Query 022756
Match_columns 292
No_of_seqs 240 out of 1792
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 10:36:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 2.6E-44 8.9E-49 317.7 14.0 232 25-283 55-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 2.3E-44 8E-49 317.2 11.7 236 25-281 58-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 1.2E-39 4.1E-44 287.1 19.9 198 83-283 5-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 2.4E-38 8.3E-43 279.5 18.4 192 87-285 3-196 (303)
5 3tgu_G UQCRQ, mitochondrial ub 57.0 15 0.0005 24.7 4.1 41 247-287 32-72 (81)
6 1pp9_G Ubiquinol-cytochrome C 47.7 27 0.00091 23.4 4.2 41 247-287 32-72 (81)
7 3cx5_H Cytochrome B-C1 complex 31.4 32 0.0011 23.7 2.5 41 247-287 42-82 (93)
8 3f2e_A SIRV coat protein; four 15.3 87 0.003 20.6 2.0 34 231-264 6-43 (100)
9 2acm_A Mucin-1; auto-catalytic 15.1 23 0.0008 22.1 -0.7 20 130-149 40-59 (66)
10 2vqe_H 30S ribosomal protein S 12.3 2E+02 0.007 21.1 3.6 44 208-251 3-46 (138)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.6e-44 Score=317.72 Aligned_cols=232 Identities=20% Similarity=0.300 Sum_probs=200.3
Q ss_pred ccccccCCChhhhhcccccccccccccccccccccccccccc--ccchhhhhcCccccCCchhHHHHHHHHHHHHHHHhh
Q 022756 25 QNIQDYERPTMYQRRGAYGNYSNAAFQYPIVSAATTDLSMVP--STASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTA 102 (292)
Q Consensus 25 ~~~~~~~g~~~~~r~~~~G~~~~~~~~~p~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~aG~~ag~~~~~i 102 (292)
+.+...||+++||| |..+++++..|. .++ .|. +..++.+..... ..+.+..+++|++||+++.++
T Consensus 55 ~~i~~~eG~~glyr----G~~~~l~~~~~~-----~~i-~f~~ye~~k~~~~~~~~---~~~~~~~~~ag~~ag~~~~~~ 121 (303)
T 2lck_A 55 LTMVRTEGPRSLYN----GLVAGLQRQMSF-----ASV-RIGLYDSVKQFYTKGSE---HAGIGSRLLAGSTTGALAVAV 121 (303)
T ss_dssp HHHHHHHCHHHHHS----SHHHHHHHHHHH-----HHH-TTTHHHHHHHHHSCCCS---SCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHc----CCHHHHHHHHHH-----HHH-HHHHHHHHHHHHhcCCc---CCcHHHHHHHHHHHHHHHHHH
Confidence 34555699999999 999999999998 666 666 666666543311 257789999999999999999
Q ss_pred hccHHHHHHHHHcCccccccCCCCCCCCCHHHHHchhhhccchhhhhccchHhHHHHhhhhhhhHhHHHHHHHHhccCCC
Q 022756 103 AAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKD 182 (292)
Q Consensus 103 ~~Pld~iktrlQ~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~ 182 (292)
++|+|+||+|+|++... ...+.|++.++++++|+++||++|||||+.|++++.+|+++++|.+||.+|+.+.+...
