Query 022753
Match_columns 292
No_of_seqs 203 out of 495
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:53:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 1.9E-65 4.1E-70 482.2 11.7 269 1-287 2-277 (408)
2 PF03547 Mem_trans: Membrane t 100.0 3.8E-33 8.2E-38 267.2 22.0 257 9-281 1-268 (385)
3 COG0679 Predicted permeases [G 99.8 1.7E-19 3.6E-24 170.4 17.1 148 7-171 2-150 (311)
4 TIGR00946 2a69 he Auxin Efflux 99.8 9.4E-19 2E-23 165.2 15.4 151 6-169 2-155 (321)
5 PRK09903 putative transporter 99.7 8.1E-17 1.8E-21 151.9 17.8 146 11-170 6-152 (314)
6 TIGR00841 bass bile acid trans 96.3 0.12 2.6E-06 48.4 14.1 134 14-164 140-276 (286)
7 TIGR00832 acr3 arsenical-resis 90.2 1.9 4E-05 41.5 9.1 105 15-122 182-296 (328)
8 COG0385 Predicted Na+-dependen 89.1 2.2 4.9E-05 41.0 8.7 101 15-122 168-273 (319)
9 TIGR00783 ccs citrate carrier 87.2 2.7 5.9E-05 40.9 8.0 101 17-120 207-315 (347)
10 PF05684 DUF819: Protein of un 86.6 11 0.00024 37.0 12.1 134 15-167 241-375 (378)
11 PF13593 DUF4137: SBF-like CPA 84.8 17 0.00036 34.7 12.1 111 14-129 164-281 (313)
12 PF05684 DUF819: Protein of un 76.6 9.2 0.0002 37.6 7.3 86 16-104 27-116 (378)
13 PF03812 KdgT: 2-keto-3-deoxyg 70.8 15 0.00033 35.3 7.0 108 11-126 168-276 (314)
14 PRK12460 2-keto-3-deoxyglucona 70.3 15 0.00033 35.3 6.9 103 15-126 167-270 (312)
15 KOG1650 Predicted K+/H+-antipo 64.4 41 0.00089 36.2 9.5 90 31-123 295-384 (769)
16 TIGR00807 malonate_madL malona 62.1 77 0.0017 26.4 8.6 80 15-98 38-117 (125)
17 PRK05274 2-keto-3-deoxyglucona 59.7 29 0.00062 33.5 6.7 104 15-126 174-278 (326)
18 TIGR00793 kdgT 2-keto-3-deoxyg 54.6 35 0.00077 32.8 6.2 107 12-126 169-276 (314)
19 TIGR03802 Asp_Ala_antiprt aspa 51.3 43 0.00093 34.6 6.8 114 10-128 8-141 (562)
20 PRK05326 potassium/proton anti 50.5 1E+02 0.0022 31.7 9.3 102 17-124 247-350 (562)
21 PF03817 MadL: Malonate transp 49.6 1.5E+02 0.0032 24.8 8.3 80 15-98 38-117 (125)
22 PF03601 Cons_hypoth698: Conse 49.5 73 0.0016 30.4 7.6 137 16-174 28-175 (305)
23 PRK03818 putative transporter; 48.4 2.9E+02 0.0063 28.5 12.3 85 35-122 54-139 (552)
24 PRK11339 abgT putative aminobe 46.9 79 0.0017 32.5 7.7 48 15-63 91-138 (508)
25 PRK04972 putative transporter; 46.3 1.8E+02 0.0039 30.1 10.4 137 12-156 12-171 (558)
26 TIGR00831 a_cpa1 Na+/H+ antipo 42.8 1.4E+02 0.003 30.5 8.9 53 17-74 25-77 (525)
27 PF06305 DUF1049: Protein of u 42.6 40 0.00086 24.2 3.7 25 73-97 18-42 (68)
28 PF03956 DUF340: Membrane prot 41.8 49 0.0011 29.4 4.8 78 20-100 4-83 (191)
29 PF03390 2HCT: 2-hydroxycarbox 41.6 96 0.0021 31.1 7.2 90 30-119 285-381 (414)
30 PF03390 2HCT: 2-hydroxycarbox 41.6 3.8E+02 0.0083 26.9 11.9 128 18-154 63-200 (414)
31 PLN03159 cation/H(+) antiporte 39.9 3E+02 0.0066 29.9 11.3 66 37-103 313-381 (832)
32 PF06295 DUF1043: Protein of u 38.3 28 0.00061 28.9 2.6 22 79-100 2-23 (128)
33 COG3763 Uncharacterized protei 37.5 58 0.0012 24.6 3.8 25 71-95 2-26 (71)
34 PRK01844 hypothetical protein; 36.8 59 0.0013 24.7 3.8 25 72-96 3-27 (72)
35 TIGR00840 b_cpa1 sodium/hydrog 35.8 1.8E+02 0.0039 30.2 8.5 44 43-87 64-108 (559)
36 TIGR03082 Gneg_AbrB_dup membra 34.5 2.8E+02 0.0062 23.4 9.1 48 55-102 55-106 (156)
37 COG4132 ABC-type uncharacteriz 34.2 34 0.00074 31.7 2.6 39 251-289 45-106 (282)
38 COG1294 AppB Cytochrome bd-typ 33.3 4.7E+02 0.01 25.6 12.6 80 9-88 168-252 (346)
39 PRK11677 hypothetical protein; 33.0 49 0.0011 28.0 3.2 21 79-99 6-26 (134)
40 PRK03562 glutathione-regulated 31.3 3.3E+02 0.0073 28.4 9.7 111 41-159 264-375 (621)
41 COG3493 CitS Na+/citrate sympo 31.3 5.4E+02 0.012 25.8 10.4 98 25-126 87-194 (438)
42 PF03977 OAD_beta: Na+-transpo 31.3 3.8E+02 0.0082 26.4 9.2 77 15-98 213-298 (360)
43 TIGR00844 c_cpa1 na(+)/h(+) an 31.1 7.4E+02 0.016 27.2 13.1 163 1-168 25-213 (810)
44 TIGR01995 PTS-II-ABC-beta PTS 30.3 5E+02 0.011 27.3 10.7 63 3-68 99-170 (610)
45 TIGR00773 NhaA Na+/H+ antiport 30.3 1.6E+02 0.0035 29.1 6.7 66 40-105 245-318 (373)
46 COG2855 Predicted membrane pro 29.8 4.4E+02 0.0096 25.7 9.5 107 58-174 77-184 (334)
47 TIGR00783 ccs citrate carrier 28.7 4.4E+02 0.0096 25.8 9.4 115 31-153 5-130 (347)
48 PRK14853 nhaA pH-dependent sod 28.0 2.3E+02 0.0051 28.4 7.5 70 37-106 259-338 (423)
49 TIGR00832 acr3 arsenical-resis 27.8 2.9E+02 0.0064 26.4 8.0 49 56-104 52-105 (328)
50 PF05145 AmoA: Putative ammoni 27.1 3.1E+02 0.0067 26.2 8.0 66 32-102 15-84 (318)
51 COG2978 AbgT Putative p-aminob 26.3 66 0.0014 32.8 3.3 63 19-83 96-158 (516)
52 COG4317 Uncharacterized protei 24.2 63 0.0014 25.2 2.1 28 254-281 24-55 (93)
53 PF03806 ABG_transport: AbgT p 23.9 7.3E+02 0.016 25.6 10.3 52 15-67 81-132 (502)
54 KOG4112 Signal peptidase subun 23.6 59 0.0013 26.0 1.9 21 260-280 33-54 (101)
55 PF10951 DUF2776: Protein of u 22.8 7.1E+02 0.015 24.2 11.4 147 11-172 11-180 (347)
56 COG3493 CitS Na+/citrate sympo 22.7 6E+02 0.013 25.5 9.0 92 19-112 295-391 (438)
57 PF07219 HemY_N: HemY protein 22.7 83 0.0018 25.0 2.7 36 71-106 15-50 (108)
58 PRK15083 PTS system mannitol-s 22.7 7.1E+02 0.015 26.2 10.3 64 3-68 13-77 (639)
59 KOG1965 Sodium/hydrogen exchan 22.1 1.5E+02 0.0032 31.0 5.0 83 15-98 42-152 (575)
60 PF04235 DUF418: Protein of un 21.6 3.5E+02 0.0075 22.6 6.5 33 31-63 3-36 (163)
61 PF00375 SDF: Sodium:dicarboxy 21.3 5.3E+02 0.011 25.0 8.5 82 15-100 3-96 (390)
62 COG5505 Predicted integral mem 21.2 4.6E+02 0.01 25.7 7.7 98 17-128 250-350 (384)
63 PF05552 TM_helix: Conserved T 21.0 1.7E+02 0.0038 20.1 3.8 33 66-98 8-40 (53)
64 COG5505 Predicted integral mem 21.0 8E+02 0.017 24.1 10.3 78 17-99 34-116 (384)
65 COG3105 Uncharacterized protei 20.8 1.2E+02 0.0026 25.7 3.3 22 78-99 10-31 (138)
66 COG0679 Predicted permeases [G 20.7 7.1E+02 0.015 23.4 10.4 90 17-109 170-261 (311)
67 PF13940 Ldr_toxin: Toxin Ldr, 20.7 91 0.002 20.3 2.0 20 252-271 11-30 (35)
68 PF06899 WzyE: WzyE protein; 20.4 1.5E+02 0.0032 29.9 4.4 34 30-63 143-176 (448)
69 KOG2262 Sexual differentiation 20.3 34 0.00075 36.3 0.0 96 66-171 438-535 (761)
70 COG3071 HemY Uncharacterized e 20.2 88 0.0019 31.1 2.8 37 71-107 40-76 (400)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.9e-65 Score=482.23 Aligned_cols=269 Identities=39% Similarity=0.656 Sum_probs=228.9
Q ss_pred CcHHHHHHHHH--HHHHHHHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHH
Q 022753 1 MEILDLFEVAL--MPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN 78 (292)
Q Consensus 1 m~~~~l~~~a~--~~vl~Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ipv~ 78 (292)
|++++++-.|. +|++||++++.+|+++|+|+.|++++|+||.+|++||++|+|||||+++|+++|.+++.+|||||+|
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 78999988888 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccceeeeeeccCCcchhHHHHHHhhhhcCCCCCCCchhhhhhhHHHHHHHHHHhhH
Q 022753 79 ILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAI 158 (292)
Q Consensus 79 ~~ls~~ig~~lg~lv~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~aLc~~~~~pfg~~~~c~~~g~aYv~l~~~~~~i 158 (292)
.++++++|.++||+++|++|+|+++||++++||+|||+||||+++++|+|+++++|||++|.|.+||++|++++|++|++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccc-cccCCCCCCccccccCCCCcc----ccccccCcCCCCCCCCCCCCCccchhhhhcccCCCC
Q 022753 159 YIWTYVYYVMSLYLNKSV-SDAGTNKDSRIHIISSGESST----NIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRF 233 (292)
Q Consensus 159 ~~Wt~g~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (292)
++|||+||++.++..++. ..+ +..+++..+..+ ++.|+++++++++.+.+|+ .....
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~------~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~en~------------~~~~~ 223 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALK------ESPVEALLESVPQPSVESDEDSTCKTLLLASKENR------------NNQVV 223 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCC------hhhhhhhhhccCCCCcccccccccccccccccccC------------CCcee
Confidence 999999998888753322 112 111212111111 0001112333333222221 01112
Q ss_pred chhhHHHHHHHHHhhhhhhhhhcChhHHHHHHHHHHhhhhhhhhhhccccchhh
Q 022753 234 PFLDKMRQRINKFTEKIDLKMIFAPSTIAAVLCLFECLLQFYATSVSDFSYFFK 287 (292)
Q Consensus 234 ~~~~k~~~~~~~~~~~~~l~~~~~Pptia~ilg~ivG~vp~l~~~~~~~~~f~~ 287 (292)
+.++|++++.+...+|.++|+++||||||+|+|+++|+|||||+++|..|+|++
T Consensus 224 g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~ 277 (408)
T KOG2722|consen 224 GREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLR 277 (408)
T ss_pred eccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHH
Confidence 467888888899999999999999999999999999999999999999999997
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=3.8e-33 Score=267.18 Aligned_cols=257 Identities=26% Similarity=0.362 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHH
Q 022753 9 VALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSA 88 (292)
Q Consensus 9 ~a~~~vl~Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ipv~~~ls~~ig~~ 88 (292)
+++++++++++++++||+++ |+|++++++++.+|++|+++++|||+|++++++.+.+++.++|++++..++.++++++
T Consensus 1 ~v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (385)
T PF03547_consen 1 TVFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLL 78 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 36789999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccceeeeeeccCCcchhHHHHHHhhhhcCCCCCCCchhhhhhhHHHHHHHHHHhhHHHHHHHHHHH
Q 022753 89 LAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVM 168 (292)
Q Consensus 89 lg~lv~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~aLc~~~~~pfg~~~~c~~~g~aYv~l~~~~~~i~~Wt~g~~ll 168 (292)
++|++.|++|.|+++++.+..+|+++|++++|++++.++|++ +|++|++++.+++.++.|++|+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-------------~~~~~~~~~~~~~~i~~~~~~~~l~ 145 (385)
T PF03547_consen 79 LGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-------------RGVAYAIIFDVVNNIILWSLGYFLL 145 (385)
T ss_pred HHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-------------hhhhhehHHHHhhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998765 8999999999999999999999999
Q ss_pred hccccccccccCCCCCCcccccc--CCCCccccccc--------cCcCCCCCCCCCCC-CCccchhhhhcccCCCCchhh
Q 022753 169 SLYLNKSVSDAGTNKDSRIHIIS--SGESSTNIFLE--------SSRKPLLHSSDRRS-PDDSQIQAETRSTKSRFPFLD 237 (292)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 237 (292)
+...++.+..+..+.+.+...+. ++++.....++ .+.+.+....+..+ ++.++. ...++.+.....+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 224 (385)
T PF03547_consen 146 ESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSV-STSPSPSNSTGAEQ 224 (385)
T ss_pred cccccccccccccccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhh-ccCCcccccchhhh
Confidence 87755543322101000000000 00000000000 00000000000000 000000 00000111123444
Q ss_pred HHHHHHHHHhhhhhhhhhcChhHHHHHHHHHHhhhhhhhhhhcc
Q 022753 238 KMRQRINKFTEKIDLKMIFAPSTIAAVLCLFECLLQFYATSVSD 281 (292)
Q Consensus 238 k~~~~~~~~~~~~~l~~~~~Pptia~ilg~ivG~vp~l~~~~~~ 281 (292)
+.++..+....+.-++.+++||++|+++|+++|++|+.+++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~ 268 (385)
T PF03547_consen 225 KSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP 268 (385)
T ss_pred hhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH
Confidence 55555555555555789999999999999999999999996665
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.83 E-value=1.7e-19 Score=170.43 Aligned_cols=148 Identities=22% Similarity=0.337 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHH
Q 022753 7 FEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIG 86 (292)
Q Consensus 7 ~~~a~~~vl~Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ipv~~~ls~~ig 86 (292)
+...+.+++++++++++||+++ |.|.++++..+.+|++|+|+++|||+|.+++++ +.+...++..+.+..+.+ ++.
