGPR--STLCISSQVGCKMGCNFCATGTMG------------------FKSNLSSGEIVEQLVHAS 75 (292)
Q Consensus 16 ~~~~~~~~~g~~~~~~~r--~~l~is~t~gCNl~C~yC~~~~~~------------------~~~~~~~eei~~~i~~~~ 75 (292)
|-.|||.|=-.|+..|.. ..-|| |++.|.-|.....+ +.++|.++++++.+.++.
T Consensus 96 YekRfgpYf~~PvVAGl~~~~kPfI-----c~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFetisQa~ 170 (204)
T KOG0180|consen 96 YEKRFGPYFTEPVVAGLDDDNKPFI-----CGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFETISQAL 170 (204)
T ss_pred HHhhcCCcccceeEeccCCCCCeeE-----eecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 345666655555433322 22355 99999999773211 346788999988887643
Q ss_pred ccCCcceEEEecCC
Q 022752 76 RLSNIRNVVFMGMG 89 (292)
Q Consensus 76 ~~~~~~~I~fsG~G 89 (292)
-+ .++.=.+||||
T Consensus 171 Ln-a~DRDalSGwG 183 (204)
T KOG0180|consen 171 LN-AVDRDALSGWG 183 (204)
T ss_pred Hh-HhhhhhhccCC
Confidence 21 24555677777
No 173
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=67.15 E-value=84 Score=27.22 Aligned_cols=96 Identities=19% Similarity=0.116 Sum_probs=57.7
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCc--
Q 022752 81 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA-- 158 (292)
Q Consensus 81 ~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~-- 158 (292)
-.|..+|+|=|... -...|+++.-.-+ ..+.+-|.|.+.. ....-|++|...+.+++........
T Consensus 58 iSvmg~GmGipS~s-IY~~ELi~~y~Vk------~iIRvGt~Gal~~------~v~l~DvVia~~A~tds~~~~~~f~~~ 124 (236)
T COG0813 58 ISVMGHGMGIPSIS-IYSRELITDYGVK------KIIRVGTCGALSE------DVKLRDVVIAQGASTDSNVNRIRFKPH 124 (236)
T ss_pred EEEEEecCCCccHH-HHHHHHHHHhCcc------eEEEEEccccccC------CcccceEEEeccccCcchhhhcccCcc
Confidence 47888999988874 4556666654433 4689999997632 2223467777776666544433211
Q ss_pred c--cCccHHHHHHHHHHHHHhhCCeEEEEEEEeC
Q 022752 159 A--RAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 190 (292)
Q Consensus 159 ~--~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~ 190 (292)
+ .-.+++ +++...+.+++.|+.+++-.++..
T Consensus 125 df~~~ad~~-Ll~~a~~~A~e~gi~~hvgnv~ss 157 (236)
T COG0813 125 DFAPIADFE-LLEKAYETAKELGIDTHVGNVFSS 157 (236)
T ss_pred cccccCCHH-HHHHHHHHHHHhCCceeeeeeeee
Confidence 1 112344 445554788888988887444443
No 174
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=66.19 E-value=92 Score=27.32 Aligned_cols=177 Identities=11% Similarity=0.085 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCce
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~ 139 (292)
..++.++..+.+....+ .+++.|-+. =|.+... =.+.++.+.+.+.+ ..+..-.......+....+.+ ...
T Consensus 15 ~~~~~~~k~~i~~~L~~-~Gv~~iE~g---~p~~~~~-~~e~~~~l~~~~~~---~~~~~~~r~~~~~v~~a~~~g-~~~ 85 (259)
T cd07939 15 VAFSREEKLAIARALDE-AGVDEIEVG---IPAMGEE-EREAIRAIVALGLP---ARLIVWCRAVKEDIEAALRCG-VTA 85 (259)
T ss_pred CCCCHHHHHHHHHHHHH-cCCCEEEEe---cCCCCHH-HHHHHHHHHhcCCC---CEEEEeccCCHHHHHHHHhCC-cCE
Confidence 45777777766665544 477777663 2556522 23566777664311 333333222222343434433 223
Q ss_pred EEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEec
Q 022752 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPF 218 (292)
Q Consensus 140 l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~ 218 (292)
+.+.+...+......+. ......++.+.+.+ +++++.|..+.+...-... .+.+.+.++++.+.+.|+. +.+-.
T Consensus 86 i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i-~~a~~~G~~v~~~~~~~~~--~~~~~~~~~~~~~~~~G~~~i~l~D- 160 (259)
T cd07939 86 VHISIPVSDIHLAHKLG-KDRAWVLDQLRRLV-GRAKDRGLFVSVGAEDASR--ADPDFLIEFAEVAQEAGADRLRFAD- 160 (259)
T ss_pred EEEEEecCHHHHHHHhC-CCHHHHHHHHHHHH-HHHHHCCCeEEEeeccCCC--CCHHHHHHHHHHHHHCCCCEEEeCC-
Confidence 44544332333333332 11223345555666 5566778777766554332 3467888888888888876 54421
Q ss_pred CCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEE--Eeecccc
Q 022752 219 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT--TVRKQMG 257 (292)
Q Consensus 219 ~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v--~ir~~~g 257 (292)
.. -...++++..+...+++.+++++ ...+..|
T Consensus 161 -T~------G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~G 194 (259)
T cd07939 161 -TV------GILDPFTTYELIRRLRAATDLPLEFHAHNDLG 194 (259)
T ss_pred -CC------CCCCHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 11 12345666666666654445443 3334444
No 175
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=65.69 E-value=94 Score=27.70 Aligned_cols=163 Identities=12% Similarity=0.067 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHhhccCCcc--eEEEe--cCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc-hhhH-HHH--
Q 022752 60 SNLSSGEIVEQLVHASRLSNIR--NVVFM--GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI-VHAI-NKF-- 131 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~--~I~fs--G~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~-~~~~-~~l-- 131 (292)
-.++++|+++...+..+. |.. ++..- -.|.|++.++...++++.+++.. +.+.+.++|.+. .... .++
T Consensus 21 lP~tpeEia~~A~~c~~A-GAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~---pd~iv~~Ttg~~~~~~~~~R~~~ 96 (272)
T PF05853_consen 21 LPITPEEIAADAVACYEA-GAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAAC---PDLIVQPTTGGGGGPDPEERLAH 96 (272)
T ss_dssp S--SHHHHHHHHHHHHHH-TESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHS---TTSEEEEESSTTTTSGHHHHCTH
T ss_pred CCCCHHHHHHHHHHHHHc-CCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHC---CCeEEEeCCCCCCCCCHHHHHHH
Confidence 357899999998875442 333 44443 12899999999999999999872 247888888873 2221 111
Q ss_pred hhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhC--
Q 022752 132 HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-- 209 (292)
Q Consensus 132 ~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~-- 209 (292)
..........+++-+.+-..... ....+.+.+.+.+ +.+.+.|+...+. +. +..++..+..+++.-
T Consensus 97 v~~~~pd~asl~~gs~n~~~~~~----~~~n~~~~~~~~~-~~~~e~Gi~pe~e--v~-----d~~~l~~~~~l~~~G~l 164 (272)
T PF05853_consen 97 VEAWKPDMASLNPGSMNFGTRDR----VYINTPADARELA-RRMRERGIKPEIE--VF-----DPGHLRNARRLIEKGLL 164 (272)
T ss_dssp HHHH--SEEEEE-S-EEESGGCS----EE---HHHHHHHH-HHHHHTT-EEEEE--ES-----SHHHHHHHHHHHHTTSS
T ss_pred HHhcCCCeEEecccccccccCCc----eecCCHHHHHHHH-HHHHHcCCeEEEE--EE-----cHHHHHHHHHHHHCCCC
Confidence 12111122223332222111111 1123455555555 4556667665554 32 334566666655541
Q ss_pred --CcEEEEEecCCCCCCCCcCCCcHHHHHHHHHHHH
Q 022752 210 --QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 210 --~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~ 243 (292)
...+.++--.+ ... +++.+.+..+.+.+.
T Consensus 165 ~~p~~~~~vlG~~----~g~-~~~~~~l~~~l~~l~ 195 (272)
T PF05853_consen 165 PGPLLVNFVLGVP----GGM-PATPENLLAMLDMLP 195 (272)
T ss_dssp -SSEEEEEEES-T----TS---S-HHHHHHHHHHHH
T ss_pred CCCeEEEEcccCC----CCC-CCCHHHHHHHHHhcC
Confidence 11244432111 122 567777777777666
No 176
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=65.58 E-value=20 Score=31.18 Aligned_cols=48 Identities=31% Similarity=0.446 Sum_probs=40.2
Q ss_pred cCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCC
Q 022752 59 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 109 (292)
Q Consensus 59 ~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g 109 (292)
...++.+|+++.+.++.+. +-+.+-+.. |+|.+ |-.+.|-++.+.+.|
T Consensus 56 Sa~~tLeeIi~~m~~a~~~-Gk~VvRLhS-GDpsi-YgA~~EQm~~L~~~g 103 (254)
T COG2875 56 SASLTLEEIIDLMVDAVRE-GKDVVRLHS-GDPSI-YGALAEQMRELEALG 103 (254)
T ss_pred cCcCCHHHHHHHHHHHHHc-CCeEEEeec-CChhH-HHHHHHHHHHHHHcC
Confidence 3568899999988876542 667888999 99999 588999999999988
No 177
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=65.34 E-value=76 Score=30.11 Aligned_cols=49 Identities=6% Similarity=0.230 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG 123 (292)
.++.+++++.+.++.+ .+++.+++.- | ++ .+.++.+++.+ +.+.|.+-|
T Consensus 139 ~mt~d~~~~~ie~qa~-~GVDfmTiHc-G---i~----~~~~~~~~~~~-----R~~giVSRG 187 (431)
T PRK13352 139 DMTEDDLFDVIEKQAK-DGVDFMTIHC-G---VT----RETLERLKKSG-----RIMGIVSRG 187 (431)
T ss_pred hCCHHHHHHHHHHHHH-hCCCEEEEcc-c---hh----HHHHHHHHhcC-----CccCeecCC
Confidence 5788999999988765 3889998887 6 33 35566666554 455666666
No 178
>PRK01076 L-rhamnose isomerase; Provisional
Probab=64.08 E-value=71 Score=30.19 Aligned_cols=118 Identities=11% Similarity=0.105 Sum_probs=68.3
Q ss_pred CcCCCCHHHHHHHHHHhhcc-CCcceEEEecC----Ccccc----CHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhH
Q 022752 58 FKSNLSSGEIVEQLVHASRL-SNIRNVVFMGM----GEPLN----NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAI 128 (292)
Q Consensus 58 ~~~~~~~eei~~~i~~~~~~-~~~~~I~fsG~----GEPll----~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~ 128 (292)
.+...+++|..+.+..+... .+...|++.-. ||..= .+++....++.+++.|+ .+-+++|-+
T Consensus 66 pG~aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~~~~~~vdrd~~~p~~f~~w~~~Ak~~Gl-----glDfNpn~F---- 136 (419)
T PRK01076 66 PGKARNADELRADLEKALSLIPGKHRLNLHAIYLESDTPVDRDEIEPEHFKNWVEWAKENGL-----GLDFNPTCF---- 136 (419)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCceeeecccccCCCcccccccCcccHHHHHHHHHHcCC-----CcCcCcccC----
Confidence 34678899999888876442 23334443331 22111 24667889999999983 333444422
Q ss_pred HHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCC
Q 022752 129 NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 194 (292)
Q Consensus 129 ~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd 194 (292)
..+.....+||-.+++++|+.+.. .....++-...+.++.|.+..+++-+-.|.||
T Consensus 137 -----sh~~~k~G~SLs~pD~~iR~fwI~-----H~~~c~~I~~~~g~~lGs~~~~niWipDG~kd 192 (419)
T PRK01076 137 -----SHPLSADGFTLSHPDPEIRQFWIE-----HCKASRRISAYFGEELGTPCVMNIWIPDGMKD 192 (419)
T ss_pred -----CCccccCCCcccCCCHHHHHHHHH-----HHHHHHHHHHHHHHHhCCccceeEEeCCCCCC
Confidence 122334446888999999887531 11222233323344677777788887778883
No 179
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=63.14 E-value=59 Score=28.16 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhCCeEEEEEEEeC-CCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCc-HHHHHHHHHH
Q 022752 165 EKLMNALKEYQKNSQQKIFIEYIMLD-GVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSS-DDKVSSFQKI 241 (292)
Q Consensus 165 ~~vi~~l~~~~~~~~~~v~i~~vl~~-g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~-~e~l~~~~~~ 241 (292)
+.+.+++ +.+++.+..+++--++.+ |+....+++..|++.+++.|+. |.+..|.- +++.+|-+ ..-++.+.+.
T Consensus 14 ~~l~~~~-~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~D---GRDt~P~S~~~yl~~l~~~ 89 (223)
T PF06415_consen 14 PVLLEAI-EHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTD---GRDTPPKSALKYLEELEEK 89 (223)
T ss_dssp HHHHHHH-HHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE----SSSS-TTTHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecC---CCCCCcchHHHHHHHHHHH
Confidence 3444555 556667778888777766 5777789999999999999875 77777653 34555444 4557778887
Q ss_pred HH
Q 022752 242 LR 243 (292)
Q Consensus 242 l~ 243 (292)
+.
T Consensus 90 l~ 91 (223)
T PF06415_consen 90 LA 91 (223)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 180
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=61.67 E-value=1.4e+02 Score=27.80 Aligned_cols=180 Identities=9% Similarity=0.096 Sum_probs=92.4
Q ss_pred cCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCc
Q 022752 59 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138 (292)
Q Consensus 59 ~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~ 138 (292)
...++.++.++.+....+ .+++.|-+ |=|.+. +.=.+.++.+.+.+.+ ..+..-.......++...+.+ ..
T Consensus 17 ~~~~s~~~k~~ia~~L~~-~Gv~~IEv---G~p~~~-~~~~e~i~~i~~~~~~---~~i~~~~r~~~~di~~a~~~g-~~ 87 (365)
T TIGR02660 17 GVAFTAAEKLAIARALDE-AGVDELEV---GIPAMG-EEERAVIRAIVALGLP---ARLMAWCRARDADIEAAARCG-VD 87 (365)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEE---eCCCCC-HHHHHHHHHHHHcCCC---cEEEEEcCCCHHHHHHHHcCC-cC
Confidence 355788877766665544 37777666 346666 3234667777665311 233322222233344444433 12
Q ss_pred eEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEe
Q 022752 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIP 217 (292)
Q Consensus 139 ~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p 217 (292)
.+.+.+...+......+. ......++.+.+.+ +++++.|..+.+...- ..-.+.+.+.++++.+.+.|+. +.+-.
T Consensus 88 ~i~i~~~~Sd~~~~~~~~-~s~~e~l~~~~~~i-~~ak~~g~~v~~~~ed--~~r~~~~~l~~~~~~~~~~Ga~~i~l~D 163 (365)
T TIGR02660 88 AVHISIPVSDLQIEAKLR-KDRAWVLERLARLV-SFARDRGLFVSVGGED--ASRADPDFLVELAEVAAEAGADRFRFAD 163 (365)
T ss_pred EEEEEEccCHHHHHHHhC-cCHHHHHHHHHHHH-HHHHhCCCEEEEeecC--CCCCCHHHHHHHHHHHHHcCcCEEEEcc
Confidence 244444333333333332 22233455555666 5677778776655432 2223467788888888887765 44421
Q ss_pred cCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEE--Eeecccccc
Q 022752 218 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT--TVRKQMGQD 259 (292)
Q Consensus 218 ~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v--~ir~~~g~~ 259 (292)
- . + ...++++.++.+.+++..++++ ...+..|..
T Consensus 164 T--~----G--~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA 199 (365)
T TIGR02660 164 T--V----G--ILDPFSTYELVRALRQAVDLPLEMHAHNDLGMA 199 (365)
T ss_pred c--C----C--CCCHHHHHHHHHHHHHhcCCeEEEEecCCCChH
Confidence 1 1 1 2355666666666653444443 344444433
No 181
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=59.91 E-value=1.2e+02 Score=26.50 Aligned_cols=43 Identities=12% Similarity=0.083 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCC
Q 022752 65 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 108 (292)
Q Consensus 65 eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~ 108 (292)
+.+.+.+........--.|++.| -|||+.+..|..+++.+++.
T Consensus 78 dR~~Ev~~~l~~~~~~iIVNvQG-DeP~i~p~~I~~~~~~L~~~ 120 (247)
T COG1212 78 DRLAEVVEKLGLPDDEIIVNVQG-DEPFIEPEVIRAVAENLENS 120 (247)
T ss_pred HHHHHHHHhcCCCcceEEEEccC-CCCCCCHHHHHHHHHHHHhC
Confidence 44454444432211224688999 99999988888888888865
No 182
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=58.59 E-value=1.4e+02 Score=26.72 Aligned_cols=90 Identities=14% Similarity=0.292 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHHhhCC-eEEEEE--EEeCCCCCh---HHHHHHHHHHHhhC--CcEEEEEecCCCC----CCC--CcC
Q 022752 163 PLEKLMNALKEYQKNSQQ-KIFIEY--IMLDGVNDE---EQHAHQLGKLLETF--QVVVNLIPFNPIG----SVS--QFR 228 (292)
Q Consensus 163 ~~~~vi~~l~~~~~~~~~-~v~i~~--vl~~g~nd~---~~~l~~l~~~l~~~--~~~v~l~p~~p~~----~~~--~~~ 228 (292)
+.+++++.++++.+..|. +|..++ +++.+..+- .+.++.|++.|+.. .+.+.++..++.- ... .+.
T Consensus 94 ~~~~~i~~f~~Ls~~iG~~rViWRYDPIil~~~~~~~~h~~~F~~la~~L~g~t~~~viSF~D~Y~k~~~~l~~~~~~~~ 173 (266)
T PF08902_consen 94 PKDERIETFRELSERIGPERVIWRYDPIILTDKYTVDYHLEAFERLAEALAGYTDRCVISFLDLYRKVRRNLARLGFRIR 173 (266)
T ss_pred CHHHHHHHHHHHHHHHCCCcEEEecCCEeECCCCCHHHHHHHHHHHHHHHhccCCEEEEEeeeccHHHHHHHHhhcCCCC
Confidence 456777888777766653 455554 444333332 34555666666643 1336666544321 111 245
Q ss_pred CCcHHHHHHHHHHHH---hcCCeEEEe
Q 022752 229 TSSDDKVSSFQKILR---GSYNIRTTV 252 (292)
Q Consensus 229 ~~~~e~l~~~~~~l~---~~~g~~v~i 252 (292)
.++.+++..+.+.+. +++|+.+..
T Consensus 174 ~~~~~~~~~l~~~l~~ia~~~g~~l~t 200 (266)
T PF08902_consen 174 EPSEEEKRELAKRLAEIAKKYGMTLYT 200 (266)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEe
Confidence 778888777655442 268887643
No 183
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=58.43 E-value=1.4e+02 Score=26.92 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhCC
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL 108 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~~ 108 (292)
++.+.+.+.+..... .++++|.+.|. || |+|..+.-.++++.+.+.
T Consensus 22 vD~~a~~~lv~~li~-~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~ 69 (299)
T COG0329 22 VDEEALRRLVEFLIA-AGVDGLVVLGTTGESPTLTLEERKEVLEAVVEA 69 (299)
T ss_pred cCHHHHHHHHHHHHH-cCCCEEEECCCCccchhcCHHHHHHHHHHHHHH
Confidence 555555555554444 47888887774 55 666666666777777765
No 184
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=57.03 E-value=1.6e+02 Score=27.18 Aligned_cols=144 Identities=15% Similarity=0.154 Sum_probs=73.8
Q ss_pred HHHHHHhhccCCcceEEEecCCcccc----CHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh-------HHHHhhhCC
Q 022752 68 VEQLVHASRLSNIRNVVFMGMGEPLN----NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA-------INKFHSDLP 136 (292)
Q Consensus 68 ~~~i~~~~~~~~~~~I~fsG~GEPll----~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~-------~~~l~~~~~ 136 (292)
..-|+.+.. .|. .-.|++.+.|.- .++.+.++++++++.| +.+.++-|..... ....+.+..
T Consensus 19 ~~Yi~~~~~-~Gf-~~IFtsl~~~~~~~~~~~~~~~ell~~Anklg-----~~vivDvnPsil~~l~~S~~~l~~f~e~G 91 (360)
T COG3589 19 IAYIDRMHK-YGF-KRIFTSLLIPEEDAELYFHRFKELLKEANKLG-----LRVIVDVNPSILKELNISLDNLSRFQELG 91 (360)
T ss_pred HHHHHHHHH-cCc-cceeeecccCCchHHHHHHHHHHHHHHHHhcC-----cEEEEEcCHHHHhhcCCChHHHHHHHHhh
Confidence 444444333 243 334555454443 3667899999999998 7888888875421 011111111
Q ss_pred CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEE
Q 022752 137 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 216 (292)
Q Consensus 137 ~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~ 216 (292)
...+.+ +-+.+.+.+.+-. +.+.++.+|.- +.++ .+..+..+...+.....-.