T Consensus 122 ~~Pld~vktrlq~~~~~----~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~ 197 (303)
T 2lck_A 122 AQPTDVVKVRFQAQARA----GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL 197 (303)
T ss_dssp SCHHHHHHHHHHHSCSC----CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS
T ss_pred cCcHHHHHHHHhccccc----CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999998632 11235899999999999999999999999999999999999999999999998865432
Q ss_pred CCCchhhhHhHhHHHHHHHHHHHHhhchHHHHHHHHHhccchhhcCCCcccCcHHHHHHHHHHhhchhhcccchhHHHHH
Q 022756 183 RDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVG 262 (292)
Q Consensus 183 ~~~~~~~~~~~~~~g~~ag~~a~~~~~P~d~vktr~q~~~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~l~~ 262 (292)
.. ......+++|++||++++++++|+|+||+|||++.. ..|.++++|+++|+++||++|||||+.|+++|
T Consensus 198 ~~---~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r 267 (303)
T 2lck_A 198 MT---DDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLR 267 (303)
T ss_dssp CC---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHH
T ss_pred CC---CchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-------cccCCHHHHHHHHHHHcChHHhhccHHHHHHH
Confidence 22 224568999999999999999999999999999754 46999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHhc
Q 022756 263 IIVYRGLYFGMYDSLKPVVLT 283 (292)
Q Consensus 263 ~~~~~~i~~~~ye~~k~~~~~ 283 (292)
.+|.+++.|.+||.+|+.+.+
T Consensus 268 ~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 268 LGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHHHHHHHHSCCCC
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.3e-44 Score=317.16 Aligned_cols=236 Identities=21% Similarity=0.307 Sum_probs=190.9
Q ss_pred ccccccCCChhhhhcccccccccccccccccccccccccccc--ccchhhhhcC-ccccC-CchhHHHHHHHHHHHHHHH
Q 022756 25 QNIQDYERPTMYQRRGAYGNYSNAAFQYPIVSAATTDLSMVP--STASAICVQA-PAEKG-FAGFAIDFLMGGVSAAVSK 100 (292)
Q Consensus 25 ~~~~~~~g~~~~~r~~~~G~~~~~~~~~p~~~~~~~~l~~~~--~~~~~~~~~~-~~~~~-~~~~~~~~~aG~~ag~~~~ 100 (292)
+.+...||.++||| |..+++++..|. .++ .|. +..+..+... ..++. ..+.+..+++|++||+++.
T Consensus 58 ~~i~~~eG~~glyr----G~~~~l~~~~~~-----~~~-~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~ 127 (297)
T 1okc_A 58 VRIPKEQGFLSFWR----GNLANVIRYFPT-----QAL-NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSL 127 (297)
T ss_dssp HHHHHHHCGGGGGT----TTHHHHHHHHHH-----HHH-HHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchhheec----ccHHHHHHHHHH-----HHH-HHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHH
Confidence 34555699999999 999999999998 666 565 5566533222 11111 1346788999999999999
Q ss_pred hhhccHHHHHHHHHcCccccccCCCCCCCCCHHHHHchhhhccchhhhhccchHhHHHHhhhhhhhHhHHHHHHHHhccC
Q 022756 101 TAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFK 180 (292)
Q Consensus 101 ~i~~Pld~iktrlQ~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 180 (292)
++++|+|+||+|+|++.... ...+.|+++++++++|+++||++|||||+.|++++.+|+++++|.+||.+|+.+.+.