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~-~~~~~~~~~~~~~~~~~~-~~~ 77 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATA-DLSGLADLGLIVASLVAT-LLA 77 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhC-CcchhhhHHHHHHHHHHH-HHH
Confidence 4567899999999999999999 999999999999999999999999999999998 555556666666666444 444
Q ss_pred HHHHHHH-HHHhcCCCCccceeeeeeccCCcchhHHHHHHhhhhcCCCCCCCchhhhhhhHHHHHHHHHHhhHHHHHHHH
Q 022753 87 SALAWIL-IKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVY 165 (292)
Q Consensus 87 ~~lg~lv-~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~aLc~~~~~pfg~~~~c~~~g~aYv~l~~~~~~i~~Wt~g~ 165 (292)
+++++++ .|..+.|+++++.+..+.+++|+|++|+++..+ .||+ +|++|+++|+.++.+..|++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~-------~~G~------~gl~~~~i~~~~~~~~~~~~g~ 144 (311)
T COG0679 78 FFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALS-------LFGE------KGLAYAVIFLIIGLFLMFTLGV 144 (311)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHH-------HcCc------chHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 455667778788999999999999999998888 5665 8999999999999999999999
Q ss_pred HHHhcc
Q 022753 166 YVMSLY 171 (292)
Q Consensus 166 ~ll~~~ 171 (292)
..+...
T Consensus 145 ~~l~~~ 150 (311)
T COG0679 145 ILLARS 150 (311)
T ss_pred HHHHHh
Confidence 988765
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.80 E-value=9.4e-19 Score=165.16 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcc-hhhhhhHHHHHHHHHH
Q 022753 6 LFEVALMPILKVLLVTALGLVL-AIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQ-SLISLWFMPVNILLSF 83 (292)
Q Consensus 6 l~~~a~~~vl~Vlli~~~G~~l-a~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~-~l~~lw~ipv~~~ls~ 83 (292)
+++..+..++++++++++||++ . |+|+++++..+.+|++++|+++||++|+++++. +.+ +....+...+....++
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTT-LADILQKSQSPVVLFLWGAF 78 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999 7 999999999999999999999999999999986 332 3444455555555777
Q ss_pred HHHHHHHHHHHH-HhcCCCCccceeeeeeccCCcchhHHHHHHhhhhcCCCCCCCchhhhhhhHHHHHHHHHHhhHHHHH
Q 022753 84 LIGSALAWILIK-ITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWT 162 (292)
Q Consensus 84 ~ig~~lg~lv~~-i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~aLc~~~~~pfg~~~~c~~~g~aYv~l~~~~~~i~~Wt 162 (292)
...++++|++.| .+|.|++.++....+++++|++++|++++.++.++++. ..+.|+..+...+.+..|+
T Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G~~~~----------~~~~~~~~~~~~~~~~~~~ 148 (321)
T TIGR00946 79 SGSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEEGA----------KILIAALFIDTGAVLMTIA 148 (321)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHhcccch----------hhhHHHHHHHhccchhHHH
Confidence 888999999999 88889999999999999999999999999997544221 1267888889999999999
Q ss_pred HHHHHHh
Q 022753 163 YVYYVMS 169 (292)
Q Consensus 163 ~g~~ll~ 169 (292)
+|+.+..
T Consensus 149 ~~~~~~~ 155 (321)
T TIGR00946 149 LGLFLVS 155 (321)
T ss_pred HHHHHhc
Confidence 9987653
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.74 E-value=8.1e-17 Score=151.92 Aligned_cols=146 Identities=13% Similarity=0.171 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHH
Q 022753 11 LMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALA 90 (292)
Q Consensus 11 ~~~vl~Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ipv~~~ls~~ig~~lg 90 (292)
+..++++++++++||++. |+|+++++..|.+|++++|+++||++|.++++. +.+++.+-|...+...++++++++++
T Consensus 6 ~~~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (314)
T PRK09903 6 IGDLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFS 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 345788899999999999 999999999999999999999999999999986 66776634556677778888899999
Q ss_pred HHHHH-HhcCCCCccceeeeeeccCCcchhHHHHHHhhhhcCCCCCCCchhhhhhhHHHHHHHHHHhhHHHHHHHHHHHh
Q 022753 91 WILIK-ITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMS 169 (292)
Q Consensus 91 ~lv~~-i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~aLc~~~~~pfg~~~~c~~~g~aYv~l~~~~~~i~~Wt~g~~ll~ 169 (292)
|++.| ..|.+++.++.....++++|+|++|+++++++.++++. .|+.|+.++. +..++.|++|..+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~~G~~~~----------~~~~~a~~~~-~~~~~~~~~g~~~~~ 151 (314)
T PRK09903 83 WFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVS----------TGLVVAIISI-IVNAITIPIGLYLLN 151 (314)
T ss_pred HHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHHcCchhh----------hhhHHHHHHH-HHHHHHHHHHHHHHc
Confidence 99876 56777777777777889999999999999996443211 1555555544 578889999998886
Q ss_pred c
Q 022753 170 L 170 (292)
Q Consensus 170 ~ 170 (292)
.
T Consensus 152 ~ 152 (314)
T PRK09903 152 P 152 (314)
T ss_pred c
Confidence 4
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.32 E-value=0.12 Score=48.45 Aligned_cols=134 Identities=12% Similarity=0.105 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChhHH--hHhhHHHHHHHhhHHHHHHhhccCCcchhh-hhhHHHHHHHHHHHHHHHHH
Q 022753 14 ILKVLLVTALGLVLAIDRIDLLGHSVT--HSLNNLVFYVFNPALIGSNLAETITYQSLI-SLWFMPVNILLSFLIGSALA 90 (292)
Q Consensus 14 vl~Vlli~~~G~~la~~r~gil~~~~~--k~LsklV~~vflP~LiF~~La~sit~~~l~-~lw~ipv~~~ls~~ig~~lg 90 (292)
...+++-.++|..+. |. .++-++ +.++++... .+=++++.-++.+ .+.+. +.|.+.+..++-.++++++|
T Consensus 140 ~~~v~vPl~lG~~~r--~~--~p~~~~~~~~~~~~s~~-~l~liv~~~~~~~--~~~i~~~~~~~~~~~~ll~~~~~~~g 212 (286)
T TIGR00841 140 LVAVLIPVSIGMLVK--HK--LPQIAKIILKVGLISVF-LLSVIIAVVGGIN--VENLATIGPLLLLVGILLPLAGFLLG 212 (286)
T ss_pred HHHHHHHHHHHHHHH--HH--hHHHHHHHHhCchHHHH-HHHHHHHHHHHhh--HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 566777788898776 32 122111 113333222 2224444444433 23332 23444445556778999999
Q ss_pred HHHHHHhcCCCCccceeeeeeccCCcchhHHHHHHhhhhcCCCCCCCchhhhhhhHHHHHHHHHHhhHHHHHHH
Q 022753 91 WILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYV 164 (292)
Q Consensus 91 ~lv~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~aLc~~~~~pfg~~~~c~~~g~aYv~l~~~~~~i~~Wt~g 164 (292)
|+++|.+|.|++.+..+...++..|++ +.+++..+.+ + ++...-...|..++...+.++-+-+.
T Consensus 213 ~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~f-------~--~~~a~~~~~~~v~~~~~~~~~a~~~~ 276 (286)
T TIGR00841 213 YLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLSF-------S--PEVAVPSAIFPLIYALFQLAFALLFL 276 (286)
T ss_pred HHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHhc-------C--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888889999988 7777656533 2 11222345566777777777665433
No 7
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=90.15 E-value=1.9 Score=41.46 Aligned_cols=105 Identities=12% Similarity=0.083 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhhccC-----CCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhh----hHHHHHHHHHHHH
Q 022753 15 LKVLLVTALGLVLAIDRID-----LLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL----WFMPVNILLSFLI 85 (292)
Q Consensus 15 l~Vlli~~~G~~la~~r~g-----il~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~l----w~ipv~~~ls~~i 85 (292)
..+++-..+|..+.+...+ +..+..++.++.+.. +++=..++...+.+ .+.+.+. +.+....++...+
T Consensus 182 ~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~--~~~i~~~~~~i~~~~~~v~l~~~~ 258 (328)
T TIGR00832 182 IYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQ--GETIIELPLDIALIAIPLLIYFYI 258 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHH--HHHHHhChHHHHHHHHHHHHHHHH
Confidence 3445556677766532121 222233344555444 23334455555544 3334333 3333344577889
Q ss_pred HHHHHHHHHHHhcCCCCccceeeeeeccCCcc-hhHHH
Q 022753 86 GSALAWILIKITRTPPHLQGLVIGCCSAGNMG-NLLLI 122 (292)
Q Consensus 86 g~~lg~lv~~i~~~p~~~~g~~i~~~~fgN~g-~LpL~ 122 (292)
++.+||+++|.+|.+++.+..+.-+++..|.+ .++++
T Consensus 259 ~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA 296 (328)
T TIGR00832 259 MFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVA 296 (328)
T ss_pred HHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHH
Confidence 99999999999999999999888888888864 34433
No 8
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=89.10 E-value=2.2 Score=41.02 Aligned_cols=101 Identities=21% Similarity=0.158 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHH---hHhhHHHHHHHhhHHHHHHhhccCCcchhhhhh-HHHHHHHHHHHHHHHHH
Q 022753 15 LKVLLVTALGLVLAIDRIDLLGHSVT---HSLNNLVFYVFNPALIGSNLAETITYQSLISLW-FMPVNILLSFLIGSALA 90 (292)
Q Consensus 15 l~Vlli~~~G~~la~~r~gil~~~~~---k~LsklV~~vflP~LiF~~La~sit~~~l~~lw-~ipv~~~ls~~ig~~lg 90 (292)
.++++-..+|-++.. ++++-.+ +.++. +-...+=+.++...+.+ .+++.+.. .+.+..++...+|+.+|
T Consensus 168 ~~vllP~~LG~~~r~----~~~~~~~~~~~~l~~-vs~~~illIv~~~~s~~--~~~~~~~~~~v~~~v~~~n~lg~~~g 240 (319)
T COG0385 168 LQVLLPFVLGQLLRP----LLPKWVERLKKALPP-VSVLSILLIVYAAFSAA--VENGIWSGLLIFVAVILHNLLGLLLG 240 (319)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677765552 2222222 22322 22344445555555554 33333322 34555668889999999
Q ss_pred HHHHHHhcCCCCccceeeeeeccCCcc-hhHHH
Q 022753 91 WILIKITRTPPHLQGLVIGCCSAGNMG-NLLLI 122 (292)
Q Consensus 91 ~lv~~i~~~p~~~~g~~i~~~~fgN~g-~LpL~ 122 (292)
|..+|.++.|++.+..+.-|++-.|.+ ..|++
T Consensus 241 y~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA 273 (319)
T COG0385 241 YFGARLLGFDKADEITIAIEGGMQNLGLGAALA 273 (319)
T ss_pred HHHHHHhCCChhheeeEEEeeccccHHHHHHHH
Confidence 999999999999999999999999976 44444
No 9
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=87.16 E-value=2.7 Score=40.93 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHhH---hhHHHHHHHhhHHHH-HHhhccCCcchhhhhh--HHHHHHHHHHHHHHHHH
Q 022753 17 VLLVTALGLVLAIDRIDLLGHSVTHS---LNNLVFYVFNPALIG-SNLAETITYQSLISLW--FMPVNILLSFLIGSALA 90 (292)
Q Consensus 17 Vlli~~~G~~la~~r~gil~~~~~k~---LsklV~~vflP~LiF-~~La~sit~~~l~~lw--~ipv~~~ls~~ig~~lg 90 (292)
-..++.+|.++. ..|++|++..+. ..|++...+++.+++ ..++.+ +++++.+.- +..+.++.+.+-..+.+
T Consensus 207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t-~l~~L~~a~t~~~vviiv~~Vlg~ii~s 283 (347)
T TIGR00783 207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYI-DLDDLVAALSWQFVVICLSVVVAMILGG 283 (347)
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccC-CHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence 445667787777 899999987654 555666667776666 455555 899988854 33333434444445667
Q ss_pred HHHHHHhcCCCCccceeee--eeccCCcchhH
Q 022753 91 WILIKITRTPPHLQGLVIG--CCSAGNMGNLL 120 (292)
Q Consensus 91 ~lv~~i~~~p~~~~g~~i~--~~~fgN~g~Lp 120 (292)
+++.|+++.=+-..+.+-+ ++..|-+|++.
