BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022756
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 197 bits (502), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 105/195 (53%), Positives = 129/195 (66%), Gaps = 4/195 (2%)
Query: 85 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEG 144
F DFL GGV+AA+SKTA APIERVKLL+Q Q K + YKGI DC R K++G
Sbjct: 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHAS-KQISAEKQYKGIIDCVVRIPKEQG 65
Query: 145 IVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG-YWKWFAGNXXXXXXXXXX 203
++ WRGN ANVIRYFPTQALNFAFKD +K++F DR +W++FAGN
Sbjct: 66 FLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGAT 125
Query: 204 XXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGI 263
FVY LD+ARTRLA D K +R+F GL + K KSDG+ GLY+GFN+S GI
Sbjct: 126 SLCFVYPLDFARTRLAAD--VGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 183
Query: 264 IVYRGLYFGMYDSLK 278
I+YR YFG+YD+ K
Sbjct: 184 IIYRAAYFGVYDTAK 198
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 10/171 (5%)
Query: 85 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEG 144
FA + GG + A S P++ + + + G + G+G+C + K +G
Sbjct: 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAAD---VGKGAAQREFTGLGNCITKIFKSDG 168
Query: 145 IVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXX 204
+ L++G +V +A F D K + K+ W
Sbjct: 169 LRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVS- 227
Query: 205 XXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRG 255
Y D R R+ ++ +KG + + G VD +RK K +G ++G
Sbjct: 228 ----YPFDTVRRRMM--MQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKG 272
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 87 IDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEP--YKGIGDCFKRTMKDEG 144
+ +++ AV+ + P + V+ + M++SGR Y G DC+++ KDEG
Sbjct: 211 VSWMIAQTVTAVAGLVSYPFDTVR-----RRMMMQSGRKGADIMYTGTVDCWRKIAKDEG 265
Query: 145 IVALWRGNTANVIR 158
A ++G +NV+R
Sbjct: 266 PKAFFKGAWSNVLR 279
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 215 RTRLANDAKAAKK--GGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFG 272
R +L + A K E+Q+ G++D + K G +RG + + + L F
Sbjct: 30 RVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFA 89
Query: 273 MYDSLKPVVLTG 284
D K + L G
Sbjct: 90 FKDKYKQIFLGG 101
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 83/208 (39%), Gaps = 11/208 (5%)
Query: 87 IDFLMGGVSAAVSKTAAAPIE--RVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEG 144
+ FL G +A ++ P++ +V+L IQ + + + S Y+G+ ++ EG
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 145 IVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYW-KWFAGNXXXXXXXXXX 203
+L+ G A + R ++ D K+ + + G + AG+
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVA 122
Query: 204 XXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGI 263
D + R A+A GG R++ V+ Y+ + +GI GL++G + +
Sbjct: 123 Q-----PTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARN 174
Query: 264 IVYRGLYFGMYDSLKPVVLTGKLQVGTL 291
+ YD +K +L L L
Sbjct: 175 AIVNCAELVTYDLIKDTLLKANLMTDDL 202
>pdb|1FNS|H Chain H, Crystal Structure Of The Von Willebrand Factor (Vwf) A1
Domain I546v Mutant In Complex With The Function
Blocking Fab Nmc4
Length = 225
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 68 TASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAP 105
TA CV+ PA+ G +A+D+ G S VS P
Sbjct: 90 TARYYCVRDPADYGNYDYALDYWGQGTSVTVSSAKTTP 127
>pdb|1OAK|H Chain H, Crystal Structure Of The Von Willebrand Factor (Vwf) A1
Domain In Complex With The Function Blocking Nmc-4 Fab
Length = 223
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 68 TASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAP 105
TA CV+ PA+ G +A+D+ G S VS P
Sbjct: 90 TARYYCVRDPADYGNYDYALDYWGQGTSVTVSSAKTTP 127
>pdb|1ESP|A Chain A, Neutral Protease Mutant E144s
Length = 317
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 9/114 (7%)
Query: 82 FAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMK 141
+AG D+ + A AP++ N + +G S+ G GD T
Sbjct: 77 YAGKTYDYYKATFNRNSINDAGAPLKSTVHYGSNYNNAFWNG--SQMVYGDGDGVTFTSL 134
Query: 142 DEGIVALWRG-------NTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWK 188
GI + N++N+I + ALN A D F L F +R+ W+
Sbjct: 135 SGGIDVIGHSLTHAVTENSSNLIYQNESGALNEAISDIFGTLVEFYDNRNPDWE 188
>pdb|2RKC|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin
Length = 462
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 252 LYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQVGTL 291
L RG+N+S + + +G+Y G Y KP++ + + ++ L
Sbjct: 55 LGRGYNVSSIVTMTSQGMYGGTYLVEKPILSSKRSELSQL 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,096,572
Number of Sequences: 62578
Number of extensions: 311519
Number of successful extensions: 664
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 9
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)