Query 022752
Match_columns 292
No_of_seqs 158 out of 1836
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 10:32:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfa_A Ribosomal RNA large sub 100.0 1.2E-44 4.3E-49 335.6 27.2 253 5-274 100-365 (404)
2 3c8f_A Pyruvate formate-lyase 100.0 3.6E-27 1.2E-31 204.6 20.6 211 19-250 11-243 (245)
3 2yx0_A Radical SAM enzyme; pre 99.9 2E-24 6.7E-29 197.7 23.9 209 32-250 68-311 (342)
4 1tv8_A MOAA, molybdenum cofact 99.9 1.2E-23 4.1E-28 192.2 25.8 177 34-222 14-200 (340)
5 2z2u_A UPF0026 protein MJ0257; 99.9 1.3E-24 4.6E-29 196.1 18.0 204 32-251 49-289 (311)
6 3can_A Pyruvate-formate lyase- 99.9 2.9E-21 1E-25 160.9 16.5 158 81-252 5-180 (182)
7 2a5h_A L-lysine 2,3-aminomutas 99.8 1.5E-19 5.2E-24 169.2 23.4 191 35-243 116-316 (416)
8 3iix_A Biotin synthetase, puta 99.8 6.9E-19 2.4E-23 160.9 22.4 191 38-243 57-257 (348)
9 1r30_A Biotin synthase; SAM ra 99.7 4.3E-16 1.5E-20 143.7 23.2 192 37-243 68-274 (369)
10 3t7v_A Methylornithine synthas 99.7 2.5E-16 8.5E-21 144.2 18.6 193 34-241 61-264 (350)
11 2qgq_A Protein TM_1862; alpha- 99.6 2.2E-14 7.5E-19 128.9 19.9 178 34-222 4-197 (304)
12 1olt_A Oxygen-independent copr 99.5 5.5E-12 1.9E-16 119.4 21.6 209 31-250 50-284 (457)
13 4fhd_A Spore photoproduct lyas 98.5 8.5E-07 2.9E-11 80.8 11.8 159 37-208 110-282 (368)
14 2cw6_A Hydroxymethylglutaryl-C 94.7 2 6.7E-05 37.5 18.1 179 60-259 22-214 (298)
15 1ydn_A Hydroxymethylglutaryl-C 87.2 14 0.00047 31.9 18.4 168 60-247 21-198 (295)
16 3noy_A 4-hydroxy-3-methylbut-2 85.8 6.5 0.00022 35.2 10.5 139 96-271 120-284 (366)
17 3p14_A L-rhamnose isomerase; T 80.5 9.1 0.00031 35.0 9.4 127 58-208 70-215 (424)
18 2l69_A Rossmann 2X3 fold prote 74.6 20 0.00069 25.4 9.7 75 162-253 33-107 (134)
19 3chv_A Prokaryotic domain of u 71.2 21 0.00072 30.9 9.0 159 61-243 30-198 (284)
20 2y7e_A 3-keto-5-aminohexanoate 70.8 51 0.0017 28.4 12.4 159 61-243 30-200 (282)
21 3no5_A Uncharacterized protein 68.5 30 0.001 29.7 9.3 159 60-242 25-193 (275)
22 3lot_A Uncharacterized protein 66.5 67 0.0023 28.1 12.6 61 60-124 27-90 (314)
23 2ztj_A Homocitrate synthase; ( 62.7 86 0.0029 28.1 19.6 177 60-259 20-203 (382)
24 4g9p_A 4-hydroxy-3-methylbut-2 59.5 1E+02 0.0035 27.9 11.9 33 232-270 272-306 (406)
25 2v9d_A YAGE; dihydrodipicolini 58.1 98 0.0034 27.2 11.2 46 61-107 48-95 (343)
26 3e02_A Uncharacterized protein 57.9 65 0.0022 28.1 9.6 61 60-124 27-90 (311)
27 3c6c_A 3-keto-5-aminohexanoate 55.6 1.1E+02 0.0036 26.8 11.6 58 61-122 44-105 (316)
28 2wul_A Glutaredoxin related pr 55.2 16 0.00054 27.2 4.5 21 32-53 20-40 (118)
29 1qwg_A PSL synthase;, (2R)-pho 54.1 57 0.002 27.6 8.2 55 62-126 23-78 (251)
30 1vr6_A Phospho-2-dehydro-3-deo 51.4 48 0.0016 29.5 7.8 68 184-252 107-175 (350)
31 3hh1_A Tetrapyrrole methylase 50.1 25 0.00086 25.6 4.9 42 65-109 66-108 (117)
32 1s4d_A Uroporphyrin-III C-meth 50.0 37 0.0013 28.9 6.7 53 62-122 76-128 (280)
33 3b4u_A Dihydrodipicolinate syn 49.1 1.3E+02 0.0043 25.8 12.6 130 61-203 20-158 (294)
34 3ndc_A Precorrin-4 C(11)-methy 49.1 19 0.00065 30.5 4.7 54 61-122 59-112 (264)
35 1zco_A 2-dehydro-3-deoxyphosph 47.0 55 0.0019 27.7 7.2 62 189-251 29-91 (262)
36 4e16_A Precorrin-4 C(11)-methy 46.1 20 0.00067 30.2 4.2 54 61-122 60-113 (253)
37 2l7x_A Envelope glycoprotein; 44.7 6 0.00021 26.4 0.6 12 43-54 27-39 (77)
38 3ewb_X 2-isopropylmalate synth 44.7 1.5E+02 0.0051 25.4 18.7 180 59-259 21-211 (293)
39 3e49_A Uncharacterized protein 44.3 1.6E+02 0.0054 25.6 12.4 61 60-124 27-90 (311)
40 1vs1_A 3-deoxy-7-phosphoheptul 43.2 46 0.0016 28.5 6.2 64 187-251 42-106 (276)
41 1u83_A Phosphosulfolactate syn 43.1 37 0.0013 29.1 5.4 54 62-126 50-103 (276)
42 1f6k_A N-acetylneuraminate lya 43.1 1.6E+02 0.0053 25.1 11.5 47 61-107 20-68 (293)
43 1cbf_A Cobalt-precorrin-4 tran 42.6 28 0.00097 29.7 4.8 54 62-123 77-130 (285)
44 1d8w_A L-rhamnose isomerase; b 41.2 1.5E+02 0.0053 26.7 9.2 132 58-208 73-217 (426)
45 3e96_A Dihydrodipicolinate syn 41.1 1.7E+02 0.006 25.2 10.8 108 61-185 29-143 (316)
46 2ftp_A Hydroxymethylglutaryl-C 40.9 1.7E+02 0.0058 25.0 18.6 168 60-246 25-201 (302)
47 3v39_A D-alanyl-D-alanine carb 39.9 19 0.00065 33.0 3.3 29 81-109 68-96 (418)
48 3gx8_A Monothiol glutaredoxin- 38.9 38 0.0013 24.8 4.4 21 32-53 16-36 (121)
49 3qze_A DHDPS, dihydrodipicolin 37.9 2E+02 0.0067 24.8 10.8 130 61-204 40-175 (314)
50 3eb2_A Putative dihydrodipicol 37.5 1.9E+02 0.0066 24.7 9.9 130 61-204 21-156 (300)
51 3dz1_A Dihydrodipicolinate syn 37.3 2E+02 0.0068 24.7 9.9 126 61-203 25-159 (313)
52 3lmz_A Putative sugar isomeras 37.3 1.5E+02 0.005 24.1 8.4 19 198-216 114-132 (257)
53 3daq_A DHDPS, dihydrodipicolin 37.2 1.9E+02 0.0066 24.5 10.0 127 65-204 22-154 (292)
54 1ydo_A HMG-COA lyase; TIM-barr 36.9 2E+02 0.0069 24.7 18.5 166 60-246 23-199 (307)
55 1w5d_A Penicillin-binding prot 36.2 31 0.0011 31.9 4.2 42 82-123 90-131 (462)
56 3fkr_A L-2-keto-3-deoxyarabona 36.2 2.1E+02 0.0071 24.6 12.7 128 61-203 25-161 (309)
57 3ipz_A Monothiol glutaredoxin- 36.0 36 0.0012 24.3 3.8 66 32-100 18-92 (109)
58 2e0n_A Precorrin-2 C20-methylt 35.8 36 0.0012 28.5 4.3 50 65-122 83-132 (259)
59 4e84_A D-beta-D-heptose 7-phos 35.7 2.2E+02 0.0074 24.7 10.8 84 79-181 186-269 (352)
60 1o98_A 2,3-bisphosphoglycerate 35.3 1.9E+02 0.0066 27.0 9.5 78 165-247 95-175 (511)
61 3qfe_A Putative dihydrodipicol 35.2 2.2E+02 0.0075 24.6 10.9 46 61-107 28-75 (318)
62 2qbu_A Precorrin-2 methyltrans 35.0 45 0.0015 27.2 4.7 50 65-122 81-130 (232)
63 3na8_A Putative dihydrodipicol 35.0 2.2E+02 0.0075 24.5 11.0 130 61-204 41-177 (315)
64 2p0o_A Hypothetical protein DU 34.9 2.5E+02 0.0085 25.1 11.5 149 63-251 15-175 (372)
65 3m5v_A DHDPS, dihydrodipicolin 34.7 2.2E+02 0.0074 24.3 10.7 128 65-205 27-161 (301)
66 2wem_A Glutaredoxin-related pr 34.1 49 0.0017 24.2 4.3 65 32-99 20-94 (118)
67 3nvt_A 3-deoxy-D-arabino-heptu 33.4 1.1E+02 0.0037 27.6 7.2 59 192-252 152-211 (385)
68 1w79_A D-alanyl-D-alanine carb 32.9 38 0.0013 31.6 4.3 41 82-122 87-127 (489)
69 2ybo_A Methyltransferase; SUMT 32.1 52 0.0018 28.3 4.8 53 62-122 86-138 (294)
70 1ve2_A Uroporphyrin-III C-meth 32.0 53 0.0018 26.9 4.7 53 62-122 62-114 (235)
71 3e96_A Dihydrodipicolinate syn 30.6 55 0.0019 28.4 4.7 76 195-280 91-169 (316)
72 1wyz_A Putative S-adenosylmeth 30.4 58 0.002 27.0 4.7 49 65-121 70-119 (242)
73 1va0_A Uroporphyrin-III C-meth 29.9 70 0.0024 26.2 5.1 53 62-122 59-111 (239)
74 3eeg_A 2-isopropylmalate synth 29.8 2.8E+02 0.0094 24.1 16.5 168 60-247 23-194 (325)
75 3ble_A Citramalate synthase fr 29.6 2.8E+02 0.0096 24.1 19.1 182 60-259 36-227 (337)
76 2q02_A Putative cytoplasmic pr 29.1 1.9E+02 0.0066 23.4 7.8 101 128-242 53-161 (272)
77 2jvf_A De novo protein M7; tet 28.7 87 0.003 20.9 4.2 49 161-211 28-78 (96)
78 3tak_A DHDPS, dihydrodipicolin 28.5 2.7E+02 0.0092 23.5 10.3 130 61-204 18-153 (291)
79 1lwj_A 4-alpha-glucanotransfer 27.5 83 0.0028 28.4 5.6 55 198-253 24-89 (441)
80 3ivs_A Homocitrate synthase, m 27.4 3.5E+02 0.012 24.5 19.5 179 60-259 56-237 (423)
81 1ea9_C Cyclomaltodextrinase; h 27.1 90 0.0031 29.5 5.9 57 196-253 171-238 (583)
82 2z1k_A (NEO)pullulanase; hydro 26.5 45 0.0015 30.5 3.5 22 231-253 95-116 (475)
83 3kwp_A Predicted methyltransfe 26.3 1.2E+02 0.0042 26.0 6.1 52 63-122 73-125 (296)
84 3s5o_A 4-hydroxy-2-oxoglutarat 25.5 3.2E+02 0.011 23.4 12.0 47 61-108 31-79 (307)
85 3kws_A Putative sugar isomeras 25.5 2.8E+02 0.0096 22.7 15.6 40 62-109 38-77 (287)
86 2pr7_A Haloacid dehalogenase/e 25.2 64 0.0022 22.9 3.7 26 96-126 21-46 (137)
87 1j0h_A Neopullulanase; beta-al 25.1 76 0.0026 30.0 5.0 57 196-253 175-242 (588)
88 2kl5_A Uncharacterized protein 25.1 19 0.00065 26.3 0.5 12 42-53 86-97 (110)
89 3obe_A Sugar phosphate isomera 24.7 1E+02 0.0036 26.1 5.4 78 169-255 79-171 (305)
90 2z6r_A Diphthine synthase; met 24.6 58 0.002 27.3 3.6 51 65-124 64-115 (265)
91 2f06_A Conserved hypothetical 24.5 51 0.0018 24.6 3.0 72 177-251 64-136 (144)
92 1wzl_A Alpha-amylase II; pullu 24.2 87 0.003 29.6 5.2 56 197-253 173-239 (585)
93 2wci_A Glutaredoxin-4; redox-a 23.7 74 0.0025 23.9 3.7 65 32-99 35-108 (135)
94 3p6l_A Sugar phosphate isomera 23.2 2.9E+02 0.01 22.2 8.3 71 168-255 65-136 (262)
95 1g94_A Alpha-amylase; beta-alp 23.1 1E+02 0.0036 27.8 5.3 58 195-253 12-84 (448)
96 2pfu_A Biopolymer transport EX 22.5 73 0.0025 22.0 3.3 56 61-122 38-93 (99)
97 2r8w_A AGR_C_1641P; APC7498, d 22.3 3.8E+02 0.013 23.2 10.0 130 61-204 51-186 (332)
98 1wde_A Probable diphthine synt 22.3 35 0.0012 29.3 1.8 39 79-124 83-121 (294)
99 2lqo_A Putative glutaredoxin R 22.1 45 0.0015 23.2 2.0 41 65-107 40-81 (92)
100 2p9j_A Hypothetical protein AQ 21.3 2.5E+02 0.0085 20.6 6.9 35 96-135 39-73 (162)
101 2wc7_A Alpha amylase, catalyti 21.2 64 0.0022 29.6 3.5 22 231-253 101-122 (488)
102 1xky_A Dihydrodipicolinate syn 20.8 3.2E+02 0.011 23.2 7.8 51 196-254 93-145 (301)
103 1w3i_A EDA, 2-keto-3-deoxy glu 20.6 3.9E+02 0.013 22.6 12.9 47 61-108 16-64 (293)
104 1ht6_A AMY1, alpha-amylase iso 20.5 1.3E+02 0.0046 26.7 5.5 55 197-252 21-87 (405)
105 3l21_A DHDPS, dihydrodipicolin 20.3 4E+02 0.014 22.7 11.8 126 61-203 32-166 (304)
106 3l23_A Sugar phosphate isomera 20.1 1.6E+02 0.0055 24.8 5.7 51 196-254 107-166 (303)
107 1pjq_A CYSG, siroheme synthase 20.1 87 0.003 28.7 4.1 53 62-122 277-329 (457)
108 1xky_A Dihydrodipicolinate syn 20.0 4E+02 0.014 22.6 11.4 46 61-107 29-76 (301)
No 1
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=100.00 E-value=1.2e-44 Score=335.58 Aligned_cols=253 Identities=43% Similarity=0.743 Sum_probs=213.1
Q ss_pred CCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc-------
Q 022752 5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------- 77 (292)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~------- 77 (292)
||..+|+|+||++. |.++++|++.|||++|.||+++.....+.++++|+++++......
T Consensus 100 dg~~iEtV~i~~~~--------------r~tlcVSsq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~g~~ 165 (404)
T 3rfa_A 100 GDQRVETVYIPEDD--------------RATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVT 165 (404)
T ss_dssp TTEEEEEEEEECSS--------------CEEEECCCEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCHHHH
T ss_pred CCceEEEEEEecCC--------------CceEEEEeCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhcccc
Confidence 79999999999864 489999999999999999999877777889999999998875432
Q ss_pred --CCcceEEEecCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhh
Q 022752 78 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 154 (292)
Q Consensus 78 --~~~~~I~fsG~GEPll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~ 154 (292)
.++..|+|+|+||||+|++++.++++.+++. |++++..+++++|||+.+.+.++++.. .+.+.||||+++++.|+.
T Consensus 166 gg~~i~~Ivf~GgGEPLln~d~v~~~i~~lk~~~Gl~~s~r~itlsTnG~~p~i~~L~~~~-d~~LaiSLka~d~e~~~~ 244 (404)
T 3rfa_A 166 GQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMI-DVALAISLHAPNDEIRDE 244 (404)
T ss_dssp SSCSCSEEEECSSSCGGGCHHHHHHHHHHHHSTTTTCCCGGGEEEEESCCHHHHHHHHHHC-CCEEEEECCCSSHHHHHH
T ss_pred cCCCccEEEEeCCCCcccCHHHHHHHHHHHHhhcCcCcCCCceEEECCCcHHHHHHHHHhh-cceEEecccCCCHHHHHH
Confidence 2478899996699999999999999999995 877777799999999987777888773 567889999999999999
Q ss_pred hcCcccCccHHHHHHHHHHHHHhhCC---eEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCc
Q 022752 155 IMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 231 (292)
Q Consensus 155 i~~~~~~~~~~~vi~~l~~~~~~~~~---~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~ 231 (292)
++|.+++++++++++++++++.+.+. ++++++++++|+||+.+++.+++++++.+++.|+++||+|. +...+.+|+
T Consensus 245 i~pv~~~~~le~vl~ai~~~~~~~g~~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~~~VnLIpynP~-~~~~~~~ps 323 (404)
T 3rfa_A 245 IVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPF-PGAPYGRSS 323 (404)
T ss_dssp HSGGGGTSCHHHHHHHHHHHHHHCTTTTTCEEEEEEEBTTTTCSHHHHHHHHHHTTTSCEEEEEEECCCC-TTCCCCBCC
T ss_pred hcCCccCCCHHHHHHHHHHHHHHhCCCcccEEEEEEEecCCCCCHHHHHHHHHHHHcCCCcEEEEeccCC-CCCCCCCCC
Confidence 99888889999999999888888777 89999999999999999999999999999888999999998 467899999
Q ss_pred HHHHHHHHHHHHhcCCeEEEeecccccccccccccccccCcCc
Q 022752 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274 (292)
Q Consensus 232 ~e~l~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~~~~~ 274 (292)
.+++++|+++++ ++|+.+.+|..+|.||.++|||+..+.-|+
T Consensus 324 ~e~i~~f~~iL~-~~Gi~vtiR~~~G~di~aaCGQL~~~~~~~ 365 (404)
T 3rfa_A 324 NSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAACGQLAGDVIDR 365 (404)
T ss_dssp HHHHHHHHHHHH-HTTCEEEECCCCCC----------------
T ss_pred HHHHHHHHHHHH-HcCCcEEEcCCCCcccccccccchhhhhhh
Confidence 999999999999 799999999999999999999998776554
No 2
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.95 E-value=3.6e-27 Score=204.62 Aligned_cols=211 Identities=18% Similarity=0.356 Sum_probs=165.1
Q ss_pred CCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCC---CCcCCCCHHHHHHHHHHhhcc--CCcceEEEecCCcccc
Q 022752 19 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLN 93 (292)
Q Consensus 19 ~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~---~~~~~~~~eei~~~i~~~~~~--~~~~~I~fsG~GEPll 93 (292)
.|+.+|| ||.+.+++ |.+||++|.||+.+.. ...+.++++++++.+.+.... .++..|.|+| |||++
T Consensus 11 ~~~~~~~----pg~~~~i~---t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~G-GEP~l 82 (245)
T 3c8f_A 11 SCGTVDG----PGIRFITF---FQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASG-GEAIL 82 (245)
T ss_dssp EEECTTS----SSEEEEEE---ESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEE-SCGGG
T ss_pred eccccCC----CCcEEEEE---eCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEEC-CCcCC
Confidence 3557788 77655543 3799999999998642 234567889999888765432 1357899999 99999
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch--h-h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHH
Q 022752 94 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--H-A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 169 (292)
Q Consensus 94 ~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~--~-~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~ 169 (292)
+++.+.++++++++.| ..+.+.|||++ . + +.++.+. ...+.||+|+.+++.++.+++. +++++++
T Consensus 83 ~~~~l~~l~~~~~~~~-----~~i~i~Tng~~~~~~~~~~~l~~~--~~~v~isld~~~~~~~~~~~~~----~~~~~~~ 151 (245)
T 3c8f_A 83 QAEFVRDWFRACKKEG-----IHTCLDTNGFVRRYDPVIDELLEV--TDLVMLDLKQMNDEIHQNLVGV----SNHRTLE 151 (245)
T ss_dssp GHHHHHHHHHHHHTTT-----CCEEEEECCCCCCCCHHHHHHHHT--CSEEEEECCCSSHHHHHHHHSS----CSHHHHH
T ss_pred CHHHHHHHHHHHHHcC-----CcEEEEeCCCcCcCHHHHHHHHHh--CCEEEEeCCCCCHHHhhhccCC----CHHHHHH
Confidence 9777899999999987 57999999975 2 2 4455543 2357899999999999988542 4589999
Q ss_pred HHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCc-E-EEEEecCCCCC-----------CCCcCCCcHHHHH
Q 022752 170 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-V-VNLIPFNPIGS-----------VSQFRTSSDDKVS 236 (292)
Q Consensus 170 ~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~-~-v~l~p~~p~~~-----------~~~~~~~~~e~l~ 236 (292)
+++ .+.+.|..+.+++++++|.|++.+++.++++++++++. . +.+.||.|.+. ...+++++.+++.