T Consensus 284 ~lvGKllG~YPiE~aItagLC~~~~GGtGDva 315 (347)
T TIGR00783 284 AFLGKLMGMYPVESAITAGLCNSGMGGTGDVA 315 (347)
T ss_pred HHHHHHhCCChHHHHHHHhhhccCCCCCCcee
Confidence 7999999965555555432 34445566655
No 10
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=86.57 E-value=11 Score=36.99 Aligned_cols=134 Identities=19% Similarity=0.197 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCCh-hHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022753 15 LKVLLVTALGLVLAIDRIDLLGH-SVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWIL 93 (292)
Q Consensus 15 l~Vlli~~~G~~la~~r~gil~~-~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ipv~~~ls~~ig~~lg~lv 93 (292)
..++++..+|...+ ...+... .....+..+..++| |..++...++.++.+-..+.++.++-..+-.++-+++
T Consensus 241 ~~il~~tt~~l~~~--~~~~~~~l~g~~~lg~~lly~f-----fa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~~ 313 (378)
T PF05684_consen 241 WLILTVTTLGLATS--FPPFRKLLRGASELGTFLLYLF-----FAVIGASADISELLDAPSLFLFGFIILAIHLLLMLIL 313 (378)
T ss_pred HHHHHHHHHHHHHh--ccchhhcCCchHHHHHHHHHHH-----HHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777666 3222222 45556666666554 5778888889999984445555666667777888889
Q ss_pred HHHhcCCCCccceeeeeeccCCcchhHHHHHHhhhhcCCCCCCCchhhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 022753 94 IKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYV 167 (292)
Q Consensus 94 ~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~aLc~~~~~pfg~~~~c~~~g~aYv~l~~~~~~i~~Wt~g~~l 167 (292)
+|++|.|. ..+..++..|.|.-.-+ ++++..++ | +=..-|+.--.+.+++++.+-+..++.+
T Consensus 314 ~kl~k~~l----~~~~vAS~AnIGGpaTA--~a~A~a~~-~-----~Lv~pgvL~gvlGyaiGty~G~~va~~l 375 (378)
T PF05684_consen 314 GKLFKIDL----FELLVASNANIGGPATA--PAVAAAKG-P-----SLVPPGVLMGVLGYAIGTYLGLAVAQLL 375 (378)
T ss_pred HHHHCCCH----HHHHHHhhcccCCcchH--HHHHHhcC-C-----ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999884 44455788888887777 44444332 1 1234677777888888888877777654
No 11
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=84.85 E-value=17 Score=34.71 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChhH--HhHhhHHHHHHHhhHHHHHHhhccCCcc---hh--hhhhHHHHHHHHHHHHH
Q 022753 14 ILKVLLVTALGLVLAIDRIDLLGHSV--THSLNNLVFYVFNPALIGSNLAETITYQ---SL--ISLWFMPVNILLSFLIG 86 (292)
Q Consensus 14 vl~Vlli~~~G~~la~~r~gil~~~~--~k~LsklV~~vflP~LiF~~La~sit~~---~l--~~lw~ipv~~~ls~~ig 86 (292)
+..+++-..+|-.+. | ++++.. .|..-+.+-...+-.+++++...++.-+ ++ ..+..+.+..+.-..++
T Consensus 164 ~~~vllP~~~Gq~~r--~--~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (313)
T PF13593_consen 164 VLTVLLPLVLGQLLR--R--WVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVV 239 (313)
T ss_pred HHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHH
Confidence 345566666777555 2 223322 1223333455666677777776663322 22 22222333333455666
Q ss_pred HHHHHHHHHHhcCCCCccceeeeeeccCCcchhHHHHHHhhhh
Q 022753 87 SALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCE 129 (292)
Q Consensus 87 ~~lg~lv~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~aLc~ 129 (292)
+.++|...|.++.+++.+--+.- |+...+..+++++..++..
T Consensus 240 l~~~~~~~r~~~~~~~d~iA~~F-~gs~Ksl~~gvpl~~~lf~ 281 (313)
T PF13593_consen 240 LVLGWLAARLLGFSRPDRIAVLF-CGSQKSLALGVPLASILFP 281 (313)
T ss_pred HHHHHHHHhhcCCChhhEEEEEE-EcCcCcchhHHHHHHHHcc
Confidence 78899999999988887665554 5557888888888888654
No 12
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=76.60 E-value=9.2 Score=37.60 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHH----HHHHHHHHHHH
Q 022753 16 KVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNIL----LSFLIGSALAW 91 (292)
Q Consensus 16 ~Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ipv~~~----ls~~ig~~lg~ 91 (292)
.++++.+.|.+++ ..|+++.+....+-..+....+|.-++--+-+. ++.++.+...=++..+ +++++|..+++
T Consensus 27 ~~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~-Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~ 103 (378)
T PF05684_consen 27 GAVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSA-DLRRILRLGGRLLLAFLIGAVGTVIGAVVAF 103 (378)
T ss_pred HHHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHc-cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888 899995555566778888888888888777766 7777776655444443 55566666666
Q ss_pred HHHHHhcCCCCcc
Q 022753 92 ILIKITRTPPHLQ 104 (292)
Q Consensus 92 lv~~i~~~p~~~~ 104 (292)
.+.+..-.|..++
T Consensus 104 ~l~~~~l~~~~wk 116 (378)
T PF05684_consen 104 LLFGGFLGPEGWK 116 (378)
T ss_pred HHHhhcccchHHH
Confidence 5555442343333
No 13
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=70.77 E-value=15 Score=35.34 Aligned_cols=108 Identities=16% Similarity=0.153 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHH-HHHHHHHHHH
Q 022753 11 LMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNI-LLSFLIGSAL 89 (292)
Q Consensus 11 ~~~vl~Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ipv~~-~ls~~ig~~l 89 (292)
.++.+-.++-..+|.++. =+|+|.||.+++-+- +.+|-+-| .++..++++++.+-..--+.. +++.+++...
T Consensus 168 ~~~lv~~llP~iiG~iLG-----NLD~~~r~fl~~~~~-~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 168 WMSLVAALLPIIIGMILG-----NLDPDFRKFLAPGVP-ILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCHHHHHHHhcCCC-eeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 455666777778898777 679999999998765 55665554 688899999999987765554 3445566677
Q ss_pred HHHHHHHhcCCCCccceeeeeeccCCcchhHHHHHHh
Q 022753 90 AWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPA 126 (292)
Q Consensus 90 g~lv~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~a 126 (292)
.++.-|.++-.+..- ..-+.+..||....|-++-++
T Consensus 241 ~~~~dr~i~~~~g~a-G~A~sstAGnavatPaaiA~~ 276 (314)
T PF03812_consen 241 LYLADRLILKGNGVA-GAAISSTAGNAVATPAAIAAA 276 (314)
T ss_pred HHHHHHHHcCCCCce-eehHHhhhhhhhhhhHHHHHh
Confidence 777777753222222 334567889999999997665
No 14
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=70.33 E-value=15 Score=35.32 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHH-HHHHHHHHHHHHHHHHH
Q 022753 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMP-VNILLSFLIGSALAWIL 93 (292)
Q Consensus 15 l~Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ip-v~~~ls~~ig~~lg~lv 93 (292)
+..++-+.+|.++. . ++++.++.+.+=+-. .+|-. ...++-+++++++.+.++-. +..++...++..+++++
T Consensus 167 v~lilpILiGmilG--N---ld~~~~~~l~~Gi~f-~I~f~-~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i 239 (312)
T PRK12460 167 VAALLPLVLGMILG--N---LDPDMRKFLTKGGPL-LIPFF-AFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFA 239 (312)
T ss_pred HHHHHHHHHHHHHh--c---cchhhHHHHhccceE-eHHHH-HHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888777 2 566666666554332 34333 34588889999999886554 44556778889999999
Q ss_pred HHHhcCCCCccceeeeeeccCCcchhHHHHHHh
Q 022753 94 IKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPA 126 (292)
Q Consensus 94 ~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~a 126 (292)
.|.+|.+++... ...+..||..--|-++..+
T Consensus 240 ~rllg~~~~~g~--li~stAGnAIcgpAAVaAa 270 (312)
T PRK12460 240 DRLVGGTGIAGA--AASSTAGNAVATPLAIAAA 270 (312)
T ss_pred HHHhCCChhHHH--HHHHHhhHHHHHHHHHHHh
Confidence 999987765532 2334588988888877555
No 15
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=64.36 E-value=41 Score=36.24 Aligned_cols=90 Identities=14% Similarity=0.032 Sum_probs=59.2
Q ss_pred ccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccceeeee
Q 022753 31 RIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGC 110 (292)
Q Consensus 31 r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ipv~~~ls~~ig~~lg~lv~~i~~~p~~~~g~~i~~ 110 (292)
+-+-+...-.+.+..+++.+++|+.+...-.++ +...+.+|+..-..+.++...-++.....+..+|+|. |..+.+.
T Consensus 295 ~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~-di~~i~~~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~--~~~l~l~ 371 (769)
T KOG1650|consen 295 HGPPLGSALIEKLEDLVSGLLLPLYFAISGLKT-DISRINKWGALIRTILIFGAVKLLSTLGTSLYCKLPL--RDSLALG 371 (769)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhhccce-eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--hHHHHHH
Confidence 444444467778899999999999988887776 7777777666666665665666666667777889883 3443333
Q ss_pred eccCCcchhHHHH
Q 022753 111 CSAGNMGNLLLII 123 (292)
Q Consensus 111 ~~fgN~g~LpL~i 123 (292)
..+.+=|.+-+.+
T Consensus 372 ~lm~~kgl~el~~ 384 (769)
T KOG1650|consen 372 LLMSTKGLVELIV 384 (769)
T ss_pred HHHHhhhHHHHHH
Confidence 3444444444443
No 16
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=62.15 E-value=77 Score=26.43 Aligned_cols=80 Identities=9% Similarity=0.117 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022753 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILI 94 (292)
Q Consensus 15 l~Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ipv~~~ls~~ig~~lg~lv~ 94 (292)
+-.++++.+..++. |+|++++++.+.+..-. ....|-.+--.-.++ -..-+..-|...+..+.+..+|+++--++.
T Consensus 38 iAMlLLi~~~~~l~--k~G~l~~~te~Gi~FW~-aMYIPIVVAMAA~QN-Vv~Al~gG~~Allagi~av~~~~~~i~~l~ 113 (125)
T TIGR00807 38 IAMILLIISKELLA--KRGHLPQVTQFGVGFWS-AMYIPIVVAMAAGQN-VVAALSGGMLALLASVAALIVTVLVIRWIS 113 (125)
T ss_pred HHHHHHHHHHHHHH--HcCCCChhHHhHHHHHH-ccHhHHHHHHhhhch-hHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888898 99999999999986543 345565443333333 123333444444555566677777766777
Q ss_pred HHhc
Q 022753 95 KITR 98 (292)
Q Consensus 95 ~i~~ 98 (292)
|+-|
T Consensus 114 r~g~ 117 (125)
T TIGR00807 114 KSSY 117 (125)
T ss_pred HhCC
Confidence 7655
No 17
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=59.68 E-value=29 Score=33.54 Aligned_cols=104 Identities=15% Similarity=0.154 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhH-HHHHHHHHHHHHHHHHHHH
Q 022753 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWF-MPVNILLSFLIGSALAWIL 93 (292)
Q Consensus 15 l~Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~-ipv~~~ls~~ig~~lg~lv 93 (292)
+.+++...+|..+. . ++++-++.+.+=+ .+.+|...|. ++.+++.+++.+-.+ .++..++..++...+++.+
T Consensus 174 i~allplliG~~lg--n---l~~~l~~~~~~Gi-~~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~ 246 (326)
T PRK05274 174 VGAVLPLLVGFILG--N---LDPELRQFLGKAV-PVLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLA 246 (326)
T ss_pred hHHHHHHHHHHHHH--h---HHHhhHHHhcCCc-EEEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhH
Confidence 44557778888776 2 5555555554432 2388888777 899999999977744 4444444555566668888
Q ss_pred HHHhcCCCCccceeeeeeccCCcchhHHHHHHh
Q 022753 94 IKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPA 126 (292)
Q Consensus 94 ~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~a 126 (292)
.|+++..+...+.-+ ..+.||..--|-++..+
T Consensus 247 ~Rl~~~~~g~~g~a~-~ttaG~aic~pAAvaa~ 278 (326)
T PRK05274 247 DRLIGGGNGVAGAAA-GSTAGNAVATPAAVAAA 278 (326)
T ss_pred hheeecCCCcchHHH-HHHHHHHHHHHHHHHhh
Confidence 898875555444433 35678887777775433
No 18
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=54.64 E-value=35 Score=32.81 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHH-HHHHHHHHHHHH
Q 022753 12 MPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN-ILLSFLIGSALA 90 (292)
Q Consensus 12 ~~vl~Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ipv~-~~ls~~ig~~lg 90 (292)
+..+-.++-..+|.++. =+|+|-|+.+++-+- +..|-+-| .++..++++++.+-...-+. .++...++....
