Query 022753
Match_columns 292
No_of_seqs 203 out of 495
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 10:33:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 94.6 0.41 1.4E-05 44.5 12.5 108 16-128 174-282 (332)
2 3zux_A Transporter, ASBTNM; tr 28.0 3.4E+02 0.012 24.5 12.6 98 49-159 46-147 (332)
3 1zcd_A Na(+)/H(+) antiporter 1 13.2 67 0.0023 30.4 1.5 96 36-131 248-352 (388)
4 4b19_A PEPA1; toxin, toxin apo 12.9 99 0.0034 18.7 1.6 17 252-268 4-20 (30)
5 2kxa_A Haemagglutinin HA2 chai 12.9 1.1E+02 0.0037 18.3 1.8 17 260-276 2-18 (30)
6 2nwl_A GLTPH, glutamate sympor 11.0 4.5E+02 0.016 24.7 6.6 52 50-101 56-111 (422)
7 2l34_A TYRO protein tyrosine k 9.6 1.4E+02 0.0047 18.2 1.5 11 262-272 7-17 (33)
8 1q90_G Cytochrome B6F complex 8.2 1.5E+02 0.005 18.7 1.2 11 264-274 6-16 (37)
9 1waz_A MERF; protein structure 7.0 2.1E+02 0.0073 18.8 1.6 18 17-37 5-22 (46)
10 2cq8_A 10-formyltetrahydrofola 5.9 2.3E+02 0.0079 21.7 1.6 34 237-270 61-96 (110)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=94.56 E-value=0.41 Score=44.49 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHhHhhHHHHHHHhhHHHHHHhhccCCcchhhhh-hHHHHHHHHHHHHHHHHHHHHH
Q 022753 16 KVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL-WFMPVNILLSFLIGSALAWILI 94 (292)
Q Consensus 16 ~Vlli~~~G~~la~~r~gil~~~~~k~LsklV~~vflP~LiF~~La~sit~~~l~~l-w~ipv~~~ls~~ig~~lg~lv~ 94 (292)
.+++-.++|.++.....++ -+...+.+.++-. ..+=..+....+.+ .+.+.+. +.+.+..++...+++++||.++
T Consensus 174 ~vllP~~lG~l~r~~~~~~-~~~~~~~l~~~s~-~~illiv~~~~~~~--~~~~~~~~~~v~~~~~l~~~~~~~lg~~~~ 249 (332)
T 3zux_A 174 MVLLPIVLGLIVHKVLGSK-TEKLTDALPLVSV-AAIVLIIGAVVGAS--KGKIMESGLLIFAVVVLHNGIGYLLGFFAA 249 (332)
T ss_dssp HTHHHHHHHHHHHHHHGGG-GHHHHTTHHHHHH-HHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHH-HHHHHHhHHHHHhh--hHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888776321222 1222333333221 11112222223322 3333322 2233334566788999999999
Q ss_pred HHhcCCCCccceeeeeeccCCcchhHHHHHHhhh
Q 022753 95 KITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVC 128 (292)
Q Consensus 95 ~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv~aLc 128 (292)
|.+|.|++.+..+...|+..|+ .+++++..+.+
T Consensus 250 r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~F 282 (332)
T 3zux_A 250 KWTGLPYDAQKALTIEVGMQNS-GLAAALAAAHF 282 (332)
T ss_dssp HHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHHS
T ss_pred HHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHHc
Confidence 9999998887776666888998 47777766654
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=28.00 E-value=3.4e+02 Score=24.51 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=54.9
Q ss_pred HHHhhHHHHHHhhccCCcchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccceeeeeeccCCcchhHHHHH
Q 022753 49 YVFNPALIGSNLAETITYQSLI----SLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIV 124 (292)
Q Consensus 49 ~vflP~LiF~~La~sit~~~l~----~lw~ipv~~~ls~~ig~~lg~lv~~i~~~p~~~~g~~i~~~~fgN~g~LpL~iv 124 (292)
...+..++| ..+-+++.+++. +++...+..+...++.=+++|.+++.+..|+.....++.++..+-...-.+ .
T Consensus 46 ~~~l~~~mf-~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v--~ 122 (332)
T 3zux_A 46 PWLLGIIMF-GMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNV--M 122 (332)
T ss_dssp HHHHHHHHH-HHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHH--H
T ss_pred HHHHHHHHH-HHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHH--H
Confidence 345554444 555566888887 334444445566777778999999998877765544443333333332221 2
Q ss_pred HhhhhcCCCCCCCchhhhhhhHHHHHHHHHHhhHH
Q 022753 125 PAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIY 159 (292)
Q Consensus 125 ~aLc~~~~~pfg~~~~c~~~g~aYv~l~~~~~~i~ 159 (292)
..+++ || .+.++..+.++..++-+.
T Consensus 123 t~~a~------Gd----~~la~~~~~~stll~~~~ 147 (332)
T 3zux_A 123 TYLAR------GN----VALSVAVTSVSTLTSPLL 147 (332)
T ss_dssp HHHTT------CC----HHHHHHHHHHHHHHHHHH
T ss_pred HHHhC------CC----HHHHHHHHHHHHHHHHHH
Confidence 33322 22 245566666666555444
No 3
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=13.23 E-value=67 Score=30.41 Aligned_cols=96 Identities=17% Similarity=0.278 Sum_probs=57.8
Q ss_pred ChhHHhHhhHHHHHHHhhHHHHHHhhccCCcc---hhhhh--hHHHHHHHHHHHHH-HHHHHHHHHHh--cCCCCcc-ce
Q 022753 36 GHSVTHSLNNLVFYVFNPALIGSNLAETITYQ---SLISL--WFMPVNILLSFLIG-SALAWILIKIT--RTPPHLQ-GL 106 (292)
Q Consensus 36 ~~~~~k~LsklV~~vflP~LiF~~La~sit~~---~l~~l--w~ipv~~~ls~~ig-~~lg~lv~~i~--~~p~~~~-g~ 106 (292)
.++-.+.+..++.++++|..-|.+.+=+++.. .+.+. |-+.+..++.=.+| ++.+|+..|.. +.|+..+ +.