T Consensus 152 ~i~-~l~~~g~~v~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 230 (245)
T 3c8f_A 152 FAK-YLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETME 230 (245)
T ss_dssp HHH-HHHHHTCCEEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHH
T ss_pred HHH-HHHhcCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhHHHhhCcccccccCCCCCHHHHH
Confidence 994 56677889999999999999999999999999999984 4 88999998641 2245678999999
Q ss_pred HHHHHHHhcCCeEE
Q 022752 237 SFQKILRGSYNIRT 250 (292)
Q Consensus 237 ~~~~~l~~~~g~~v 250 (292)
++.+.++ +.|+.+
T Consensus 231 ~~~~~~~-~~G~~v 243 (245)
T 3c8f_A 231 RVKGILE-QYGHKV 243 (245)
T ss_dssp HHHHHHH-TTTCCB
T ss_pred HHHHHHH-hcCCee
Confidence 9999999 788764
No 3
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.93 E-value=2e-24 Score=197.66 Aligned_cols=209 Identities=16% Similarity=0.183 Sum_probs=160.3
Q ss_pred CceEEEEEcC-CCCCcCCcCcCCCCCC------CcCCCCHHHHHHHHHHhhcc-------------------CCcceEEE
Q 022752 32 PRSTLCISSQ-VGCKMGCNFCATGTMG------FKSNLSSGEIVEQLVHASRL-------------------SNIRNVVF 85 (292)
Q Consensus 32 ~r~~l~is~t-~gCNl~C~yC~~~~~~------~~~~~~~eei~~~i~~~~~~-------------------~~~~~I~f 85 (292)
.+..+.++++ .|||++|.||+++... ..+.++++++++++.+.... ..+..|+|
T Consensus 68 ~~~~l~i~~~~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~ 147 (342)
T 2yx0_A 68 SHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAI 147 (342)
T ss_dssp GGGEEEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEE
T ss_pred CCCeEEEEeChhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEE
Confidence 4466788777 6999999999986432 34568899999888764221 12467999
Q ss_pred e-cCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh-HHHHhhhC-CCceEEEEecCCChHHHhhhcCcccCc
Q 022752 86 M-GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAF 162 (292)
Q Consensus 86 s-G~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~-~~~l~~~~-~~~~l~iSld~~~~~~~~~i~~~~~~~ 162 (292)
+ | ||||+++ .+.++++++++.| ..+.+.|||++++ +.++.+.+ ....+.||+|+.+++.++.+++.+..+
T Consensus 148 sgg-GEPll~~-~l~~ll~~~~~~g-----~~i~l~TNG~~~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~ 220 (342)
T 2yx0_A 148 SLS-GEPMLYP-YMGDLVEEFHKRG-----FTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPD 220 (342)
T ss_dssp CSS-SCGGGST-THHHHHHHHHHTT-----CEEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSC
T ss_pred cCC-Ccccchh-hHHHHHHHHHHCC-----CcEEEEcCCCcHHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCccc
Confidence 8 6 9999985 7999999999887 6899999998865 45665542 236788999999999999998765567
Q ss_pred cHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCC----CCcCCCcHHHHHH
Q 022752 163 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSV----SQFRTSSDDKVSS 237 (292)
Q Consensus 163 ~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~----~~~~~~~~e~l~~ 237 (292)
++++++++++ .+.+.+..+.+++++++|.|++ ++++++++++++++. +++.||+|.+.. ..+..++.+++.+
T Consensus 221 ~~~~~~~~i~-~l~~~g~~v~i~~~l~~g~n~~--~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~ 297 (342)
T 2yx0_A 221 GWERILRFLE-LMRDLPTRTVVRLTLVKGENMH--SPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIRE 297 (342)
T ss_dssp HHHHHHHHHH-HHTTCSSEEEEEEEECTTTTCC--CHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHH
T ss_pred HHHHHHHHHH-HHHhCCCCEEEEEEEECCccHH--HHHHHHHHHHHcCCCEEEEEeeeecCCCcccccccCCCCHHHHHH
Confidence 8999999994 5566788999999999998876 489999999998765 888999986521 1355788999999
Q ss_pred HHHHHHhcC-CeEE
Q 022752 238 FQKILRGSY-NIRT 250 (292)
Q Consensus 238 ~~~~l~~~~-g~~v 250 (292)
+.+.+.+.. ++++
T Consensus 298 ~~~~l~~~l~~~~I 311 (342)
T 2yx0_A 298 FAEALVKHLPGYHI 311 (342)
T ss_dssp HHHHHHTTCTTEEE
T ss_pred HHHHHHHhccCCce
Confidence 999998332 4554
No 4
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.93 E-value=1.2e-23 Score=192.18 Aligned_cols=177 Identities=16% Similarity=0.265 Sum_probs=139.9
Q ss_pred eEEEEEcCCCCCcCCcCcCCCC-----C---CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHH
Q 022752 34 STLCISSQVGCKMGCNFCATGT-----M---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM 105 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~-----~---~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~ 105 (292)
..+.+++|.+||++|.||+.+. . .....++.+++.+.+..... .++..|.|+| ||||++++ +.++++++
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~-~g~~~i~~tG-GEPll~~~-l~~li~~~ 90 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE-LGVKKIRITG-GEPLMRRD-LDVLIAKL 90 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH-TTCCEEEEES-SCGGGSTT-HHHHHHHH
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHH-CCCCEEEEeC-CCccchhh-HHHHHHHH
Confidence 4677788999999999998865 1 12346888888877776654 4788999999 99999854 78999999
Q ss_pred hCCCCCCCCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEE
Q 022752 106 TGLPFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183 (292)
Q Consensus 106 ~~~g~~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~ 183 (292)
++.+. ...+.++|||++.. +..+.+.+ ...+.||+|+.+++.++.+++. ..++++++++++ .+.+.+..+.
T Consensus 91 ~~~~~---~~~i~i~TNG~ll~~~~~~L~~~g-~~~v~iSld~~~~~~~~~i~~~--~~~~~~v~~~i~-~l~~~g~~v~ 163 (340)
T 1tv8_A 91 NQIDG---IEDIGLTTNGLLLKKHGQKLYDAG-LRRINVSLDAIDDTLFQSINNR--NIKATTILEQID-YATSIGLNVK 163 (340)
T ss_dssp TTCTT---CCEEEEEECSTTHHHHHHHHHHHT-CCEEEEECCCSSHHHHHHHHSS--CCCHHHHHHHHH-HHHHTTCEEE
T ss_pred HhCCC---CCeEEEEeCccchHHHHHHHHHCC-CCEEEEecCCCCHHHHHHhhCC--CCCHHHHHHHHH-HHHHCCCCEE
Confidence 98741 12899999998753 34555544 3568899999999999888543 238999999995 5667788999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCC
Q 022752 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 222 (292)
Q Consensus 184 i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~ 222 (292)
++++++++.|+ +++.++++++.++++.+.++.+.|.+
T Consensus 164 i~~vv~~g~n~--~ei~~~~~~~~~~g~~~~~i~~~p~~ 200 (340)
T 1tv8_A 164 VNVVIQKGIND--DQIIPMLEYFKDKHIEIRFIEFMDVG 200 (340)
T ss_dssp EEEEECTTTTG--GGHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred EEEEEeCCCCH--HHHHHHHHHHHhcCCeEEEEEeeEcC
Confidence 99999998766 47999999999999888888888875
No 5
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.92 E-value=1.3e-24 Score=196.06 Aligned_cols=204 Identities=18% Similarity=0.226 Sum_probs=142.7
Q ss_pred CceEEEEEcC-CCCCcCCcCcCCCCCC----------CcCCCCHHHHHHHHHHhhc-----c---------------CCc
Q 022752 32 PRSTLCISSQ-VGCKMGCNFCATGTMG----------FKSNLSSGEIVEQLVHASR-----L---------------SNI 80 (292)
Q Consensus 32 ~r~~l~is~t-~gCNl~C~yC~~~~~~----------~~~~~~~eei~~~i~~~~~-----~---------------~~~ 80 (292)
....+.++++ .|||++|.||+++... ..+.++++++++++.+... + ..+
T Consensus 49 ~~~~l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~ 128 (311)
T 2z2u_A 49 THRCIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEP 128 (311)
T ss_dssp GGGEEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSC
T ss_pred CCCeEEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCC
Confidence 4566888888 6999999999976311 2356889999987765421 0 124
Q ss_pred ceEEEe-cCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCcc
Q 022752 81 RNVVFM-GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 159 (292)
Q Consensus 81 ~~I~fs-G~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~ 159 (292)
..|+|+ | ||||++ +.+.++++++++.| ..+.+.|||++++ . ++.+....+.||+|+.+++.|+.+++.
T Consensus 129 ~~i~~s~g-GEPll~-~~l~~li~~~~~~g-----~~~~l~TNG~~~~--~-l~~L~~~~v~isld~~~~~~~~~i~~~- 197 (311)
T 2z2u_A 129 KHVAISLS-GEPTLY-PYLDELIKIFHKNG-----FTTFVVSNGILTD--V-IEKIEPTQLYISLDAYDLDSYRRICGG- 197 (311)
T ss_dssp CEEEECSS-SCGGGS-TTHHHHHHHHHHTT-----CEEEEEECSCCHH--H-HHHCCCSEEEEECCCSSTTTC----CC-
T ss_pred CEEEEeCC-cCccch-hhHHHHHHHHHHCC-----CcEEEECCCCCHH--H-HHhCCCCEEEEEeecCCHHHHHHHhCC-
Confidence 579999 7 999997 56999999999887 6899999999843 2 222233568899999999999988754
Q ss_pred cCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCC----CcCCCcHHH
Q 022752 160 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS----QFRTSSDDK 234 (292)
Q Consensus 160 ~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~----~~~~~~~e~ 234 (292)
...++++++++++ .+.+.+ .+.+++++++|.|+ ++.+++++++++++. +.+.||+|.+... ....++.++
T Consensus 198 ~~~~~~~v~~~i~-~l~~~g-~v~i~~~~~~g~n~---~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~~~~~~~~~~~~e 272 (311)
T 2z2u_A 198 KKEYWESILNTLD-ILKEKK-RTCIRTTLIRGYND---DILKFVELYERADVHFIELKSYMHVGYSQKRLKKEDMLQHDE 272 (311)
T ss_dssp CHHHHHHHHHHHH-HHTTSS-SEEEEEEECTTTTC---CGGGTHHHHHHHTCSEEEEEECC------------CCCCHHH
T ss_pred ccchHHHHHHHHH-HHHhcC-CEEEEEEEECCcch---hHHHHHHHHHHcCCCEEEEEeeEEccccccccccccCCCHHH
Confidence 3368999999995 455667 89999999999888 688899999888765 8999999975221 125788999
Q ss_pred HHHHHHHHHhcCCeEEE
Q 022752 235 VSSFQKILRGSYNIRTT 251 (292)
Q Consensus 235 l~~~~~~l~~~~g~~v~ 251 (292)
+.++.+.+.+..|+.+.
T Consensus 273 ~~~~~~~l~~~~g~~~~ 289 (311)
T 2z2u_A 273 ILKLAKMLDENSSYKLI 289 (311)
T ss_dssp HHHHHHHHHTSSSEEEE
T ss_pred HHHHHHHHHHhcCceEE
Confidence 99999999844687654
No 6
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=99.87 E-value=2.9e-21 Score=160.95 Aligned_cols=158 Identities=19% Similarity=0.372 Sum_probs=126.4
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCc
Q 022752 81 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 158 (292)
Q Consensus 81 ~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~ 158 (292)
..|+|+| ||||++++.+.++++++++.| ..+.+.|||++.. +.++.+. ...+.||+|+.+++.|+.+++.
T Consensus 5 ~~v~~tG-GEPll~~~~~~~l~~~~~~~g-----~~~~l~TNG~l~~~~~~~l~~~--~d~v~isld~~~~~~~~~~~g~ 76 (182)
T 3can_A 5 GGVTFCG-GEPLLHPEFLIDILKRCGQQG-----IHRAVDTTLLARKETVDEVMRN--CELLLIDLKSMDSTVHQTFCDV 76 (182)
T ss_dssp CCEEECS-STGGGSHHHHHHHHHHHHHTT-----CCEEEECTTCCCHHHHHHHHHT--CSEEEEECCCSCHHHHHHHHSS
T ss_pred CEEEEEc-ccccCCHHHHHHHHHHHHHCC-----CcEEEECCCCCCHHHHHHHHhh--CCEEEEECCCCCHHHHHHHhCC
Confidence 5899999 999999876689999999987 6899999998642 3444443 2457799999999999988642
Q ss_pred ccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhC-Cc--EEEEEecCCCCCC-----------
Q 022752 159 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-QV--VVNLIPFNPIGSV----------- 224 (292)
Q Consensus 159 ~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~-~~--~v~l~p~~p~~~~----------- 224 (292)
++++++++++. +.+.+..+.+++++++++|++.+++.++++++.++ ++ .+.++||+|.+..
T Consensus 77 ----~~~~i~~~i~~-l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~~~~l~~~y~~ 151 (182)
T 3can_A 77 ----PNELILKNIRR-VAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNP 151 (182)
T ss_dssp ----CSHHHHHHHHH-HHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC---------------
T ss_pred ----CHHHHHHHHHH-HHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHHHHHhCCcCcc
Confidence 46899999954 55678899999999999999999999999999998 86 4999999997632
Q ss_pred CCcCCCcHHH--HHHHHHHHHhcCCeEEEe
Q 022752 225 SQFRTSSDDK--VSSFQKILRGSYNIRTTV 252 (292)
Q Consensus 225 ~~~~~~~~e~--l~~~~~~l~~~~g~~v~i 252 (292)
.++++++.++ ++++++.++ ++|+.+.+
T Consensus 152 ~~~~~~~~e~~~l~~~~~~~~-~~g~~~~i 180 (182)
T 3can_A 152 KGYKMQTPSEEVQQQCIQILT-DYGLKATI 180 (182)
T ss_dssp ---CCBCCCHHHHHHHHHHHH-HTTCCEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHH-HcCCceEe
Confidence 2245677777 999999999 78988766
No 7
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.85 E-value=1.5e-19 Score=169.25 Aligned_cols=191 Identities=15% Similarity=0.163 Sum_probs=135.1
Q ss_pred EEEEEcCCCCCcCCcCcCCCCCCC--cCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHH-HHHHHHHHHhCCCCC
Q 022752 35 TLCISSQVGCKMGCNFCATGTMGF--KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYA-ALVEAVRIMTGLPFQ 111 (292)
Q Consensus 35 ~l~is~t~gCNl~C~yC~~~~~~~--~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~-~i~ell~~~~~~g~~ 111 (292)
.+.+.+|.+||++|.||+.+.... ...++.+++.+.+..+....++..|.|+| ||||++++ .+.++++.+++.+ +
T Consensus 116 ~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltG-GEPll~~d~~L~~il~~l~~~~-~ 193 (416)
T 2a5h_A 116 RVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSG-GDALLVSDETLEYIIAKLREIP-H 193 (416)
T ss_dssp EEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEE-SCTTSSCHHHHHHHHHHHHTST-T
T ss_pred EEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEEC-CCCCCCCHHHHHHHHHHHHhcC-C
Confidence 344555799999999999975332 24688888877777665435788999999 99999865 5899999999872 1
Q ss_pred CCCCeEEEEcCC-c-h-----hhHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEE
Q 022752 112 VSPKRITVSTVG-I-V-----HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 184 (292)
Q Consensus 112 ~~~~~i~l~TNG-~-~-----~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i 184 (292)
...+.+.||| + + .+..+.+... ..+.||+++.++ +.+ + ++++++++ .+++.|..+.+
T Consensus 194 --v~~i~i~Tng~~~~p~~it~e~l~~L~~~--~~v~Isl~~~~~---~ei-------~-~~v~~ai~-~L~~aGi~v~i 257 (416)
T 2a5h_A 194 --VEIVRIGSRTPVVLPQRITPELVNMLKKY--HPVWLNTHFNHP---NEI-------T-EESTRACQ-LLADAGVPLGN 257 (416)
T ss_dssp --CCEEEEECSHHHHCGGGCCHHHHHHHGGG--CSEEEEECCCSG---GGC-------C-HHHHHHHH-HHHHTTCCEEE
T ss_pred --ccEEEEEecccccccccCCHHHHHHHHhc--CcEEEEEecCCH---HHH-------h-HHHHHHHH-HHHHcCCEEEE
Confidence 1378999999 2 1 1222222222 457789988766 233 2 78899994 56677889999
Q ss_pred EEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHHHHHHHHHH
Q 022752 185 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 185 ~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~ 243 (292)
++++++|+||+.+++.++++++.++++....+.+.|.+.+..+...+..+..++.+.++
T Consensus 258 ~~vll~GvNd~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~~~~~~~~~eil~~l~ 316 (416)
T 2a5h_A 258 QSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLR 316 (416)
T ss_dssp EEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGCCCHHHHHHHHHTTB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeecCCCCCcccccCCcccHHHHHHHHH
Confidence 99999999999999999999999999875555555543333333345555555555554
No 8
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.83 E-value=6.9e-19 Score=160.87 Aligned_cols=191 Identities=15% Similarity=0.189 Sum_probs=145.5
Q ss_pred EEcCCCCCcCCcCcCCCCCCC---cCCCCHHHHHHHHHHhhccCCcceEEEecCCc-cccCHHHHHHHHHHHhCCCCCCC
Q 022752 38 ISSQVGCKMGCNFCATGTMGF---KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNNYAALVEAVRIMTGLPFQVS 113 (292)
Q Consensus 38 is~t~gCNl~C~yC~~~~~~~---~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE-Pll~~~~i~ell~~~~~~g~~~~ 113 (292)
++.|.+||++|.||+.+.... ...++++++++.+.+... .++..|.|+| || |+++++.+.++++.+++.+
T Consensus 57 i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~-~g~~~i~~~g-Ge~p~~~~~~~~~li~~i~~~~---- 130 (348)
T 3iix_A 57 IEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQ-FGAKTIVLQS-GEDPYXMPDVISDIVKEIKKMG---- 130 (348)
T ss_dssp EEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHH-TTCSEEEEEE-SCCGGGTTHHHHHHHHHHHTTS----
T ss_pred eEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHH-CCCCEEEEEe-CCCCCccHHHHHHHHHHHHhcC----
Confidence 666899999999998754321 124799999999988655 3788999999 99 9998889999999999875
Q ss_pred CCeEEEEcCCch-hh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCC
Q 022752 114 PKRITVSTVGIV-HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG 191 (292)
Q Consensus 114 ~~~i~l~TNG~~-~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g 191 (292)
..+++ |+|.+ .+ +..+.+.+ ...+.+++++.+++.++.+.+. .+++++++++ +.+++.|.. +.+.++.|
T Consensus 131 -~~i~~-s~g~l~~e~l~~L~~ag-~~~v~i~let~~~~~~~~i~~~---~~~~~~~~~i-~~~~~~Gi~--v~~~~i~G 201 (348)
T 3iix_A 131 -VAVTL-SLGEWPREYYEKWKEAG-ADRYLLRHETANPVLHRKLRPD---TSFENRLNCL-LTLKELGYE--TGAGSMVG 201 (348)
T ss_dssp -CEEEE-ECCCCCHHHHHHHHHHT-CCEEECCCBCSCHHHHHHHSTT---SCHHHHHHHH-HHHHHTTCE--EEECBEES
T ss_pred -ceEEE-ecCCCCHHHHHHHHHhC-CCEEeeeeeeCCHHHHHHhCCC---cCHHHHHHHH-HHHHHhCCe--eccceEEe
Confidence 56664 45543 33 45666655 3567789999999999998654 4899999999 557777775 55556667
Q ss_pred C-CChHHHHHHHHHHHhhCCcE-EEEEecCCCC--CCCCcCCCcHHHHHHHHHHHH
Q 022752 192 V-NDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 192 ~-nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~--~~~~~~~~~~e~l~~~~~~l~ 243 (292)
. +++.+++.++++++.++++. +.+.+|.|.. +....++++.+++.++.+.++
T Consensus 202 ~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~~~~~~~~e~~~~~a~~R 257 (348)
T 3iix_A 202 LPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTR 257 (348)
T ss_dssp CTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCCcccCCCCCHHHHHHHHHHHH
Confidence 6 78899999999999998876 7888888874 234455677777777666555
No 9
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.74 E-value=4.3e-16 Score=143.66 Aligned_cols=192 Identities=10% Similarity=0.118 Sum_probs=141.1
Q ss_pred EEE-cCCCCCcCCcCcCCCCCC-----CcCCCCHHHHHHHHHHhhccCCcceEEEecCC-ccc-cCHHHHHHHHHHHhCC
Q 022752 37 CIS-SQVGCKMGCNFCATGTMG-----FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPL-NNYAALVEAVRIMTGL 108 (292)
Q Consensus 37 ~is-~t~gCNl~C~yC~~~~~~-----~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~G-EPl-l~~~~i~ell~~~~~~ 108 (292)
.++ .+.+||++|.||+.+... ....++++++++.+.+... .++..|.|+|.| ||. +..+.+.++++.+++.
T Consensus 68 ~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~~~gg~~~p~~~~~~~l~~ll~~ik~~ 146 (369)
T 1r30_A 68 LLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA-AGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAM 146 (369)
T ss_dssp EEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHH-TTCSEEEEEECCSSCCTTTHHHHHHHHHHHHHT
T ss_pred EEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHH-cCCcEEEEEeCCCCCCcCCHHHHHHHHHHHHHc
Confidence 344 379999999999886421 1245789999998887654 368889998822 465 4578899999999987
Q ss_pred CCCCCCCeEEEEcCCchhh--HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEE
Q 022752 109 PFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 186 (292)
Q Consensus 109 g~~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~ 186 (292)
+ ..+++ |||++.. +..+.+.+ ...+.+++++ +++.++.+.+ ..++++++++++ .+++.|.. +.+
T Consensus 147 g-----~~i~~-t~G~l~~e~l~~L~~aG-vd~v~i~les-~~e~~~~i~~---~~~~~~~l~~i~-~a~~~Gi~--v~~ 212 (369)
T 1r30_A 147 G-----LEACM-TLGTLSESQAQRLANAG-LDYYNHNLDT-SPEFYGNIIT---TRTYQERLDTLE-KVRDAGIK--VCS 212 (369)
T ss_dssp T-----SEEEE-ECSSCCHHHHHHHHHHC-CCEEECCCBS-CHHHHHHHCC---SSCHHHHHHHHH-HHHHHHCE--EEC
T ss_pred C-----CeEEE-ecCCCCHHHHHHHHHCC-CCEEeecCcC-CHHHHHHhCC---CCCHHHHHHHHH-HHHHcCCe--eee
Confidence 6 46664 8997532 55666664 3567789999 8999998864 368999999995 45666664 455
Q ss_pred EEeCCCCChHHHHHHHHHHHhhCC--c-EEEEEecCCCC--CCCCcCCCcHHHHHHHHHHHH
Q 022752 187 IMLDGVNDEEQHAHQLGKLLETFQ--V-VVNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 187 vl~~g~nd~~~~l~~l~~~l~~~~--~-~v~l~p~~p~~--~~~~~~~~~~e~l~~~~~~l~ 243 (292)
.++.|.+++.+++.++++++.+++ + .+.+.+|.|.+ +.....+++.+++.++.+.++
T Consensus 213 ~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~~~~~~r 274 (369)
T 1r30_A 213 GGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVAR 274 (369)
T ss_dssp CEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHH
T ss_pred eeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHHHHHHHHHH
Confidence 677788899999999999999986 4 37777787764 233445678888777666554
No 10
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.72 E-value=2.5e-16 Score=144.22 Aligned_cols=193 Identities=20% Similarity=0.193 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCCC-C-cCCCCHHHHHHHHHHhhccCCcceEEEecCCc-cccC--HHHHHHHHHHHhCC
Q 022752 34 STLCISSQVGCKMGCNFCATGTMG-F-KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNN--YAALVEAVRIMTGL 108 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~~-~-~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GE-Pll~--~~~i~ell~~~~~~ 108 (292)
+...++.|.+||++|.||...... . ...++++++++++.+... .++..|.|+| || |+.+ .+.+.++++.+++.
T Consensus 61 ~~~~i~~t~~C~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~-~G~~~i~l~g-Ge~p~~~~~~~~~~~l~~~ik~~ 138 (350)
T 3t7v_A 61 LNCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKG-AGFHMVDLTM-GEDPYYYEDPNRFVELVQIVKEE 138 (350)
T ss_dssp EEEEEEEECCCCCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTT-SCCSEEEEEE-CCCHHHHHSTHHHHHHHHHHHHH
T ss_pred EEEeeecCCCcCCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHH-CCCCEEEEee-CCCCccccCHHHHHHHHHHHHhh
Confidence 334566689999999999874322 1 224799999999988765 4789999999 98 8874 67889999999865
Q ss_pred -CCCCCCCeEEEEcCCch-hh-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEE
Q 022752 109 -PFQVSPKRITVSTVGIV-HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 185 (292)
Q Consensus 109 -g~~~~~~~i~l~TNG~~-~~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~ 185 (292)
+ ..+.++ .|.. .+ +.++.+++ ...+.+++++.+++.++.+.+ +.++++.++.+ +.+++.|..+.
T Consensus 139 ~~-----i~i~~s-~g~~~~e~l~~L~~aG-~~~i~i~lEt~~~~~~~~i~~---~~~~~~~l~~i-~~a~~~Gi~v~-- 205 (350)
T 3t7v_A 139 LG-----LPIMIS-PGLMDNATLLKAREKG-ANFLALYQETYDTELYRKLRV---GQSFDGRVNAR-RFAKQQGYCVE-- 205 (350)
T ss_dssp HC-----SCEEEE-CSSCCHHHHHHHHHTT-EEEEECCCBCSCHHHHHHHST---TCCHHHHHHHH-HHHHHHTCEEE--
T ss_pred cC-----ceEEEe-CCCCCHHHHHHHHHcC-CCEEEEeeecCCHHHHHHhCC---CCCHHHHHHHH-HHHHHcCCeEc--
Confidence 4 456554 4543 22 55666654 234668999999999999865 36899999999 56777887644
Q ss_pred EEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCC--CCCCcCCCcHHHHHHHHHH
Q 022752 186 YIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKI 241 (292)
Q Consensus 186 ~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~--~~~~~~~~~~e~l~~~~~~ 241 (292)
+.++-|.+++.+++.+.++++.++++. +.+.+|.|.. +....++++.+++.++.+.
