Query 022757
Match_columns 292
No_of_seqs 248 out of 2061
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0647 NagD Predicted sugar p 100.0 3.9E-54 8.4E-59 353.5 27.3 265 2-289 1-266 (269)
2 KOG2882 p-Nitrophenyl phosphat 100.0 8.5E-54 1.8E-58 346.6 26.6 283 5-289 18-304 (306)
3 PLN02645 phosphoglycolate phos 100.0 2.9E-50 6.2E-55 345.0 32.5 288 5-292 24-311 (311)
4 PRK10444 UMP phosphatase; Prov 100.0 5.8E-48 1.3E-52 319.2 29.2 245 9-284 1-245 (248)
5 TIGR01452 PGP_euk phosphoglyco 100.0 7E-48 1.5E-52 326.3 29.6 275 8-284 1-279 (279)
6 TIGR01457 HAD-SF-IIA-hyp2 HAD- 100.0 3.5E-47 7.6E-52 316.2 29.3 249 9-284 1-249 (249)
7 TIGR01458 HAD-SF-IIA-hyp3 HAD- 100.0 3.5E-44 7.6E-49 299.4 29.2 251 9-290 1-256 (257)
8 KOG3040 Predicted sugar phosph 100.0 4.8E-43 1E-47 267.4 20.8 258 3-291 1-259 (262)
9 TIGR01456 CECR5 HAD-superfamil 100.0 5.7E-42 1.2E-46 294.8 23.6 271 11-288 2-320 (321)
10 TIGR01460 HAD-SF-IIA Haloacid 100.0 1E-39 2.2E-44 269.5 25.8 234 12-258 1-236 (236)
11 TIGR01459 HAD-SF-IIA-hyp4 HAD- 100.0 7.4E-34 1.6E-38 236.0 25.0 230 5-257 4-242 (242)
12 PF13344 Hydrolase_6: Haloacid 99.9 3.9E-25 8.5E-30 157.4 10.9 101 12-114 1-101 (101)
13 KOG1618 Predicted phosphatase 99.9 3E-24 6.5E-29 174.7 15.7 250 9-262 35-346 (389)
14 COG0546 Gph Predicted phosphat 99.9 6.4E-22 1.4E-26 162.0 9.5 130 152-290 90-219 (220)
15 PRK10748 flavin mononucleotide 99.9 2E-21 4.3E-26 161.0 10.9 125 152-288 114-238 (238)
16 PRK06769 hypothetical protein; 99.9 1.1E-20 2.3E-25 148.6 13.9 79 210-289 92-172 (173)
17 PRK13226 phosphoglycolate phos 99.9 1.2E-21 2.6E-26 161.5 8.5 128 153-289 97-225 (229)
18 TIGR01422 phosphonatase phosph 99.9 2.4E-21 5.1E-26 162.3 10.1 126 153-288 101-252 (253)
19 TIGR02253 CTE7 HAD superfamily 99.8 7.3E-21 1.6E-25 156.2 11.6 125 153-284 96-220 (221)
20 TIGR03351 PhnX-like phosphonat 99.8 3.5E-21 7.5E-26 158.0 9.3 127 153-288 89-219 (220)
21 PRK13288 pyrophosphatase PpaX; 99.8 3.2E-21 6.9E-26 157.5 8.5 128 153-290 84-212 (214)
22 PRK13478 phosphonoacetaldehyde 99.8 5.8E-21 1.3E-25 161.1 10.1 128 153-289 103-255 (267)
23 PLN03243 haloacid dehalogenase 99.8 1.1E-20 2.4E-25 157.8 10.4 124 153-288 111-234 (260)
24 TIGR00213 GmhB_yaeD D,D-heptos 99.8 1.3E-19 2.8E-24 143.3 15.6 71 210-286 105-176 (176)
25 PLN02770 haloacid dehalogenase 99.8 3.4E-21 7.3E-26 160.6 6.7 122 153-284 110-231 (248)
26 PRK10826 2-deoxyglucose-6-phos 99.8 7.7E-21 1.7E-25 156.1 8.4 125 152-286 93-217 (222)
27 TIGR01454 AHBA_synth_RP 3-amin 99.8 9.7E-21 2.1E-25 153.6 7.6 128 153-289 77-204 (205)
28 PRK08942 D,D-heptose 1,7-bisph 99.8 8.5E-19 1.9E-23 139.3 17.3 75 210-290 102-178 (181)
29 PRK13222 phosphoglycolate phos 99.8 2.7E-20 6E-25 153.3 8.9 130 153-291 95-224 (226)
30 PRK13223 phosphoglycolate phos 99.8 3.1E-20 6.8E-25 156.6 9.3 128 153-289 103-230 (272)
31 PF13242 Hydrolase_like: HAD-h 99.8 4.4E-20 9.6E-25 124.5 7.0 74 209-284 2-75 (75)
32 TIGR01449 PGP_bact 2-phosphogl 99.8 3.6E-20 7.8E-25 151.2 7.7 127 153-288 87-213 (213)
33 PLN02575 haloacid dehalogenase 99.8 1.6E-19 3.4E-24 156.2 10.8 121 153-285 218-338 (381)
34 PRK11587 putative phosphatase; 99.8 8.6E-20 1.9E-24 149.4 7.9 120 153-285 85-204 (218)
35 PLN02940 riboflavin kinase 99.8 1.2E-19 2.6E-24 159.6 8.0 122 153-285 95-217 (382)
36 TIGR02254 YjjG/YfnB HAD superf 99.8 9.9E-19 2.1E-23 143.8 12.9 125 153-288 99-224 (224)
37 COG1011 Predicted hydrolase (H 99.8 4.6E-19 1E-23 146.2 10.9 129 152-290 100-228 (229)
38 COG0637 Predicted phosphatase/ 99.8 4.5E-19 9.8E-24 144.9 10.6 130 154-290 89-218 (221)
39 PLN02779 haloacid dehalogenase 99.8 6E-19 1.3E-23 149.7 11.5 125 152-285 145-269 (286)
40 PRK09449 dUMP phosphatase; Pro 99.8 9.5E-19 2.1E-23 143.9 11.9 126 153-289 97-223 (224)
41 PRK10563 6-phosphogluconate ph 99.8 7.9E-20 1.7E-24 150.1 5.2 122 155-290 92-214 (221)
42 PRK13225 phosphoglycolate phos 99.8 5.6E-19 1.2E-23 148.5 9.1 125 153-290 144-269 (273)
43 PRK10530 pyridoxal phosphate ( 99.8 8E-18 1.7E-22 142.5 15.8 256 9-289 3-268 (272)
44 TIGR01662 HAD-SF-IIIA HAD-supe 99.7 2.8E-17 6.2E-22 123.7 13.0 47 210-256 84-131 (132)
45 KOG3085 Predicted hydrolase (H 99.7 1.3E-17 2.8E-22 134.3 9.9 103 154-262 116-219 (237)
46 PRK10513 sugar phosphate phosp 99.7 5E-19 1.1E-23 149.7 1.5 69 205-283 189-257 (270)
47 TIGR02252 DREG-2 REG-2-like, H 99.7 1.7E-17 3.6E-22 134.4 10.4 97 153-254 107-203 (203)
48 PRK10725 fructose-1-P/6-phosph 99.7 3.3E-18 7.1E-23 136.9 6.1 93 158-256 94-186 (188)
49 PRK06698 bifunctional 5'-methy 99.7 1.1E-17 2.4E-22 151.4 10.2 125 152-290 331-455 (459)
50 PRK01158 phosphoglycolate phos 99.7 5.4E-17 1.2E-21 134.1 13.5 218 9-289 3-226 (230)
51 COG0561 Cof Predicted hydrolas 99.7 6.1E-17 1.3E-21 136.5 13.7 67 8-80 2-69 (264)
52 PRK14988 GMP/IMP nucleotidase; 99.7 1.3E-17 2.7E-22 136.9 8.9 124 153-289 95-219 (224)
53 TIGR01656 Histidinol-ppas hist 99.7 1.5E-16 3.2E-21 121.9 14.2 48 210-258 100-147 (147)
54 PRK10976 putative hydrolase; P 99.7 5.6E-16 1.2E-20 130.8 18.1 57 9-68 2-59 (266)
55 PRK03669 mannosyl-3-phosphogly 99.7 1.3E-15 2.8E-20 128.8 18.1 234 6-288 4-264 (271)
56 TIGR01261 hisB_Nterm histidino 99.7 3.7E-16 7.9E-21 120.9 13.2 54 210-264 102-155 (161)
57 PRK15126 thiamin pyrimidine py 99.7 5.8E-17 1.3E-21 137.2 9.1 57 9-68 2-59 (272)
58 TIGR01428 HAD_type_II 2-haloal 99.7 1.8E-17 4E-22 133.7 5.7 100 153-258 94-194 (198)
59 TIGR01668 YqeG_hyp_ppase HAD s 99.7 3.7E-16 8E-21 122.5 12.4 56 210-265 90-145 (170)
60 PLN02919 haloacid dehalogenase 99.7 5.6E-17 1.2E-21 158.7 9.5 121 153-284 163-285 (1057)
61 PLN02887 hydrolase family prot 99.7 2.1E-15 4.6E-20 137.9 17.9 76 204-289 499-576 (580)
62 COG2179 Predicted hydrolase of 99.7 3.6E-16 7.8E-21 116.8 10.2 47 210-256 92-138 (175)
63 PRK09456 ?-D-glucose-1-phospha 99.7 4.3E-16 9.2E-21 125.7 11.4 110 153-266 86-195 (199)
64 TIGR01482 SPP-subfamily Sucros 99.7 1.1E-16 2.4E-21 131.7 7.4 69 205-283 142-210 (225)
65 TIGR01990 bPGM beta-phosphoglu 99.7 1.9E-17 4.1E-22 132.1 2.3 97 153-256 89-185 (185)
66 TIGR01487 SPP-like sucrose-pho 99.7 1.3E-15 2.9E-20 124.3 12.5 205 9-282 1-207 (215)
67 TIGR02009 PGMB-YQAB-SF beta-ph 99.7 4.9E-17 1.1E-21 129.7 3.8 95 153-255 90-185 (185)
68 TIGR01664 DNA-3'-Pase DNA 3'-p 99.7 1.4E-15 3.1E-20 118.4 11.8 45 210-254 107-160 (166)
69 TIGR02247 HAD-1A3-hyp Epoxide 99.7 3.7E-16 8E-21 127.3 8.8 109 152-265 95-205 (211)
70 PHA02597 30.2 hypothetical pro 99.6 4.3E-16 9.3E-21 125.5 7.8 118 153-286 76-196 (197)
71 COG0241 HisB Histidinol phosph 99.6 1.4E-14 3E-19 112.2 14.5 74 209-288 103-176 (181)
72 PLN02811 hydrolase 99.6 4.2E-16 9.2E-21 127.7 6.5 123 153-285 80-207 (220)
73 cd01427 HAD_like Haloacid deha 99.6 5.4E-15 1.2E-19 111.5 11.9 49 206-255 91-139 (139)
74 TIGR00099 Cof-subfamily Cof su 99.6 4.8E-14 1E-18 118.3 17.5 55 11-68 1-56 (256)
75 PRK09484 3-deoxy-D-manno-octul 99.6 4.9E-15 1.1E-19 117.6 10.8 69 211-289 95-169 (183)
76 TIGR01993 Pyr-5-nucltdase pyri 99.6 2.7E-15 5.9E-20 119.5 8.9 99 152-255 85-184 (184)
77 TIGR01486 HAD-SF-IIB-MPGP mann 99.6 2.5E-14 5.3E-19 120.0 13.4 55 11-68 1-56 (256)
78 PRK00192 mannosyl-3-phosphogly 99.6 3.3E-14 7.2E-19 120.3 14.0 57 9-68 4-61 (273)
79 TIGR01670 YrbI-phosphatas 3-de 99.6 2.4E-14 5.2E-19 110.4 10.7 62 211-282 75-136 (154)
80 TIGR01685 MDP-1 magnesium-depe 99.6 1.2E-14 2.7E-19 113.1 8.9 54 210-264 110-165 (174)
81 TIGR02726 phenyl_P_delta pheny 99.6 5E-14 1.1E-18 109.5 12.0 68 211-288 81-154 (169)
82 PF08282 Hydrolase_3: haloacid 99.6 1E-13 2.2E-18 115.7 14.2 65 209-283 183-247 (254)
83 TIGR01509 HAD-SF-IA-v3 haloaci 99.5 1.7E-14 3.7E-19 114.7 8.2 96 153-255 87-183 (183)
84 PRK05446 imidazole glycerol-ph 99.5 2.8E-13 6E-18 116.9 14.3 49 210-259 103-151 (354)
85 TIGR02463 MPGP_rel mannosyl-3- 99.5 1.1E-13 2.4E-18 113.5 11.1 65 11-80 1-66 (221)
86 TIGR02471 sucr_syn_bact_C sucr 99.5 4E-13 8.8E-18 111.3 13.7 199 11-264 1-207 (236)
87 PHA02530 pseT polynucleotide k 99.5 2.3E-13 5E-18 116.9 12.6 49 210-259 250-299 (300)
88 KOG2914 Predicted haloacid-hal 99.5 1.7E-13 3.7E-18 110.2 9.8 72 206-284 146-218 (222)
89 PLN02954 phosphoserine phospha 99.5 4.2E-13 9.1E-18 110.3 11.2 70 210-288 153-223 (224)
90 TIGR02461 osmo_MPG_phos mannos 99.5 3.2E-13 7E-18 110.7 9.8 55 11-68 1-55 (225)
91 TIGR00338 serB phosphoserine p 99.4 3.7E-13 8E-18 110.3 8.9 68 210-288 150-219 (219)
92 TIGR01548 HAD-SF-IA-hyp1 haloa 99.4 5.3E-13 1.1E-17 107.5 8.9 85 157-248 112-197 (197)
93 TIGR01485 SPP_plant-cyano sucr 99.4 1.2E-12 2.6E-17 109.3 10.7 65 11-79 3-71 (249)
94 PRK10187 trehalose-6-phosphate 99.4 1.5E-11 3.3E-16 103.3 16.7 69 210-289 172-241 (266)
95 TIGR01493 HAD-SF-IA-v2 Haloaci 99.4 1.3E-13 2.8E-18 108.9 3.5 74 170-248 102-175 (175)
96 TIGR01691 enolase-ppase 2,3-di 99.4 1.5E-12 3.2E-17 105.8 9.3 100 152-259 96-199 (220)
97 PF09419 PGP_phosphatase: Mito 99.4 6E-12 1.3E-16 96.7 11.0 47 8-54 40-90 (168)
98 TIGR01681 HAD-SF-IIIC HAD-supe 99.4 5.6E-12 1.2E-16 94.0 9.7 41 10-50 1-54 (128)
99 TIGR01672 AphA HAD superfamily 99.4 2E-11 4.4E-16 99.9 13.2 46 210-263 173-218 (237)
100 TIGR01484 HAD-SF-IIB HAD-super 99.3 3.6E-11 7.8E-16 97.4 13.5 47 205-252 156-202 (204)
101 TIGR01549 HAD-SF-IA-v1 haloaci 99.3 1.1E-12 2.4E-17 101.3 4.4 86 156-249 69-154 (154)
102 PRK11133 serB phosphoserine ph 99.3 1.2E-11 2.5E-16 106.3 8.8 70 209-289 245-316 (322)
103 PTZ00174 phosphomannomutase; P 99.3 5.6E-11 1.2E-15 99.1 11.7 53 9-64 5-58 (247)
104 PRK11009 aphA acid phosphatase 99.3 1.3E-10 2.9E-15 95.1 13.1 38 220-262 180-217 (237)
105 PRK12702 mannosyl-3-phosphogly 99.2 1.1E-10 2.3E-15 97.0 11.5 57 9-68 1-58 (302)
106 KOG3109 Haloacid dehalogenase- 99.2 2E-11 4.3E-16 95.5 5.6 88 170-259 117-208 (244)
107 PRK14502 bifunctional mannosyl 99.2 4.4E-10 9.6E-15 103.3 15.0 58 8-68 415-473 (694)
108 TIGR00685 T6PP trehalose-phosp 99.2 2.7E-09 5.8E-14 88.8 17.7 67 213-290 168-241 (244)
109 PF13419 HAD_2: Haloacid dehal 99.2 7.3E-12 1.6E-16 98.5 2.1 98 153-255 79-176 (176)
110 PRK13582 thrH phosphoserine ph 99.2 1.2E-10 2.6E-15 94.3 9.0 67 215-291 131-198 (205)
111 TIGR01663 PNK-3'Pase polynucle 99.2 2.4E-10 5.2E-15 103.6 11.4 40 210-250 262-305 (526)
112 PLN02382 probable sucrose-phos 99.1 9.1E-09 2E-13 91.6 17.5 54 208-264 171-227 (413)
113 COG1778 Low specificity phosph 99.1 5.4E-10 1.2E-14 82.9 7.6 61 4-67 3-74 (170)
114 PRK09552 mtnX 2-hydroxy-3-keto 99.0 6.2E-10 1.3E-14 91.1 7.4 65 218-290 150-214 (219)
115 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.0 8.7E-09 1.9E-13 83.1 13.7 47 211-258 146-192 (201)
116 PF08645 PNK3P: Polynucleotide 99.0 1.3E-09 2.8E-14 84.2 7.5 42 210-251 96-151 (159)
117 smart00577 CPDc catalytic doma 99.0 3.3E-09 7.1E-14 81.2 8.8 37 210-250 100-136 (148)
118 TIGR01686 FkbH FkbH-like domai 99.0 2E-09 4.3E-14 93.1 8.4 41 210-251 85-125 (320)
119 PTZ00445 p36-lilke protein; Pr 99.0 6.7E-09 1.5E-13 81.8 10.3 48 210-258 156-207 (219)
120 PLN02423 phosphomannomutase 99.0 6.9E-09 1.5E-13 86.2 10.6 52 9-64 6-59 (245)
121 PRK14501 putative bifunctional 98.9 2.4E-08 5.2E-13 95.7 14.7 70 207-289 652-721 (726)
122 PF05116 S6PP: Sucrose-6F-phos 98.8 1.5E-08 3.2E-13 84.3 9.0 194 9-263 2-212 (247)
123 TIGR01684 viral_ppase viral ph 98.8 5.7E-09 1.2E-13 86.7 6.3 69 8-79 125-197 (301)
124 TIGR03333 salvage_mtnX 2-hydro 98.8 1.8E-08 3.8E-13 82.2 7.0 64 219-290 147-210 (214)
125 PLN02580 trehalose-phosphatase 98.8 1.1E-06 2.4E-11 76.7 18.0 72 210-290 299-375 (384)
126 TIGR01489 DKMTPPase-SF 2,3-dik 98.8 2.1E-07 4.5E-12 74.1 12.7 39 208-250 145-183 (188)
127 TIGR02137 HSK-PSP phosphoserin 98.8 5.6E-08 1.2E-12 78.3 9.3 68 210-290 129-197 (203)
128 TIGR01689 EcbF-BcbF capsule bi 98.7 2.5E-08 5.4E-13 73.3 5.3 42 10-51 2-50 (126)
129 PF00702 Hydrolase: haloacid d 98.7 9.4E-08 2E-12 77.7 9.2 39 210-249 177-215 (215)
130 PHA03398 viral phosphatase sup 98.7 4.2E-08 9E-13 81.7 6.2 70 8-80 127-200 (303)
131 PLN02205 alpha,alpha-trehalose 98.7 1E-06 2.2E-11 85.0 16.4 55 8-65 595-654 (854)
132 smart00775 LNS2 LNS2 domain. T 98.7 3.5E-08 7.5E-13 76.1 5.2 51 11-64 1-66 (157)
133 COG4229 Predicted enolase-phos 98.6 9.2E-07 2E-11 67.5 11.2 106 151-260 103-209 (229)
134 PLN03017 trehalose-phosphatase 98.5 1.8E-05 4E-10 68.6 17.8 68 212-290 283-357 (366)
135 TIGR01488 HAD-SF-IB Haloacid D 98.5 4.1E-07 8.9E-12 71.7 7.0 38 210-248 140-177 (177)
136 COG0560 SerB Phosphoserine pho 98.5 9E-07 1.9E-11 71.7 8.7 44 210-254 142-185 (212)
137 TIGR01533 lipo_e_P4 5'-nucleot 98.4 9.1E-07 2E-11 73.8 7.4 69 8-76 74-170 (266)
138 PLN02151 trehalose-phosphatase 98.4 2.8E-05 6E-10 67.3 16.3 53 10-66 99-157 (354)
139 TIGR02244 HAD-IG-Ncltidse HAD 98.3 4.7E-06 1E-10 71.9 9.9 41 217-257 283-324 (343)
140 PRK10671 copA copper exporting 98.2 5.9E-06 1.3E-10 80.6 9.8 65 217-289 701-765 (834)
141 PF12689 Acid_PPase: Acid Phos 98.2 9.9E-06 2.2E-10 62.8 9.0 49 213-262 109-157 (169)
142 TIGR01511 ATPase-IB1_Cu copper 98.2 2.1E-05 4.5E-10 73.4 12.9 53 227-289 465-519 (562)
143 KOG2961 Predicted hydrolase (H 98.2 2.3E-05 4.9E-10 58.2 10.1 88 170-263 82-174 (190)
144 TIGR01525 ATPase-IB_hvy heavy 98.2 4.5E-05 9.8E-10 71.2 14.1 56 9-67 364-424 (556)
145 TIGR01512 ATPase-IB2_Cd heavy 98.2 2.4E-05 5.3E-10 72.5 12.3 60 221-289 418-479 (536)
146 PF06437 ISN1: IMP-specific 5' 98.1 0.00047 1E-08 59.2 16.8 58 8-65 146-206 (408)
147 COG3769 Predicted hydrolase (H 98.0 1.4E-05 3.1E-10 63.1 5.5 58 8-68 6-63 (274)
148 TIGR01522 ATPase-IIA2_Ca golgi 98.0 0.00021 4.6E-09 70.3 14.9 62 220-290 609-672 (884)
149 PF08235 LNS2: LNS2 (Lipin/Ned 98.0 3.1E-05 6.7E-10 58.9 7.1 44 11-57 1-56 (157)
150 TIGR01544 HAD-SF-IE haloacid d 97.9 0.00012 2.6E-09 61.3 10.6 33 215-248 196-230 (277)
151 COG4087 Soluble P-type ATPase 97.9 0.00028 6.2E-09 51.1 10.9 63 220-289 85-147 (152)
152 PF03767 Acid_phosphat_B: HAD 97.8 1.3E-05 2.7E-10 65.9 2.5 61 8-68 71-158 (229)
153 TIGR01675 plant-AP plant acid 97.8 4.3E-05 9.3E-10 62.1 5.2 60 9-68 77-163 (229)
154 PRK08238 hypothetical protein; 97.7 9.2E-05 2E-09 67.3 6.5 94 154-259 75-168 (479)
155 TIGR01680 Veg_Stor_Prot vegeta 97.7 0.00011 2.3E-09 61.0 5.9 60 9-68 101-188 (275)
156 TIGR01116 ATPase-IIA1_Ca sarco 97.6 0.0018 3.8E-08 64.1 14.3 60 220-289 622-683 (917)
157 TIGR01490 HAD-SF-IB-hyp1 HAD-s 97.6 5.1E-05 1.1E-09 61.1 3.1 45 208-253 151-195 (202)
158 PRK11590 hypothetical protein; 97.5 0.0021 4.6E-08 52.2 11.7 33 221-255 169-201 (211)
159 COG1877 OtsB Trehalose-6-phosp 97.4 0.0042 9.2E-08 51.8 12.6 57 8-67 17-80 (266)
160 PRK11033 zntA zinc/cadmium/mer 97.4 0.0013 2.9E-08 63.4 10.4 55 10-67 549-607 (741)
161 COG2503 Predicted secreted aci 97.3 0.00056 1.2E-08 55.1 5.6 60 9-68 79-166 (274)
162 KOG1615 Phosphoserine phosphat 97.2 0.0026 5.7E-08 49.6 8.4 33 212-247 159-191 (227)
163 PF02358 Trehalose_PPase: Treh 97.2 0.0024 5.3E-08 52.7 9.0 48 210-258 163-218 (235)
164 PLN03063 alpha,alpha-trehalose 97.2 0.024 5.3E-07 55.2 16.7 57 9-68 507-573 (797)
165 PF13419 HAD_2: Haloacid dehal 97.1 0.0046 9.9E-08 48.0 9.1 88 24-115 76-173 (176)
166 TIGR02468 sucrsPsyn_pln sucros 96.9 0.038 8.1E-07 54.7 15.2 59 14-79 777-840 (1050)
167 TIGR01428 HAD_type_II 2-haloal 96.9 0.014 3.1E-07 46.7 10.2 87 26-116 93-189 (198)
168 PF06888 Put_Phosphatase: Puta 96.8 0.024 5.1E-07 46.6 11.2 53 212-265 150-206 (234)
169 TIGR01106 ATPase-IIC_X-K sodiu 96.8 0.019 4.1E-07 57.5 12.5 48 18-68 561-608 (997)
170 TIGR01454 AHBA_synth_RP 3-amin 96.6 0.024 5.1E-07 45.7 9.8 89 24-116 74-172 (205)
171 TIGR02253 CTE7 HAD superfamily 96.5 0.025 5.4E-07 46.1 9.2 88 26-117 95-193 (221)
172 PLN02770 haloacid dehalogenase 96.5 0.03 6.4E-07 46.7 9.8 86 27-116 110-205 (248)
173 PRK13288 pyrophosphatase PpaX; 96.4 0.029 6.3E-07 45.5 9.4 87 26-116 83-179 (214)
174 PLN03243 haloacid dehalogenase 96.4 0.03 6.4E-07 47.0 9.4 86 27-116 111-206 (260)
175 PRK10826 2-deoxyglucose-6-phos 96.4 0.024 5.3E-07 46.3 8.7 86 27-116 94-189 (222)
176 TIGR01523 ATPase-IID_K-Na pota 96.4 0.046 1E-06 54.9 12.0 48 18-68 639-686 (1053)
177 TIGR01509 HAD-SF-IA-v3 haloaci 96.3 0.055 1.2E-06 42.4 9.9 86 25-115 85-180 (183)
178 TIGR01449 PGP_bact 2-phosphogl 96.3 0.046 1E-06 44.2 9.6 88 25-116 85-182 (213)
179 PRK14988 GMP/IMP nucleotidase; 96.3 0.036 7.9E-07 45.4 9.0 84 27-114 95-188 (224)
180 PF03031 NIF: NLI interacting 96.2 0.0026 5.6E-08 49.1 1.8 52 10-62 1-72 (159)