T Consensus 248 ~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~ 327 (388)
T 1zcd_A 248 AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQ 327 (388)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHH
Confidence 45567789999999999999999999888763 33221 11112222333333 33355655543 5666543 34
Q ss_pred eeeeeccCCcchhHHHHHHhhhhcC
Q 022753 107 VIGCCSAGNMGNLLLIIVPAVCEES 131 (292)
Q Consensus 107 ~i~~~~fgN~g~LpL~iv~aLc~~~ 131 (292)
..+.+..+|+++.-=.++..+.-++
T Consensus 328 ~~~vg~L~gigftmsL~Ia~laf~~ 352 (388)
T 1zcd_A 328 IMVVGILCGIGFTMSIFIASLAFGS 352 (388)
T ss_dssp GTTHHHHTTCCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhccchHHHHHHHHHhccC
Confidence 4555666888875555556665443
No 4
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=12.91 E-value=99 Score=18.68 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=14.1
Q ss_pred hhhhcChhHHHHHHHHH
Q 022753 252 LKMIFAPSTIAAVLCLF 268 (292)
Q Consensus 252 l~~~~~Pptia~ilg~i 268 (292)
+-++++|.+.|++++++
T Consensus 4 fv~iia~visGcivalF 20 (30)
T 4b19_A 4 FVHIIAPVISGCAIAFF 20 (30)
T ss_dssp GTSSTTTTHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHH
Confidence 35789999999999875
No 5
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=12.87 E-value=1.1e+02 Score=18.32 Aligned_cols=17 Identities=12% Similarity=-0.080 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhhhhh
Q 022753 260 TIAAVLCLFECLLQFYA 276 (292)
Q Consensus 260 tia~ilg~ivG~vp~l~ 276 (292)
+.|||.|||.|.-+-+.
T Consensus 2 lFGAIAGfieggW~gmi 18 (30)
T 2kxa_A 2 LFGAIAGFIEGGWTGMI 18 (30)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcCccccc
Confidence 46899999998766553
No 6
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=11.01 E-value=4.5e+02 Score=24.70 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=37.7
Q ss_pred HHhhHHHHHHhhccCC-c--chhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022753 50 VFNPALIGSNLAETIT-Y--QSLISL-WFMPVNILLSFLIGSALAWILIKITRTPP 101 (292)
Q Consensus 50 vflP~LiF~~La~sit-~--~~l~~l-w~ipv~~~ls~~ig~~lg~lv~~i~~~p~ 101 (292)
...|.|+|.++...+. . +++.++ +...++..+++.++.++|.+++.++++-.
T Consensus 56 miv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~ 111 (422)
T 2nwl_A 56 MLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGA 111 (422)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567788888887764 4 444443 44566677899999999999999998653
No 7
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=9.59 E-value=1.4e+02 Score=18.24 Aligned_cols=11 Identities=9% Similarity=-0.052 Sum_probs=5.7
Q ss_pred HHHHHHHHhhh
Q 022753 262 AAVLCLFECLL 272 (292)
Q Consensus 262 a~ilg~ivG~v 272 (292)
+++.|+++|.+
T Consensus 7 gaIaGIVvgdi 17 (33)
T 2l34_A 7 GVLAGIVVGDL 17 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred ceEEeEeHHHH
Confidence 34555555543
No 8
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=8.15 E-value=1.5e+02 Score=18.72 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=7.0
Q ss_pred HHHHHHhhhhh
Q 022753 264 VLCLFECLLQF 274 (292)
Q Consensus 264 ilg~ivG~vp~ 274 (292)
+.|++.|+||-
T Consensus 6 L~GIVlGlipv 16 (37)
T 1q90_G 6 LCGIVLGLVPV 16 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHhhHHH
Confidence 45666777764
No 9
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=7.01 E-value=2.1e+02 Score=18.84 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhccCCCCh
Q 022753 17 VLLVTALGLVLAIDRIDLLGH 37 (292)
Q Consensus 17 Vlli~~~G~~la~~r~gil~~ 37 (292)
|++..++|. .| -.|++|-
T Consensus 5 ViL~g~vGL-sa--~vgyLDy 22 (46)
T 1waz_A 5 VILLGVVGL-SA--LTGYLDY 22 (46)
T ss_dssp HHHHHHHHH-HH--CCSCCCC
T ss_pred ehhHHHhhH-HH--HHHHHHH
Confidence 445667775 44 6888873
No 10
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=5.86 E-value=2.3e+02 Score=21.75 Aligned_cols=34 Identities=9% Similarity=0.296 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhh--hhhhhhhcChhHHHHHHHHHHh
Q 022753 237 DKMRQRINKFTE--KIDLKMIFAPSTIAAVLCLFEC 270 (292)
Q Consensus 237 ~k~~~~~~~~~~--~~~l~~~~~Pptia~ilg~ivG 270 (292)
-|+..++|.-+. .++++.+++-||++.+...+..
T Consensus 61 ~rLv~~ir~~~g~v~l~l~~Lf~~pTl~~lA~~l~~ 96 (110)
T 2cq8_A 61 VRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVR 96 (110)
T ss_dssp HHHHHHHHHHHTSCCCCHHHHHHCCBHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHhCCCHHHHHHHHHH
Confidence 466666666543 4457799999999999988763
Done!