T Consensus 206 ~~~i~Glget~e~~~~~l~~l~~l~~~~v~~~~f~p~~gT~l~~~~~~~~~e~l~~ia~ 264 (350)
T 3t7v_A 206 DGILTGVGNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPLEGFRDKSNLSELKIISV 264 (350)
T ss_dssp EEEEESSSCCHHHHHHHHHHHHHTCCSEEEEEECCCCTTSTTTTCCCCCCCCHHHHHHH
T ss_pred cceEeecCCCHHHHHHHHHHHHhCCCCEEEecceeeCCCCcCccCCCCChHHHHHHHHH
Confidence 455667789999999999999999876 8899999863 2233344454444444333
No 11
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=99.63 E-value=2.2e-14 Score=128.90 Aligned_cols=178 Identities=15% Similarity=0.210 Sum_probs=115.7
Q ss_pred eEEEEEcCCCCCcCCcCcCCCCC-CCcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccC------HHHHHHHHHHHh
Q 022752 34 STLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN------YAALVEAVRIMT 106 (292)
Q Consensus 34 ~~l~is~t~gCNl~C~yC~~~~~-~~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~------~~~i~ell~~~~ 106 (292)
..+++.++.|||++|.||..+.. +..+.++++++++++..... .++..|.|+| ++++.+ .+.+.++++.++
T Consensus 4 ~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~-~G~~ei~l~g-~~~~~yG~~~~~~~~l~~Ll~~l~ 81 (304)
T 2qgq_A 4 PYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLK-EGKKEIILVA-QDTTSYGIDLYRKQALPDLLRRLN 81 (304)
T ss_dssp SEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHH-TTCCEEEEEC-TTGGGTTHHHHSSCCHHHHHHHHH
T ss_pred EEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHH-CCCcEEEEEe-EcccccCCCCCcHHHHHHHHHHHH
Confidence 56777778999999999988643 23466889999999988655 3788999999 776653 246889999998
Q ss_pred CC-CCCCCCCeEEE-EcCCch--hh-HHHHhhhCC-CceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHh-hC
Q 022752 107 GL-PFQVSPKRITV-STVGIV--HA-INKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN-SQ 179 (292)
Q Consensus 107 ~~-g~~~~~~~i~l-~TNG~~--~~-~~~l~~~~~-~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~-~~ 179 (292)
+. | + ..+.+ ++|+.. .+ +..+.+.+. ...+.+++++.+++.++.+. +..+.++++++++.+.+. .+
T Consensus 82 ~~~g--i--~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~---r~~t~e~~~~~i~~l~~~~~g 154 (304)
T 2qgq_A 82 SLNG--E--FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMG---RTKSSEELKKMLSSIRERFPD 154 (304)
T ss_dssp TSSS--S--CEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTT---CCSCHHHHHHHHHHHHHHCTT
T ss_pred hcCC--C--cEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhC---CCCCHHHHHHHHHHHHhhCCC
Confidence 86 4 2 24554 467643 22 334444331 24577899999999998874 357889999999554332 35
Q ss_pred CeEEEEEEEeCCC-CChHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 022752 180 QKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 222 (292)
Q Consensus 180 ~~v~i~~vl~~g~-nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~ 222 (292)
.. +.+.++-|+ +++++++.++++++.++++. +.+.+|.|..
T Consensus 155 i~--i~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~p 197 (304)
T 2qgq_A 155 AV--LRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEE 197 (304)
T ss_dssp CE--EEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC--
T ss_pred CE--EEEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCC
Confidence 54 444444444 57889999999999998875 8888888763
No 12
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.47 E-value=5.5e-12 Score=119.36 Aligned_cols=209 Identities=12% Similarity=0.169 Sum_probs=140.4
Q ss_pred CCceEEEEEcCCCCCcCCcCcCCCCCC-CcC---CCCHHHHHHHHHHhhcc---CCcceEEEecCCcccc-CHHHHHHHH
Q 022752 31 GPRSTLCISSQVGCKMGCNFCATGTMG-FKS---NLSSGEIVEQLVHASRL---SNIRNVVFMGMGEPLN-NYAALVEAV 102 (292)
Q Consensus 31 ~~r~~l~is~t~gCNl~C~yC~~~~~~-~~~---~~~~eei~~~i~~~~~~---~~~~~I~fsG~GEPll-~~~~i~ell 102 (292)
.....+++.+ ..|+.+|.||...... ... ....+.+.+++...... ..+..|.|.| |+|++ ..+.+.+++
T Consensus 50 ~~~~~lYihI-pfC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgG-Gtpt~l~~~~l~~ll 127 (457)
T 1olt_A 50 ERPLSLYVHI-PFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGG-GTPTYLNKAQISRLM 127 (457)
T ss_dssp TSCEEEEEEE-CEESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEE-SCGGGSCHHHHHHHH
T ss_pred CCceEEEEEc-CCCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeC-CCcccCCHHHHHHHH
Confidence 4457788877 4799999999875421 111 12245667777654332 2467899999 99985 677899999
Q ss_pred HHHhCCCCCC-CCCeEEEEcCCchh--h-HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh
Q 022752 103 RIMTGLPFQV-SPKRITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 178 (292)
Q Consensus 103 ~~~~~~g~~~-~~~~i~l~TNG~~~--~-~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~ 178 (292)
+.+++. +++ ....+++.||.... + +..+.+.+ ...+.+++++.+++..+.+.+ ..+.+++++++ +.+++.
T Consensus 128 ~~i~~~-~~~~~~~eitie~~p~~l~~e~l~~L~~~G-~~rislGvQS~~~~~l~~i~R---~~~~~~~~~ai-~~~r~~ 201 (457)
T 1olt_A 128 KLLREN-FQFNADAEISIEVDPREIELDVLDHLRAEG-FNRLSMGVQDFNKEVQRLVNR---EQDEEFIFALL-NHAREI 201 (457)
T ss_dssp HHHHHH-SCEEEEEEEEEEECSSSCCTHHHHHHHHTT-CCEEEEEEECCCHHHHHHHTC---CCCHHHHHHHH-HHHHHT
T ss_pred HHHHHh-CCCCCCcEEEEEEccCcCCHHHHHHHHHcC-CCEEEEeeccCCHHHHHHhCC---CCCHHHHHHHH-HHHHHc
Confidence 999873 111 01578899998432 2 44555544 456889999999999998853 46899999999 556677
Q ss_pred CCe-EEEEEEE-eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCC-------CcCCCcHHH----HHHHHHHHHh
Q 022752 179 QQK-IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS-------QFRTSSDDK----VSSFQKILRG 244 (292)
Q Consensus 179 ~~~-v~i~~vl-~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~-------~~~~~~~e~----l~~~~~~l~~ 244 (292)
|.. +.+.+++ +|| ++.+++.+.++++.++++. +.+.++.+.+... ....|+.++ +..+.+.+.
T Consensus 202 G~~~v~~dlI~GlPg--et~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~- 278 (457)
T 1olt_A 202 GFTSTNIDLIYGLPK--QTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLT- 278 (457)
T ss_dssp TCCSCEEEEEESCTT--CCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHH-
T ss_pred CCCcEEEEEEcCCCC--CCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHH-
Confidence 776 6666554 455 5788999999999999876 8888877543111 223455443 333445566
Q ss_pred cCCeEE
Q 022752 245 SYNIRT 250 (292)
Q Consensus 245 ~~g~~v 250 (292)
..|+..
T Consensus 279 ~~Gy~~ 284 (457)
T 1olt_A 279 QSGYQF 284 (457)
T ss_dssp HTTCEE
T ss_pred HCCCeE
Confidence 577753
No 13
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=98.50 E-value=8.5e-07 Score=80.82 Aligned_cols=159 Identities=14% Similarity=0.142 Sum_probs=102.1
Q ss_pred EEEcCCCCCcCCcCcCCC-CCCCc----CCCCHHHHHHHHHHhh-c-cCCcceEEEecCCccccCHH----HHHHHHHHH
Q 022752 37 CISSQVGCKMGCNFCATG-TMGFK----SNLSSGEIVEQLVHAS-R-LSNIRNVVFMGMGEPLNNYA----ALVEAVRIM 105 (292)
Q Consensus 37 ~is~t~gCNl~C~yC~~~-~~~~~----~~~~~eei~~~i~~~~-~-~~~~~~I~fsG~GEPll~~~----~i~ell~~~ 105 (292)
.++...||.++|.||+.. ..+.. -....+++++++.+.. . ......|.++++.||+. .+ .+.++++.+
T Consensus 110 ~ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp-~E~~~~ltr~~le~l 188 (368)
T 4fhd_A 110 AIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVG-IDHLTHSLKKAIEFI 188 (368)
T ss_dssp ECCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHH-HHTTTCHHHHHHHHH
T ss_pred eeCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcch-hhHHHhHHHHHHHHH
Confidence 355678999999999873 22111 2356788888876532 1 12334677777779963 33 356777787
Q ss_pred hCCCCCCCCCeEEEEcCCchhhHHHHhhh--CCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEE
Q 022752 106 TGLPFQVSPKRITVSTVGIVHAINKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183 (292)
Q Consensus 106 ~~~g~~~~~~~i~l~TNG~~~~~~~l~~~--~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~ 183 (292)
.+.+ ...+.+.|-+.+.+ .|.+. ...+.+.+||.. ++..+.+-+. ..+.++-++++++ +.+.|.++.
T Consensus 189 ~~~~----~~~v~i~TKs~lid--~L~~l~~~~~v~V~~Sitt--~~l~r~~EP~--aps~~~RL~Ai~~-l~~aGipv~ 257 (368)
T 4fhd_A 189 GATD----YGRLRFVTKYEHVD--HLLDARHNGKTRFRFSINS--RYVINHFEPG--TSSFDGRLAAARK-VAGAGYKLG 257 (368)
T ss_dssp HHCS----SEEEEEEESCCCCG--GGTTCCCTTCEEEEEEECC--HHHHHHHCTT--SCCHHHHHHHHHH-HHHTTCEEE
T ss_pred HhCC----CceEEEEeCCcCHH--HHHhcCcCCceEEEEEEcC--HHHHHHcCCC--CCCHHHHHHHHHH-HHHCCCeEE
Confidence 7763 14799999987643 22221 124566788864 6677776543 3578888999955 567888887
Q ss_pred EEE-EEeCCCCChHHHHHHHHHHHhh
Q 022752 184 IEY-IMLDGVNDEEQHAHQLGKLLET 208 (292)
Q Consensus 184 i~~-vl~~g~nd~~~~l~~l~~~l~~ 208 (292)
+.+ .++|+ ++.+++..++.+.+.+
T Consensus 258 v~iaPIiP~-~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 258 FVVAPIYRH-EGWERGYFELFQELAR 282 (368)
T ss_dssp EEEEEECCC-TTHHHHHHHHHHHHHH
T ss_pred EEEeCcCCC-CCCHHHHHHHHHHHHH
Confidence 665 67887 4555566666664443
No 14
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=94.73 E-value=2 Score=37.55 Aligned_cols=179 Identities=8% Similarity=-0.025 Sum_probs=100.8
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCC-----ccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhh
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMG-----EPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHS 133 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~G-----EPll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~ 133 (292)
..++.++.++.+....+ .+++.|-+.+ + +|.+. + ..++++.+++. + ..+...+-. ...+++..+
T Consensus 22 ~~~~~e~k~~i~~~L~~-~Gv~~IE~g~-~~~~~~~p~~~-d-~~~~~~~~~~~~~-----~~~~~l~~~-~~~i~~a~~ 91 (298)
T 2cw6_A 22 NIVSTPVKIKLIDMLSE-AGLSVIETTS-FVSPKWVPQMG-D-HTEVLKGIQKFPG-----INYPVLTPN-LKGFEAAVA 91 (298)
T ss_dssp SCCCHHHHHHHHHHHHH-TTCSEECCEE-CCCTTTCGGGT-T-HHHHHHHSCCCTT-----CBCCEECCS-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-cCcCEEEECC-CcCcccccccC-C-HHHHHHHHhhCCC-----CEEEEEcCC-HHhHHHHHH
Confidence 45778887766666544 4777777765 5 68774 4 35677777764 3 233332211 223455555
Q ss_pred hCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCC----CCChHHHHHHHHHHHhhC
Q 022752 134 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG----VNDEEQHAHQLGKLLETF 209 (292)
Q Consensus 134 ~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g----~nd~~~~l~~l~~~l~~~ 209 (292)
.+ ...+.|.+...+.+.+..+.. .....++.+.+.+ +++++.|..+.+.+...=+ -..+.+.+.++++.+.+.
T Consensus 92 ag-~~~v~i~~~~sd~~~~~~~~~-~~~e~l~~~~~~i-~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (298)
T 2cw6_A 92 AG-AKEVVIFGAASELFTKKNINC-SIEESFQRFDAIL-KAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSM 168 (298)
T ss_dssp TT-CSEEEEEEESCHHHHHHHHSC-CHHHHHHHHHHHH-HHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHT
T ss_pred CC-CCEEEEEecCCHHHHHHHhCC-CHHHHHHHHHHHH-HHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHc
Confidence 54 233556554444444444422 2335566777777 6677888888776543211 012567888999999999
Q ss_pred CcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcC-C--eEEEeecccccc
Q 022752 210 QVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY-N--IRTTVRKQMGQD 259 (292)
Q Consensus 210 ~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~-g--~~v~ir~~~g~~ 259 (292)
|+. +.+-.-. . ..+++++.++.+.+++.. + +.+...+..|..
T Consensus 169 Ga~~i~l~DT~------G--~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla 214 (298)
T 2cw6_A 169 GCYEISLGDTI------G--VGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQA 214 (298)
T ss_dssp TCSEEEEEETT------S--CCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCH
T ss_pred CCCEEEecCCC------C--CcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchH
Confidence 986 6554222 1 134566666655555333 2 334455555543
No 15
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=87.25 E-value=14 Score=31.92 Aligned_cols=168 Identities=13% Similarity=0.028 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecC--Cc--cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhh
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGM--GE--PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 134 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~--GE--Pll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~ 134 (292)
..++.++.++.+....+ .++..|-+.+. ++ |.+. ...++++.+++. + ..+.+.+ .....+.+..+.
T Consensus 21 ~~~~~e~k~~i~~~L~~-~Gv~~IE~g~~~~~~~~p~~~--~~~e~~~~i~~~~~-----~~v~~l~-~n~~~i~~a~~~ 91 (295)
T 1ydn_A 21 RFVPTADKIALINRLSD-CGYARIEATSFVSPKWVPQLA--DSREVMAGIRRADG-----VRYSVLV-PNMKGYEAAAAA 91 (295)
T ss_dssp SCCCHHHHHHHHHHHTT-TTCSEEEEEECSCTTTCGGGT--THHHHHHHSCCCSS-----SEEEEEC-SSHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHH-cCcCEEEEccCcCcccccccc--CHHHHHHHHHhCCC-----CEEEEEe-CCHHHHHHHHHC
Confidence 34788887777776654 46766665442 44 5453 345888888765 3 4554333 112335555555
Q ss_pred CCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCC----CCChHHHHHHHHHHHhhCC
Q 022752 135 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG----VNDEEQHAHQLGKLLETFQ 210 (292)
Q Consensus 135 ~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g----~nd~~~~l~~l~~~l~~~~ 210 (292)
+ ...+.|++.+.+-.....+. ......++.+.+.+ +++++.|..+...+...-+ ...+.+++.++++.+.+.|
T Consensus 92 G-~~~V~i~~~~S~~h~~~~~~-~~~~e~~~~~~~~v-~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G 168 (295)
T 1ydn_A 92 H-ADEIAVFISASEGFSKANIN-CTIAESIERLSPVI-GAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLG 168 (295)
T ss_dssp T-CSEEEEEEESCHHHHHHHTS-SCHHHHHHHHHHHH-HHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHT
T ss_pred C-CCEEEEEEecCHHHHHHHcC-CCHHHHHHHHHHHH-HHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcC
Confidence 4 23455665443222233222 12233455556666 6677888887754433211 1235678888888888888
Q ss_pred cE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCC
Q 022752 211 VV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 247 (292)
Q Consensus 211 ~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g 247 (292)
+. +.+-. ..| . .+++++.++.+.+++...
T Consensus 169 ~d~i~l~D--t~G----~--~~P~~~~~lv~~l~~~~~ 198 (295)
T 1ydn_A 169 CHEVSLGD--TIG----R--GTPDTVAAMLDAVLAIAP 198 (295)
T ss_dssp CSEEEEEE--TTS----C--CCHHHHHHHHHHHHTTSC
T ss_pred CCEEEecC--CCC----C--cCHHHHHHHHHHHHHhCC
Confidence 86 65542 232 1 345565555555553443
No 16
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=85.84 E-value=6.5 Score=35.21 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCC-chhh--------------------HHHHhhhCCCceEEEEecCCChHHHhh
Q 022752 96 AALVEAVRIMTGLPFQVSPKRITVSTVG-IVHA--------------------INKFHSDLPGLNLAVSLHAPVQDVRCQ 154 (292)
Q Consensus 96 ~~i~ell~~~~~~g~~~~~~~i~l~TNG-~~~~--------------------~~~l~~~~~~~~l~iSld~~~~~~~~~ 154 (292)
+.+.++++.+++.+ ..+.|-.|. +++. ..++++.....++.+|+++.+.
T Consensus 120 ~~~~~vv~~ak~~~-----~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~iviS~K~S~v----- 189 (366)
T 3noy_A 120 EIVREIVEEAKRRG-----VAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTNYKVSIKGSDV----- 189 (366)
T ss_dssp HHHHHHHHHHHHHT-----CEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECSSH-----
T ss_pred hHHHHHHHHHHHcC-----CCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCeEEEeeecCCh-----
Confidence 45678888888887 567776663 3311 1122333333467788876532
Q ss_pred hcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCC-C-hHHHHHHHHHHHh-hCCcEEEEEecCCCCCCCCcCCCc
Q 022752 155 IMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN-D-EEQHAHQLGKLLE-TFQVVVNLIPFNPIGSVSQFRTSS 231 (292)
Q Consensus 155 i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~n-d-~~~~l~~l~~~l~-~~~~~v~l~p~~p~~~~~~~~~~~ 231 (292)
...+++-+.+++....++++-++=. |.. + ....-..+.-+|. .+|--+.+ .....+
T Consensus 190 ----------~~~i~ayr~la~~~dyPLHlGvTEA-G~~~~G~ikSsigiG~LL~dGIGDTIRV----------SLt~~p 248 (366)
T 3noy_A 190 ----------LQNVRANLIFAERTDVPLHIGITEA-GMGTKGIIKSSVGIGILLYMGIGDTVRV----------SLTDDP 248 (366)
T ss_dssp ----------HHHHHHHHHHHHHCCCCEEECCSSC-CSHHHHHHHHHHHHHHHHHTTCCSEECC----------CCSSCH
T ss_pred ----------HHHHHHHHHHHhccCCCEEEccCCC-CCCcceeeehHHHHHHHHHhcccceEEE----------eCCCCc
Confidence 2334444455555555554432211 100 0 1122334444443 34433322 111235
Q ss_pred HHHHHHHHHHHHhcCCeEEEeeccccccc--ccccccccccC
Q 022752 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDI--SGACGQLVVNL 271 (292)
Q Consensus 232 ~e~l~~~~~~l~~~~g~~v~ir~~~g~~~--~~~c~~~~~~~ 271 (292)
.+++...+++|+ ..|+ |.. |.++ ||+|||..+..
T Consensus 249 ~~Ev~va~~ILq-slgl----R~~-g~~~ISCPtCGRt~~dl 284 (366)
T 3noy_A 249 VVEVETAYEILK-SLGL----RRR-GVEIVACPTCGRIEVDL 284 (366)
T ss_dssp HHHHHHHHHHHH-HTTS----CCS-SCEEEECCCCTTCCSCH
T ss_pred HHHHHHHHHHHH-hcCC----CcC-CCEEEECCCCCCccccH
Confidence 778888888888 6664 332 4454 89999987754
No 17
>3p14_A L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus halodurans} SCOP: c.1.15.2 PDB: 3uu0_A 3uva_A 3uxi_A
Probab=80.48 E-value=9.1 Score=35.04 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=82.6
Q ss_pred CcCCCCHHHHHHHHHHhhcc-CCcceEEEe------cCCccccC----HHHHHHHHHHHhCCCCCCCCCeEEEEcCCchh
Q 022752 58 FKSNLSSGEIVEQLVHASRL-SNIRNVVFM------GMGEPLNN----YAALVEAVRIMTGLPFQVSPKRITVSTVGIVH 126 (292)
Q Consensus 58 ~~~~~~~eei~~~i~~~~~~-~~~~~I~fs------G~GEPll~----~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~ 126 (292)
.+...+++|..+.+..+... .+...|.+. | ||+.-. ++.+.++.+.+++.| +.+.+++|.+..
T Consensus 70 pG~ar~~~E~~~D~~~~~~l~~~~~~v~LH~~y~~~~-~~~v~~d~~~p~~f~~~~~~a~e~G-----L~l~~n~n~Fsh 143 (424)
T 3p14_A 70 PGKATTPEELRMDLEKALSLIPGKHRVNLHAIYAETD-GKVVERDQLEPRHFEKWVRWAKRHG-----LGLDFNPTLFSH 143 (424)
T ss_dssp SCCCCSHHHHHHHHHHHHTTSSSCCEEEEEGGGCCCT-TCCCCGGGCCGGGGHHHHHHHHHHT-----CEEEEECCCSSS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCcceecchhhhccC-CCcCCccccChhhHHHHHHHHHHcC-----CceeeccCCCCC
Confidence 35678899999999887653 345678887 6 665543 456788889999888 566688886531
Q ss_pred hHHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHh----hCCeEEEEEEEeCCCC----ChHHH
Q 022752 127 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN----SQQKIFIEYIMLDGVN----DEEQH 198 (292)
Q Consensus 127 ~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~----~~~~v~i~~vl~~g~n----d~~~~ 198 (292)
. ++ ..+ +++-++++++|+.. .+.+++.+ ++.++ .|.+..+++-+-.|.+ |-...
T Consensus 144 p--~y-k~G------~alTnPD~~VR~~A--------I~h~k~~i-dia~~~G~~LGs~~~~~lW~~DG~kdyp~D~~~~ 205 (424)
T 3p14_A 144 E--KA-KDG------LTLAHPDQAIRQFW--------IDHCIASR-KIGEYFGKELETPCLTNIWIPDGYKDTPSDRLTP 205 (424)
T ss_dssp G--GG-TTS------CSTTCSSHHHHHHH--------HHHHHHHH-HHHHHHHHHHSSCEEEEECCCCEESSCCSCSHHH
T ss_pred h--hh-cCC------ccCCCCCHHHHHHH--------HHHHHHHH-HHHHHHHHhcCCCeeEEEeCCCCCcCCCCCHHHH
Confidence 1 11 111 35667889998754 45556666 45554 5676566555544555 66666
Q ss_pred HHHHHHHHhh
Q 022752 199 AHQLGKLLET 208 (292)
Q Consensus 199 l~~l~~~l~~ 208 (292)
.+.+.+.|..
T Consensus 206 ~~rl~esL~e 215 (424)
T 3p14_A 206 RKRLKESLDQ 215 (424)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6777766665
No 18
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=74.60 E-value=20 Score=25.43 Aligned_cols=75 Identities=13% Similarity=0.316 Sum_probs=51.6
Q ss_pred ccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHHHHHHHH
Q 022752 162 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 241 (292)
Q Consensus 162 ~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~ 241 (292)
.+-+...+++.++.++++..+. ++++ |+.+-.++.+++++.+|..+-++-|. -++.++++|...