T Consensus 169 ~~lv~~ilPlliG~ilG-----NLD~~~r~fl~~~~~-~lIpFf~F-aLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~ 241 (314)
T TIGR00793 169 HVFVGAVLPFLVGFALG-----NLDPELRDFFSKAVQ-TLIPFFAF-ALGNTIDLGVIIQTGLLGILLGVSVIILTGIPL 241 (314)
T ss_pred HHHHHHHHHHHHHHHHh-----cCCHHHHHHhccCCC-eeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 44555666677898776 679999999988654 55565544 58889999999887655444 345777888888
Q ss_pred HHHHHHhcCCCCccceeeeeeccCCcchhHHHHHHh
Q 022753 91 WILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPA 126 (292)
Q Consensus 91 ~lv~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~a 126 (292)
++.-|.+.-.+..-| .-+.+..||...-|-++-++
T Consensus 242 ~~~dr~~~g~~g~aG-~A~sstAGnAvatPaavA~a 276 (314)
T TIGR00793 242 ILADKFIGGGDGTAG-IAASSSAGAAVATPVLIAEM 276 (314)
T ss_pred HHHHHHhcCCCCchh-hHHHHHHHHhhhhHHHHHHh
Confidence 898888752222223 33456789999999887555
No 19
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=51.28 E-value=43 Score=34.63 Aligned_cols=114 Identities=17% Similarity=0.062 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC--CChh--H------------HhHhhHHHHHHHhhHHHHHHhhccCCc---chhh
Q 022753 10 ALMPILKVLLVTALGLVLAIDRIDL--LGHS--V------------THSLNNLVFYVFNPALIGSNLAETITY---QSLI 70 (292)
Q Consensus 10 a~~~vl~Vlli~~~G~~la~~r~gi--l~~~--~------------~k~LsklV~~vflP~LiF~~La~sit~---~~l~ 70 (292)
.-.|++-+++++++||++. |.++ +.=. + .-.++..+-++++ +|..+.++-+.-+ +++.
T Consensus 8 ~~~p~l~lfl~i~lG~~lG--~iki~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl-~lFvy~vG~~~Gp~Ff~~l~ 84 (562)
T TIGR03802 8 RSNPEIALFLSLALGYLIG--KIKFGSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFF-ALFIFAIGYEVGPQFFASLK 84 (562)
T ss_pred HHCHHHHHHHHHHHhHhhc--ceEEeeeecchHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHHHHhhhccCHHHHHHHH
Confidence 4589999999999999998 4322 1111 0 0124444555555 3333444444333 3555
Q ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccceeeeeeccCCcchhHHHHHHhhh
Q 022753 71 S-LWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVC 128 (292)
Q Consensus 71 ~-lw~ipv~~~ls~~ig~~lg~lv~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~aLc 128 (292)
+ -|..-+..++..+++.++.|.+.+++..|...-..+. +.+.-||-.|+-+ .+|+.
T Consensus 85 ~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~-aGalT~tp~l~aA-~~a~~ 141 (562)
T TIGR03802 85 KDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLA-AGGLTQSAVIGTA-GDAIE 141 (562)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-hchhhccHHHHHH-HHHHH
Confidence 4 4666666677788889999999999999876655533 4667788888877 35553
No 20
>PRK05326 potassium/proton antiporter; Reviewed
Probab=50.53 E-value=1e+02 Score=31.65 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHH-HHHHHHH-HHHHHHHH
Q 022753 17 VLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNI-LLSFLIG-SALAWILI 94 (292)
Q Consensus 17 Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ipv~~-~ls~~ig-~~lg~lv~ 94 (292)
++....+|..++ ....-.++..+.....+..++.|. +|..++-.++++++.+.+...+.. +...+++ .+-.|+..
T Consensus 247 ~la~~iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~ 323 (562)
T PRK05326 247 FLAVYLAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSL 323 (562)
T ss_pred HHHHHHHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677676 433333344444455555677755 788899988998887654432221 1122222 22223334
Q ss_pred HHhcCCCCccceeeeeeccCCcchhHHHHH
Q 022753 95 KITRTPPHLQGLVIGCCSAGNMGNLLLIIV 124 (292)
Q Consensus 95 ~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv 124 (292)
+.++.|.+.+.+ ++. .|--|..++++.
T Consensus 324 ~~~~~~~~e~~~-i~~--~g~RG~v~i~lA 350 (562)
T PRK05326 324 LPFRFNLREKLF-ISW--VGLRGAVPIVLA 350 (562)
T ss_pred ccCCCCHhhhhe-eee--ecchhHHHHHHH
Confidence 445555554443 322 256788887653
No 21
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=49.58 E-value=1.5e+02 Score=24.83 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022753 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILI 94 (292)
Q Consensus 15 l~Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ipv~~~ls~~ig~~lg~lv~ 94 (292)
+-.++++.+..++. |+|++++++.+.+..-. ....|-.+--.-.+++ ..-+..-+...+..+....+|+++--++.
T Consensus 38 iAMlLLI~~~~~l~--k~g~l~~~te~Gi~FW~-amYIPIVVAMAA~QNV-v~Al~gG~~Allagi~av~~~~~~ip~ls 113 (125)
T PF03817_consen 38 IAMLLLIFARLWLQ--KKGLLSKPTEQGIEFWS-AMYIPIVVAMAAQQNV-VAALSGGPVALLAGIGAVAVCFLLIPLLS 113 (125)
T ss_pred HHHHHHHHHHHHHH--HcCCCChHHHhHHHHHH-ccHHHHHHHHhhhhhh-HHhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 45677788888898 99999999999986543 3555654433333331 12222223333334455566666655666
Q ss_pred HHhc
Q 022753 95 KITR 98 (292)
Q Consensus 95 ~i~~ 98 (292)
|+-|
T Consensus 114 r~g~ 117 (125)
T PF03817_consen 114 RIGR 117 (125)
T ss_pred hcCC
Confidence 6554
No 22
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=49.46 E-value=73 Score=30.42 Aligned_cols=137 Identities=13% Similarity=0.191 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhhc-cCCCChhHHhHhh---HHHHHHHhhHHHHHHhhccCCcchhhhhhH-HHHHHHHHHHHHHHHH
Q 022753 16 KVLLVTALGLVLAIDR-IDLLGHSVTHSLN---NLVFYVFNPALIGSNLAETITYQSLISLWF-MPVNILLSFLIGSALA 90 (292)
Q Consensus 16 ~Vlli~~~G~~la~~r-~gil~~~~~k~Ls---klV~~vflP~LiF~~La~sit~~~l~~lw~-ipv~~~ls~~ig~~lg 90 (292)
.+++-+++|..++ . .--.++..++.+. |....+.. .-++-+++.+++.+.+. ..+...+....+..++
T Consensus 28 ~~~~AillG~~i~--n~~~~~~~~~~~Gi~~~~k~~Lr~gI-----VLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~ 100 (305)
T PF03601_consen 28 ALLIAILLGMLIG--NLFFGLPARFKPGIKFSSKKLLRLGI-----VLLGFRLSFSDILALGWKGLLIIIIVVILTFLLT 100 (305)
T ss_pred HHHHHHHHHHHHh--hhccCCcHHHHhHHHHHHHHHHHHHH-----HHHCccccHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 4455666777666 3 2223344444443 34444433 44677889999999988 4444567788888899
Q ss_pred HHHH-HHhcCCCCccceeeeeeccCCcchhHHHHHHhhhhcC-----CCCCCCchhhhhhhHHHHHHHHHHhhHHHHHHH
Q 022753 91 WILI-KITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEES-----NSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYV 164 (292)
Q Consensus 91 ~lv~-~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~aLc~~~-----~~pfg~~~~c~~~g~aYv~l~~~~~~i~~Wt~g 164 (292)
+.+. |.+|.|++..-++- ++ .|+|+.. ..--+.+++....+++-+.++-.+.. +.+-+-
T Consensus 101 ~~lg~r~~~l~~~~~~Lia--~G------------tsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam-~~~P~l 165 (305)
T PF03601_consen 101 YWLGRRLFGLDRKLAILIA--AG------------TSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAM-FLYPLL 165 (305)
T ss_pred HHHHHHHhCCCHHHHHHHH--hh------------cccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHH-HHHHHH
Confidence 9898 99999987665532 11 1233221 00112234445566666666655543 555666
Q ss_pred HHHHhccccc
Q 022753 165 YYVMSLYLNK 174 (292)
Q Consensus 165 ~~ll~~~~~~ 174 (292)
++.+..++.+
T Consensus 166 ~~~l~l~~~~ 175 (305)
T PF03601_consen 166 GHALGLSPQQ 175 (305)
T ss_pred HHHhCCCHHH
Confidence 6666555333
No 23
>PRK03818 putative transporter; Validated
Probab=48.40 E-value=2.9e+02 Score=28.55 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=47.7
Q ss_pred CChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccceeeeeecc
Q 022753 35 LGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLIS-LWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSA 113 (292)
Q Consensus 35 l~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~-lw~ipv~~~ls~~ig~~lg~lv~~i~~~p~~~~g~~i~~~~f 113 (292)
+|+.+...+..+=+.+|+=|. -.+-++.+ .+.+.+ -|...+..++.++++.+++|+..++++.|...-...+ +.+.
T Consensus 54 ~~~~~~~~~~~~gl~lFv~~v-Gl~~Gp~f-~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-aGa~ 130 (552)
T PRK03818 54 LDSDMLHFIQEFGLILFVYTI-GIQVGPGF-FSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPLPVMLGIF-SGAV 130 (552)
T ss_pred cChHHHHHHHHHHHHHHHHHH-hhcccHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh-hccc
Confidence 444555555555555555332 12222221 234444 3555566667778888999999999998755433322 3445
Q ss_pred CCcchhHHH
Q 022753 114 GNMGNLLLI 122 (292)
Q Consensus 114 gN~g~LpL~ 122 (292)
-|+-.|.-+
T Consensus 131 T~tp~l~aa 139 (552)
T PRK03818 131 TNTPALGAG 139 (552)
T ss_pred cccHHHHHH
Confidence 555555555
No 24
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=46.93 E-value=79 Score=32.53 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhcc
Q 022753 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAET 63 (292)
Q Consensus 15 l~Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~s 63 (292)
+.+++++.+|.-.+ +|.|.++.--+|.+.+.--...+|..+|..+-++
T Consensus 91 LG~vlv~mlgvgva-e~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~ 138 (508)
T PRK11339 91 LGAILALVLGAGLA-ERVGLLPALMVKMASHVNARYASYMVLFIAFFSH 138 (508)
T ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 45556666676666 4899999999999998877777777777666555
No 25
>PRK04972 putative transporter; Provisional
Probab=46.34 E-value=1.8e+02 Score=30.07 Aligned_cols=137 Identities=18% Similarity=0.074 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC--------------------CChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhh
Q 022753 12 MPILKVLLVTALGLVLAIDRIDL--------------------LGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLIS 71 (292)
Q Consensus 12 ~~vl~Vlli~~~G~~la~~r~gi--------------------l~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~ 71 (292)
.|++-+++.+++||++. |..+ +....-..+..+=+.+|+=|. -.+-++.+ .+.+.+
T Consensus 12 ~~~~~lf~~i~lG~~lG--~i~~~~~~LG~~~g~L~vgl~~g~~~~~~~~~~~~~gl~lF~~~v-G~~~Gp~F-~~~l~~ 87 (558)
T PRK04972 12 NYILLLFVVLALGLCLG--KLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCV-GVEAGPNF-FSIFFR 87 (558)
T ss_pred CChHHHHHHHHHHHhhh--ceEEeeEecCcchHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHH-hhhhhHHH-HHHHHH
Confidence 68889999999999888 4222 121111112223333333221 11122221 234444
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccceeeeeeccCCcchhHHHHHHhhhhcCCCCCCCc-hh-hhhhhHHH
Q 022753 72 -LWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDT-SV-CSSYGKAY 148 (292)
Q Consensus 72 -lw~ipv~~~ls~~ig~~lg~lv~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~aLc~~~~~pfg~~-~~-c~~~g~aY 148 (292)
-|...+..++..+++.++++.+.|+++.|...-... .+.+..|+-.|.-+. .++.+. + |=.++ .. -.+-+++|
T Consensus 88 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~aGa~T~tp~l~~a~-~~~~~~-~-~~~~~~~~~~~~~~vgY 163 (558)
T PRK04972 88 DGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGM-LAGSMTSTPVLVGAG-DTLRHS-G-AESRQLSLALDNLSLGY 163 (558)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH-hhccccCcHHHHHHH-HHHhcc-C-ccccchhcccCccchhH
Confidence 355555566777888899999999999886654443 346677777777763 333211 1 11110 00 01236777
Q ss_pred HHHHHHHh
Q 022753 149 ASLSMAVG 156 (292)
Q Consensus 149 v~l~~~~~ 156 (292)
...|-+..
