Query 022753
Match_columns 292
No_of_seqs 203 out of 495
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 10:33:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022753.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022753hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 9.3 1.2E+02 0.009 16.4 2.6 21 144-164 2-22 (30)
2 d1v54g_ f.23.2.1 (G:) Mitochon 8.4 94 0.0068 21.3 2.3 21 39-59 12-32 (84)
3 d2nwwa1 f.49.1.1 (A:12-416) Pr 7.6 5.6E+02 0.041 21.1 9.9 52 50-101 45-100 (405)
4 d1q90g_ f.23.26.1 (G:) PetG su 7.5 80 0.0058 17.4 1.2 13 264-276 6-18 (30)
5 d2e74d2 f.23.12.1 (D:12-45) IS 4.8 2.3E+02 0.017 15.8 2.2 25 253-277 5-29 (34)
6 d1jb0f_ f.23.16.1 (F:) Subunit 4.5 2.1E+02 0.016 21.3 2.5 43 125-168 40-86 (141)
7 d1vqza1 d.224.1.3 (A:242-329) 3.8 2.1E+02 0.015 19.0 1.9 30 241-270 59-88 (88)
8 d2r6gf2 f.58.1.1 (F:261-504) M 3.8 4.4E+02 0.032 19.8 4.3 34 75-108 24-58 (244)
9 d1g8fa3 c.37.1.15 (A:390-511) 3.5 3.1E+02 0.023 19.7 2.7 30 100-129 1-32 (122)
10 d1oede_ f.36.1.1 (E:) Acetylch 3.5 2.4E+02 0.018 21.7 2.2 16 46-61 4-19 (260)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.31 E-value=1.2e+02 Score=16.36 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHH
Q 022753 144 YGKAYASLSMAVGAIYIWTYV 164 (292)
Q Consensus 144 ~g~aYv~l~~~~~~i~~Wt~g 164 (292)
..++|++++.-+-.++++.+-
T Consensus 2 e~i~yv~ifac~i~lfffaif 22 (30)
T d2axtt1 2 ETITYVFIFACIIALFFFAIF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHHHHHHHHH
Confidence 357899998877777776543
No 2
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.40 E-value=94 Score=21.34 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=12.5
Q ss_pred HHhHhhHHHHHHHhhHHHHHH
Q 022753 39 VTHSLNNLVFYVFNPALIGSN 59 (292)
Q Consensus 39 ~~k~LsklV~~vflP~LiF~~ 59 (292)
+.+.--++.+++.+||++...
T Consensus 12 ~~~lWkkis~~va~P~i~l~~ 32 (84)
T d1v54g_ 12 GARTWRFLTFGLALPSVALCT 32 (84)
T ss_dssp CHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555666667777665543
No 3
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.57 E-value=5.6e+02 Score=21.15 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=35.3
Q ss_pred HHhhHHHHHHhhccCC-cc--hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022753 50 VFNPALIGSNLAETIT-YQ--SLISLW-FMPVNILLSFLIGSALAWILIKITRTPP 101 (292)
Q Consensus 50 vflP~LiF~~La~sit-~~--~l~~lw-~ipv~~~ls~~ig~~lg~lv~~i~~~p~ 101 (292)
...+.|+|.++...+. ++ ++.+.. -...+.++++.++..+|++++..+++..