T Consensus 33 rspqelkdsieelvkkynativ--vvvv----ddkewaekairfvkslgaqvliiiyd----------qdqnrleefsre 96 (134)
T 2l69_A 33 RSPQELKDSIEELVKKYNATIV--VVVV----DDKEWAEKAIRFVKSLGAQVLIIIYD----------QDQNRLEEFSRE 96 (134)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEE--EEEC----SSHHHHHHHHHHHHHHCCCCEEEEEC----------SCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhCCeEE--EEEE----ccHHHHHHHHHHHHhcCCeEEEEEEe----------CchhHHHHHHHH
Confidence 3566777888788777765443 2333 45666788999999999876555453 256788888888
Q ss_pred HHhcCCeEEEee
Q 022752 242 LRGSYNIRTTVR 253 (292)
Q Consensus 242 l~~~~g~~v~ir 253 (292)
++ .-|+++..-
T Consensus 97 vr-rrgfevrtv 107 (134)
T 2l69_A 97 VR-RRGFEVRTV 107 (134)
T ss_dssp HH-HTTCCEEEE
T ss_pred HH-hcCceEEEe
Confidence 88 568876443
No 19
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=71.20 E-value=21 Score=30.86 Aligned_cols=159 Identities=12% Similarity=0.039 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC---CccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh-HHHHh--hh
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM---GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA-INKFH--SD 134 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~---GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~-~~~l~--~~ 134 (292)
.+|++|+.+...+..+. |...|.+.-. |.|++.++.+.+++..+++.. +.+.+.++|.|.... ..++. ..
T Consensus 30 PvTpeEia~~A~~~~~A-GAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~---pd~ii~~TTgg~~~~~eeR~~~~~~ 105 (284)
T 3chv_A 30 PITVSEQVESTQEAFEA-GAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHC---PGMIVQFSTGGRSGAGQARGGMLPL 105 (284)
T ss_dssp CCSHHHHHHHHHHHHHH-TCCEEEECEECTTSCEECCHHHHHHHHHHHHHHS---TTCEEEECCCTTTCCGGGGGTTGGG
T ss_pred CCCHHHHHHHHHHHHHc-CCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhC---CCeEEEeCCCCCCCCHHHHHHhhhc
Confidence 47899999998876542 4444444322 789999999999999999752 137899999664211 11211 11
Q ss_pred CCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhC----C
Q 022752 135 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF----Q 210 (292)
Q Consensus 135 ~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~----~ 210 (292)
.+ ++ .|++..+-.....+ ...+.+.+.+.+ +.+.+.|++..+. +. +..++..+..++++- .
T Consensus 106 ~P--e~-aSl~~Gs~Nf~~~v----~~n~~~~~~~~~-~~~~e~Gv~pE~e--~f-----d~g~l~~~~~l~~~Gll~~p 170 (284)
T 3chv_A 106 KP--DM-ASLSVGSNNFPSRV----YENPPDLVDWLA-AQMRSYRVTPEIE--AF-----DLSHILRAIDMHGRGLLYGK 170 (284)
T ss_dssp CC--SE-EEECCSCEECSSSE----ECCCHHHHHHHH-HHHHHHTCEEEEE--ES-----SHHHHHHHHHHHHTTCSCSS
T ss_pred CC--CE-EEecCcccccCCcc----ccCCHHHHHHHH-HHHHHcCCEEEEE--EE-----CHHHHHHHHHHHHcCCCCCC
Confidence 22 22 24443221110111 113455555555 4455677766654 32 345677766666542 1
Q ss_pred cEEEEEecCCCCCCCCcCCCcHHHHHHHHHHHH
Q 022752 211 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 211 ~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~ 243 (292)
..++++--.+. . .+++.+.+..+.+.+.
T Consensus 171 ~~~~~vlGv~~----g-~~~~~~~L~~~~~~~p 198 (284)
T 3chv_A 171 LYVQFVMGVKN----A-MPADREVFDFYVRMMR 198 (284)
T ss_dssp CEEEEEECCTT----S-CCCCHHHHHHHHHHHH
T ss_pred ceEEEEEecCC----C-CCCCHHHHHHHHHhcc
Confidence 23444321221 1 2456677666665553
No 20
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=70.78 E-value=51 Score=28.38 Aligned_cols=159 Identities=13% Similarity=0.074 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEec---CCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchh-h-HHHH--hh
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMG---MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH-A-INKF--HS 133 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG---~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~-~-~~~l--~~ 133 (292)
.+|++|+.+...+..+. |...|.+.- .|.|++.++.+.+++..+++.. +.+.+.++|.|... . ..++ .+
T Consensus 30 PvTpeEia~~A~~a~~A-GAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~---pd~ii~~TTg~~~~~~~eeR~~~~~ 105 (282)
T 2y7e_A 30 PITPEEQAKEAKACFEA-GARVIHLHIREDDGRPSQRLDRFQEAISAIREVV---PEIIIQISTGGAVGESFDKRLAPLA 105 (282)
T ss_dssp CCSHHHHHHHHHHHHHH-TEEEEEECEECTTSCEECCHHHHHHHHHHHHHHC---TTSEEEECSSCSTTCCHHHHHGGGG
T ss_pred CCCHHHHHHHHHHHHHc-CCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHC---CCeEEEeCCCCCCCCCHHHHHHHhh
Confidence 47899999998876542 333333332 1789999999999999999752 13789999966422 1 1222 22
Q ss_pred hCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCc--
Q 022752 134 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-- 211 (292)
Q Consensus 134 ~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~-- 211 (292)
..+ ....+++-+.|-. ..+ ...+.+.+.+.+ +.+.+.|++..+. +. +..++..+..++++--.
T Consensus 106 ~~P-e~asl~~gs~Nf~--~~v----~~n~~~~~~~~~-~~~~e~Gv~pE~e--~f-----d~g~l~~~~~l~~~Gl~p~ 170 (282)
T 2y7e_A 106 LKP-EMATLNAGTLNFG--DDI----FINHPADIIRLA-EAFKQYNVVPEVE--VY-----ESGMVDAVARLIKKGIITQ 170 (282)
T ss_dssp GCC-SEEEEECCCEEET--TEE----ECCCHHHHHHHH-HHHHHTTCEEEEE--EC-----SHHHHHHHHHHHHTTSCCC
T ss_pred cCC-CEEEecccccccc--ccc----ccCCHHHHHHHH-HHHHHcCCeEEEE--EE-----CHHHHHHHHHHHHcCCCCC
Confidence 222 2222333222211 111 123555565666 4556677766654 32 35677777766665212
Q ss_pred ---EEEEEecCCCCCCCCcCCCcHHHHHHHHHHHH
Q 022752 212 ---VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243 (292)
Q Consensus 212 ---~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~ 243 (292)
.++++--.+. . .+.+.+.+..+.+.+.
T Consensus 171 ~p~~~~~VlGv~~----g-~~~~~~~L~~~~~~lp 200 (282)
T 2y7e_A 171 NPLHIQFVLGVPG----G-MSGKPKNLMYMMEHLK 200 (282)
T ss_dssp SSCEEEEEECCTT----S-CCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEEecCC----C-CCCCHHHHHHHHHhcc
Confidence 2443321221 1 2466777776666554
No 21
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=68.49 E-value=30 Score=29.69 Aligned_cols=159 Identities=15% Similarity=0.033 Sum_probs=83.3
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecC---CccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHH-H--Hhh
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGM---GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAIN-K--FHS 133 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~---GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~-~--l~~ 133 (292)
-.+|++|+++...+..+. |...|.+.-. |.|++.++...+++..+++.. +.+.+.++|-|...... + +.+
T Consensus 25 lPvTpeEia~~A~~~~~A-GAaivHlHvRd~~G~~s~d~~~~~e~~~~IR~~~---pd~ii~~Ttg~~~~~~e~R~~~~~ 100 (275)
T 3no5_A 25 VPITVSEQVESTQAAFEA-GATLVHLHVRNDDETPTSNPDRFALVLEGIRKHA---PGMITQVSTGGRSGAGNERGAMLS 100 (275)
T ss_dssp SCCSHHHHHHHHHHHHHH-TCCEEEECEECTTSCEECCHHHHHHHHHHHHHHS---TTCEEEECCCCCTTCCGGGGTTGG
T ss_pred CCCCHHHHHHHHHHHHHc-cCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHhC---CCeEEEeCCCCCCCCHHHHhhHhh
Confidence 358899999998876542 4444444321 889999988999999998751 23788888877432211 1 111
Q ss_pred hCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhC----
Q 022752 134 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---- 209 (292)
Q Consensus 134 ~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~---- 209 (292)
..+ ++ .|++..+-.....+ ...+.+.+.+.+ +.+.+.|++..+. +. +..++..+..++++-
T Consensus 101 ~~P--e~-aSl~~gs~Nf~~~v----~~N~~~~~~~~~-~~~~e~Gi~pE~e--~f-----d~g~l~~~~~l~~~Gl~~~ 165 (275)
T 3no5_A 101 LRP--DM-ASLATGSVNFPTRV----YDNPPELVDWLA-AEMKTYGIKPEVE--AF-----DLSMIFQAAAMQAAGAIVG 165 (275)
T ss_dssp GCC--SE-EEEECSCEECSSSE----ECCCHHHHHHHH-HHHHHTTCEEEEE--ES-----STHHHHHHHHHHHHTSSCS
T ss_pred cCC--CE-EEecCccccccccc----ccCCHHHHHHHH-HHHHHcCCeeEEE--EE-----cHHHHHHHHHHHHCCCCCC
Confidence 111 22 23332211111111 112455555555 4455667766654 32 234566666666542
Q ss_pred CcEEEEEecCCCCCCCCcCCCcHHHHHHHHHHH
Q 022752 210 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 242 (292)
Q Consensus 210 ~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l 242 (292)
...++++-=.+. . .+++.+.+..+.+.+
T Consensus 166 p~~~~~vlGv~~----g-~~~~~~~l~~~~~~l 193 (275)
T 3no5_A 166 PLHIQFVMGIKN----A-MPVDREVLEFYVQTL 193 (275)
T ss_dssp SCEEEEEECCTT----S-CCCCHHHHHHHHHHH
T ss_pred CeeEEEEeCCCC----C-CCCCHHHHHHHHHHH
Confidence 122443311111 1 235666676666666
No 22
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=66.51 E-value=67 Score=28.10 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHhhcc-CCcceEEEec--CCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 022752 60 SNLSSGEIVEQLVHASRL-SNIRNVVFMG--MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 124 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~-~~~~~I~fsG--~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~ 124 (292)
-.+|++|+++...+..+. ..+-++..=. .|.|++.++...+++..+++.. .+.+.++|-|.
T Consensus 27 lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~~----d~iI~~TTgg~ 90 (314)
T 3lot_A 27 LPVTPDQIVEEAVKAAEAGAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQS----DVVINVTTGGG 90 (314)
T ss_dssp SCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHHHC----CCEEEECSSTT
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhcC----CeEEEeCCCCc
Confidence 358899999998876542 1234444444 3889999888899999998751 27899988874
No 23
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=62.72 E-value=86 Score=28.05 Aligned_cols=177 Identities=12% Similarity=0.119 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCce
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~ 139 (292)
..++.++.++.+....+ .+++.|-+.+ |... +...+.++.+++.++. ..+..-..+....+.+..+.+. ..
T Consensus 20 ~~~~~~~k~~ia~~L~~-~Gv~~IE~g~---p~~~-~~~~~~~~~i~~~~~~---~~v~~~~r~~~~di~~a~~~g~-~~ 90 (382)
T 2ztj_A 20 ANFSTQDKVEIAKALDE-FGIEYIEVTT---PVAS-PQSRKDAEVLASLGLK---AKVVTHIQCRLDAAKVAVETGV-QG 90 (382)
T ss_dssp CCCCHHHHHHHHHHHHH-HTCSEEEECC---TTSC-HHHHHHHHHHHTSCCS---SEEEEEEESCHHHHHHHHHTTC-SE
T ss_pred CCcCHHHHHHHHHHHHH-cCcCEEEEcC---CcCC-HHHHHHHHHHHhcCCC---cEEEEEcccChhhHHHHHHcCC-CE
Confidence 46788887776666544 3777777743 7676 5567888888887632 3333222233333455555442 22
Q ss_pred EEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhC--CeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEE
Q 022752 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLI 216 (292)
Q Consensus 140 l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~--~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~ 216 (292)
+.+.+. .++.+...+ +.+....++.+.+.+ +++++.| ..+.+.. ......+.+.+.++++.+.+. +. +.+-
T Consensus 91 v~i~~~-~s~~~~~~~-~~s~~e~l~~~~~~v-~~ak~~g~~~~v~~~~--ed~~~~~~~~~~~~~~~~~~~-a~~i~l~ 164 (382)
T 2ztj_A 91 IDLLFG-TSKYLRAPH-GRDIPRIIEEAKEVI-AYIREAAPHVEVRFSA--EDTFRSEEQDLLAVYEAVAPY-VDRVGLA 164 (382)
T ss_dssp EEEEEC-C---------CCCHHHHHHHHHHHH-HHHHHHCTTSEEEEEE--TTTTTSCHHHHHHHHHHHGGG-CSEEEEE
T ss_pred EEEEec-cCHHHHHHh-CCCHHHHHHHHHHHH-HHHHHcCCCEEEEEEE--EeCCCCCHHHHHHHHHHHHHh-cCEEEec
Confidence 334332 233222222 111223345566666 5677778 6555543 333344567788888888887 65 5553
Q ss_pred ecCCCCCCCCcCCCcHHHHHHHHHHHHhc--CCeE--EEeecccccc
Q 022752 217 PFNPIGSVSQFRTSSDDKVSSFQKILRGS--YNIR--TTVRKQMGQD 259 (292)
Q Consensus 217 p~~p~~~~~~~~~~~~e~l~~~~~~l~~~--~g~~--v~ir~~~g~~ 259 (292)
.-... ..+.++..+.+.+++. .+++ +...+..|..
T Consensus 165 DT~G~--------~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlA 203 (382)
T 2ztj_A 165 DTVGV--------ATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCA 203 (382)
T ss_dssp ETTSC--------CCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCH
T ss_pred CCCCC--------CCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHH
Confidence 32221 2344555544444423 2333 3444555544
No 24
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=59.53 E-value=1e+02 Score=27.92 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEeeccccccc--cccccccccc
Q 022752 232 DDKVSSFQKILRGSYNIRTTVRKQMGQDI--SGACGQLVVN 270 (292)
Q Consensus 232 ~e~l~~~~~~l~~~~g~~v~ir~~~g~~~--~~~c~~~~~~ 270 (292)
.+++.-.+++|+ ..|+ |.. |.++ |++|||..+.
T Consensus 272 ~~EV~va~~ILq-slgl----R~~-~~~iiSCPtCGRt~~d 306 (406)
T 4g9p_A 272 TKEVEVAQEILQ-ALGL----RAF-APEVTSCPGCGRTTST 306 (406)
T ss_dssp THHHHHHHHHHH-HTTS----CCC-SCEEEECCCCTTSCHH
T ss_pred HHHHHHHHHHHH-HhCC----ccc-CCCcccCCCCCcCcch
Confidence 468888899999 6774 332 4444 8999997654
No 25
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=58.10 E-value=98 Score=27.24 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTG 107 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~ 107 (292)
.++.+.+.+.+..... .++++|.+.|. || ++|..+.-.++++.+.+
T Consensus 48 ~ID~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve 95 (343)
T 2v9d_A 48 QLDKPGTAALIDDLIK-AGVDGLFFLGSGGEFSQLGAEERKAIARFAID 95 (343)
T ss_dssp SBCHHHHHHHHHHHHH-TTCSCEEESSTTTTGGGSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEeCccccChhhCCHHHHHHHHHHHHH
Confidence 4565555555554443 47889988775 88 77886666666666654
No 26
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=57.93 E-value=65 Score=28.10 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHhhcc-CCcceEEEec--CCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 022752 60 SNLSSGEIVEQLVHASRL-SNIRNVVFMG--MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 124 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~-~~~~~I~fsG--~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~ 124 (292)
-.+|++|+++...+..+. -.+-++..=. .|.|++.++.+.+++..+++.- ...+.++|-|.
T Consensus 27 lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~----d~iI~~TTgg~ 90 (311)
T 3e02_A 27 LPITPEEIVKEGVAAAEAGAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERT----DAILNITTGGG 90 (311)
T ss_dssp SCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHC----CCEEEECSSCS
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhC----CcEEEECCCCC
Confidence 358899999998876542 1233444443 3889999888899999998751 25677788764
No 27
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=55.59 E-value=1.1e+02 Score=26.85 Aligned_cols=58 Identities=10% Similarity=0.093 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHhhccCCcceEE--Eec--CCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVV--FMG--MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~--fsG--~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
.+|++|+++...+..+. |...|. .=. .|.|++.++...+++..+++.. +.+.+.++|.
T Consensus 44 PvTpeEIa~~A~~a~~A-GAaivHlHvRd~~~G~ps~d~~~y~e~~~~IR~~~---~d~ii~~TTg 105 (316)
T 3c6c_A 44 PITPAQIADACVEAAKA-GASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRSSG---TDIVLNLTCG 105 (316)
T ss_dssp CCSHHHHHHHHHHHHHH-TCSEEEECEECTTTCCEECCHHHHHHHHHHHHTTT---CCCEEEEECC
T ss_pred CCCHHHHHHHHHHHHHc-CCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHC---CCeEEEeCCC
Confidence 47899999998876542 333333 333 2789999999999999999872 1388999996
No 28
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=55.20 E-value=16 Score=27.18 Aligned_cols=21 Identities=10% Similarity=0.287 Sum_probs=14.8
Q ss_pred CceEEEEEcCCCCCcCCcCcCC
Q 022752 32 PRSTLCISSQVGCKMGCNFCAT 53 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~ 53 (292)
..++||.-.+..||+ |.||..
T Consensus 20 ~~VvvF~Kgt~~~P~-C~fc~~ 40 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQ-CGFSNA 40 (118)
T ss_dssp SSEEEEESBCSSSBS-SHHHHH
T ss_pred CCEEEEEcCCCCCCC-CHHHHH
Confidence 457888855556665 899976
No 29
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=54.12 E-value=57 Score=27.55 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccccCHH-HHHHHHHHHhCCCCCCCCCeEEEEcCCchh
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYA-ALVEAVRIMTGLPFQVSPKRITVSTVGIVH 126 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~-~i~ell~~~~~~g~~~~~~~i~l~TNG~~~ 126 (292)
+++..+-+.+.-+.. .++.+-|.+ |-..+.++ .+.+.++.+++.| +.+.|-|++.
T Consensus 23 lg~~~~~d~Le~~g~--yID~lKfg~-Gt~~l~~~~~l~eki~l~~~~g-------V~v~~GGTl~ 78 (251)
T 1qwg_A 23 LPPKFVEDYLKVCGD--YIDFVKFGW-GTSAVIDRDVVKEKINYYKDWG-------IKVYPGGTLF 78 (251)
T ss_dssp CCHHHHHHHHHHHGG--GCSEEEECT-TGGGGSCHHHHHHHHHHHHTTT-------CEEEECHHHH
T ss_pred CCHHHHHHHHHHhhh--hcceEEecC-ceeeecCHHHHHHHHHHHHHcC-------CeEECCcHHH
Confidence 555554444433444 489999999 99888633 4899999999987 7788888654
No 30
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=51.43 E-value=48 Score=29.51 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=51.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEEe
Q 022752 184 IEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252 (292)
Q Consensus 184 i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~i 252 (292)
+-++.=|+.+++.+...++++.+++.+.. +.+..|.|......|+.+..+.+..+++..+ +.|+++..
T Consensus 107 ~~vIAgpcs~es~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~-e~Gl~~~t 175 (350)
T 1vr6_A 107 FTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAAD-KYGMYVVT 175 (350)
T ss_dssp EEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHH-HHTCEEEE
T ss_pred eEEEEeCCCcCCHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHH-HcCCcEEE
Confidence 33445567788999999999999999877 6677777754333566667788888888888 78988643
No 31
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=50.10 E-value=25 Score=25.62 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhccCCcceEEEe-cCCccccCHHHHHHHHHHHhCCC
Q 022752 65 GEIVEQLVHASRLSNIRNVVFM-GMGEPLNNYAALVEAVRIMTGLP 109 (292)
Q Consensus 65 eei~~~i~~~~~~~~~~~I~fs-G~GEPll~~~~i~ell~~~~~~g 109 (292)
++..+.+.+.... +-+.+.++ + |+|++. ....++++.+++.|
T Consensus 66 ~~~~~~i~~~~~~-G~~V~~l~d~-GdP~i~-~~~~~l~~~~~~~g 108 (117)
T 3hh1_A 66 ERAVRQVIELLEE-GSDVALVTDA-GTPAIS-DPGYTMASAAHAAG 108 (117)
T ss_dssp HHHHHHHHHHHHT-TCCEEEEEET-TSCGGG-STTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHC-CCeEEEEecC-CcCeEe-ccHHHHHHHHHHCC
Confidence 4555655554331 44566677 7 999994 66788888888766
No 32
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=49.99 E-value=37 Score=28.90 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
...+++.+.+.+... .+-+.+.+++ |+|+++ ..-.++++.+++.| ..+.+...
T Consensus 76 ~~~~~i~~~l~~~~~-~G~~Vv~L~~-GDP~i~-g~g~~l~~~l~~~g-----i~veviPG 128 (280)
T 1s4d_A 76 PKQRDISLRLVELAR-AGNRVLRLKG-GDPFVF-GRGGEEALTLVEHQ-----VPFRIVPG 128 (280)
T ss_dssp CCHHHHHHHHHHHHH-TTCCEEEEES-BCTTSS-SSHHHHHHHHHTTT-----CCEEEECC
T ss_pred cCHHHHHHHHHHHHh-CCCeEEEEcC-CCCccc-cCHHHHHHHHHHCC-----CCEEEEcC
Confidence 456777777766443 2456788889 999996 66678888998877 55666644
No 33
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=49.12 E-value=1.3e+02 Score=25.78 Aligned_cols=130 Identities=9% Similarity=-0.008 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--HHHHhhhC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSDL 135 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~--~~~l~~~~ 135 (292)
.++.+.+.+.+..... .++++|.+.|. || ++|..+.-.++++.+.+. +=+.+ +...+.+|.+... ..+.++..
T Consensus 20 ~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~p-viaGvg~~~t~~ai~la~~A~~~ 97 (294)
T 3b4u_A 20 TVDIDAMIAHARRCLS-NGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSR-IVTGVLVDSIEDAADQSAEALNA 97 (294)
T ss_dssp SBCHHHHHHHHHHHHH-TTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGG-EEEEECCSSHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEeCCCccHHHHHHHHHHHHhc
Confidence 4565555555555444 47899988875 88 778877777888877754 10111 3334444444332 22333333
Q ss_pred CCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhh---CCeEEEE-EEEeCCCCChHHHHHHHH
Q 022752 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIE-YIMLDGVNDEEQHAHQLG 203 (292)
Q Consensus 136 ~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~---~~~v~i~-~vl~~g~nd~~~~l~~l~ 203 (292)
..+-.+.+ . +. |. + ..+-+.+.+..+..++.. +.++.+. +.-..|++-+.+.+.+|+
T Consensus 98 -Gadavlv~-~--P~-y~---~---~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La 158 (294)
T 3b4u_A 98 -GARNILLA-P--PS-YF---K---NVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLK 158 (294)
T ss_dssp -TCSEEEEC-C--CC-SS---C---SCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred -CCCEEEEc-C--Cc-CC---C---CCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHH
Confidence 24433222 1 11 11 0 024456666776666666 6666543 232335555665666665
No 34
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=49.06 E-value=19 Score=30.54 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
.++.+++.+.+.+.... +-+.+.+++ |+|+++ ....++++.+++.| ..+.+...
T Consensus 59 ~~~~~~~~~~i~~~~~~-G~~Va~L~~-GDP~iy-g~~~~l~~~l~~~g-----i~veviPG 112 (264)
T 3ndc_A 59 PMSLDAIIDTIAEAHAA-GQDVARLHS-GDLSIW-SAMGEQLRRLRALN-----IPYDVTPG 112 (264)
T ss_dssp TSCHHHHHHHHHHHHHH-TCCEEEEES-BCTTSS-CSHHHHHHHHHHTT-----CCEEEECC
T ss_pred CCCHHHHHHHHHHHHHC-CCeEEEEeC-CCCccc-cHHHHHHHHHHhCC-----CCEEEeCC
Confidence 35567778777764432 445677888 999996 65677888888776 45666643
No 35
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=47.03 E-value=55 Score=27.74 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=43.2
Q ss_pred eCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEE
Q 022752 189 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251 (292)
Q Consensus 189 ~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ 251 (292)
-|..+++.+...++++.+++.|.. +....|.|......++.+..+.+..+++.++ +.|+++.