T Consensus 164 a~~y~~g~ 171 (558)
T PRK04972 164 ALTYLIGL 171 (558)
T ss_pred HhHHHHHH
Confidence 77776554
No 26
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=42.81 E-value=1.4e+02 Score=30.48 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhH
Q 022753 17 VLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWF 74 (292)
Q Consensus 17 Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ 74 (292)
++...++|.+++ ..+..+. ...=..+++.+++|.++|..=-+ ++.+++.+.|.
T Consensus 25 ~v~lil~Gi~lg--~~~~~~~--~~~~~~~~~~~~Lp~lLF~~g~~-~~~~~l~~~~~ 77 (525)
T TIGR00831 25 PIALILAGLLLG--LAGLLPE--VPLDREIVLFLFLPPLLFEAAMN-TDLRELRENFR 77 (525)
T ss_pred HHHHHHHHHHHH--hccccCC--CCCCHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHH
Confidence 456667787777 3322221 11112466789999999987654 58888877663
No 27
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.63 E-value=40 Score=24.17 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 022753 73 WFMPVNILLSFLIGSALAWILIKIT 97 (292)
Q Consensus 73 w~ipv~~~ls~~ig~~lg~lv~~i~ 97 (292)
+++.+.+++++++|+++||++....
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~ 42 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPS 42 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778889999999999887643
No 28
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=41.83 E-value=49 Score=29.42 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhcc-CCcchhhhhh-HHHHHHHHHHHHHHHHHHHHHHHh
Q 022753 20 VTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAET-ITYQSLISLW-FMPVNILLSFLIGSALAWILIKIT 97 (292)
Q Consensus 20 i~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~s-it~~~l~~lw-~ipv~~~ls~~ig~~lg~lv~~i~ 97 (292)
...+|..+. +....+-+....++....++.+ -++-.+++++ ...+++.+.. -..+.++.+.+-+.+-|++..+++
T Consensus 4 ~li~Gi~lG--~~~~~~~~~~~~~~~~~L~lLL-F~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll 80 (191)
T PF03956_consen 4 ALILGILLG--YFLRPPFSLIDKISTYALYLLL-FLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLL 80 (191)
T ss_pred eHHHHHHHH--HHhcccccccccHHHHHHHHHH-HHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566665 4444342222445555554444 4455677765 3456666443 334444333333444456666677
Q ss_pred cCC
Q 022753 98 RTP 100 (292)
Q Consensus 98 ~~p 100 (292)
..|
T Consensus 81 ~~~ 83 (191)
T PF03956_consen 81 GLS 83 (191)
T ss_pred cCC
Confidence 555
No 29
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=41.61 E-value=96 Score=31.10 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=59.3
Q ss_pred hccCCCChhH---HhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 022753 30 DRIDLLGHSV---THSLNNLVFYVFNPALIGSNLAETITYQSLISLWFM--PVNILLSFLIGSALAWILIKITRTPPHLQ 104 (292)
Q Consensus 30 ~r~gil~~~~---~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~i--pv~~~ls~~ig~~lg~lv~~i~~~p~~~~ 104 (292)
|-.|++|++- .+.++|++..-++|++++.-=....+++++.+.--. .+.++.+.+...+-++++.|.++.-+-..
T Consensus 285 K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEs 364 (414)
T PF03390_consen 285 KAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVES 364 (414)
T ss_pred HHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 3678999765 567889999999999887654444588887775322 22233334444566788899999766666
Q ss_pred ceeee--eeccCCcchh
Q 022753 105 GLVIG--CCSAGNMGNL 119 (292)
Q Consensus 105 g~~i~--~~~fgN~g~L 119 (292)
+.+-+ ++..|-+|++
T Consensus 365 AItaGLC~an~GGtGDv 381 (414)
T PF03390_consen 365 AITAGLCMANMGGTGDV 381 (414)
T ss_pred HHHhhhcccCCCCCCcc
Confidence 66544 3444666666
No 30
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=41.57 E-value=3.8e+02 Score=26.92 Aligned_cols=128 Identities=19% Similarity=0.138 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhccCCCChhHHhHhhHHH-----HHHHhhHHHHHHhhccCCcchhhhh--hHHHHHHHHHHHHHHHHH
Q 022753 18 LLVTALGLVLAIDRIDLLGHSVTHSLNNLV-----FYVFNPALIGSNLAETITYQSLISL--WFMPVNILLSFLIGSALA 90 (292)
Q Consensus 18 lli~~~G~~la~~r~gil~~~~~k~LsklV-----~~vflP~LiF~~La~sit~~~l~~l--w~ipv~~~ls~~ig~~lg 90 (292)
++......++. +.|++|++..+...++. .++|.-||+-.++-.- +.+-|.+- .++|... .+.+.+.+++
T Consensus 63 il~~f~ps~Lv--~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm-~RklLika~~r~~p~il-~g~~~a~~~g 138 (414)
T PF03390_consen 63 ILCIFVPSALV--YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGM-NRKLLIKAFARFIPPIL-GGVIGAFLLG 138 (414)
T ss_pred HHHHHHHHHHH--HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhc-CHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45555567788 89999999999988876 4688889988888654 55555442 3444443 6677777778
Q ss_pred HHHHHHhcCCCCccc--eeeeeeccCC-cchhHHHHHHhhhhcCCCCCCCchhhhhhhHHHHHHHHH
Q 022753 91 WILIKITRTPPHLQG--LVIGCCSAGN-MGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMA 154 (292)
Q Consensus 91 ~lv~~i~~~p~~~~g--~~i~~~~fgN-~g~LpL~iv~aLc~~~~~pfg~~~~c~~~g~aYv~l~~~ 154 (292)
.++..++..+..+-= .++-..+-|| -|.+|+..+-|=. .. .|.++-.++-++.+.+...
T Consensus 139 ~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~----~g-~~~~~~~s~~ipa~~lgNi 200 (414)
T PF03390_consen 139 GLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEA----LG-QDAEEYFSQLIPALTLGNI 200 (414)
T ss_pred HHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHH----hC-CCHHHHHHHHHHHHHHHHH
Confidence 888887775443322 2223333344 6799999766521 11 2355556666666665544
No 31
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=39.92 E-value=3e+02 Score=29.95 Aligned_cols=66 Identities=9% Similarity=0.021 Sum_probs=39.2
Q ss_pred hhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhh---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 022753 37 HSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL---WFMPVNILLSFLIGSALAWILIKITRTPPHL 103 (292)
Q Consensus 37 ~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~l---w~ipv~~~ls~~ig~~lg~lv~~i~~~p~~~ 103 (292)
.+..+.+..++..+|+|.+..+ .+-.+++..+.+. +.+.+..+++++.=.+-+++.++.++.|.+.
T Consensus 313 ~~l~ekle~~~~~lflPlFFv~-vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~e 381 (832)
T PLN03159 313 VTLIEKLEDFVSGLLLPLFFAI-SGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFRE 381 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3445567777888999876554 5666688777653 2222333333333345567777888877553
No 32
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.28 E-value=28 Score=28.86 Aligned_cols=22 Identities=9% Similarity=0.489 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 022753 79 ILLSFLIGSALAWILIKITRTP 100 (292)
Q Consensus 79 ~~ls~~ig~~lg~lv~~i~~~p 100 (292)
+++++++|.++|+++.|+....
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4678899999999999987744
No 33
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.45 E-value=58 Score=24.63 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 022753 71 SLWFMPVNILLSFLIGSALAWILIK 95 (292)
Q Consensus 71 ~lw~ipv~~~ls~~ig~~lg~lv~~ 95 (292)
++|...+.+.++.++|.+.|++++|
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777888999999988886
No 34
>PRK01844 hypothetical protein; Provisional
Probab=36.78 E-value=59 Score=24.67 Aligned_cols=25 Identities=16% Similarity=0.473 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 022753 72 LWFMPVNILLSFLIGSALAWILIKI 96 (292)
Q Consensus 72 lw~ipv~~~ls~~ig~~lg~lv~~i 96 (292)
.|...+.++++.++|.+.|+.++|-
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5665666668889999999988873
No 35
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=35.84 E-value=1.8e+02 Score=30.17 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=29.7
Q ss_pred hhHHHHHHHhhHHHHHHhhccCCcchhhh-hhHHHHHHHHHHHHHH
Q 022753 43 LNNLVFYVFNPALIGSNLAETITYQSLIS-LWFMPVNILLSFLIGS 87 (292)
Q Consensus 43 LsklV~~vflP~LiF~~La~sit~~~l~~-lw~ipv~~~ls~~ig~ 87 (292)
=+.+.+.+++|.++|..=-.. +..++.+ ++.+.....+.++++.
T Consensus 64 ~~~lf~~~~LPpIlFe~g~~l-~~~~f~~n~~~Il~lAv~Gvlit~ 108 (559)
T TIGR00840 64 DSSYFFLYLLPPIVLDAGYFM-PQRNFFENLGSILIFAVVGTLINA 108 (559)
T ss_pred CHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999876554 7777766 5555555555444443
No 36
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=34.49 E-value=2.8e+02 Score=23.38 Aligned_cols=48 Identities=27% Similarity=0.528 Sum_probs=32.8
Q ss_pred HHHHHhhccCCcchhh---hhhH-HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 022753 55 LIGSNLAETITYQSLI---SLWF-MPVNILLSFLIGSALAWILIKITRTPPH 102 (292)
Q Consensus 55 LiF~~La~sit~~~l~---~lw~-ipv~~~ls~~ig~~lg~lv~~i~~~p~~ 102 (292)
++-..++..++.+++. ++|. ..+..++...++.+.+|++.|..+.|..
T Consensus 55 iiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ 106 (156)
T TIGR03082 55 VIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPL 106 (156)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 3456677777766544 4444 3444557778888899999999997743
No 37
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=34.22 E-value=34 Score=31.67 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=0.0
Q ss_pred hhhhhcChhH------------HHHHHHHHHhhh-----------hhhhhhhccccchhhcc
Q 022753 251 DLKMIFAPST------------IAAVLCLFECLL-----------QFYATSVSDFSYFFKNF 289 (292)
Q Consensus 251 ~l~~~~~Ppt------------ia~ilg~ivG~v-----------p~l~~~~~~~~~f~~~~ 289 (292)
|+.++++|.. +++++|.+||.. .++|++++.+++--+||
T Consensus 45 Ni~~lf~p~~l~a~~~Sikis~aSsl~G~lig~~~a~alv~~~~ps~ir~~lltfsgvaSnF 106 (282)
T COG4132 45 NIADLFQPFILQAYWISIKISFASSLLGLLIGFLLAWALVLGGLPSWIRSFLLTFSGVASNF 106 (282)
T ss_pred HHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHhhhhhhhhhc
No 38
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=33.27 E-value=4.7e+02 Score=25.58 Aligned_cols=80 Identities=14% Similarity=0.009 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhcc-CCcc---hhhhhhHHHHHHHHHH
Q 022753 9 VALMPILKVLLVTALG-LVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAET-ITYQ---SLISLWFMPVNILLSF 83 (292)
Q Consensus 9 ~a~~~vl~Vlli~~~G-~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~s-it~~---~l~~lw~ipv~~~ls~ 83 (292)
..+..+.-+......| .++..|-.|-+.+++++.-.+.......+.+++.-...- .+.+ ...++|.+.+.+.+..
T Consensus 168 ~~l~gl~~~~~~~l~Ga~~l~~kT~g~l~~rA~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~l~v 247 (346)
T COG1294 168 ALLCGLGLVLMYVLHGAAWLLLKTEGALQERARKLARIAALLTLVGFLLFGVWVTPGLDGFAASRWFSLPWLFLFSLLPV 247 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555555555555 344445678888999988888777666666666633322 2222 1234555555554443
Q ss_pred HHHHH
Q 022753 84 LIGSA 88 (292)
Q Consensus 84 ~ig~~ 88 (292)
+...+
T Consensus 248 ~~~~l 252 (346)
T COG1294 248 VGALL 252 (346)
T ss_pred HHHHH
Confidence 33333
No 39
>PRK11677 hypothetical protein; Provisional
Probab=32.97 E-value=49 Score=27.99 Aligned_cols=21 Identities=10% Similarity=0.384 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 022753 79 ILLSFLIGSALAWILIKITRT 99 (292)
Q Consensus 79 ~~ls~~ig~~lg~lv~~i~~~ 99 (292)
++++.++|.++|+++.|....