181 TIGR01517 ATPase-IIB_Ca plasma 96.2 0.19 4E-06 50.3 14.8 52 229-289 669-722 (941)
182 COG4996 Predicted phosphatase 96.1 0.013 2.8E-07 42.7 4.8 56 10-68 1-81 (164)
183 TIGR02252 DREG-2 REG-2-like, H 96.1 0.046 9.9E-07 43.9 8.7 85 26-115 106-201 (203)
184 PLN02575 haloacid dehalogenase 96.1 0.059 1.3E-06 47.6 9.8 87 27-117 218-314 (381)
185 PRK11587 putative phosphatase; 96.0 0.1 2.2E-06 42.5 10.6 85 26-115 84-178 (218)
186 PRK15122 magnesium-transportin 96.0 0.12 2.7E-06 51.1 12.9 51 229-289 638-690 (903)
187 TIGR01524 ATPase-IIIB_Mg magne 96.0 0.17 3.6E-06 50.1 13.6 48 18-68 508-555 (867)
188 PRK13225 phosphoglycolate phos 96.0 0.074 1.6E-06 45.0 9.7 86 27-116 144-236 (273)
189 TIGR03351 PhnX-like phosphonat 95.9 0.073 1.6E-06 43.3 9.4 87 26-115 88-186 (220)
190 PRK10517 magnesium-transportin 95.9 0.1 2.2E-06 51.7 11.8 51 229-289 638-690 (902)
191 TIGR01652 ATPase-Plipid phosph 95.9 0.27 5.9E-06 49.8 15.0 47 18-67 624-670 (1057)
192 TIGR02009 PGMB-YQAB-SF beta-ph 95.9 0.068 1.5E-06 42.0 8.7 48 25-77 88-135 (185)
193 PF05152 DUF705: Protein of un 95.9 0.021 4.6E-07 47.5 5.7 70 7-79 120-193 (297)
194 TIGR01422 phosphonatase phosph 95.8 0.09 1.9E-06 43.9 9.5 87 26-115 100-197 (253)
195 PRK13222 phosphoglycolate phos 95.8 0.14 3E-06 41.7 10.5 87 26-116 94-190 (226)
196 TIGR02251 HIF-SF_euk Dullard-l 95.7 0.028 6E-07 43.6 5.6 34 220-254 104-137 (162)
197 PRK09449 dUMP phosphatase; Pro 95.7 0.098 2.1E-06 42.7 9.1 88 26-117 96-194 (224)
198 TIGR01990 bPGM beta-phosphoglu 95.6 0.11 2.5E-06 40.8 9.1 49 25-78 87-135 (185)
199 COG4030 Uncharacterized protei 95.6 0.65 1.4E-05 37.5 12.8 40 24-68 82-122 (315)
200 PRK13226 phosphoglycolate phos 95.5 0.1 2.2E-06 42.8 8.6 86 27-116 97-192 (229)
201 COG0546 Gph Predicted phosphat 95.4 0.23 5E-06 40.5 10.3 86 25-114 89-184 (220)
202 PRK13223 phosphoglycolate phos 95.4 0.15 3.3E-06 43.1 9.4 86 27-116 103-198 (272)
203 PLN03190 aminophospholipid tra 95.4 0.72 1.6E-05 47.1 15.4 53 229-291 872-925 (1178)
204 PLN02940 riboflavin kinase 95.3 0.18 4E-06 44.8 10.0 87 27-117 95-192 (382)
205 TIGR01497 kdpB K+-transporting 95.2 0.51 1.1E-05 45.1 13.2 55 10-67 427-485 (675)
206 TIGR02250 FCP1_euk FCP1-like p 95.2 0.058 1.2E-06 41.5 5.7 56 8-67 5-96 (156)
207 PRK14010 potassium-transportin 95.1 0.76 1.6E-05 44.0 13.8 51 229-289 504-556 (673)
208 PLN03064 alpha,alpha-trehalose 95.1 0.035 7.5E-07 54.5 5.1 57 9-68 591-663 (934)
209 COG0637 Predicted phosphatase/ 95.0 0.25 5.4E-06 40.4 9.4 90 25-117 86-184 (221)
210 TIGR01491 HAD-SF-IB-PSPlk HAD- 95.0 0.2 4.3E-06 39.9 8.7 39 27-68 82-120 (201)
211 PRK13478 phosphonoacetaldehyde 94.9 0.33 7.1E-06 40.9 10.2 88 26-116 102-200 (267)
212 TIGR01691 enolase-ppase 2,3-di 94.7 0.21 4.5E-06 40.8 8.1 88 25-116 95-193 (220)
213 TIGR02247 HAD-1A3-hyp Epoxide 94.6 0.16 3.4E-06 41.0 7.3 29 26-54 95-123 (211)
214 TIGR01647 ATPase-IIIA_H plasma 94.6 1.2 2.6E-05 43.5 14.4 48 18-68 435-482 (755)
215 PRK09456 ?-D-glucose-1-phospha 94.6 0.19 4.1E-06 40.2 7.6 26 26-51 85-110 (199)
216 COG4359 Uncharacterized conser 94.6 1.6 3.5E-05 34.1 12.0 29 220-249 151-179 (220)
217 TIGR02254 YjjG/YfnB HAD superf 94.6 0.3 6.5E-06 39.6 8.9 88 25-117 97-196 (224)
218 TIGR01657 P-ATPase-V P-type AT 94.5 1.7 3.6E-05 44.2 15.5 48 18-68 649-696 (1054)
219 TIGR01459 HAD-SF-IIA-hyp4 HAD- 94.4 0.036 7.9E-07 46.0 3.1 90 152-250 25-116 (242)
220 TIGR02245 HAD_IIID1 HAD-superf 94.4 0.13 2.8E-06 41.1 6.0 57 8-68 20-84 (195)
221 TIGR00338 serB phosphoserine p 94.3 0.58 1.3E-05 37.9 10.0 40 26-68 86-125 (219)
222 KOG0210 P-type ATPase [Inorgan 94.3 0.25 5.4E-06 46.3 8.2 51 229-288 782-832 (1051)
223 TIGR02251 HIF-SF_euk Dullard-l 94.2 0.0028 6.1E-08 49.2 -3.8 15 10-24 2-16 (162)
224 PF00702 Hydrolase: haloacid d 94.0 0.025 5.4E-07 45.6 1.3 32 9-40 1-34 (215)
225 TIGR01548 HAD-SF-IA-hyp1 haloa 93.9 0.15 3.3E-06 40.7 5.6 47 26-75 107-153 (197)
226 PLN02811 hydrolase 93.5 0.77 1.7E-05 37.4 9.2 28 24-51 77-104 (220)
227 TIGR01549 HAD-SF-IA-v1 haloaci 93.3 0.92 2E-05 34.4 9.0 27 27-53 66-92 (154)
228 PLN02919 haloacid dehalogenase 93.0 0.87 1.9E-05 46.2 10.4 87 27-117 163-260 (1057)
229 KOG2116 Protein involved in pl 92.8 0.23 5E-06 46.1 5.5 41 9-49 530-582 (738)
230 PLN02779 haloacid dehalogenase 92.8 1.1 2.3E-05 38.3 9.4 88 26-117 145-244 (286)
231 KOG3189 Phosphomannomutase [Li 92.8 0.15 3.4E-06 40.1 3.8 52 11-69 13-65 (252)
232 KOG2630 Enolase-phosphatase E- 92.4 0.77 1.7E-05 37.2 7.3 107 151-261 123-230 (254)
233 PLN02954 phosphoserine phospha 92.3 0.29 6.3E-06 39.9 5.2 39 27-68 86-124 (224)
234 COG4850 Uncharacterized conser 92.2 1.3 2.9E-05 37.7 8.8 58 11-68 163-240 (373)
235 KOG2961 Predicted hydrolase (H 92.1 0.51 1.1E-05 35.6 5.6 62 8-69 42-112 (190)
236 COG1011 Predicted hydrolase (H 91.9 1.4 3.1E-05 35.8 8.9 84 28-116 102-196 (229)
237 TIGR01489 DKMTPPase-SF 2,3-dik 91.4 0.47 1E-05 37.3 5.4 41 25-68 72-112 (188)
238 COG0474 MgtA Cation transport 91.4 2.6 5.6E-05 42.2 11.4 42 24-68 546-587 (917)
239 KOG0203 Na+/K+ ATPase, alpha s 91.3 2 4.2E-05 41.6 9.7 47 220-278 700-746 (1019)
240 TIGR01993 Pyr-5-nucltdase pyri 91.2 1.3 2.8E-05 34.8 7.6 82 27-115 86-181 (184)
241 PF11019 DUF2608: Protein of u 91.2 3.3 7.1E-05 34.6 10.2 47 210-257 160-210 (252)
242 PRK10725 fructose-1-P/6-phosph 91.1 1.8 3.8E-05 34.0 8.3 86 25-116 88-183 (188)
243 COG3882 FkbH Predicted enzyme 91.0 0.36 7.8E-06 43.4 4.5 54 8-61 221-291 (574)
244 PRK06698 bifunctional 5'-methy 91.0 0.52 1.1E-05 43.1 5.8 40 26-68 331-370 (459)
245 KOG0202 Ca2+ transporting ATPa 89.9 2.6 5.6E-05 40.8 9.2 41 25-68 584-624 (972)
246 PRK10563 6-phosphogluconate ph 89.8 2.6 5.6E-05 34.1 8.5 74 39-116 99-183 (221)
247 KOG2134 Polynucleotide kinase 89.7 0.47 1E-05 41.4 4.0 62 8-69 74-157 (422)
248 TIGR01488 HAD-SF-IB Haloacid D 89.6 0.84 1.8E-05 35.4 5.3 39 27-68 75-113 (177)
249 TIGR01533 lipo_e_P4 5'-nucleot 89.3 0.22 4.8E-06 41.8 1.8 84 152-246 119-205 (266)
250 KOG3120 Predicted haloacid deh 89.3 3.9 8.5E-05 33.1 8.5 36 225-261 179-215 (256)
251 COG3700 AphA Acid phosphatase 89.3 0.35 7.6E-06 37.4 2.7 44 210-258 168-213 (237)
252 PF05761 5_nucleotid: 5' nucle 89.3 0.49 1.1E-05 42.9 4.1 41 217-257 284-325 (448)
253 COG0560 SerB Phosphoserine pho 89.1 0.86 1.9E-05 37.0 5.0 38 27-68 79-117 (212)
254 COG2217 ZntA Cation transport 89.1 1.2 2.7E-05 42.8 6.8 55 11-68 519-577 (713)
255 PF04312 DUF460: Protein of un 89.0 1.9 4.1E-05 32.0 6.2 54 10-66 44-100 (138)
256 TIGR01545 YfhB_g-proteo haloac 89.0 0.16 3.5E-06 41.1 0.8 32 222-255 169-200 (210)
257 PRK11133 serB phosphoserine ph 88.8 5.1 0.00011 34.8 9.9 86 27-116 183-288 (322)
258 KOG0206 P-type ATPase [General 88.6 5.2 0.00011 40.6 10.7 26 24-49 650-675 (1151)
259 COG5083 SMP2 Uncharacterized p 88.3 0.9 1.9E-05 40.3 4.8 70 9-78 375-459 (580)
260 PRK09552 mtnX 2-hydroxy-3-keto 88.1 1.1 2.3E-05 36.5 5.1 37 26-65 75-111 (219)
261 TIGR01490 HAD-SF-IB-hyp1 HAD-s 88.0 0.84 1.8E-05 36.4 4.3 40 26-68 88-127 (202)
262 PF12710 HAD: haloacid dehalog 88.0 0.6 1.3E-05 36.8 3.4 32 213-246 158-192 (192)
263 TIGR02137 HSK-PSP phosphoserin 87.8 1.3 2.8E-05 35.7 5.2 40 25-68 68-107 (203)
264 TIGR02990 ectoine_eutA ectoine 87.7 5.6 0.00012 32.9 9.0 39 138-180 180-218 (239)
265 PRK10748 flavin mononucleotide 87.4 3.2 7E-05 34.2 7.6 80 28-117 116-206 (238)
266 PRK13582 thrH phosphoserine ph 87.2 1.5 3.3E-05 35.0 5.4 38 27-68 70-107 (205)
267 PRK11590 hypothetical protein; 87.1 1.5 3.2E-05 35.4 5.3 38 27-67 97-135 (211)
268 KOG2914 Predicted haloacid-hal 86.2 1.6 3.5E-05 35.6 5.0 42 22-63 89-130 (222)
269 PF06189 5-nucleotidase: 5'-nu 86.1 1.4 2.9E-05 36.6 4.5 60 11-70 123-215 (264)
270 PF06941 NT5C: 5' nucleotidase 84.6 1.5 3.3E-05 34.8 4.1 31 21-51 69-99 (191)
271 COG5610 Predicted hydrolase (H 84.3 0.69 1.5E-05 41.3 2.1 49 207-255 153-201 (635)
272 KOG4549 Magnesium-dependent ph 84.0 3.7 8E-05 30.0 5.3 57 9-67 18-84 (144)
273 PF01740 STAS: STAS domain; I 84.0 1.2 2.6E-05 32.1 3.0 64 9-77 48-113 (117)
274 TIGR03333 salvage_mtnX 2-hydro 83.8 2.3 5.1E-05 34.4 5.0 39 25-66 70-108 (214)
275 PRK01122 potassium-transportin 83.6 2.8 6.1E-05 40.2 6.0 56 10-68 426-485 (679)
276 TIGR01545 YfhB_g-proteo haloac 83.0 3 6.6E-05 33.7 5.3 38 26-67 95-134 (210)
277 PF12710 HAD: haloacid dehalog 81.4 2.6 5.7E-05 33.0 4.4 36 30-68 94-129 (192)
278 KOG1615 Phosphoserine phosphat 81.4 4.2 9.2E-05 32.2 5.2 40 26-69 89-129 (227)
279 PHA02597 30.2 hypothetical pro 81.0 19 0.00042 28.4 9.3 29 26-55 75-103 (197)
280 PRK10671 copA copper exporting 80.8 3.5 7.6E-05 40.9 5.8 100 10-115 631-735 (834)
281 PRK01122 potassium-transportin 80.7 38 0.00081 32.8 12.3 113 152-289 446-560 (679)
282 PRK08238 hypothetical protein; 80.7 3.9 8.4E-05 37.7 5.6 38 27-67 74-111 (479)
283 KOG2470 Similar to IMP-GMP spe 80.4 10 0.00022 32.9 7.5 36 221-256 339-375 (510)
284 TIGR01658 EYA-cons_domain eyes 80.1 5.6 0.00012 32.8 5.6 45 213-258 215-259 (274)
285 PLN02645 phosphoglycolate phos 78.1 29 0.00063 29.9 10.0 90 152-254 45-136 (311)
286 COG3700 AphA Acid phosphatase 76.2 5.3 0.00012 31.1 4.3 31 32-62 121-151 (237)
287 COG2217 ZntA Cation transport 75.5 6.5 0.00014 38.0 5.7 59 221-289 592-652 (713)
288 COG4229 Predicted enolase-phos 74.7 25 0.00055 27.7 7.6 28 25-52 103-130 (229)
289 PF11848 DUF3368: Domain of un 73.5 3.7 8E-05 24.5 2.3 34 24-66 15-48 (48)
290 TIGR03278 methan_mark_10 putat 69.6 11 0.00024 33.8 5.5 54 15-68 73-130 (404)
291 KOG0207 Cation transport ATPas 69.1 17 0.00036 35.8 6.7 57 9-68 703-763 (951)
292 TIGR01494 ATPase_P-type ATPase 68.8 14 0.00029 34.3 6.1 49 16-67 338-386 (499)
293 PF00532 Peripla_BP_1: Peripla 68.6 70 0.0015 27.0 10.0 34 79-115 107-152 (279)
294 cd07041 STAS_RsbR_RsbS_like Su 66.7 11 0.00024 26.5 4.1 56 8-69 40-96 (109)
295 PF08353 DUF1727: Domain of un 66.6 30 0.00065 24.9 6.2 87 8-100 20-108 (113)
296 PF12694 MoCo_carrier: Putativ 65.7 4 8.6E-05 30.6 1.6 39 9-47 57-96 (145)
297 TIGR00377 ant_ant_sig anti-ant 65.6 12 0.00027 26.1 4.2 55 8-68 42-97 (108)
298 PLN02177 glycerol-3-phosphate 65.4 2.7 5.8E-05 38.8 0.7 20 9-28 22-41 (497)
299 KOG3085 Predicted hydrolase (H 65.4 7.4 0.00016 32.1 3.2 48 27-78 115-162 (237)
300 PF06941 NT5C: 5' nucleotidase 65.1 2.4 5.2E-05 33.6 0.4 48 232-289 139-186 (191)
301 COG5663 Uncharacterized conser 64.8 3.9 8.4E-05 31.6 1.4 39 220-262 129-167 (194)
302 COG2216 KdpB High-affinity K+ 63.7 21 0.00045 33.0 5.8 50 16-68 438-487 (681)
303 TIGR02886 spore_II_AA anti-sig 63.1 14 0.00031 25.8 4.1 54 9-68 39-93 (106)
304 PF06189 5-nucleotidase: 5'-nu 63.0 19 0.00041 30.1 5.1 68 42-114 37-104 (264)
305 COG5663 Uncharacterized conser 62.7 11 0.00024 29.2 3.4 27 10-36 7-33 (194)
306 KOG0204 Calcium transporting A 62.3 1.5E+02 0.0032 29.6 11.3 47 231-286 741-789 (1034)
307 TIGR01245 trpD anthranilate ph 61.0 31 0.00067 30.1 6.5 73 13-90 71-143 (330)
308 PF06014 DUF910: Bacterial pro 60.4 7.2 0.00016 24.6 1.8 24 218-246 8-31 (62)
309 cd07043 STAS_anti-anti-sigma_f 60.1 18 0.00038 24.6 4.1 54 9-68 38-92 (99)
310 cd06844 STAS Sulphate Transpor 59.7 15 0.00032 25.5 3.6 55 9-68 39-93 (100)
311 COG0548 ArgB Acetylglutamate k 56.7 29 0.00062 29.2 5.2 58 9-70 2-59 (265)
312 PF06888 Put_Phosphatase: Puta 55.4 27 0.00058 28.8 4.9 51 24-77 70-122 (234)
313 PRK00994 F420-dependent methyl 55.0 28 0.00061 28.6 4.7 53 13-68 58-111 (277)
314 TIGR02109 PQQ_syn_pqqE coenzym 55.0 41 0.0009 29.5 6.4 48 20-68 58-107 (358)
315 PRK14607 bifunctional glutamin 54.6 40 0.00086 31.7 6.4 73 13-90 268-340 (534)
316 COG3473 Maleate cis-trans isom 53.8 1.2E+02 0.0025 24.7 7.8 32 31-68 88-119 (238)
317 COG1366 SpoIIAA Anti-anti-sigm 53.7 21 0.00046 25.6 3.7 55 9-68 44-98 (117)
318 KOG2469 IMP-GMP specific 5'-nu 53.6 9.5 0.00021 33.8 2.0 55 207-261 283-338 (424)
319 TIGR01493 HAD-SF-IA-v2 Haloaci 53.4 17 0.00036 28.0 3.3 33 26-68 91-123 (175)
320 cd05014 SIS_Kpsf KpsF-like pro 52.9 22 0.00049 25.7 3.8 31 28-58 61-91 (128)
321 cd06591 GH31_xylosidase_XylS X 52.8 39 0.00086 29.3 5.8 59 9-67 40-105 (319)
322 PRK00188 trpD anthranilate pho 52.3 34 0.00074 30.0 5.4 73 13-90 75-147 (339)
323 COG4359 Uncharacterized conser 51.8 31 0.00067 27.3 4.3 36 28-66 76-111 (220)
324 PRK11303 DNA-binding transcrip 51.2 1.6E+02 0.0034 25.2 15.7 35 220-255 256-291 (328)
325 CHL00162 thiG thiamin biosynth 50.3 1.3E+02 0.0027 25.3 7.8 49 210-262 174-224 (267)
326 PRK05301 pyrroloquinoline quin 50.0 55 0.0012 29.1 6.4 47 21-68 68-116 (378)
327 COG0547 TrpD Anthranilate phos 49.7 47 0.001 29.1 5.7 72 14-90 78-149 (338)
328 PLN02499 glycerol-3-phosphate 49.3 9.5 0.00021 35.0 1.4 20 9-28 8-27 (498)
329 PRK09522 bifunctional glutamin 49.0 45 0.00098 31.2 5.8 73 13-90 273-345 (531)
330 COG4483 Uncharacterized protei 48.3 25 0.00055 22.3 2.8 24 218-246 8-31 (68)
331 cd06598 GH31_transferase_CtsZ 46.9 68 0.0015 27.8 6.3 59 9-67 40-109 (317)
332 PF09269 DUF1967: Domain of un 46.6 22 0.00047 23.1 2.4 20 218-237 46-65 (69)
333 cd05710 SIS_1 A subgroup of th 46.1 26 0.00055 25.3 3.1 29 28-56 61-89 (120)
334 TIGR03470 HpnH hopanoid biosyn 45.8 30 0.00064 30.0 3.9 59 10-68 125-193 (318)
335 cd05008 SIS_GlmS_GlmD_1 SIS (S 45.6 36 0.00077 24.5 3.9 26 28-53 60-85 (126)
336 TIGR03365 Bsubt_queE 7-cyano-7 45.4 31 0.00068 28.4 3.9 36 17-52 74-111 (238)
337 COG2897 SseA Rhodanese-related 45.2 41 0.00089 28.7 4.5 50 210-260 71-126 (285)
338 PRK10076 pyruvate formate lyas 45.1 57 0.0012 26.5 5.2 41 12-52 33-78 (213)
339 PF05761 5_nucleotid: 5' nucle 44.8 24 0.00053 32.2 3.3 31 28-62 186-216 (448)
340 COG2433 Uncharacterized conser 43.9 85 0.0018 29.7 6.5 55 10-67 256-313 (652)
341 KOG3107 Predicted haloacid deh 43.3 51 0.0011 29.2 4.8 42 213-256 410-451 (468)
342 PF06995 Phage_P2_GpU: Phage P 43.1 44 0.00095 24.3 3.9 38 13-50 44-81 (121)
343 TIGR03595 Obg_CgtA_exten Obg f 42.5 34 0.00074 22.1 2.9 20 218-237 46-65 (69)
344 cd01766 Ufm1 Urm1-like ubiquit 42.2 37 0.00081 22.1 2.9 46 210-258 25-70 (82)
345 TIGR02495 NrdG2 anaerobic ribo 41.8 73 0.0016 24.9 5.4 48 16-66 63-112 (191)
346 PF04309 G3P_antiterm: Glycero 41.7 1.2E+02 0.0026 23.8 6.3 76 29-109 32-111 (175)
347 TIGR02826 RNR_activ_nrdG3 anae 41.6 44 0.00095 25.3 3.8 34 16-49 62-96 (147)
348 PRK13762 tRNA-modifying enzyme 41.6 78 0.0017 27.5 5.8 32 28-62 145-176 (322)
349 PF02219 MTHFR: Methylenetetra 41.4 34 0.00073 29.1 3.6 49 237-289 86-134 (287)
350 TIGR03127 RuMP_HxlB 6-phospho 41.1 48 0.001 25.7 4.2 30 28-57 86-115 (179)
351 PRK13602 putative ribosomal pr 40.8 26 0.00057 23.5 2.2 47 22-68 8-55 (82)
352 cd05006 SIS_GmhA Phosphoheptos 40.6 42 0.00091 26.1 3.8 27 28-54 115-141 (177)
353 cd01445 TST_Repeats Thiosulfat 40.2 97 0.0021 23.0 5.5 50 210-259 76-132 (138)
354 cd05013 SIS_RpiR RpiR-like pro 39.8 44 0.00096 24.2 3.7 25 30-54 76-100 (139)
355 PRK06683 hypothetical protein; 39.6 30 0.00065 23.3 2.4 47 22-68 8-55 (82)
356 PTZ00106 60S ribosomal protein 39.5 22 0.00047 25.4 1.8 50 19-68 19-69 (108)
357 TIGR01501 MthylAspMutase methy 38.1 1.7E+02 0.0037 21.8 6.6 39 30-68 69-112 (134)
358 PRK13790 phosphoribosylamine-- 37.7 65 0.0014 28.7 4.9 75 15-91 27-104 (379)
359 PRK13745 anaerobic sulfatase-m 37.2 55 0.0012 29.5 4.4 58 11-68 127-196 (412)
360 PRK06186 hypothetical protein; 37.2 31 0.00068 28.3 2.6 37 13-49 51-91 (229)
361 COG0602 NrdG Organic radical a 36.9 59 0.0013 26.3 4.1 36 16-51 72-109 (212)
362 PF01380 SIS: SIS domain SIS d 36.8 58 0.0013 23.4 3.9 24 30-53 69-92 (131)
363 TIGR01917 gly_red_sel_B glycin 36.0 73 0.0016 28.8 4.7 58 31-91 289-366 (431)
364 COG1180 PflA Pyruvate-formate 35.0 50 0.0011 27.7 3.6 41 15-55 83-126 (260)
365 TIGR02260 benz_CoA_red_B benzo 34.4 76 0.0016 28.7 4.8 50 14-63 349-407 (413)
366 PRK07394 hypothetical protein; 34.2 2.4E+02 0.0052 24.8 7.7 74 13-90 83-159 (342)
367 COG2185 Sbm Methylmalonyl-CoA 34.2 86 0.0019 23.7 4.3 38 31-68 53-93 (143)
368 cd02072 Glm_B12_BD B12 binding 34.1 1E+02 0.0022 22.8 4.6 13 30-42 67-79 (128)
369 KOG0207 Cation transport ATPas 34.1 67 0.0014 31.9 4.5 57 222-288 779-837 (951)
370 TIGR00035 asp_race aspartate r 33.8 2.6E+02 0.0057 22.7 9.0 80 27-117 61-147 (229)
371 KOG2469 IMP-GMP specific 5'-nu 33.7 28 0.0006 31.0 1.8 38 6-43 24-64 (424)
372 TIGR00815 sulP high affinity s 33.7 42 0.00092 31.7 3.2 55 9-68 494-548 (563)
373 cd05017 SIS_PGI_PMI_1 The memb 33.5 76 0.0016 22.7 3.9 24 28-51 57-80 (119)