T Consensus 29 gpc~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~-~~Gl~~~ 91 (262)
T 1zco_A 29 GPCSIESREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAAD-EYGLVTV 91 (262)
T ss_dssp ECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHH-HHTCEEE
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccCCCcccccCccHHHHHHHHHHHH-HcCCcEE
Confidence 345566788888899988888876 6666666643223445555777888888887 7888764
No 36
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=46.06 E-value=20 Score=30.18 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
.++.+++.+.+.+... .+-+.+.+++ |+|+++ ....++++.+++.| ..+.+...
T Consensus 60 ~~~~~~~~~~i~~~~~-~g~~V~~l~~-GDP~i~-~~~~~l~~~l~~~g-----i~veviPG 113 (253)
T 4e16_A 60 HMDLQEIIDVMREGIE-NNKSVVRLQT-GDFSIY-GSIREQVEDLNKLN-----IDYDCTPG 113 (253)
T ss_dssp GCCHHHHHHHHHHHHH-TTCCEEEEES-BCTTTT-CCHHHHHHHHHHHT-----CCEEEECC
T ss_pred CCCHHHHHHHHHHHHH-CCCcEEEEeC-CCCccc-cCHHHHHHHHHHCC-----CCEEEECC
Confidence 3556777777776443 2445677888 999996 65677888887766 45666644
No 37
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=44.74 E-value=6 Score=26.43 Aligned_cols=12 Identities=33% Similarity=1.173 Sum_probs=10.2
Q ss_pred CCCcC-CcCcCCC
Q 022752 43 GCKMG-CNFCATG 54 (292)
Q Consensus 43 gCNl~-C~yC~~~ 54 (292)
.|+++ |+||.+.
T Consensus 27 nCs~NiCPYC~nR 39 (77)
T 2l7x_A 27 NCSYNICPYCASR 39 (77)
T ss_dssp HHTTTCCTTTCCC
T ss_pred CCCcccChhhhcc
Confidence 38998 9999985
No 38
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=44.71 E-value=1.5e+02 Score=25.37 Aligned_cols=180 Identities=11% Similarity=0.108 Sum_probs=85.5
Q ss_pred cCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhC--C
Q 022752 59 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL--P 136 (292)
Q Consensus 59 ~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~--~ 136 (292)
...++.++-++.+....+ .|++.|-+.. |-..+... +.++.+.+.. +...+..-+.+....+....+.+ .
T Consensus 21 ~~~~~~~~K~~i~~~L~~-~Gv~~IE~g~---p~~~~~d~-e~v~~i~~~~---~~~~i~~l~~~~~~di~~a~~~~~~a 92 (293)
T 3ewb_X 21 GVNFDVKEKIQIALQLEK-LGIDVIEAGF---PISSPGDF-ECVKAIAKAI---KHCSVTGLARCVEGDIDRAEEALKDA 92 (293)
T ss_dssp --CCCHHHHHHHHHHHHH-HTCSEEEEEC---GGGCHHHH-HHHHHHHHHC---CSSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEEeC---CCCCccHH-HHHHHHHHhc---CCCEEEEEecCCHHHHHHHHHHHhhc
Confidence 346788887777766544 3777776544 66654332 2333333221 11344433322222233333321 1
Q ss_pred Cce-EEEEecCCChHH-HhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-E
Q 022752 137 GLN-LAVSLHAPVQDV-RCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-V 213 (292)
Q Consensus 137 ~~~-l~iSld~~~~~~-~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v 213 (292)
..+ +.+.+.+ ++.. ...+ +......++.+.+.+ +++++.+..+.+... ...-.+.+.+.++++.+.+.|+. +
T Consensus 93 g~~~v~i~~~~-Sd~~~~~nl-~~s~~e~l~~~~~~v-~~a~~~g~~v~~~~~--d~~~~~~~~~~~~~~~~~~~G~~~i 167 (293)
T 3ewb_X 93 VSPQIHIFLAT-SDVHMEYKL-KMSRAEVLASIKHHI-SYARQKFDVVQFSPE--DATRSDRAFLIEAVQTAIDAGATVI 167 (293)
T ss_dssp SSEEEEEEEEC-SHHHHHHTT-CCCHHHHHHHHHHHH-HHHHTTCSCEEEEEE--TGGGSCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEecC-cHHHHHHHh-CCCHHHHHHHHHHHH-HHHHhCCCEEEEEec--cCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 123 3344333 3333 2333 111223344444444 456677777665433 11123456788899989888886 5
Q ss_pred EEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCC------eEEEeecccccc
Q 022752 214 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN------IRTTVRKQMGQD 259 (292)
Q Consensus 214 ~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g------~~v~ir~~~g~~ 259 (292)
.+-.-. .+ ..+.++..+.+.+++..+ +.+......|.-
T Consensus 168 ~l~DT~------G~--~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla 211 (293)
T 3ewb_X 168 NIPDTV------GY--TNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMA 211 (293)
T ss_dssp EEECSS------SC--CCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCH
T ss_pred EecCCC------CC--CCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChH
Confidence 553221 11 345566555555553333 334455555544
No 39
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=44.31 E-value=1.6e+02 Score=25.60 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHhhcc-CCcceEEEec--CCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 022752 60 SNLSSGEIVEQLVHASRL-SNIRNVVFMG--MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 124 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~-~~~~~I~fsG--~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~ 124 (292)
-.+|++|+++...+..+. -.+-++..=. .|.|++.++.+.+++..+++.- ...+.++|-|.
T Consensus 27 lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~----d~iI~~TTgg~ 90 (311)
T 3e49_A 27 LPVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNT----DAVINLTTGGS 90 (311)
T ss_dssp SCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHC----CCEEEECSCSC
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhC----CcEEEECCCCC
Confidence 358899999998876542 1233444443 2889999888999999998751 25677888764
No 40
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=43.15 E-value=46 Score=28.50 Aligned_cols=64 Identities=8% Similarity=-0.004 Sum_probs=46.0
Q ss_pred EEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEE
Q 022752 187 IMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251 (292)
Q Consensus 187 vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ 251 (292)
+.=++.+++.+...++++.+++.+.. +.+..|.|......|+.+..+.+..+++..+ +.|+++.
T Consensus 42 IAgpc~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~-~~Gl~~~ 106 (276)
T 1vs1_A 42 IAGPCSVESWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGD-EAGLPVV 106 (276)
T ss_dssp EEECSBCCCHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHH-HHTCCEE
T ss_pred EEecCCCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCCCHHHHHHHHHHHH-HcCCcEE
Confidence 33456677888889999999988876 6666677653223466666788888888887 7888753
No 41
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=43.10 E-value=37 Score=29.13 Aligned_cols=54 Identities=22% Similarity=0.129 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchh
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH 126 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~ 126 (292)
+++..+-+.+.-+.. .++.+-|.+ |-..+.++ |.+.++.+++.| |.+.|-|++.
T Consensus 50 lg~~~~~DlLe~ag~--yID~lKfg~-GTs~l~~~-l~ekI~l~~~~g-------V~v~~GGTlf 103 (276)
T 1u83_A 50 YPLQFFKDAIAGASD--YIDFVKFGW-GTSLLTKD-LEEKISTLKEHD-------ITFFFGGTLF 103 (276)
T ss_dssp CCHHHHHHHHHHHGG--GCCEEEECT-TGGGGCTT-HHHHHHHHHHTT-------CEEEECHHHH
T ss_pred CCHHHHHHHHHHhhh--hcceEEecC-cchhhhHH-HHHHHHHHHHcC-------CeEeCCcHHH
Confidence 555554444443444 488999999 99999866 999999999987 7788888664
No 42
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=43.09 E-value=1.6e+02 Score=25.14 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTG 107 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~ 107 (292)
.++.+.+.+.+.......++++|.+.|. || ++|..+.-.++++.+.+
T Consensus 20 ~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~ 68 (293)
T 1f6k_A 20 TINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKD 68 (293)
T ss_dssp CBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHH
Confidence 4555555555554433137889888775 78 77887666666666654
No 43
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=42.58 E-value=28 Score=29.72 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG 123 (292)
++.+++.+.+.+.... +-+.+.+++ |+|+++ ....++++.+.+.| ..+.+...=
T Consensus 77 ~~~~~~~~~i~~~~~~-g~~Vv~L~~-GDP~i~-g~~~~l~~~l~~~g-----i~veviPGi 130 (285)
T 1cbf_A 77 MHLEEMVGTMLDRMRE-GKMVVRVHT-GDPAMY-GAIMEQMVLLKREG-----VDIEIVPGV 130 (285)
T ss_dssp CCHHHHHHHHHHHHTT-TCCEEEEES-BCTTTT-CCCHHHHHHHHHTT-----CEEEEECCC
T ss_pred CCHHHHHHHHHHHHHC-CCeEEEEeC-CCcccc-ccHHHHHHHHHHCC-----CcEEEECCc
Confidence 5567778877765432 456778888 999995 65677788887776 567776543
No 44
>1d8w_A L-rhamnose isomerase; beta-alpha-8-barrels, aldose-ketose isomerization, hydride shift; 1.60A {Escherichia coli} SCOP: c.1.15.2 PDB: 1de5_A* 1de6_A*
Probab=41.17 E-value=1.5e+02 Score=26.75 Aligned_cols=132 Identities=11% Similarity=0.085 Sum_probs=78.5
Q ss_pred CcCCCCHHHHHHHHHHhhcc-CCcceEEEecC----Cccc----cCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhH
Q 022752 58 FKSNLSSGEIVEQLVHASRL-SNIRNVVFMGM----GEPL----NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAI 128 (292)
Q Consensus 58 ~~~~~~~eei~~~i~~~~~~-~~~~~I~fsG~----GEPl----l~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~ 128 (292)
.+...+++|..+.+..+... .+...|++.-. |++- +-++.....++++++.| +.+-+++|-+-..
T Consensus 73 PG~aR~~~El~~D~~~v~~Lipg~~rvnLH~~y~~~~~~vDrd~~~~~hf~~w~~~Ak~~G-----lglDfNpt~Fshp- 146 (426)
T 1d8w_A 73 PGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQ-----LGLDFNPSCFSHP- 146 (426)
T ss_dssp SCCCCSHHHHHHHHHHHHHTSCSCEEEEEEGGGCCCSSCCCGGGCCGGGGHHHHHHHHHTT-----CEEEEECCCSSSG-
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCceEeeeeeccCCCcccccccchhhHHHHHHHHHHhC-----CCcCcCCCccCCc-
Confidence 34678899999988876553 33445554431 4422 22557789999999998 4566666643211
Q ss_pred HHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCC----ChHHHHHHHHH
Q 022752 129 NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN----DEEQHAHQLGK 204 (292)
Q Consensus 129 ~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~n----d~~~~l~~l~~ 204 (292)
. ....+||-.+++++|+.+.. .....++-...+.++.|.+..+++-+-.|.| |-..--+.+.+
T Consensus 147 -~-------~k~G~SLshpD~~IR~fwI~-----H~~~c~~I~~~~g~~lGs~~v~niWi~DG~kd~P~dr~~~r~Rl~e 213 (426)
T 1d8w_A 147 -L-------SADGFTLSHADDSIRQFWID-----HCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLA 213 (426)
T ss_dssp -G-------GTTSCSTTCSSHHHHHHHHH-----HHHHHHHHHHHHHHHHTSCEEEEECCCCEESSCCSCSHHHHHHHHH
T ss_pred -c-------ccCCCcccCCCHHHHHHHHH-----HHHHHHHHHHHHHHHhCCcccceeecCCCCCCCCcchHhHHHHHHH
Confidence 1 12225778889999886521 1122222222234467888888888777777 44444455555
Q ss_pred HHhh
Q 022752 205 LLET 208 (292)
Q Consensus 205 ~l~~ 208 (292)
.|.+
T Consensus 214 SLde 217 (426)
T 1d8w_A 214 ALDE 217 (426)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 45
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=41.10 E-value=1.7e+02 Score=25.16 Aligned_cols=108 Identities=8% Similarity=-0.030 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhCC--CCCCCCCeEEEEcCCchhhH---HHHhh
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL--PFQVSPKRITVSTVGIVHAI---NKFHS 133 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~~--g~~~~~~~i~l~TNG~~~~~---~~l~~ 133 (292)
.++.+.+.+.+..... .++++|.+.|. || |+|..+.-.++++.+.+. | ...+...+.....+. .+.++
T Consensus 29 ~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~g----rvpViaGvg~~t~~ai~la~~A~ 103 (316)
T 3e96_A 29 SIDWHHYKETVDRIVD-NGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHG----RALVVAGIGYATSTAIELGNAAK 103 (316)
T ss_dssp CBCHHHHHHHHHHHHT-TTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTT----SSEEEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-cCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCC----CCcEEEEeCcCHHHHHHHHHHHH
Confidence 4555555555554443 47888887764 78 777766666666666543 2 244555553332222 22233
Q ss_pred hCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEE
Q 022752 134 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 185 (292)
Q Consensus 134 ~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~ 185 (292)
.. ..+-.+.+ . |. |. +.+-+.+++..+..++..+.++.+.
T Consensus 104 ~~-Gadavlv~-~--P~-y~-------~~s~~~l~~~f~~va~a~~lPiilY 143 (316)
T 3e96_A 104 AA-GADAVMIH-M--PI-HP-------YVTAGGVYAYFRDIIEALDFPSLVY 143 (316)
T ss_dssp HH-TCSEEEEC-C--CC-CS-------CCCHHHHHHHHHHHHHHHTSCEEEE
T ss_pred hc-CCCEEEEc-C--CC-CC-------CCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 32 24433322 1 11 11 1245566666666666666666554
No 46
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=40.88 E-value=1.7e+02 Score=24.97 Aligned_cols=168 Identities=11% Similarity=0.054 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecC----CccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhC
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGM----GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL 135 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~----GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~ 135 (292)
..++.++.++.+....+ .+++.|-..+. .-|.+. + ..++++.+.+.. ...+.+.. .....+++..+.+
T Consensus 25 ~~~~~e~k~~i~~~L~~-~Gv~~IE~g~~~~~~~~~~~~-d-~~~~~~~~~~~~----~~~~~~l~-~~~~~i~~a~~aG 96 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSA-AGLDYIEVGSFVSPKWVPQMA-G-SAEVFAGIRQRP----GVTYAALA-PNLKGFEAALESG 96 (302)
T ss_dssp SCCCHHHHHHHHHHHHH-TTCSEEEEEECSCTTTCGGGT-T-HHHHHHHSCCCT----TSEEEEEC-CSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHH-cCcCEEEECCCcCcccccccc-C-HHHHHHHhhhcC----CCEEEEEe-CCHHHHHHHHhCC
Confidence 45777777766665543 36766665430 245553 2 346666666541 24554443 1222344555544
Q ss_pred CCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCC----CChHHHHHHHHHHHhhCCc
Q 022752 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV----NDEEQHAHQLGKLLETFQV 211 (292)
Q Consensus 136 ~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~----nd~~~~l~~l~~~l~~~~~ 211 (292)
...+.+...+.+-...+.+. ......++.+.+.+ +++++.|..+...+..+-+- ..+.+.+.++++.+.+.|+
T Consensus 97 -~~~v~i~~~~s~~~~~~~~~-~s~ee~l~~~~~~v-~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~ 173 (302)
T 2ftp_A 97 -VKEVAVFAAASEAFSQRNIN-CSIKDSLERFVPVL-EAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGC 173 (302)
T ss_dssp -CCEEEEEEESCHHHHHHHHS-SCHHHHHHHHHHHH-HHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTC
T ss_pred -cCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHH-HHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 23344444333333334432 12223445555555 56677888877655443111 1245677888888888888
Q ss_pred E-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcC
Q 022752 212 V-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 246 (292)
Q Consensus 212 ~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~ 246 (292)
. +.+-.- .| + ..++++.++.+.+++..
T Consensus 174 d~i~l~DT--~G----~--~~P~~~~~lv~~l~~~~ 201 (302)
T 2ftp_A 174 YEVSLGDT--IG----V--GTAGATRRLIEAVASEV 201 (302)
T ss_dssp SEEEEEES--SS----C--CCHHHHHHHHHHHTTTS
T ss_pred CEEEEeCC--CC----C--cCHHHHHHHHHHHHHhC
Confidence 7 555422 21 1 24555555555555344
No 47
>3v39_A D-alanyl-D-alanine carboxypeptidase; peptidoglycan transpeptidase fold, endopeptidase, serine MOD hepes buffer molecule, hydrolase; HET: PGE; 1.45A {Bdellovibrio bacteriovorus}
Probab=39.94 E-value=19 Score=32.96 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=25.6
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCCC
Q 022752 81 RNVVFMGMGEPLNNYAALVEAVRIMTGLP 109 (292)
Q Consensus 81 ~~I~fsG~GEPll~~~~i~ell~~~~~~g 109 (292)
..+.+.|.|+|+|..+.+.++++.+++.|
T Consensus 68 Gdl~l~G~GDP~l~~~~l~~la~~l~~~G 96 (418)
T 3v39_A 68 YDIHIEGSRDPLFGRNMSYFLISELNRMK 96 (418)
T ss_dssp EEEEEECCCCTTCSHHHHHHHHHHHHHTT
T ss_pred ceEEEEeCCCCCcCHHHHHHHHHHHHHcC
Confidence 35778887999999999999999999987
No 48
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=38.85 E-value=38 Score=24.81 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=13.9
Q ss_pred CceEEEEEcCCCCCcCCcCcCC
Q 022752 32 PRSTLCISSQVGCKMGCNFCAT 53 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~ 53 (292)
.+++||...|.-|+ .|.||..
T Consensus 16 ~~Vvvfsk~t~~~p-~Cp~C~~ 36 (121)
T 3gx8_A 16 APVVLFMKGTPEFP-KCGFSRA 36 (121)
T ss_dssp CSEEEEESBCSSSB-CTTHHHH
T ss_pred CCEEEEEeccCCCC-CCccHHH
Confidence 45788875555544 4889966
No 49
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=37.87 E-value=2e+02 Score=24.83 Aligned_cols=130 Identities=10% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--HHHHhhhC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSDL 135 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~--~~~l~~~~ 135 (292)
.++.+.+.+.++..... ++++|.+.|. || ++|..+.-.++++.+.+. +=+.+ +...+.+|.+... ..+.++..
T Consensus 40 ~iD~~~l~~lv~~li~~-Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvp-ViaGvg~~st~eai~la~~A~~~ 117 (314)
T 3qze_A 40 RLDWDSLAKLVDFHLQE-GTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIP-VIAGTGANSTREAVALTEAAKSG 117 (314)
T ss_dssp CBCHHHHHHHHHHHHHH-TCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSC-EEEECCCSSHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEeCCCcCHHHHHHHHHHHHHc
Q ss_pred CCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-EEEEEEEeCCCCChHHHHHHHHH
Q 022752 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGK 204 (292)
Q Consensus 136 ~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v~i~~vl~~g~nd~~~~l~~l~~ 204 (292)
..+-.+.+ .|.-.+.+-+.+.+..+..++..+.+ +..++.-..|++-+.+.+.+|++
T Consensus 118 -Gadavlv~-----------~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 175 (314)
T 3qze_A 118 -GADACLLV-----------TPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSK 175 (314)
T ss_dssp -TCSEEEEE-----------CCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred -CCCEEEEc-----------CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
No 50
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=37.55 E-value=1.9e+02 Score=24.65 Aligned_cols=130 Identities=11% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--HHHHhhhC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSDL 135 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~--~~~l~~~~ 135 (292)
.++.+.+.+.+...... ++++|.+.|. || ++|..+.-.++++.+.+. +=+++ +...+.+|.+... ..+.++..
T Consensus 21 ~iD~~~l~~lv~~li~~-Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~a~~~ 98 (300)
T 3eb2_A 21 RVRADVMGRLCDDLIQA-GVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVP-VVAGVASTSVADAVAQAKLYEKL 98 (300)
T ss_dssp CBCHHHHHHHHHHHHHT-TCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSC-BEEEEEESSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHc-CCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCc-EEEeCCCCCHHHHHHHHHHHHHc
Q ss_pred CCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-EEEEEEEeCCCCChHHHHHHHHH
Q 022752 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGK 204 (292)
Q Consensus 136 ~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v~i~~vl~~g~nd~~~~l~~l~~ 204 (292)
..+-.+.+ .|.-.+.+-+.+++..+..++..+.+ +..++.-..|++-+.+.+.+|++
T Consensus 99 -Gadavlv~-----------~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 156 (300)
T 3eb2_A 99 -GADGILAI-----------LEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLAE 156 (300)
T ss_dssp -TCSEEEEE-----------ECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHHT
T ss_pred -CCCEEEEc-----------CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHHHHHHHc
No 51
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=37.34 E-value=2e+02 Score=24.74 Aligned_cols=126 Identities=11% Similarity=0.097 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC--chhh--HHHHhhh
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG--IVHA--INKFHSD 134 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG--~~~~--~~~l~~~ 134 (292)
.++.+.+.+.++.... .++++|.+.|. || ++|..+.-.++++.+.+.. + ...+...+.+ +... ..+.++.
T Consensus 25 ~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-g--rvpViaGvg~~~t~~ai~la~~A~~ 100 (313)
T 3dz1_A 25 KIDDVSIDRLTDFYAE-VGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-K--SMQVIVGVSAPGFAAMRRLARLSMD 100 (313)
T ss_dssp CBCHHHHHHHHHHHHH-TTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-T--TSEEEEECCCSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-CCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-C--CCcEEEecCCCCHHHHHHHHHHHHH
Confidence 4555555555554444 47899988775 78 7777666666666665541 1 2455555543 3222 2233333
Q ss_pred CCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhC--CeEEEE-EEEeCCCCChHHHHHHHH
Q 022752 135 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIE-YIMLDGVNDEEQHAHQLG 203 (292)
Q Consensus 135 ~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~--~~v~i~-~vl~~g~nd~~~~l~~l~ 203 (292)
. ..+-.+.+ . +. +. .+-+.+++..+..++..+ .++.+. +.-..|++-+.+.+.+|+
T Consensus 101 ~-Gadavlv~-~--P~-~~--------~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~La 159 (313)
T 3dz1_A 101 A-GAAGVMIA-P--PP-SL--------RTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIV 159 (313)
T ss_dssp H-TCSEEEEC-C--CT-TC--------CSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHH
T ss_pred c-CCCEEEEC-C--CC-CC--------CCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHHH
Confidence 2 23433222 1 11 11 145666777766666666 666543 222335555554444444
No 52
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=37.31 E-value=1.5e+02 Score=24.13 Aligned_cols=19 Identities=5% Similarity=0.060 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhCCcEEEEE
Q 022752 198 HAHQLGKLLETFQVVVNLI 216 (292)
Q Consensus 198 ~l~~l~~~l~~~~~~v~l~ 216 (292)
.+.++++.+++.|+.+.+-
T Consensus 114 ~l~~l~~~a~~~gv~l~lE 132 (257)
T 3lmz_A 114 LLPYVDKKVKEYDFHYAIH 132 (257)
T ss_dssp GHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 4555555555555554443
No 53
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=37.23 E-value=1.9e+02 Score=24.53 Aligned_cols=127 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--HHHHhhhCCCce
Q 022752 65 GEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSDLPGLN 139 (292)
Q Consensus 65 eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~--~~~l~~~~~~~~ 139 (292)
.+.++.+.+..-..++++|.+.|. || ++|..+.-.++++.+.+. +-+.+ +...+.+|.+... ..+.++.. ..+
T Consensus 22 ~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~a~~~-Gad 99 (292)
T 3daq_A 22 LEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVP-VIAGTGTNDTEKSIQASIQAKAL-GAD 99 (292)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSCHHHHHHHHHHHHHH-TCS
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCc-EEEeCCcccHHHHHHHHHHHHHc-CCC
Q ss_pred EEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-EEEEEEEeCCCCChHHHHHHHHH
Q 022752 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGK 204 (292)
Q Consensus 140 l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v~i~~vl~~g~nd~~~~l~~l~~ 204 (292)
-.+.+ .|.-.+.+-+.+++..+..++..+.+ +..++.-..|++-+.+.+.+|++
T Consensus 100 avlv~-----------~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 154 (292)
T 3daq_A 100 AIMLI-----------TPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQ 154 (292)
T ss_dssp EEEEE-----------CCCSSCCCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred EEEEC-----------CCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhc
No 54
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=36.94 E-value=2e+02 Score=24.69 Aligned_cols=166 Identities=10% Similarity=0.045 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCC-----ccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhh
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMG-----EPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 134 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~G-----EPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~ 134 (292)
..++.++.++.+....+ .+++.|-+.+ + -|.+. + ..++++.+++.. ...+...+-. ...++...+.