T Consensus 92 ~~glRl----------------D~gfS~eei~~ms-----~~~lkieLN~S-----~it~-~l~~l~~~~an~~nl~~cH 144 (360)
T COG3589 92 VDGLRL----------------DYGFSGEEIAEMS-----KNPLKIELNAS-----TITE-LLDSLLAYKANLENLEGCH 144 (360)
T ss_pred hhheee----------------cccCCHHHHHHHh-----cCCeEEEEchh-----hhHH-HHHHHHHhccchhhhhhcc
Confidence 112221 1122333222211 22234444432 2233 5566655554432212223
Q ss_pred ecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEE
Q 022752 217 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 250 (292)
Q Consensus 217 p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v 250 (292)
-|+|. .+...|.+.+.+--++++ .+++++
T Consensus 145 NyYPr----~yTGLS~e~f~~kn~~fk-~~~i~t 173 (360)
T COG3589 145 NYYPR----PYTGLSREHFKRKNEIFK-EYNIKT 173 (360)
T ss_pred cccCC----cccCccHHHHHHHHHHHH-hcCCce
Confidence 45565 455678899998889999 788875
No 185
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=54.87 E-value=17 Score=29.97 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=29.6
Q ss_pred CcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 022752 79 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 125 (292)
Q Consensus 79 ~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~ 125 (292)
.+..|.+.| |+-+- ...++++++++.| ..+++|||.+
T Consensus 108 DVvvi~IAG-GdT~P---vTaaii~ya~~rG------~~TisT~GVF 144 (217)
T COG4015 108 DVVVICIAG-GDTIP---VTAAIINYAKERG------IKTISTNGVF 144 (217)
T ss_pred CEEEEEecC-CCcch---hHHHHHHHHHHcC------ceEeecCcee
Confidence 356788999 97654 4578999999987 6889999965
No 186
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=54.28 E-value=16 Score=21.08 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=12.2
Q ss_pred CCeEEEEcCCchhhHHH
Q 022752 114 PKRITVSTVGIVHAINK 130 (292)
Q Consensus 114 ~~~i~l~TNG~~~~~~~ 130 (292)
...|.|+|||.-|.+.+
T Consensus 4 ~LqI~ISTnG~sP~la~ 20 (30)
T PF14824_consen 4 PLQIAISTNGKSPRLAR 20 (30)
T ss_dssp TEEEEEEESSS-HHHHH
T ss_pred CeEEEEECCCCChHHHH
Confidence 37899999998776433
No 187
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=52.84 E-value=88 Score=33.09 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=24.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHhhCCcEEEEEe
Q 022752 186 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 217 (292)
Q Consensus 186 ~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p 217 (292)
+.++++.+-+..++.++.++|..+|+.+..+|
T Consensus 647 VNli~~~~~~~gD~~eik~lL~~~Gl~v~~vp 678 (917)
T PRK14477 647 VNILPGAHLTPADVEEIKEIVEAFGLDPVVVP 678 (917)
T ss_pred EEEeCCCCCChhhHHHHHHHHHHcCCceEEec
Confidence 34567766557899999999999999876655
No 188
>smart00642 Aamy Alpha-amylase domain.
Probab=51.97 E-value=65 Score=26.35 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhCCcE-EEEEecCCCCC----C-----CCcCC-----CcHHHHHHHHHHHHhcCCeEEEee
Q 022752 196 EQHAHQLGKLLETFQVV-VNLIPFNPIGS----V-----SQFRT-----SSDDKVSSFQKILRGSYNIRTTVR 253 (292)
Q Consensus 196 ~~~l~~l~~~l~~~~~~-v~l~p~~p~~~----~-----~~~~~-----~~~e~l~~~~~~l~~~~g~~v~ir 253 (292)
...+.+-+++|+++|+. |.+.|..+... . .++.. =+.+++..+.+.+. +.|+.|.+-
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h-~~Gi~vilD 89 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAH-ARGIKVILD 89 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHH-HCCCEEEEE
Confidence 34444444567777766 66666543321 1 11111 14577888888888 689887544
No 189
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=51.50 E-value=1.1e+02 Score=23.54 Aligned_cols=25 Identities=0% Similarity=-0.001 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 022752 95 YAALVEAVRIMTGLPFQVSPKRITVSTVGI 124 (292)
Q Consensus 95 ~~~i~ell~~~~~~g~~~~~~~i~l~TNG~ 124 (292)
++.+.++++.+++.| ..+.+.||+.
T Consensus 31 ~~gv~e~L~~Lk~~g-----~~l~i~Sn~~ 55 (128)
T TIGR01681 31 IKEIRDKLQTLKKNG-----FLLALASYND 55 (128)
T ss_pred HHHHHHHHHHHHHCC-----eEEEEEeCCC
Confidence 467899999999988 7899999983
No 190
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=51.08 E-value=98 Score=23.70 Aligned_cols=57 Identities=9% Similarity=0.197 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
..++.+++...+.+......-..|.+.+ +.-+.+..+.+++..+++.|+ .++.+.||
T Consensus 65 ~~v~~~~L~~~l~~~~~~~~~~~v~I~a--D~~~~~~~vv~v~d~~~~aG~----~~v~l~t~ 121 (122)
T TIGR02803 65 DPVARETLGTALDALTEGDKDTTIFFRA--DKTVDYGDLMKVMNLLRQAGY----LKIGLVGL 121 (122)
T ss_pred ccCCHHHHHHHHHHHHhcCCCceEEEEc--CCCCCHHHHHHHHHHHHHcCC----CEEEEEec
Confidence 3466777777776643321223566666 667778899999999999984 47888886
No 191
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=50.49 E-value=7.5 Score=36.38 Aligned_cols=36 Identities=17% Similarity=-0.040 Sum_probs=29.3
Q ss_pred EEEecCCccccCH---HHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 022752 83 VVFMGMGEPLNNY---AALVEAVRIMTGLPFQVSPKRITVSTVGI 124 (292)
Q Consensus 83 I~fsG~GEPll~~---~~i~ell~~~~~~g~~~~~~~i~l~TNG~ 124 (292)
+.+++ |||+..+ ....+++..+++.| ++..+.|++.
T Consensus 95 ~~~s~-ge~~~~~~~~~~~~~l~~~lk~lG-----f~~v~et~~~ 133 (374)
T TIGR02512 95 VRVAL-GEEFGMPIGTDVTGKMVAALRKLG-----FDYVFDTNFA 133 (374)
T ss_pred HHHHH-HHHhCCCccchHHHHHHHHHHHcC-----CCEEEECcHH
Confidence 55677 9999864 46789999999988 6799999974
No 192
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=50.03 E-value=79 Score=28.53 Aligned_cols=78 Identities=10% Similarity=0.166 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHH-HHHHHHhcCCeEEEeecccccccccccccccc-cC
Q 022752 195 EEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSS-FQKILRGSYNIRTTVRKQMGQDISGACGQLVV-NL 271 (292)
Q Consensus 195 ~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~-~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~-~~ 271 (292)
+..+..++++.+.+.|+. +-++ .|. |..++.+.+.. |.+++. ..++++.+=+..|.++.+..-.-+. ++
T Consensus 86 ~t~~~i~~~~~a~~~Gadav~~~--pP~-----y~~~~~~~i~~~f~~va~-~~~lpi~lYn~~g~~l~~~~l~~L~~~~ 157 (303)
T PRK03620 86 GTAQAIEYAQAAERAGADGILLL--PPY-----LTEAPQEGLAAHVEAVCK-STDLGVIVYNRDNAVLTADTLARLAERC 157 (303)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEC--CCC-----CCCCCHHHHHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHhhC
Confidence 456677777777777776 3332 232 11234455444 444444 5667766555556555443333334 66
Q ss_pred cCcccCCCC
Q 022752 272 PDKISAKST 280 (292)
Q Consensus 272 ~~~~~~~~~ 280 (292)
|.-+.-|.+
T Consensus 158 pni~giK~s 166 (303)
T PRK03620 158 PNLVGFKDG 166 (303)
T ss_pred CCEEEEEeC
Confidence 654444543
No 193
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=49.64 E-value=84 Score=25.70 Aligned_cols=90 Identities=10% Similarity=0.071 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhCCeEEEEEEEeCCCCC-------h------HHHHHHHHHHHhhCCcE-EEEEecC-CCCCCCCcC--
Q 022752 166 KLMNALKEYQKNSQQKIFIEYIMLDGVND-------E------EQHAHQLGKLLETFQVV-VNLIPFN-PIGSVSQFR-- 228 (292)
Q Consensus 166 ~vi~~l~~~~~~~~~~v~i~~vl~~g~nd-------~------~~~l~~l~~~l~~~~~~-v~l~p~~-p~~~~~~~~-- 228 (292)
.-++.+++++++++..+..-......... . .+.+.+.++.++.+|+. +.+.+.. +........
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~ 106 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEEN 106 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHH
Confidence 34556667777888875543333332221 1 56777888888888876 4443220 110001100
Q ss_pred -CCcHHHHHHHHHHHHhcCCeEEEeeccc
Q 022752 229 -TSSDDKVSSFQKILRGSYNIRTTVRKQM 256 (292)
Q Consensus 229 -~~~~e~l~~~~~~l~~~~g~~v~ir~~~ 256 (292)
..-.+.+.++.++++ ++|+.+.+.+..
T Consensus 107 ~~~~~~~l~~l~~~a~-~~gv~i~lE~~~ 134 (213)
T PF01261_consen 107 WERLAENLRELAEIAE-EYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHHHHHHHH-HHTSEEEEE-SS
T ss_pred HHHHHHHHHHHHhhhh-hhcceEEEeccc
Confidence 011223334445555 678877666543
No 194
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=49.10 E-value=2.4e+02 Score=26.65 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG 123 (292)
.++.+++++.+.++.+ .+++.+++.- | + ..+.+..+++.+ +.+.|.+-|
T Consensus 137 ~~t~d~~~~~v~~qa~-~GVdfmTIHa-G---V----~~~~~~~~~~~~-----R~~giVSRG 185 (432)
T COG0422 137 DLTEDDFFDTVEKQAE-QGVDFMTIHA-G---V----LLEYVPRTKRSG-----RVTGIVSRG 185 (432)
T ss_pred hCCHHHHHHHHHHHHH-hCCcEEEeeh-h---h----hHHHHHHHHhcC-----ceeeeeccc
Confidence 4666777777777655 3788888877 6 2 345666666654 566777776
No 195
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=47.52 E-value=2.2e+02 Score=25.80 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=49.1
Q ss_pred EecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 143 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 143 Sld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
-+-.+.+...+...+..--...+.+.+-++...+..+.++++.+=+- ..|+.++..++++.+.+.|+. +.+.+..+.
T Consensus 86 N~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g--~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~ 163 (309)
T PF01207_consen 86 NMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLG--WDDSPEETIEFARILEDAGVSAITVHGRTRK 163 (309)
T ss_dssp EE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESE--CT--CHHHHHHHHHHHHTT--EEEEECS-TT
T ss_pred cCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccc--cccchhHHHHHHHHhhhcccceEEEecCchh
Confidence 33344444444332222112345555555444445567787776653 335567788999999999976 767666554
Q ss_pred CCCCCcC-CCcHHHHHHHHHHHHhcCCeEEEee
Q 022752 222 GSVSQFR-TSSDDKVSSFQKILRGSYNIRTTVR 253 (292)
Q Consensus 222 ~~~~~~~-~~~~e~l~~~~~~l~~~~g~~v~ir 253 (292)
..+. +.+.+. +.+..+ ...+++...
T Consensus 164 ---q~~~~~a~w~~---i~~i~~-~~~ipvi~N 189 (309)
T PF01207_consen 164 ---QRYKGPADWEA---IAEIKE-ALPIPVIAN 189 (309)
T ss_dssp ---CCCTS---HHH---HHHCHH-C-TSEEEEE
T ss_pred ---hcCCcccchHH---HHHHhh-cccceeEEc
Confidence 3343 344444 444444 444666555
No 196
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=47.08 E-value=2e+02 Score=25.29 Aligned_cols=167 Identities=13% Similarity=0.073 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCC--
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPG-- 137 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~-- 137 (292)
..++.++.++.+....+ .+++.|-+.. |..+++. .+.++.+.+.. +...+...+.+....+....+.+..
T Consensus 15 ~~~~~~~k~~i~~~L~~-~Gv~~iEvg~---~~~~~~~-~~~~~~l~~~~---~~~~~~~l~r~~~~~v~~a~~~~~~~~ 86 (268)
T cd07940 15 VSLTPEEKLEIARQLDE-LGVDVIEAGF---PAASPGD-FEAVKRIAREV---LNAEICGLARAVKKDIDAAAEALKPAK 86 (268)
T ss_pred CCCCHHHHHHHHHHHHH-cCCCEEEEeC---CCCCHHH-HHHHHHHHHhC---CCCEEEEEccCCHhhHHHHHHhCCCCC
Confidence 45677777666665544 3777776633 3334333 25666666532 1244554444433334444444311
Q ss_pred ce-EEEEecCCChHH-HhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EE
Q 022752 138 LN-LAVSLHAPVQDV-RCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VN 214 (292)
Q Consensus 138 ~~-l~iSld~~~~~~-~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~ 214 (292)
++ +.+.+ +.++.. ...+. ......++.+.+.+ +++++.|..+.+...-... .+.+.+.++++.+.+.|+. +.
T Consensus 87 ~~~i~i~~-~~s~~~~~~~~~-~~~~~~~~~~~~~i-~~a~~~G~~v~~~~~~~~~--~~~~~~~~~~~~~~~~G~~~i~ 161 (268)
T cd07940 87 VDRIHTFI-ATSDIHLKYKLK-KTREEVLERAVEAV-EYAKSHGLDVEFSAEDATR--TDLDFLIEVVEAAIEAGATTIN 161 (268)
T ss_pred CCEEEEEe-cCCHHHHHHHhC-CCHHHHHHHHHHHH-HHHHHcCCeEEEeeecCCC--CCHHHHHHHHHHHHHcCCCEEE
Confidence 33 33333 334433 33331 11223455666666 4566677766655443322 3567888888888888876 54
Q ss_pred EEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCC
Q 022752 215 LIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 247 (292)
Q Consensus 215 l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g 247 (292)
+-.- .-...++++..+.+.+++.++
T Consensus 162 l~DT--------~G~~~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 162 IPDT--------VGYLTPEEFGELIKKLKENVP 186 (268)
T ss_pred ECCC--------CCCCCHHHHHHHHHHHHHhCC
Confidence 4211 112355666666666653444
No 197
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=45.69 E-value=93 Score=27.83 Aligned_cols=76 Identities=11% Similarity=0.162 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHH-HHHHHHhcCCeEEEeeccccccccccccccccc-C
Q 022752 195 EEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSS-FQKILRGSYNIRTTVRKQMGQDISGACGQLVVN-L 271 (292)
Q Consensus 195 ~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~-~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~-~ 271 (292)
+..+..++++.+.+.|+. +-++ +|. |..++.+.+.. +.+.++ ..++++.+-+..|.++.+..-.-+.+ +
T Consensus 79 ~t~~~i~~a~~a~~~Gad~v~~~--pP~-----y~~~~~~~i~~~f~~v~~-~~~~pi~lYn~~g~~l~~~~l~~L~~~~ 150 (289)
T cd00951 79 GTATAIAYAQAAEKAGADGILLL--PPY-----LTEAPQEGLYAHVEAVCK-STDLGVIVYNRANAVLTADSLARLAERC 150 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEC--CCC-----CCCCCHHHHHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHhcC
Confidence 345566677777777765 3332 222 11234444443 444444 45666555444455554333333333 5
Q ss_pred cCcccCC
Q 022752 272 PDKISAK 278 (292)
Q Consensus 272 ~~~~~~~ 278 (292)
|.-+-.|
T Consensus 151 pnivgiK 157 (289)
T cd00951 151 PNLVGFK 157 (289)
T ss_pred CCEEEEE
Confidence 5444444
No 198
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=45.30 E-value=1.2e+02 Score=28.20 Aligned_cols=150 Identities=19% Similarity=0.241 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHhhccCCcceEEEecC----CccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh--------HHH
Q 022752 63 SSGEIVEQLVHASRLSNIRNVVFMGM----GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA--------INK 130 (292)
Q Consensus 63 ~~eei~~~i~~~~~~~~~~~I~fsG~----GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~--------~~~ 130 (292)
+.++..+.+..+.. .|... .||.. +++.-..+.+.++++++++.| +.+.++.|..... +..
T Consensus 12 ~~~~~~~yi~~a~~-~Gf~~-iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~-----~~v~~Disp~~l~~lg~~~~dl~~ 84 (357)
T PF05913_consen 12 SFEENKAYIEKAAK-YGFKR-IFTSLHIPEDDPEDYLERLKELLKLAKELG-----MEVIADISPKVLKKLGISYDDLSF 84 (357)
T ss_dssp -HHHHHHHHHHHHC-TTEEE-EEEEE---------HHHHHHHHHHHHHHCT------EEEEEE-CCHHHTTT-BTTBTHH
T ss_pred CHHHHHHHHHHHHH-CCCCE-EECCCCcCCCCHHHHHHHHHHHHHHHHHCC-----CEEEEECCHHHHHHcCCCHHHHHH
Confidence 46666666766654 24433 23332 333344577899999999998 7899999975421 222
Q ss_pred HhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCC
Q 022752 131 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 210 (292)
Q Consensus 131 l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~ 210 (292)
+.+.+ ...+.+ | .+.+.+.+. ++.+. |.++.+|.-.+ +.+++..|.+.-....
T Consensus 85 ~~~lG-i~~lRl--D--------------~Gf~~~~ia----~ls~n-g~~I~LNASti-----~~~~l~~L~~~~~~~~ 137 (357)
T PF05913_consen 85 FKELG-IDGLRL--D--------------YGFSGEEIA----KLSKN-GIKIELNASTI-----TEEELDELIKYGANFS 137 (357)
T ss_dssp HHHHT--SEEEE--S--------------SS-SCHHHH----HHTTT--SEEEEETTT-------CCHHHHHCCTT--GG
T ss_pred HHHcC-CCEEEE--C--------------CCCCHHHHH----HHHhC-CCEEEEECCCC-----ChHHHHHHHHhcCCHH
Confidence 22222 122222 1 122222211 22222 56777664432 2234444433222211
Q ss_pred cEEEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEE
Q 022752 211 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251 (292)
Q Consensus 211 ~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ 251 (292)
-.....-|+|. .+...+.+.+.+--+.++ ++|+++.
T Consensus 138 ~i~a~HNfYPr----~~TGLs~~~f~~~n~~~k-~~gi~~~ 173 (357)
T PF05913_consen 138 NIIACHNFYPR----PYTGLSEEFFIEKNQLLK-EYGIKTA 173 (357)
T ss_dssp GEEEE---B-S----TT-SB-HHHHHHHHHHHH-HTT-EEE
T ss_pred HeEEEecccCC----CCCCCCHHHHHHHHHHHH-HCCCcEE
Confidence 11334456665 344568888888888899 8999874
No 199
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=45.18 E-value=30 Score=31.98 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=25.3
Q ss_pred eEEEecCCccccCHHHHHHHHHHHhCCCC
Q 022752 82 NVVFMGMGEPLNNYAALVEAVRIMTGLPF 110 (292)
Q Consensus 82 ~I~fsG~GEPll~~~~i~ell~~~~~~g~ 110 (292)
.+.|-|.|+|+|..+.|.++++.+++.|+
T Consensus 56 ~L~i~G~GDP~L~~~~L~~la~~l~~~Gi 84 (345)
T TIGR00666 56 NLVLRFGGDPTLKRQDIRNLVATLKKSGV 84 (345)
T ss_pred cEEEEeecCCCcCHHHHHHHHHHHHHcCC
Confidence 57777779999999999999999998873
No 200
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=44.53 E-value=57 Score=25.47 Aligned_cols=27 Identities=11% Similarity=0.318 Sum_probs=15.3
Q ss_pred EEEeecccccccccccccccccCcCcc
Q 022752 249 RTTVRKQMGQDISGACGQLVVNLPDKI 275 (292)
Q Consensus 249 ~v~ir~~~g~~~~~~c~~~~~~~~~~~ 275 (292)
.|-+-....+..|.+|.+++.+.--++
T Consensus 60 ~vG~I~~~s~~FC~~CNRiRlTsdG~l 86 (128)
T PF06463_consen 60 RVGFISPVSNPFCSSCNRIRLTSDGKL 86 (128)
T ss_dssp EEEEE-TTTS--GGG--EEEE-TTSEE
T ss_pred EEEEEeCCCCCCCCcCCEEEEccCccE
Confidence 355555666779999999999887665
No 201
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=44.27 E-value=18 Score=26.90 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=27.5
Q ss_pred cceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 022752 80 IRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 125 (292)
Q Consensus 80 ~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~ 125 (292)
++++...| ++|+-. -.++++.+++.| ..+.+.||...