374 COG2344 AT-rich DNA-binding pr 33.0 82 0.0018 25.1 4.1 57 11-68 113-172 (211)
375 cd06595 GH31_xylosidase_XylS-l 32.9 1E+02 0.0022 26.3 5.2 43 9-51 41-97 (292)
376 COG1911 RPL30 Ribosomal protei 32.9 46 0.001 23.1 2.4 29 21-49 15-44 (100)
377 PLN02257 phosphoribosylamine-- 32.9 74 0.0016 29.0 4.5 74 15-90 62-138 (434)
378 TIGR03840 TMPT_Se_Te thiopurin 32.8 1.6E+02 0.0035 23.8 6.1 46 210-256 17-63 (213)
379 PF10881 DUF2726: Protein of u 32.8 1.6E+02 0.0036 21.2 5.7 27 37-63 97-123 (126)
380 TIGR00441 gmhA phosphoheptose 32.8 61 0.0013 24.6 3.5 25 29-53 94-118 (154)
381 COG1927 Mtd Coenzyme F420-depe 32.4 1.2E+02 0.0025 24.6 4.9 51 14-67 59-110 (277)
382 KOG2470 Similar to IMP-GMP spe 32.4 36 0.00078 29.7 2.3 20 30-49 245-264 (510)
383 PRK07475 hypothetical protein; 32.4 2.9E+02 0.0063 22.9 7.7 81 25-114 62-146 (245)
384 cd05005 SIS_PHI Hexulose-6-pho 31.9 74 0.0016 24.7 3.9 30 28-57 89-118 (179)
385 COG1954 GlpP Glycerol-3-phosph 31.8 2.5E+02 0.0055 22.0 6.5 75 30-109 37-115 (181)
386 TIGR01918 various_sel_PB selen 31.8 92 0.002 28.1 4.7 58 31-91 289-366 (431)
387 CHL00073 chlN photochlorophyll 31.8 3.3E+02 0.0071 25.1 8.3 36 227-263 313-351 (457)
388 cd07042 STAS_SulP_like_sulfate 31.7 50 0.0011 22.7 2.7 53 10-68 42-95 (107)
389 TIGR02329 propionate_PrpR prop 31.6 4.5E+02 0.0097 24.8 9.9 26 231-258 147-172 (526)
390 TIGR01452 PGP_euk phosphoglyco 31.6 36 0.00078 28.7 2.2 25 26-51 144-168 (279)
391 PF02571 CbiJ: Precorrin-6x re 31.2 89 0.0019 26.0 4.4 60 217-290 186-249 (249)
392 PLN02512 acetylglutamate kinas 31.2 98 0.0021 26.7 4.8 55 10-68 48-102 (309)
393 COG0378 HypB Ni2+-binding GTPa 31.1 1.3E+02 0.0028 24.2 5.0 52 210-261 23-76 (202)
394 COG2044 Predicted peroxiredoxi 31.1 1.4E+02 0.003 21.8 4.7 39 11-49 37-83 (120)
395 PRK13937 phosphoheptose isomer 31.1 97 0.0021 24.4 4.5 24 28-51 120-143 (188)
396 TIGR00877 purD phosphoribosyla 31.0 98 0.0021 27.9 5.0 59 33-91 80-141 (423)
397 PTZ00124 adenosine deaminase; 30.5 2.4E+02 0.0052 25.0 7.2 83 10-118 192-276 (362)
398 PRK00885 phosphoribosylamine-- 30.3 1.1E+02 0.0024 27.6 5.2 57 34-90 79-138 (420)
399 PRK05301 pyrroloquinoline quin 30.3 68 0.0015 28.5 3.8 60 9-68 115-184 (378)
400 COG4558 ChuT ABC-type hemin tr 30.3 63 0.0014 27.5 3.3 35 30-66 111-145 (300)
401 CHL00202 argB acetylglutamate 30.2 82 0.0018 26.8 4.1 55 10-68 24-78 (284)
402 PRK11145 pflA pyruvate formate 30.2 1.3E+02 0.0029 24.6 5.4 37 17-53 72-111 (246)
403 PRK11660 putative transporter; 30.1 83 0.0018 29.8 4.5 72 8-85 490-563 (568)
404 PF10662 PduV-EutP: Ethanolami 29.9 2E+02 0.0043 21.7 5.7 9 33-41 111-119 (143)
405 PF03033 Glyco_transf_28: Glyc 29.6 47 0.001 24.2 2.3 33 30-68 15-47 (139)
406 PLN02825 amino-acid N-acetyltr 29.5 87 0.0019 29.3 4.4 56 9-69 17-72 (515)
407 PF05822 UMPH-1: Pyrimidine 5' 29.5 30 0.00064 28.8 1.3 21 227-248 178-198 (246)
408 cd06592 GH31_glucosidase_KIAA1 29.5 99 0.0022 26.5 4.6 42 9-50 46-92 (303)
409 PRK12314 gamma-glutamyl kinase 29.4 69 0.0015 27.0 3.5 49 1-49 1-56 (266)
410 COG0731 Fe-S oxidoreductases [ 29.3 1.1E+02 0.0024 26.2 4.7 35 26-63 93-128 (296)
411 PRK00414 gmhA phosphoheptose i 29.3 1.2E+02 0.0026 24.1 4.7 27 28-54 125-151 (192)
412 PRK04531 acetylglutamate kinas 29.2 74 0.0016 28.6 3.8 55 9-69 36-90 (398)
413 COG0214 SNZ1 Pyridoxine biosyn 29.0 47 0.001 27.3 2.2 52 56-111 89-141 (296)
414 COG1393 ArsC Arsenate reductas 29.0 1.1E+02 0.0025 22.1 4.1 39 30-68 14-53 (117)
415 PF06506 PrpR_N: Propionate ca 29.0 2.7E+02 0.006 21.5 7.2 41 213-259 110-153 (176)
416 COG1412 Uncharacterized protei 28.9 99 0.0021 23.1 3.8 35 30-69 86-120 (136)
417 PF00591 Glycos_transf_3: Glyc 28.9 53 0.0011 27.3 2.7 73 13-90 3-75 (252)
418 COG3785 Uncharacterized conser 28.9 25 0.00055 24.6 0.6 42 8-49 27-68 (116)
419 PRK02261 methylaspartate mutas 28.8 2.5E+02 0.0053 20.9 6.8 41 28-68 69-114 (137)
420 TIGR01279 DPOR_bchN light-inde 28.8 1.5E+02 0.0033 26.7 5.8 38 226-264 272-312 (407)
421 COG1433 Uncharacterized conser 28.6 96 0.0021 22.7 3.6 34 31-68 55-88 (121)
422 COG0647 NagD Predicted sugar p 28.5 3.7E+02 0.0079 22.8 8.2 90 150-253 23-114 (269)
423 cd02071 MM_CoA_mut_B12_BD meth 28.1 1.5E+02 0.0032 21.4 4.7 18 32-49 41-58 (122)
424 PRK13601 putative L7Ae-like ri 28.1 77 0.0017 21.3 2.9 43 26-68 9-52 (82)
425 TIGR00676 fadh2 5,10-methylene 28.0 1E+02 0.0023 26.0 4.4 46 238-289 75-120 (272)
426 PLN02641 anthranilate phosphor 27.9 1.8E+02 0.0038 25.7 5.8 73 13-90 75-147 (343)
427 TIGR00715 precor6x_red precorr 27.9 1.1E+02 0.0024 25.6 4.4 40 240-290 214-253 (256)
428 PF02401 LYTB: LytB protein; 27.7 3.9E+02 0.0084 22.8 12.6 53 207-264 215-269 (281)
429 PF08444 Gly_acyl_tr_C: Aralky 27.7 1.3E+02 0.0027 20.7 3.9 57 9-68 11-76 (89)
430 PF05240 APOBEC_C: APOBEC-like 27.4 71 0.0015 19.7 2.3 20 30-49 4-23 (55)
431 PF04512 Baculo_PEP_N: Baculov 27.2 64 0.0014 22.5 2.4 23 11-39 6-28 (97)
432 PF06073 DUF934: Bacterial pro 27.0 1.9E+02 0.0041 20.7 4.8 44 220-264 41-85 (110)
433 KOG1447 GTP-specific succinyl- 26.9 1.2E+02 0.0025 25.6 4.2 58 8-69 336-394 (412)
434 COG3603 Uncharacterized conser 26.9 2.5E+02 0.0054 20.5 5.3 38 11-51 63-101 (128)
435 PRK13255 thiopurine S-methyltr 26.8 2.3E+02 0.005 23.0 6.0 47 209-256 19-66 (218)
436 TIGR01494 ATPase_P-type ATPase 26.7 81 0.0017 29.2 3.8 36 219-258 397-432 (499)
437 PF01680 SOR_SNZ: SOR/SNZ fami 26.7 17 0.00038 28.4 -0.5 53 54-110 81-134 (208)
438 PF01993 MTD: methylene-5,6,7, 26.6 48 0.001 27.3 1.9 52 14-68 58-110 (276)
439 cd01037 Restriction_endonuclea 26.4 1.2E+02 0.0026 18.8 3.8 39 10-48 38-79 (80)
440 TIGR00677 fadh2_euk methylenet 26.4 1.3E+02 0.0028 25.6 4.7 24 238-261 76-99 (281)
441 KOG1606 Stationary phase-induc 26.4 57 0.0012 26.3 2.3 48 59-110 93-141 (296)
442 cd06593 GH31_xylosidase_YicI Y 26.2 2.4E+02 0.0051 24.2 6.4 42 9-50 40-88 (308)
443 cd04239 AAK_UMPK-like AAK_UMPK 26.2 1.2E+02 0.0027 24.6 4.4 12 11-22 151-162 (229)
444 PRK00942 acetylglutamate kinas 26.1 1.1E+02 0.0025 25.8 4.3 55 10-68 24-78 (283)
445 PRK08116 hypothetical protein; 26.0 1.1E+02 0.0023 25.8 4.1 51 8-61 178-228 (268)
446 TIGR02244 HAD-IG-Ncltidse HAD 25.8 29 0.00063 30.5 0.6 29 152-180 185-213 (343)
447 PRK08136 glycosyl transferase 25.8 2.7E+02 0.0058 24.2 6.5 71 13-90 82-153 (317)
448 PRK13256 thiopurine S-methyltr 25.7 2.6E+02 0.0056 23.0 6.1 47 209-256 25-72 (226)
449 PF03671 Ufm1: Ubiquitin fold 25.5 32 0.00069 22.4 0.6 39 210-249 25-63 (76)
450 PRK13938 phosphoheptose isomer 25.5 1.4E+02 0.0029 23.9 4.4 26 28-53 127-152 (196)
451 smart00500 SFM Splicing Factor 25.4 1.4E+02 0.003 17.5 3.2 30 31-64 4-33 (44)
452 KOG3120 Predicted haloacid deh 25.2 57 0.0012 26.7 2.1 41 25-68 84-125 (256)
453 cd06589 GH31 The enzymes of gl 24.9 1.4E+02 0.0031 25.0 4.6 42 9-50 40-88 (265)
454 PF13466 STAS_2: STAS domain 24.5 1.1E+02 0.0024 19.8 3.2 53 10-68 27-80 (80)
455 PF05198 IF3_N: Translation in 24.5 1.3E+02 0.0028 19.9 3.4 38 10-51 14-51 (76)
456 COG0420 SbcD DNA repair exonuc 24.3 53 0.0011 29.3 2.1 34 18-51 48-85 (390)
457 PRK11866 2-oxoacid ferredoxin 24.2 1.2E+02 0.0025 25.9 3.9 28 210-237 12-42 (279)
458 PRK01018 50S ribosomal protein 24.1 1.8E+02 0.0039 20.2 4.3 29 23-51 14-42 (99)
459 cd00733 GlyRS_alpha_core Class 23.8 77 0.0017 26.4 2.6 48 207-254 77-130 (279)
460 TIGR02668 moaA_archaeal probab 23.8 1.9E+02 0.0042 24.6 5.4 48 19-68 60-110 (302)
461 PF05690 ThiG: Thiazole biosyn 23.8 1.8E+02 0.0038 24.1 4.6 43 22-68 101-146 (247)
462 TIGR00705 SppA_67K signal pept 23.7 56 0.0012 31.1 2.1 41 8-49 93-134 (584)
463 PRK06835 DNA replication prote 23.6 1.2E+02 0.0026 26.5 4.0 52 8-62 246-297 (329)
464 PF00072 Response_reg: Respons 23.6 2.1E+02 0.0045 19.4 4.8 36 30-68 58-95 (112)
465 PRK03670 competence damage-ind 23.3 1.8E+02 0.0038 24.4 4.8 46 215-261 23-72 (252)
466 COG1553 DsrE Uncharacterized c 23.3 1.9E+02 0.0041 21.2 4.3 39 10-48 35-79 (126)
467 cd06578 HemD Uroporphyrinogen- 23.2 3.9E+02 0.0084 21.3 7.8 90 15-116 49-149 (239)
468 PRK14556 pyrH uridylate kinase 23.2 1.6E+02 0.0034 24.6 4.4 29 32-63 210-238 (249)
469 TIGR03190 benz_CoA_bzdN benzoy 23.2 1.7E+02 0.0036 26.1 5.0 49 14-62 312-364 (377)
470 PF09822 ABC_transp_aux: ABC-t 23.1 1.8E+02 0.0039 24.4 4.9 59 14-72 196-267 (271)
471 COG1058 CinA Predicted nucleot 22.9 2.1E+02 0.0045 24.1 5.0 48 215-263 24-74 (255)
472 PF02593 dTMP_synthase: Thymid 22.8 3.6E+02 0.0077 22.0 6.3 51 27-77 61-114 (217)
473 TIGR03470 HpnH hopanoid biosyn 22.8 1.7E+02 0.0037 25.3 4.8 44 21-66 78-123 (318)
474 cd04795 SIS SIS domain. SIS (S 22.7 1.5E+02 0.0032 19.3 3.7 19 30-48 63-81 (87)
475 COG1985 RibD Pyrimidine reduct 22.5 4.3E+02 0.0093 21.5 7.1 60 42-112 98-162 (218)
476 COG1608 Predicted archaeal kin 22.5 2.5E+02 0.0054 23.4 5.3 21 11-31 166-186 (252)
477 PRK09348 glyQ glycyl-tRNA synt 22.5 84 0.0018 26.2 2.6 48 207-254 81-134 (283)
478 PF01888 CbiD: CbiD; InterPro 22.5 1.3E+02 0.0028 25.3 3.8 49 208-256 201-249 (261)
479 PRK09189 uroporphyrinogen-III 22.2 4.3E+02 0.0094 21.5 7.3 56 57-115 84-144 (240)
480 cd00886 MogA_MoaB MogA_MoaB fa 22.1 2E+02 0.0043 21.7 4.6 31 214-245 22-52 (152)
481 smart00540 LEM in nuclear memb 22.0 80 0.0017 18.4 1.8 18 32-49 10-27 (44)
482 PRK10573 type IV pilin biogene 22.0 1.4E+02 0.003 26.7 4.3 44 6-49 4-47 (399)
483 cd06603 GH31_GANC_GANAB_alpha 21.9 1.9E+02 0.004 25.3 4.9 59 9-67 40-105 (339)
484 PRK00075 cbiD cobalt-precorrin 21.7 2E+02 0.0043 25.6 5.0 49 209-257 205-253 (361)
485 smart00481 POLIIIAc DNA polyme 21.5 2.2E+02 0.0047 17.7 5.0 22 30-51 17-38 (67)
486 cd08564 GDPD_GsGDE_like Glycer 21.4 1.9E+02 0.0042 24.1 4.8 38 31-68 213-250 (265)
487 TIGR02494 PFLE_PFLC glycyl-rad 21.4 1.9E+02 0.0041 24.5 4.8 46 17-63 127-175 (295)
488 TIGR02667 moaB_proteo molybden 21.4 2E+02 0.0043 22.1 4.5 43 215-258 25-72 (163)
489 PLN02735 carbamoyl-phosphate s 21.4 9.6E+02 0.021 25.1 14.3 66 215-291 704-769 (1102)
490 PF09547 Spore_IV_A: Stage IV 21.2 1.4E+02 0.0031 27.2 4.0 58 11-68 148-211 (492)
491 PRK10014 DNA-binding transcrip 21.1 5.2E+02 0.011 22.0 11.7 20 78-100 170-189 (342)
492 PRK13789 phosphoribosylamine-- 21.1 96 0.0021 28.2 3.0 33 58-90 112-144 (426)
493 cd01580 AcnA_IRP_Swivel Aconit 21.1 4.1E+02 0.0088 20.7 6.7 39 30-68 84-125 (171)
494 PRK10658 putative alpha-glucos 21.0 2.4E+02 0.0053 27.4 5.8 59 9-67 299-364 (665)
495 smart00455 RBD Raf-like Ras-bi 20.9 1E+02 0.0022 20.0 2.3 25 210-234 19-43 (70)
496 PHA02114 hypothetical protein 20.9 65 0.0014 22.4 1.4 10 12-21 77-86 (127)
497 PLN02235 ATP citrate (pro-S)-l 20.7 2.5E+02 0.0054 25.6 5.4 65 3-69 324-399 (423)
498 TIGR03590 PseG pseudaminic aci 20.7 1.5E+02 0.0032 25.0 4.0 37 30-69 20-56 (279)
499 cd00885 cinA Competence-damage 20.6 2.7E+02 0.0058 21.6 5.1 45 215-260 22-69 (170)
500 cd06601 GH31_lyase_GLase GLase 20.5 2.1E+02 0.0046 25.0 4.9 41 9-49 40-85 (332)
No 1
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-54 Score=353.49 Aligned_cols=265 Identities=36% Similarity=0.589 Sum_probs=241.4
Q ss_pred hhhhhhhhceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHc-CCCCCCCCceechHHH
Q 022757 2 LMSLLTLLRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLTVTEEEIFASSFA 80 (292)
Q Consensus 2 ~m~~~~~~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~-lG~~~~~~~i~~~~~~ 80 (292)
+|.+|+++++++||+||||++|.+++|||.++|++|+++|++++|+|||++|+++.+.++|.. +|+++.+++|+||+.+
T Consensus 1 ~~~~~~~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~a 80 (269)
T COG0647 1 LFDVMDKYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDA 80 (269)
T ss_pred CcchhhhcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHH
Confidence 356678899999999999999999999999999999999999999999999999999999999 7777999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEcChhHHHHHHHcCCeecCCCCCCCCccccCCCCccCCCCCccEEEEeccCCcCHHHHHHHH
Q 022757 81 AAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGT 160 (292)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (292)
+++|+++.. +.+++|++|.+++.++++..|+..+...+ +..+++|++|.++...|+++.+++
T Consensus 81 t~~~l~~~~--~~~kv~viG~~~l~~~l~~~G~~~~~~~~----------------~~~~d~Vv~g~d~~~~~e~l~~a~ 142 (269)
T COG0647 81 TADYLAKQK--PGKKVYVIGEEGLKEELEGAGFELVDEEE----------------PARVDAVVVGLDRTLTYEKLAEAL 142 (269)
T ss_pred HHHHHHhhC--CCCEEEEECCcchHHHHHhCCcEEeccCC----------------CCcccEEEEecCCCCCHHHHHHHH
Confidence 999999763 34799999999999999999999864211 123689999999999999999999
Q ss_pred HHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchh
Q 022757 161 LCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDT 240 (292)
Q Consensus 161 ~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~ 240 (292)
..++ +|++||+||+|..+|.+.+ ..++.|++...++.+++.++...|||++.+|+.+++.++.++++++||||++.+
T Consensus 143 ~~i~--~g~~fI~tNpD~~~p~~~g-~~pgaGai~~~~~~~tg~~~~~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~T 219 (269)
T COG0647 143 LAIA--AGAPFIATNPDLTVPTERG-LRPGAGAIAALLEQATGREPTVIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDT 219 (269)
T ss_pred HHHH--cCCcEEEeCCCccccCCCC-CccCcHHHHHHHHHhhCCcccccCCCCHHHHHHHHHHhCCCcccEEEEcCCchh
Confidence 9997 5799999999999987666 789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHH
Q 022757 241 DILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 289 (292)
Q Consensus 241 Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~ 289 (292)
||.+|+++||+|++|+||.++.+++.. .+.+|+|+.+|+.++...+.
T Consensus 220 DI~~a~~~G~~t~LV~TGv~~~~~~~~--~~~~p~~v~~sl~~~~~~~~ 266 (269)
T COG0647 220 DILGAKAAGLDTLLVLTGVSSAEDLDR--AEVKPTYVVDSLAELITALK 266 (269)
T ss_pred hHHHHHHcCCCEEEEccCCCChhhhhh--hccCCcchHhhHHHHHhhhh
Confidence 999999999999999999999888653 36799999999999986653
No 2
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-54 Score=346.61 Aligned_cols=283 Identities=52% Similarity=0.833 Sum_probs=253.0
Q ss_pred hhhhhceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC-CCCCceechHHHHHH
Q 022757 5 LLTLLRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT-VTEEEIFASSFAAAA 83 (292)
Q Consensus 5 ~~~~~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~-~~~~~i~~~~~~~~~ 83 (292)
.+..+..|+||.|||||.++.++||+.|++++|++.|+.+.|+||||.++++++.++++.+|+. +.+++|++|+.+++.
T Consensus 18 ~l~~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~ssa~~~a~ 97 (306)
T KOG2882|consen 18 LLDSFDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFSSAYAIAD 97 (306)
T ss_pred HHhhcCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCcccccChHHHHHH
Confidence 3556889999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHhcCCCCCCeEEEEcChhHHHHHHHcCCeecCCCCCCCCccccCCCC-ccCCCCCccEEEEeccCCcCHHHHHHHHHH
Q 022757 84 YLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGF-LMEHDKDVGAVVVGFDRYFNYYKVQYGTLC 162 (292)
Q Consensus 84 ~l~~~~~~~~~~~~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 162 (292)
|++++. +.+++||++|.+++.++|++.|++....+.+....-...+.. ....++++.||++|.|..++|.++..++.+
T Consensus 98 ylk~~~-~~~k~Vyvig~~gi~~eL~~aG~~~~g~~~~~~~~~~~~~~~~~~~~d~~VgAVvvg~D~hfsy~KL~kA~~y 176 (306)
T KOG2882|consen 98 YLKKRK-PFGKKVYVIGEEGIREELDEAGFEYFGGGPDGKDTDGAKSFVLSIGLDPDVGAVVVGYDEHFSYPKLMKALNY 176 (306)
T ss_pred HHHHhC-cCCCeEEEecchhhhHHHHHcCceeecCCCCcccccccccchhhcCCCCCCCEEEEecccccCHHHHHHHHHH
Confidence 998876 457899999999999999999999877554443220000111 112367799999999999999999999999
Q ss_pred HHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhH
Q 022757 163 IRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDI 242 (292)
Q Consensus 163 l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di 242 (292)
|+ ++++.|++||.|.+.|...+..++|.|++.+++..++++++..+|||++.+++.++++++++|++|+||||+|.+||
T Consensus 177 Lq-nP~clflatn~D~~~p~~~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDI 255 (306)
T KOG2882|consen 177 LQ-NPGCLFLATNRDATTPPTPGVEIPGAGSFVAAVKFATGRQPIVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDI 255 (306)
T ss_pred hC-CCCcEEEeccCccccCCCCCeeccCCccHHHHHHHHhcCCCeecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhh
Confidence 98 59999999999998886778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEEecCCCChhhccCC--CCCCCCcEEeCCHhhHHHhHH
Q 022757 243 LFGQNGGCKTLLVLSGVTSLSMLQSP--NNSIQPDFYTNKISDFLSLKA 289 (292)
Q Consensus 243 ~~a~~aG~~~i~V~~G~~~~~~~~~~--~~~~~pd~~~~~l~~l~~~~~ 289 (292)
..++++|++|+||.||.++.++.+.. +....|||+++++.++.+.+.