T Consensus 128 ~~~~Pld~vktrlq~~~~~~---~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 128 CFVYPLDFARTRLAADVGKG---AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHHHHHHHHHHHHHHCCCSS---TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred HHhCcHHHHHHHHhccccCC---CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999975321 112458999999999999999999999999999999999999999999999977543
Q ss_pred CCCCCchhhhHhHhHHHHHHHHHHHHhhchHHHHHHHHHhccchhhcCCCcccCcHHHHHHHHHHhhchhhcccchhHHH
Q 022756 181 KDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISC 260 (292)
Q Consensus 181 ~~~~~~~~~~~~~~~~g~~ag~~a~~~~~P~d~vktr~q~~~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~l 260 (292)
.+ ......+++|++||++++++++|+|+||+|||++... ......|+++++|+++|+++||++|||||+.|++
T Consensus 205 ~~-----~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~--~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~ 277 (297)
T 1okc_A 205 KN-----VHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGR--KGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNV 277 (297)
T ss_dssp GC-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC--CGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHH
T ss_pred CC-----ccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCC--CCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHH
Confidence 21 2245678999999999999999999999999997541 1123579999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHH
Q 022756 261 VGIIVYRGLYFGMYDSLKPVV 281 (292)
Q Consensus 261 ~~~~~~~~i~~~~ye~~k~~~ 281 (292)
+|. +.+++.|.+||.+|+.+
T Consensus 278 ~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 278 LRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHH-HHHHHHHHHHHTC----
T ss_pred Hhh-ccceeeehHHHHHHhhC
Confidence 996 57899999999998754
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.2e-39 Score=287.07 Aligned_cols=198 Identities=56% Similarity=0.945 Sum_probs=169.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhccHHHHHHHHHcCccccccCCCCCCCCCHHHHHchhhhccchhhhhccchHhHHHHhhh
Q 022756 83 AGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPT 162 (292)
Q Consensus 83 ~~~~~~~~aG~~ag~~~~~i~~Pld~iktrlQ~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 162 (292)
.+.+..+++|++||+++.++++|+|+||+|+|++...... ...+.|+++++++++|+++||++|||||+.+++++.+|+
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQI-SAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSC-CGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccccc-ccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 4678899999999999999999999999999997642110 112358999999999999999999999999999999999
Q ss_pred hhhhHhHHHHHHHHhccC-CCCCCchhhhHhHhHHHHHHHHHHHHhhchHHHHHHHHHhccchhhcCCCcccCcHHHHHH
Q 022756 163 QALNFAFKDYFKRLFNFK-KDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYR 241 (292)
Q Consensus 163 ~~~~f~~ye~~k~~~~~~-~~~~~~~~~~~~~~~~g~~ag~~a~~~~~P~d~vktr~q~~~~~~~~~~~~~y~~~~~~~~ 241 (292)
++++|.+||.+|+.+... ...++........+++|++||++++++++|+|+||+|||++... .+....|.++++|++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~ 161 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK--GAAQREFTGLGNCIT 161 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS--STTTCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC--CCcCcCCCCHHHHHH
Confidence 999999999999954332 22222223456789999999999999999999999999998541 122457899999999
Q ss_pred HHHHhhchhhcccchhHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 022756 242 KTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLT 283 (292)
Q Consensus 242 ~i~~~eG~~glyrG~~~~l~~~~~~~~i~~~~ye~~k~~~~~ 283 (292)
+|+++||++|||||+.|+++|.+|.++++|.+||.+|+.+.+
T Consensus 162 ~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 162 KIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred HHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999997754
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.4e-38 Score=279.47 Aligned_cols=192 Identities=22% Similarity=0.389 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHcCcccccc--CCCCCCCCCHHHHHchhhhccchhhhhccchHhHHHHhhhhh
Q 022756 87 IDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKS--GRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQA 164 (292)
Q Consensus 87 ~~~~aG~~ag~~~~~i~~Pld~iktrlQ~~~~~~~~--~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 164 (292)
..+++|++||+++.++++|+|+||+|+|++...... ......|+++++++++|+++||++|||||+.+++++.+|+.+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 368899999999999999999999999998642110 011235899999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHhccCCCCCCchhhhHhHhHHHHHHHHHHHHhhchHHHHHHHHHhccchhhcCCCcccCcHHHHHHHHH
Q 022756 165 LNFAFKDYFKRLFNFKKDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTM 244 (292)
Q Consensus 165 ~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~~~P~d~vktr~q~~~~~~~~~~~~~y~~~~~~~~~i~ 244 (292)
++|.+||.+|+.+.+..+. ......+++|++||++++++++|+|+||+|||++... .....|.++++|+++|+
T Consensus 83 i~f~~ye~~k~~~~~~~~~----~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---~~~~~~~~~~~~~~~i~ 155 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSEH----AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIA 155 (303)
T ss_dssp HTTTHHHHHHHHHSCCCSS----CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC---CCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcC----CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc---CCCCCCCCHHHHHHHHH
Confidence 9999999999988654221 2356789999999999999999999999999998641 23457999999999999
Q ss_pred HhhchhhcccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCC
Q 022756 245 KSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGK 285 (292)
Q Consensus 245 ~~eG~~glyrG~~~~l~~~~~~~~i~~~~ye~~k~~~~~~~ 285 (292)
++||++|||||+.|+++|.+|.+++.|.+||.+|+.+.+..