T Consensus 5 ~dGvl~~g-~~~ipg---a~e~l~~L~~~g-----~~~~~lTNns~ 41 (101)
T PF13344_consen 5 LDGVLYNG-NEPIPG---AVEALDALRERG-----KPVVFLTNNSS 41 (101)
T ss_dssp STTTSEET-TEE-TT---HHHHHHHHHHTT-----SEEEEEES-SS
T ss_pred CccEeEeC-CCcCcC---HHHHHHHHHHcC-----CCEEEEeCCCC
Confidence 45666778 888664 468999999988 78999999864
No 202
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=43.99 E-value=2.1e+02 Score=24.73 Aligned_cols=177 Identities=13% Similarity=0.151 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHhhccCCc-ceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCc
Q 022752 60 SNLSSGEIVEQLVHASRLSNI-RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~-~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~ 138 (292)
...+.|+.++.+.+....... -+|-+-+ |+| -++....++.+...... ..=.++.-|+.. .++ +...
T Consensus 36 ny~tve~av~~mk~y~~~~~~avSVGLGa-Gdp-~Q~~~Va~Ia~~~~P~H-----VNQvFtgag~sr---~~L--g~~~ 103 (236)
T TIGR03581 36 NYPTVEEAIEDMKKYQKEIDNAVSVGLGA-GDP-NQSAMVADISAHTQPQH-----INQVFTGVGTSR---ALL--GQAD 103 (236)
T ss_pred CCCCHHHHHHHHHHHHHhCCCceEEecCC-CCH-HHHHHHHHHHHHcCCcc-----ccccccchHHHH---HHh--CCcc
Confidence 346778888888876543333 6788999 999 45666666666655432 222233333321 111 0001
Q ss_pred eEEEEecCCChHH-Hhhh-cCc------ccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCC
Q 022752 139 NLAVSLHAPVQDV-RCQI-MPA------ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 210 (292)
Q Consensus 139 ~l~iSld~~~~~~-~~~i-~~~------~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~ 210 (292)
.+.=.|-+++-+. +-++ +++ ..-.+.+..+ .++++.|. -.+.+.=+.|. ...+++..+++.+.+.+
T Consensus 104 T~vN~LvsPTG~~G~VkISTGp~Ss~~~~~iV~vetAi----aml~dmG~-~SiKffPM~Gl-~~leE~~avA~aca~~g 177 (236)
T TIGR03581 104 TVINGLVSPTGTPGLVNISTGPLSSQGKEAIVPIETAI----AMLKDMGG-SSVKFFPMGGL-KHLEEYAAVAKACAKHG 177 (236)
T ss_pred ceEEEeecCCCccceEEeccCcccccCCCceeeHHHHH----HHHHHcCC-CeeeEeecCCc-ccHHHHHHHHHHHHHcC
Confidence 1110111111110 0011 000 0113444444 44445554 24445557774 56789999999998877
Q ss_pred cEEEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEEeeccccccccccccc
Q 022752 211 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 266 (292)
Q Consensus 211 ~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~ 266 (292)
+. +.|.+ ..+.+.+..+.+++. +.|++..+.+..+.-|.+..|.
T Consensus 178 ~~-----lEPTG------GIdl~Nf~~I~~i~l-daGv~kviPHIYssiIDk~tG~ 221 (236)
T TIGR03581 178 FY-----LEPTG------GIDLDNFEEIVQIAL-DAGVEKVIPHVYSSIIDKETGN 221 (236)
T ss_pred Cc-----cCCCC------CccHHhHHHHHHHHH-HcCCCeeccccceeccccccCC
Confidence 53 37765 235567777777777 7899988888777666665554
No 203
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=43.39 E-value=2.3e+02 Score=24.84 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=29.0
Q ss_pred CcceEEEecCCccccCH-HHHHHHHHHHhCCCCCCCCCeEEEEcCCchh
Q 022752 79 NIRNVVFMGMGEPLNNY-AALVEAVRIMTGLPFQVSPKRITVSTVGIVH 126 (292)
Q Consensus 79 ~~~~I~fsG~GEPll~~-~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~ 126 (292)
.++.+-|.+ |--.+.+ +.+.+.++.+++.| |.+.|-|++.
T Consensus 24 yID~lKfg~-Gt~~l~~~~~l~eki~la~~~~-------V~v~~GGtl~ 64 (237)
T TIGR03849 24 YITFVKFGW-GTSALIDRDIVKEKIEMYKDYG-------IKVYPGGTLF 64 (237)
T ss_pred heeeEEecC-ceEeeccHHHHHHHHHHHHHcC-------CeEeCCccHH
Confidence 377888888 8777764 34788888888776 6667777654
No 204
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.04 E-value=1.6e+02 Score=26.09 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=43.8
Q ss_pred eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEE
Q 022752 189 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251 (292)
Q Consensus 189 ~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ 251 (292)
-|-.-++++.+.+.++.|++.+.. +...-|.|-.....|..+..+.+..+++..+ +.|+++.
T Consensus 33 GPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~-~~Gl~~~ 95 (266)
T PRK13398 33 GPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGD-KYNLPVV 95 (266)
T ss_pred eCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHH-HcCCCEE
Confidence 344456778888999999998876 4444555543334667677888888888888 7888753
No 205
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=42.74 E-value=2.7e+02 Score=25.47 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=58.0
Q ss_pred cCCCCHHHHHHHHHHhhc-cCCcceEEEecCCccc-cCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCC
Q 022752 59 KSNLSSGEIVEQLVHASR-LSNIRNVVFMGMGEPL-NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLP 136 (292)
Q Consensus 59 ~~~~~~eei~~~i~~~~~-~~~~~~I~fsG~GEPl-l~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~ 136 (292)
++.++.+++-+-+..... ....+.|+++| .=|- +..+...++++.+++.| ..+.++|.|-.+ .+.++..+
T Consensus 108 Gp~is~~~~~~~l~~~~~~l~~~d~VvlsG-SlP~g~~~d~y~~li~~~~~~g-----~~vilD~Sg~~L--~~~L~~~P 179 (310)
T COG1105 108 GPEISEAELEQFLEQLKALLESDDIVVLSG-SLPPGVPPDAYAELIRILRQQG-----AKVILDTSGEAL--LAALEAKP 179 (310)
T ss_pred CCCCCHHHHHHHHHHHHHhcccCCEEEEeC-CCCCCCCHHHHHHHHHHHHhcC-----CeEEEECChHHH--HHHHccCC
Confidence 355666554333333322 12356799999 5554 34677899999999998 889999999542 23333322
Q ss_pred CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHH
Q 022752 137 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 174 (292)
Q Consensus 137 ~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~ 174 (292)
.=|+- +.+....+.+. .-.+.++++++.+++
T Consensus 180 -----~lIKP-N~~EL~~~~g~-~~~~~~d~i~~a~~l 210 (310)
T COG1105 180 -----WLIKP-NREELEALFGR-ELTTLEDVIKAAREL 210 (310)
T ss_pred -----cEEec-CHHHHHHHhCC-CCCChHHHHHHHHHH
Confidence 11222 33333334322 223566778888663
No 206
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=42.66 E-value=70 Score=27.27 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
...+++.+.+.+.... +-+.+.++. |+|+++ ....++++.+++.| ..+.+...
T Consensus 55 ~~~~~~~~~i~~~~~~-g~~V~~L~~-GDP~~~-~~~~~l~~~~~~~g-----~~veviPG 107 (229)
T TIGR01465 55 MSLEEIVDIMSDAHRE-GKLVVRLHT-GDPSIY-GAIAEQMQLLEALG-----IPYEVVPG 107 (229)
T ss_pred CCHHHHHHHHHHHHHC-CCeEEEEeC-cCcccc-ccHHHHHHHHHHCC-----CCEEEECC
Confidence 3456777777654332 345677777 999995 66678888888776 45666544
No 207
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=42.60 E-value=65 Score=30.45 Aligned_cols=71 Identities=7% Similarity=0.174 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC-chh------------
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG-IVH------------ 126 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG-~~~------------ 126 (292)
..++.+++++.+.++... +++.+++.- | ++ .+.++.+++.+ +.+.+.+-| .+.
T Consensus 134 ~~~t~d~~~~~ie~qa~~-GVDfmtiH~-g---it----~~~~~~~~~~~-----R~~giVSRGGs~l~~WM~~n~~ENP 199 (420)
T PF01964_consen 134 VDMTEDDFFDVIEKQAKD-GVDFMTIHC-G---IT----RETLERLKKSG-----RIMGIVSRGGSILAAWMLHNGKENP 199 (420)
T ss_dssp GG--HHHHHHHHHHHHHH-T--EEEE-T-T---------GGGGGGGT--T-----SSS----HHHHHHHHHHHHHTS--H
T ss_pred hhCCHHHHHHHHHHHHHc-CCCEEEEcc-c---hh----HHHHHHHhhhc-----cccCccccchHHHHHHHHhcCCcCc
Confidence 458889999999887653 788888887 6 33 24455555443 344455554 211
Q ss_pred ---hHHHHhhhCCCceEEEEe
Q 022752 127 ---AINKFHSDLPGLNLAVSL 144 (292)
Q Consensus 127 ---~~~~l~~~~~~~~l~iSl 144 (292)
...++++-....|+++||
T Consensus 200 ly~~fD~lLeI~k~yDVtLSL 220 (420)
T PF01964_consen 200 LYEHFDRLLEIAKEYDVTLSL 220 (420)
T ss_dssp HHHTHHHHHHHHTTTT-EEEE
T ss_pred HHHhHHHHHHHHHHhCeeEec
Confidence 123444444457899999
No 208
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=42.54 E-value=1.8e+02 Score=26.08 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=12.6
Q ss_pred cCHHHHHHHHHHHhCCC
Q 022752 93 NNYAALVEAVRIMTGLP 109 (292)
Q Consensus 93 l~~~~i~ell~~~~~~g 109 (292)
++++.+.++++++.+.|
T Consensus 23 iD~~~l~~li~~l~~~G 39 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYG 39 (296)
T ss_pred cCHHHHHHHHHHHHhcC
Confidence 56677778888877766
No 209
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=42.42 E-value=62 Score=28.45 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCC
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 109 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g 109 (292)
..++.+++-+.+.+.... +...+-+-| |+|++ +-+-.|-++.+.+.|
T Consensus 63 ~~~~q~eIn~~lv~~a~~-G~~VVRLKg-GDP~i-FGRggEE~~~l~~~g 109 (244)
T COG0007 63 HSKPQDEINALLVELARE-GKRVVRLKG-GDPYI-FGRGGEEIEALAEAG 109 (244)
T ss_pred CCCCHHHHHHHHHHHHhc-CCeEEEecC-CCCCe-ecCcHHHHHHHHHcC
Confidence 556677877777765543 667889999 99999 577888889999888
No 210
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=42.15 E-value=2.5e+02 Score=25.07 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTG 107 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~ 107 (292)
.++.+.+.+.+..... .++++|.+.|. || +.|..+.-.++++.+.+
T Consensus 22 ~iD~~~l~~li~~l~~-~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~ 69 (296)
T TIGR03249 22 SFDEAAYRENIEWLLG-YGLEALFAAGGTGEFFSLTPAEYEQVVEIAVS 69 (296)
T ss_pred CcCHHHHHHHHHHHHh-cCCCEEEECCCCcCcccCCHHHHHHHHHHHHH
Confidence 4565665555555444 47888887664 66 44555555556655544
No 211
>PRK05434 phosphoglyceromutase; Provisional
Probab=42.01 E-value=3e+02 Score=27.07 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhhCCeEEEEEEEeC-CCCChHHHHHHHHHHHhhCCc-EEEEEecCCCCCCCCcCCCc-HHHHHHHHHH
Q 022752 165 EKLMNALKEYQKNSQQKIFIEYIMLD-GVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSS-DDKVSSFQKI 241 (292)
Q Consensus 165 ~~vi~~l~~~~~~~~~~v~i~~vl~~-g~nd~~~~l~~l~~~l~~~~~-~v~l~p~~p~~~~~~~~~~~-~e~l~~~~~~ 241 (292)
+...+++ +.+++.+..+++-=++.. |+....+++..|++.+++.|+ .+.+..|.- +++..+-+ ..-++++.+.
T Consensus 96 ~~~~~~~-~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~~~D---GRD~~p~s~~~~i~~l~~~ 171 (507)
T PRK05434 96 PALLDAI-DKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELAKEEGVKKVYVHAFLD---GRDTPPKSALGYLEELEAK 171 (507)
T ss_pred HHHHHHH-HHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHHHHcCCCEEEEEEecC---CCCCCchhHHHHHHHHHHH
Confidence 3444555 445666778887767666 466678899999999999998 587777754 34554444 3446677777
Q ss_pred HHhcCCe
Q 022752 242 LRGSYNI 248 (292)
Q Consensus 242 l~~~~g~ 248 (292)
++ ++|.
T Consensus 172 ~~-~~~~ 177 (507)
T PRK05434 172 LA-ELGV 177 (507)
T ss_pred HH-HhCC
Confidence 77 5553
No 212
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=41.44 E-value=40 Score=23.34 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHhhCCcEEEEEecCCCC-CCCCc-CCCcHHHHHHHHHHHHhcCCeE
Q 022752 195 EEQHAHQLGKLLETFQVVVNLIPFNPIG-SVSQF-RTSSDDKVSSFQKILRGSYNIR 249 (292)
Q Consensus 195 ~~~~l~~l~~~l~~~~~~v~l~p~~p~~-~~~~~-~~~~~e~l~~~~~~l~~~~g~~ 249 (292)
+..+.-++-+.|++.|+...++|.++.- ..-++ -..+.+..+.+.+.++ +.++.
T Consensus 10 st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~~d~~~i~~~l~-~~~i~ 65 (73)
T PF11823_consen 10 STHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFEPEDLEKIKEILE-ENGIE 65 (73)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEEChhhHHHHHHHHH-HCCCC
Confidence 3345555666666666666666655431 11122 2345566666666666 45544
No 213
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=41.32 E-value=93 Score=27.57 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=33.0
Q ss_pred CcHHHHHHHHHHHHhcCCe------EEEeecccccccccccccccccCcCc
Q 022752 230 SSDDKVSSFQKILRGSYNI------RTTVRKQMGQDISGACGQLVVNLPDK 274 (292)
Q Consensus 230 ~~~e~l~~~~~~l~~~~g~------~v~ir~~~g~~~~~~c~~~~~~~~~~ 274 (292)
.+.+++..|.+.++ ..|+ +..+++.....--.+||++++|+|=.
T Consensus 198 k~r~~~~~f~~~L~-~~~i~kiL~iEL~VrP~~d~~gm~gSGMivINPPwt 247 (279)
T COG2961 198 KDRRQIRRFLRALE-ALGIRKILQIELAVRPDSDPRGMNGSGMIVINPPWT 247 (279)
T ss_pred cchHHHHHHHHHHh-hcCccceeeeEEEecCCCCCCCccceeEEEECCCcc
Confidence 46778888988888 6666 34566655555568999999999954
No 214
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=40.93 E-value=81 Score=27.69 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEE
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVS 120 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~ 120 (292)
.+.+++.+.+.+.... +-+.+.++. |+|+++ ....++++.+.+.+ ..+.+.
T Consensus 64 ~~~~~i~~~i~~~~~~-g~~Vv~L~s-GDP~~y-g~~~~l~~~l~~~~-----i~veii 114 (257)
T PRK15473 64 LHLEQIIDLMEAGVKA-GKTVVRLQT-GDVSLY-GSIREQGEELTKRG-----IDFQVV 114 (257)
T ss_pred CCHHHHHHHHHHHHHC-CCeEEEEeC-cCchhh-hhHHHHHHHHHHCC-----CCEEEe
Confidence 4567777777765332 345677777 999994 77788888888766 455554
No 215
>PRK12677 xylose isomerase; Provisional
Probab=40.56 E-value=3.2e+02 Score=25.71 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCCc--cccCHH-----HHHHHHHHHhCCCCCCCCCeEE-EEcC
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGE--PLNNYA-----ALVEAVRIMTGLPFQVSPKRIT-VSTV 122 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE--Pll~~~-----~i~ell~~~~~~g~~~~~~~i~-l~TN 122 (292)
+.+++++.++.+.+. +.+.|.|.. .+ |+-... .+.++.+.+.+.| +.+. +++|
T Consensus 29 ~~~~~~E~v~~~a~~----Gf~gVElh~-~~l~p~~~~~~~~~~~~~~lk~~l~~~G-----L~v~~v~~n 89 (384)
T PRK12677 29 PPLDPVEAVHKLAEL----GAYGVTFHD-DDLVPFGATDAERDRIIKRFKKALDETG-----LVVPMVTTN 89 (384)
T ss_pred CCCCHHHHHHHHHHh----CCCEEEecc-cccCCCCCChhhhHHHHHHHHHHHHHcC-----CeeEEEecC
Confidence 346777777766654 567888886 53 332211 2567777777778 3444 5555
No 216
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=40.52 E-value=3.9e+02 Score=26.78 Aligned_cols=167 Identities=12% Similarity=0.072 Sum_probs=86.8
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCC------ccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch-------h
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMG------EPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-------H 126 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~G------EPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~-------~ 126 (292)
..++.++.+..+....+ .++..|-+.| | =|+++-+ =.+.++.+++.. ++..+.+...|.. +
T Consensus 22 tr~~~~d~l~ia~~ld~-~G~~siE~~G-Gatf~~~~~~~~e~-p~e~lr~l~~~~---~~~~lqml~Rg~n~vg~~~yp 95 (593)
T PRK14040 22 TRLRLDDMLPIAAKLDK-VGYWSLESWG-GATFDACIRFLGED-PWERLRELKKAM---PNTPQQMLLRGQNLLGYRHYA 95 (593)
T ss_pred cccCHHHHHHHHHHHHH-cCCCEEEecC-CcchhhhccccCCC-HHHHHHHHHHhC---CCCeEEEEecCcceeccccCc
Confidence 46777887766655443 3788888887 6 5566522 234555555442 1244555556521 1
Q ss_pred h--HHH---HhhhCCCceEE-EEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEE--EEEEEeCCCCChHHH
Q 022752 127 A--INK---FHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF--IEYIMLDGVNDEEQH 198 (292)
Q Consensus 127 ~--~~~---l~~~~~~~~l~-iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~--i~~vl~~g~nd~~~~ 198 (292)
+ +.. .+... .+++. |. ++.++ ++++..++ +++++.|..+. +.++..+ .++.+.
T Consensus 96 ddvv~~~v~~a~~~-Gid~~rif-d~lnd--------------~~~~~~ai-~~ak~~G~~~~~~i~yt~~p--~~~~~~ 156 (593)
T PRK14040 96 DDVVERFVERAVKN-GMDVFRVF-DAMND--------------PRNLETAL-KAVRKVGAHAQGTLSYTTSP--VHTLQT 156 (593)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEe-eeCCc--------------HHHHHHHH-HHHHHcCCeEEEEEEEeeCC--ccCHHH
Confidence 1 111 12122 24432 32 22222 34555666 56777777653 4444444 345677
Q ss_pred HHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEE--Eeecccccc
Q 022752 199 AHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT--TVRKQMGQD 259 (292)
Q Consensus 199 l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v--~ir~~~g~~ 259 (292)
+.++++.+.+.|+. +.+-.- .. ...++++.++.+.+++..++++ ......|..
T Consensus 157 ~~~~a~~l~~~Gad~i~i~Dt------~G--~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA 212 (593)
T PRK14040 157 WVDLAKQLEDMGVDSLCIKDM------AG--LLKPYAAYELVSRIKKRVDVPLHLHCHATTGLS 212 (593)
T ss_pred HHHHHHHHHHcCCCEEEECCC------CC--CcCHHHHHHHHHHHHHhcCCeEEEEECCCCchH
Confidence 88888888888876 544211 11 2355666666666654445544 334444443
No 217
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=40.28 E-value=4e+02 Score=26.75 Aligned_cols=169 Identities=10% Similarity=0.083 Sum_probs=87.0
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCCcc------ccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC-----ch--h
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEP------LNNYAALVEAVRIMTGLPFQVSPKRITVSTVG-----IV--H 126 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEP------ll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG-----~~--~ 126 (292)
..++.++.+..+....+ .++..|-+.| |.= +++ +.-.+.++.+++.. +...+.....| +. +
T Consensus 21 tr~~t~d~l~ia~~l~~-~G~~~iE~~g-gatfd~~~rfl~-edp~e~l~~l~~~~---~~~~l~~l~Rg~N~~gy~~yp 94 (592)
T PRK09282 21 TRMRTEDMLPIAEKLDK-VGFWSLEVWG-GATFDVCIRYLN-EDPWERLRKLKKAL---PNTPLQMLLRGQNLVGYRHYP 94 (592)
T ss_pred ccCCHHHHHHHHHHHHH-cCCCEEEecC-CccchhhcccCC-ccHHHHHHHHHHhC---CCCEEEEEecccccccccccc
Confidence 45777887776666544 3788888888 754 454 23445566665541 12445544443 11 1
Q ss_pred h------HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHH
Q 022752 127 A------INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAH 200 (292)
Q Consensus 127 ~------~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~ 200 (292)
+ ++...+.+ +++.--+++.++ .+++..++ +++++.|..+...+...-+-..+.+.+.
