BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022753
(292 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14197|YDQ4_SCHPO Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
Length = 452
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 24/168 (14%)
Query: 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWF 74
L+V+++ G VLA + L +++L Y F P L+ + + + LI L
Sbjct: 24 LEVIVIALGGYVLA--KKGFLPRDAQKVISSLNVYFFTPCLVFEKVGNGLNLKMLIDLSL 81
Query: 75 MPV--------NILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPA 126
+PV +IL+SFL L K+ R P + C + N +L L +V +
Sbjct: 82 LPVFYVIISAASILISFL--------LAKLFRLTPRQRNFATACITFQNSNSLPLALVSS 133
Query: 127 VCEESNS------PFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVM 168
+ P +S G Y + +G W+Y Y ++
Sbjct: 134 LATTVKDLLWDKIPDDTPDKVASRGIMYLLIFSQLGQALRWSYGYRIL 181
>sp|P42432|NASA_BACSU Nitrate transporter OS=Bacillus subtilis (strain 168) GN=nasA PE=2
SV=2
Length = 401
Score = 34.7 bits (78), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 4 LDLFEVALMPILKVLLVTALGLVLAI--DRIDLLGHSVTHSLNNLVFYVFNPALIGSNLA 61
L FE L+ + +L + ++L I DRI G T + LV + P L G
Sbjct: 45 LSPFEKGLVVAVPILSGSVFRIILGILTDRI---GPKKTAVIGMLVTMI--PLLWG---- 95
Query: 62 ETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRT-PPHLQGLVIGCCSAGNMGNLL 120
T +SL L+ + ILL + G++ A L +R PPHLQGL +G AGN G L
Sbjct: 96 -TFGGRSLTELY--AIGILLG-VAGASFAVALPMASRWYPPHLQGLAMGIAGAGNSGTLF 151
Query: 121 LIIV-PAVCEE 130
+ P + E+
Sbjct: 152 ATLFGPRLAEQ 162
>sp|Q2KIV1|S22A9_BOVIN Solute carrier family 22 member 9 OS=Bos taurus GN=SLC22A9 PE=2
SV=1
Length = 552
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 85 IGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDT 138
IG+ALA +L+ +T PHL ++ G CS +G L +VP + E N P D+
Sbjct: 478 IGAALAPLLMILTVYSPHLPWIIYGVCSI--LGGL---VVPLLPETRNKPLPDS 526
>sp|Q8TK19|ACKA_METAC Acetate kinase OS=Methanosarcina acetivorans (strain ATCC 35395 /
DSM 2834 / JCM 12185 / C2A) GN=ackA PE=3 SV=1
Length = 408
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 8 EVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHS 42
+VAL ++K L + LG++ ++D I+ +GH V H
Sbjct: 61 KVALEEVVKALTDSELGVIKSMDEINAVGHRVVHG 95
>sp|Q5E9N5|CLPB_BOVIN Caseinolytic peptidase B protein homolog OS=Bos taurus GN=CLPB PE=2
SV=1
Length = 677
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 193 GESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRINKFTEKIDL 252
G + I +E S K LL RSP+ S QAE R K R +DK + T K+D+
Sbjct: 615 GGCTLRITVEDSDKQLL-----RSPELSSSQAERRPPKLRLEIIDK-----DSKTHKLDI 664
Query: 253 KMIFAPSTIAAVL 265
+ P + L
Sbjct: 665 QAPLHPEKVCHTL 677
>sp|Q8WHL6|MATK_LEMGI Maturase K OS=Lemna gibba GN=matK PE=3 SV=1
Length = 512
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 133 SPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISS 192
S F + S YG Y+SL + I I+ ++ S+ +K G NK+ +I
Sbjct: 42 STFNEPPEISGYGNKYSSLLVKRLIIRIYQQNSFLYSVNNSKQNRFVGHNKNYYYKMICE 101
Query: 193 GESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRINKFTEKIDL 252
G S I +E L SS + + + + Q RS S FPFL+ +N ++ +
Sbjct: 102 GFS---IVVEIPFSLRLVSSIKETKEIMKFQ-NLRSIHSLFPFLEDKFSHLNSVSDIV-- 155
Query: 253 KMIFAPSTIAAVLCLFECLLQ 273
I P + +L + +C +Q
Sbjct: 156 --IPYPIHLEILLQILQCWIQ 174
>sp|Q8WHL4|MATK_LEMTR Maturase K OS=Lemna trisulca GN=matK PE=3 SV=1
Length = 512
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 133 SPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISS 192
S F + S YG Y+SL + I+ ++ S+ +K G NK+ +IS
Sbjct: 42 STFNEPPEISGYGNKYSSLLVKRLITRIYQQNSFIYSVNNSKQNRFVGHNKNFYYKMISE 101
Query: 193 G-----ESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRINKFT 247
G E ++ L SSRK +++ SQ RS S FPFL+ +N +
Sbjct: 102 GFAIVVEIPFSLRLVSSRK------EKKEITKSQ---NLRSIHSLFPFLEDKFSHLNYVS 152
Query: 248 EKIDLKMIFAPSTIAAVLCLFECLLQ 273
+ +I P + ++ + +C +Q
Sbjct: 153 D----ILIPYPVHLEILVQILQCWIQ 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,471,604
Number of Sequences: 539616
Number of extensions: 3846864
Number of successful extensions: 12897
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 12889
Number of HSP's gapped (non-prelim): 20
length of query: 292
length of database: 191,569,459
effective HSP length: 116
effective length of query: 176
effective length of database: 128,974,003
effective search space: 22699424528
effective search space used: 22699424528
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)