T Consensus 6 a~i~livG~iiG~~~~R~~~~ 26 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNR 26 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 347778999999999997653
No 40
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=31.34 E-value=3.3e+02 Score=28.42 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=60.6
Q ss_pred hHhhHHHHHHHhhHHHHHHhhccCCcchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccceeeeeeccCCcchh
Q 022753 41 HSLNNLVFYVFNPALIGSNLAETITYQSLIS-LWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNL 119 (292)
Q Consensus 41 k~LsklV~~vflP~LiF~~La~sit~~~l~~-lw~ipv~~~ls~~ig~~lg~lv~~i~~~p~~~~g~~i~~~~fgN~g~L 119 (292)
+.+.-+ -.+++ .+.|.+++-+++++.+.+ +|.+....++.++.=.+..++.+|.++.|.+.+-. ++ ...+--|-.
T Consensus 264 ~~i~pf-~~lll-~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~-~g-l~L~~~Gef 339 (621)
T PRK03562 264 SDIEPF-KGLLL-GLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRW-FA-VLLGQGGEF 339 (621)
T ss_pred HHHHHH-HHHHH-HHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHH-HH-HHHhccccH
Confidence 334444 24667 478899999999988764 44443334344444456678888999887554332 22 233333555
Q ss_pred HHHHHHhhhhcCCCCCCCchhhhhhhHHHHHHHHHHhhHH
Q 022753 120 LLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIY 159 (292)
Q Consensus 120 pL~iv~aLc~~~~~pfg~~~~c~~~g~aYv~l~~~~~~i~ 159 (292)
.+++. ++..+.+ -.+ ++..+--+.-+.+++++.-++
T Consensus 340 ~~vl~-~~a~~~~-~i~--~~~~~~lv~~v~lS~~~tP~l 375 (621)
T PRK03562 340 AFVVF-GAAQMAN-VLE--PEWAKLLTLAVALSMAATPLL 375 (621)
T ss_pred HHHHH-HHHHHCC-CCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 55543 3333333 232 344445555555666555444
No 41
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=31.33 E-value=5.4e+02 Score=25.84 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=63.7
Q ss_pred HHHHhhccCCCChhHHhHhhHHH-----HHHHhhHHHHHHhhccCCcchhhhhh--HHHHHHHHHHHHHHHHHHHHHHHh
Q 022753 25 LVLAIDRIDLLGHSVTHSLNNLV-----FYVFNPALIGSNLAETITYQSLISLW--FMPVNILLSFLIGSALAWILIKIT 97 (292)
Q Consensus 25 ~~la~~r~gil~~~~~k~LsklV-----~~vflP~LiF~~La~sit~~~l~~lw--~ipv~~~ls~~ig~~lg~lv~~i~ 97 (292)
.++. +.|++|++..+..+.+. .+++.+||+--++-.- +.+-|.+-. ++|- .+..++.+.+.|.++..++
T Consensus 87 a~~v--~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgm-nRklLIk~~~~~i~~-il~g~v~A~~~g~lVG~~~ 162 (438)
T COG3493 87 AYLV--FYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGM-NRKLLIKSLKRYIPP-ILAGMVGAAAVGILVGLLF 162 (438)
T ss_pred HHHH--HhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhc-cHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHh
Confidence 3455 78999999999998875 5789999999887653 444444321 2222 2356667777888888888
Q ss_pred cCCCCccce--eeeeeccCC-cchhHHHHHHh
Q 022753 98 RTPPHLQGL--VIGCCSAGN-MGNLLLIIVPA 126 (292)
Q Consensus 98 ~~p~~~~g~--~i~~~~fgN-~g~LpL~iv~a 126 (292)
..+..+.=. ++-..+-|| -|.+|+..+-+
T Consensus 163 G~~~~d~~m~~vlPIM~GG~GaGavPLS~iYs 194 (438)
T COG3493 163 GLSFQDTMMYVVLPIMGGGMGAGAVPLSEIYS 194 (438)
T ss_pred CCChHHeeeeEEeeeccCCCCCCcccHHHHHH
Confidence 865544332 233233333 35899987766
No 42
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=31.30 E-value=3.8e+02 Score=26.36 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhhccCC---CChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhh------HHHHHHHHHHHH
Q 022753 15 LKVLLVTALGLVLAIDRIDL---LGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLW------FMPVNILLSFLI 85 (292)
Q Consensus 15 l~Vlli~~~G~~la~~r~gi---l~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw------~ipv~~~ls~~i 85 (292)
.+.+.+...|-++. ..|+ +.+.+++.+.+++.- |+ --.++.+-+.|.+.++- ...+...+++.-
T Consensus 213 ~pLig~Lm~Gnl~r--Esgv~~rLs~taqn~l~nivTi-~L----Gl~vGat~~a~~fL~~~tl~I~~LGl~Af~~~tag 285 (360)
T PF03977_consen 213 APLIGMLMFGNLLR--ESGVVERLSKTAQNELMNIVTI-FL----GLTVGATMTAETFLNPQTLKILVLGLVAFAFSTAG 285 (360)
T ss_pred HHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHH-HH----HHHHHHhccHHHhcCHHHHHHHHHHHHHHHHHHhH
Confidence 45566667787776 7777 556677777777663 33 23344444445444443 333344455555
Q ss_pred HHHHHHHHHHHhc
Q 022753 86 GSALAWILIKITR 98 (292)
Q Consensus 86 g~~lg~lv~~i~~ 98 (292)
|-+.|++..++.|
T Consensus 286 Gvl~~k~mn~f~k 298 (360)
T PF03977_consen 286 GVLFAKLMNLFSK 298 (360)
T ss_pred HHHHHHHHHHHhC
Confidence 5566666555554
No 43
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=31.06 E-value=7.4e+02 Score=27.17 Aligned_cols=163 Identities=9% Similarity=0.117 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhH----HhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHH
Q 022753 1 MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSV----THSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMP 76 (292)
Q Consensus 1 m~~~~l~~~a~~~vl~Vlli~~~G~~la~~r~gil~~~~----~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ip 76 (292)
|++...++.--.++-..++..++|+++...-.|++++.. ....=. +..+.+.-.+|.-=.+- ....+.+.|..+
T Consensus 25 ~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~le-IteIvL~I~LFa~Gl~L-~~~~Lrr~wrsV 102 (810)
T TIGR00844 25 FSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLE-ISRILLCLQVFAVSVEL-PRKYMLKHWVSV 102 (810)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHH-HHHHHHHHHHHHHHHhC-CHHHHHHhHHHH
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhcCCCCccceeeeeeccCCcchhHHHHHHhhhh---cCCCCCC-----CchhhhhhhHH
Q 022753 77 VNIL-LSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCE---ESNSPFG-----DTSVCSSYGKA 147 (292)
Q Consensus 77 v~~~-ls~~ig~~lg~lv~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~aLc~---~~~~pfg-----~~~~c~~~g~a 147 (292)
...+ +.+.++.+++.++++.+-+.-.+-.-++.++...=|-- ++..++.+ .+..|=. ..+.-.+.|++
T Consensus 103 ~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDP---VLAssV~kg~~~~rvP~rLR~lL~~ESGlNDGlA 179 (810)
T TIGR00844 103 TMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDP---VLAQSVVSGTFAQKVPGHLRNLLSCESGCNDGLA 179 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcH---HHHHHHHhccccccCChHHHhHHhhhhhcccHHH
Q ss_pred HHHHHHHHhhH-------------HHHHHHHHHH
Q 022753 148 YASLSMAVGAI-------------YIWTYVYYVM 168 (292)
Q Consensus 148 Yv~l~~~~~~i-------------~~Wt~g~~ll 168 (292)
+.+++.++..+ +.+++.+.++
T Consensus 180 fpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~ 213 (810)
T TIGR00844 180 FPFVFLSMDLLLYPGRGGEIVKDWICVTILWECI 213 (810)
T ss_pred HHHHHHHHHHHhccCccccchhhHHHHHHHHHHH
No 44
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=30.32 E-value=5e+02 Score=27.27 Aligned_cols=63 Identities=21% Similarity=0.345 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHhhccCCCChhH--HhHh---hHHHHHHHhhHHHHHHhhccCCcch
Q 022753 3 ILDLFEVALMPILKVLLVTAL----GLVLAIDRIDLLGHSV--THSL---NNLVFYVFNPALIGSNLAETITYQS 68 (292)
Q Consensus 3 ~~~l~~~a~~~vl~Vlli~~~----G~~la~~r~gil~~~~--~k~L---sklV~~vflP~LiF~~La~sit~~~ 68 (292)
+.+.+-..+.|+++++.-+++ ...+. ..|+++++. -..+ ++ .++.|+|.++-.+.|+.+..+.
T Consensus 99 ~~~~is~if~PiIP~l~a~Gll~gl~~ll~--~~g~~~~~s~~~~~l~~i~~-a~f~fLPiliays~Ak~~~~np 170 (610)
T TIGR01995 99 LIDLISGVFTPLLPALAGAGLLKAVLTLLT--MTGLISADSQTYQILNAMGD-AVFYFLPILLAITAAKRFKVNP 170 (610)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--hccccCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCh
Confidence 345566677888877744333 33343 567887642 2223 23 4567999999999999876654
No 45
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=30.29 E-value=1.6e+02 Score=29.10 Aligned_cols=66 Identities=29% Similarity=0.498 Sum_probs=40.5
Q ss_pred HhHhhHHHHHHHhhHHHHHHhhccCCcchhhhh-hHHHHHHHHHHHHH-----HHHHHHHHHH--hcCCCCccc
Q 022753 40 THSLNNLVFYVFNPALIGSNLAETITYQSLISL-WFMPVNILLSFLIG-----SALAWILIKI--TRTPPHLQG 105 (292)
Q Consensus 40 ~k~LsklV~~vflP~LiF~~La~sit~~~l~~l-w~ipv~~~ls~~ig-----~~lg~lv~~i--~~~p~~~~g 105 (292)
.+.++..+.++++|-.-|.|.+-+++...+... ++.++.+++...+| +..+|+..|. .+.|++.+.
T Consensus 245 eh~L~p~v~~lilPlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w 318 (373)
T TIGR00773 245 EHVLHPWVAYLILPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINF 318 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 445666699999999999999988765443322 33333333333333 5556666664 356766554
No 46
>COG2855 Predicted membrane protein [Function unknown]
Probab=29.82 E-value=4.4e+02 Score=25.72 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=63.1
Q ss_pred HHhhccCCcchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCccceeeeeeccCCcchhHHHHHHhhhhcCCCCCC
Q 022753 58 SNLAETITYQSLISLWFMPVN-ILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFG 136 (292)
Q Consensus 58 ~~La~sit~~~l~~lw~ipv~-~~ls~~ig~~lg~lv~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~aLc~~~~~pfg 136 (292)
.-++-++|++++.+.+.-.+. ..++...+.++++++.|.++.|++.--++-+ +.+=-|.=-. .| -+.-.+
T Consensus 77 vLlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld~~~a~Lia~--GssICGasAi---aA--~~pvik-- 147 (334)
T COG2855 77 VLLGFRLTLSDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLDKKLALLIAA--GSSICGASAI---AA--TAPVIK-- 147 (334)
T ss_pred HHHcceeeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHc--cchhhHHHHH---HH--hCCcCC--
Confidence 345778899999998765444 4466667788999999999999887665322 2111111111 11 111223
Q ss_pred CchhhhhhhHHHHHHHHHHhhHHHHHHHHHHHhccccc
Q 022753 137 DTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNK 174 (292)
Q Consensus 137 ~~~~c~~~g~aYv~l~~~~~~i~~Wt~g~~ll~~~~~~ 174 (292)
.+++....+++-+.++-.+.. +.+..-|+.+.-+.+.
T Consensus 148 a~~~eva~aIa~V~lfgtia~-llyP~l~~~l~l~~~~ 184 (334)
T COG2855 148 AEEEEVAVAIAVVVLFGTLAM-LLYPLLYPLLGLSPEQ 184 (334)
T ss_pred CCccccceehhhHHHHHHHHH-HHHHHHHHHhCCCcch
Confidence 345556666766666655443 4566667766655444
No 47
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=28.67 E-value=4.4e+02 Score=25.81 Aligned_cols=115 Identities=14% Similarity=0.171 Sum_probs=73.4
Q ss_pred ccCCCChhHHhHhhHHHH-----HHHhhHHHHHHhhccCCcchhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 022753 31 RIDLLGHSVTHSLNNLVF-----YVFNPALIGSNLAETITYQSLISL--WFMPVNILLSFLIGSALAWILIKITRTPPHL 103 (292)
Q Consensus 31 r~gil~~~~~k~LsklV~-----~vflP~LiF~~La~sit~~~l~~l--w~ipv~~~ls~~ig~~lg~lv~~i~~~p~~~ 103 (292)
+.|++|++..+..+.+.- +++.-||+-.++-.- +.+-|.+- .++|... .+++.+.++|-++..++..+..+
T Consensus 5 ~~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m-~Rk~Lik~~~r~~p~il-~g~~~a~~~g~lvG~l~G~~~~~ 82 (347)
T TIGR00783 5 FYNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGM-NRKLLLKALMRFIPPAL-IGMVLAVIVGILVGTLFGLGFDH 82 (347)
T ss_pred EeCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhc-cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHhH
Confidence 789999999999988653 688889998888654 55544442 3445443 67777888888888887765443
Q ss_pred --cceeeeeeccCC-cchhHHHHHHhhhhcCCCCCC-CchhhhhhhHHHHHHHH
Q 022753 104 --QGLVIGCCSAGN-MGNLLLIIVPAVCEESNSPFG-DTSVCSSYGKAYASLSM 153 (292)
Q Consensus 104 --~g~~i~~~~fgN-~g~LpL~iv~aLc~~~~~pfg-~~~~c~~~g~aYv~l~~ 153 (292)
...++-..+-|| -|.+|+..+-+= ..| +.++-.++-++.+.+..