T Consensus 95 d~vv~~~v~~A~~~G--vd~irif~~lnd--------------~~n~~~~i-~~ak~~G~~v~~~i~~t~~p~~t~~~~~ 157 (592)
T PRK09282 95 DDVVEKFVEKAAENG--IDIFRIFDALND--------------VRNMEVAI-KAAKKAGAHVQGTISYTTSPVHTIEKYV 157 (592)
T ss_pred chhhHHHHHHHHHCC--CCEEEEEEecCh--------------HHHHHHHH-HHHHHcCCEEEEEEEeccCCCCCHHHHH
Confidence 1 22222222 333211222232 13445556 5666777766644433222124567788
Q ss_pred HHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEE--Eeecccccc
Q 022752 201 QLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT--TVRKQMGQD 259 (292)
Q Consensus 201 ~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v--~ir~~~g~~ 259 (292)
++++.+.+.|+. +.+-.- .. ...++++..+.+.+++..++++ ......|..
T Consensus 158 ~~a~~l~~~Gad~I~i~Dt------~G--~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla 211 (592)
T PRK09282 158 ELAKELEEMGCDSICIKDM------AG--LLTPYAAYELVKALKEEVDLPVQLHSHCTSGLA 211 (592)
T ss_pred HHHHHHHHcCCCEEEECCc------CC--CcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcH
Confidence 888888888876 544211 11 1345566666666654455443 344444443
No 218
>PLN02645 phosphoglycolate phosphatase
Probab=39.93 E-value=40 Score=30.55 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHhhc-cCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 022752 61 NLSSGEIVEQLVHASR-LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 125 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~-~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~ 125 (292)
.++.+++.+.+....- ...++++.+.| ++|+- ...+.++.+++.| ..+.+.||...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~D~DGtl~~~-~~~~~---ga~e~l~~lr~~g-----~~~~~~TN~~~ 71 (311)
T PLN02645 15 LLTLENADELIDSVETFIFDCDGVIWKG-DKLIE---GVPETLDMLRSMG-----KKLVFVTNNST 71 (311)
T ss_pred cCCHHHHHHHHHhCCEEEEeCcCCeEeC-CccCc---CHHHHHHHHHHCC-----CEEEEEeCCCC
Confidence 3445555555544321 23678888999 87753 3579999999988 78999999753
No 219
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=39.27 E-value=1.7e+02 Score=23.51 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhC---CCCCCCCCeEEEEcCCch
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG---LPFQVSPKRITVSTVGIV 125 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~---~g~~~~~~~i~l~TNG~~ 125 (292)
...+.+++.-.+. +..|.|+| |+.-.+-|.+.++.+++ .+..+ ....|.|.|..
T Consensus 64 ~Gi~gvl~~Y~~~-----~~~v~l~G---PT~fapiI~~a~~~a~~~~~~~~~Y--~iLlIlTDG~i 120 (146)
T PF07002_consen 64 QGIDGVLEAYRKA-----LPKVQLSG---PTNFAPIINHAAKIAKQSNQNGQQY--FILLILTDGQI 120 (146)
T ss_pred cCHHHHHHHHHHH-----hhheEECC---CccHHHHHHHHHHHHhhhccCCceE--EEEEEeccccc
Confidence 3345555554443 45799998 77756667777777773 22111 34556777754
No 220
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=38.91 E-value=3e+02 Score=24.94 Aligned_cols=141 Identities=14% Similarity=0.260 Sum_probs=75.4
Q ss_pred CcCcCCCCCCCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh
Q 022752 48 CNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA 127 (292)
Q Consensus 48 C~yC~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~ 127 (292)
|-||-.+..+.-...+..+.++.+. .+.+.+.+-++- | .. +.-......+.+.| -.+.++.|.....
T Consensus 47 CD~C~~Grldei~kPpI~~F~~dla---eFlg~D~~R~t~-G---AR-e~KfavMhal~~~g-----d~vV~D~~aHYtt 113 (382)
T COG1103 47 CDFCLEGRLDEITKPPIKDFLEDLA---EFLGMDEVRVTA-G---AR-EAKFAVMHALCKEG-----DWVVVDSLAHYTT 113 (382)
T ss_pred hhhhccCccccccCCcHHHHHHHHH---HHhCCceeeecc-c---ch-hhHHHHHHHhccCC-----CEEEEcCcchHHH
Confidence 8899776554333333445455443 345778888888 7 22 22223444455555 5788888886532
Q ss_pred HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEE-EEeCCCCChHHHHHHHHHHH
Q 022752 128 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY-IMLDGVNDEEQHAHQLGKLL 206 (292)
Q Consensus 128 ~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~-vl~~g~nd~~~~l~~l~~~l 206 (292)
.++.+.....+..--+...|+.+ +. ...+.++++.+ .++.|.++.+.. +-..|...+..+..++++.+
T Consensus 114 --yvAAEragl~v~eVp~tg~Pey~--i~----~e~y~~viee~---~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic 182 (382)
T COG1103 114 --YVAAERAGLNVAEVPNTGYPEYK--IT----PEGYAEVIEEV---KDEGGDPPALALLTHVDGEYGNLADAKKVAKIC 182 (382)
T ss_pred --HHHHHhcCCeEEecCCCCCCceE--ec----HHHHHHHHHHH---HhccCCCceEEEEeccCCCcCCchhhHHHHHHH
Confidence 22222212344322233333322 11 12345555555 335555454443 33456666778889999999
Q ss_pred hhCCcE
Q 022752 207 ETFQVV 212 (292)
Q Consensus 207 ~~~~~~ 212 (292)
.+.++.
T Consensus 183 ~e~gvP 188 (382)
T COG1103 183 REYGVP 188 (382)
T ss_pred HHcCCc
Confidence 988764
No 221
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=38.32 E-value=1.4e+02 Score=27.88 Aligned_cols=63 Identities=11% Similarity=0.142 Sum_probs=46.7
Q ss_pred EeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEE
Q 022752 188 MLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251 (292)
Q Consensus 188 l~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ 251 (292)
.-|..-++.+.+.+.|+.++..++. +.-..|.|...-..|..+..+.+..+.++.+ ++|+.+.
T Consensus 123 aGpc~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~-~~Gl~~~ 186 (360)
T PRK12595 123 FGPCSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVAD-EYGLAVI 186 (360)
T ss_pred EecccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHH-HcCCCEE
Confidence 3455667888999999999998876 3334455543335688888899999999988 7898754
No 222
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=38.01 E-value=2.7e+02 Score=24.41 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=27.9
Q ss_pred HHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhC-CcEEEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEE
Q 022752 175 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 250 (292)
Q Consensus 175 ~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~-~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v 250 (292)
+.+.|.++.+.+=+ .+.+++++.++.+... +..+.++--. ..|+.+..+--......|++.+++++
T Consensus 109 ~A~tgkPvIlSTG~-----stl~EI~~Av~~~~~~~~~~l~llHC~-----s~YP~~~e~~NL~~i~~L~~~f~~~v 175 (241)
T PF03102_consen 109 IAKTGKPVILSTGM-----STLEEIERAVEVLREAGNEDLVLLHCV-----SSYPTPPEDVNLRVIPTLKERFGVPV 175 (241)
T ss_dssp HHTT-S-EEEE-TT-------HHHHHHHHHHHHHHCT--EEEEEE------SSSS--GGG--TTHHHHHHHHSTSEE
T ss_pred HHHhCCcEEEECCC-----CCHHHHHHHHHHHHhcCCCCEEEEecC-----CCCCCChHHcChHHHHHHHHhcCCCE
Confidence 34466776654322 3567888888888443 3345444221 12332332222233344444566665
No 223
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=37.95 E-value=1.9e+02 Score=27.36 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=21.2
Q ss_pred EEeCCCCChHHHHHHHHHHHhhCCcEEEEEe
Q 022752 187 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 217 (292)
Q Consensus 187 vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p 217 (292)
.++.+.+....++.++.++|+.+|+.++.++
T Consensus 159 Nlig~~~~~~~d~~el~~lL~~~Gl~v~~~~ 189 (428)
T cd01965 159 NLLPGFPLTPGDVREIKRILEAFGLEPIILP 189 (428)
T ss_pred EEECCCCCCccCHHHHHHHHHHcCCCEEEec
Confidence 3455554444468889999999998866553
No 224
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=37.51 E-value=2.8e+02 Score=26.29 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=23.3
Q ss_pred EEeCCCCChHHHHHHHHHHHhhCCcEEEEEe
Q 022752 187 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 217 (292)
Q Consensus 187 vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p 217 (292)
.++++.+-+..++.++.++|+.+|+.+..+|
T Consensus 161 Niig~~~~~~~D~~eik~lL~~~Gl~v~~l~ 191 (417)
T cd01966 161 NLLPGAHLTPGDVEELKDIIEAFGLEPIILP 191 (417)
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCceEEec
Confidence 3556655556789999999999998876553
No 225
>PLN02444 HMP-P synthase
Probab=36.73 E-value=3.4e+02 Score=27.05 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecCC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMG 89 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~G 89 (292)
.++.+++++.+.++.+ .|++.+++.- |
T Consensus 296 ~lt~d~~~d~ieeQae-qGVDfmTIH~-G 322 (642)
T PLN02444 296 NLTWEVFRETLIEQAE-QGVDYFTIHA-G 322 (642)
T ss_pred hCCHHHHHHHHHHHHH-hCCCEEEECh-h
Confidence 5778888888888765 4899999888 7
No 226
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=35.75 E-value=1.3e+02 Score=29.23 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCC
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 109 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g 109 (292)
+.-+++.+.+.+... .+-..+.+.| |+|++ +....+.++.+.+.|
T Consensus 64 ~~qe~i~~~l~~~a~-~Gk~VvrL~~-GDP~v-fg~~~ee~~~l~~~g 108 (474)
T PRK07168 64 MRQEMINAHLLQFAK-EGKIVVRLKG-GDPSI-FGRVGEEAETLAAAN 108 (474)
T ss_pred ccHHHHHHHHHHHHh-CCCEEEEEeC-CCchH-HhhHHHHHHHHHhCC
Confidence 333444444444333 2446777899 99999 577778888888776
No 227
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=35.69 E-value=1.8e+02 Score=25.84 Aligned_cols=76 Identities=13% Similarity=0.244 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHH-HHHHHHhcCCeEEEeecc---cccccccccccccc
Q 022752 195 EEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSS-FQKILRGSYNIRTTVRKQ---MGQDISGACGQLVV 269 (292)
Q Consensus 195 ~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~-~~~~l~~~~g~~v~ir~~---~g~~~~~~c~~~~~ 269 (292)
+.++..++++..++.|+. +-++ .|. |..++.+++.. +..+.+ ..++++.+-+. .|.++.+..-.-+.
T Consensus 78 s~~~~i~~a~~a~~~Gad~v~v~--pP~-----y~~~~~~~i~~~~~~i~~-~~~~pi~lYn~P~~tg~~l~~~~l~~L~ 149 (285)
T TIGR00674 78 ATEEAISLTKFAEDVGADGFLVV--TPY-----YNKPTQEGLYQHFKAIAE-EVDLPIILYNVPSRTGVSLYPETVKRLA 149 (285)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEc--CCc-----CCCCCHHHHHHHHHHHHh-cCCCCEEEEECcHHhcCCCCHHHHHHHH
Confidence 456777888888888876 4443 232 11234555544 444445 55677654432 35555544433344
Q ss_pred cCcCcccCC
Q 022752 270 NLPDKISAK 278 (292)
Q Consensus 270 ~~~~~~~~~ 278 (292)
.+|.-+..|
T Consensus 150 ~~~~v~giK 158 (285)
T TIGR00674 150 EEPNIVAIK 158 (285)
T ss_pred cCCCEEEEE
Confidence 566544444
No 228
>PF15269 zf-C2H2_7: Zinc-finger
Probab=35.68 E-value=25 Score=22.19 Aligned_cols=6 Identities=33% Similarity=1.215 Sum_probs=3.4
Q ss_pred CCCcCC
Q 022752 43 GCKMGC 48 (292)
Q Consensus 43 gCNl~C 48 (292)
.|+|.|
T Consensus 25 qcpftc 30 (54)
T PF15269_consen 25 QCPFTC 30 (54)
T ss_pred cCCccc
Confidence 466655
No 229
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=35.58 E-value=2.9e+02 Score=24.84 Aligned_cols=107 Identities=11% Similarity=0.107 Sum_probs=54.4
Q ss_pred ccHHHHHHHHHHHHHhhCCeEEEEEEEeCC--CCChHHHHHHHHHHHhhCC-cEEEEEecCCCCCCCCcCCCcHHHHHHH
Q 022752 162 FPLEKLMNALKEYQKNSQQKIFIEYIMLDG--VNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSVSQFRTSSDDKVSSF 238 (292)
Q Consensus 162 ~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g--~nd~~~~l~~l~~~l~~~~-~~v~l~p~~p~~~~~~~~~~~~e~l~~~ 238 (292)
..++++.+++.+++..-+..+.+..+--.| ...+.+++.++++.+.+.. +.+.+-.-+-. +..+...+.+..+.+
T Consensus 118 ~~l~~i~~~Ln~~~~~~~v~i~~e~~agegs~~g~~F~~L~eii~~~~~~~~igvCiDtcH~~--Aagy~~~~~~~~~~v 195 (280)
T COG0648 118 EGLNRIAEALNELLEEEGVIILLENTAGEGSGKGTQFGELAEIIDLIEEKERIGVCIDTCHAF--AAGYDIITEEDFEKV 195 (280)
T ss_pred HHHHHHHHHHHHHhhccCCeEEEEEeccccCccccchhhHHHHHHhhcccCceEEEEEchhhh--hccCCcCcHHHHHHH
Confidence 356677777766655212223333322222 2334577777877777664 44444333433 233333344666666
Q ss_pred HHHHHhcCCeEEEeecccccccccccccccccC
Q 022752 239 QKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 271 (292)
Q Consensus 239 ~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~~ 271 (292)
.+.+.+..|++ .++...=+|..-.||..+.+|
T Consensus 196 l~~~d~~~G~~-~~~~~Hlndsk~~~G~~kDRH 227 (280)
T COG0648 196 LNEFDKVLGLE-YLKHIHLNDSKYPLGSNKDRH 227 (280)
T ss_pred HHHHHHHhChh-hheeEeecCcccccccccccc
Confidence 66665455654 334333445555666655554
No 230
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=34.92 E-value=1.9e+02 Score=21.55 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhC---CcEEEEE
Q 022752 164 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLI 216 (292)
Q Consensus 164 ~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~---~~~v~l~ 216 (292)
++.+++++..++++.+.++.+++-+.==...+...+-.|.+.|.+. |..|.+.
T Consensus 27 y~Pi~~wl~~Yl~~~~~~i~~~~~L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~v~ 82 (99)
T PF09345_consen 27 YQPILDWLEAYLAEPNKPITFNFKLSYFNTSSSKALMDIFDLLEDAAQKGGKVTVN 82 (99)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEEEEEecHhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 5678999999988877777777654322233456666777777543 4445443
No 231
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.43 E-value=2.1e+02 Score=25.31 Aligned_cols=61 Identities=7% Similarity=0.096 Sum_probs=45.5
Q ss_pred CCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEE
Q 022752 190 DGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251 (292)
Q Consensus 190 ~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ 251 (292)
|-.-++++.+.++++.+++.|+. +.--.|.|-..-..|+.+..+-+..+.+..+ ++|+++.
T Consensus 22 PC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~-~~Gl~~~ 83 (250)
T PRK13397 22 PCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQ-EFGLLSV 83 (250)
T ss_pred cCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHH-HcCCCEE
Confidence 44557888999999999998876 4434566654456788888888888888888 7888753
No 232
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=33.65 E-value=3.6e+02 Score=26.74 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecCC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMG 89 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~G 89 (292)
.++.+++++.+.++.+ .+++.+++.- |
T Consensus 291 ~lt~e~~~d~ieeQAe-qGVDf~TIHa-G 317 (607)
T PRK09284 291 DLTWEIFRDTLIEQAE-QGVDYFTIHA-G 317 (607)
T ss_pred hCCHHHHHHHHHHHHH-hCCCEEEECh-h
Confidence 4777888888887665 4889999888 7
No 233
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=33.58 E-value=1.3e+02 Score=23.64 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=36.4
Q ss_pred HHHHHHHhhCCcE---E-----EEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEEeeccc
Q 022752 200 HQLGKLLETFQVV---V-----NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 256 (292)
Q Consensus 200 ~~l~~~l~~~~~~---v-----~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ir~~~ 256 (292)
+++++.+++.+++ + ....|+|+......+....+-+.++.+.+. +.|++|.++...
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h-~~Girv~ay~~~ 66 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACH-ERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHH-HCCCEEEEEEee
Confidence 5667777776654 2 346778875333344455666777777888 789998777643
No 234
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=33.29 E-value=2.7e+02 Score=24.74 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=38.6
Q ss_pred HHHHHHHhhC-CeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCC---CCCcCCCcHHHHHHHHHHHHh
Q 022752 170 ALKEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGS---VSQFRTSSDDKVSSFQKILRG 244 (292)
Q Consensus 170 ~l~~~~~~~~-~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~---~~~~~~~~~e~l~~~~~~l~~ 244 (292)
.+...+++.+ ..+.+-++ .|. ..+++++..|+..++. +.++||+-+.. ..+...... +.-+..|+
T Consensus 161 ~l~~~l~~~~~~~v~vgtv--EG~----P~~~~vi~~L~~~g~k~V~L~PlMlVAGdHa~nDmaGde~---dSWks~L~- 230 (262)
T PF06180_consen 161 ALQAMLKKHGYPNVFVGTV--EGY----PSLEDVIARLKKKGIKKVHLIPLMLVAGDHAKNDMAGDEE---DSWKSRLE- 230 (262)
T ss_dssp HHHHHHHCCT-TTEEEEET--TSS----SBHHHHHHHHHHHT-SEEEEEEESSS--HHHHCCCCSSST---TSHHHHHH-
T ss_pred HHHHHHHhCCCCeEEEEEe--CCC----CCHHHHHHHHHhcCCCeEEEEecccccchhhhhhhcCCCc---chHHHHHH-
Confidence 3434455544 44555433 442 2467777788877765 99999987631 112221111 23456677
Q ss_pred cCCeEEEe
Q 022752 245 SYNIRTTV 252 (292)
Q Consensus 245 ~~g~~v~i 252 (292)
..|+.|.+
T Consensus 231 ~~G~~v~~ 238 (262)
T PF06180_consen 231 AAGFEVTC 238 (262)
T ss_dssp HTT-EEEE
T ss_pred HCCCEEEE
Confidence 67887654
No 235
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=33.20 E-value=1.4e+02 Score=23.77 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecC
Q 022752 164 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFN 219 (292)
Q Consensus 164 ~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~ 219 (292)
-+..++++++.++.....=.+.+++-+|-....+|.+.+.+|++.+... +.+..|.
T Consensus 68 ~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~ 124 (140)
T PF06962_consen 68 PETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQ 124 (140)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEE
T ss_pred cHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 4566777766555432222455677788766778999999999998643 5544443
No 236
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=32.96 E-value=2.1e+02 Score=25.56 Aligned_cols=59 Identities=8% Similarity=0.138 Sum_probs=46.9
Q ss_pred CCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEE
Q 022752 192 VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251 (292)
Q Consensus 192 ~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ 251 (292)
-..+++++...++.++..|.+ +.--+|.|...-..|+....+.+..+.+... .+|+++.