T Consensus 23 ~~~~~e~k~~i~~~L~~-~Gv~~IE~g~-~~~~~~~p~~~-d-~~~~~~~~~~~~----~~~~~~l~~~-~~~i~~a~~~ 93 (307)
T 1ydo_A 23 VWIATEDKITWINQLSR-TGLSYIEITS-FVHPKWIPALR-D-AIDVAKGIDREK----GVTYAALVPN-QRGLENALEG 93 (307)
T ss_dssp SCCCHHHHHHHHHHHHT-TTCSEEEEEE-CSCTTTCGGGT-T-HHHHHHHSCCCT----TCEEEEECCS-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-cCCCEEEECC-CcCcccccccC-C-HHHHHHHhhhcC----CCeEEEEeCC-HHhHHHHHhC
Confidence 45788887777766544 4777777654 3 35443 2 235666665441 2444443321 2234555555
Q ss_pred CCCceEEEEecCCChH-HHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCC----CCChHHHHHHHHHHHhhC
Q 022752 135 LPGLNLAVSLHAPVQD-VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG----VNDEEQHAHQLGKLLETF 209 (292)
Q Consensus 135 ~~~~~l~iSld~~~~~-~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g----~nd~~~~l~~l~~~l~~~ 209 (292)
+ ...+.+.+.. ++. ....+. ......++.+.+.+ +++++.|..+...+...=+ -..+.+.+.++++.+.+.
T Consensus 94 g-~~~v~i~~~~-sd~~~~~~l~-~s~~e~l~~~~~~v-~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (307)
T 1ydo_A 94 G-INEACVFMSA-SETHNRKNIN-KSTSESLHILKQVN-NDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEF 169 (307)
T ss_dssp T-CSEEEEEEES-SHHHHHTTTC-SCHHHHHHHHHHHH-HHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred C-cCEEEEEeec-CHHHHHHHhC-CCHHHHHHHHHHHH-HHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhc
Confidence 4 2234444433 333 233331 12223345556666 5677788877765543211 012457888888888888
Q ss_pred CcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcC
Q 022752 210 QVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 246 (292)
Q Consensus 210 ~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~ 246 (292)
|+. +.+-.- . . ...++++.++.+.+++..
T Consensus 170 Ga~~i~l~DT--~----G--~~~P~~v~~lv~~l~~~~ 199 (307)
T 1ydo_A 170 GISELSLGDT--I----G--AANPAQVETVLEALLARF 199 (307)
T ss_dssp TCSCEEEECS--S----C--CCCHHHHHHHHHHHHTTS
T ss_pred CCCEEEEcCC--C----C--CcCHHHHHHHHHHHHHhC
Confidence 876 666422 1 1 135566666666665344
No 55
>1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB: 2j9p_A*
Probab=36.22 E-value=31 Score=31.92 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=30.5
Q ss_pred eEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 022752 82 NVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123 (292)
Q Consensus 82 ~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG 123 (292)
.+.|.|.|+|+|..+.+.++++.+++.|+.--.-.+.++.+-
T Consensus 90 dL~l~G~GDPtL~~~~l~~la~~l~~~Gi~~I~G~l~~D~s~ 131 (462)
T 1w5d_A 90 NLYLKGKGDPTLLPSDFDKMAEILKHSGVKVIKGNLIGDDTW 131 (462)
T ss_dssp CEEEEECSCTTCCHHHHHHHHHHHHHTTCCEESSCEEEECTT
T ss_pred eEEEEeCCCCccCHHHHHHHHHHHHHcCCcEEeeeEEEECCc
Confidence 477777799999999999999999988732111145666553
No 56
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=36.16 E-value=2.1e+02 Score=24.60 Aligned_cols=128 Identities=8% Similarity=0.020 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhCC--CCCCCCCeEEEEc--CCchhh--HHHHh
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL--PFQVSPKRITVST--VGIVHA--INKFH 132 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~~--g~~~~~~~i~l~T--NG~~~~--~~~l~ 132 (292)
.++.+.+.+.++.... .++++|.+.|. || ++|..+.-.++++.+.+. | ...+...+ |.+... ..+.+
T Consensus 25 ~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~g----rvpviaGvg~~~t~~ai~la~~A 99 (309)
T 3fkr_A 25 DLDLASQKRAVDFMID-AGSDGLCILANFSEQFAITDDERDVLTRTILEHVAG----RVPVIVTTSHYSTQVCAARSLRA 99 (309)
T ss_dssp SBCHHHHHHHHHHHHH-TTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT----SSCEEEECCCSSHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCC----CCcEEEecCCchHHHHHHHHHHH
Confidence 4555555555554443 47899888775 78 777766666666666543 2 13454444 444322 22333
Q ss_pred hhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEE-EEEeCCCCChHHHHHHHH
Q 022752 133 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE-YIMLDGVNDEEQHAHQLG 203 (292)
Q Consensus 133 ~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~-~vl~~g~nd~~~~l~~l~ 203 (292)
+.. ..+-.+.+ .+ .|... .+.+-+.+.+..+..++..+.++.+. +.. .|++-+.+.+.+|+
T Consensus 100 ~~~-Gadavlv~---~P-yy~~~----~~~s~~~l~~~f~~va~a~~lPiilYn~P~-tg~~l~~~~~~~La 161 (309)
T 3fkr_A 100 QQL-GAAMVMAM---PP-YHGAT----FRVPEAQIFEFYARVSDAIAIPIMVQDAPA-SGTALSAPFLARMA 161 (309)
T ss_dssp HHT-TCSEEEEC---CS-CBTTT----BCCCHHHHHHHHHHHHHHCSSCEEEEECGG-GCCCCCHHHHHHHH
T ss_pred HHc-CCCEEEEc---CC-CCccC----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCCCHHHHHHHH
Confidence 333 24433333 11 11100 01245666677766666666666543 222 45555555455554
No 57
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=36.04 E-value=36 Score=24.28 Aligned_cols=66 Identities=18% Similarity=0.304 Sum_probs=32.4
Q ss_pred CceEEEEEcCCCCCcCCcCcCCCC-------CCCc-CCC-CHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHH
Q 022752 32 PRSTLCISSQVGCKMGCNFCATGT-------MGFK-SNL-SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVE 100 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~~-------~~~~-~~~-~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~e 100 (292)
.++++|...|..+ -.|+||.... ..+. ..+ ...++.+.+.+......+. ..|.+ |+..--++.+.+
T Consensus 18 ~~Vvvy~k~t~~~-p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP-~ifi~-g~~iGG~d~l~~ 92 (109)
T 3ipz_A 18 EKVVLFMKGTRDF-PMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFP-QLYIG-GEFFGGCDITLE 92 (109)
T ss_dssp SSEEEEESBCSSS-BSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSC-EEEET-TEEEECHHHHHH
T ss_pred CCEEEEEecCCCC-CCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCC-eEEEC-CEEEeCHHHHHH
Confidence 4577887544434 4699997621 1111 111 1234444454432222233 45667 777666665543
No 58
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=35.77 E-value=36 Score=28.47 Aligned_cols=50 Identities=6% Similarity=-0.063 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 65 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 65 eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
+++.+.+.+... .+-+.+.+++ |+|+++ ....++++.+++.| ..+.+...
T Consensus 83 ~~~~~~i~~~~~-~g~~Va~l~~-GDP~~~-~~~~~l~~~l~~~g-----i~v~viPG 132 (259)
T 2e0n_A 83 AANYASMAEEVQ-AGRRVAVVSV-GDGGFY-STASAIIERARRDG-----LDCSMTPG 132 (259)
T ss_dssp GGGHHHHHHHHH-TTCEEEEEES-BCTTBS-CTHHHHHHHHHTTT-----CCEEEECC
T ss_pred HHHHHHHHHHHH-CCCeEEEEeC-CCCccc-ccHHHHHHHHHHCC-----CCEEEeCC
Confidence 455566655432 1345677888 999995 66788899999887 56776654
No 59
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*
Probab=35.67 E-value=2.2e+02 Score=24.69 Aligned_cols=84 Identities=10% Similarity=0.051 Sum_probs=50.2
Q ss_pred CcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhhhcCc
Q 022752 79 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 158 (292)
Q Consensus 79 ~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~ 158 (292)
..+.+.++|+++..+. .+.++++.+++.| ..+.+++|+... +.....++. .+|.+....+.+
T Consensus 186 ~~~~v~~~g~~~~~~~--~~~~~~~~a~~~g-----~~v~~D~~~~~~------~~l~~~dil----~pN~~Ea~~l~g- 247 (352)
T 4e84_A 186 QHDVVLMSDYAKGGLT--HVTTMIEKARAAG-----KAVLVDPKGDDW------ARYRGASLI----TPNRAELREVVG- 247 (352)
T ss_dssp GCSEEEEECCSSSSCS--SHHHHHHHHHHTT-----CEEEEECCSSCC------STTTTCSEE----CCBHHHHHHHHC-
T ss_pred cCCEEEEeCCCCCCHH--HHHHHHHHHHhcC-----CEEEEECCCcch------hhccCCcEE----cCCHHHHHHHhC-
Confidence 4578899987765443 3778889998887 789999987421 112234443 345555454443
Q ss_pred ccCccHHHHHHHHHHHHHhhCCe
Q 022752 159 ARAFPLEKLMNALKEYQKNSQQK 181 (292)
Q Consensus 159 ~~~~~~~~vi~~l~~~~~~~~~~ 181 (292)
...+.+++.+.+++++++.+.+
T Consensus 248 -~~~~~~~~~~~a~~l~~~~g~~ 269 (352)
T 4e84_A 248 -QWKSEDDLRARVANLRAELDID 269 (352)
T ss_dssp -CCSSHHHHHHHHHHHHHHHTCS
T ss_pred -CCCCHHHHHHHHHHHHHHhCCC
Confidence 1124566667776655445544
No 60
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Probab=35.26 E-value=1.9e+02 Score=27.01 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhCCeEEEEEEEeC-CCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCc-HHHHHHHHHH
Q 022752 165 EKLMNALKEYQKNSQQKIFIEYIMLD-GVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSS-DDKVSSFQKI 241 (292)
Q Consensus 165 ~~vi~~l~~~~~~~~~~v~i~~vl~~-g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~-~e~l~~~~~~ 241 (292)
+...+++ +.+++.+..+++-=++.+ |+....+++..|++.+++.|+. +.+..|.- +++.++-+ .+-++++.+.
T Consensus 95 ~~~~~~~-~~~~~~~~~~H~~gl~sdggvhsh~~hl~~l~~~a~~~g~~~v~~H~~~d---GrD~~p~s~~~~~~~~~~~ 170 (511)
T 1o98_A 95 ETFLAAM-NHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLD---GRDVGPQTAPQYIKELQEK 170 (511)
T ss_dssp HHHHHHH-HHHHHHTCCEEEEEECSSCCSSCCHHHHHHHHHHHHHTTCCCEEEEEEEC---SSSSCTTCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhcCCeEEEEEeccCCCCccHHHHHHHHHHHHHHCCCCeEEEEEEcc---CCCCCCchHHHHHHHHHHH
Confidence 3444555 445666777888777766 4777789999999999999885 77777753 34555544 4446677777
Q ss_pred HHhcCC
Q 022752 242 LRGSYN 247 (292)
Q Consensus 242 l~~~~g 247 (292)
+. +.|
T Consensus 171 ~~-~~~ 175 (511)
T 1o98_A 171 IK-EYG 175 (511)
T ss_dssp HH-HHT
T ss_pred HH-HhC
Confidence 77 444
No 61
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=35.18 E-value=2.2e+02 Score=24.58 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTG 107 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~ 107 (292)
.++.+.+.+.+..... .++++|.+.|. || ++|..+.-.++++.+.+
T Consensus 28 ~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~ 75 (318)
T 3qfe_A 28 TLDLASQERYYAYLAR-SGLTGLVILGTNAEAFLLTREERAQLIATARK 75 (318)
T ss_dssp EECHHHHHHHHHHHHT-TTCSEEEESSGGGTGGGSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-cCCCEEEeCccccChhhCCHHHHHHHHHHHHH
Confidence 3555555555555444 48899888775 78 67776665666666654
No 62
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=35.04 E-value=45 Score=27.17 Aligned_cols=50 Identities=4% Similarity=-0.015 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 65 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 65 eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
+++.+.+.+... .+-+.+.+++ |+|+++ ....++++.+++.| ..+.+...
T Consensus 81 ~~~~~~i~~~~~-~g~~V~~l~~-GDP~i~-~~~~~l~~~~~~~g-----i~v~viPG 130 (232)
T 2qbu_A 81 DSAARMVAAELE-DGRDVAFITL-GDPSIY-STFSYLQQRIEDMG-----FKTEMVPG 130 (232)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEES-BCTTBS-CSHHHHHHHHHHTT-----CCEEEECC
T ss_pred HHHHHHHHHHHH-CCCeEEEEeC-CCCccc-hhHHHHHHHHHHCC-----CcEEEeCC
Confidence 455566655433 2446777888 999996 66778888888876 55666654
No 63
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=35.00 E-value=2.2e+02 Score=24.54 Aligned_cols=130 Identities=11% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--HHHHhhhC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSDL 135 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~--~~~l~~~~ 135 (292)
.++.+.+.+.++..... +++.|.+.|. || ++|..+.-.++++.+.+. +-+.+ +...+.+|.+... ..+.++..
T Consensus 41 ~iD~~~l~~lv~~li~~-Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvp-ViaGvg~~~t~~ai~la~~A~~~ 118 (315)
T 3na8_A 41 GLDLPALGRSIERLIDG-GVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVP-TIVSVSDLTTAKTVRRAQFAESL 118 (315)
T ss_dssp SBCHHHHHHHHHHHHHT-TCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSC-BEEECCCSSHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEecCCCCHHHHHHHHHHHHhc
Q ss_pred CCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-EEEEEEEeCCCCChHHHHHHH-HH
Q 022752 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQL-GK 204 (292)
Q Consensus 136 ~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v~i~~vl~~g~nd~~~~l~~l-~~ 204 (292)
..+-.+.+ .|.-.+.+-+.+++..+..++..+.+ +..++.-..|++-+.+.+.+| ++
T Consensus 119 -Gadavlv~-----------~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L~a~ 177 (315)
T 3na8_A 119 -GAEAVMVL-----------PISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRIVRE 177 (315)
T ss_dssp -TCSEEEEC-----------CCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred -CCCEEEEC-----------CCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHHHHHHhc
No 64
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=34.89 E-value=2.5e+02 Score=25.10 Aligned_cols=149 Identities=9% Similarity=0.071 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHhhccCCcceEEEecC----CccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh--------HHH
Q 022752 63 SSGEIVEQLVHASRLSNIRNVVFMGM----GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA--------INK 130 (292)
Q Consensus 63 ~~eei~~~i~~~~~~~~~~~I~fsG~----GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~--------~~~ 130 (292)
+.++..+.+..+.. .|...| ||.. +++-...+.+.++++++++.| +.+.++.|..... +..
T Consensus 15 ~~~~~~~yi~~a~~-~Gf~~I-FTSL~~~e~~~~~~~~~~~~l~~~a~~~g-----~~vi~DIsp~~l~~Lg~s~~dl~~ 87 (372)
T 2p0o_A 15 ITNDTIIYIKKMKA-LGFDGI-FTSLHIPEDDTSLYRQRLTDLGAIAKAEK-----MKIMVDISGEALKRAGFSFDELEP 87 (372)
T ss_dssp CCHHHHHHHHHHHH-TTCCEE-EEEECCC-----CHHHHHHHHHHHHHHHT-----CEEEEEECHHHHHTTTCBTTBCHH
T ss_pred CHHHHHHHHHHHHH-CCCCEE-EccCCccCCChHHHHHHHHHHHHHHHHCC-----CEEEEECCHHHHHHcCCCHHHHHH
Confidence 34555556665544 244333 3321 344444577899999999998 7899998863311 122
Q ss_pred HhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCC
Q 022752 131 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 210 (292)
Q Consensus 131 l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~ 210 (292)
+.+.+ ...+.+ +.+.+.+.+.+ +. .+.++.+|.-.+ +.+++..+.+.-....
T Consensus 88 ~~~lG-i~glRL----------------D~Gf~~~eia~----ls--~nlkIeLNASti-----~~~~l~~l~~~~~n~~ 139 (372)
T 2p0o_A 88 LIELG-VTGLRM----------------DYGITIEQMAH----AS--HKIDIGLNASTI-----TLEEVAELKAHQADFS 139 (372)
T ss_dssp HHHHT-CCEEEE----------------CSSCCHHHHHH----HH--TTSEEEEETTTC-----CHHHHHHHHHTTCCGG
T ss_pred HHHcC-CCEEEE----------------cCCCCHHHHHH----Hh--cCCEEEEECccC-----CHHHHHHHHHcCCChH
Confidence 22221 122222 22233332222 11 124555553321 4556666655333221
Q ss_pred cEEEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEE
Q 022752 211 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251 (292)
Q Consensus 211 ~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ 251 (292)
....-.-|+|. .+...+.+.+.+--+.++ ++|+++.
T Consensus 140 ~l~a~HNFYPr----~~TGLs~~~f~~~n~~~k-~~Gi~t~ 175 (372)
T 2p0o_A 140 RLEAWHNYYPR----PETGIGTTFFNEKNRWLK-ELGLQVF 175 (372)
T ss_dssp GEEEECCCCCS----TTCSBCHHHHHHHHHHHH-HTTCEEE
T ss_pred HeEEeeccCCC----CCCCCCHHHHHHHHHHHH-HCCCcEE
Confidence 12344556665 344568888888888899 8999864
No 65
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=34.67 E-value=2.2e+02 Score=24.34 Aligned_cols=128 Identities=15% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CC-CCCCCeEEEEcCCchhh--HHHHhhhCCCc
Q 022752 65 GEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PF-QVSPKRITVSTVGIVHA--INKFHSDLPGL 138 (292)
Q Consensus 65 eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~~-g~-~~~~~~i~l~TNG~~~~--~~~l~~~~~~~ 138 (292)
.+.++.+.+..-..++++|.+.|. || ++|..+.-.++++.+.+. +- +.+ +...+.+|.+... ..+.++.. ..
T Consensus 27 ~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvp-viaGvg~~~t~~ai~la~~a~~~-Ga 104 (301)
T 3m5v_A 27 EQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVK-VLAGAGSNATHEAVGLAKFAKEH-GA 104 (301)
T ss_dssp HHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCE-EEEECCCSSHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCe-EEEeCCCCCHHHHHHHHHHHHHc-CC
Q ss_pred eEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-EEEEEEEeCCCCChHHHHHHHHHH
Q 022752 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 205 (292)
Q Consensus 139 ~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v~i~~vl~~g~nd~~~~l~~l~~~ 205 (292)
+-.+.+ .|.-.+.+-+.+.+..+..++..+.+ +..++.-..|++-+.+.+.+|++.
T Consensus 105 davlv~-----------~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~ 161 (301)
T 3m5v_A 105 DGILSV-----------APYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRD 161 (301)
T ss_dssp SEEEEE-----------CCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred CEEEEc-----------CCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHHhc
No 66
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=34.06 E-value=49 Score=24.19 Aligned_cols=65 Identities=15% Similarity=0.287 Sum_probs=32.5
Q ss_pred CceEEEEEcCCCCCcCCcCcCCC-------CCC-Cc-CCC-CHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHH
Q 022752 32 PRSTLCISSQVGCKMGCNFCATG-------TMG-FK-SNL-SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALV 99 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~-------~~~-~~-~~~-~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ 99 (292)
.++++|...|..|| .|+||... ... +. ..+ ..+++.+.+.+......+ -.+|.+ |+..--++.+.
T Consensus 20 ~~Vvvfsk~t~~~p-~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tv-P~vfI~-g~~IGG~d~l~ 94 (118)
T 2wem_A 20 DKVVVFLKGTPEQP-QCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTI-PQVYLN-GEFVGGCDILL 94 (118)
T ss_dssp SSEEEEESBCSSSB-SSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSS-CEEEET-TEEEESHHHHH
T ss_pred CCEEEEEecCCCCC-ccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCc-CeEEEC-CEEEeChHHHH
Confidence 35778875555544 48999762 111 11 111 224555555543222223 344667 77766666543
No 67
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=33.42 E-value=1.1e+02 Score=27.56 Aligned_cols=59 Identities=10% Similarity=0.175 Sum_probs=44.6
Q ss_pred CCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEEe
Q 022752 192 VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 252 (292)
Q Consensus 192 ~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~i 252 (292)
+| +.+...++++.+++.|.. +.+..|.|......|+.+..+.+..+.++.+ +.|+++..
T Consensus 152 ve-s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~-~~Gl~~~t 211 (385)
T 3nvt_A 152 VE-SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSD-EYGLGVIS 211 (385)
T ss_dssp CC-CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHH-HHTCEEEE
T ss_pred cC-CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHH-HcCCEEEE
Confidence 44 677888999999999887 6666777654334566778888888888888 78988643
No 68
>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB: 1w8q_A 1w8y_A* 2vgj_A* 2vgk_A* 2xln_A* 2y5o_A* 2xdm_A* 2xk1_A* 2y4a_A* 2y55_A* 2y59_A* 2wke_A* 2y5r_A* 3zvt_A* 3zvw_A*
Probab=32.93 E-value=38 Score=31.59 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=30.2
Q ss_pred eEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 82 NVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 82 ~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
.+.+.|.|+|+|..+.+.++++.+++.|+.--.-.+.++.+
T Consensus 87 dL~l~G~GDPtL~~~~L~~La~~L~~~GI~~I~G~lv~D~s 127 (489)
T 1w79_A 87 DLYLVGRGDPTLSAEDLDAMAAEVAASGVRTVRGDLYADDT 127 (489)
T ss_dssp CEEEEECSCTTCCHHHHHHHHHHHHHTTCCEECSCEEEECT
T ss_pred cEEEEeCCCCccCHHHHHHHHHHHHHcCCcEEeeeEEEECC
Confidence 47777779999999999999999998874211124566655
No 69
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=32.14 E-value=52 Score=28.27 Aligned_cols=53 Identities=26% Similarity=0.238 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
...+++.+.+.+.... +-+.+.+.+ |+|+++ ....++++.+++.| ..+.+...
T Consensus 86 ~~~~~i~~~l~~~~~~-G~~Vv~L~~-GDP~i~-g~g~~l~~~l~~~g-----i~vevIPG 138 (294)
T 2ybo_A 86 LPQEEINELLVRLARQ-QRRVVRLKG-GDPFIF-GRGAEELERLLEAG-----VDCQVVPG 138 (294)
T ss_dssp -CHHHHHHHHHHHHHT-TCCEEEEEE-BCTTSS-SSHHHHHHHHHHTT-----CCEEEECC
T ss_pred CCHHHHHHHHHHHHHC-CCeEEEEcC-CCCCcc-CCHHHHHHHHHHCC-----CCEEEECC
Confidence 3456666666654332 445677788 999996 65678888888776 55776654
No 70
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=32.00 E-value=53 Score=26.93 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
...+++.+.+.+.... +-+.+.+.+ |+|+++ ....++++.+++.| ..+.+...