T Consensus 256 lFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~d~~~~~~ 304 (306)
T KOG2882|consen 256 LFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLGDLLPLLN 304 (306)
T ss_pred hHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHHHHhhhcc
Confidence 99999999999999999998887654 556789999999999987654
No 3
>PLN02645 phosphoglycolate phosphatase
Probab=100.00 E-value=2.9e-50 Score=345.05 Aligned_cols=288 Identities=86% Similarity=1.326 Sum_probs=247.3
Q ss_pred hhhhhceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHH
Q 022757 5 LLTLLRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAY 84 (292)
Q Consensus 5 ~~~~~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~ 84 (292)
++..+|+|+||+|||||++++++||+.++|++|+++|++++|+|||+++++.++.++|+.+|+++..++|++++..+..|
T Consensus 24 ~~~~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~~~~~~ 103 (311)
T PLN02645 24 LIDSVETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAAY 103 (311)
T ss_pred HHHhCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHHHHHHH
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEcChhHHHHHHHcCCeecCCCCCCCCccccCCCCccCCCCCccEEEEeccCCcCHHHHHHHHHHHH
Q 022757 85 LKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIR 164 (292)
Q Consensus 85 l~~~~~~~~~~~~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~ 164 (292)
+++.++..++++|++|..++.++++..|+..+.+..+..........+....++++++|+++.++.++|.++..++.+++
T Consensus 104 l~~~~~~~~~~V~viG~~~~~~~l~~~Gi~~~~g~~~~~~~~~~~~~~~~~~~~~i~aVvvg~d~~~~~~~l~~a~~~l~ 183 (311)
T PLN02645 104 LKSINFPKDKKVYVIGEEGILEELELAGFQYLGGPEDGDKKIELKPGFLMEHDKDVGAVVVGFDRYINYYKIQYATLCIR 183 (311)
T ss_pred HHhhccCCCCEEEEEcCHHHHHHHHHCCCEEecCccccccccccccccccccCCCCCEEEEecCCCCCHHHHHHHHHHHh
Confidence 99776654568999999999999999999876543332111111111112234567999999999999999999999997
Q ss_pred cCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHH
Q 022757 165 ENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILF 244 (292)
Q Consensus 165 ~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~ 244 (292)
.++|+.+|+||+|..++.......++.|.++..+..+++..+..+|||+|.+|..+++++++++++++||||++.+||.+
T Consensus 184 ~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~ 263 (311)
T PLN02645 184 ENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGDRLDTDILF 263 (311)
T ss_pred cCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcCCcHHHHHH
Confidence 66799999999999765445556789999999999999988888899999999999999999999999999997799999
Q ss_pred HHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHhhC
Q 022757 245 GQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAAAV 292 (292)
Q Consensus 245 a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~~~ 292 (292)
|+++|+++++|.+|.+..+++.......+||++++++.+|.+++++.+
T Consensus 264 A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l~~~~~~~~ 311 (311)
T PLN02645 264 GQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDFLTLKAATV 311 (311)
T ss_pred HHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHHHHHhhcCC
Confidence 999999999999999987776432234689999999999999887754
No 4
>PRK10444 UMP phosphatase; Provisional
Probab=100.00 E-value=5.8e-48 Score=319.22 Aligned_cols=245 Identities=29% Similarity=0.507 Sum_probs=224.1
Q ss_pred hceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhc
Q 022757 9 LRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSI 88 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~ 88 (292)
+|+|+||+|||||++++++|++.+++++|+++|++++|+||++.++..++.++|..+|++++.++|+||+.+++.|+++.
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~ 80 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQ 80 (248)
T ss_pred CcEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCeEEEEcChhHHHHHHHcCCeecCCCCCCCCccccCCCCccCCCCCccEEEEeccCCcCHHHHHHHHHHHHcCCC
Q 022757 89 DFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPG 168 (292)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (292)
+ +.++|++|..++.+++...|+.+. +.++++|+++.+.+++|.++..+..+++ ++
T Consensus 81 ~---~~~v~~~g~~~l~~~l~~~g~~~~--------------------~~~~~~Vvvg~~~~~~~~~l~~a~~~l~--~g 135 (248)
T PRK10444 81 E---GKKAYVIGEGALIHELYKAGFTIT--------------------DINPDFVIVGETRSYNWDMMHKAAYFVA--NG 135 (248)
T ss_pred C---CCEEEEEcCHHHHHHHHHCcCEec--------------------CCCCCEEEEeCCCCCCHHHHHHHHHHHH--CC
Confidence 2 467999999999999999888762 2456899999999999999999999886 69
Q ss_pred cEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhc
Q 022757 169 CLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNG 248 (292)
Q Consensus 169 ~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~a 248 (292)
.+++++|+|...+ + ..++.|.+...+...++.++...|||+|.+|+.+++++++++++|+||||++.+||.+|+++
T Consensus 136 ~~~i~~n~D~~~~---g-~~~~~G~~~~~l~~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~ 211 (248)
T PRK10444 136 ARFIATNPDTHGR---G-FYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQA 211 (248)
T ss_pred CEEEEECCCCCCC---C-CcCcHHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHc
Confidence 9999999999543 3 57899999999999999988889999999999999999999999999999987999999999
Q ss_pred CCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhH
Q 022757 249 GCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDF 284 (292)
Q Consensus 249 G~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l 284 (292)
|+++++|.||.++.++++. ...+|||+++|+.++
T Consensus 212 G~~~vlV~~G~~~~~~l~~--~~~~pd~~~~sl~el 245 (248)
T PRK10444 212 GLETILVLSGVSTLDDIDS--MPFRPSWIYPSVADI 245 (248)
T ss_pred CCCEEEECCCCCCHHHHhc--CCCCCCEEECCHHHh
Confidence 9999999999999887653 346899999999987
No 5
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=100.00 E-value=7e-48 Score=326.26 Aligned_cols=275 Identities=41% Similarity=0.708 Sum_probs=233.2
Q ss_pred hhceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHh
Q 022757 8 LLRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKS 87 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~ 87 (292)
++|+|+||+|||||++++.+|++.++|++|+++|++++++|||+.+++.++..+|+.+|++...++|++|+..+..|+++
T Consensus 1 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~l~~ 80 (279)
T TIGR01452 1 RAQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSALCAARLLRQ 80 (279)
T ss_pred CccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999998899999999999999987
Q ss_pred cCCCCCCeEEEEcChhHHHHHHHcCCeecCCCCCCCCccccCCCCccCCCCCccEEEEeccCCcCHHHHHHHHHHHHcCC
Q 022757 88 IDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENP 167 (292)
Q Consensus 88 ~~~~~~~~~~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~ 167 (292)
... ++.+++++|.+.+.++++..|+..+..+++...............++.+++|+++.+..++|+.+.+++..++. +
T Consensus 81 ~~~-~~~~v~~iG~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvv~~d~~~~y~~i~~~l~~L~~-~ 158 (279)
T TIGR01452 81 PPD-APKAVYVIGEEGLRAELDAAGIRLAGDPSAGDGAAPRGSGAFMKLEENVGAVVVGYDEHFSYAKLREACAHLRE-P 158 (279)
T ss_pred hCc-CCCEEEEEcCHHHHHHHHHCCCEEecCcccccccchhhcccccccCCCCCEEEEecCCCCCHHHHHHHHHHHhc-C
Confidence 533 24689999999999999999999765433321111100001112345789999999999999999999999975 6
Q ss_pred CcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHh
Q 022757 168 GCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQN 247 (292)
Q Consensus 168 ~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~ 247 (292)
|..+++||++..++.......++.+.++..+..+++.+....|||+|.+|..+++++|++|++|+||||++.+||++|++
T Consensus 159 g~~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~lmIGD~~~tDI~~A~~ 238 (279)
T TIGR01452 159 GCLFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTLMVGDRLETDILFGHR 238 (279)
T ss_pred CCEEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEEEECCChHHHHHHHHH
Confidence 78899999998776444455778899999999888888888899999999999999999999999999997799999999
Q ss_pred cCCeEEEEecCCCChhhccCC----CCCCCCcEEeCCHhhH
Q 022757 248 GGCKTLLVLSGVTSLSMLQSP----NNSIQPDFYTNKISDF 284 (292)
Q Consensus 248 aG~~~i~V~~G~~~~~~~~~~----~~~~~pd~~~~~l~~l 284 (292)
+|+++++|.||.+..++++.. ....+|||+++++.+|
T Consensus 239 aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 239 CGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred cCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 999999999999988876531 2346899999999874
No 6
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=100.00 E-value=3.5e-47 Score=316.22 Aligned_cols=249 Identities=29% Similarity=0.490 Sum_probs=225.1
Q ss_pred hceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhc
Q 022757 9 LRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSI 88 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~ 88 (292)
+|+++||+|||||++++.+|++.++|++|+++|++++|+|||++|++..+.++++.+|+++..++|++++.++..|+++.
T Consensus 1 ~~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~ 80 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMNDL 80 (249)
T ss_pred CCEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCeEEEEcChhHHHHHHHcCCeecCCCCCCCCccccCCCCccCCCCCccEEEEeccCCcCHHHHHHHHHHHHcCCC
Q 022757 89 DFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPG 168 (292)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (292)
+ ..++++++|.+++.++++..|+... ..++++|+++.++.++|+++..++..++ ++
T Consensus 81 ~--~~~~v~~lg~~~l~~~l~~~g~~~~--------------------~~~~~~Vvvg~~~~~~y~~l~~a~~~l~--~g 136 (249)
T TIGR01457 81 K--LEKTVYVIGEEGLKEAIKEAGYVED--------------------KEKPDYVVVGLDRQIDYEKFATATLAIR--KG 136 (249)
T ss_pred C--CCCEEEEEcChhHHHHHHHcCCEec--------------------CCCCCEEEEeCCCCCCHHHHHHHHHHHH--CC
Confidence 3 3478999999999999999998752 2456899999999999999999999886 58
Q ss_pred cEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhc
Q 022757 169 CLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNG 248 (292)
Q Consensus 169 ~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~a 248 (292)
++++++|+|..++...+ ..++.|.+...+..+++.+....|||+|.+|+.+++++++++++++||||++.+||.+|+++
T Consensus 137 ~~~i~tN~D~~~~~~~~-~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~ 215 (249)
T TIGR01457 137 AHFIGTNGDLAIPTERG-LLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDA 215 (249)
T ss_pred CeEEEECCCCCCCCCCC-CCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHc
Confidence 89999999998875444 56889999999999989988889999999999999999999999999999977999999999
Q ss_pred CCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhH
Q 022757 249 GCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDF 284 (292)
Q Consensus 249 G~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l 284 (292)
|+++++|.+|.++.+++.. ....||++++++.++
T Consensus 216 G~~~v~v~~G~~~~~~~~~--~~~~pd~~v~~l~~~ 249 (249)
T TIGR01457 216 GIDTLLVHTGVTKAEEVAG--LPIAPTHVVSSLAEW 249 (249)
T ss_pred CCcEEEEcCCCCCHHHHhc--CCCCCCEEeCChhhC
Confidence 9999999999988776542 336899999999764
No 7
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=100.00 E-value=3.5e-44 Score=299.38 Aligned_cols=251 Identities=22% Similarity=0.336 Sum_probs=215.9
Q ss_pred hceeEEEeeeeeeeCCc----cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHH
Q 022757 9 LRLSFLTVMVIIWKGDK----LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAY 84 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~----~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~ 84 (292)
+|+|+||+|||||++++ ++|++.+++++|+++|++++|+|||+.+++.++.++|+.+|+++.+++|+||+.++..|
T Consensus 1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~ 80 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQL 80 (257)
T ss_pred CCEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHH
Confidence 48999999999999988 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEcChhHHHHHHHcCCeecCCCCCCCCccccCCCCccCCCCCccEEEEeccC-CcCHHHHHHHHHHH
Q 022757 85 LKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDR-YFNYYKVQYGTLCI 163 (292)
Q Consensus 85 l~~~~~~~~~~~~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~l 163 (292)
+++.+ .++++++.+++.+++. ++. ..++++|+++.+. .++|+.+.++++.+
T Consensus 81 l~~~~----~~~~~~g~~~~~~~~~--~~~----------------------~~~~~~Vv~g~~~~~~~y~~l~~a~~~L 132 (257)
T TIGR01458 81 LEEKQ----LRPMLLVDDRVLPDFD--GID----------------------TSDPNCVVMGLAPEHFSYQILNQAFRLL 132 (257)
T ss_pred HHhcC----CCeEEEECccHHHHhc--cCC----------------------CCCCCEEEEecccCccCHHHHHHHHHHH
Confidence 98763 3478888887777664 211 1345789999864 68999999999999
Q ss_pred HcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHH
Q 022757 164 RENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDIL 243 (292)
Q Consensus 164 ~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~ 243 (292)
+......+++||++..++... ...++.+.+++.+..+++.++...|||+|.+|..+++++|++|++++||||++.+||.
T Consensus 133 ~~~~~~~~iatn~~~~~~~~~-~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~vGD~~~~Di~ 211 (257)
T TIGR01458 133 LDGAKPLLIAIGKGRYYKRKD-GLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVMIGDDCRDDVG 211 (257)
T ss_pred HcCCCCEEEEeCCCCCCcCCC-CCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEEECCCcHHHHH
Confidence 854444688999999776433 3567999999999999998888889999999999999999999999999999779999
Q ss_pred HHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHh
Q 022757 244 FGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 290 (292)
Q Consensus 244 ~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~ 290 (292)
+|+++|+++++|.+|.+..++.+. ...+||++++++.++.+++.+
T Consensus 212 ~a~~~G~~~i~v~~G~~~~~~~~~--~~~~pd~~~~sl~el~~~l~~ 256 (257)
T TIGR01458 212 GAQDCGMRGIQVRTGKYRPSDEEK--INVPPDLTCDSLPHAVDLILQ 256 (257)
T ss_pred HHHHcCCeEEEECCCCCChHHhcc--cCCCCCEEECCHHHHHHHHhh
Confidence 999999999999999865543321 236899999999999987755
No 8
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=100.00 E-value=4.8e-43 Score=267.42 Aligned_cols=258 Identities=28% Similarity=0.415 Sum_probs=224.6
Q ss_pred hhhhhhhceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHH
Q 022757 3 MSLLTLLRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAA 82 (292)
Q Consensus 3 m~~~~~~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~ 82 (292)
|+-+..+|++++|+-|||+.++.++|++.||+++|+.++..+-|+||.+..|...+.++|.++||++++++|++|..++.
T Consensus 1 m~~~~~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~ 80 (262)
T KOG3040|consen 1 MSNGRAVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAAR 80 (262)
T ss_pred CCcccccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHH
Confidence 33345689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEcChhHHHHHHHcCCeecCCCCCCCCccccCCCCccCCCCCccEEEEecc-CCcCHHHHHHHHH
Q 022757 83 AYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFD-RYFNYYKVQYGTL 161 (292)
Q Consensus 83 ~~l~~~~~~~~~~~~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~ 161 (292)
+|++++++. .|++-.++..+.+. |+ +...+++|++|.. +.|+|..+..+++
T Consensus 81 ~~~~~~~lr----P~l~v~d~a~~dF~--gi----------------------dTs~pn~VViglape~F~y~~ln~AFr 132 (262)
T KOG3040|consen 81 QYLEENQLR----PYLIVDDDALEDFD--GI----------------------DTSDPNCVVIGLAPEGFSYQRLNRAFR 132 (262)
T ss_pred HHHHhcCCC----ceEEEcccchhhCC--Cc----------------------cCCCCCeEEEecCcccccHHHHHHHHH
Confidence 999988653 23333444443332 11 2346789999875 6789999999999
Q ss_pred HHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhh
Q 022757 162 CIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTD 241 (292)
Q Consensus 162 ~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~D 241 (292)
.|.+.++..+|+.++.+.+....+ ...+.|.|...++++++++..++|||+|.+|+.+++.+|++|++++||||++..|
T Consensus 133 vL~e~~k~~LIai~kgryykr~~G-l~lgpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dD 211 (262)
T KOG3040|consen 133 VLLEMKKPLLIAIGKGRYYKRVDG-LCLGPGPFVAALEYATGCEATVVGKPSPFFFESALQALGVDPEEAVMIGDDLNDD 211 (262)
T ss_pred HHHcCCCCeEEEecCceeeeeccc-cccCchHHHHHhhhccCceEEEecCCCHHHHHHHHHhcCCChHHheEEccccccc
Confidence 999887889999999997765444 5678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHhh
Q 022757 242 ILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAAA 291 (292)
Q Consensus 242 i~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~~ 291 (292)
+.+|+++||+.|+|.||+.++.+.+ ++...||.+++++.+..++|.+.
T Consensus 212 vgGAq~~GMrgilVkTGK~rpsDe~--k~~~~p~~~~d~f~~AVd~I~q~ 259 (262)
T KOG3040|consen 212 VGGAQACGMRGILVKTGKFRPSDEE--KPPVPPDLTADNFADAVDLIIQN 259 (262)
T ss_pred hhhHhhhcceeEEeeccccCCcccc--cCCCCcchhhhhHHHHHHHHHhh
Confidence 9999999999999999999986644 35678999999999999988653
No 9
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=100.00 E-value=5.7e-42 Score=294.84 Aligned_cols=271 Identities=20% Similarity=0.204 Sum_probs=217.4
Q ss_pred eeEEEeeeeeeeCCccCCCHHHHHHHHHHC----CCcEEEEeCCCCCCHHHHHHHH-HcCCCCCCCCceechHHHHHHHH
Q 022757 11 LSFLTVMVIIWKGDKLIDGVPETLDMLRSK----GKRLVFVTNNSTKSRKQYGKKF-ETLGLTVTEEEIFASSFAAAAYL 85 (292)
Q Consensus 11 ~i~fDiDGtL~~~~~~i~~a~eal~~L~~~----G~~~~~~Tn~s~r~~~~~~~~l-~~lG~~~~~~~i~~~~~~~~~~l 85 (292)
+++||+|||||+++.++|++.++++.|+++ |+++.++|||+++++.++.++| +.+|+++..++|++++..+..++
T Consensus 2 ~~ifD~DGvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~~~~~~ll 81 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSHSPYKSLV 81 (321)
T ss_pred EEEEeCcCceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhhHHHHHHH
Confidence 689999999999999999999999999998 9999999999999999999988 88999999999999998887777
Q ss_pred HhcCCCCCCeEEEEcChhHHHHHHHcCCeecCCCCCCCCccccCC-------C-------Ccc-CCCCCccEEEEeccCC
Q 022757 86 KSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKP-------G-------FLM-EHDKDVGAVVVGFDRY 150 (292)
Q Consensus 86 ~~~~~~~~~~~~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-------~-------~~~-~~~~~~~~v~~~~~~~ 150 (292)
++. . .+++++|..++.+.++..|+..+...++.....+..+ . ... ...+.+++|+++.+..
T Consensus 82 ~~~--~--~~v~viG~~~~~~~l~~~G~~~vv~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aVvv~~d~~ 157 (321)
T TIGR01456 82 NKY--E--KRILAVGTGSVRGVAEGYGFQNVVHQDEIVRYFRDIDPFSGMSDEQVREYSRDIPDLTTKRFDAVLVFNDPV 157 (321)
T ss_pred HHc--C--CceEEEeChHHHHHHHHcCCcccccHHHHHhcCCCCCcccccCHHHhhcccccccccCCCceeEEEEecCch
Confidence 543 2 3689999999999999999875432111000000000 0 000 0125789999998877
Q ss_pred cCHHHHHHHHHHHHcC---------CCcEEEEecCCcccccCCCCcccCcchHHHHHHh----ccCCCc--eeecCCcHH
Q 022757 151 FNYYKVQYGTLCIREN---------PGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVG----STQREP--LVVGKPSTF 215 (292)
Q Consensus 151 ~~~~~~~~~~~~l~~~---------~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~--~~~gKP~~~ 215 (292)
..+.++..+..+++.. ++++++++|+|..++...+...++.|++..++.. +++..+ ..+|||++.
T Consensus 158 ~~~~~l~~~~~~l~~~g~~g~~~~~~~~~~i~~n~D~~~p~~~g~~~~g~Ga~~~~l~~~~~~~tg~~~~~~~~GKP~~~ 237 (321)
T TIGR01456 158 DWAADIQIISDALNSEGLPGEKSGKPSIPIYFSNQDLLWANEYKLNRFGQGAFRLLLERIYLELNGKPLQYYTLGKPTKL 237 (321)
T ss_pred HHhhhHHHHHHHHhCCCCcCCCCCCCCCCEEEeCCCEeeccCCCCceechHHHHHHHHHHHHHhcCCCcceEEcCCCChH
Confidence 7777888888888742 2368999999999986666557899999999987 566643 678999999
Q ss_pred HHHHHHHHc--------CC-----CCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHh
Q 022757 216 MMDYLANKF--------GI-----QKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKIS 282 (292)
Q Consensus 216 ~~~~~~~~l--------gi-----~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~ 282 (292)
+|+.+++.+ ++ ++++++||||++.+||.+|+++||++++|.||.++.++. ....+|+|+++|+.
T Consensus 238 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~---~~~~~p~~vv~~l~ 314 (321)
T TIGR01456 238 TYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDD---LKECKPTLIVNDVF 314 (321)
T ss_pred HHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCC---CCCCCCCEEECCHH
Confidence 999999888 43 457999999999999999999999999999998776542 13467999999999
Q ss_pred hHHHhH
Q 022757 283 DFLSLK 288 (292)
Q Consensus 283 ~l~~~~ 288 (292)
|+.+.|
T Consensus 315 e~~~~i 320 (321)
T TIGR01456 315 DAVTKI 320 (321)
T ss_pred HHHHHh
Confidence 998765
No 10
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=100.00 E-value=1e-39 Score=269.53 Aligned_cols=234 Identities=35% Similarity=0.503 Sum_probs=201.9
Q ss_pred eEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHc-CCCCCCCCceechHHHHHHHHHhcCC
Q 022757 12 SFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLTVTEEEIFASSFAAAAYLKSIDF 90 (292)
Q Consensus 12 i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~-lG~~~~~~~i~~~~~~~~~~l~~~~~ 90 (292)
++||+|||||++++++|+|.++++.++++|+++.|+|||++|++.++.++|.+ +|++++.+++++|+.++..|++++.
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~- 79 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRF- 79 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhC-
Confidence 68999999999999999999999999999999999999999999999999998 8999999999999999999998752
Q ss_pred CCCCeEEEEcChhHHHHHHHcCCeecCCCCCCCCccccCCCCccCCCCCccEEEEeccCCcCHHHHHHHHHHHHcCCCcE
Q 022757 91 PKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCL 170 (292)
Q Consensus 91 ~~~~~~~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (292)
++++++++|.+++.++++..|++.....+. ......+.+++|+++.+..++|..+..+..++++ ++.+
T Consensus 80 -~~~~v~v~G~~~~~~~l~~~g~~~~~~~~~----------~~~~~~~~~~~vv~~~~~~~~~~~~~~a~~~l~~-~~~~ 147 (236)
T TIGR01460 80 -EGEKVYVIGVGELRESLEGLGFRNDFFDDI----------DHLAIEKIPAAVIVGEPSDFSYDELAKAAYLLAE-GDVP 147 (236)
T ss_pred -CCCEEEEECCHHHHHHHHHcCCcCcccCcc----------cccccCCCCeEEEECCCCCcCHHHHHHHHHHHhC-CCCe
Confidence 356799999999999999998763000000 0001123457889999999999999999888873 3389
Q ss_pred EEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE-EEECCCchhhHHHHHhcC
Q 022757 171 FIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI-CMVGDRLDTDILFGQNGG 249 (292)
Q Consensus 171 ~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~-~~iGD~l~~Di~~a~~aG 249 (292)
+++||+|..++...+...++.+.+++.+....+......|||+|.+|+.++++++++++++ +||||++.+||.+|+++|
T Consensus 148 ~i~tN~d~~~~~~~g~~~~~~g~~~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G 227 (236)
T TIGR01460 148 FIAANRDDLVRLGDGRFRPGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAG 227 (236)
T ss_pred EEEECCCCCCCCCCCcEeecchHHHHHHHHHhCceeeeecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCC
Confidence 9999999766655666788999999999999998887889999999999999999999887 999999779999999999
Q ss_pred CeEEEEecC
Q 022757 250 CKTLLVLSG 258 (292)
Q Consensus 250 ~~~i~V~~G 258 (292)
+++++|.||
T Consensus 228 ~~~i~v~~G 236 (236)
T TIGR01460 228 FDTLLVLTG 236 (236)
T ss_pred CcEEEEecC
Confidence 999999887
No 11
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=100.00 E-value=7.4e-34 Score=235.97 Aligned_cols=230 Identities=20% Similarity=0.212 Sum_probs=182.4
Q ss_pred hhhhhceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCC-CCCceechHHHHHH
Q 022757 5 LLTLLRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV-TEEEIFASSFAAAA 83 (292)
Q Consensus 5 ~~~~~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~-~~~~i~~~~~~~~~ 83 (292)
++.++++++||+||||+++.+++||+.+++++|+++|+++.++||+ +++..++.++|+.+|++. ..+.|+++......