T Consensus 54 svEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~-~~Gl~vv 113 (286)
T COG2876 54 SVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAAD-ETGLPVV 113 (286)
T ss_pred ccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHH-HcCCeeE
Confidence 346789999999999998877 6666788865556788888888888888777 8898864
No 237
>PRK07328 histidinol-phosphatase; Provisional
Probab=32.75 E-value=3.4e+02 Score=23.79 Aligned_cols=148 Identities=8% Similarity=0.047 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccc------------cC---HHHHHHHHHHHhCCCCCCCCCeEEEEcC---C
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPL------------NN---YAALVEAVRIMTGLPFQVSPKRITVSTV---G 123 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPl------------l~---~~~i~ell~~~~~~g~~~~~~~i~l~TN---G 123 (292)
.++++.++.+.+ .++..+.||..+.-. +. ++...+-++.++++.-++ .+.+.+..+ |
T Consensus 18 ~~~ee~v~~A~~----~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i-~Il~GiE~~~~~~ 92 (269)
T PRK07328 18 GTPEEYVQAARR----AGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDL-YVRLGIEADYHPG 92 (269)
T ss_pred CCHHHHHHHHHH----CCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCC-eEEEEEEecccCC
Confidence 346676665544 367888888754310 11 223344455555441011 144555554 3
Q ss_pred chhhHHHHhhhCCCceEE-EEecCCC------hHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCC----
Q 022752 124 IVHAINKFHSDLPGLNLA-VSLHAPV------QDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV---- 192 (292)
Q Consensus 124 ~~~~~~~l~~~~~~~~l~-iSld~~~------~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~---- 192 (292)
......++++.. .+|.. .|++..+ +.....+...+...-+++-.+.+.+.++.....+.-+.-++.-+
T Consensus 93 ~~~~~~~~l~~~-~~D~vigSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~ 171 (269)
T PRK07328 93 TEEFLERLLEAY-PFDYVIGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRP 171 (269)
T ss_pred cHHHHHHHHHhC-CCCeEEEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCC
Confidence 333344555544 36655 4887643 11222121111111122222234333333233333333222211
Q ss_pred -CChHHHHHHHHHHHhhCCcEEEE
Q 022752 193 -NDEEQHAHQLGKLLETFQVVVNL 215 (292)
Q Consensus 193 -nd~~~~l~~l~~~l~~~~~~v~l 215 (292)
.+..+.++++++.+++.|..+.+
T Consensus 172 ~~~~~~~~~~il~~~~~~g~~lEi 195 (269)
T PRK07328 172 REDLTELYEEALDVIAAAGLALEV 195 (269)
T ss_pred chhHHHHHHHHHHHHHHcCCEEEE
Confidence 11345667888888888765433
No 238
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=32.13 E-value=1.4e+02 Score=21.33 Aligned_cols=67 Identities=16% Similarity=0.254 Sum_probs=31.8
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCC-------CCCc--CCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHH
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGT-------MGFK--SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEA 101 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~-------~~~~--~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~el 101 (292)
..+++|...+..|+ .|+||.... ..+. ......++.+.+.+......+..| |-+ |+.....+.+.++
T Consensus 8 ~~vvvf~k~~~~~~-~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v-fi~-g~~iGG~~~l~~l 83 (90)
T cd03028 8 NPVVLFMKGTPEEP-RCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQL-YVN-GELVGGCDIVKEM 83 (90)
T ss_pred CCEEEEEcCCCCCC-CCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE-EEC-CEEEeCHHHHHHH
Confidence 45778873333333 599997721 1110 111224444555443222223333 667 7766666655443
No 239
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=31.94 E-value=4.4e+02 Score=25.89 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhCCeEEEEEEEeC-CCCChHHHHHHHHHHHhhCCc-EEEEEecCCCCCCCCcCCCcH-HHHHHHHHH
Q 022752 165 EKLMNALKEYQKNSQQKIFIEYIMLD-GVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSD-DKVSSFQKI 241 (292)
Q Consensus 165 ~~vi~~l~~~~~~~~~~v~i~~vl~~-g~nd~~~~l~~l~~~l~~~~~-~v~l~p~~p~~~~~~~~~~~~-e~l~~~~~~ 241 (292)
+...+++ +.+++.+..+++-=++.+ |+....+++..|++.+++.|+ .+.+..|.- +++.++-+. +-++++.+.
T Consensus 92 ~~l~~~~-~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~D---GRD~~p~s~~~~~~~l~~~ 167 (501)
T TIGR01307 92 PALLGAI-DRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFTD---GRDTAPKSAESYLEQLQAF 167 (501)
T ss_pred HHHHHHH-HHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEecC---CCCCCchhHHHHHHHHHHH
Confidence 4445555 445666777887777766 466678999999999999988 477777754 355554443 446667777
Q ss_pred HHhcCC
Q 022752 242 LRGSYN 247 (292)
Q Consensus 242 l~~~~g 247 (292)
++ +.|
T Consensus 168 ~~-~~~ 172 (501)
T TIGR01307 168 LK-EIG 172 (501)
T ss_pred HH-HhC
Confidence 77 444
No 240
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=31.84 E-value=2.6e+02 Score=22.05 Aligned_cols=56 Identities=9% Similarity=0.208 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEc
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVST 121 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~T 121 (292)
..++.+++...+.+......-..|.+.+ +.-..+..+.+++..+++.|+ .++.+.|
T Consensus 79 ~~v~~~~L~~~L~~~~~~~~~~~V~I~a--D~~~~~~~vv~vmd~l~~aG~----~~v~l~t 134 (141)
T PRK11267 79 DPVTDETMITALDALTEGKKDTTIFFRA--DKTVDYETLMKVMDTLHQAGY----LKIGLVG 134 (141)
T ss_pred ccccHHHHHHHHHHHHhcCCCceEEEEc--CCCCCHHHHHHHHHHHHHcCC----CeEEEEe
Confidence 3466677777776643321223566666 667778999999999999984 4688777
No 241
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=30.90 E-value=3.4e+02 Score=23.12 Aligned_cols=175 Identities=11% Similarity=0.089 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecCCccccCH---HHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHH----Hhh
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY---AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINK----FHS 133 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~---~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~----l~~ 133 (292)
.++.++..+.+....+ .+++.|-+. -|+... +.+.++.+.+.+. .+..-+......++. +..
T Consensus 10 ~~~~~~k~~i~~~L~~-~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~ 78 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDE-AGVDYIEVG---FPFASEDDFEQVRRLREALPNA-------RLQALCRANEEDIERAVEAAKE 78 (237)
T ss_dssp T--HHHHHHHHHHHHH-HTTSEEEEE---HCTSSHHHHHHHHHHHHHHHSS-------EEEEEEESCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-hCCCEEEEc---ccccCHHHHHHhhhhhhhhccc-------ccceeeeehHHHHHHHHHhhHh
Confidence 3566666665555433 367776665 355553 3344444444442 222222221111222 222
Q ss_pred hCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-
Q 022752 134 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV- 212 (292)
Q Consensus 134 ~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~- 212 (292)
.+ ...+.+.+.. ++.+.+..........++.+.+.+ +++++.+..+.+...-.. ..+.+++.++++.+.+.++.
T Consensus 79 ~g-~~~i~i~~~~-s~~~~~~~~~~~~~~~~~~~~~~v-~~ak~~g~~v~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~ 153 (237)
T PF00682_consen 79 AG-IDIIRIFISV-SDLHIRKNLNKSREEALERIEEAV-KYAKELGYEVAFGCEDAS--RTDPEELLELAEALAEAGADI 153 (237)
T ss_dssp TT-SSEEEEEEET-SHHHHHHHTCSHHHHHHHHHHHHH-HHHHHTTSEEEEEETTTG--GSSHHHHHHHHHHHHHHT-SE
T ss_pred cc-CCEEEecCcc-cHHHHHHhhcCCHHHHHHHHHHHH-HHHHhcCCceEeCccccc--cccHHHHHHHHHHHHHcCCeE
Confidence 22 1223343332 443333322222223355555555 566777888866554332 23567888999999888876
Q ss_pred EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCC-eE--EEeecccccc
Q 022752 213 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN-IR--TTVRKQMGQD 259 (292)
Q Consensus 213 v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g-~~--v~ir~~~g~~ 259 (292)
+.+-.-.. ...++++..+.+.+++..+ .+ +...+..|.-
T Consensus 154 i~l~Dt~G--------~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla 195 (237)
T PF00682_consen 154 IYLADTVG--------IMTPEDVAELVRALREALPDIPLGFHAHNDLGLA 195 (237)
T ss_dssp EEEEETTS---------S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-H
T ss_pred EEeeCccC--------CcCHHHHHHHHHHHHHhccCCeEEEEecCCccch
Confidence 55532211 1345566666666654444 33 4455555544
No 242
>PRK09389 (R)-citramalate synthase; Provisional
Probab=30.88 E-value=5.1e+02 Score=25.23 Aligned_cols=179 Identities=12% Similarity=0.044 Sum_probs=91.4
Q ss_pred cCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCc
Q 022752 59 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138 (292)
Q Consensus 59 ~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~ 138 (292)
+..++.++-++.+....+ .+++.|-+. =|..+... .+.++.+.+.+.+ ..+..-+.....++....+.+ ..
T Consensus 18 g~~~s~e~K~~ia~~L~~-~Gv~~IE~G---~p~~~~~d-~e~v~~i~~~~~~---~~i~a~~r~~~~di~~a~~~g-~~ 88 (488)
T PRK09389 18 GVSLTPEEKLEIARKLDE-LGVDVIEAG---SAITSEGE-REAIKAVTDEGLN---AEICSFARAVKVDIDAALECD-VD 88 (488)
T ss_pred CCCcCHHHHHHHHHHHHH-cCCCEEEEe---CCcCCHHH-HHHHHHHHhcCCC---cEEEeecccCHHHHHHHHhCC-cC
Confidence 456788887776666544 377766653 35555333 4667777665421 334333333333344444443 12
Q ss_pred eEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEe
Q 022752 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIP 217 (292)
Q Consensus 139 ~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p 217 (292)
.+.+.+...+-+....+ +......++.+.+.+ +++++.+..+.+... ...-.+.+.+.++++.+.+.|.. +.+-.
T Consensus 89 ~v~i~~~~Sd~h~~~~l-~~s~~e~l~~~~~~v-~~ak~~g~~v~~~~e--d~~r~~~~~l~~~~~~~~~~Ga~~i~l~D 164 (488)
T PRK09389 89 SVHLVVPTSDLHIEYKL-KKTREEVLETAVEAV-EYAKDHGLIVELSGE--DASRADLDFLKELYKAGIEAGADRICFCD 164 (488)
T ss_pred EEEEEEccCHHHHHHHh-CCCHHHHHHHHHHHH-HHHHHCCCEEEEEEe--eCCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 34455544333333333 222334455666666 567777776666543 23333466777888888877765 55521
Q ss_pred cCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeE--EEeeccccc
Q 022752 218 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR--TTVRKQMGQ 258 (292)
Q Consensus 218 ~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~--v~ir~~~g~ 258 (292)
-. . ...+.++..+.+.+++..+++ +...+..|.
T Consensus 165 Tv------G--~~~P~~~~~lv~~l~~~~~v~l~~H~HND~Gl 199 (488)
T PRK09389 165 TV------G--ILTPEKTYELFKRLSELVKGPVSIHCHNDFGL 199 (488)
T ss_pred CC------C--CcCHHHHHHHHHHHHhhcCCeEEEEecCCccH
Confidence 11 1 134455555555554233333 334444443
No 243
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=30.88 E-value=3.6e+02 Score=23.44 Aligned_cols=114 Identities=10% Similarity=0.017 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhC-CCce-EEEEecCCChHHHhhhcCcccCccHHHHHHHHHH
Q 022752 96 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL-PGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 173 (292)
Q Consensus 96 ~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~-~~~~-l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~ 173 (292)
.++.+-+..+++.+ ...+++-++- ..+..+.++.. ...+ +-|.+..+.++..+...+..-....+.+.+.++
T Consensus 55 ~~i~~e~~~~~~~~----~vivnv~~~~-~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~- 128 (231)
T TIGR00736 55 SYIIEQIKKAESRA----LVSVNVRFVD-LEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLT- 128 (231)
T ss_pred HHHHHHHHHHhhcC----CEEEEEecCC-HHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHH-
Confidence 45777777776543 2445554432 12222222221 1233 336666777666543322221223444444442
Q ss_pred HHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecC
Q 022752 174 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFN 219 (292)
Q Consensus 174 ~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~ 219 (292)
.+++.+.++.+.+-+ +. ...+..++++.+.+.|+. +.+....
T Consensus 129 av~~~~~PVsvKiR~--~~--~~~~~~~~a~~l~~aGad~i~Vd~~~ 171 (231)
T TIGR00736 129 KMKELNKPIFVKIRG--NC--IPLDELIDALNLVDDGFDGIHVDAMY 171 (231)
T ss_pred HHHcCCCcEEEEeCC--CC--CcchHHHHHHHHHHcCCCEEEEeeCC
Confidence 333456777766553 22 223566888888888876 6554433
No 244
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=30.60 E-value=71 Score=25.38 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=17.8
Q ss_pred ChHHHHHHHHHHHhhCCcEEEEEe
Q 022752 194 DEEQHAHQLGKLLETFQVVVNLIP 217 (292)
Q Consensus 194 d~~~~l~~l~~~l~~~~~~v~l~p 217 (292)
++.+.+.++.+.+.+.++.++++|
T Consensus 152 ~~~~~i~~ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 152 SEEEQIKRIIEELENHGVRVRVVP 175 (175)
T ss_dssp S-HHHHHHHHHHHHTTT-EEEE--
T ss_pred cCHHHHHHHHHHHHhCCCEEEEeC
Confidence 467789999999999999988876
No 245
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=29.98 E-value=1.2e+02 Score=28.64 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHH
Q 022752 97 ALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176 (292)
Q Consensus 97 ~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~ 176 (292)
.+.+.++++...||+. ..+.++.||... ...+.+.+....+.||+-..|.++ +..+.+- .+.++++
T Consensus 103 aVl~~~~~Le~~g~~V--tyl~V~~~G~v~-~e~L~~al~~~T~LVSim~aNnE~----------G~IQpI~-ei~~i~k 168 (386)
T COG1104 103 AVLNTCRYLERQGFEV--TYLPVDSNGLVD-LEQLEEALRPDTILVSIMHANNET----------GTIQPIA-EIGEICK 168 (386)
T ss_pred HHHHHHHHHHhcCCeE--EEeCCCCCCeEc-HHHHHHhcCCCceEEEEEecccCe----------eecccHH-HHHHHHH
Confidence 3556666664445432 344556666532 234444432234556776655553 2333333 3336777
Q ss_pred hhCCeEEEEE
Q 022752 177 NSQQKIFIEY 186 (292)
Q Consensus 177 ~~~~~v~i~~ 186 (292)
+.++.+++-.
T Consensus 169 ~~~i~fHvDA 178 (386)
T COG1104 169 ERGILFHVDA 178 (386)
T ss_pred HcCCeEEEeh
Confidence 7775555443
No 246
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=29.86 E-value=2.3e+02 Score=25.58 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHhhcc-CCcceEEEe-cCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 022752 60 SNLSSGEIVEQLVHASRL-SNIRNVVFM-GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~-~~~~~I~fs-G~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG 123 (292)
-..||+++.+...+..+. ..+-++..- ..|.|++.++...+.+..+|+.. ....+.++|-+
T Consensus 24 lP~TP~qIA~~a~~aa~AGAai~HlHvRp~dG~pt~d~~~yr~~l~rIr~~~---~D~vin~ttg~ 86 (298)
T COG3246 24 LPVTPDQIASDAIAAAKAGAAILHLHVRPEDGRPTLDPEAYREVLERIRAAV---GDAVINLTTGE 86 (298)
T ss_pred CCCCHHHHHHHHHHHHhcCcceEEEEecCCCCCcccCHHHHHHHHHHHHccC---CCeEEEecccc
Confidence 357899999988875442 234455554 34999999888889999999982 13667777665
No 247
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=29.46 E-value=2.2e+02 Score=26.30 Aligned_cols=63 Identities=8% Similarity=0.080 Sum_probs=45.4
Q ss_pred EeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEE
Q 022752 188 MLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251 (292)
Q Consensus 188 l~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ 251 (292)
.-|..-++++.+.+.++.+++.+.. +....|.|-..-..|+.+..+.+..+.+..+ +.|+++.
T Consensus 98 AGPCsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~-~~Gl~v~ 161 (335)
T PRK08673 98 AGPCSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEARE-ETGLPIV 161 (335)
T ss_pred EecCccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHH-HcCCcEE
Confidence 3455667888999999999988766 4444555543335677777888888888888 7888753
No 248
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=29.40 E-value=3.9e+02 Score=24.11 Aligned_cols=82 Identities=16% Similarity=0.237 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcC
Q 022752 167 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 246 (292)
Q Consensus 167 vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~ 246 (292)
+.+.+|+..+++..-+. ++|.-++| .+-+.+|.+...+-++.|+++ .+...+..|.+... +.
T Consensus 135 IKE~vR~~I~~A~kVIA---IVMD~FTD-~dIf~DLleAa~kR~VpVYiL-------------LD~~~~~~Fl~Mc~-~~ 196 (284)
T PF07894_consen 135 IKEVVRRMIQQAQKVIA---IVMDVFTD-VDIFCDLLEAANKRGVPVYIL-------------LDEQNLPHFLEMCE-KL 196 (284)
T ss_pred HHHHHHHHHHHhcceeE---EEeecccc-HHHHHHHHHHHHhcCCcEEEE-------------echhcChHHHHHHH-HC
Confidence 44555555555544333 33443444 456777777766667776664 12233444555555 33
Q ss_pred Ce------EEEeeccccccccccccc
Q 022752 247 NI------RTTVRKQMGQDISGACGQ 266 (292)
Q Consensus 247 g~------~v~ir~~~g~~~~~~c~~ 266 (292)
++ ...||...|.+++...|+
T Consensus 197 ~v~~~~~~nmrVRsv~G~~y~~rsg~ 222 (284)
T PF07894_consen 197 GVNLQHLKNMRVRSVTGCTYYSRSGK 222 (284)
T ss_pred CCChhhcCCeEEEEecCCeeecCCCC
Confidence 33 356888889888877773
No 249
>TIGR03586 PseI pseudaminic acid synthase.
Probab=29.31 E-value=4.5e+02 Score=24.14 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=46.7
Q ss_pred HhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCc-EEEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEE-Eee
Q 022752 176 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT-TVR 253 (292)
Q Consensus 176 ~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~-~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v-~ir 253 (292)
.+.+.++.+. .|. .+.+++...++++...|. ++-++--. ..|+.+..+-=......+++.++++| ..-
T Consensus 131 a~~gkPvils----tG~-~t~~Ei~~Av~~i~~~g~~~i~LlhC~-----s~YP~~~~~~nL~~i~~lk~~f~~pVG~SD 200 (327)
T TIGR03586 131 AKTGKPIIMS----TGI-ATLEEIQEAVEACREAGCKDLVLLKCT-----SSYPAPLEDANLRTIPDLAERFNVPVGLSD 200 (327)
T ss_pred HhcCCcEEEE----CCC-CCHHHHHHHHHHHHHCCCCcEEEEecC-----CCCCCCcccCCHHHHHHHHHHhCCCEEeeC
Confidence 3456666654 343 367899999999987665 35554321 22322222221223334443567777 445
Q ss_pred cccccccc------cccccccccCcCcc
Q 022752 254 KQMGQDIS------GACGQLVVNLPDKI 275 (292)
Q Consensus 254 ~~~g~~~~------~~c~~~~~~~~~~~ 275 (292)
+..|..++ +.| .+.+|++--
T Consensus 201 Ht~G~~~~~aAva~GA~--iIEkH~tld 226 (327)
T TIGR03586 201 HTLGILAPVAAVALGAC--VIEKHFTLD 226 (327)
T ss_pred CCCchHHHHHHHHcCCC--EEEeCCChh
Confidence 66665543 233 667776543
No 250
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=29.16 E-value=5.1e+02 Score=24.64 Aligned_cols=128 Identities=13% Similarity=0.206 Sum_probs=72.7
Q ss_pred CceEEEEecCCChHHHhh--hcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEE
Q 022752 137 GLNLAVSLHAPVQDVRCQ--IMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVN 214 (292)
Q Consensus 137 ~~~l~iSld~~~~~~~~~--i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~ 214 (292)
..++.+.+|....+.|+. +.-.....+-++.++.+.++.+++.+ +.+ -.++ ++.+++.++.+.+.+|-.++
T Consensus 233 g~~i~~alD~Aasefy~~~~Y~~~~~~~~~~e~i~~~~~Lv~~Ypi-vsi----EDpl--~E~Dweg~~~lt~~~g~kvq 305 (423)
T COG0148 233 GEDIALALDVAASEFYKDGKYVLEGESLTSEELIEYYLELVKKYPI-VSI----EDPL--SEDDWEGFAELTKRLGDKVQ 305 (423)
T ss_pred CcceeeeehhhhhhhccCCeeeecCcccCHHHHHHHHHHHHHhCCE-EEE----cCCC--CchhHHHHHHHHHhhCCeEE
Confidence 456888888887777765 32222345666778888787777652 233 2332 45677888887777775544
Q ss_pred EE-----ecCCCC-------CCCC---cCC---CcHHHHHHHHHHHHhcCCeEEEeecccccc---------cccccccc
Q 022752 215 LI-----PFNPIG-------SVSQ---FRT---SSDDKVSSFQKILRGSYNIRTTVRKQMGQD---------ISGACGQL 267 (292)
Q Consensus 215 l~-----p~~p~~-------~~~~---~~~---~~~e~l~~~~~~l~~~~g~~v~ir~~~g~~---------~~~~c~~~ 267 (292)
+. --+|.. ...+ .++ =+--+...+.+.++ ..|+...+-++.|.+ +.-+|+|+
T Consensus 306 ivGDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~-~~gy~~viSHRSGETeD~tIAdLAVa~~agqI 384 (423)
T COG0148 306 IVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAK-DAGYTAVISHRSGETEDTTIADLAVATNAGQI 384 (423)
T ss_pred EECCcceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHH-HCCCeEEEecCCCCcccchHHHHHHHhCCCee
Confidence 43 112210 0001 011 12233334555566 689988888776654 44788887
Q ss_pred cccCc
Q 022752 268 VVNLP 272 (292)
Q Consensus 268 ~~~~~ 272 (292)
..-.|
T Consensus 385 KTGs~ 389 (423)
T COG0148 385 KTGSL 389 (423)
T ss_pred ecCCC
Confidence 55443
No 251
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=29.03 E-value=4.8e+02 Score=24.33 Aligned_cols=141 Identities=13% Similarity=0.131 Sum_probs=68.7
Q ss_pred Ccccc-CHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCceEE-EEecCCChHHHhhhcCcccCccHHH
Q 022752 89 GEPLN-NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEK 166 (292)
Q Consensus 89 GEPll-~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~-iSld~~~~~~~~~i~~~~~~~~~~~ 166 (292)
|=-|+ +++.+.++++.+++. ++.+ +.+.|-.+.-+.....++......... +.+++-+.+....-.++ .+++
T Consensus 119 Ga~L~~~~eLv~e~V~~v~~~-l~~p-Vs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~p---ad~~- 192 (358)
T KOG2335|consen 119 GAFLMDNPELVGEMVSAVRAN-LNVP-VSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGP---ADWE- 192 (358)
T ss_pred cceeccCHHHHHHHHHHHHhh-cCCC-eEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCC---cCHH-
Confidence 34444 378889999999987 3333 566666665443322222222122232 57777666665432222 2232
Q ss_pred HHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCC--CCcCCCcHHHHHHHHHHHH
Q 022752 167 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSV--SQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 167 vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~--~~~~~~~~e~l~~~~~~l~ 243 (292)
.++++++.+.+ +++. .-|.-.+.+++....+.-...|+. -.-.=+||.- . ..+..+..+-+.++.++..