T Consensus 62 ~~~~~~~~~i~~~~~~-g~~V~~l~~-GDP~i~-~~~~~l~~~l~~~g-----i~v~viPG 114 (235)
T 1ve2_A 62 TPQEAITARLIALARE-GRVVARLKG-GDPMVF-GRGGEEALALRRAG-----IPFEVVPG 114 (235)
T ss_dssp CCHHHHHHHHHHHHHT-TCEEEEEES-BCTTSS-TTHHHHHHHHHHHT-----CCEEEECC
T ss_pred cCHHHHHHHHHHHHHc-CCeEEEEcC-CCCCcc-cCHHHHHHHHHHCC-----CCEEEECC
Confidence 3456777766654332 345566688 999996 65667788887766 45666654
No 71
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=30.63 E-value=55 Score=28.45 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhhCCcE-EEEE-ecCCCCCCCCcCCCcHHHHHH-HHHHHHhcCCeEEEeecccccccccccccccccC
Q 022752 195 EEQHAHQLGKLLETFQVV-VNLI-PFNPIGSVSQFRTSSDDKVSS-FQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 271 (292)
Q Consensus 195 ~~~~l~~l~~~l~~~~~~-v~l~-p~~p~~~~~~~~~~~~e~l~~-~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~~ 271 (292)
+..+..++++.+.+.|+. +-++ ||+. .++++.+.. |+++++ ..++++.+=+. |.++.+..-.-+.++
T Consensus 91 ~t~~ai~la~~A~~~Gadavlv~~P~y~--------~~s~~~l~~~f~~va~-a~~lPiilYn~-g~~l~~~~~~~La~~ 160 (316)
T 3e96_A 91 ATSTAIELGNAAKAAGADAVMIHMPIHP--------YVTAGGVYAYFRDIIE-ALDFPSLVYFK-DPEISDRVLVDLAPL 160 (316)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCCCS--------CCCHHHHHHHHHHHHH-HHTSCEEEEEC-CTTSCTHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCC--------CCCHHHHHHHHHHHHH-hCCCCEEEEeC-CCCCCHHHHHHHHcC
Confidence 556777788888888776 3332 3321 245555544 444444 45677654443 555543322222355
Q ss_pred cCcccCCCC
Q 022752 272 PDKISAKST 280 (292)
Q Consensus 272 ~~~~~~~~~ 280 (292)
|.-+..|-+
T Consensus 161 pnIvgiKds 169 (316)
T 3e96_A 161 QNLVGVKYA 169 (316)
T ss_dssp TTEEEEEEC
T ss_pred CCEEEEEeC
Confidence 554444433
No 72
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=30.45 E-value=58 Score=26.96 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhccCCcceEEEe-cCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEc
Q 022752 65 GEIVEQLVHASRLSNIRNVVFM-GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVST 121 (292)
Q Consensus 65 eei~~~i~~~~~~~~~~~I~fs-G~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~T 121 (292)
++..+.+.+.... +-+.+.++ + |+|++. +...++++.+++.| ..+.+..
T Consensus 70 ~~~~~~i~~~~~~-G~~Va~ls~~-GdP~i~-~~g~~l~~~l~~~g-----i~vevIP 119 (242)
T 1wyz_A 70 PEDISGYLKPLAG-GASMGVISEA-GCPAVA-DPGADVVAIAQRQK-----LKVIPLV 119 (242)
T ss_dssp HHHHHHHHHHHHT-TCCEEEECC---------CHHHHHHHHHHHTT-----CCEEECC
T ss_pred HHHHHHHHHHHHc-CCEEEEEecC-CCCccc-CcHHHHHHHHHHCC-----CCEEEeC
Confidence 4555555554332 44455665 8 999995 66778888888777 4566553
No 73
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=29.90 E-value=70 Score=26.23 Aligned_cols=53 Identities=21% Similarity=0.141 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
.+.+++.+.+.+.... +-+.+.+.+ |+|+++ ....++++.+++.| ..+.+...
T Consensus 59 ~~~~~~~~~i~~~~~~-g~~V~~l~~-GDP~i~-~~~~~l~~~l~~~g-----i~v~viPG 111 (239)
T 1va0_A 59 EKQEEIHRLLLRHARA-HPFVVRLKG-GDPMVF-GRGGEEVLFLLRHG-----VPVEVVPG 111 (239)
T ss_dssp -CHHHHHHHHHHHHHT-SSEEEEEES-BCTTSS-SSHHHHHHHHHHTT-----CCEEEECC
T ss_pred cCHHHHHHHHHHHHHC-CCcEEEEeC-CCCccc-cCHHHHHHHHHHCC-----CcEEEECC
Confidence 3456777766654331 345566788 999996 55667888887776 45666654
No 74
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=29.76 E-value=2.8e+02 Score=24.06 Aligned_cols=168 Identities=12% Similarity=0.021 Sum_probs=82.5
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCC--C
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLP--G 137 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~--~ 137 (292)
..++.++-++.+....+ .+++.|-+. =|..++... +.++.+.+.. +...+..-+-+....++...+.+. .
T Consensus 23 ~~~~~~~Kl~ia~~L~~-~Gv~~IE~g---~p~~~~~d~-e~v~~i~~~~---~~~~i~~l~r~~~~~i~~a~~al~~ag 94 (325)
T 3eeg_A 23 CQLNTEEKIIVAKALDE-LGVDVIEAG---FPVSSPGDF-NSVVEITKAV---TRPTICALTRAKEADINIAGEALRFAK 94 (325)
T ss_dssp --CCTTHHHHHHHHHHH-HTCSEEEEE---CTTSCHHHH-HHHHHHHHHC---CSSEEEEECCSCHHHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHHHHH-cCCCEEEEe---CCCCCHhHH-HHHHHHHHhC---CCCEEEEeecCCHHHHHHHHHhhcccC
Confidence 45677776666665443 267766553 366665433 3334444321 124555544333323333233311 1
Q ss_pred ce-EEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEE
Q 022752 138 LN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNL 215 (292)
Q Consensus 138 ~~-l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l 215 (292)
.+ +.+.+.+ ++.....-.+......++.+.+.+ +++++.+..+.+..... + ..+.+.+.++++.+.+.|+. +.+
T Consensus 95 ~~~v~i~~s~-Sd~~~~~~l~~s~~e~l~~~~~~v-~~a~~~g~~v~f~~~d~-~-~~~~~~~~~~~~~~~~~G~~~i~l 170 (325)
T 3eeg_A 95 RSRIHTGIGS-SDIHIEHKLRSTRENILEMAVAAV-KQAKKVVHEVEFFCEDA-G-RADQAFLARMVEAVIEAGADVVNI 170 (325)
T ss_dssp SEEEEEEEEC-SHHHHC----CCCTTGGGTTHHHH-HHHHTTSSEEEEEEETG-G-GSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred CCEEEEEecc-cHHHHHHHhCCCHHHHHHHHHHHH-HHHHHCCCEEEEEcccc-c-cchHHHHHHHHHHHHhcCCCEEEe
Confidence 33 3333322 333322212223445677777777 67788888776554421 1 23457788888888888876 444
Q ss_pred EecCCCCCCCCcCCCcHHHHHHHHHHHHhcCC
Q 022752 216 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 247 (292)
Q Consensus 216 ~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g 247 (292)
- -. ..+ ..+.++..+.+.+++..+
T Consensus 171 ~---DT---~G~--~~P~~v~~lv~~l~~~~~ 194 (325)
T 3eeg_A 171 P---DT---TGY--MLPWQYGERIKYLMDNVS 194 (325)
T ss_dssp C---BS---SSC--CCHHHHHHHHHHHHHHCS
T ss_pred c---Cc---cCC--cCHHHHHHHHHHHHHhCC
Confidence 2 11 122 345566666555553444
No 75
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=29.64 E-value=2.8e+02 Score=24.09 Aligned_cols=182 Identities=12% Similarity=0.023 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHH-HhhccCCcceEEEecCCccccCH---HHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhh
Q 022752 60 SNLSSGEIVEQLV-HASRLSNIRNVVFMGMGEPLNNY---AALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 134 (292)
Q Consensus 60 ~~~~~eei~~~i~-~~~~~~~~~~I~fsG~GEPll~~---~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~ 134 (292)
..++.++.++.+. ...+ .+++.|-+.+ |..++ +.+.++.+..... . ++...+...+.+.. .++...+.
T Consensus 36 ~~~~~~~k~~i~~~~L~~-~Gv~~IE~g~---~~~~~~~~~~v~~~~~~~~~~~~--~~~~~i~~l~~~~~-~i~~a~~~ 108 (337)
T 3ble_A 36 VSFSTSEKLNIAKFLLQK-LNVDRVEIAS---ARVSKGELETVQKIMEWAATEQL--TERIEILGFVDGNK-TVDWIKDS 108 (337)
T ss_dssp CCCCHHHHHHHHHHHHHT-TCCSEEEEEE---TTSCTTHHHHHHHHHHHHHHTTC--GGGEEEEEESSTTH-HHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH-cCCCEEEEeC---CCCChhHHHHHHHHHhhhhhhcc--CCCCeEEEEccchh-hHHHHHHC
Confidence 4578888777777 5544 4788777654 33333 4444444321100 1 11134444444332 34455555
Q ss_pred CCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeC-CCCChHHHHHHHHHHHhhCCcE-
Q 022752 135 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD-GVNDEEQHAHQLGKLLETFQVV- 212 (292)
Q Consensus 135 ~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~-g~nd~~~~l~~l~~~l~~~~~~- 212 (292)
+. ..+.+.+...+......+. ......++.+.+.+ +++++.|..+.+...-.+ ..-.+.+.+.++++.+.+.|+.
T Consensus 109 g~-~~v~i~~~~s~~~~~~~~~-~s~~e~l~~~~~~v-~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 185 (337)
T 3ble_A 109 GA-KVLNLLTKGSLHHLEKQLG-KTPKEFFTDVSFVI-EYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEHIER 185 (337)
T ss_dssp TC-CEEEEEEECSHHHHHHHTC-CCHHHHHHHHHHHH-HHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSCCSE
T ss_pred CC-CEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHH-HHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcCCCE
Confidence 42 2233444333333333332 22233455555666 556777887766543210 1011346677888888888876
Q ss_pred EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcC-CeE--EEeecccccc
Q 022752 213 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY-NIR--TTVRKQMGQD 259 (292)
Q Consensus 213 v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~-g~~--v~ir~~~g~~ 259 (292)
+.+-.-.. + ..++++.++.+.+++.. +++ +......|..
T Consensus 186 i~l~DT~G------~--~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA 227 (337)
T 3ble_A 186 IFLPDTLG------V--LSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLS 227 (337)
T ss_dssp EEEECTTC------C--CCHHHHHHHHHHHHHHCTTSCEEEECBCTTSCH
T ss_pred EEEecCCC------C--cCHHHHHHHHHHHHHhcCCCeEEEEecCCcchH
Confidence 65532211 1 24556555555554334 333 3444455544
No 76
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=29.11 E-value=1.9e+02 Score=23.38 Aligned_cols=101 Identities=9% Similarity=0.067 Sum_probs=46.7
Q ss_pred HHHHhhhCCCceEEE-EecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCC------h-HHHH
Q 022752 128 INKFHSDLPGLNLAV-SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND------E-EQHA 199 (292)
Q Consensus 128 ~~~l~~~~~~~~l~i-Sld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd------~-~~~l 199 (292)
..++.+.....++.+ ++++..+ +...+ ....+.+.+.+ ++++..|.+..+ +.++... . .+.+
T Consensus 53 ~~~~~~~~~~~gl~~~~~~~~~~-----~~~~~-~~~~~~~~~~i-~~a~~lG~~~v~---~~~g~~~~~~~~~~~~~~l 122 (272)
T 2q02_A 53 YNQVRNLAEKYGLEIVTINAVYP-----FNQLT-EEVVKKTEGLL-RDAQGVGARALV---LCPLNDGTIVPPEVTVEAI 122 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEEEETT-----TTSCC-HHHHHHHHHHH-HHHHHHTCSEEE---ECCCCSSBCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEechhhhc-----cCCcH-HHHHHHHHHHH-HHHHHhCCCEEE---EccCCCchhHHHHHHHHHH
Confidence 556655554456777 6654421 11111 11123334444 455556655432 2344221 1 4556
Q ss_pred HHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHHHHHHHHHH
Q 022752 200 HQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 242 (292)
Q Consensus 200 ~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l 242 (292)
.++++.+++.|+.+.+-+.. . + .....+.+++.++.+.+
T Consensus 123 ~~l~~~a~~~gv~l~~E~~~-~-~--~~~~~~~~~~~~l~~~v 161 (272)
T 2q02_A 123 KRLSDLFARYDIQGLVEPLG-F-R--VSSLRSAVWAQQLIREA 161 (272)
T ss_dssp HHHHHHHHTTTCEEEECCCC-S-T--TCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEecC-C-C--cccccCHHHHHHHHHHh
Confidence 66777777777765553322 1 0 11223555555555544
No 77
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=28.65 E-value=87 Score=20.91 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=25.2
Q ss_pred CccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCh-HHH-HHHHHHHHhhCCc
Q 022752 161 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDE-EQH-AHQLGKLLETFQV 211 (292)
Q Consensus 161 ~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~-~~~-l~~l~~~l~~~~~ 211 (292)
+..+++.++.+.+.+...|.+ .+++++... ||. ..+ ++-+++++..+|.
T Consensus 28 gkeleralqelekalaragar-nvqitisae-ndeqakelleliarllqklgy 78 (96)
T 2jvf_A 28 GKELERALQELEKALARAGAR-NVQITISAE-NDEQAKELLELIARLLQKLGY 78 (96)
T ss_dssp SSHHHHHHHHHHHHHHHHTCS-EEEEEEECS-SHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHhcccc-ceEEEEEec-ChHHHHHHHHHHHHHHHHhCC
Confidence 346777888887766665532 334444432 332 122 2334555555554
No 78
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=28.50 E-value=2.7e+02 Score=23.55 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--HHHHhhhC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSDL 135 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~--~~~l~~~~ 135 (292)
.++.+.+.+.+...... +++++.+.|. || ++|..+.-.++++.+.+. +=+.+ +...+.+|.+... ..+.++..
T Consensus 18 ~iD~~~l~~lv~~li~~-Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~p-viaGvg~~~t~~ai~la~~a~~~ 95 (291)
T 3tak_A 18 GVDWKSLEKLVEWHIEQ-GTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIP-IIAGTGANSTREAIELTKAAKDL 95 (291)
T ss_dssp CBCHHHHHHHHHHHHHH-TCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHC-CCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCe-EEEeCCCCCHHHHHHHHHHHHhc
Q ss_pred CCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-EEEEEEEeCCCCChHHHHHHHHH
Q 022752 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGK 204 (292)
Q Consensus 136 ~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v~i~~vl~~g~nd~~~~l~~l~~ 204 (292)
..+-.+.+ .|.-.+.+-+.+++..+..++..+.+ +..++.-..|++-+.+.+.+|++
T Consensus 96 -Gadavlv~-----------~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 153 (291)
T 3tak_A 96 -GADAALLV-----------TPYYNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLAE 153 (291)
T ss_dssp -TCSEEEEE-----------CCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHTT
T ss_pred -CCCEEEEc-----------CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHHHHHHc
No 79
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=27.54 E-value=83 Score=28.40 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCC----------CcHHHHHHHHHHHHhcCCeEEEee
Q 022752 198 HAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRT----------SSDDKVSSFQKILRGSYNIRTTVR 253 (292)
Q Consensus 198 ~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~----------~~~e~l~~~~~~l~~~~g~~v~ir 253 (292)
.+.+-+++|+++|+. |.+.|..+.+....|.. =+.+++.++.+.+. +.|+.|.+-
T Consensus 24 gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~GY~~~dy~~idp~~Gt~~df~~lv~~aH-~~Gi~VilD 89 (441)
T 1lwj_A 24 GLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFH-DSGIKVVLD 89 (441)
T ss_dssp HHHHTHHHHHHTTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHH-HTTCEEEEE
T ss_pred HHHHhhHHHHHcCCCEEEeCCCcCCCCCCCCCcccccccCcccCCHHHHHHHHHHHH-HCCCEEEEE
Confidence 333344566666665 55555443321111111 15788888888888 789987543
No 80
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=27.39 E-value=3.5e+02 Score=24.51 Aligned_cols=179 Identities=8% Similarity=0.066 Sum_probs=90.5
Q ss_pred CCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhCCCce
Q 022752 60 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 139 (292)
Q Consensus 60 ~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~ 139 (292)
..++.++-++.+....+ .|++.|-. |-|-..+. ..+.++.+.+.++. ..+....-.....+....+.+. ..
T Consensus 56 ~~~s~eeKl~Ia~~L~~-~Gv~~IEv---G~P~asp~-d~~~~~~i~~~~~~---~~v~~~~r~~~~di~~A~~aG~-~~ 126 (423)
T 3ivs_A 56 AFFDTEKKIQIAKALDN-FGVDYIEL---TSPVASEQ-SRQDCEAICKLGLK---CKILTHIRCHMDDARVAVETGV-DG 126 (423)
T ss_dssp CCCCHHHHHHHHHHHHH-HTCSEEEE---CCTTSCHH-HHHHHHHHHTSCCS---SEEEEEEESCHHHHHHHHHTTC-SE
T ss_pred CCcCHHHHHHHHHHHHH-cCCCEEEE---eecccCHH-HHHHHHHHHhcCCC---CEEEEeeccChhhHHHHHHcCC-CE
Confidence 46788887777666544 36777665 34777644 55777888776532 2222111111222444444432 22
Q ss_pred EEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEec
Q 022752 140 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPF 218 (292)
Q Consensus 140 l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~ 218 (292)
+.+.+-+.+......+ +.+....++.+.+.+ +++++.|..+.+... ...-.+.+.+.++++.+.+.|+. +.+-.-
T Consensus 127 V~i~~s~Sd~~~~~~l-~~s~~e~l~~~~~~v-~~ak~~G~~V~~~~e--da~r~d~~~~~~v~~~~~~~Ga~~i~l~DT 202 (423)
T 3ivs_A 127 VDVVIGTSQYLRKYSH-GKDMTYIIDSATEVI-NFVKSKGIEVRFSSE--DSFRSDLVDLLSLYKAVDKIGVNRVGIADT 202 (423)
T ss_dssp EEEEEEC--------------CHHHHHHHHHH-HHHHTTTCEEEEEEE--SGGGSCHHHHHHHHHHHHHHCCSEEEEEET
T ss_pred EEEEeeccHHHHHHHc-CCCHHHHHHHHHHHH-HHHHHCCCEEEEEEc--cCcCCCHHHHHHHHHHHHHhCCCccccCCc
Confidence 3343322221111122 112234466667777 677788887766532 33334567788888888888876 555322
Q ss_pred CCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEE--Eeecccccc
Q 022752 219 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT--TVRKQMGQD 259 (292)
Q Consensus 219 ~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v--~ir~~~g~~ 259 (292)
.. + ..+.++..+.+.+++..++++ ...+..|.-
T Consensus 203 vG------~--~~P~~v~~lv~~l~~~~~~~i~~H~Hnd~GlA 237 (423)
T 3ivs_A 203 VG------C--ATPRQVYDLIRTLRGVVSCDIECHFHNDTGMA 237 (423)
T ss_dssp TS------C--CCHHHHHHHHHHHHHHCSSEEEEEEBCTTSCH
T ss_pred cC------c--CCHHHHHHHHHHHHhhcCCeEEEEECCCCchH
Confidence 21 1 244555555555553344443 344455544
No 81
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=27.14 E-value=90 Score=29.50 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhCCcE-EEEEecCCCCCC-----CCcCC-----CcHHHHHHHHHHHHhcCCeEEEee
Q 022752 196 EQHAHQLGKLLETFQVV-VNLIPFNPIGSV-----SQFRT-----SSDDKVSSFQKILRGSYNIRTTVR 253 (292)
Q Consensus 196 ~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~-----~~~~~-----~~~e~l~~~~~~l~~~~g~~v~ir 253 (292)
...+.+-+++|+++|+. |.+.|..+.... .+|.. -+.+++.++.+.+. +.|+.|.+-
T Consensus 171 ~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H-~~Gi~VilD 238 (583)
T 1ea9_C 171 LQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCH-ERGIRVLLD 238 (583)
T ss_dssp HHHHHHTHHHHHHHTCSEEEECCCSSCSSSSTTSCSCTTCCCTTTCCHHHHHHHHHHHT-TTTCEEEEE
T ss_pred HHHHHHhhHHHHHcCCCEEEECCCccCCCCCCcCcccccccCcccCCHHHHHHHHHHHH-HCCCEEEEE
Confidence 34444445788888887 888876554211 11211 15788888888888 789998654
No 82
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=26.48 E-value=45 Score=30.52 Aligned_cols=22 Identities=5% Similarity=0.280 Sum_probs=17.2
Q ss_pred cHHHHHHHHHHHHhcCCeEEEee
Q 022752 231 SDDKVSSFQKILRGSYNIRTTVR 253 (292)
Q Consensus 231 ~~e~l~~~~~~l~~~~g~~v~ir 253 (292)
+.+++.++.+.+. +.|+.|.+-
T Consensus 95 t~~df~~lv~~~h-~~Gi~VilD 116 (475)
T 2z1k_A 95 GNEALRHLLEVAH-AHGVRVILD 116 (475)
T ss_dssp CHHHHHHHHHHHH-HTTCEEEEE
T ss_pred CHHHHHHHHHHHH-HCCCEEEEE
Confidence 4688888888888 789987544
No 83
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=26.26 E-value=1.2e+02 Score=25.97 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHhhccCCcceEEEe-cCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 63 SSGEIVEQLVHASRLSNIRNVVFM-GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 63 ~~eei~~~i~~~~~~~~~~~I~fs-G~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
+.++..+.+.+... .+-..+.++ + |+|+++ +.-.++++.+++.| ..+.+...
T Consensus 73 ~~~~~~~~li~~l~-~G~~Va~lsda-GdP~i~-~~g~~lv~~~~~~g-----i~v~viPG 125 (296)
T 3kwp_A 73 NTQERIPQLIAKLK-QGMQIAQVSDA-GMPSIS-DPGHELVNACIDAH-----IPVVPLPG 125 (296)
T ss_dssp THHHHHHHHHHHHH-TTCEEEEECSS-BCTTSS-HHHHHHHHHHHHTT-----CCEEECCC
T ss_pred chhhHhHHHHHHHh-cCceEEEeccC-CCCCCC-CCchHHHHHHHHcC-----CCeeeCCC
Confidence 34566666665433 144566677 7 999996 76788999998877 45665543
No 84
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=25.51 E-value=3.2e+02 Score=23.35 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhCC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL 108 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~~ 108 (292)
.++.+.+.+.+..... .++++|.+.|. || ++|..+.-.++++.+.+.
T Consensus 31 ~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~ 79 (307)
T 3s5o_A 31 EVDYGKLEENLHKLGT-FPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQA 79 (307)
T ss_dssp CBCHHHHHHHHHHHTT-SCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECccccchhhCCHHHHHHHHHHHHHH
Confidence 4555555555555443 47899988875 78 777777677777777664
No 85
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=25.47 E-value=2.8e+02 Score=22.72 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCC
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 109 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g 109 (292)
.+.++.++.+.+. +.+.|-+.+ ..+ ...+.++-+.+++.|
T Consensus 38 ~~~~~~l~~~~~~----G~~~vEl~~-~~~---~~~~~~~~~~l~~~g 77 (287)
T 3kws_A 38 ESLNEKLDFMEKL----GVVGFEPGG-GGL---AGRVNEIKQALNGRN 77 (287)
T ss_dssp SSHHHHHHHHHHT----TCCEEECBS-TTC---GGGHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHc----CCCEEEecC-Cch---HHHHHHHHHHHHHcC
Confidence 3555655555442 567777777 422 234566666666666
No 86
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=25.24 E-value=64 Score=22.89 Aligned_cols=26 Identities=0% Similarity=-0.257 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCchh
Q 022752 96 AALVEAVRIMTGLPFQVSPKRITVSTVGIVH 126 (292)
Q Consensus 96 ~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~ 126 (292)
+.+.++++.+++.| ..+.+.||+...