T Consensus 4 ~~~~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~-~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~~ 82 (242)
T TIGR01459 4 LINDYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNS-PRNIFSLHKTLKSLGINADLPEMIISSGEIAVQ 82 (242)
T ss_pred hhhcCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCC-CCChHHHHHHHHHCCCCccccceEEccHHHHHH
Confidence 4567999999999999999999999999999999999999999995 577777788999999987 67899999987766
Q ss_pred HHHhc----CCCCCCeEEEEcChhH-HHHHHHcCCeecCCCCCCCCccccCCCCccCCCCCccEEEEecc--CCcCHHHH
Q 022757 84 YLKSI----DFPKDKKVYVVGEDGI-LKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFD--RYFNYYKV 156 (292)
Q Consensus 84 ~l~~~----~~~~~~~~~~~g~~~~-~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~ 156 (292)
++... +.. .++++++|.... .+.+...+.... ....++++|+++.+ ..++|+.+
T Consensus 83 ~l~~~~~~~~~~-~~~~~~vGd~~~d~~~~~~~~~~~~------------------~~~~~~~~vvv~~~~~~~~~~~~~ 143 (242)
T TIGR01459 83 MILESKKRFDIR-NGIIYLLGHLENDIINLMQCYTTDD------------------ENKANASLITIYRSENEKLDLDEF 143 (242)
T ss_pred HHHhhhhhccCC-CceEEEeCCcccchhhhcCCCcccc------------------CCcccCcEEEEcCCCcccCCHHHH
Confidence 66432 222 356788887553 344433332211 01234567777755 44789999
Q ss_pred HHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCC-CCcEEEEC
Q 022757 157 QYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQ-KSQICMVG 235 (292)
Q Consensus 157 ~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~-~~~~~~iG 235 (292)
...++.+.. +|+++++||++..++. .....++.+.++..+.. .+.+....|||+|.+|+.++++++.. +++|+|||
T Consensus 144 ~~~l~~l~~-~g~~~i~tN~d~~~~~-~~~~~~~~g~~~~~i~~-~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~vG 220 (242)
T TIGR01459 144 DELFAPIVA-RKIPNICANPDRGINQ-HGIYRYGAGYYAELIKQ-LGGKVIYSGKPYPAIFHKALKECSNIPKNRMLMVG 220 (242)
T ss_pred HHHHHHHHh-CCCcEEEECCCEeccC-CCceEecccHHHHHHHH-hCCcEecCCCCCHHHHHHHHHHcCCCCcccEEEEC
Confidence 988887754 6888999999998874 44567888988888766 34466678999999999999999875 67999999
Q ss_pred CCchhhHHHHHhcCCeEEEEec
Q 022757 236 DRLDTDILFGQNGGCKTLLVLS 257 (292)
Q Consensus 236 D~l~~Di~~a~~aG~~~i~V~~ 257 (292)
|++.+||.+|+++|+++++|+|
T Consensus 221 D~~~~Di~~a~~~G~~~i~v~t 242 (242)
T TIGR01459 221 DSFYTDILGANRLGIDTALVLT 242 (242)
T ss_pred CCcHHHHHHHHHCCCeEEEEeC
Confidence 9977999999999999999975
No 12
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.93 E-value=3.9e-25 Score=157.38 Aligned_cols=101 Identities=47% Similarity=0.780 Sum_probs=89.9
Q ss_pred eEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCCC
Q 022757 12 SFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFP 91 (292)
Q Consensus 12 i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~~ 91 (292)
|+||+|||||++++++|||.+++++|+++|++++|+|||+++++.++.++|+.+|+++++++|++|+.+++.|++++.
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~-- 78 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHK-- 78 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHT--
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcC--
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred CCCeEEEEcChhHHHHHHHcCCe
Q 022757 92 KDKKVYVVGEDGILKELELAGFQ 114 (292)
Q Consensus 92 ~~~~~~~~g~~~~~~~l~~~g~~ 114 (292)
.++++|++|.+++.+++++.|++
T Consensus 79 ~~~~v~vlG~~~l~~~l~~~G~e 101 (101)
T PF13344_consen 79 GGKKVYVLGSDGLREELREAGFE 101 (101)
T ss_dssp TSSEEEEES-HHHHHHHHHTTEE
T ss_pred CCCEEEEEcCHHHHHHHHHcCCC
Confidence 36899999999999999998864
No 13
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=99.92 E-value=3e-24 Score=174.68 Aligned_cols=250 Identities=21% Similarity=0.212 Sum_probs=188.1
Q ss_pred hceeEEEeeeeeeeCCccCCCHHHHHHHHHHC----CCcEEEEeCCCCCCHHHHHHHHH-cCCCCCCCCceechHHHHHH
Q 022757 9 LRLSFLTVMVIIWKGDKLIDGVPETLDMLRSK----GKRLVFVTNNSTKSRKQYGKKFE-TLGLTVTEEEIFASSFAAAA 83 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~----G~~~~~~Tn~s~r~~~~~~~~l~-~lG~~~~~~~i~~~~~~~~~ 83 (292)
.-+|.|||||||+.|.+++|++.+|+++|.++ .+|++|+||..+.+...-++.|. .||+++++++++.|+.....
T Consensus 35 ~fgfafDIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSHsP~r~ 114 (389)
T KOG1618|consen 35 TFGFAFDIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSHSPFRL 114 (389)
T ss_pred ceeEEEecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhcChHHH
Confidence 34899999999999999999999999999998 79999999999988888888885 69999999999999988877
Q ss_pred HHHhcCCCCCCeEEEEcChhHHHHHHHcCCeecCCCCCCCCccccCC-----------C-Ccc--CCCCCccEEEEeccC
Q 022757 84 YLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKP-----------G-FLM--EHDKDVGAVVVGFDR 149 (292)
Q Consensus 84 ~l~~~~~~~~~~~~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-----------~-~~~--~~~~~~~~v~~~~~~ 149 (292)
+.+.+ .++++++|....++..+..|++.+...++.....+.-+ . ... +....+++|++-.+.
T Consensus 115 l~~~~----~k~vLv~G~~~vr~vAegyGFk~Vvt~D~l~k~f~~ldP~t~~~~~~k~~~~~R~~~~~r~ieAv~~~~dP 190 (389)
T KOG1618|consen 115 LVEYH----YKRVLVVGQGSVREVAEGYGFKNVVTVDELAKYFPLLDPFTDLSRELKTTKLARDRELFRRIEAVLLLGDP 190 (389)
T ss_pred Hhhhh----hceEEEecCCcHHHHhhccCccceeeHHHHHHhCCCcccccchhHhhhcccchhccccccceeEEEEecCc
Confidence 77422 36799999999999999999875543222111111110 0 111 124567888876554
Q ss_pred CcCHHHHHHHHHHHHcC-------------CCcEEEEecCCcccccCCCCcccCcchHHHHHHhc----cC--CCceeec
Q 022757 150 YFNYYKVQYGTLCIREN-------------PGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGS----TQ--REPLVVG 210 (292)
Q Consensus 150 ~~~~~~~~~~~~~l~~~-------------~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~----~~--~~~~~~g 210 (292)
.-.-.+++-.+.++..+ +.++++++|.|..|+.+..+.+.|.|.|..+++.. ++ ......|
T Consensus 191 v~W~~dlQli~D~l~snG~~gt~~~a~~~~Phipiy~sN~DLlW~~e~~lpR~G~GaF~l~lesiy~kltGk~L~~~t~G 270 (389)
T KOG1618|consen 191 VRWETDLQLIMDVLLSNGSPGTGRLATGPYPHIPIYASNMDLLWMAEYKLPRFGHGAFRLCLESIYQKLTGKPLRYTTLG 270 (389)
T ss_pred hhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCceEEecccccccccCCCccccchHHHHHHHHHHHHhcCCcccccccC
Confidence 32223455555665541 23379999999999888888888888887766542 23 2346789
Q ss_pred CCcHHHHHHHHHHc--------C-CCCCcEEEECCCchhhHHHHH---------------hcCCeEEEEecCCCCh
Q 022757 211 KPSTFMMDYLANKF--------G-IQKSQICMVGDRLDTDILFGQ---------------NGGCKTLLVLSGVTSL 262 (292)
Q Consensus 211 KP~~~~~~~~~~~l--------g-i~~~~~~~iGD~l~~Di~~a~---------------~aG~~~i~V~~G~~~~ 262 (292)
||++-.|++|...+ + -+++...||||++.+|+.+|+ .-|+-+|+|.||++..
T Consensus 271 KPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TGV~~~ 346 (389)
T KOG1618|consen 271 KPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTGVYNG 346 (389)
T ss_pred CCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeeeeecC
Confidence 99999999886544 2 256889999999999999997 7799999999998873
No 14
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.87 E-value=6.4e-22 Score=161.98 Aligned_cols=130 Identities=23% Similarity=0.232 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE
Q 022757 152 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 231 (292)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~ 231 (292)
.|+.+.+.+..++...-...|+||+..... ...+...+...+|..+........ .||+|..+..+++.+|++|+++
T Consensus 90 ~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~-~~~l~~~gl~~~F~~i~g~~~~~~---~KP~P~~l~~~~~~~~~~~~~~ 165 (220)
T COG0546 90 LFPGVKELLAALKSAGYKLGIVTNKPEREL-DILLKALGLADYFDVIVGGDDVPP---PKPDPEPLLLLLEKLGLDPEEA 165 (220)
T ss_pred cCCCHHHHHHHHHhCCCeEEEEeCCcHHHH-HHHHHHhCCccccceEEcCCCCCC---CCcCHHHHHHHHHHhCCChhhe
Confidence 455677788888763334688898877543 223334566677776665333444 8999999999999999998899
Q ss_pred EEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHh
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 290 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~ 290 (292)
+||||+ .+||++|++||+++++|.||+...+.+. ...||++++++.||...+..
T Consensus 166 l~VGDs-~~Di~aA~~Ag~~~v~v~~g~~~~~~l~----~~~~d~vi~~~~el~~~l~~ 219 (220)
T COG0546 166 LMVGDS-LNDILAAKAAGVPAVGVTWGYNSREELA----QAGADVVIDSLAELLALLAE 219 (220)
T ss_pred EEECCC-HHHHHHHHHcCCCEEEEECCCCCCcchh----hcCCCEEECCHHHHHHHHhc
Confidence 999999 6999999999999999999986444443 26899999999999987653
No 15
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.86 E-value=2e-21 Score=161.03 Aligned_cols=125 Identities=19% Similarity=0.162 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE
Q 022757 152 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 231 (292)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~ 231 (292)
.|+.+.+.+..|+. +....++||.+... ...+...+|+.+..+.... .+||+|.+|..+++++|++|++|
T Consensus 114 ~~~gv~~~L~~L~~-~~~l~i~Tn~~~~~------~~~gl~~~fd~i~~~~~~~---~~KP~p~~~~~a~~~~~~~~~~~ 183 (238)
T PRK10748 114 VPQATHDTLKQLAK-KWPLVAITNGNAQP------ELFGLGDYFEFVLRAGPHG---RSKPFSDMYHLAAEKLNVPIGEI 183 (238)
T ss_pred CCccHHHHHHHHHc-CCCEEEEECCCchH------HHCCcHHhhceeEecccCC---cCCCcHHHHHHHHHHcCCChhHE
Confidence 34567778888875 34567889976532 2345566676665544444 48999999999999999999999
Q ss_pred EEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhH
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 288 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~ 288 (292)
+||||++.+||.+|+++||+++||..+...... .......|++.+.+|.||.+++
T Consensus 184 ~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~--~~~~~~~p~~~i~~l~el~~~~ 238 (238)
T PRK10748 184 LHVGDDLTTDVAGAIRCGMQACWINPENGDLMQ--TWDSRLLPHIEISRLASLTSLI 238 (238)
T ss_pred EEEcCCcHHHHHHHHHCCCeEEEEcCCCccccc--cccccCCCCEEECCHHHHHhhC
Confidence 999999669999999999999999876533111 1112357999999999998764
No 16
>PRK06769 hypothetical protein; Validated
Probab=99.86 E-value=1.1e-20 Score=148.63 Aligned_cols=79 Identities=28% Similarity=0.373 Sum_probs=65.8
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhc--cCCCCCCCCcEEeCCHhhHHHh
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSML--QSPNNSIQPDFYTNKISDFLSL 287 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~--~~~~~~~~pd~~~~~l~~l~~~ 287 (292)
.||+|.+|..++++++++|++|+||||+ .+|+++|+++|+.+|+|.+|.+..... ........|+++++++.|+.++
T Consensus 92 ~KP~p~~~~~~~~~l~~~p~~~i~IGD~-~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el~~~ 170 (173)
T PRK06769 92 RKPSTGMLLQAAEKHGLDLTQCAVIGDR-WTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDAVNW 170 (173)
T ss_pred CCCCHHHHHHHHHHcCCCHHHeEEEcCC-HHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHHHHH
Confidence 8999999999999999999999999999 599999999999999999987552110 0001135799999999999887
Q ss_pred HH
Q 022757 288 KA 289 (292)
Q Consensus 288 ~~ 289 (292)
|.
T Consensus 171 l~ 172 (173)
T PRK06769 171 IL 172 (173)
T ss_pred Hh
Confidence 63
No 17
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.85 E-value=1.2e-21 Score=161.47 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
|+.+.+.++.|++..-...++||...... ...+...+...+++.+. +.+....+||+|.+|..+++++|++|++|+
T Consensus 97 ~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~-~~~l~~~~l~~~f~~i~---~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l 172 (229)
T PRK13226 97 FDGVEGMLQRLECAGCVWGIVTNKPEYLA-RLILPQLGWEQRCAVLI---GGDTLAERKPHPLPLLVAAERIGVAPTDCV 172 (229)
T ss_pred CCCHHHHHHHHHHCCCeEEEECCCCHHHH-HHHHHHcCchhcccEEE---ecCcCCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 34466667777753223467888765321 11112223333333332 223333489999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeEEEEecCCCChh-hccCCCCCCCCcEEeCCHhhHHHhHH
Q 022757 233 MVGDRLDTDILFGQNGGCKTLLVLSGVTSLS-MLQSPNNSIQPDFYTNKISDFLSLKA 289 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~-~~~~~~~~~~pd~~~~~l~~l~~~~~ 289 (292)
+|||+ .+|+++|+++|+++|+|.+|..... .+. ...|+++++++.+|.+.++
T Consensus 173 ~IGDs-~~Di~aA~~aG~~~i~v~~g~~~~~~~~~----~~~~~~~i~~~~el~~~~~ 225 (229)
T PRK13226 173 YVGDD-ERDILAARAAGMPSVAALWGYRLHDDDPL----AWQADVLVEQPQLLWNPAT 225 (229)
T ss_pred EeCCC-HHHHHHHHHCCCcEEEEeecCCCCCcChh----hcCCCeeeCCHHHHHHHhc
Confidence 99999 5999999999999999999976332 222 2479999999999988764
No 18
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.85 E-value=2.4e-21 Score=162.29 Aligned_cols=126 Identities=17% Similarity=0.127 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHcCCCc-EEEEecCCcccccCCCCcccCcchHH-HHHHhccCCCceeecCCcHHHHHHHHHHcCCC-CC
Q 022757 153 YYKVQYGTLCIRENPGC-LFIATNRDAVTHLTDAQEWAGGGSMV-GAFVGSTQREPLVVGKPSTFMMDYLANKFGIQ-KS 229 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~-~~ 229 (292)
|+.+.+.+..++. +|+ ..|+||....... ..+...+...++ +.+.. .+....+||+|.+|..+++++|+. |+
T Consensus 101 ~pg~~e~L~~L~~-~g~~l~IvT~~~~~~~~-~~l~~~gl~~~f~d~ii~---~~~~~~~KP~p~~~~~a~~~l~~~~~~ 175 (253)
T TIGR01422 101 IPGVIEVIAYLRA-RGIKIGSTTGYTREMMD-VVAPEAALQGYRPDYNVT---TDDVPAGRPAPWMALKNAIELGVYDVA 175 (253)
T ss_pred CCCHHHHHHHHHH-CCCeEEEECCCcHHHHH-HHHHHHHhcCCCCceEEc---cccCCCCCCCHHHHHHHHHHcCCCCch
Confidence 4456777778875 354 5777887653321 111112222222 33322 233334899999999999999995 99
Q ss_pred cEEEECCCchhhHHHHHhcCCeEEEEecCCCC-----------------------hhhccCCCCCCCCcEEeCCHhhHHH
Q 022757 230 QICMVGDRLDTDILFGQNGGCKTLLVLSGVTS-----------------------LSMLQSPNNSIQPDFYTNKISDFLS 286 (292)
Q Consensus 230 ~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~-----------------------~~~~~~~~~~~~pd~~~~~l~~l~~ 286 (292)
+|++|||+ .+|+++|+++|+++|+|.+|.+. .+.+. +..||++++++.+|.+
T Consensus 176 ~~l~IGDs-~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~v~~~~~el~~ 250 (253)
T TIGR01422 176 ACVKVGDT-VPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLK----AAGAHYVIDTLAELPA 250 (253)
T ss_pred heEEECCc-HHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHH----hcCCCEehhcHHHHHH
Confidence 99999999 59999999999999999999762 23333 2579999999999987
Q ss_pred hH
Q 022757 287 LK 288 (292)
Q Consensus 287 ~~ 288 (292)
++
T Consensus 251 ~~ 252 (253)
T TIGR01422 251 VI 252 (253)
T ss_pred hh
Confidence 75
No 19
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.85 E-value=7.3e-21 Score=156.20 Aligned_cols=125 Identities=26% Similarity=0.296 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
++.+.+.+..++.+.-..+++||...... .......+...+++.+..+.... .+||+|.+|..+++++|+++++|+
T Consensus 96 ~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~-~~~l~~~~l~~~f~~i~~~~~~~---~~KP~~~~~~~~~~~~~~~~~~~~ 171 (221)
T TIGR02253 96 YPGVRDTLMELRESGYRLGIITDGLPVKQ-WEKLERLGVRDFFDAVITSEEEG---VEKPHPKIFYAALKRLGVKPEEAV 171 (221)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCCchHHH-HHHHHhCChHHhccEEEEeccCC---CCCCCHHHHHHHHHHcCCChhhEE
Confidence 44567777888764334678898875332 12223344445555544433333 389999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhH
Q 022757 233 MVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDF 284 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l 284 (292)
+|||++.+|+.+|+++|+++|+|.+|........ ....|+++++++.+|
T Consensus 172 ~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~---~~~~~~~~i~~~~el 220 (221)
T TIGR02253 172 MVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDD---VYPYPDYEISSLREL 220 (221)
T ss_pred EECCChHHHHHHHHHCCCEEEEECCCCCcccccc---cccCCCeeeCcHHhh
Confidence 9999955899999999999999998876432211 124689999999886
No 20
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.85 E-value=3.5e-21 Score=158.01 Aligned_cols=127 Identities=20% Similarity=0.191 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcc--hHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCC-CC
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGG--SMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQ-KS 229 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~-~~ 229 (292)
++.+.+.+..++...-...++||....... ..+...+.. .++..+..+... ..+||+|.+|..+++++|++ |+
T Consensus 89 ~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~-~~l~~~~l~~~~~f~~i~~~~~~---~~~KP~p~~~~~a~~~~~~~~~~ 164 (220)
T TIGR03351 89 LPGAEEAFRSLRSSGIKVALTTGFDRDTAE-RLLEKLGWTVGDDVDAVVCPSDV---AAGRPAPDLILRAMELTGVQDVQ 164 (220)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCCchHHHH-HHHHHhhhhhhccCCEEEcCCcC---CCCCCCHHHHHHHHHHcCCCChh
Confidence 344667777777533335777887753321 111122222 334433333333 34899999999999999997 79
Q ss_pred cEEEECCCchhhHHHHHhcCCeE-EEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhH
Q 022757 230 QICMVGDRLDTDILFGQNGGCKT-LLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 288 (292)
Q Consensus 230 ~~~~iGD~l~~Di~~a~~aG~~~-i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~ 288 (292)
+|++|||+ .+|+++|+++||.+ ++|.+|....+.+.. ..|+++++++.+|.+++
T Consensus 165 ~~~~igD~-~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~----~~~~~~i~~~~~l~~~~ 219 (220)
T TIGR03351 165 SVAVAGDT-PNDLEAGINAGAGAVVGVLTGAHDAEELSR----HPHTHVLDSVADLPALL 219 (220)
T ss_pred HeEEeCCC-HHHHHHHHHCCCCeEEEEecCCCcHHHHhh----cCCceeecCHHHHHHhh
Confidence 99999999 59999999999999 999998776655543 47999999999998765
No 21
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.84 E-value=3.2e-21 Score=157.51 Aligned_cols=128 Identities=25% Similarity=0.305 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcCCCc-EEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE
Q 022757 153 YYKVQYGTLCIRENPGC-LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 231 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~ 231 (292)
|+.+.+.++.+++ +|+ ..++||...... ...+...+...+++.+.. .+....+||+|.+|..++++++++++++
T Consensus 84 ~~g~~~~l~~L~~-~g~~~~i~S~~~~~~~-~~~l~~~gl~~~f~~i~~---~~~~~~~Kp~p~~~~~~~~~~~~~~~~~ 158 (214)
T PRK13288 84 YETVYETLKTLKK-QGYKLGIVTTKMRDTV-EMGLKLTGLDEFFDVVIT---LDDVEHAKPDPEPVLKALELLGAKPEEA 158 (214)
T ss_pred CcCHHHHHHHHHH-CCCeEEEEeCCCHHHH-HHHHHHcCChhceeEEEe---cCcCCCCCCCcHHHHHHHHHcCCCHHHE
Confidence 4456677777775 455 577788765322 112223344444444433 3333448999999999999999999999
Q ss_pred EEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHh
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 290 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~ 290 (292)
++|||+ .+|+++|+++|+++++|.+|....+.+.. ..|+++++++.++.+++..
T Consensus 159 ~~iGDs-~~Di~aa~~aG~~~i~v~~g~~~~~~l~~----~~~~~~i~~~~~l~~~i~~ 212 (214)
T PRK13288 159 LMVGDN-HHDILAGKNAGTKTAGVAWTIKGREYLEQ----YKPDFMLDKMSDLLAIVGD 212 (214)
T ss_pred EEECCC-HHHHHHHHHCCCeEEEEcCCCCCHHHHhh----cCcCEEECCHHHHHHHHhh
Confidence 999999 59999999999999999999776655432 4799999999999987753
No 22
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.84 E-value=5.8e-21 Score=161.10 Aligned_cols=128 Identities=17% Similarity=0.096 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchH-HHHHHhccCCCceeecCCcHHHHHHHHHHcCCC-CCc
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSM-VGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQ-KSQ 230 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~-~~~ 230 (292)
|+.+.+.+..|++..-...|+||....... ..+...+...+ ++.+..+ +....+||+|.+|..+++++|+. +++
T Consensus 103 ~pg~~elL~~L~~~g~~l~I~T~~~~~~~~-~~l~~~~l~~~~~d~i~~~---~~~~~~KP~p~~~~~a~~~l~~~~~~e 178 (267)
T PRK13478 103 IPGVLEVIAALRARGIKIGSTTGYTREMMD-VVVPLAAAQGYRPDHVVTT---DDVPAGRPYPWMALKNAIELGVYDVAA 178 (267)
T ss_pred CCCHHHHHHHHHHCCCEEEEEcCCcHHHHH-HHHHHHhhcCCCceEEEcC---CcCCCCCCChHHHHHHHHHcCCCCCcc
Confidence 445667777777533335777877663311 11111111112 2323222 23334899999999999999996 699
Q ss_pred EEEECCCchhhHHHHHhcCCeEEEEecCCCC-----------------------hhhccCCCCCCCCcEEeCCHhhHHHh
Q 022757 231 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTS-----------------------LSMLQSPNNSIQPDFYTNKISDFLSL 287 (292)
Q Consensus 231 ~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~-----------------------~~~~~~~~~~~~pd~~~~~l~~l~~~ 287 (292)
|+||||+ .+|+++|+++|+++|+|.+|.+. .+.+.. ..||++++++.+|.++
T Consensus 179 ~l~IGDs-~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~a~~vi~~~~~l~~~ 253 (267)
T PRK13478 179 CVKVDDT-VPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRA----AGAHYVIDTIADLPAV 253 (267)
T ss_pred eEEEcCc-HHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHH----cCCCeehhhHHHHHHH
Confidence 9999999 59999999999999999999763 133332 5799999999999876
Q ss_pred HH
Q 022757 288 KA 289 (292)
Q Consensus 288 ~~ 289 (292)
+.