T Consensus 193 ~i~~v~~~~~~--ipvi-----aNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~-F~~~~~~~~~~~~~~~~l~~~~ 264 (358)
T KOG2335|consen 193 AIKAVRENVPD--IPVI-----ANGNILSLEDVERCLKYTGADGVMSARGLLYNPAL-FLTAGYGPTPWGCVEEYLDIAR 264 (358)
T ss_pred HHHHHHHhCcC--CcEE-----eeCCcCcHHHHHHHHHHhCCceEEecchhhcCchh-hccCCCCCCHHHHHHHHHHHHH
Confidence 22223222111 3333 223223455666666555444554 1222245531 2 4556666777777766666
No 252
>PTZ00175 diphthine synthase; Provisional
Probab=28.76 E-value=1.5e+02 Score=26.45 Aligned_cols=36 Identities=8% Similarity=0.058 Sum_probs=27.8
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 022752 81 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123 (292)
Q Consensus 81 ~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG 123 (292)
+.+.+++ |+|++. ..-.+++..+++.| ..+.+..+-
T Consensus 78 ~Vv~L~~-GDP~i~-~t~~~l~~~~~~~g-----i~vevIPGv 113 (270)
T PTZ00175 78 NVAFLVV-GDPFCA-TTHTDLYLRAKKKG-----IEVEVIHNA 113 (270)
T ss_pred CEEEEEC-CCCCcc-CCHHHHHHHHHHCC-----CcEEEECCc
Confidence 4677888 999996 55678888998887 667777653
No 253
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=28.70 E-value=4.1e+02 Score=23.47 Aligned_cols=75 Identities=17% Similarity=0.296 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHhhCCcE-EEEE-ecCCCCCCCCcCCCcHHHHHH-HHHHHHhcCCeEEEeeccc---cccccccccccc
Q 022752 195 EEQHAHQLGKLLETFQVV-VNLI-PFNPIGSVSQFRTSSDDKVSS-FQKILRGSYNIRTTVRKQM---GQDISGACGQLV 268 (292)
Q Consensus 195 ~~~~l~~l~~~l~~~~~~-v~l~-p~~p~~~~~~~~~~~~e~l~~-~~~~l~~~~g~~v~ir~~~---g~~~~~~c~~~~ 268 (292)
+.++..++++.+++.|+. +-++ ||+. .++.+++.. +++++. ..++++.+-+.+ |.++....-.-+
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~~--------~~s~~~l~~y~~~ia~-~~~~pi~iYn~P~~tg~~ls~~~l~~L 151 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYYF--------KPSQEELIDYFRAIAD-ATDLPIIIYNNPARTGNDLSPETLARL 151 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTSS--------SCCHHHHHHHHHHHHH-HSSSEEEEEEBHHHHSSTSHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCceEEEEeccccc--------cchhhHHHHHHHHHHh-hcCCCEEEEECCCccccCCCHHHHHHH
Confidence 556777888888888876 4444 3221 234555444 444554 667776555433 666554433334
Q ss_pred ccCcCcccCC
Q 022752 269 VNLPDKISAK 278 (292)
Q Consensus 269 ~~~~~~~~~~ 278 (292)
.++|.-+.-|
T Consensus 152 ~~~~nv~giK 161 (289)
T PF00701_consen 152 AKIPNVVGIK 161 (289)
T ss_dssp HTSTTEEEEE
T ss_pred hcCCcEEEEE
Confidence 4466544444
No 254
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=28.49 E-value=4e+02 Score=23.19 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=43.1
Q ss_pred HHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEE-EecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh
Q 022752 100 EAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV-SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178 (292)
Q Consensus 100 ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~i-Sld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~ 178 (292)
.+++.+|+.. .+-++|-+.. +.+|.+.+ .-.+.| +++-.+ +..++.++..+.++...+
T Consensus 46 kIIkkLK~rd------gi~~dTP~~a--L~klk~~g-y~eviiQ~lhiIp------------G~EyEklvr~V~~~~~dF 104 (265)
T COG4822 46 KIIKKLKERD------GIDFDTPIQA--LNKLKDQG-YEEVIIQPLHIIP------------GIEYEKLVREVNKYSNDF 104 (265)
T ss_pred HHHHHHHhhc------CcccCCHHHH--HHHHHHcc-chheeeeeeeecC------------chHHHHHHHHHHHHhhhh
Confidence 3567777761 2556665433 44555544 233443 554322 234455555554554444
Q ss_pred CCeEEEEEEEeCCCCChHHHHHHHHHHHhhC
Q 022752 179 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 209 (292)
Q Consensus 179 ~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~ 209 (292)
. ++.+--+++-..||.+.-++++.+.+-.+
T Consensus 105 ~-~lkig~PlLy~k~DYe~~v~aik~~~ppl 134 (265)
T COG4822 105 K-RLKIGRPLLYYKNDYEICVEAIKDQIPPL 134 (265)
T ss_pred h-eeecCCceeechhhHHHHHHHHHHhcCCc
Confidence 3 24444444444456555555555555433
No 255
>PF02113 Peptidase_S13: D-Ala-D-Ala carboxypeptidase 3 (S13) family; InterPro: IPR000667 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This family of serine peptidases belong to MEROPS peptidase family S13 (D-Ala-D-Ala carboxypeptidase C, clan SE). The predicted active site residues for members of this family and family S12 occur in the motif SXXK. D-Ala-D-Ala carboxypeptidase C is involved in the metabolism of cell components []; it is synthesised with a leader peptide to target it to the cell membrane []. After cleavage of the leader peptide, the enzyme is retained in the membrane by a C-terminal anchor []. There are three families of serine-type D-Ala-D-Ala peptidase (designated S11, S12 and S13), which are also known as low molecular weight penicillin-binding proteins []. Family S13 comprises D-Ala-D-Ala peptidases that have sufficient sequence similarity around their active sites to assume a distant evolutionary relationship to other clan members; members of the S13 family also bind penicillin and have D-amino-peptidase activity. Proteases of family S11 have exclusive D-Ala-D-Ala peptidase activity, while some members of S12 are C beta-lactamases [].; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3F_B 3A3E_B 3A3D_A 3A3I_B 2Y59_C 1W8Q_A 3ZVT_B 3ZVW_B 2VGJ_B 1W79_D ....
Probab=28.48 E-value=86 Score=30.12 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=29.9
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 81 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 81 ~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
..+.|-|.|+|+|..+.+.++++.+++.|+.--.-.+.++..
T Consensus 82 G~L~l~G~GDP~l~~~~l~~la~~l~~~Gi~~I~g~i~~D~s 123 (444)
T PF02113_consen 82 GDLYLKGGGDPSLTSEDLWALAAQLKAAGIKRITGDIILDDS 123 (444)
T ss_dssp SEEEEEECSBTTBCHHHHHHHHHHHHHTT-SEESSEEEEETT
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHHHcCCCeEeeEEEEECc
Confidence 367777889999999999999999999873211124455443
No 256
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=28.23 E-value=3e+02 Score=25.50 Aligned_cols=85 Identities=16% Similarity=0.150 Sum_probs=48.3
Q ss_pred EEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHH
Q 022752 119 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQH 198 (292)
Q Consensus 119 l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~ 198 (292)
+.+-|.+..+....+.+ ...+.+..+..+...+. ...+.+++.+.+ ++++++|.++.+.+..+. .++..+.
T Consensus 10 l~pag~l~~l~~ai~~G-ADaVY~G~~~~~~R~~a------~nfs~~~l~e~i-~~ah~~gkk~~V~~N~~~-~~~~~~~ 80 (347)
T COG0826 10 LAPAGNLEDLKAAIAAG-ADAVYIGEKEFGLRRRA------LNFSVEDLAEAV-ELAHSAGKKVYVAVNTLL-HNDELET 80 (347)
T ss_pred ecCCCCHHHHHHHHHcC-CCEEEeCCccccccccc------ccCCHHHHHHHH-HHHHHcCCeEEEEecccc-ccchhhH
Confidence 44455555444444444 23355655432222221 235777877777 788888887554443332 2446666
Q ss_pred HHHHHHHHhhCCcE
Q 022752 199 AHQLGKLLETFQVV 212 (292)
Q Consensus 199 l~~l~~~l~~~~~~ 212 (292)
+.+..+.+.++|+.
T Consensus 81 ~~~~l~~l~e~GvD 94 (347)
T COG0826 81 LERYLDRLVELGVD 94 (347)
T ss_pred HHHHHHHHHHcCCC
Confidence 77888888877764
No 257
>PRK11113 D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional
Probab=28.01 E-value=74 Score=30.87 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=29.3
Q ss_pred eEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 82 NVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 82 ~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
.+.+-|.|+|+|..+.|.++++.+++.|+.--.-.+.++.+
T Consensus 100 dL~i~G~GDPtL~~~~L~~la~~l~~~GI~~I~G~lv~D~s 140 (477)
T PRK11113 100 DLIARFGGDPTLTRQDLRNMVATLKKSGVKQIDGNLLIDTS 140 (477)
T ss_pred eEEEEEecCCCCCHHHHHHHHHHHHHcCCcEEeeeEEEECc
Confidence 46777779999998899999999999873211124555544
No 258
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=27.88 E-value=5.2e+02 Score=24.35 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHhhccCCc---ceEEEecCCccccCHHH-----HHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhh
Q 022752 63 SSGEIVEQLVHASRLSNI---RNVVFMGMGEPLNNYAA-----LVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 134 (292)
Q Consensus 63 ~~eei~~~i~~~~~~~~~---~~I~fsG~GEPll~~~~-----i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~ 134 (292)
+.++.-+.+.+.....++ +...+.|.++=+ ++. ..++++.+++.| +.+.+.++|.|+...+.++..+
T Consensus 91 ~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~--~~k~~~~g~~df~~kak~eG---kIr~~GFSfHgs~e~~~~iv~a 165 (391)
T COG1453 91 DREDMERIFNEQLEKLGTDYIDYYLIHGLNTET--WEKIERLGVFDFLEKAKAEG---KIRNAGFSFHGSTEVFKEIVDA 165 (391)
T ss_pred CHHHHHHHHHHHHHHhCCchhhhhhhccccHHH--HHHHHccChHHHHHHHHhcC---cEEEeeecCCCCHHHHHHHHhc
Confidence 344544444444333344 444566655522 333 378899999887 3478889999988777788877
Q ss_pred CCCceE-EEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCC--hHHHHHHHHHHHh
Q 022752 135 LPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND--EEQHAHQLGKLLE 207 (292)
Q Consensus 135 ~~~~~l-~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd--~~~~l~~l~~~l~ 207 (292)
.+ .++ ++-.+-.+.+.. ...+++ +++.+.+..|.|--++-.|--- --+.+++|.+-+.
T Consensus 166 ~~-~dfvqlq~ny~d~~n~-------------~~~~~l-~~A~~~~~gI~IMeP~~gG~l~~~vP~~~~~l~~~~~ 226 (391)
T COG1453 166 YP-WDFVQLQYNYIDQKNQ-------------AGTEGL-KYAASKGLGIFIMEPLDGGGLLYNVPEKLEELCRPAS 226 (391)
T ss_pred CC-cceEEeeeeeeccchh-------------cccHHH-HHHHhCCCcEEEEeeCCCCCcccCCCHHHHHHHHhcC
Confidence 75 543 344433332221 113566 5677778888877776555211 1245555555443
No 259
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=27.75 E-value=5e+02 Score=24.99 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=22.0
Q ss_pred EEeCCCCChHHHHHHHHHHHhhCCcEEEEEe
Q 022752 187 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 217 (292)
Q Consensus 187 vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p 217 (292)
.++++.+. ..++.++.++|..+|+.++.+|
T Consensus 170 Nii~~~~~-~gD~~eik~lL~~~Gl~vn~l~ 199 (457)
T TIGR02932 170 NVFPGWVN-PGDVVLLKHYFSEMGVDANILM 199 (457)
T ss_pred EEECCCCC-hHHHHHHHHHHHHcCCCEEEEe
Confidence 34566543 5688999999999998877653
No 260
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=27.28 E-value=1.2e+02 Score=25.78 Aligned_cols=52 Identities=21% Similarity=0.423 Sum_probs=30.6
Q ss_pred CCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhc---cCCcceEEEecCCccccC
Q 022752 41 QVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSNIRNVVFMGMGEPLNN 94 (292)
Q Consensus 41 t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~---~~~~~~I~fsG~GEPll~ 94 (292)
+.||-..|..|.-........++.++ ++.+..... ...-..+.|.- |||.-+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~L~~~~~~~~~~~kge~l~~~-Gd~~~~ 57 (235)
T PRK11161 3 SGGCAIHCQDCSISQLCIPFTLNEHE-LDQLDNIIERKKPIQKGQTLFKA-GDELKS 57 (235)
T ss_pred CCCCCCCcccccccccccccCCCHHH-HHHHHHhhhhceeecCCCEeECC-CCCcce
Confidence 37999999999876544444576555 444444321 12234556666 666443
No 261
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.22 E-value=4.2e+02 Score=23.08 Aligned_cols=71 Identities=10% Similarity=0.089 Sum_probs=39.4
Q ss_pred HHhhccCCcceEEEecCCccccC----------HHHHHHHHHHHhCCCCCCCCCeEEEEcCCc-----hhhHHHHhhhCC
Q 022752 72 VHASRLSNIRNVVFMGMGEPLNN----------YAALVEAVRIMTGLPFQVSPKRITVSTVGI-----VHAINKFHSDLP 136 (292)
Q Consensus 72 ~~~~~~~~~~~I~fsG~GEPll~----------~~~i~ell~~~~~~g~~~~~~~i~l~TNG~-----~~~~~~l~~~~~ 136 (292)
.+.....+...|++.| +.+... .+.+.++++++++.| +.+.+.+... ..+..++++...
T Consensus 105 i~~a~~lG~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~G-----V~i~iE~~~~~~~~~~~~~~~ll~~v~ 178 (283)
T PRK13209 105 IQLAQDLGIRVIQLAG-YDVYYEQANNETRRRFIDGLKESVELASRAS-----VTLAFEIMDTPFMNSISKALGYAHYLN 178 (283)
T ss_pred HHHHHHcCCCEEEECC-ccccccccHHHHHHHHHHHHHHHHHHHHHhC-----CEEEEeecCCcccCCHHHHHHHHHHhC
Confidence 3333345788888887 542211 234577788888878 7788887531 122445555432
Q ss_pred CceEEEEecCCC
Q 022752 137 GLNLAVSLHAPV 148 (292)
Q Consensus 137 ~~~l~iSld~~~ 148 (292)
.-.+.+.+|..+
T Consensus 179 ~~~lgl~~D~~h 190 (283)
T PRK13209 179 SPWFQLYPDIGN 190 (283)
T ss_pred CCccceEeccch
Confidence 223445555443
No 262
>PRK11024 colicin uptake protein TolR; Provisional
Probab=27.19 E-value=3.1e+02 Score=21.54 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
.+.+++...+........-..|.+.+ +.-..|..+.+++..+++.|+ .++.+.|.
T Consensus 85 v~~~~L~~~l~~~~~~~~~~~V~i~a--D~~~~~~~vv~vmd~~k~aG~----~~v~l~t~ 139 (141)
T PRK11024 85 LPEEQVVAEAKSRFKANPKTVFLIGG--AKDVPYDEIIKALNLLHSAGV----KSVGLMTQ 139 (141)
T ss_pred cCHHHHHHHHHHHHhhCCCceEEEEc--CCCCCHHHHHHHHHHHHHcCC----CeEEEEec
Confidence 56677766666643321223466665 666778899999999999984 46777664
No 263
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=26.94 E-value=1.5e+02 Score=26.11 Aligned_cols=35 Identities=6% Similarity=0.048 Sum_probs=25.9
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 81 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 81 ~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
+.+.+++ |+|++. ....++++.+++.+ ..+.+...
T Consensus 77 ~Vv~l~~-GDP~i~-~~~~~l~~~l~~~~-----i~vevIPG 111 (257)
T TIGR00522 77 DVALLVA-GDPMVA-TTHTDLKLEAKRKG-----IETRIIHG 111 (257)
T ss_pred CEEEEEC-CcCccc-CCHHHHHHHHHHCC-----CeEEEECc
Confidence 4667788 999995 66677888888776 56776644
No 264
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=26.59 E-value=5.9e+02 Score=24.55 Aligned_cols=168 Identities=10% Similarity=0.100 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCCc------cccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC-----ch--h
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGE------PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG-----IV--H 126 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE------Pll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG-----~~--~ 126 (292)
..++.++.++.+....+ .++..|-+.| |. .+++.+ =.|.++.+++.. +...+.+...| +. +
T Consensus 21 ~~~~t~dkl~ia~~Ld~-~Gv~~IE~~g-gatf~~~~~f~~e~-p~e~l~~l~~~~---~~~~l~~l~r~~N~~G~~~~p 94 (448)
T PRK12331 21 TRMTTEEMLPILEKLDN-AGYHSLEMWG-GATFDACLRFLNED-PWERLRKIRKAV---KKTKLQMLLRGQNLLGYRNYA 94 (448)
T ss_pred cccCHHHHHHHHHHHHH-cCCCEEEecC-CccchhhhccCCCC-HHHHHHHHHHhC---CCCEEEEEeccccccccccCc
Confidence 46778887776666544 4788999988 75 345422 235555555431 11344433332 21 1
Q ss_pred h------HHHHhhhCCCceE-EEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHH
Q 022752 127 A------INKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHA 199 (292)
Q Consensus 127 ~------~~~l~~~~~~~~l-~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l 199 (292)
+ +++..+.+ +++ .|. ++.++. +++.+.+ +++++.|..+.+.+...-+--.+.+.+
T Consensus 95 ddvv~~~v~~A~~~G--vd~irif-~~lnd~--------------~n~~~~v-~~ak~~G~~v~~~i~~t~~p~~~~~~~ 156 (448)
T PRK12331 95 DDVVESFVQKSVENG--IDIIRIF-DALNDV--------------RNLETAV-KATKKAGGHAQVAISYTTSPVHTIDYF 156 (448)
T ss_pred hhhHHHHHHHHHHCC--CCEEEEE-EecCcH--------------HHHHHHH-HHHHHcCCeEEEEEEeecCCCCCHHHH
Confidence 1 22223332 333 222 222222 1233455 566777776554433322222355678
Q ss_pred HHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEE--Eeecccccc
Q 022752 200 HQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT--TVRKQMGQD 259 (292)
Q Consensus 200 ~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v--~ir~~~g~~ 259 (292)
.++++.+.+.|+. +.+- -. .+. ..+.++..+.+.+++..++++ ......|..