T Consensus 21 ~~~~~~l~~L~~~G-----~~~~i~S~~~~~ 46 (137)
T 2pr7_A 21 RRWRNLLAAAKKNG-----VGTVILSNDPGG 46 (137)
T ss_dssp HHHHHHHHHHHHTT-----CEEEEEECSCCG
T ss_pred ccHHHHHHHHHHCC-----CEEEEEeCCCHH
Confidence 55789999999888 789999998543
No 87
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=25.14 E-value=76 Score=30.04 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCC----------CcHHHHHHHHHHHHhcCCeEEEee
Q 022752 196 EQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRT----------SSDDKVSSFQKILRGSYNIRTTVR 253 (292)
Q Consensus 196 ~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~----------~~~e~l~~~~~~l~~~~g~~v~ir 253 (292)
...+.+-+++|+++|+. |.+.|..+......|.. -+.+++.++.+.+. +.|+.|.+-
T Consensus 175 ~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H-~~Gi~VilD 242 (588)
T 1j0h_A 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCH-EKGIRVMLD 242 (588)
T ss_dssp HHHHHHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHH-HTTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCcCccccCccCccCCCHHHHHHHHHHHH-HCCCEEEEE
Confidence 34444445777777776 77776543321111211 24788888888888 789987544
No 88
>2kl5_A Uncharacterized protein YUTD; structural genomics, protein northeast structural genom consortium (NESG), target SR232, PSI-2; NMR {Bacillus subtilis}
Probab=25.12 E-value=19 Score=26.26 Aligned_cols=12 Identities=25% Similarity=0.802 Sum_probs=9.3
Q ss_pred CCCCcCCcCcCC
Q 022752 42 VGCKMGCNFCAT 53 (292)
Q Consensus 42 ~gCNl~C~yC~~ 53 (292)
.-||+.|.|=--
T Consensus 86 EYCNFGCaYFVL 97 (110)
T 2kl5_A 86 EYCNFGCAYFVL 97 (110)
T ss_dssp HSSCSSCCEEEE
T ss_pred HHccCCCceEEE
Confidence 469999998643
No 89
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=24.65 E-value=1e+02 Score=26.09 Aligned_cols=78 Identities=9% Similarity=0.075 Sum_probs=41.4
Q ss_pred HHHHHHHHhhCCeEEEEEEEeCCCC--------ChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcH-------H
Q 022752 169 NALKEYQKNSQQKIFIEYIMLDGVN--------DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD-------D 233 (292)
Q Consensus 169 ~~l~~~~~~~~~~v~i~~vl~~g~n--------d~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~-------e 233 (292)
+.+++.++++|..+..-..-. .++ ...+.+++.+++++.+|+..-+++..+. . .+. +
T Consensus 79 ~~l~~~l~~~GL~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~~~----~---~~~~~~~~~~~ 150 (305)
T 3obe_A 79 KDYKKMVDDAGLRISSSHLTP-SLREYTKENMPKFDEFWKKATDIHAELGVSCMVQPSLPR----I---ENEDDAKVVSE 150 (305)
T ss_dssp HHHHHHHHHTTCEEEEEBCCC-SCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEEECCCCC----C---SSHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEeeccc-cccccchhhHHHHHHHHHHHHHHHHHcCCCEEEeCCCCC----C---CCHHHHHHHHH
Confidence 345566677787764221111 112 1245677788888888877333454332 1 122 2
Q ss_pred HHHHHHHHHHhcCCeEEEeecc
Q 022752 234 KVSSFQKILRGSYNIRTTVRKQ 255 (292)
Q Consensus 234 ~l~~~~~~l~~~~g~~v~ir~~ 255 (292)
.+.++.+.++ ++|+.+.+.+-
T Consensus 151 ~l~~l~~~a~-~~Gv~l~lEn~ 171 (305)
T 3obe_A 151 IFNRAGEITK-KAGILWGYHNH 171 (305)
T ss_dssp HHHHHHHHHH-TTTCEEEEECC
T ss_pred HHHHHHHHHH-HcCCEEEEecC
Confidence 3334445555 78998877653
No 90
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=24.61 E-value=58 Score=27.29 Aligned_cols=51 Identities=14% Similarity=0.024 Sum_probs=33.4
Q ss_pred HHHHHHHH-HhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 022752 65 GEIVEQLV-HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 124 (292)
Q Consensus 65 eei~~~i~-~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~ 124 (292)
+++.+.+. +... +-+.+.+++ |+|+++ ....++++.+++.| ..+.+...=+
T Consensus 64 ~~~~~~i~~~~~~--g~~V~~l~~-GDP~i~-~~~~~l~~~l~~~g-----i~veviPGiS 115 (265)
T 2z6r_A 64 ELNFENIVLPLAK--ENDVAFLTP-GDPLVA-TTHAELRIRAKRAG-----VESYVIHAPS 115 (265)
T ss_dssp HHHHHHHTHHHHT--TSCEEEEES-BCTTSS-SSTHHHHHHHHHTT-----CCEEEECCCC
T ss_pred HHHHHHHHHHHhC--CCcEEEEEC-CCCcCC-CCHHHHHHHHHHCC-----CcEEEECChh
Confidence 45555555 4333 345677788 999996 65667888888776 5577665433
No 91
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=24.51 E-value=51 Score=24.64 Aligned_cols=72 Identities=7% Similarity=0.029 Sum_probs=40.6
Q ss_pred hhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEE-EEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEE
Q 022752 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV-NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 251 (292)
Q Consensus 177 ~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v-~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ 251 (292)
+.|..+....++.-+..|...-+.++.+.|.+.++++ .+..+. .. ....-....+..+++.+.|. +.|+++.
T Consensus 64 ~~G~~v~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~-~~~~~~i~~~d~~~A~~~L~-~~g~~v~ 136 (144)
T 2f06_A 64 DNHFAVNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NN-NVANVVIRPSNMDKCIEVLK-EKKVDLL 136 (144)
T ss_dssp HTTCCEEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ET-TEEEEEEEESCHHHHHHHHH-HTTCEEE
T ss_pred HcCCeEeeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cC-CcEEEEEEeCCHHHHHHHHH-HcCCEEe
Confidence 3344443332332233455667889999999988886 555552 11 11111112246667788888 6888874
No 92
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=24.19 E-value=87 Score=29.62 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCC----------CcHHHHHHHHHHHHhcCCeEEEee
Q 022752 197 QHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRT----------SSDDKVSSFQKILRGSYNIRTTVR 253 (292)
Q Consensus 197 ~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~----------~~~e~l~~~~~~l~~~~g~~v~ir 253 (292)
..+.+-+++|+++|+. |.+.|..+......|.+ -+.+++.++.+.+. +.|+.|.+-
T Consensus 173 ~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H-~~Gi~VilD 239 (585)
T 1wzl_A 173 KGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAH-RRGIKIILD 239 (585)
T ss_dssp HHHHHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHH-TTTCEEEEE
T ss_pred HHHHHHhHHHHHcCCCEEEECCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHH-HCCCEEEEE
Confidence 3344434777777776 77766543321111211 25788888888888 789988654
No 93
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=23.67 E-value=74 Score=23.87 Aligned_cols=65 Identities=14% Similarity=0.279 Sum_probs=31.7
Q ss_pred CceEEEEEcCCCCCcCCcCcCCC-----CCCCc---CCC-CHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHH
Q 022752 32 PRSTLCISSQVGCKMGCNFCATG-----TMGFK---SNL-SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALV 99 (292)
Q Consensus 32 ~r~~l~is~t~gCNl~C~yC~~~-----~~~~~---~~~-~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ 99 (292)
.++++|...+..+ -.|.||... ..+.. ..+ ...++.+.+.+......+. .+|.+ |+..--++.+.
T Consensus 35 ~~Vvvy~ks~~~~-~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP-~VfI~-G~~iGG~d~l~ 108 (135)
T 2wci_A 35 NPILLYMKGSPKL-PSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFP-QLWVD-GELVGGCDIVI 108 (135)
T ss_dssp CSEEEEESBCSSS-BSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSC-EEEET-TEEEESHHHHH
T ss_pred CCEEEEEEecCCC-CCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcC-EEEEC-CEEEEChHHHH
Confidence 3577877555564 479999762 11110 111 1134445554432222233 44667 77666555443
No 94
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=23.20 E-value=2.9e+02 Score=22.19 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHHHHHHHHhcC
Q 022752 168 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 246 (292)
Q Consensus 168 i~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~~~~~l~~~~ 246 (292)
++.+++.++++|..+..-.... +.+.+.+++.++.++.+|.. +.+. |. .+.+..+.+.++ ++
T Consensus 65 ~~~~~~~l~~~gl~i~~~~~~~---~~~~~~~~~~i~~A~~lGa~~v~~~---~~----------~~~~~~l~~~a~-~~ 127 (262)
T 3p6l_A 65 QKEIKELAASKGIKIVGTGVYV---AEKSSDWEKMFKFAKAMDLEFITCE---PA----------LSDWDLVEKLSK-QY 127 (262)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEC---CSSTTHHHHHHHHHHHTTCSEEEEC---CC----------GGGHHHHHHHHH-HH
T ss_pred HHHHHHHHHHcCCeEEEEeccC---CccHHHHHHHHHHHHHcCCCEEEec---CC----------HHHHHHHHHHHH-Hh
Confidence 3445566667777655433322 23445677777777777765 3332 21 123445556666 56
Q ss_pred CeEEEeecc
Q 022752 247 NIRTTVRKQ 255 (292)
Q Consensus 247 g~~v~ir~~ 255 (292)
|+.+.+.+.
T Consensus 128 gv~l~~En~ 136 (262)
T 3p6l_A 128 NIKISVHNH 136 (262)
T ss_dssp TCEEEEECC
T ss_pred CCEEEEEeC
Confidence 776665554
No 95
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=23.09 E-value=1e+02 Score=27.83 Aligned_cols=58 Identities=10% Similarity=0.050 Sum_probs=37.2
Q ss_pred hHHHHH-HHHHHHhhCCcE-EEEEecCCCCCC----CCc-----CC----CcHHHHHHHHHHHHhcCCeEEEee
Q 022752 195 EEQHAH-QLGKLLETFQVV-VNLIPFNPIGSV----SQF-----RT----SSDDKVSSFQKILRGSYNIRTTVR 253 (292)
Q Consensus 195 ~~~~l~-~l~~~l~~~~~~-v~l~p~~p~~~~----~~~-----~~----~~~e~l~~~~~~l~~~~g~~v~ir 253 (292)
+...+. ++.++|+++|+. |.+.|..+.... ..| .. =+.+++.++.+.+. +.|+.|.+-
T Consensus 12 ~~~gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~y~idp~~Gt~~dfk~Lv~~aH-~~Gi~VilD 84 (448)
T 1g94_A 12 NWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCS-AAGVDIYVD 84 (448)
T ss_dssp CHHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHH-HTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCcccccccccccCCCCCCHHHHHHHHHHHH-HCCCEEEEE
Confidence 344454 456788888887 888886654211 122 11 15788888888888 789987543
No 96
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=22.53 E-value=73 Score=21.98 Aligned_cols=56 Identities=9% Similarity=0.198 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
.++.+++...+........-..|.+.+ +.-..|..+.+++..+++.|+ .++.+.|.
T Consensus 38 ~v~~~~L~~~l~~~~~~~~~~~V~I~a--D~~~~y~~vv~vmd~l~~aG~----~~v~l~t~ 93 (99)
T 2pfu_A 38 PVTDETMITALNALTEGKKDTTIFFRA--DKTVDYETLMKVMDTLHQAGY----LKIGLVGE 93 (99)
T ss_dssp EECSSSHHHHHHHHSSSCCSSCEEEEE--CTTCCHHHHHHHHHHHHHTCC----CCEECTTC
T ss_pred ecCHHHHHHHHHHHHhcCCCceEEEEc--CCCCCHHHHHHHHHHHHHcCC----CeEEEEec
Confidence 345566666666553321224577776 677778999999999999884 46776654
No 97
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=22.35 E-value=3.8e+02 Score=23.18 Aligned_cols=130 Identities=8% Similarity=0.012 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Ccc-ccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--HHHHhhhC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GEP-LNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSDL 135 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GEP-ll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~--~~~l~~~~ 135 (292)
.++.+.+.+.+...... ++++|.+.|. ||- +|..+.-.++++.+.+. +=+++ +...+.+|.+... ..+.++..
T Consensus 51 ~iD~~~l~~lv~~li~~-Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvp-ViaGvg~~st~eai~la~~A~~~ 128 (332)
T 2r8w_A 51 RVDIEAFSALIARLDAA-EVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRT-LMAGIGALRTDEAVALAKDAEAA 128 (332)
T ss_dssp CBCHHHHHHHHHHHHHH-TCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSE-EEEEECCSSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEecCCCCHHHHHHHHHHHHhc
Q ss_pred CCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEE-EEEEeCCCCChHHHHHHHHH
Q 022752 136 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLGK 204 (292)
Q Consensus 136 ~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i-~~vl~~g~nd~~~~l~~l~~ 204 (292)
..+-.+.+ .|.-.+.+-+.+++..+..++..+.++.+ ++.-..|++-+.+.+.+|++
T Consensus 129 -Gadavlv~-----------~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~ 186 (332)
T 2r8w_A 129 -GADALLLA-----------PVSYTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAY 186 (332)
T ss_dssp -TCSEEEEC-----------CCCSSCCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHHT
T ss_pred -CCCEEEEC-----------CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHc
No 98
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=22.33 E-value=35 Score=29.32 Aligned_cols=39 Identities=8% Similarity=-0.033 Sum_probs=28.6
Q ss_pred CcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 022752 79 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 124 (292)
Q Consensus 79 ~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TNG~ 124 (292)
+-+.+.+++ |+|++. ....++++.+++.| ..+.+...-+
T Consensus 83 g~~Vv~L~~-GDP~v~-g~~~~l~~~l~~~g-----i~veviPGiS 121 (294)
T 1wde_A 83 DAVVAVVTA-GDPMVA-TTHSSLAAEALEAG-----VAVRYIPGVS 121 (294)
T ss_dssp CCEEEEEES-BCTTSS-SSHHHHHHHHHHTT-----CEEEEECCCC
T ss_pred CCCEEEEeC-CCCccc-cCHHHHHHHHHHCC-----CCEEEECCHh
Confidence 445677888 999996 66677888888777 5677775543
No 99
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=22.08 E-value=45 Score=23.23 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhc-cCCcceEEEecCCccccCHHHHHHHHHHHhC
Q 022752 65 GEIVEQLVHASR-LSNIRNVVFMGMGEPLNNYAALVEAVRIMTG 107 (292)
Q Consensus 65 eei~~~i~~~~~-~~~~~~I~fsG~GEPll~~~~i~ell~~~~~ 107 (292)
.+..+.+.+... ...+..|.|.. |..+.+++ ..++.+.+.+
T Consensus 40 ~~~~~~~~~~~~G~~tVP~I~i~D-g~~l~~~~-~~el~~~L~e 81 (92)
T 2lqo_A 40 RAAAEFVGSVNGGNRTVPTVKFAD-GSTLTNPS-ADEVKAKLVK 81 (92)
T ss_dssp HHHHHHHHHHSSSSSCSCEEEETT-SCEEESCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCEeCEEEEeC-CEEEeCCC-HHHHHHHHHH
Confidence 344455554321 12355666655 88877643 3344444443
No 100
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=21.25 E-value=2.5e+02 Score=20.60 Aligned_cols=35 Identities=6% Similarity=-0.023 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhHHHHhhhC
Q 022752 96 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL 135 (292)
Q Consensus 96 ~~i~ell~~~~~~g~~~~~~~i~l~TNG~~~~~~~l~~~~ 135 (292)
+...++++.+++.| ..+.+.||+.......+++..
T Consensus 39 ~~~~~~l~~l~~~g-----~~~~i~T~~~~~~~~~~l~~~ 73 (162)
T 2p9j_A 39 VLDGIGIKLLQKMG-----ITLAVISGRDSAPLITRLKEL 73 (162)
T ss_dssp HHHHHHHHHHHTTT-----CEEEEEESCCCHHHHHHHHHT
T ss_pred ccHHHHHHHHHHCC-----CEEEEEeCCCcHHHHHHHHHc
Confidence 34568999999988 789999998655455555544
No 101
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=21.15 E-value=64 Score=29.62 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHHhcCCeEEEee
Q 022752 231 SDDKVSSFQKILRGSYNIRTTVR 253 (292)
Q Consensus 231 ~~e~l~~~~~~l~~~~g~~v~ir 253 (292)
+.+++.++.+.+. +.|+.|.+-
T Consensus 101 t~~df~~Lv~~aH-~~Gi~VilD 122 (488)
T 2wc7_A 101 GNEAFKELLDAAH-QRNIKVVLD 122 (488)
T ss_dssp HHHHHHHHHHHHH-HTTCEEEEE
T ss_pred CHHHHHHHHHHHH-HCCCEEEEE
Confidence 4677888888888 789987544
No 102
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=20.80 E-value=3.2e+02 Score=23.24 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCcHHHHHH-HHHHHHhcCCeEEEeec
Q 022752 196 EQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSS-FQKILRGSYNIRTTVRK 254 (292)
Q Consensus 196 ~~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~~~~~~~~e~l~~-~~~~l~~~~g~~v~ir~ 254 (292)
..+..++++.+.+.|+. +-++ .|. |..++++.+.. |+++++ ..++++.+=+
T Consensus 93 t~~ai~la~~A~~~Gadavlv~--~P~-----y~~~s~~~l~~~f~~va~-a~~lPiilYn 145 (301)
T 1xky_A 93 THASIDLTKKATEVGVDAVMLV--APY-----YNKPSQEGMYQHFKAIAE-STPLPVMLYN 145 (301)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEE--CCC-----SSCCCHHHHHHHHHHHHH-TCSSCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEc--CCC-----CCCCCHHHHHHHHHHHHH-hcCCCEEEEe
Confidence 35566777777777776 3332 222 11235555444 444444 5566665443
No 103
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=20.55 E-value=3.9e+02 Score=22.57 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhCC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL 108 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~~ 108 (292)
.++.+.+.+.+..... .++++|.+.|. || ++|..+.-.++++.+.+.
T Consensus 16 ~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~ 64 (293)
T 1w3i_A 16 RIDKEKLKIHAENLIR-KGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDV 64 (293)
T ss_dssp SBCHHHHHHHHHHHHH-TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 4555555555554443 47899988875 78 778887788999998876
No 104
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=20.52 E-value=1.3e+02 Score=26.68 Aligned_cols=55 Identities=13% Similarity=0.018 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhCCcE-EEEEecCCCCCCC-----CcCCC------cHHHHHHHHHHHHhcCCeEEEe
Q 022752 197 QHAHQLGKLLETFQVV-VNLIPFNPIGSVS-----QFRTS------SDDKVSSFQKILRGSYNIRTTV 252 (292)
Q Consensus 197 ~~l~~l~~~l~~~~~~-v~l~p~~p~~~~~-----~~~~~------~~e~l~~~~~~l~~~~g~~v~i 252 (292)
..+.+-++.|+++|+. |.+.|..+..... ++..+ +.+++.++.+.+. +.|+.|.+
T Consensus 21 ~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h-~~Gi~Vil 87 (405)
T 1ht6_A 21 NMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALH-GKGVQAIA 87 (405)
T ss_dssp HHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHH-HTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHH-HCCCEEEE
Confidence 4444445677777776 7777765532111 11111 4678888888888 78998754
No 105
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=20.32 E-value=4e+02 Score=22.66 Aligned_cols=126 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Cc-cccCHHHHHHHHHHHhCC--CCCCCCCeEEEEcCCchhh----HHHHh
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL--PFQVSPKRITVSTVGIVHA----INKFH 132 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~ell~~~~~~--g~~~~~~~i~l~TNG~~~~----~~~l~ 132 (292)
.++.+.+.+.+...... ++++|.+.|. || ++|..+.-.++++.+.+. | ...+...+.+.... ..+.+
T Consensus 32 ~iD~~~l~~lv~~li~~-Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~g----rvpviaGvg~~~t~~ai~la~~a 106 (304)
T 3l21_A 32 SLDTATAARLANHLVDQ-GCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGD----RARVIAGAGTYDTAHSIRLAKAC 106 (304)
T ss_dssp CBCHHHHHHHHHHHHHT-TCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT----TSEEEEECCCSCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHc-CCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCC----CCeEEEeCCCCCHHHHHHHHHHH
Q ss_pred hhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCe-EEEEEEEeCCCCChHHHHHHHH
Q 022752 133 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLG 203 (292)
Q Consensus 133 ~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~-v~i~~vl~~g~nd~~~~l~~l~ 203 (292)
+.. ..+-.+.+ .|.-.+.+-+.+.+..+..++..+.+ +..++.-..|++-+.+.+.+|+
T Consensus 107 ~~~-Gadavlv~-----------~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 166 (304)
T 3l21_A 107 AAE-GAHGLLVV-----------TPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALA 166 (304)
T ss_dssp HHH-TCSEEEEE-----------CCCSSCCCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred HHc-CCCEEEEC-----------CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
No 106
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=20.08 E-value=1.6e+02 Score=24.82 Aligned_cols=51 Identities=8% Similarity=0.083 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCcHHH-------HHHHHHHHHhcCCeE--EEeec
Q 022752 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK-------VSSFQKILRGSYNIR--TTVRK 254 (292)
Q Consensus 196 ~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~~e~-------l~~~~~~l~~~~g~~--v~ir~ 254 (292)
.+.+++.+++++.+|+..-.++..|. . .+.+. +.++.+.++ ++|+. +.+.+
T Consensus 107 ~~~~~~~i~~A~~lG~~~v~~~~~~~---~----~~~~~~~~~~~~l~~l~~~a~-~~Gv~~~l~~En 166 (303)
T 3l23_A 107 MEYWKATAADHAKLGCKYLIQPMMPT---I----TTHDEAKLVCDIFNQASDVIK-AEGIATGFGYHN 166 (303)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECSCCC---C----CSHHHHHHHHHHHHHHHHHHH-HTTCTTCEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCC---C----CCHHHHHHHHHHHHHHHHHHH-HCCCcceEEEcc
Confidence 45677888888889987334443322 1 22333 333444555 78988 77654
No 107
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=20.06 E-value=87 Score=28.70 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 022752 62 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 122 (292)
Q Consensus 62 ~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~~~~g~~~~~~~i~l~TN 122 (292)
...+++.+.+.+.... +-+.+.+.+ |+|+++ ..-.++++.+++.| ..+.+...
T Consensus 277 ~~~~~i~~~l~~~~~~-G~~Vv~L~~-GDP~i~-g~g~~l~~~l~~~g-----i~v~vvPG 329 (457)
T 1pjq_A 277 VPQEEINQILLREAQK-GKRVVRLKG-GDPFIF-GRGGEELETLCHAG-----IPFSVVPG 329 (457)
T ss_dssp CTTHHHHHHHHHHHHT-TCEEEEEES-BCTTTS-SSHHHHHTTTTTTT-----CCEEEECC
T ss_pred CCHHHHHHHHHHHHHC-CCcEEEEeC-CCCCcc-CCHHHHHHHHHHCC-----CCEEEeCC
Confidence 4456777777664432 345666788 999995 66678888888877 56776654
No 108
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=20.02 E-value=4e+02 Score=22.57 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHhhccCCcceEEEecC-Ccc-ccCHHHHHHHHHHHhC
Q 022752 61 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GEP-LNNYAALVEAVRIMTG 107 (292)
Q Consensus 61 ~~~~eei~~~i~~~~~~~~~~~I~fsG~-GEP-ll~~~~i~ell~~~~~ 107 (292)
.++.+.+.+.+..... .++++|.+.|. ||- +|..+.-.++++.+.+
T Consensus 29 ~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~ 76 (301)
T 1xky_A 29 NIDFAKTTKLVNYLID-NGTTAIVVGGTTGESPTLTSEEKVALYRHVVS 76 (301)
T ss_dssp SBCHHHHHHHHHHHHH-TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHH
Confidence 4555555555554443 47899988875 775 5666655566666554
Done!