T Consensus 45 m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt~iA~~igl~~~~~~~pg~ 100 (405)
T d2nwwa1 45 MLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGA 100 (405)
T ss_dssp HHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3456778888877663 33 333332 3355566888999999999999988644
No 4
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.49 E-value=80 Score=17.39 Aligned_cols=13 Identities=8% Similarity=-0.013 Sum_probs=9.0
Q ss_pred HHHHHHhhhhhhh
Q 022753 264 VLCLFECLLQFYA 276 (292)
Q Consensus 264 ilg~ivG~vp~l~ 276 (292)
+.|++.|.||-.-
T Consensus 6 l~GivlGlipiTl 18 (30)
T d1q90g_ 6 LCGIVLGLVPVTI 18 (30)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhHHHhhHHHHH
Confidence 4677888888543
No 5
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.77 E-value=2.3e+02 Score=15.78 Aligned_cols=25 Identities=8% Similarity=-0.069 Sum_probs=18.9
Q ss_pred hhhcChhHHHHHHHHHHhhhhhhhh
Q 022753 253 KMIFAPSTIAAVLCLFECLLQFYAT 277 (292)
Q Consensus 253 ~~~~~Pptia~ilg~ivG~vp~l~~ 277 (292)
+++|+=-|.|++.|...|+.=|.-+
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvk 29 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHh
Confidence 4556666999999999998766544
No 6
>d1jb0f_ f.23.16.1 (F:) Subunit III of photosystem I reaction centre, PsaF {Synechococcus elongatus [TaxId: 32046]}
Probab=4.52 E-value=2.1e+02 Score=21.27 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=23.0
Q ss_pred HhhhhcCCCCC----CCchhhhhhhHHHHHHHHHHhhHHHHHHHHHHH
Q 022753 125 PAVCEESNSPF----GDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVM 168 (292)
Q Consensus 125 ~aLc~~~~~pf----g~~~~c~~~g~aYv~l~~~~~~i~~Wt~g~~ll 168 (292)
.+||+++|+|. |+-+...+--++=++|-+..| .+-|.==-+++
T Consensus 40 ~aLCG~DGLPHLIvdG~~~HaGef~iPg~lFLYIAG-wIGWaGR~YL~ 86 (141)
T d1jb0f_ 40 QALCGEDGLPHLVVDGRLSRAGDFLIPSVLFLYIAG-WIGWVGRAYLI 86 (141)
T ss_dssp TSEECTTSSBCBCCSSCGGGTTTTHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HhccCCCCCceeecCCCcccchhhhHHHHHHHHHhh-hhhhhhHHHHH
Confidence 57999999987 443434444444444433333 35565433343
No 7
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=3.81 E-value=2.1e+02 Score=19.00 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=22.0
Q ss_pred HHHHHHhhhhhhhhhcChhHHHHHHHHHHh
Q 022753 241 QRINKFTEKIDLKMIFAPSTIAAVLCLFEC 270 (292)
Q Consensus 241 ~~~~~~~~~~~l~~~~~Pptia~ilg~ivG 270 (292)
+.++.+++++++++.+.--+-.-++..++|
T Consensus 59 ~~i~~~L~~~~~~~Yf~~i~~ee~~~li~g 88 (88)
T d1vqza1 59 EDVLKALKTIDITRYFAGISREEIAEAVVG 88 (88)
T ss_dssp HHHHHHHTTSCGGGTSTTCCHHHHHHHHCC
T ss_pred HHHHHHHHhCCHHHHhCCCCHHHHHHHhcC
Confidence 456677788889988876666677776665
No 8
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.79 E-value=4.4e+02 Score=19.83 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCCCccceee
Q 022753 75 MPVNILLSFLIGSALAWILIKITR-TPPHLQGLVI 108 (292)
Q Consensus 75 ipv~~~ls~~ig~~lg~lv~~i~~-~p~~~~g~~i 108 (292)
-.+..+++..++..+|+.++..++ .+.+.|+++.
T Consensus 24 t~~~~~~~~~~~~~~~~~lA~~l~~~~~~~~~~~~ 58 (244)
T d2r6gf2 24 TVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYR 58 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHH
Confidence 344555667777777777777653 4445555443
No 9
>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.52 E-value=3.1e+02 Score=19.67 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=26.2
Q ss_pred CCCccceeeeeeccCCcc--hhHHHHHHhhhh
Q 022753 100 PPHLQGLVIGCCSAGNMG--NLLLIIVPAVCE 129 (292)
Q Consensus 100 p~~~~g~~i~~~~fgN~g--~LpL~iv~aLc~ 129 (292)
|++.+|+++...+.+|+| .+--++...+-+
T Consensus 1 Pr~kqgf~i~~tg~~~~gk~~ia~al~~~l~q 32 (122)
T d1g8fa3 1 PRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 32 (122)
T ss_dssp CGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCccceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 788999999999999998 788888788766
No 10
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.48 E-value=2.4e+02 Score=21.70 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=13.4
Q ss_pred HHHHHHhhHHHHHHhh
Q 022753 46 LVFYVFNPALIGSNLA 61 (292)
Q Consensus 46 lV~~vflP~LiF~~La 61 (292)
+++++.+||.+.+.++
T Consensus 4 Y~~~lilP~~li~~ls 19 (260)
T d1oede_ 4 YIINIIAPCVLISSLV 19 (260)
T ss_dssp HHHHHHTHHHHHHHHH
T ss_pred EEEhHHHHHHHHHHHH
Confidence 5788999999888775
Done!