T Consensus 157 ~~~a~~l~~~Gad~I~i~---Dt---~G~--l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA 211 (448)
T PRK12331 157 VKLAKEMQEMGADSICIK---DM---AGI--LTPYVAYELVKRIKEAVTVPLEVHTHATSGIA 211 (448)
T ss_pred HHHHHHHHHcCCCEEEEc---CC---CCC--CCHHHHHHHHHHHHHhcCCeEEEEecCCCCcH
Confidence 8888888888876 5552 11 122 345566666666664455554 333444443
No 265
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=26.58 E-value=4e+02 Score=25.25 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=65.5
Q ss_pred CcCCCCHHHHHHHHHHhhcc-CCcceEEEecC----Cccc----cCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhH
Q 022752 58 FKSNLSSGEIVEQLVHASRL-SNIRNVVFMGM----GEPL----NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAI 128 (292)
Q Consensus 58 ~~~~~~~eei~~~i~~~~~~-~~~~~I~fsG~----GEPl----l~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~ 128 (292)
.++..+++|..+.+..+... .+...|++.-. |++. +.++.....++.+++.|+ .+-+++|-+
T Consensus 62 PG~aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~~~d~~vdrd~~~p~hf~~w~~~Ak~~gl-----glDfNpn~F---- 132 (414)
T TIGR01748 62 PGKARTPSELRADLEKAMSLIPGKHRLNLHAIYLETDEPVSRDEIKPEHFKNWVEWAKANGL-----GLDFNPTCF---- 132 (414)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCceeeecccccCCCcccccccCcccHHHHHHHHHHcCC-----CcCcCcccC----
Confidence 34678899999888876442 23334444331 3111 114567789999999883 233444422
Q ss_pred HHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCC
Q 022752 129 NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 194 (292)
Q Consensus 129 ~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd 194 (292)
. .+.....+||-.+++++|+.+.. .....++-...+.++.|.+...++-+-.|.|+
T Consensus 133 ----s-h~~~k~G~SLshpD~~iR~fwI~-----H~~~c~~I~~~fg~~lGs~~l~niWipDG~kd 188 (414)
T TIGR01748 133 ----S-HPLSADGFTLSHPDDSIRQFWID-----HCKASRRISEYFGKELGTPSVMNIWIPDGMKD 188 (414)
T ss_pred ----C-CccccCCCcccCCCHHHHHHHHH-----HHHHHHHHHHHHHHHhCCchhheeecCCCCCC
Confidence 1 12334446888999999886521 11122222222255566666657766667665
No 266
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.35 E-value=2.5e+02 Score=24.72 Aligned_cols=56 Identities=18% Similarity=0.094 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccccCHH-HHHHHHHHHhCCCCCCCCCeEEEEcCCchhh
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYA-ALVEAVRIMTGLPFQVSPKRITVSTVGIVHA 127 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~-~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~ 127 (292)
+.+..+-+.+.-+.. .++.+-|.+ |-..+.++ .|.+.++.+++.| |.+.|-|++.+
T Consensus 22 lg~~~~~dlLe~ag~--yID~~K~g~-Gt~~l~~~~~l~eki~l~~~~g-------V~v~~GGtl~E 78 (244)
T PF02679_consen 22 LGLRYLEDLLESAGD--YIDFLKFGW-GTSALYPEEILKEKIDLAHSHG-------VYVYPGGTLFE 78 (244)
T ss_dssp --HHHHHHHHHHHGG--G-SEEEE-T-TGGGGSTCHHHHHHHHHHHCTT--------EEEE-HHHHH
T ss_pred CCHHHHHHHHHHhhh--hccEEEecC-ceeeecCHHHHHHHHHHHHHcC-------CeEeCCcHHHH
Confidence 445553333333443 478999998 98888643 4788999999887 78888887654
No 267
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=26.14 E-value=3.6e+02 Score=23.95 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=13.3
Q ss_pred cCHHHHHHHHHHHhCCC
Q 022752 93 NNYAALVEAVRIMTGLP 109 (292)
Q Consensus 93 l~~~~i~ell~~~~~~g 109 (292)
++++.+.++++++.+.|
T Consensus 19 iD~~~l~~~i~~l~~~G 35 (292)
T PRK03170 19 VDFAALRKLVDYLIANG 35 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 66777888888888776
No 268
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=26.05 E-value=2.8e+02 Score=20.63 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhCCcE-EEEEecCCCCC---CCCcCCCcHHHHHHHHHHHHhcCCeEEEee
Q 022752 196 EQHAHQLGKLLETFQVV-VNLIPFNPIGS---VSQFRTSSDDKVSSFQKILRGSYNIRTTVR 253 (292)
Q Consensus 196 ~~~l~~l~~~l~~~~~~-v~l~p~~p~~~---~~~~~~~~~e~l~~~~~~l~~~~g~~v~ir 253 (292)
...++++++.+...|+. |.++|+.-... ..+.+. ++-+.-+..++ ..|+.+...
T Consensus 41 ~P~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~Dipg---e~~~SW~~~l~-~~g~~v~~~ 98 (103)
T cd03413 41 YPGLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHNDMAG---DEPDSWKSILE-AAGIKVETV 98 (103)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEehhheecccchhcCCC---CCchhHHHHHH-HCCCeeEEE
Confidence 34577777777777776 88999865421 112222 12335667777 668876543
No 269
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=25.94 E-value=4.2e+02 Score=24.49 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHH
Q 022752 164 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 203 (292)
Q Consensus 164 ~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~ 203 (292)
.+++++-++.+.+++|..++++ ....|..-+++.+++|.
T Consensus 93 ieR~~~~ir~LK~efG~~fHiH-LYT~g~~~~~e~l~~L~ 131 (353)
T COG2108 93 IERTVEYIRLLKDEFGEDFHIH-LYTTGILATEEALKALA 131 (353)
T ss_pred HHHHHHHHHHHHHhhccceeEE-EeeccccCCHHHHHHHH
Confidence 3455566654445566666654 22444445554444443
No 270
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=25.81 E-value=1.3e+02 Score=26.12 Aligned_cols=38 Identities=11% Similarity=0.088 Sum_probs=24.1
Q ss_pred HHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhC
Q 022752 67 IVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG 107 (292)
Q Consensus 67 i~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~ 107 (292)
+.+.+.+... .+-+.+.+++ |+|+++ .....+++.+.+
T Consensus 87 ~~~~i~~~~~-~G~~Vv~L~~-GDP~iy-st~~~l~~~l~~ 124 (241)
T PRK05990 87 SAEAVAAHLD-AGRDVAVICE-GDPFFY-GSYMYLHDRLAP 124 (241)
T ss_pred HHHHHHHHHH-CCCeEEEEeC-CCcHHH-hHHHHHHHHHhc
Confidence 3344444333 2446777888 999995 666677777754
No 271
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=25.68 E-value=2.2e+02 Score=20.74 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=12.6
Q ss_pred CceEEEEEcCCCCCcCCcCcCC
Q 022752 32 PRSTLCISSQVGCKMGCNFCAT 53 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~ 53 (292)
.++++|...+..++ .|+||..
T Consensus 12 ~~Vvvf~kg~~~~~-~Cp~C~~ 32 (97)
T TIGR00365 12 NPVVLYMKGTPQFP-QCGFSAR 32 (97)
T ss_pred CCEEEEEccCCCCC-CCchHHH
Confidence 45777764332333 4889976
No 272
>PF08576 DUF1764: Eukaryotic protein of unknown function (DUF1764); InterPro: IPR013885 This entry consists of eukaryotic proteins of unknown function, including many hypothetical proteins.
Probab=25.55 E-value=38 Score=25.34 Aligned_cols=12 Identities=25% Similarity=0.791 Sum_probs=9.8
Q ss_pred CCCCCcCCcCcC
Q 022752 41 QVGCKMGCNFCA 52 (292)
Q Consensus 41 t~gCNl~C~yC~ 52 (292)
|.-|||.|-=|+
T Consensus 91 T~~CPFDC~CCF 102 (102)
T PF08576_consen 91 TPLCPFDCDCCF 102 (102)
T ss_pred CCCCCCcCCCCC
Confidence 356999999886
No 273
>PF06265 DUF1027: Protein of unknown function (DUF1027); InterPro: IPR009370 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2KL5_A.
Probab=25.36 E-value=26 Score=25.47 Aligned_cols=9 Identities=33% Similarity=1.143 Sum_probs=4.7
Q ss_pred CCCCcCCcC
Q 022752 42 VGCKMGCNF 50 (292)
Q Consensus 42 ~gCNl~C~y 50 (292)
.-||+.|+|
T Consensus 74 EyCNFGcaY 82 (86)
T PF06265_consen 74 EYCNFGCAY 82 (86)
T ss_dssp HSS-SS--E
T ss_pred HHccCCCce
Confidence 459999987
No 274
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=25.04 E-value=5.5e+02 Score=24.62 Aligned_cols=93 Identities=14% Similarity=0.202 Sum_probs=55.4
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCC-CCCc------------CC----CcHHHHHHHHHHHH
Q 022752 182 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGS-VSQF------------RT----SSDDKVSSFQKILR 243 (292)
Q Consensus 182 v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~-~~~~------------~~----~~~e~l~~~~~~l~ 243 (292)
+.+++++.+-... .++.++..+.+++.|.+ |++.|+.-.|. .+.| .+ ...+.+.++...++
T Consensus 8 i~iQTvlsk~~G~-~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~ 86 (423)
T PF14701_consen 8 ISIQTVLSKWMGP-FSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAE 86 (423)
T ss_pred eEEEEEhhhhcCC-HhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHH
Confidence 6777777654333 34777777888888877 88888776551 1111 11 22356666666666
Q ss_pred hcCCeE----EEeecccccccccccccccccCcCc-ccCCCCC
Q 022752 244 GSYNIR----TTVRKQMGQDISGACGQLVVNLPDK-ISAKSTP 281 (292)
Q Consensus 244 ~~~g~~----v~ir~~~g~~~~~~c~~~~~~~~~~-~~~~~~~ 281 (292)
+++|+- +.+.+. ++-+.-+..||+- .+.+.+|
T Consensus 87 ~~~~ll~~~DvV~NHt------A~nS~Wl~eHPEagYN~~nsP 123 (423)
T PF14701_consen 87 KKYGLLSMTDVVLNHT------ANNSPWLREHPEAGYNLENSP 123 (423)
T ss_pred HHcCceEEEEEeeccC------cCCChHHHhCcccccCCCCCc
Confidence 578763 445554 5556666677765 3333333
No 275
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=24.93 E-value=4.9e+02 Score=23.12 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred CCCcCCCCHHHHHHHHHHhhc-cCCcceEEEecC-Cc-cccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh--HHH
Q 022752 56 MGFKSNLSSGEIVEQLVHASR-LSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA--INK 130 (292)
Q Consensus 56 ~~~~~~~~~eei~~~i~~~~~-~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~--~~~ 130 (292)
+.....++.+.+.+.++.... . ++++|.+.|. || +.|..+.-.++++.+.+.--+--.+...+.++.+... ..+
T Consensus 15 f~~dg~iD~~~~~~li~~l~~~~-Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~ 93 (293)
T PRK04147 15 FDEDGQIDEQGLRRLVRFNIEKQ-GIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAK 93 (293)
T ss_pred CCCCCCcCHHHHHHHHHHHHhcC-CCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHH
Q ss_pred HhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-EEEEEEEeCCCCChHHHHHHHHH
Q 022752 131 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGK 204 (292)
Q Consensus 131 l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v~i~~vl~~g~nd~~~~l~~l~~ 204 (292)
.+++.....+.+.- |.....+-+.+++..+..++..+.+ +..+.....|.+-+.+.+.+|++
T Consensus 94 ~a~~~Gad~v~v~~------------P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 94 YATELGYDAISAVT------------PFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred HHHHcCCCEEEEeC------------CcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
No 276
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=24.79 E-value=85 Score=24.77 Aligned_cols=33 Identities=9% Similarity=0.073 Sum_probs=26.9
Q ss_pred CccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh
Q 022752 89 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA 127 (292)
Q Consensus 89 GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~ 127 (292)
-||.+ |+.+..++..++++| +...+.+++..+.
T Consensus 41 ~e~~f-Y~Di~rIL~dLk~~G-----Vtl~~ASRt~ap~ 73 (144)
T KOG4549|consen 41 EEMIF-YDDIRRILVDLKKLG-----VTLIHASRTMAPQ 73 (144)
T ss_pred ceeee-ccchhHHHHHHHhcC-----cEEEEecCCCCHH
Confidence 46666 577999999999998 7888888887665
No 277
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=24.65 E-value=1.3e+02 Score=24.94 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=31.1
Q ss_pred HHHHHHHH--HHhhccCCcceEEEecCCccccCHHHHHHHHHHHhC--CCCCCCCCeEEEEcC
Q 022752 64 SGEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG--LPFQVSPKRITVSTV 122 (292)
Q Consensus 64 ~eei~~~i--~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~--~g~~~~~~~i~l~TN 122 (292)
.+++.+.+ .+... .+-+.+.++. |+|++. .....+++.+++ .| ..+.+...
T Consensus 60 ~~~~~~~i~~~~~~~-~g~~V~~l~~-GDP~~~-~~~~~l~~~l~~~~~g-----i~v~iiPG 114 (210)
T PF00590_consen 60 YDEIAEIIEAIEAAK-EGKDVVVLVS-GDPLFF-STGSYLVRALRAEERG-----IEVEIIPG 114 (210)
T ss_dssp HHHHHHHHHHHHHHH-TTSEEEEEES-BSTTSS-SSHHHHHHHHHHHHTT-----CEEEEE--
T ss_pred hhHHHHHHHHHHHHh-ccCCEEEeCC-CCCCcc-cHHHHHHHHHHhhcCC-----CceEEEec
Confidence 34555555 33222 2344666777 999996 666778888877 66 56776654
No 278
>KOG2965 consensus Arginase [Amino acid transport and metabolism]
Probab=24.47 E-value=3.8e+02 Score=24.08 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=45.2
Q ss_pred ceEEEEecCCChHHHhh-hcCcccCccHHHHHHHHHHHHHhhCCeEEEEEE-EeCCCCChHHHHHHHHHHHhh
Q 022752 138 LNLAVSLHAPVQDVRCQ-IMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI-MLDGVNDEEQHAHQLGKLLET 208 (292)
Q Consensus 138 ~~l~iSld~~~~~~~~~-i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~v-l~~g~nd~~~~l~~l~~~l~~ 208 (292)
+.+.+++|+.++...-. .+|+..+.++.+-+..++. ..+.|.-+.+.++ +.|.+.+++++.+..++.+.+
T Consensus 235 ihlSfDvDg~Dp~~aPAtGTpv~gGLt~rE~myi~e~-i~~Tg~LiAldvvEvnP~l~~t~eea~~tv~~av~ 306 (318)
T KOG2965|consen 235 IHLSFDVDGFDPSYAPATGTPVVGGLTYREGMYICEE-IAETGLLIALDVVEVNPLLGNTEEEAKTTVSLAVA 306 (318)
T ss_pred eeEEEecCCcCccccCCCCCcCCCcccHHHHHHHHHH-HHhcCCeeEEEEEEeccccCCcHHHHHHHHHHHHH
Confidence 56778889998876533 3555666777777777644 3445555555544 346666667788877776654
No 279
>PRK15452 putative protease; Provisional
Probab=24.42 E-value=5.9e+02 Score=24.48 Aligned_cols=82 Identities=10% Similarity=0.004 Sum_probs=43.6
Q ss_pred cCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHH
Q 022752 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAH 200 (292)
Q Consensus 121 TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~ 200 (292)
.-|.+..++...+.+ ...|.+..+..+...+. ...+.+++.+++ +++++.|.++.+.+..++. ++..+.+.
T Consensus 9 pag~~e~l~aAi~~G-ADaVY~G~~~~~~R~~~------~~f~~edl~eav-~~ah~~g~kvyvt~n~i~~-e~el~~~~ 79 (443)
T PRK15452 9 PAGTLKNMRYAFAYG-ADAVYAGQPRYSLRVRN------NEFNHENLALGI-NEAHALGKKFYVVVNIAPH-NAKLKTFI 79 (443)
T ss_pred ECCCHHHHHHHHHCC-CCEEEECCCccchhhhc------cCCCHHHHHHHH-HHHHHcCCEEEEEecCcCC-HHHHHHHH
Confidence 344444444444443 24466666554433221 234667777877 6788888888777665553 22233344
Q ss_pred HHHHHHhhCCc
Q 022752 201 QLGKLLETFQV 211 (292)
Q Consensus 201 ~l~~~l~~~~~ 211 (292)
+..+.+.+.++
T Consensus 80 ~~l~~l~~~gv 90 (443)
T PRK15452 80 RDLEPVIAMKP 90 (443)
T ss_pred HHHHHHHhCCC
Confidence 44444444443
No 280
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=24.40 E-value=3e+02 Score=21.97 Aligned_cols=30 Identities=10% Similarity=0.241 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHHHhcCCeEEEeeccccccc
Q 022752 231 SDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260 (292)
Q Consensus 231 ~~e~l~~~~~~l~~~~g~~v~ir~~~g~~~ 260 (292)
..+...+|.+.|++.+++++.+-..+-+++
T Consensus 72 ~~~~~~~f~~~L~~r~~lpv~l~DERltTv 101 (141)
T COG0816 72 RAELARKFAERLKKRFNLPVVLWDERLSTV 101 (141)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEcCccCHH
Confidence 555566666666655666665555444443
No 281
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=24.25 E-value=4.8e+02 Score=24.32 Aligned_cols=61 Identities=8% Similarity=0.060 Sum_probs=44.4
Q ss_pred CCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEE
Q 022752 190 DGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251 (292)
Q Consensus 190 ~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ 251 (292)
|..-++.+.+.++++.++..+.. +.--.|.|...-..|+.+..+.+..+++..+ ++|+.+.
T Consensus 108 PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~-e~Gl~~~ 169 (352)
T PRK13396 108 PCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAARE-ATGLGII 169 (352)
T ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHH-HcCCcEE
Confidence 55667888999999999998876 3334465643345677778777888888777 7888753
No 282
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=24.13 E-value=2.9e+02 Score=21.61 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhccCCcceEEEecCC---------------ccccCHHHHHHHHHHHhCCC
Q 022752 64 SGEIVEQLVHASRLSNIRNVVFMGMG---------------EPLNNYAALVEAVRIMTGLP 109 (292)
Q Consensus 64 ~eei~~~i~~~~~~~~~~~I~fsG~G---------------EPll~~~~i~ell~~~~~~g 109 (292)
+++.++.+.+. +++.|++.. | =|-|..+.+.|+++.+++.|
T Consensus 2 ~~~~~~~lk~~----~v~si~i~a-~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~G 57 (132)
T PF14871_consen 2 PEQFVDTLKEA----HVNSITIFA-KCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERG 57 (132)
T ss_pred HHHHHHHHHHh----CCCEEEEEc-ccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCC
Confidence 45555555543 466777644 2 35555677899999999998
No 283
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=23.82 E-value=1.9e+02 Score=24.72 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=30.3
Q ss_pred HHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 66 EIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 66 ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
++.+.+.+... .+-+.+.++. |+|+++ .....+++.+.+.+ ..+.+...
T Consensus 78 ~~~~~i~~~~~-~g~~Vv~l~~-GDP~~y-~~~~~l~~~~~~~~-----~~veviPG 126 (230)
T TIGR01467 78 EAAEAVAAELE-EGRDVAFLTL-GDPSLY-STFSYLLQRLQGMG-----IEVEVVPG 126 (230)
T ss_pred HHHHHHHHHHH-CCCcEEEEeC-CCCCcc-cCHHHHHHHHHHCC-----CcEEEeCC
Confidence 44444444332 2445777888 999995 65667778777655 45666543
No 284
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=23.28 E-value=2.4e+02 Score=24.72 Aligned_cols=52 Identities=23% Similarity=0.176 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 63 SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 63 ~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
..+++.+.+.+.... +-+.+.++. |+|+++ .....+++.+++.+ ..+.+...
T Consensus 77 ~~~~~~~~i~~~~~~-g~~Vvvl~~-GDP~~y-s~~~~l~~~l~~~~-----~~veiiPG 128 (263)
T PLN02625 77 TQEEIHELLLSFAEA-GKTVVRLKG-GDPLVF-GRGGEEMDALRKNG-----IPVTVVPG 128 (263)
T ss_pred CHHHHHHHHHHHHHC-CCeEEEEcC-CCchhh-hhHHHHHHHHHHCC-----CCEEEECC
Confidence 455666666554322 334555777 999995 66677888887766 45666644
No 285
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=23.04 E-value=5e+02 Score=22.52 Aligned_cols=70 Identities=7% Similarity=0.141 Sum_probs=43.9
Q ss_pred HHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEE
Q 022752 174 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 250 (292)
Q Consensus 174 ~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v 250 (292)
..++.|..+..-..+-|+ ...+.++.+++.+. .+-++..+|-..++.|.+...+++.++++.+. +.|+..