T Consensus 254 l~ 255 (267)
T PRK13478 254 IA 255 (267)
T ss_pred HH
Confidence 64
No 23
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.84 E-value=1.1e-20 Score=157.81 Aligned_cols=124 Identities=16% Similarity=0.212 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
|+.+.+.+..++...-...|+||...... ...+...+...+|+.+..+... ..+||+|.+|..+++++|++|++|+
T Consensus 111 ~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~-~~~l~~~gl~~~Fd~ii~~~d~---~~~KP~Pe~~~~a~~~l~~~p~~~l 186 (260)
T PLN03243 111 RPGSREFVQALKKHEIPIAVASTRPRRYL-ERAIEAVGMEGFFSVVLAAEDV---YRGKPDPEMFMYAAERLGFIPERCI 186 (260)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCcCHHHH-HHHHHHcCCHhhCcEEEecccC---CCCCCCHHHHHHHHHHhCCChHHeE
Confidence 44567777888753334578888875332 1222333444455555444333 3489999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhH
Q 022757 233 MVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 288 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~ 288 (292)
+|||+ .+|+++|+++||++|+|. |......+ ..|+++++++.++....
T Consensus 187 ~IgDs-~~Di~aA~~aG~~~i~v~-g~~~~~~l------~~ad~vi~~~~el~~~~ 234 (260)
T PLN03243 187 VFGNS-NSSVEAAHDGCMKCVAVA-GKHPVYEL------SAGDLVVRRLDDLSVVD 234 (260)
T ss_pred EEcCC-HHHHHHHHHcCCEEEEEe-cCCchhhh------ccCCEEeCCHHHHHHHH
Confidence 99999 699999999999999996 65544433 25899999999987543
No 24
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.84 E-value=1.3e-19 Score=143.27 Aligned_cols=71 Identities=27% Similarity=0.304 Sum_probs=62.2
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeE-EEEecCCCChhhccCCCCCCCCcEEeCCHhhHHH
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKT-LLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLS 286 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~-i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~ 286 (292)
+||+|.+|..+++++|+++++|+||||+ .+||++|+++|+++ ++|.+|.+..... ...||++++|+.+|.+
T Consensus 105 ~KP~p~~~~~a~~~~~~~~~~~v~VGDs-~~Di~aA~~aG~~~~i~v~~g~~~~~~~-----~~~ad~~i~~~~el~~ 176 (176)
T TIGR00213 105 RKPKPGMLLQARKELHIDMAQSYMVGDK-LEDMQAGVAAKVKTNVLVRTGKPITPEA-----ENIADWVLNSLADLPQ 176 (176)
T ss_pred CCCCHHHHHHHHHHcCcChhhEEEEcCC-HHHHHHHHHCCCcEEEEEecCCcccccc-----cccCCEEeccHHHhhC
Confidence 8999999999999999999999999999 59999999999998 8999986642221 2469999999999863
No 25
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.84 E-value=3.4e-21 Score=160.58 Aligned_cols=122 Identities=15% Similarity=0.055 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
|+.+.+.+..|+...-...|+||...... ...+...+...+|+.+..+..... +||+|.+|..+++++|++|++|+
T Consensus 110 ~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~-~~~l~~~gl~~~Fd~iv~~~~~~~---~KP~p~~~~~a~~~~~~~~~~~l 185 (248)
T PLN02770 110 LNGLYKLKKWIEDRGLKRAAVTNAPRENA-ELMISLLGLSDFFQAVIIGSECEH---AKPHPDPYLKALEVLKVSKDHTF 185 (248)
T ss_pred CccHHHHHHHHHHcCCeEEEEeCCCHHHH-HHHHHHcCChhhCcEEEecCcCCC---CCCChHHHHHHHHHhCCChhHEE
Confidence 44567777788753333588899876432 222233444555555544444444 89999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhH
Q 022757 233 MVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDF 284 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l 284 (292)
+|||+ .+|+++|+++|+++|+|.+|. ..+.+.. ..||++++++.++
T Consensus 186 ~vgDs-~~Di~aA~~aGi~~i~v~~g~-~~~~l~~----~~a~~vi~~~~e~ 231 (248)
T PLN02770 186 VFEDS-VSGIKAGVAAGMPVVGLTTRN-PESLLME----AKPTFLIKDYEDP 231 (248)
T ss_pred EEcCC-HHHHHHHHHCCCEEEEEeCCC-CHHHHhh----cCCCEEeccchhh
Confidence 99999 599999999999999999985 3343332 5799999999983
No 26
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.83 E-value=7.7e-21 Score=156.11 Aligned_cols=125 Identities=10% Similarity=0.045 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE
Q 022757 152 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 231 (292)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~ 231 (292)
.|+.+.+.+..+++.....+++||...... .......+...+++.+..+ +....+||+|.+|..+++++|++|++|
T Consensus 93 ~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~-~~~l~~~~l~~~f~~~~~~---~~~~~~Kp~~~~~~~~~~~~~~~~~~~ 168 (222)
T PRK10826 93 LLPGVREALALCKAQGLKIGLASASPLHML-EAVLTMFDLRDYFDALASA---EKLPYSKPHPEVYLNCAAKLGVDPLTC 168 (222)
T ss_pred CCCCHHHHHHHHHHCCCeEEEEeCCcHHHH-HHHHHhCcchhcccEEEEc---ccCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 355677788888763333577788765332 1112223444455444333 333459999999999999999999999
Q ss_pred EEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHH
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLS 286 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~ 286 (292)
++|||+. +|+++|+++|+++|+|.++....+... ..+++++.|+.++.+
T Consensus 169 ~~igDs~-~Di~aA~~aG~~~i~v~~~~~~~~~~~-----~~~~~~~~~~~dl~~ 217 (222)
T PRK10826 169 VALEDSF-NGMIAAKAARMRSIVVPAPEQQNDPRW-----ALADVKLESLTELTA 217 (222)
T ss_pred EEEcCCh-hhHHHHHHcCCEEEEecCCccCchhhh-----hhhheeccCHHHHhh
Confidence 9999995 999999999999999988765433211 358999999999864
No 27
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.83 E-value=9.7e-21 Score=153.61 Aligned_cols=128 Identities=22% Similarity=0.218 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
|+...+.++.+++.....+++||...... .......+...+++.+..+.. ...+||+|.+|..+++++|+++++|+
T Consensus 77 ~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~-~~~l~~~~l~~~f~~i~~~~~---~~~~KP~~~~~~~~~~~~~~~~~~~l 152 (205)
T TIGR01454 77 FPGVPELLAELRADGVGTAIATGKSGPRA-RSLLEALGLLPLFDHVIGSDE---VPRPKPAPDIVREALRLLDVPPEDAV 152 (205)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCchHHH-HHHHHHcCChhheeeEEecCc---CCCCCCChHHHHHHHHHcCCChhheE
Confidence 34466677777754334678888765432 111222344444444433322 33489999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHH
Q 022757 233 MVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 289 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~ 289 (292)
||||+ .+|+++|+++|+++++|.+|.++.+.+.. ..|+++++++.+|.++++
T Consensus 153 ~igD~-~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~----~~~~~~~~~~~~l~~~~~ 204 (205)
T TIGR01454 153 MVGDA-VTDLASARAAGTATVAALWGEGDAGELLA----ARPDFLLRKPQSLLALCR 204 (205)
T ss_pred EEcCC-HHHHHHHHHcCCeEEEEEecCCChhhhhh----cCCCeeeCCHHHHHHHhh
Confidence 99999 59999999999999999999988766543 579999999999988764
No 28
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.82 E-value=8.5e-19 Score=139.27 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=65.2
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCC--cEEeCCHhhHHHh
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQP--DFYTNKISDFLSL 287 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~p--d~~~~~l~~l~~~ 287 (292)
+||+|.+|..+++++|+++++|+||||+ .+|+.+|+++|+.+++|.+|........ ..| +++++++.++.++
T Consensus 102 ~KP~p~~~~~~~~~l~~~~~~~~~VgDs-~~Di~~A~~aG~~~i~v~~g~~~~~~~~-----~~~~~~~ii~~l~el~~~ 175 (181)
T PRK08942 102 RKPKPGMLLSIAERLNIDLAGSPMVGDS-LRDLQAAAAAGVTPVLVRTGKGVTTLAE-----GAAPGTWVLDSLADLPQA 175 (181)
T ss_pred CCCCHHHHHHHHHHcCCChhhEEEEeCC-HHHHHHHHHCCCeEEEEcCCCCchhhhc-----ccCCCceeecCHHHHHHH
Confidence 8999999999999999999999999999 5999999999999999999876433221 345 9999999999987
Q ss_pred HHh
Q 022757 288 KAA 290 (292)
Q Consensus 288 ~~~ 290 (292)
+..
T Consensus 176 l~~ 178 (181)
T PRK08942 176 LKK 178 (181)
T ss_pred HHh
Confidence 653
No 29
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.82 E-value=2.7e-20 Score=153.28 Aligned_cols=130 Identities=20% Similarity=0.251 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
++.+.+.+..+++..-..+++||....... ......+...+++.+. +.+....+||+|.+|..+++++++++++|+
T Consensus 95 ~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~-~~l~~~~l~~~f~~~~---~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 170 (226)
T PRK13222 95 YPGVKETLAALKAAGYPLAVVTNKPTPFVA-PLLEALGIADYFSVVI---GGDSLPNKKPDPAPLLLACEKLGLDPEEML 170 (226)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCCHHHHH-HHHHHcCCccCccEEE---cCCCCCCCCcChHHHHHHHHHcCCChhheE
Confidence 344666777777533335677887653321 1111223223333332 223333489999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHhh
Q 022757 233 MVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAAA 291 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~~ 291 (292)
+|||+ .+|+++|+++|+.+|+|.+|....+++. ...|+|+++++.+|..++..+
T Consensus 171 ~igD~-~~Di~~a~~~g~~~i~v~~g~~~~~~~~----~~~~~~~i~~~~~l~~~l~~~ 224 (226)
T PRK13222 171 FVGDS-RNDIQAARAAGCPSVGVTYGYNYGEPIA----LSEPDVVIDHFAELLPLLGLA 224 (226)
T ss_pred EECCC-HHHHHHHHHCCCcEEEECcCCCCccchh----hcCCCEEECCHHHHHHHHHHh
Confidence 99999 5999999999999999999876544432 247999999999999988765
No 30
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.82 E-value=3.1e-20 Score=156.57 Aligned_cols=128 Identities=17% Similarity=0.205 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
|+.+.+.+..++...-..+++||...... .......+...+++.+.. .+....+||+|.+|..+++++|+++++|+
T Consensus 103 ~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~-~~~l~~~~i~~~f~~i~~---~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l 178 (272)
T PRK13223 103 YPGVRDTLKWLKKQGVEMALITNKPERFV-APLLDQMKIGRYFRWIIG---GDTLPQKKPDPAALLFVMKMAGVPPSQSL 178 (272)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCcHHHH-HHHHHHcCcHhhCeEEEe---cCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence 44566777777653234577788765321 111112233444443322 23334489999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHH
Q 022757 233 MVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 289 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~ 289 (292)
+|||+ .+||++|+++|+++++|.+|.+..+.+.. ..||++++++.+|.+++.
T Consensus 179 ~IGD~-~~Di~aA~~aGi~~i~v~~G~~~~~~l~~----~~~~~vi~~l~el~~~~~ 230 (272)
T PRK13223 179 FVGDS-RSDVLAAKAAGVQCVALSYGYNHGRPIAE----ESPALVIDDLRALLPGCA 230 (272)
T ss_pred EECCC-HHHHHHHHHCCCeEEEEecCCCCchhhhh----cCCCEEECCHHHHHHHHh
Confidence 99999 69999999999999999999876555432 479999999999987654
No 31
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.81 E-value=4.4e-20 Score=124.53 Aligned_cols=74 Identities=35% Similarity=0.581 Sum_probs=67.9
Q ss_pred ecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhH
Q 022757 209 VGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDF 284 (292)
Q Consensus 209 ~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l 284 (292)
+|||+|.+|..+++++++++++++||||++.+||++|+++|+++|+|.+|.++.+++.. ...+|||++++|.|+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~--~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEK--AEHKPDYVVDDLKEA 75 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHH--SSSTTSEEESSGGGH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhc--cCCCCCEEECCHHhC
Confidence 69999999999999999999999999999779999999999999999999998877642 236999999999886
No 32
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.81 E-value=3.6e-20 Score=151.19 Aligned_cols=127 Identities=20% Similarity=0.278 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
|+.+.+.++.++...-...++||...... ...+...+...+++.+. +.+....+||+|.+|..+++++|++|++|+
T Consensus 87 ~~g~~~~L~~l~~~g~~~~i~S~~~~~~~-~~~l~~~~l~~~f~~~~---~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 162 (213)
T TIGR01449 87 FPGVEATLGALRAKGLRLGLVTNKPTPLA-RPLLELLGLAKYFSVLI---GGDSLAQRKPHPDPLLLAAERLGVAPQQMV 162 (213)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCCHHHH-HHHHHHcCcHhhCcEEE---ecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence 44566777777753334577788765332 11122233333443332 333334489999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhH
Q 022757 233 MVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 288 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~ 288 (292)
+|||+ .+|+++|+++|+++++|.+|.+..+.+.. ..|+++++++.++..++
T Consensus 163 ~igDs-~~d~~aa~~aG~~~i~v~~g~~~~~~l~~----~~a~~~i~~~~~l~~~~ 213 (213)
T TIGR01449 163 YVGDS-RVDIQAARAAGCPSVLLTYGYRYGEAIDL----LPPDVLYDSLNELPPLL 213 (213)
T ss_pred EeCCC-HHHHHHHHHCCCeEEEEccCCCCCcchhh----cCCCeEeCCHHHHHhhC
Confidence 99999 69999999999999999999876544432 47999999999998653
No 33
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.81 E-value=1.6e-19 Score=156.18 Aligned_cols=121 Identities=15% Similarity=0.123 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
|+.+.+.+..|+.+.-...|+||...... ...+...+...+|+.+..+..... +||+|.+|..+++++|++|++|+
T Consensus 218 ~pGa~ElL~~Lk~~GiklaIaSn~~~~~~-~~~L~~lgL~~yFd~Iv~sddv~~---~KP~Peifl~A~~~lgl~Peecl 293 (381)
T PLN02575 218 RTGSQEFVNVLMNYKIPMALVSTRPRKTL-ENAIGSIGIRGFFSVIVAAEDVYR---GKPDPEMFIYAAQLLNFIPERCI 293 (381)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCHHHH-HHHHHHcCCHHHceEEEecCcCCC---CCCCHHHHHHHHHHcCCCcccEE
Confidence 45577788888764334688888876432 222233455566666655444444 89999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHH
Q 022757 233 MVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFL 285 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~ 285 (292)
||||+ .+||++|+++||++|+|.++. ....+ ..+|++++++.||.
T Consensus 294 ~IGDS-~~DIeAAk~AGm~~IgV~~~~-~~~~l------~~Ad~iI~s~~EL~ 338 (381)
T PLN02575 294 VFGNS-NQTVEAAHDARMKCVAVASKH-PIYEL------GAADLVVRRLDELS 338 (381)
T ss_pred EEcCC-HHHHHHHHHcCCEEEEECCCC-ChhHh------cCCCEEECCHHHHH
Confidence 99999 599999999999999998754 22222 25899999999984
No 34
>PRK11587 putative phosphatase; Provisional
Probab=99.80 E-value=8.6e-20 Score=149.42 Aligned_cols=120 Identities=17% Similarity=0.114 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
|+.+.+.+..|++..-...++||...... .......+.. .+..+.. .+.....||+|.+|..+++++|++|++|+
T Consensus 85 ~pg~~e~L~~L~~~g~~~~ivTn~~~~~~-~~~l~~~~l~-~~~~i~~---~~~~~~~KP~p~~~~~~~~~~g~~p~~~l 159 (218)
T PRK11587 85 LPGAIALLNHLNKLGIPWAIVTSGSVPVA-SARHKAAGLP-APEVFVT---AERVKRGKPEPDAYLLGAQLLGLAPQECV 159 (218)
T ss_pred CcCHHHHHHHHHHcCCcEEEEcCCCchHH-HHHHHhcCCC-CccEEEE---HHHhcCCCCCcHHHHHHHHHcCCCcccEE
Confidence 45567777888753334577788765321 1111112221 1222221 22233489999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHH
Q 022757 233 MVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFL 285 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~ 285 (292)
+|||+ .+|+++|+++|+++|+|.+|.... . ...|+++++++.+|.
T Consensus 160 ~igDs-~~di~aA~~aG~~~i~v~~~~~~~-~------~~~~~~~~~~~~el~ 204 (218)
T PRK11587 160 VVEDA-PAGVLSGLAAGCHVIAVNAPADTP-R------LDEVDLVLHSLEQLT 204 (218)
T ss_pred EEecc-hhhhHHHHHCCCEEEEECCCCchh-h------hccCCEEecchhhee
Confidence 99999 599999999999999998765322 1 136999999999874
No 35
>PLN02940 riboflavin kinase
Probab=99.79 E-value=1.2e-19 Score=159.60 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCc-ccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQE-WAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 231 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~ 231 (292)
++.+.+.++.+++..-...|+||....... ..+. ..+...+++.+..+.. ...+||+|.+|..+++++|++|++|
T Consensus 95 ~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~-~~l~~~~gl~~~Fd~ii~~d~---v~~~KP~p~~~~~a~~~lgv~p~~~ 170 (382)
T PLN02940 95 LPGANRLIKHLKSHGVPMALASNSPRANIE-AKISCHQGWKESFSVIVGGDE---VEKGKPSPDIFLEAAKRLNVEPSNC 170 (382)
T ss_pred CcCHHHHHHHHHHCCCcEEEEeCCcHHHHH-HHHHhccChHhhCCEEEehhh---cCCCCCCHHHHHHHHHHcCCChhHE
Confidence 445667778887643346788888654321 1111 2343444444433333 3348999999999999999999999
Q ss_pred EEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHH
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFL 285 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~ 285 (292)
++|||+ .+|+++|+++|+++|+|.+|...... ...|+++++++.++.
T Consensus 171 l~VGDs-~~Di~aA~~aGi~~I~v~~g~~~~~~------~~~ad~~i~sl~el~ 217 (382)
T PLN02940 171 LVIEDS-LPGVMAGKAAGMEVIAVPSIPKQTHL------YSSADEVINSLLDLQ 217 (382)
T ss_pred EEEeCC-HHHHHHHHHcCCEEEEECCCCcchhh------ccCccEEeCCHhHcC
Confidence 999999 59999999999999999988553322 146999999999875
No 36
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.79 E-value=9.9e-19 Score=143.79 Aligned_cols=125 Identities=19% Similarity=0.235 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHc-CCCCCcE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKF-GIQKSQI 231 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~l-gi~~~~~ 231 (292)
++.+.+.+..++.. ....++||...... ...+...+...+++.+..+.... ..||+|.+|..+++++ |++|++|
T Consensus 99 ~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~-~~~l~~~~l~~~fd~i~~~~~~~---~~KP~~~~~~~~~~~~~~~~~~~~ 173 (224)
T TIGR02254 99 LPGAFELMENLQQK-FRLYIVTNGVRETQ-YKRLRKSGLFPFFDDIFVSEDAG---IQKPDKEIFNYALERMPKFSKEEV 173 (224)
T ss_pred CccHHHHHHHHHhc-CcEEEEeCCchHHH-HHHHHHCCcHhhcCEEEEcCccC---CCCCCHHHHHHHHHHhcCCCchhe
Confidence 34466677778765 55688898765332 12223345555666554443333 4899999999999999 9999999
Q ss_pred EEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhH
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 288 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~ 288 (292)
++|||+..+|+++|+++|+.+|++.+|..... . ...|+++++++.+|.++|
T Consensus 174 v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~--~----~~~~~~~~~~~~el~~~~ 224 (224)
T TIGR02254 174 LMIGDSLTADIKGGQNAGLDTCWMNPDMHPNP--D----DIIPTYEIRSLEELYEIL 224 (224)
T ss_pred EEECCCcHHHHHHHHHCCCcEEEECCCCCCCC--C----CCCCceEECCHHHHHhhC
Confidence 99999954799999999999999988754421 1 247999999999998764
No 37
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.79 E-value=4.6e-19 Score=146.25 Aligned_cols=129 Identities=22% Similarity=0.244 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE
Q 022757 152 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 231 (292)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~ 231 (292)
.++...+.++.++.. -...+.||...... ...+...|...+|+.+..+...+. .||+|.+|+.+++++|++|+++
T Consensus 100 ~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~-~~~l~~~gl~~~Fd~v~~s~~~g~---~KP~~~~f~~~~~~~g~~p~~~ 174 (229)
T COG1011 100 DYPEALEALKELGKK-YKLGILTNGARPHQ-ERKLRQLGLLDYFDAVFISEDVGV---AKPDPEIFEYALEKLGVPPEEA 174 (229)
T ss_pred cChhHHHHHHHHHhh-ccEEEEeCCChHHH-HHHHHHcCChhhhheEEEeccccc---CCCCcHHHHHHHHHcCCCcceE
Confidence 445566666666542 23688899654332 222334456678888777766665 8999999999999999999999
Q ss_pred EEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHh
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 290 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~ 290 (292)
+||||++.|||.+|+++||++||+..+.... . + .. ..|++.+.++.++.+++..
T Consensus 175 l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~-~-~--~~-~~~~~~i~~l~~l~~~~~~ 228 (229)
T COG1011 175 LFVGDSLENDILGARALGMKTVWINRGGKPL-P-D--AL-EAPDYEISSLAELLDLLER 228 (229)
T ss_pred EEECCChhhhhHHHHhcCcEEEEECCCCCCC-C-C--Cc-cCCceEEcCHHHHHHHHhh
Confidence 9999999999999999999999998765433 1 1 11 5799999999999988764
No 38
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.79 E-value=4.5e-19 Score=144.90 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEE
Q 022757 154 YKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICM 233 (292)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~ 233 (292)
+.+.+.+..|+.+.-...++||..+... ...+...+.-.+|+.+.....+.. +||+|++|..++++||++|++|+.
T Consensus 89 pGv~~~l~~L~~~~i~~avaS~s~~~~~-~~~L~~~gl~~~f~~~v~~~dv~~---~KP~Pd~yL~Aa~~Lgv~P~~Cvv 164 (221)
T COG0637 89 PGVVELLEQLKARGIPLAVASSSPRRAA-ERVLARLGLLDYFDVIVTADDVAR---GKPAPDIYLLAAERLGVDPEECVV 164 (221)
T ss_pred ccHHHHHHHHHhcCCcEEEecCChHHHH-HHHHHHccChhhcchhccHHHHhc---CCCCCHHHHHHHHHcCCChHHeEE
Confidence 3456667777753333456666654221 222334555667777766665555 899999999999999999999999
Q ss_pred ECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHh
Q 022757 234 VGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 290 (292)
Q Consensus 234 iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~ 290 (292)
|.|+ .+.|++|++|||.+|.|..+.... .... ......+.+..++.++...+.+
T Consensus 165 iEDs-~~Gi~Aa~aAGm~vv~v~~~~~~~-~~~~-~~~~~~~~~~~~~~~l~~~~~~ 218 (221)
T COG0637 165 VEDS-PAGIQAAKAAGMRVVGVPAGHDRP-HLDP-LDAHGADTVLLDLAELPALLEA 218 (221)
T ss_pred Eecc-hhHHHHHHHCCCEEEEecCCCCcc-ccch-hhhhhcchhhccHHHHHHHHHh
Confidence 9999 599999999999999998744421 1111 1224678888888888766553
No 39
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.79 E-value=6e-19 Score=149.70 Aligned_cols=125 Identities=11% Similarity=0.002 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE
Q 022757 152 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 231 (292)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~ 231 (292)
.++.+.+.+..++...-...|+||....... ..+.......++..+... ..+....+||+|.+|..+++++|++|++|
T Consensus 145 l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~-~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 222 (286)
T PLN02779 145 LRPGVLRLMDEALAAGIKVAVCSTSNEKAVS-KIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLAAETLGVDPSRC 222 (286)
T ss_pred chhhHHHHHHHHHHCCCeEEEEeCCCHHHHH-HHHHHhccccccCceEEE-eccccCCCCCCHHHHHHHHHHhCcChHHE
Confidence 3556777777777532235777887653211 000000000111111111 22233458999999999999999999999
Q ss_pred EEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHH
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFL 285 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~ 285 (292)
++|||+ .+|+++|+++||++|+|.+|.+..+.+ ..||++++++.++.