T Consensus 83 ~~~~i~lPIm~GG~GaGavPLS~~Y~~------~~g~~~~~~~s~~ip~~~ign 130 (347)
T TIGR00783 83 SLMYIVMPIMAGGVGAGIVPLSIIYSA------ITGRSSEEIFSQLIPAVIIGN 130 (347)
T ss_pred hhheeeehhcCCCcccchhhHHHHHHH------HhCCCHHHHHHHHHHHHHHHH
Confidence 333343444444 679999976661 122 23444455555554444
No 48
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=27.95 E-value=2.3e+02 Score=28.44 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=43.7
Q ss_pred hhHHhHhhHHHHHHHhhHHHHHHhhccCCc-chhhhhhH--HHHHHHHHHHHH-----HHHHHHHHHH--hcCCCCccce
Q 022753 37 HSVTHSLNNLVFYVFNPALIGSNLAETITY-QSLISLWF--MPVNILLSFLIG-----SALAWILIKI--TRTPPHLQGL 106 (292)
Q Consensus 37 ~~~~k~LsklV~~vflP~LiF~~La~sit~-~~l~~lw~--ipv~~~ls~~ig-----~~lg~lv~~i--~~~p~~~~g~ 106 (292)
++..+.++.+|.++++|-.-|.|.+-+++. +.+.+.+. .+.-+.+.-++| +..+|+..|. .+.|++.+..
T Consensus 259 ~rle~~L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~ 338 (423)
T PRK14853 259 EHLEHRLRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWI 338 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHH
Confidence 345678999999999999999999988765 43423333 333333333333 4455666654 4577765553
No 49
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=27.78 E-value=2.9e+02 Score=26.38 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=35.0
Q ss_pred HHHHhhccCCcchhhh----hhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcc
Q 022753 56 IGSNLAETITYQSLIS----LWFMPVNILLSFLIGSALAWILIKIT-RTPPHLQ 104 (292)
Q Consensus 56 iF~~La~sit~~~l~~----lw~ipv~~~ls~~ig~~lg~lv~~i~-~~p~~~~ 104 (292)
+...++-+++.+|+.+ ++.+.+..+..+++.=+++|.+++++ +.|++.+
T Consensus 52 mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~l~ 105 (328)
T TIGR00832 52 MMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFEYI 105 (328)
T ss_pred HHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4555667778887766 45666666677778888999999975 7665543
No 50
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=27.15 E-value=3.1e+02 Score=26.16 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=40.1
Q ss_pred cCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcc---hhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhcCCCC
Q 022753 32 IDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQ---SLISLWFMPV-NILLSFLIGSALAWILIKITRTPPH 102 (292)
Q Consensus 32 ~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~---~l~~lw~ipv-~~~ls~~ig~~lg~lv~~i~~~p~~ 102 (292)
.|..+-..-+.+.+... ..+-..++.++|++ ++.+||+..+ ..+.+..++.+.+|+..|..+.|+.
T Consensus 15 ~~~~~~~~p~~~r~~~q-----~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~ 84 (318)
T PF05145_consen 15 FGPLPLRVPRRLRNAGQ-----AILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRA 84 (318)
T ss_pred hCCCccCCCHHHHHHHH-----HHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 33334444444444443 44556778888776 4555555433 3446677788889999999887644
No 51
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=26.35 E-value=66 Score=32.82 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHH
Q 022753 19 LVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSF 83 (292)
Q Consensus 19 li~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ipv~~~ls~ 83 (292)
++..+|.-+| +|.|+++.--|+.+++.--.+.+|..+|..+.++ +.+|..-.-.+|+...+-.
T Consensus 96 Lv~mLGigvA-E~SGll~alm~~~~~~~pk~llt~~vvfigi~s~-~asDaayVVlpPlaAmiF~ 158 (516)
T COG2978 96 LVVMLGIGVA-ERSGLLSALMRKLLNKVPKRLLTFTVVFIGILSH-IASDAAYVVLPPLAAMIFI 158 (516)
T ss_pred HHHHHhhhhh-hhcccHHHHHHHHHhhcchHHHhhHHHHHHHHHH-HHhhcceeEecchHHHHHH
Confidence 4444555556 5999999999999999999999999999999998 6677666556666654443
No 52
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.16 E-value=63 Score=25.25 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=20.4
Q ss_pred hhcChhHHHH--HHHHHHh--hhhhhhhhhcc
Q 022753 254 MIFAPSTIAA--VLCLFEC--LLQFYATSVSD 281 (292)
Q Consensus 254 ~~~~Pptia~--ilg~ivG--~vp~l~~~~~~ 281 (292)
+.=+||++|- ++|+.|| .+|+-|+.+-.
T Consensus 24 rsPAPP~iAlvGllGilvGeq~~p~~~~ll~g 55 (93)
T COG4317 24 RSPAPPAIALVGLLGILVGEQIVPWAKRLLGG 55 (93)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3468999883 4677787 68888887643
No 53
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=23.87 E-value=7.3e+02 Score=25.62 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcc
Q 022753 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQ 67 (292)
Q Consensus 15 l~Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~ 67 (292)
+.+++++.+|.-+| +|.|+++.-.||.+.+.=-...+|..+|..+.+++--|
T Consensus 81 LG~Vlv~mlgvgvA-E~sGll~a~~r~~~~~~p~~~vt~~v~f~Gi~sniasD 132 (502)
T PF03806_consen 81 LGLVLVMMLGVGVA-EKSGLLSALMRKLVLKAPPRLVTPAVVFVGIMSNIASD 132 (502)
T ss_pred HHHHHHHHHHHHHH-HHhchHHHHHHHHhccCCcchhhHHHHHHHHHhccccc
Confidence 34555555666666 49999999999999999999999999999998885433
No 54
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.57 E-value=59 Score=26.04 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhhh-hhhhhhc
Q 022753 260 TIAAVLCLFECLLQ-FYATSVS 280 (292)
Q Consensus 260 tia~ilg~ivG~vp-~l~~~~~ 280 (292)
|+|+|+||+.|... +|...+|
T Consensus 33 ti~aiVg~i~Gf~~Qqls~tvy 54 (101)
T KOG4112|consen 33 TIGAIVGFIYGFAQQQLSVTVY 54 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999754 3444433
No 55
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=22.78 E-value=7.1e+02 Score=24.16 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHH--------HHHHhhccCCcchhhhhhHHHHHHHHH
Q 022753 11 LMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPAL--------IGSNLAETITYQSLISLWFMPVNILLS 82 (292)
Q Consensus 11 ~~~vl~Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~L--------iF~~La~sit~~~l~~lw~ipv~~~ls 82 (292)
.-|++.=+.+.+.|.+.- ..| ++..|-.-..+++.+..=|+ +..++-.+ .+...+ +.+|+..-+.
T Consensus 11 aIPL~M~~~Cf~yG~fv~--~~g--~d~~~~vAG~Vv~sL~~ICiALf~TAatIIrQli~t--y~~~~k-~~lP~iGY~~ 83 (347)
T PF10951_consen 11 AIPLLMALICFGYGAFVL--DYG--TDSNRFVAGPVVFSLGAICIALFTTAATIIRQLIHT--YNTFAK-YLLPIIGYLA 83 (347)
T ss_pred HHHHHHHHHHHHhhHHHc--ccC--CCcCceeecceeehHHHHHHHHHHHHHHHHHHHHhh--hhHHHH-HHhHHHHHHH
Confidence 446655556666776555 333 33344333444444444444 33444333 222222 5567666666
Q ss_pred HHHHHHHHHHHHHHhcCCCCccceeeeeeccCCcc-hhHHHH--HHhhh-----------hcCCCCCCCchhhhhhhHHH
Q 022753 83 FLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMG-NLLLII--VPAVC-----------EESNSPFGDTSVCSSYGKAY 148 (292)
Q Consensus 83 ~~ig~~lg~lv~~i~~~p~~~~g~~i~~~~fgN~g-~LpL~i--v~aLc-----------~~~~~pfg~~~~c~~~g~aY 148 (292)
.++...-||....--..|.+ ...||.. .++++- +.+.+ +.++.+.+.++++.+++..+
T Consensus 84 a~~T~i~G~~~~~~~~~~~~--------fVaGhVi~GvGlItaCVaT~AtSStrF~LIP~Ns~~~~~~~p~~afs~~~~~ 155 (347)
T PF10951_consen 84 AAITIIGGIYIFSSGPNAAY--------FVAGHVIFGVGLITACVATVATSSTRFTLIPKNSKGTSHEVPKGAFSRGQGN 155 (347)
T ss_pred HHHHHHHHHHHhcCCCChhh--------hccCceeechhHHHHHHHHhhhccccEEEeecCCCCCCCCCChhhcchHHHH
Confidence 66666666665222122221 1223332 122220 11111 11234555689999999999
Q ss_pred HHHHHH-HhhHHHHHHHHHHHhccc
Q 022753 149 ASLSMA-VGAIYIWTYVYYVMSLYL 172 (292)
Q Consensus 149 v~l~~~-~~~i~~Wt~g~~ll~~~~ 172 (292)
+++... +.++.-|-+++.+++.+.
T Consensus 156 ~Liav~~~~~li~~iw~~~Ll~~~~ 180 (347)
T PF10951_consen 156 ILIAVPILCALIGWIWAIVLLSSSD 180 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 998764 467788999999998753
No 56
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=22.73 E-value=6e+02 Score=25.54 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhccCCCChhH---HhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHH-HHHHHHHHHHH-HHHHHHH
Q 022753 19 LVTALGLVLAIDRIDLLGHSV---THSLNNLVFYVFNPALIGSNLAETITYQSLISLWFM-PVNILLSFLIG-SALAWIL 93 (292)
Q Consensus 19 li~~~G~~la~~r~gil~~~~---~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~i-pv~~~ls~~ig-~~lg~lv 93 (292)
.++.+=+++- ..|++|++. .+.++++.-.=++=.|++.-=..-.+++++.+-.-. -+...++.+++ ...||++
T Consensus 295 ~MIil~a~lk--~~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~ 372 (438)
T COG3493 295 FMIILVAILK--AANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFV 372 (438)
T ss_pred HHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 3444444343 788999876 556777766656655555432232367776654222 12222444444 4567889
Q ss_pred HHHhcCCCCccceeeeeec
Q 022753 94 IKITRTPPHLQGLVIGCCS 112 (292)
Q Consensus 94 ~~i~~~p~~~~g~~i~~~~ 112 (292)
.|+.+.=+-....+-.+|.
T Consensus 373 grl~~~YPVEaAI~aglC~ 391 (438)
T COG3493 373 GRLMGFYPVEAAITAGLCM 391 (438)
T ss_pred HHHhcCCchHHHHHHhHHh
Confidence 9999865555554433443
No 57
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=22.71 E-value=83 Score=24.95 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccce
Q 022753 71 SLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGL 106 (292)
Q Consensus 71 ~lw~ipv~~~ls~~ig~~lg~lv~~i~~~p~~~~g~ 106 (292)
++|...+..++.+++.+++-+++.++++.|...++.
T Consensus 15 sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~ 50 (108)
T PF07219_consen 15 SLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRW 50 (108)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 567777777788888889999999999999766554
No 58
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=22.67 E-value=7.1e+02 Score=26.18 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcch
Q 022753 3 ILDLFEVALMPILKVLLVTALGL-VLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQS 68 (292)
Q Consensus 3 ~~~l~~~a~~~vl~Vlli~~~G~-~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~ 68 (292)
+++.+-..+.|++++++-+++-- ++. ..||++++..-..-.=..+.|||-++-.+-|+.+.-+.
T Consensus 13 ~~~~is~if~P~ip~l~a~Gll~gll~--~~g~~~~~~~l~~~~~a~fyfLPi~ia~saak~f~~n~ 77 (639)
T PRK15083 13 FGRFLSNMVMPNIGAFIAWGIITALFI--PTGWLPNETLAKLVGPMITYLLPLLIGYTGGKLVGGER 77 (639)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHH--ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 45667778889988886554422 233 45888887422222224568999999999999876554
No 59
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=22.10 E-value=1.5e+02 Score=31.01 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHh----------------HhhH-----------HHHHHHhhHHHHHHhhccCCcc
Q 022753 15 LKVLLVTALGLVLAIDRIDLLGHSVTH----------------SLNN-----------LVFYVFNPALIGSNLAETITYQ 67 (292)
Q Consensus 15 l~Vlli~~~G~~la~~r~gil~~~~~k----------------~Lsk-----------lV~~vflP~LiF~~La~sit~~ 67 (292)
+-+.+.++.|+++-++|..|+++.... ..++ +-|.+++|.++|.+--+- +.+
T Consensus 42 ~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sgy~l-~k~ 120 (575)
T KOG1965|consen 42 LLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSGYSL-KKK 120 (575)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhccccee-chh
Confidence 444566777888886676788887654 2334 788999999999876543 333
Q ss_pred -hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022753 68 -SLISLWFMPVNILLSFLIGSALAWILIKITR 98 (292)
Q Consensus 68 -~l~~lw~ipv~~~ls~~ig~~lg~lv~~i~~ 98 (292)
=..+...+..+.+..+.|++.+-...++++.