T Consensus 111 ~Ik~~g~~~kaGlalnP~--Tp~~~i~~~l~~vD----~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~-~~~~~~ 180 (228)
T PRK08091 111 WLAKQKTTVLIGLCLCPE--TPISLLEPYLDQID----LIQILTLDPRTGTKAPSDLILDRVIQVENRLG-NRRVEK 180 (228)
T ss_pred HHHHCCCCceEEEEECCC--CCHHHHHHHHhhcC----EEEEEEECCCCCCccccHHHHHHHHHHHHHHH-hcCCCc
Confidence 344556644555566665 24445555544332 25566678865667787778888999998888 566553
No 286
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=22.92 E-value=91 Score=21.01 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=11.5
Q ss_pred EEecCCccccCHHHHHHHH
Q 022752 84 VFMGMGEPLNNYAALVEAV 102 (292)
Q Consensus 84 ~fsG~GEPll~~~~i~ell 102 (292)
.|.| |+.+--.+.|.+++
T Consensus 54 ifi~-g~~igg~~~l~~~l 71 (72)
T cd03029 54 VFID-GELIGGSDDLEKYF 71 (72)
T ss_pred EEEC-CEEEeCHHHHHHHh
Confidence 4777 77776666565543
No 287
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=22.79 E-value=95 Score=24.43 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHhhCCcE--EEEEecCCCCCCCCcCCCcHHHHHHHH----HHHHhcCCeEE
Q 022752 195 EEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQ----KILRGSYNIRT 250 (292)
Q Consensus 195 ~~~~l~~l~~~l~~~~~~--v~l~p~~p~~~~~~~~~~~~e~l~~~~----~~l~~~~g~~v 250 (292)
.-++++-+.+.+++.|+. +-++|.++. ..++...+.+..+.+. ..++ .+|..+
T Consensus 34 Ey~Dl~l~L~~~k~~g~~~lfVi~PvNg~--wydytG~~~~~r~~~y~kI~~~~~-~~gf~v 92 (130)
T PF04914_consen 34 EYDDLQLLLDVCKELGIDVLFVIQPVNGK--WYDYTGLSKEMRQEYYKKIKYQLK-SQGFNV 92 (130)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEE----HH--HHHHTT--HHHHHHHHHHHHHHHH-TTT--E
T ss_pred cHHHHHHHHHHHHHcCCceEEEecCCcHH--HHHHhCCCHHHHHHHHHHHHHHHH-HCCCEE
Confidence 456788888888888876 444566543 2344555666655544 4445 678764
No 288
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=22.32 E-value=2.7e+02 Score=23.15 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=33.5
Q ss_pred hhccCCcceEEEecCCccccC-HHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 022752 74 ASRLSNIRNVVFMGMGEPLNN-YAALVEAVRIMTGLPFQVSPKRITVSTVGIV 125 (292)
Q Consensus 74 ~~~~~~~~~I~fsG~GEPll~-~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~ 125 (292)
+.+..+.+.|..|. |.|+-. -+.|+++++.+..-. .-+.+.-+|..
T Consensus 19 aa~~iGgRCIS~S~-GNPT~lsG~elV~lIk~a~~DP-----V~VMfDD~G~~ 65 (180)
T PF14097_consen 19 AAKNIGGRCISQSA-GNPTPLSGEELVELIKQAPHDP-----VLVMFDDKGFI 65 (180)
T ss_pred HHHHhCcEEEeccC-CCCCcCCHHHHHHHHHhCCCCC-----EEEEEeCCCCC
Confidence 34445778999999 999975 455666666665543 78999999964
No 289
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=22.29 E-value=1.1e+02 Score=26.63 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=32.2
Q ss_pred HHHHHHHHhhCCcE-EEEEecCCCC-CCCCcCC----------CcHHHHHHHHHHHHhcCCeEEEee
Q 022752 199 AHQLGKLLETFQVV-VNLIPFNPIG-SVSQFRT----------SSDDKVSSFQKILRGSYNIRTTVR 253 (292)
Q Consensus 199 l~~l~~~l~~~~~~-v~l~p~~p~~-~~~~~~~----------~~~e~l~~~~~~l~~~~g~~v~ir 253 (292)
+.+-+++|+++|+. |.+.|..+.+ ....|.+ =+.+++.++.+.+. +.|+.|.+-
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h-~~gi~VilD 71 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAH-KRGIKVILD 71 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHH-HTTCEEEEE
T ss_pred HHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccc-cccceEEEe
Confidence 33444677777876 7776655432 1111211 14778888888888 789987543
No 290
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=21.95 E-value=5.5e+02 Score=22.62 Aligned_cols=182 Identities=10% Similarity=0.023 Sum_probs=89.3
Q ss_pred cCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEc----CCchh----hHHH
Q 022752 59 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVST----VGIVH----AINK 130 (292)
Q Consensus 59 ~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~T----NG~~~----~~~~ 130 (292)
...++.++.++.+....+ .+++.|-+. =|..+++ -.+.++.+.+.++ +...+.... .+... .+..
T Consensus 14 ~~~~s~e~k~~i~~~L~~-~Gv~~IE~G---~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (273)
T cd07941 14 GISFSVEDKLRIARKLDE-LGVDYIEGG---WPGSNPK-DTEFFARAKKLKL--KHAKLAAFGSTRRAGVKAEEDPNLQA 86 (273)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEec---CCcCCHH-HHHHHHHHHHcCC--CCcEEEEEecccccCCCccchHHHHH
Confidence 456777777666665544 478888772 2455544 3566666655431 012222211 12111 1222
Q ss_pred HhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEe-CCCCChHHHHHHHHHHHhhC
Q 022752 131 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIML-DGVNDEEQHAHQLGKLLETF 209 (292)
Q Consensus 131 l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~-~g~nd~~~~l~~l~~~l~~~ 209 (292)
..+.+ ...+.+.+-+.+......+ +......++.+.+.+ +++++.|..+.+...-+ .+.-.+.+.+.++++.+.+.
T Consensus 87 a~~~g-~~~i~i~~~~sd~~~~~~~-~~~~~~~~~~~~~~i-~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 163 (273)
T cd07941 87 LLEAG-TPVVTIFGKSWDLHVTEAL-GTTLEENLAMIRDSV-AYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEA 163 (273)
T ss_pred HHhCC-CCEEEEEEcCCHHHHHHHc-CCCHHHHHHHHHHHH-HHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhC
Confidence 33332 2234454433322333332 122234455666666 56677787776653322 22223456677888887777
Q ss_pred CcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCC-e--EEEeeccccc
Q 022752 210 QVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN-I--RTTVRKQMGQ 258 (292)
Q Consensus 210 ~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g-~--~v~ir~~~g~ 258 (292)
|+. +.+-.- . -...++++..+.+.+++..+ + .+...+..|.
T Consensus 164 g~~~i~l~DT--~------G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gl 208 (273)
T cd07941 164 GADWLVLCDT--N------GGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGL 208 (273)
T ss_pred CCCEEEEecC--C------CCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCc
Confidence 776 444211 1 12355666666666654444 3 3344455453
No 291
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=21.93 E-value=8.1e+02 Score=24.52 Aligned_cols=167 Identities=10% Similarity=0.075 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCCc------cccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC-----ch--h
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGE------PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG-----IV--H 126 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE------Pll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG-----~~--~ 126 (292)
..++.++.+..+....+ .++..|-+.| |- ++++.+ =.+.++.+++.. +...+.....| +. +
T Consensus 16 ~~~~t~dkl~ia~~L~~-~Gv~~IE~~G-Gatfd~~~~f~~e~-~~e~l~~l~~~~---~~~~l~~L~Rg~N~~G~~~yp 89 (582)
T TIGR01108 16 TRMRTEDMLPIAEKLDD-VGYWSLEVWG-GATFDACIRFLNED-PWERLRELKKAL---PNTPLQMLLRGQNLLGYRHYA 89 (582)
T ss_pred ccCCHHHHHHHHHHHHH-cCCCEEEecC-CcccccccccCCCC-HHHHHHHHHHhC---CCCEEEEEEccccccccccCc
Confidence 46778887777666544 3788888887 73 556533 345666666531 11344444333 21 1
Q ss_pred h------HHHHhhhCCCceE-EEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHH
Q 022752 127 A------INKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHA 199 (292)
Q Consensus 127 ~------~~~l~~~~~~~~l-~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l 199 (292)
+ ++...+.+ +++ .+. ++.++. +++..++ +++++.|..+.+.+...-.-..+.+.+
T Consensus 90 ddvv~~~v~~a~~~G--vd~irif-~~lnd~--------------~n~~~~i-~~ak~~G~~v~~~i~~t~~p~~~~~~~ 151 (582)
T TIGR01108 90 DDVVERFVKKAVENG--MDVFRIF-DALNDP--------------RNLQAAI-QAAKKHGAHAQGTISYTTSPVHTLETY 151 (582)
T ss_pred hhhHHHHHHHHHHCC--CCEEEEE-EecCcH--------------HHHHHHH-HHHHHcCCEEEEEEEeccCCCCCHHHH
Confidence 1 12222322 333 222 222221 2445556 566777776665432221111356778
Q ss_pred HHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEE--Eeeccccc
Q 022752 200 HQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT--TVRKQMGQ 258 (292)
Q Consensus 200 ~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v--~ir~~~g~ 258 (292)
.++++.+.+.|+. +.+-.- ... ..+.++.++.+.+++..++++ ......|.
T Consensus 152 ~~~~~~~~~~Gad~I~i~Dt------~G~--~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 152 LDLAEELLEMGVDSICIKDM------AGI--LTPKAAYELVSALKKRFGLPVHLHSHATTGM 205 (582)
T ss_pred HHHHHHHHHcCCCEEEECCC------CCC--cCHHHHHHHHHHHHHhCCCceEEEecCCCCc
Confidence 8888888888876 544211 122 345566666666654445443 33344443
No 292
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=21.85 E-value=1.1e+02 Score=23.23 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=22.9
Q ss_pred ccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 022752 90 EPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 124 (292)
Q Consensus 90 EPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~ 124 (292)
+-.++ +.+.++++.+++.| ..+.+.||+.
T Consensus 23 ~~~~~-~~v~~~l~~L~~~g-----~~l~i~Sn~~ 51 (132)
T TIGR01662 23 ERILY-PEVPDALAELKEAG-----YKVVIVTNQS 51 (132)
T ss_pred HheeC-CCHHHHHHHHHHCC-----CEEEEEECCc
Confidence 44443 55789999999888 7899999986
No 293
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=21.60 E-value=2.4e+02 Score=24.01 Aligned_cols=52 Identities=21% Similarity=0.173 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 63 SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 63 ~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
..+++.+.+.+.... +-..+.++. |+|+++ .....+++.+++.+ ..+.+...
T Consensus 62 ~~~~~~~~i~~~~~~-g~~V~~l~~-GDP~~~-~~~~~l~~~~~~~~-----~~v~viPG 113 (236)
T TIGR01469 62 KQEEINRLLVELARE-GKKVVRLKG-GDPFVF-GRGGEEAEALAEAG-----IPFEVVPG 113 (236)
T ss_pred CHHHHHHHHHHHHHC-CCeEEEEeC-cCcccc-cCHHHHHHHHHHCC-----CCEEEECC
Confidence 345666655443221 334455677 999996 55667888887765 45666533
No 294
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=21.13 E-value=7.4e+02 Score=23.78 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=21.0
Q ss_pred EeCCCCChHHHHHHHHHHHhhCCcEEEEEe
Q 022752 188 MLDGVNDEEQHAHQLGKLLETFQVVVNLIP 217 (292)
Q Consensus 188 l~~g~nd~~~~l~~l~~~l~~~~~~v~l~p 217 (292)
++.+.+-+..++.++.++|+.+|+.+.++|
T Consensus 173 iIgg~~~~~~D~~elk~lL~~~Gl~v~~lp 202 (455)
T PRK14476 173 VLPGSHLTPGDIEELREIIEAFGLEPIILP 202 (455)
T ss_pred EECCCCCCcccHHHHHHHHHHcCCceEEec
Confidence 445544345678899999999998876553
No 295
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.96 E-value=2.5e+02 Score=18.45 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=22.4
Q ss_pred eEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 022752 82 NVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123 (292)
Q Consensus 82 ~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG 123 (292)
.+.|+| +.-+.+..+++.+++.|+..+-.-+...||-
T Consensus 3 ~ll~~g-----~~~~el~~~l~~~r~~~~~~~~kAvlT~tN~ 39 (58)
T PF12646_consen 3 FLLFSG-----FSGEELDKFLDALRKAGIPIPLKAVLTPTNI 39 (58)
T ss_pred EEEECC-----CCHHHHHHHHHHHHHcCCCcceEEEECCCcc
Confidence 456666 3346788888899888754443333344443
No 296
>PRK10444 UMP phosphatase; Provisional
Probab=20.91 E-value=1.1e+02 Score=26.84 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=27.2
Q ss_pred CcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 022752 79 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 125 (292)
Q Consensus 79 ~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~ 125 (292)
.++++.+.| ++|. +...+.++.+++.| ..+.+.||...
T Consensus 7 DlDGtL~~~-~~~~---p~a~~~l~~L~~~g-----~~~~~~Tn~~~ 44 (248)
T PRK10444 7 DIDGVLMHD-NVAV---PGAAEFLHRILDKG-----LPLVLLTNYPS 44 (248)
T ss_pred eCCCceEeC-CeeC---ccHHHHHHHHHHCC-----CeEEEEeCCCC
Confidence 356777777 6653 34568888888887 67888888754
No 297
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=20.86 E-value=5.7e+02 Score=22.35 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHH-HHHHHHhcCCeEEEeeccc---ccccccccccccc
Q 022752 195 EEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSS-FQKILRGSYNIRTTVRKQM---GQDISGACGQLVV 269 (292)
Q Consensus 195 ~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~-~~~~l~~~~g~~v~ir~~~---g~~~~~~c~~~~~ 269 (292)
+.++..++++.+.+.|+. +-++ .|.. +. ++.+.+.. +.++++ ..++++.+-+.+ |.++.+.--.-+.
T Consensus 77 ~~~~~i~~a~~a~~~Gad~v~v~--pP~y----~~-~~~~~~~~~~~~ia~-~~~~pi~iYn~P~~tg~~l~~~~~~~L~ 148 (281)
T cd00408 77 STREAIELARHAEEAGADGVLVV--PPYY----NK-PSQEGIVAHFKAVAD-ASDLPVILYNIPGRTGVDLSPETIARLA 148 (281)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEC--CCcC----CC-CCHHHHHHHHHHHHh-cCCCCEEEEECccccCCCCCHHHHHHHh
Confidence 445677777777777776 4332 2321 11 34444444 444445 456666544332 4454433333333
Q ss_pred cCcCcccCCC
Q 022752 270 NLPDKISAKS 279 (292)
Q Consensus 270 ~~~~~~~~~~ 279 (292)
++|.-+-.|-
T Consensus 149 ~~~~v~giK~ 158 (281)
T cd00408 149 EHPNIVGIKD 158 (281)
T ss_pred cCCCEEEEEe
Confidence 4554444443
No 298
>PRK10785 maltodextrin glucosidase; Provisional
Probab=20.73 E-value=2.7e+02 Score=27.83 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhhCCcE-EEEEecCCCCCCC-----CcCCC-----cHHHHHHHHHHHHhcCCeEEEee
Q 022752 195 EEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS-----QFRTS-----SDDKVSSFQKILRGSYNIRTTVR 253 (292)
Q Consensus 195 ~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~-----~~~~~-----~~e~l~~~~~~l~~~~g~~v~ir 253 (292)
+..-|.+-.++|+++|+. |.+.|+.+..... +|... +.+++.++.+.+. +.|+.|.+-
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH-~rGikVilD 245 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQ-QRGMRLVLD 245 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHH-HCCCEEEEE
Confidence 344555556888889987 8888866543222 22221 4577888888888 789987544
No 299
>PF09153 DUF1938: Domain of unknown function (DUF1938); InterPro: IPR015236 This domain, which is predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopts a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. The exact function has not, as yet, been defined, though it has been postulated that this domain may confer thermostability to the protein []. ; GO: 0005737 cytoplasm; PDB: 1MGT_A.
Probab=20.61 E-value=42 Score=24.23 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=24.5
Q ss_pred CcceEEEecCCccccCHHHHHHHHHHHhCCC
Q 022752 79 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 109 (292)
Q Consensus 79 ~~~~I~fsG~GEPll~~~~i~ell~~~~~~g 109 (292)
++++|+|+=.|+-++. ++|-.++..+++.|
T Consensus 23 kIqGItfslDg~efl~-eri~~L~~~L~kRg 52 (86)
T PF09153_consen 23 KIQGITFSLDGEEFLR-ERISRLIEFLKKRG 52 (86)
T ss_dssp SEEEEEEESSHHHHHH--HHHHHHHHHHHTT
T ss_pred ceeeEEEEeccHHHHH-HHHHHHHHHHHhcC
Confidence 5789999987888884 78999999999887
No 300
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=20.60 E-value=2.6e+02 Score=23.90 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=30.5
Q ss_pred HHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 66 EIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 66 ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
++.+.+.+... .+-+.+.++. |+|+++ .....+++.+++.+ ..+.+...
T Consensus 78 ~~~~~i~~~~~-~g~~V~~l~~-GDP~~y-~~~~~l~~~~~~~~-----~~v~viPG 126 (229)
T PRK05576 78 ENAEEIAAEAE-EGKNVAFITL-GDPNLY-STFSHLLEYLKCHD-----IEVETVPG 126 (229)
T ss_pred HHHHHHHHHHH-cCCcEEEEeC-cCcccc-ccHHHHHHHHHhCC-----CCEEEeCC
Confidence 45555554332 2345666777 999995 66677888887655 45666543
No 301
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=20.44 E-value=3.3e+02 Score=19.40 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhCCcE-EEEEecCCC
Q 022752 197 QHAHQLGKLLETFQVV-VNLIPFNPI 221 (292)
Q Consensus 197 ~~l~~l~~~l~~~~~~-v~l~p~~p~ 221 (292)
..+.+.++.+...|+. +.++|+.+.
T Consensus 45 P~i~~~l~~l~~~g~~~vvvvPl~~~ 70 (101)
T cd03409 45 PDTEEAIRELAEEGYQRVVIVPLAPV 70 (101)
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCccc
Confidence 3566777777777765 888998887
No 302
>COG1647 Esterase/lipase [General function prediction only]
Probab=20.06 E-value=2.7e+02 Score=24.37 Aligned_cols=93 Identities=18% Similarity=0.230 Sum_probs=55.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCC-CCCcCCCcH----HHHHHHHHHHHhcCCeE-EE-eeccccc
Q 022752 186 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS-VSQFRTSSD----DKVSSFQKILRGSYNIR-TT-VRKQMGQ 258 (292)
Q Consensus 186 ~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~-~~~~~~~~~----e~l~~~~~~l~~~~g~~-v~-ir~~~g~ 258 (292)
+.++-|+..+..+++.|+++|.+.|..+..=.|+.++. ...+..... +++....+.|. +.|++ +. +.-.+|.
T Consensus 18 VLllHGFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~-~~gy~eI~v~GlSmGG 96 (243)
T COG1647 18 VLLLHGFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLK-EAGYDEIAVVGLSMGG 96 (243)
T ss_pred EEEEeccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHH-HcCCCeEEEEeecchh
Confidence 45678888899999999999999887765533444431 112222232 33444555666 45664 43 4446677
Q ss_pred ccccccccccccCcCcccCCCCC
Q 022752 259 DISGACGQLVVNLPDKISAKSTP 281 (292)
Q Consensus 259 ~~~~~c~~~~~~~~~~~~~~~~~ 281 (292)
.....-+.. .+|.||-.-++|
T Consensus 97 v~alkla~~--~p~K~iv~m~a~ 117 (243)
T COG1647 97 VFALKLAYH--YPPKKIVPMCAP 117 (243)
T ss_pred HHHHHHHhh--CCccceeeecCC
Confidence 766555544 336666665554
No 303
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=20.03 E-value=4.3e+02 Score=21.49 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=39.4
Q ss_pred HHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCe
Q 022752 169 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNI 248 (292)
Q Consensus 169 ~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~ 248 (292)
.++ .+++..+.+..++.. +...+ .+...++++.++.+.-++.... .......+.+.+.++.+.+.+....
T Consensus 23 ~n~-~fL~~L~LKTII~L~---~e~~~----~~~~~f~~~~~I~l~~~~~~~~--~~~~~~~~~~~v~~aL~~ild~~n~ 92 (164)
T PF03162_consen 23 ANF-PFLERLGLKTIINLR---PEPPS----QDFLEFAEENGIKLIHIPMSSS--KDPWVPISEEQVAEALEIILDPRNY 92 (164)
T ss_dssp HHH-HHHHHHT-SEEEE-----SS-------HHHHHHHHHTT-EEEE---------GGG----HHHHHHHHHHHH-GGG-
T ss_pred hhH-HHHHHCCCceEEEec---CCCCC----HHHHHHHhhcCceEEEeccccc--cCccccCCHHHHHHHHHHHhCCCCC
Confidence 345 456666777666533 21112 3344477888776444444332 1124456777887777765434557
Q ss_pred EEEeeccccccccc
Q 022752 249 RTTVRKQMGQDISG 262 (292)
Q Consensus 249 ~v~ir~~~g~~~~~ 262 (292)
++.+....|.+..+
T Consensus 93 PvLiHC~~G~~rTG 106 (164)
T PF03162_consen 93 PVLIHCNHGKDRTG 106 (164)
T ss_dssp SEEEE-SSSSSHHH
T ss_pred CEEEEeCCCCcchh
Confidence 88888888888653
Done!