T Consensus 223 l~IGDs-~~Di~aA~~aG~~~i~v~~g~~~~~~l------~~ad~vi~~~~~l~ 269 (286)
T PLN02779 223 VVVEDS-VIGLQAAKAAGMRCIVTKSSYTADEDF------SGADAVFDCLGDVP 269 (286)
T ss_pred EEEeCC-HHhHHHHHHcCCEEEEEccCCcccccc------CCCcEEECChhhcc
Confidence 999999 599999999999999999998765543 25899999999874
No 40
>PRK09449 dUMP phosphatase; Provisional
Probab=99.79 E-value=9.5e-19 Score=143.93 Aligned_cols=126 Identities=25% Similarity=0.238 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCC-CCcE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQ-KSQI 231 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~-~~~~ 231 (292)
|+.+.+.+..|+. +....++||...... ...+...+...+|+.+..+..... .||+|.+|..+++++|+. +++|
T Consensus 97 ~~g~~~~L~~L~~-~~~~~i~Tn~~~~~~-~~~l~~~~l~~~fd~v~~~~~~~~---~KP~p~~~~~~~~~~~~~~~~~~ 171 (224)
T PRK09449 97 LPGAVELLNALRG-KVKMGIITNGFTELQ-QVRLERTGLRDYFDLLVISEQVGV---AKPDVAIFDYALEQMGNPDRSRV 171 (224)
T ss_pred CccHHHHHHHHHh-CCeEEEEeCCcHHHH-HHHHHhCChHHHcCEEEEECccCC---CCCCHHHHHHHHHHcCCCCcccE
Confidence 4557777888873 344578899765332 112233344455555544444443 899999999999999985 5899
Q ss_pred EEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHH
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 289 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~ 289 (292)
++|||++.+|+++|+++|++++++.++... ... ...||++++++.+|.+++.
T Consensus 172 ~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~--~~~----~~~~~~~i~~~~el~~~l~ 223 (224)
T PRK09449 172 LMVGDNLHSDILGGINAGIDTCWLNAHGRE--QPE----GIAPTYQVSSLSELEQLLC 223 (224)
T ss_pred EEEcCCcHHHHHHHHHCCCcEEEECCCCCC--CCC----CCCCeEEECCHHHHHHHHh
Confidence 999999647999999999999999754221 111 2469999999999998765
No 41
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.79 E-value=7.9e-20 Score=150.05 Aligned_cols=122 Identities=11% Similarity=0.031 Sum_probs=83.6
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHH-HHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEE
Q 022757 155 KVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVG-AFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICM 233 (292)
Q Consensus 155 ~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~ 233 (292)
.+.+.+..++ -...++||...... ...+...+...+|. .+....... .+||+|++|..+++++|++|++|++
T Consensus 92 gv~~~L~~L~---~~~~ivTn~~~~~~-~~~l~~~~l~~~F~~~v~~~~~~~---~~KP~p~~~~~a~~~~~~~p~~~l~ 164 (221)
T PRK10563 92 GANALLESIT---VPMCVVSNGPVSKM-QHSLGKTGMLHYFPDKLFSGYDIQ---RWKPDPALMFHAAEAMNVNVENCIL 164 (221)
T ss_pred CHHHHHHHcC---CCEEEEeCCcHHHH-HHHHHhcChHHhCcceEeeHHhcC---CCCCChHHHHHHHHHcCCCHHHeEE
Confidence 3455555552 34677888765322 12222334444553 222222233 3899999999999999999999999
Q ss_pred ECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHh
Q 022757 234 VGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 290 (292)
Q Consensus 234 iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~ 290 (292)
|||+ .+||++|+++|++++++.++.+... .. ..++.+++++.||.+++.+
T Consensus 165 igDs-~~di~aA~~aG~~~i~~~~~~~~~~-~~-----~~~~~~~~~~~~l~~~~~~ 214 (221)
T PRK10563 165 VDDS-SAGAQSGIAAGMEVFYFCADPHNKP-ID-----HPLVTTFTDLAQLPELWKA 214 (221)
T ss_pred EeCc-HhhHHHHHHCCCEEEEECCCCCCcc-hh-----hhhhHHHHHHHHHHHHHHH
Confidence 9999 5999999999999999976644322 11 3567778999999886654
No 42
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.78 E-value=5.6e-19 Score=148.45 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHcCCCc-EEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE
Q 022757 153 YYKVQYGTLCIRENPGC-LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 231 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~ 231 (292)
|+.+.+.++.|+. +|+ ..|+||...... ...+...+...+++.+. ..+. .+|++..|..++++++++|++|
T Consensus 144 ~pg~~e~L~~L~~-~gi~laIvSn~~~~~~-~~~L~~~gl~~~F~~vi---~~~~---~~~k~~~~~~~l~~~~~~p~~~ 215 (273)
T PRK13225 144 FPGVADLLAQLRS-RSLCLGILSSNSRQNI-EAFLQRQGLRSLFSVVQ---AGTP---ILSKRRALSQLVAREGWQPAAV 215 (273)
T ss_pred CCCHHHHHHHHHH-CCCeEEEEeCCCHHHH-HHHHHHcCChhheEEEE---ecCC---CCCCHHHHHHHHHHhCcChhHE
Confidence 4456677777775 454 567788776432 11222233333443321 2222 2456789999999999999999
Q ss_pred EEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHh
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 290 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~ 290 (292)
++|||+ .+|+++|+++|+++|+|.+|....+.+.. ..|||+++++.+|.+++++
T Consensus 216 l~IGDs-~~Di~aA~~AG~~~I~v~~g~~~~~~l~~----~~ad~~i~~~~eL~~~~~~ 269 (273)
T PRK13225 216 MYVGDE-TRDVEAARQVGLIAVAVTWGFNDRQSLVA----ACPDWLLETPSDLLQAVTQ 269 (273)
T ss_pred EEECCC-HHHHHHHHHCCCeEEEEecCCCCHHHHHH----CCCCEEECCHHHHHHHHHH
Confidence 999999 59999999999999999999887665543 4799999999999987754
No 43
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.78 E-value=8e-18 Score=142.50 Aligned_cols=256 Identities=14% Similarity=0.089 Sum_probs=127.1
Q ss_pred hceeEEEeeeeeeeCCccC-CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHh
Q 022757 9 LRLSFLTVMVIIWKGDKLI-DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKS 87 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i-~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~ 87 (292)
+|+|+||+||||++.++.+ |...++|++|+++|++++++|| |+...+.+.++++|++. .+++.+++...-..
T Consensus 3 ~kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaTG---R~~~~~~~~~~~l~~~~---~~I~~NGa~i~d~~- 75 (272)
T PRK10530 3 YRVIALDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTG---RHHVAIHPFYQALALDT---PAICCNGTYLYDYQ- 75 (272)
T ss_pred ccEEEEeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEcC---CChHHHHHHHHhcCCCC---CEEEcCCcEEEecC-
Confidence 7999999999999887765 5588999999999999999999 88888888888888752 23333332111000
Q ss_pred cCCCCCCeEEE--EcChh---HHHHHHHcCCeecCCCCCCCCccccCCCCccCCCCCccEEEEeccCCcCHHHHHHHHHH
Q 022757 88 IDFPKDKKVYV--VGEDG---ILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLC 162 (292)
Q Consensus 88 ~~~~~~~~~~~--~g~~~---~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 162 (292)
.++.++- +..+. +.+.++..++.......+.. .+.....+......-.... .......+..+......
T Consensus 76 ----~~~~l~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 148 (272)
T PRK10530 76 ----AKKVLEADPLPVQQALQVIEMLDEHQIHGLMYVDDAM-LYEHPTGHVIRTLNWAQTL--PPEQRPTFTQVDSLAQA 148 (272)
T ss_pred ----CCEEEEecCCCHHHHHHHHHHHHhCCcEEEEEcCCce-EecCchHHHHHHhhhhhcc--chhcccceEEcccHHHH
Confidence 0011110 11111 22223333332110000000 0000000000000000000 00000000001111122
Q ss_pred HHcCCCcEEEEecCCccc-ccCCCCcc-cCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchh
Q 022757 163 IRENPGCLFIATNRDAVT-HLTDAQEW-AGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDT 240 (292)
Q Consensus 163 l~~~~~~~~i~tn~d~~~-~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~ 240 (292)
++.......++++..... .......+ ...+ +..........+....|..++.+++.+++++|++++++++|||+ .|
T Consensus 149 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~i~~GD~-~N 226 (272)
T PRK10530 149 ARQVNAIWKFALTHEDLPQLQHFAKHVEHELG-LECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNVVAFGDN-FN 226 (272)
T ss_pred HhhcCCcEEEEEecCCHHHHHHHHHHHhhhcC-ceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHeEEeCCC-hh
Confidence 221112222333322100 00000000 0000 00000000123445556778899999999999999999999999 69
Q ss_pred hHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhh--HHHhHH
Q 022757 241 DILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISD--FLSLKA 289 (292)
Q Consensus 241 Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~--l~~~~~ 289 (292)
|++|++.+| +.|.+|++. +.++ ..+|+++++..+ +.+.|.
T Consensus 227 Di~m~~~ag---~~vamgna~-~~lk-----~~Ad~v~~~n~~dGv~~~l~ 268 (272)
T PRK10530 227 DISMLEAAG---LGVAMGNAD-DAVK-----ARADLVIGDNTTPSIAEFIY 268 (272)
T ss_pred hHHHHHhcC---ceEEecCch-HHHH-----HhCCEEEecCCCCcHHHHHH
Confidence 999999999 477888775 4444 368999987554 444443
No 44
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.75 E-value=2.8e-17 Score=123.75 Aligned_cols=47 Identities=28% Similarity=0.314 Sum_probs=43.7
Q ss_pred cCCcHHHHHHHHHHc-CCCCCcEEEECCCchhhHHHHHhcCCeEEEEe
Q 022757 210 GKPSTFMMDYLANKF-GIQKSQICMVGDRLDTDILFGQNGGCKTLLVL 256 (292)
Q Consensus 210 gKP~~~~~~~~~~~l-gi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~ 256 (292)
.||+|.+|..+++++ +++|++++||||+..+|+.+|+++|+++|+|.
T Consensus 84 ~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 84 RKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred CCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 899999999999999 59999999999932699999999999999985
No 45
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.74 E-value=1.3e-17 Score=134.27 Aligned_cols=103 Identities=22% Similarity=0.200 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHcCCC-cEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 154 YKVQYGTLCIRENPG-CLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 154 ~~~~~~~~~l~~~~~-~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
+.+.+.++.++. +| +..+.||-|.... ..+...+...+|+.+..++..+. -||+|.+|+.+++++++.|++|+
T Consensus 116 ~~~~~~lq~lR~-~g~~l~iisN~d~r~~--~~l~~~~l~~~fD~vv~S~e~g~---~KPDp~If~~al~~l~v~Pee~v 189 (237)
T KOG3085|consen 116 DGMQELLQKLRK-KGTILGIISNFDDRLR--LLLLPLGLSAYFDFVVESCEVGL---EKPDPRIFQLALERLGVKPEECV 189 (237)
T ss_pred cHHHHHHHHHHh-CCeEEEEecCCcHHHH--HHhhccCHHHhhhhhhhhhhhcc---CCCChHHHHHHHHHhCCChHHeE
Confidence 345577777775 56 4567788888664 33344566678888888887777 99999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeEEEEecCCCCh
Q 022757 233 MVGDRLDTDILFGQNGGCKTLLVLSGVTSL 262 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~ 262 (292)
+|||++.||+++|+++||.+++|-......
T Consensus 190 hIgD~l~nD~~gA~~~G~~ailv~~~~~~~ 219 (237)
T KOG3085|consen 190 HIGDLLENDYEGARNLGWHAILVDNSITAL 219 (237)
T ss_pred EecCccccccHhHHHcCCEEEEEccccchh
Confidence 999999999999999999999998655443
No 46
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.73 E-value=5e-19 Score=149.73 Aligned_cols=69 Identities=23% Similarity=0.266 Sum_probs=58.0
Q ss_pred CceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhh
Q 022757 205 EPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISD 283 (292)
Q Consensus 205 ~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~ 283 (292)
+....|-.+..+++++++++|++++++++|||+ .||++|.+.+| +.|++|++.++- + ..++|++.+..+
T Consensus 189 eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~-~NDi~Ml~~ag---~~vAm~NA~~~v-K-----~~A~~vt~~n~~ 257 (270)
T PRK10513 189 EILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQ-ENDIAMIEYAG---VGVAMGNAIPSV-K-----EVAQFVTKSNLE 257 (270)
T ss_pred EEeCCCCChHHHHHHHHHHhCCCHHHEEEECCc-hhhHHHHHhCC---ceEEecCccHHH-H-----HhcCeeccCCCc
Confidence 455568888999999999999999999999999 69999999999 688888887555 3 268999977543
No 47
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.73 E-value=1.7e-17 Score=134.45 Aligned_cols=97 Identities=22% Similarity=0.158 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
++.+.+.+..++...-...|+||.+... ...+...+...+++.+..+.... .+||+|.+|..+++++|++|++|+
T Consensus 107 ~~g~~~~l~~L~~~g~~~~i~Sn~~~~~--~~~l~~~~l~~~fd~i~~s~~~~---~~KP~~~~~~~~~~~~~~~~~~~~ 181 (203)
T TIGR02252 107 YPDAIKLLKDLRERGLILGVISNFDSRL--RGLLEALGLLEYFDFVVTSYEVG---AEKPDPKIFQEALERAGISPEEAL 181 (203)
T ss_pred CcCHHHHHHHHHHCCCEEEEEeCCchhH--HHHHHHCCcHHhcceEEeecccC---CCCCCHHHHHHHHHHcCCChhHEE
Confidence 4557778888875333468889976532 11222234444555554444433 489999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeEEE
Q 022757 233 MVGDRLDTDILFGQNGGCKTLL 254 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~i~ 254 (292)
+|||++.+||++|+++|+++||
T Consensus 182 ~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 182 HIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred EECCCchHHHHHHHHcCCeeeC
Confidence 9999965899999999999986
No 48
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.73 E-value=3.3e-18 Score=136.88 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=67.3
Q ss_pred HHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEECCC
Q 022757 158 YGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDR 237 (292)
Q Consensus 158 ~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~ 237 (292)
+.+..+++ +....++||...... ...+...+...+++.+..+.... .+||+|++|..+++++|++|++|++|||+
T Consensus 94 e~L~~L~~-~~~l~I~T~~~~~~~-~~~l~~~~l~~~fd~i~~~~~~~---~~KP~p~~~~~~~~~~~~~~~~~l~igDs 168 (188)
T PRK10725 94 EVVKAWHG-RRPMAVGTGSESAIA-EALLAHLGLRRYFDAVVAADDVQ---HHKPAPDTFLRCAQLMGVQPTQCVVFEDA 168 (188)
T ss_pred HHHHHHHh-CCCEEEEcCCchHHH-HHHHHhCCcHhHceEEEehhhcc---CCCCChHHHHHHHHHcCCCHHHeEEEecc
Confidence 34455553 234677888765332 12223344455566555444433 48999999999999999999999999999
Q ss_pred chhhHHHHHhcCCeEEEEe
Q 022757 238 LDTDILFGQNGGCKTLLVL 256 (292)
Q Consensus 238 l~~Di~~a~~aG~~~i~V~ 256 (292)
.+|+++|+++|+++|+|.
T Consensus 169 -~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 169 -DFGIQAARAAGMDAVDVR 186 (188)
T ss_pred -HhhHHHHHHCCCEEEeec
Confidence 699999999999999984
No 49
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.73 E-value=1.1e-17 Score=151.43 Aligned_cols=125 Identities=18% Similarity=0.149 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE
Q 022757 152 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 231 (292)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~ 231 (292)
.|+...+.+..++...-...|+||....... ..+...+...+|+.+...... .+||+|..|..++++++ |++|
T Consensus 331 l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~-~~l~~~~l~~~f~~i~~~d~v----~~~~kP~~~~~al~~l~--~~~~ 403 (459)
T PRK06698 331 LYPNVKEIFTYIKENNCSIYIASNGLTEYLR-AIVSYYDLDQWVTETFSIEQI----NSLNKSDLVKSILNKYD--IKEA 403 (459)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCchHHHH-HHHHHCCcHhhcceeEecCCC----CCCCCcHHHHHHHHhcC--cceE
Confidence 3455777788887643346788888764421 222233444455554333222 14788899999998875 6899
Q ss_pred EEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHh
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 290 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~ 290 (292)
++|||+ .+|+++|+++|+.+|+|.+|....+.+ ..||++++++.++.+++..
T Consensus 404 v~VGDs-~~Di~aAk~AG~~~I~v~~~~~~~~~~------~~~d~~i~~l~el~~~l~~ 455 (459)
T PRK06698 404 AVVGDR-LSDINAAKDNGLIAIGCNFDFAQEDEL------AQADIVIDDLLELKGILST 455 (459)
T ss_pred EEEeCC-HHHHHHHHHCCCeEEEEeCCCCccccc------CCCCEEeCCHHHHHHHHHH
Confidence 999999 599999999999999999987654432 3699999999999887653
No 50
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.73 E-value=5.4e-17 Score=134.05 Aligned_cols=218 Identities=13% Similarity=0.077 Sum_probs=121.3
Q ss_pred hceeEEEeeeeeeeCCccC-CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHh
Q 022757 9 LRLSFLTVMVIIWKGDKLI-DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKS 87 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i-~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~ 87 (292)
+|+|+||+||||++.++.+ +.+.++|++|+++|++++++|| |+...+.+.++.+|++. .+++.+++..... .
T Consensus 3 ~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTG---R~~~~~~~~~~~l~~~~---~~i~~nGa~i~~~-~ 75 (230)
T PRK01158 3 IKAIAIDIDGTITDKDRRLSLKAVEAIRKAEKLGIPVILATG---NVLCFARAAAKLIGTSG---PVIAENGGVISVG-F 75 (230)
T ss_pred eeEEEEecCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcC---CchHHHHHHHHHhCCCC---cEEEecCeEEEEc-C
Confidence 7999999999999988766 4578999999999999999999 88888888888888752 2333332211000 0
Q ss_pred cCCCCCCeEEEEcChhH---HHHHHHcCCeecCCCCCCCCccccCCCCccCCCCCccEEEEeccCCcCHHHHHHHHHHHH
Q 022757 88 IDFPKDKKVYVVGEDGI---LKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIR 164 (292)
Q Consensus 88 ~~~~~~~~~~~~g~~~~---~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~ 164 (292)
.+..++...-+.. .+.+....... . ..+... ........+.. ....... .....+.
T Consensus 76 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~-----~~~~~~~~~~~--~~~~~~~---~~~~~l~ 134 (230)
T PRK01158 76 ----DGKRIFLGDIEECEKAYSELKKRFPEA-S------TSLTKL-----DPDYRKTEVAL--RRTVPVE---EVRELLE 134 (230)
T ss_pred ----CCCEEEEcchHHHHHHHHHHHHhcccc-c------eeeecC-----Ccccccceeee--cccccHH---HHHHHHH
Confidence 0111111111111 12221111000 0 000000 00000000111 0111111 1112222
Q ss_pred cCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHH
Q 022757 165 ENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILF 244 (292)
Q Consensus 165 ~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~ 244 (292)
.. +..+..+.. ....+....+.+++.++.++++++|++++++++|||+ .||++|
T Consensus 135 ~~-~~~~~~~~~------------------------~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~-~NDi~m 188 (230)
T PRK01158 135 EL-GLDLEIVDS------------------------GFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDS-ENDLEM 188 (230)
T ss_pred Hc-CCcEEEEec------------------------ceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCc-hhhHHH
Confidence 11 110100000 0012334447888999999999999999999999999 699999
Q ss_pred HHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhh--HHHhHH
Q 022757 245 GQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISD--FLSLKA 289 (292)
Q Consensus 245 a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~--l~~~~~ 289 (292)
++.+| +.|..|++.++- + ..++|++.+..+ +.+.|.
T Consensus 189 ~~~ag---~~vam~Na~~~v-k-----~~a~~v~~~n~~~Gv~~~l~ 226 (230)
T PRK01158 189 FEVAG---FGVAVANADEEL-K-----EAADYVTEKSYGEGVAEAIE 226 (230)
T ss_pred HHhcC---ceEEecCccHHH-H-----HhcceEecCCCcChHHHHHH
Confidence 99999 556778776544 3 257999887543 444443
No 51
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.73 E-value=6.1e-17 Score=136.48 Aligned_cols=67 Identities=24% Similarity=0.300 Sum_probs=56.8
Q ss_pred hhceeEEEeeeeeeeCCccCCC-HHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHH
Q 022757 8 LLRLSFLTVMVIIWKGDKLIDG-VPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFA 80 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~~~i~~-a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~ 80 (292)
++|+|+||+||||++.++.++. +.++|++++++|++++++|| |+...+.+.++.+|++. .+++.+++
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTG---R~~~~~~~~~~~l~~~~---~~I~~NGa 69 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATG---RPLPDVLSILEELGLDG---PLITFNGA 69 (264)
T ss_pred CeeEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECC---CChHHHHHHHHHcCCCc---cEEEeCCe
Confidence 3799999999999999887755 78999999999999999999 88888899999999863 34444443
No 52
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.73 E-value=1.3e-17 Score=136.88 Aligned_cols=124 Identities=10% Similarity=0.037 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
|+.+.+.+..+++..-...++||....... ..+...+...+|+.+..+... ..+||+|.+|..+++++|++|++|+
T Consensus 95 ~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~-~~l~~~~l~~~fd~iv~s~~~---~~~KP~p~~~~~~~~~~~~~p~~~l 170 (224)
T PRK14988 95 REDTVPFLEALKASGKRRILLTNAHPHNLA-VKLEHTGLDAHLDLLLSTHTF---GYPKEDQRLWQAVAEHTGLKAERTL 170 (224)
T ss_pred CCCHHHHHHHHHhCCCeEEEEeCcCHHHHH-HHHHHCCcHHHCCEEEEeeeC---CCCCCCHHHHHHHHHHcCCChHHEE
Confidence 445677778887632246888887653321 112223444444444333333 3489999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeE-EEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHH
Q 022757 233 MVGDRLDTDILFGQNGGCKT-LLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 289 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~-i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~ 289 (292)
+|||+ .+|+++|+++||++ ++|.+|.+..+. .+....+++.++.+++.
T Consensus 171 ~igDs-~~di~aA~~aG~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 219 (224)
T PRK14988 171 FIDDS-EPILDAAAQFGIRYCLGVTNPDSGIAE--------KQYQRHPSLNDYRRLIP 219 (224)
T ss_pred EEcCC-HHHHHHHHHcCCeEEEEEeCCCCCccc--------hhccCCCcHHHHHHHhh
Confidence 99999 59999999999985 678887665332 23333455555554443
No 53
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.73 E-value=1.5e-16 Score=121.93 Aligned_cols=48 Identities=27% Similarity=0.457 Sum_probs=46.0
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecC
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSG 258 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G 258 (292)
.||+|.+|+.+++++|+++++|++|||+ ..|+++|+++|+++|||..|
T Consensus 100 ~KP~~~~~~~~~~~~~~~~~e~i~IGDs-~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 100 RKPKPGLILEALKRLGVDASRSLVVGDR-LRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred CCCCHHHHHHHHHHcCCChHHEEEEcCC-HHHHHHHHHCCCCEEEecCC
Confidence 7999999999999999999999999999 79999999999999999765
No 54
>PRK10976 putative hydrolase; Provisional
Probab=99.72 E-value=5.6e-16 Score=130.79 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=51.2
Q ss_pred hceeEEEeeeeeeeCCccCC-CHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 9 LRLSFLTVMVIIWKGDKLID-GVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i~-~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+|+|++|+||||++.++.++ .+.++|++|+++|++++++|| |+...+.+.++.+|++
T Consensus 2 ikli~~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~~iaTG---R~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 2 YQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFATG---RHHVDVGQIRDNLEIK 59 (266)
T ss_pred ceEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcC---CChHHHHHHHHhcCCC
Confidence 79999999999999877674 478999999999999999999 8888888888888876
No 55
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.70 E-value=1.3e-15 Score=128.77 Aligned_cols=234 Identities=13% Similarity=0.055 Sum_probs=129.3
Q ss_pred hhhhceeEEEeeeeeeeCCccC-CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHH
Q 022757 6 LTLLRLSFLTVMVIIWKGDKLI-DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAY 84 (292)
Q Consensus 6 ~~~~k~i~fDiDGtL~~~~~~i-~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~ 84 (292)
+..+++|++|+||||++.++.+ +.+.++|++|+++|++++++|| |+...+.+.++++|++. ..+++.+++..-.
T Consensus 4 ~~~~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTG---R~~~~i~~~~~~l~~~~--~~~I~~NGa~I~~ 78 (271)
T PRK03669 4 LQDPLLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSS---KTAAEMLPLQQTLGLQG--LPLIAENGAVIQL 78 (271)
T ss_pred cCCCeEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcC---CCHHHHHHHHHHhCCCC--CcEEEeCCCEEEe
Confidence 4568999999999999987766 4478999999999999999999 99999988999999842 1244444432210
Q ss_pred HHhcCCCCCCeEE--EEcChhHHHHHH---Hc-CCeecCCCCCCCCccccCCCCccCCCCCccEEEEeccCCcCHHHH--
Q 022757 85 LKSIDFPKDKKVY--VVGEDGILKELE---LA-GFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKV-- 156 (292)
Q Consensus 85 l~~~~~~~~~~~~--~~g~~~~~~~l~---~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-- 156 (292)
...........++ .+..+.+.+.+. .. ++.+ ..........+...