T Consensus 156 ~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999987643
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=56.97 E-value=15 Score=24.72 Aligned_cols=41 Identities=12% Similarity=0.036 Sum_probs=33.3
Q ss_pred hchhhcccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCC
Q 022756 247 DGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQ 287 (292)
Q Consensus 247 eG~~glyrG~~~~l~~~~~~~~i~~~~ye~~k~~~~~~~~~ 287 (292)
.|+...+|-+...++..+|..++.+.+|+..++.-...+.+
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rK 72 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRK 72 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46666777788889999999999999999999887664443
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=47.73 E-value=27 Score=23.43 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=33.6
Q ss_pred hchhhcccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCC
Q 022756 247 DGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQ 287 (292)
Q Consensus 247 eG~~glyrG~~~~l~~~~~~~~i~~~~ye~~k~~~~~~~~~ 287 (292)
.|+...+|-+.-.++..+|..++.+.+|+..++.....+.+
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rK 72 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRK 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCC
Confidence 46777777788889999999999999999999888664444
No 7
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=31.40 E-value=32 Score=23.73 Aligned_cols=41 Identities=10% Similarity=0.172 Sum_probs=34.2
Q ss_pred hchhhcccchhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCC
Q 022756 247 DGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQ 287 (292)
Q Consensus 247 eG~~glyrG~~~~l~~~~~~~~i~~~~ye~~k~~~~~~~~~ 287 (292)
.|+...+|-+.-+++..+|..++.+.+|+..++.....+.+
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l~~K 82 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLYSK 82 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTSG
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHHhcc
Confidence 57788888888899999999999999999999887654443
No 8
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=15.28 E-value=87 Score=20.59 Aligned_cols=34 Identities=18% Similarity=0.500 Sum_probs=23.9
Q ss_pred cccCcHHHHHHHHHHhhch----hhcccchhHHHHHHH
Q 022756 231 RQFNGLVDVYRKTMKSDGI----AGLYRGFNISCVGII 264 (292)
Q Consensus 231 ~~y~~~~~~~~~i~~~eG~----~glyrG~~~~l~~~~ 264 (292)
.++.++-+-+..++.+.|+ |..|.|++..+.|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 4566666777777888876 558889888877764
No 9
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=15.11 E-value=23 Score=22.06 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=15.8
Q ss_pred CCHHHHHchhhhccchhhhh
Q 022756 130 KGIGDCFKRTMKDEGIVALW 149 (292)
Q Consensus 130 ~~~~~~~~~i~~~eG~~gly 149 (292)
+++.+.+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 35677888899999888875
No 10
>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ...
Probab=12.25 E-value=2e+02 Score=21.14 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=30.7
Q ss_pred hchHHHHHHHHHhccchhhcCCCcccCcHHHHHHHHHHhhchhh
Q 022756 208 VYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAG 251 (292)
Q Consensus 208 ~~P~d~vktr~q~~~~~~~~~~~~~y~~~~~~~~~i~~~eG~~g 251 (292)
+.|+.-+-||++......+..-...++.+...+.+|+.+||+-+
T Consensus 3 ~d~iad~ltrIrNA~~~~k~~V~iP~Sk~~~~il~iL~~eGyI~ 46 (138)
T 2vqe_H 3 TDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIK 46 (138)
T ss_dssp SCHHHHHHHHHHHHHHTTCSCCCCBCCHHHHHHHHHHHHTTSSS
T ss_pred cchHHHHHHHhHHHHHcCCCEEEecCcHHHHHHHHHHHHcCcce
Confidence 45777777888776554333334567778888999999999643
Done!