T Consensus 121 ~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~ 152 (575)
T KOG1965|consen 121 QFFRNIGSILLFAIFGTFISAVIIGAGVYLLG 152 (575)
T ss_pred hhhhhhHHHHHhhhcceeeehhHHhhHHHHHh
Confidence 3334444555544444444333334445543
No 60
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=21.64 E-value=3.5e+02 Score=22.59 Aligned_cols=33 Identities=9% Similarity=0.002 Sum_probs=19.8
Q ss_pred ccCCCC-hhHHhHhhHHHHHHHhhHHHHHHhhcc
Q 022753 31 RIDLLG-HSVTHSLNNLVFYVFNPALIGSNLAET 63 (292)
Q Consensus 31 r~gil~-~~~~k~LsklV~~vflP~LiF~~La~s 63 (292)
|.|+++ .+..+...+-+..+.+++-+..++...
T Consensus 3 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 3 RSGFFERPEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred cchhccChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888998 555555555555565555555554443
No 61
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=21.26 E-value=5.3e+02 Score=25.05 Aligned_cols=82 Identities=20% Similarity=0.265 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHhHhh-------HHHHHHHhhHHHHHHhhccC-Ccc---hhhhhhH-HHHHHHHH
Q 022753 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLN-------NLVFYVFNPALIGSNLAETI-TYQ---SLISLWF-MPVNILLS 82 (292)
Q Consensus 15 l~Vlli~~~G~~la~~r~gil~~~~~k~Ls-------klV~~vflP~LiF~~La~si-t~~---~l~~lw~-ipv~~~ls 82 (292)
.++++-.++|..+. -. -..++..+.++ ++...+. ..|+|.++...+ +.+ +..+++. ...+.+++
T Consensus 3 ~~ilia~vlGi~~G--~~-~~~~~~~~~l~~~G~lfi~ll~~~v-~PLVf~sii~gi~~l~~~~~~g~i~~~~i~~~~~~ 78 (390)
T PF00375_consen 3 LQILIAIVLGILLG--LI-DFSPEAAQWLSFPGDLFIRLLKMLV-LPLVFSSIISGIASLGDAKKLGRIGGRTILYFLLT 78 (390)
T ss_dssp HHHHHHHHHHHHHH--HH-TTHHHHHHHTHHHHHHHHHHHHHHH-HHHHHHHHHHHCHSHT-TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hH-HhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCccccccccHHHHHHHHHHHH
Confidence 35555556666554 11 14444444433 2222233 445777777765 333 4444433 34556688
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 022753 83 FLIGSALAWILIKITRTP 100 (292)
Q Consensus 83 ~~ig~~lg~lv~~i~~~p 100 (292)
++++.++|.++..++++-
T Consensus 79 t~~A~~ig~~~~~~~~pg 96 (390)
T PF00375_consen 79 TLLAAAIGLLVALLFQPG 96 (390)
T ss_dssp HHHHHHHHHHHHHHS-SS
T ss_pred HHHHHHHHHHHheeeCCC
Confidence 888999999999999865
No 62
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=21.20 E-value=4.6e+02 Score=25.67 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHH---HHHHHHHHHHHHH
Q 022753 17 VLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNIL---LSFLIGSALAWIL 93 (292)
Q Consensus 17 Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ipv~~~---ls~~ig~~lg~lv 93 (292)
.+++...|.++|.-..+-+ .+...|+++-.|. +++-+|+.-+..++.+ .|++++ +-.+.-.++.+..
T Consensus 250 ~v~vsi~gLi~aLtPf~~l--pgs~elgtv~lY~-----~v~vias~Ad~~~i~t---aP~~i~~gf~il~~h~~v~f~~ 319 (384)
T COG5505 250 LVLVSITGLIIALTPFERL--PGSQELGTVLLYL-----FVVVIASPADLRLIVT---APLIILFGFIILISHLAVSFAA 319 (384)
T ss_pred ehHHHHHHHHHHhCccccC--CchhhhhHHHHHH-----HHHHhccchhHHHHHh---hhHHHHHHHHHHHHHHHHHHHH
Confidence 4566777887773222222 3455677666654 4566777756666666 455543 3334446778888
Q ss_pred HHHhcCCCCccceeeeeeccCCcchhHHHHHHhhh
Q 022753 94 IKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVC 128 (292)
Q Consensus 94 ~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~aLc 128 (292)
+|++|.+-+.- ...+..|.|..--+=+.|.+
T Consensus 320 ~KlF~~dL~~i----~~AslAniGG~~sAp~~A~A 350 (384)
T COG5505 320 GKLFRVDLEEI----LLASLANIGGPTSAPAMAIA 350 (384)
T ss_pred HHHHHhHHHHH----HHHHHhccCCccchhHHHhh
Confidence 89999874443 34667777755544333433
No 63
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=21.03 E-value=1.7e+02 Score=20.10 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=17.8
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022753 66 YQSLISLWFMPVNILLSFLIGSALAWILIKITR 98 (292)
Q Consensus 66 ~~~l~~lw~ipv~~~ls~~ig~~lg~lv~~i~~ 98 (292)
.+++.++.|-.+..++-.++|+.++..+.+..+
T Consensus 8 ~~~ii~~lP~iv~AilIl~vG~~va~~v~~~~~ 40 (53)
T PF05552_consen 8 LDQIIAYLPNIVGAILILIVGWWVAKFVRKLVR 40 (53)
T ss_dssp -----GGHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667766666666666666666666665543
No 64
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=20.98 E-value=8e+02 Score=24.08 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=52.9
Q ss_pred HHHHHHHH-HHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHH----HHHHHHHHHHHHHHHH
Q 022753 17 VLLVTALG-LVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFM----PVNILLSFLIGSALAW 91 (292)
Q Consensus 17 Vlli~~~G-~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~i----pv~~~ls~~ig~~lg~ 91 (292)
-..++-+| .+.. -.|+++ +......-|-+-.+|+.++--+-+- +..++.++..= -..+..++++|+.+++
T Consensus 34 a~v~iy~gamff~--t~Glfs--~~S~~y~~v~n~llpamI~lmLlqc-d~Rki~Klg~rll~ifli~sv~~vlGfIl~y 108 (384)
T COG5505 34 AAVIIYAGAMFFT--TVGLFS--VESPVYDTVWNYLLPAMIPLMLLQC-DVRKIFKLGRRLLFIFLISSVGTVLGFILAY 108 (384)
T ss_pred HHHHHHHHHHHHh--hccccc--ccCcHHHHHHHHHHHHHHHHHHHHc-cHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 33444444 2334 589995 5666677788889999999888765 78887776544 3344466777777777
Q ss_pred HHHHHhcC
Q 022753 92 ILIKITRT 99 (292)
Q Consensus 92 lv~~i~~~ 99 (292)
.+.+-+..
T Consensus 109 p~~ksf~g 116 (384)
T COG5505 109 PLLKSFIG 116 (384)
T ss_pred HHHhhhcc
Confidence 77776665
No 65
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.84 E-value=1.2e+02 Score=25.70 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 022753 78 NILLSFLIGSALAWILIKITRT 99 (292)
Q Consensus 78 ~~~ls~~ig~~lg~lv~~i~~~ 99 (292)
++++..++|.++|++++|+++.
T Consensus 10 ~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 10 YALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHcch
Confidence 3456678889999999998874
No 66
>COG0679 Predicted permeases [General function prediction only]
Probab=20.73 E-value=7.1e+02 Score=23.38 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHH--HHHHHHHHHHHHH
Q 022753 17 VLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILL--SFLIGSALAWILI 94 (292)
Q Consensus 17 Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~lw~ipv~~~l--s~~ig~~lg~lv~ 94 (292)
.+.-..+|..++ ..|+--++....--+..-....||-++. ++-++......+...-.+.... -.++.=+++|++.
T Consensus 170 ~i~a~i~g~~~~--~~~i~lP~~~~~~~~~l~~a~~pl~li~-lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~ 246 (311)
T COG0679 170 LIIALILGLLLN--LLGISLPAPLDTAVDLLASAASPLALIA-LGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVA 246 (311)
T ss_pred HHHHHHHHHHHH--HcCCCCcHHHHHHHHHHHHhhhhHHHHH-HhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 344455566555 5555555555555555556677776543 3333333333333222222223 3677778888888
Q ss_pred HHhcCCCCccceeee
Q 022753 95 KITRTPPHLQGLVIG 109 (292)
Q Consensus 95 ~i~~~p~~~~g~~i~ 109 (292)
++++.+...+...+.
T Consensus 247 ~~~~l~~~~~~v~vl 261 (311)
T COG0679 247 KLLGLSGLALQVLVL 261 (311)
T ss_pred HHcCCChHHHHHHHH
Confidence 888888777755444
No 67
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=20.65 E-value=91 Score=20.27 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=15.5
Q ss_pred hhhhcChhHHHHHHHHHHhh
Q 022753 252 LKMIFAPSTIAAVLCLFECL 271 (292)
Q Consensus 252 l~~~~~Pptia~ilg~ivG~ 271 (292)
.+.+-+|.+.|.+.+++||-
T Consensus 11 WhDLAAP~iagIi~s~iv~w 30 (35)
T PF13940_consen 11 WHDLAAPIIAGIIASLIVGW 30 (35)
T ss_pred HHHhHhHHHHHHHHHHHHHH
Confidence 36778888888888888873
No 68
>PF06899 WzyE: WzyE protein; InterPro: IPR010691 This family consists of several WzyE proteins, which appear to be specific to Enterobacteria. Members of this family are described as putative ECA polymerases this has been found to be incorrect []. The function of this family is unknown.; GO: 0016021 integral to membrane
Probab=20.41 E-value=1.5e+02 Score=29.86 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=27.9
Q ss_pred hccCCCChhHHhHhhHHHHHHHhhHHHHHHhhcc
Q 022753 30 DRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAET 63 (292)
Q Consensus 30 ~r~gil~~~~~k~LsklV~~vflP~LiF~~La~s 63 (292)
++..+++.+.....-|--+|.++||++..-.-+.
T Consensus 143 ~Ysqifs~~v~gvAlkrffYffiPAmLvvyfL~~ 176 (448)
T PF06899_consen 143 SYSQIFSSDVSGVALKRFFYFFIPAMLVVYFLKQ 176 (448)
T ss_pred hHhHHHhhccccHHHHHHHHHHHHHHHHhheecc
Confidence 5677888888777888899999999988776665
No 69
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=20.31 E-value=34 Score=36.25 Aligned_cols=96 Identities=20% Similarity=0.311 Sum_probs=57.1
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCccceeeeeeccCCcchhHHHHHHhhhhcCCCCCCCchhhhh
Q 022753 66 YQSLISLWFMPVNILLSFLIGSALAWILIKITRT--PPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSS 143 (292)
Q Consensus 66 ~~~l~~lw~ipv~~~ls~~ig~~lg~lv~~i~~~--p~~~~g~~i~~~~fgN~g~LpL~iv~aLc~~~~~pfg~~~~c~~ 143 (292)
-++.-+||+..+.+ .+ .+++...+.-.+. .-...|+ +.+|.++=...+|+.+++|..++. .| -+.-.+
T Consensus 438 YKeVP~WWf~~ili-~s----~~l~~~~~~~~~~~~q~PwWg~-~va~~ia~vf~iPigii~AtTNq~---~G-LNiitE 507 (761)
T KOG2262|consen 438 YKEVPDWWFLAILI-VS----LGLGLAACEGYKTQVQLPWWGL-LVACAIAFVFTIPIGIIQATTNQT---PG-LNIITE 507 (761)
T ss_pred hccCcHHHHHHHHH-HH----HHHHhhheeeecccccCchHHH-HHHHHHHHHHhccHHHhhhhccCC---cc-HHHHHH
Confidence 46677889886665 33 3334443433332 2234444 455778888899999999987663 22 122223
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHhcc
Q 022753 144 YGKAYASLSMAVGAIYIWTYVYYVMSLY 171 (292)
Q Consensus 144 ~g~aYv~l~~~~~~i~~Wt~g~~ll~~~ 171 (292)
.=+.|+.=..=+..+++-+|||..|+..
T Consensus 508 ~i~Gy~~PgrPiAn~~FK~yGyism~Qa 535 (761)
T KOG2262|consen 508 YIIGYIYPGRPIANLCFKTYGYISMTQA 535 (761)
T ss_pred HHHHhhcCCchHHHHHHHHhchhhHHHH
Confidence 3333443334456678899999888654
No 70
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=20.17 E-value=88 Score=31.15 Aligned_cols=37 Identities=27% Similarity=0.584 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccee
Q 022753 71 SLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLV 107 (292)
Q Consensus 71 ~lw~ipv~~~ls~~ig~~lg~lv~~i~~~p~~~~g~~ 107 (292)
++|...+..++.+++-+++=|++.++++.|.+.++++
T Consensus 40 Sl~~lv~~~ii~lvv~~~l~~~l~~v~~~~~~~~~w~ 76 (400)
T COG3071 40 SLTTLVIFLIIALVVLYLLEWLLRRVLRTPAHTRGWF 76 (400)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4666777777888999999999999999999888884
Done!