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~ 131 (271)
T PRK03669 79 DEQWQDHPDFPRIISGISHGEIRQVLNTLREKEGFKF---------------------------TTFDDVDDATIAEWTG 131 (271)
T ss_pred cCcccCCCCceEeecCCCHHHHHHHHHHHHHhcCCce---------------------------eecccCCHHHHHHHhC
Confidence 0000000000011 122333333222 11 2111 00000000000000
Q ss_pred -HHHHHHHHcCCC--cEEEEecCCcccccCCCCcccCcchHHHHHH--------hccCCCceeecCCcHHHHHHHHHHcC
Q 022757 157 -QYGTLCIRENPG--CLFIATNRDAVTHLTDAQEWAGGGSMVGAFV--------GSTQREPLVVGKPSTFMMDYLANKFG 225 (292)
Q Consensus 157 -~~~~~~l~~~~~--~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~--------~~~~~~~~~~gKP~~~~~~~~~~~lg 225 (292)
......+..... ..++........ ..+...+. .....+.+..|-.|..+.+.+++++|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~iEi~~~g~sKg~al~~l~~~lg 200 (271)
T PRK03669 132 LSRSQAALARLHEASVTLIWRDSDERM-----------AQFTARLAELGLQFVQGARFWHVLDASAGKDQAANWLIATYQ 200 (271)
T ss_pred CCHHHHHHHhccccCceeEecCCHHHH-----------HHHHHHHHHCCCEEEecCeeEEEecCCCCHHHHHHHHHHHHH
Confidence 000000010000 111111110000 00111111 01123556668889999999999999
Q ss_pred C---CCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChh--hccCCCCCCCCcEEeCCHh--hHHHhH
Q 022757 226 I---QKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLS--MLQSPNNSIQPDFYTNKIS--DFLSLK 288 (292)
Q Consensus 226 i---~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~--~~~~~~~~~~pd~~~~~l~--~l~~~~ 288 (292)
+ +++++++|||+ .||++|.+.+| +.|++|+...+ .+. .....|+|+.+... .+.+.+
T Consensus 201 i~~~~~~~viafGDs-~NDi~Ml~~ag---~gvAM~~~~~~~~~l~--~~~~~~~~~~~~~~~~g~~~~l 264 (271)
T PRK03669 201 QLSGTRPTTLGLGDG-PNDAPLLDVMD---YAVVVKGLNREGVHLQ--DDDPARVYRTQREGPEGWREGL 264 (271)
T ss_pred hhcCCCceEEEEcCC-HHHHHHHHhCC---EEEEecCCCCCCcccc--cccCCceEeccCCCcHHHHHHH
Confidence 9 99999999999 69999999999 77888866533 232 12247889988876 344433
No 56
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.70 E-value=3.7e-16 Score=120.95 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=49.8
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhh
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSM 264 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~ 264 (292)
.||++.+|..+++++++++++|+||||+ .+|+++|+++|+++++|.+|.-..+.
T Consensus 102 ~KP~~~~~~~~~~~~~~~~~e~l~IGD~-~~Di~~A~~aGi~~i~~~~~~~~~~~ 155 (161)
T TIGR01261 102 RKPKIKLLEPYLKKNLIDKARSYVIGDR-ETDMQLAENLGIRGIQYDEEELNWDM 155 (161)
T ss_pred CCCCHHHHHHHHHHcCCCHHHeEEEeCC-HHHHHHHHHCCCeEEEEChhhcCHHH
Confidence 7999999999999999999999999999 69999999999999999988655443
No 57
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.70 E-value=5.8e-17 Score=137.20 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=51.7
Q ss_pred hceeEEEeeeeeeeCCccCC-CHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 9 LRLSFLTVMVIIWKGDKLID-GVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i~-~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+|+|+||+||||++.++.++ .+.++|++|+++|++++++|| |+...+.+.++++|++
T Consensus 2 ~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTG---R~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATG---RHVLEMQHILGALSLD 59 (272)
T ss_pred ccEEEEeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEECC---CCHHHHHHHHHHcCCC
Confidence 79999999999999887674 478999999999999999999 9999988888999885
No 58
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.70 E-value=1.8e-17 Score=133.66 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCCCc-EEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE
Q 022757 153 YYKVQYGTLCIRENPGC-LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 231 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~ 231 (292)
++.+.+.+..++. +|. .+++||.+.... .......+...+++.+..+.... .+||+|.+|..+++++|++|++|
T Consensus 94 ~~~~~~~L~~L~~-~g~~~~i~Sn~~~~~~-~~~l~~~gl~~~fd~i~~s~~~~---~~KP~~~~~~~~~~~~~~~p~~~ 168 (198)
T TIGR01428 94 HPDVPAGLRALKE-RGYRLAILSNGSPAML-KSLVKHAGLDDPFDAVLSADAVR---AYKPAPQVYQLALEALGVPPDEV 168 (198)
T ss_pred CCCHHHHHHHHHH-CCCeEEEEeCCCHHHH-HHHHHHCCChhhhheeEehhhcC---CCCCCHHHHHHHHHHhCCChhhE
Confidence 4456777788875 444 577898876432 11222334445566555444443 48999999999999999999999
Q ss_pred EEECCCchhhHHHHHhcCCeEEEEecC
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLVLSG 258 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V~~G 258 (292)
++|||+. +|+++|+++||.+|||..+
T Consensus 169 ~~vgD~~-~Di~~A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 169 LFVASNP-WDLGGAKKFGFKTAWVNRP 194 (198)
T ss_pred EEEeCCH-HHHHHHHHCCCcEEEecCC
Confidence 9999995 9999999999999999764
No 59
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.69 E-value=3.7e-16 Score=122.54 Aligned_cols=56 Identities=30% Similarity=0.408 Sum_probs=51.8
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhc
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSML 265 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~ 265 (292)
.||+|.+|..+++++|+++++++||||++.+|+++|+++|+.+|+|.+|.+..+.+
T Consensus 90 ~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~~~~ 145 (170)
T TIGR01668 90 VKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILVEPLVHPDQWF 145 (170)
T ss_pred CCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEEccCcCCcccc
Confidence 79999999999999999999999999996579999999999999999998776554
No 60
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.69 E-value=5.6e-17 Score=158.66 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHcCCCc-EEEEecCCcccccCCCCcccCcc-hHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCc
Q 022757 153 YYKVQYGTLCIRENPGC-LFIATNRDAVTHLTDAQEWAGGG-SMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 230 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~ 230 (292)
|+.+.+.++.|++ +|+ ..|+||....... ..+...+.. .+|+.+..+ +....+||+|++|..+++++|++|++
T Consensus 163 ~pG~~elL~~Lk~-~G~~l~IvSn~~~~~~~-~~L~~~gl~~~~Fd~iv~~---~~~~~~KP~Pe~~~~a~~~lgv~p~e 237 (1057)
T PLN02919 163 FPGALELITQCKN-KGLKVAVASSADRIKVD-ANLAAAGLPLSMFDAIVSA---DAFENLKPAPDIFLAAAKILGVPTSE 237 (1057)
T ss_pred CccHHHHHHHHHh-CCCeEEEEeCCcHHHHH-HHHHHcCCChhHCCEEEEC---cccccCCCCHHHHHHHHHHcCcCccc
Confidence 4567777788876 454 5778888764321 111222332 344444333 33344899999999999999999999
Q ss_pred EEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhH
Q 022757 231 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDF 284 (292)
Q Consensus 231 ~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l 284 (292)
|++|||+ .+|+++|+++||++|+|.+|.. .+++.. ..|+++++++.++
T Consensus 238 ~v~IgDs-~~Di~AA~~aGm~~I~v~~~~~-~~~L~~----~~a~~vi~~l~el 285 (1057)
T PLN02919 238 CVVIEDA-LAGVQAARAAGMRCIAVTTTLS-EEILKD----AGPSLIRKDIGNI 285 (1057)
T ss_pred EEEEcCC-HHHHHHHHHcCCEEEEECCCCC-HHHHhh----CCCCEEECChHHC
Confidence 9999999 5999999999999999999864 455443 5899999999986
No 61
>PLN02887 hydrolase family protein
Probab=99.68 E-value=2.1e-15 Score=137.88 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=61.6
Q ss_pred CCceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhh
Q 022757 204 REPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISD 283 (292)
Q Consensus 204 ~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~ 283 (292)
.+.+..|-.|..++..+++++|++++++++|||+ .||++|.+.+| ..|++|++..+-.+ .+|+++.+..+
T Consensus 499 lEI~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs-~NDIeMLe~AG---~gVAMgNA~eeVK~------~Ad~VT~sNdE 568 (580)
T PLN02887 499 LEIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDG-ENDIEMLQLAS---LGVALSNGAEKTKA------VADVIGVSNDE 568 (580)
T ss_pred EEEecCCCCHHHHHHHHHHHcCCCHHHEEEEecc-hhhHHHHHHCC---CEEEeCCCCHHHHH------hCCEEeCCCCc
Confidence 3455667888999999999999999999999999 69999999999 78889998765532 68999977654
Q ss_pred --HHHhHH
Q 022757 284 --FLSLKA 289 (292)
Q Consensus 284 --l~~~~~ 289 (292)
+.+.|.
T Consensus 569 DGVA~aLe 576 (580)
T PLN02887 569 DGVADAIY 576 (580)
T ss_pred CHHHHHHH
Confidence 444443
No 62
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.68 E-value=3.6e-16 Score=116.82 Aligned_cols=47 Identities=32% Similarity=0.465 Sum_probs=46.2
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEe
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVL 256 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~ 256 (292)
+||.+..|+.|++.+++++++|+||||++.|||.+++++||.||+|.
T Consensus 92 ~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~ 138 (175)
T COG2179 92 KKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVE 138 (175)
T ss_pred cCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEE
Confidence 89999999999999999999999999999999999999999999995
No 63
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.68 E-value=4.3e-16 Score=125.73 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
++.+.+.++.++...-..+++||..............+...+++.+..+..... +||+|.+|..+++++|++|++|+
T Consensus 86 ~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~---~KP~p~~~~~~~~~~~~~p~~~l 162 (199)
T PRK09456 86 RPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGM---RKPEARIYQHVLQAEGFSAADAV 162 (199)
T ss_pred CHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCC---CCCCHHHHHHHHHHcCCChhHeE
Confidence 566788888887633346788888653211000011233344444444444444 89999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeEEEEecCCCChhhcc
Q 022757 233 MVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQ 266 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~ 266 (292)
+|||+ ..|+++|+++|++++++..+....+.++
T Consensus 163 ~vgD~-~~di~aA~~aG~~~i~~~~~~~~~~~l~ 195 (199)
T PRK09456 163 FFDDN-ADNIEAANALGITSILVTDKQTIPDYFA 195 (199)
T ss_pred EeCCC-HHHHHHHHHcCCEEEEecCCccHHHHHH
Confidence 99999 5999999999999999988766655543
No 64
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.67 E-value=1.1e-16 Score=131.67 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=56.5
Q ss_pred CceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhh
Q 022757 205 EPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISD 283 (292)
Q Consensus 205 ~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~ 283 (292)
+....+.+++.++.++++++|++++++++|||+ .||+.|++.+| +.|.+|++.++- + ..+|+++.+..+
T Consensus 142 ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~-~NDi~m~~~ag---~~vam~Na~~~~-k-----~~A~~vt~~~~~ 210 (225)
T TIGR01482 142 HILPQGVNKGVAVKKLKEKLGIKPGETLVCGDS-ENDIDLFEVPG---FGVAVANAQPEL-K-----EWADYVTESPYG 210 (225)
T ss_pred EEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCC-HhhHHHHHhcC---ceEEcCChhHHH-H-----HhcCeecCCCCC
Confidence 344557888899999999999999999999999 69999999999 677888877544 3 268888876543
No 65
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.67 E-value=1.9e-17 Score=132.10 Aligned_cols=97 Identities=16% Similarity=0.092 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
++.+.+.++.+++..-...++||..... ..+...+...+++.+..+.. ....||+|.+|..+++++++++++|+
T Consensus 89 ~pg~~~~L~~L~~~g~~~~i~s~~~~~~---~~l~~~~l~~~f~~~~~~~~---~~~~kp~p~~~~~~~~~~~~~~~~~v 162 (185)
T TIGR01990 89 LPGIKNLLDDLKKNNIKIALASASKNAP---TVLEKLGLIDYFDAIVDPAE---IKKGKPDPEIFLAAAEGLGVSPSECI 162 (185)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCccHH---HHHHhcCcHhhCcEEEehhh---cCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 4456677777775322346667653311 11222333334444333333 33489999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeEEEEe
Q 022757 233 MVGDRLDTDILFGQNGGCKTLLVL 256 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~i~V~ 256 (292)
+|||+ .+|+++|+++||++|+|.
T Consensus 163 ~vgD~-~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 163 GIEDA-QAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred EEecC-HHHHHHHHHcCCEEEecC
Confidence 99999 699999999999999873
No 66
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.66 E-value=1.3e-15 Score=124.35 Aligned_cols=205 Identities=15% Similarity=0.146 Sum_probs=113.5
Q ss_pred hceeEEEeeeeeeeCCccC-CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHh
Q 022757 9 LRLSFLTVMVIIWKGDKLI-DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKS 87 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i-~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~ 87 (292)
+|+|+||+||||++.++.+ +.+.++|++|+++|++++++|| |++..+.+.++.++++. .+++.+++......
T Consensus 1 ik~v~~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~~~~TG---R~~~~~~~~~~~l~~~~---~~i~~NGa~i~~~~- 73 (215)
T TIGR01487 1 IKLVAIDIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVTG---NTVPFARALAVLIGTSG---PVVAENGGVIFYNK- 73 (215)
T ss_pred CcEEEEecCCCcCCCCcccCHHHHHHHHHHHHCCCEEEEEcC---CcchhHHHHHHHhCCCC---cEEEccCcEEEeCC-
Confidence 5899999999999887766 5688999999999999999999 88888777777788752 23322221111000
Q ss_pred cCCCCCCeEEEEc-ChhHHHHHHHcCCeecCCCCCCCCccccCCCCccCCCCCccEEEEeccCCcCHHHHHHHHHHHHcC
Q 022757 88 IDFPKDKKVYVVG-EDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIREN 166 (292)
Q Consensus 88 ~~~~~~~~~~~~g-~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~ 166 (292)
..+.... ............... . ... . ..... ............ ......++.
T Consensus 74 ------~~~~~~~~~~~~~~~~~~~~~~~-~------~~~------~-~~~~~--~~~~~~~~~~~~---~~~~~~l~~- 127 (215)
T TIGR01487 74 ------EDIFLANMEEEWFLDEEKKKRFP-R------DRL------S-NEYPR--ASLVIMREGKDV---DEVREIIKE- 127 (215)
T ss_pred ------CcEEEecccchhhHHHhhhhhhh-h------hhc------c-cccce--eEEEEecCCccH---HHHHHHHHh-
Confidence 0011100 000000000000000 0 000 0 00000 000000111111 111122221
Q ss_pred CCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHH
Q 022757 167 PGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQ 246 (292)
Q Consensus 167 ~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~ 246 (292)
.+...+.+ . ...+....+..+..+++++++++|++++++++|||+ .||++|++
T Consensus 128 ~~~~~~~~-~-------------------------~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs-~ND~~ml~ 180 (215)
T TIGR01487 128 RGLNLVDS-G-------------------------FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDS-ENDIDLFR 180 (215)
T ss_pred CCeEEEec-C-------------------------ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCC-HHHHHHHH
Confidence 12221110 0 011223336677789999999999999999999999 69999999
Q ss_pred hcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHh
Q 022757 247 NGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKIS 282 (292)
Q Consensus 247 ~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~ 282 (292)
.+| +.|.++++.++- + ..++|++++..
T Consensus 181 ~ag---~~vam~na~~~~-k-----~~A~~v~~~~~ 207 (215)
T TIGR01487 181 VVG---FKVAVANADDQL-K-----EIADYVTSNPY 207 (215)
T ss_pred hCC---CeEEcCCccHHH-H-----HhCCEEcCCCC
Confidence 999 667788876544 3 25789887643
No 67
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.66 E-value=4.9e-17 Score=129.70 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHcCCCcE-EEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE
Q 022757 153 YYKVQYGTLCIRENPGCL-FIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 231 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~-~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~ 231 (292)
++.+.+.+..+++ .|.. .++||... . ...+...+...+++.+.. .+.....||+|.+|..+++++|++++++
T Consensus 90 ~~g~~~~l~~l~~-~g~~i~i~S~~~~-~--~~~l~~~~l~~~f~~v~~---~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 162 (185)
T TIGR02009 90 LPGIENFLKRLKK-KGIAVGLGSSSKN-A--DRILAKLGLTDYFDAIVD---ADEVKEGKPHPETFLLAAELLGVSPNEC 162 (185)
T ss_pred CcCHHHHHHHHHH-cCCeEEEEeCchh-H--HHHHHHcChHHHCCEeee---hhhCCCCCCChHHHHHHHHHcCCCHHHe
Confidence 4456677777775 3554 56676621 1 111122333334443333 2333348999999999999999999999
Q ss_pred EEECCCchhhHHHHHhcCCeEEEE
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLV 255 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V 255 (292)
++|||+ .+|+++|+++|+++|+|
T Consensus 163 v~IgD~-~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 163 VVFEDA-LAGVQAARAAGMFAVAV 185 (185)
T ss_pred EEEeCc-HhhHHHHHHCCCeEeeC
Confidence 999999 69999999999999976
No 68
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.66 E-value=1.4e-15 Score=118.40 Aligned_cols=45 Identities=36% Similarity=0.524 Sum_probs=41.6
Q ss_pred cCCcHHHHHHHHHHcC--CCCCcEEEECCCc-------hhhHHHHHhcCCeEEE
Q 022757 210 GKPSTFMMDYLANKFG--IQKSQICMVGDRL-------DTDILFGQNGGCKTLL 254 (292)
Q Consensus 210 gKP~~~~~~~~~~~lg--i~~~~~~~iGD~l-------~~Di~~a~~aG~~~i~ 254 (292)
.||+|.+|..+++++| +++++++||||+. .+|+++|+++|+++++
T Consensus 107 ~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 107 RKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred CCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 7999999999999999 9999999999983 3699999999999875
No 69
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.65 E-value=3.7e-16 Score=127.31 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHcCCCc-EEEEecCCcccccC-CCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCC
Q 022757 152 NYYKVQYGTLCIRENPGC-LFIATNRDAVTHLT-DAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKS 229 (292)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~-~~i~tn~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~ 229 (292)
.|+.+.+.++.|++ +|+ .+++||........ ......+...+++.+..+... ...||+|.+|..+++++|++|+
T Consensus 95 ~~~~~~~~L~~L~~-~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~---~~~KP~p~~~~~~~~~~g~~~~ 170 (211)
T TIGR02247 95 LRPSMMAAIKTLRA-KGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLE---GLRKPDPRIYQLMLERLGVAPE 170 (211)
T ss_pred cChhHHHHHHHHHH-CCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeec---CCCCCCHHHHHHHHHHcCCCHH
Confidence 46677888888886 455 57778875422100 111111223344443333223 3389999999999999999999
Q ss_pred cEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhc
Q 022757 230 QICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSML 265 (292)
Q Consensus 230 ~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~ 265 (292)
+|++|||+ ..|+.+|+++|+++|+|.++....+.+
T Consensus 171 ~~l~i~D~-~~di~aA~~aG~~~i~v~~~~~~~~~l 205 (211)
T TIGR02247 171 ECVFLDDL-GSNLKPAAALGITTIKVSDEEQAIHDL 205 (211)
T ss_pred HeEEEcCC-HHHHHHHHHcCCEEEEECCHHHHHHHH
Confidence 99999999 699999999999999998765444433
No 70
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.64 E-value=4.3e-16 Score=125.55 Aligned_cols=118 Identities=10% Similarity=0.056 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHH-HHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGA-FVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 231 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~ 231 (292)
|+.+.+.+..|++. +..+++||....... ......+...++.. +....+.+. .||+|.+|..+++++| ++++
T Consensus 76 ~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~-~~~~~~~l~~~f~~~f~~i~~~~~---~~~kp~~~~~a~~~~~--~~~~ 148 (197)
T PHA02597 76 YDDALDVINKLKED-YDFVAVTALGDSIDA-LLNRQFNLNALFPGAFSEVLMCGH---DESKEKLFIKAKEKYG--DRVV 148 (197)
T ss_pred CCCHHHHHHHHHhc-CCEEEEeCCccchhH-HHHhhCCHHHhCCCcccEEEEecc---CcccHHHHHHHHHHhC--CCcE
Confidence 45567777777753 556777776542211 01111122222211 111222223 5888999999999999 8899
Q ss_pred EEECCCchhhHHHHHhc--CCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHH
Q 022757 232 CMVGDRLDTDILFGQNG--GCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLS 286 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~a--G~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~ 286 (292)
++|||+ .+|+++|+++ |+++|+|.+|.. +. ...|+|.+.|+.|+..
T Consensus 149 v~vgDs-~~di~aA~~a~~Gi~~i~~~~~~~--~~------~~~~~~~~~~~~~~~~ 196 (197)
T PHA02597 149 CFVDDL-AHNLDAAHEALSQLPVIHMLRGER--DH------IPKLAHRVKSWNDIEN 196 (197)
T ss_pred EEeCCC-HHHHHHHHHHHcCCcEEEecchhh--cc------ccchhhhhccHHHHhc
Confidence 999999 5999999999 999999999853 11 2367899999999864
No 71
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.63 E-value=1.4e-14 Score=112.17 Aligned_cols=74 Identities=28% Similarity=0.411 Sum_probs=64.0
Q ss_pred ecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhH
Q 022757 209 VGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 288 (292)
Q Consensus 209 ~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~ 288 (292)
+.||++.++..+++++++++++.++|||++ +|+++|.++|++++.+.+|......-. .+.+++++++.++..++
T Consensus 103 cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~-~Dlq~a~n~gi~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 176 (181)
T COG0241 103 CRKPKPGMLLSALKEYNIDLSRSYVVGDRL-TDLQAAENAGIKGVLVLTGIGVTTDGA-----GRAKWVFDSLAEFANLI 176 (181)
T ss_pred ccCCChHHHHHHHHHhCCCccceEEecCcH-HHHHHHHHCCCCceEEEcCcccccccc-----cccccccccHHHHHHHH
Confidence 399999999999999999999999999995 999999999999999999987654322 26789999998887443
No 72
>PLN02811 hydrolase
Probab=99.63 E-value=4.2e-16 Score=127.73 Aligned_cols=123 Identities=14% Similarity=0.109 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCC--ceeecCCcHHHHHHHHHHcC---CC
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQRE--PLVVGKPSTFMMDYLANKFG---IQ 227 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~gKP~~~~~~~~~~~lg---i~ 227 (292)
|+.+.+.++.+++..-...|+||........ .......+...+......+ ....+||+|.+|..++++++ ++
T Consensus 80 ~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~---~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 80 MPGAERLVRHLHAKGIPIAIATGSHKRHFDL---KTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CccHHHHHHHHHHCCCcEEEEeCCchhhHHH---HHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence 4556777777776433457778776432110 0111111222222222233 33458999999999999996 99
Q ss_pred CCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHH
Q 022757 228 KSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFL 285 (292)
Q Consensus 228 ~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~ 285 (292)
|++|++|||+ ..|+++|+++|+++|+|.+|....... ..||++++++.++.
T Consensus 157 ~~~~v~IgDs-~~di~aA~~aG~~~i~v~~~~~~~~~~------~~~d~vi~~~~e~~ 207 (220)
T PLN02811 157 PGKVLVFEDA-PSGVEAAKNAGMSVVMVPDPRLDKSYC------KGADQVLSSLLDFK 207 (220)
T ss_pred ccceEEEecc-HhhHHHHHHCCCeEEEEeCCCCcHhhh------hchhhHhcCHhhCC
Confidence 9999999999 599999999999999999887654332 26999999998753
No 73
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.63 E-value=5.4e-15 Score=111.50 Aligned_cols=49 Identities=27% Similarity=0.417 Sum_probs=44.8
Q ss_pred ceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEE
Q 022757 206 PLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLV 255 (292)
Q Consensus 206 ~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V 255 (292)
....+||++..+..+++.++.+++++++|||+ .+|+++++++|+.+++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~-~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 91 PFDIGKPNPDKLLAALKLLGVDPEEVLMVGDS-LNDIEMAKAAGGLGVAV 139 (139)
T ss_pred ccccCCCCHHHHHHHHHHcCCChhhEEEeCCC-HHHHHHHHHcCCceeeC
Confidence 44459999999999999999999999999999 59999999999999875
No 74
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.61 E-value=4.8e-14 Score=118.31 Aligned_cols=55 Identities=29% Similarity=0.446 Sum_probs=48.9
Q ss_pred eeEEEeeeeeeeCCccC-CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 11 LSFLTVMVIIWKGDKLI-DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 11 ~i~fDiDGtL~~~~~~i-~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+|+||+||||++.++.+ +.+.++|++|+++|++++++|| |+...+.+.++++|++
T Consensus 1 li~~DlDGTLl~~~~~i~~~~~~~i~~l~~~G~~~~iaTG---R~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHTISPSTKEALAKLREKGIKVVLATG---RPYKEVKNILKELGLD 56 (256)
T ss_pred CEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHcCCC
Confidence 48999999999987766 5588999999999999999999 8888888888888876
No 75
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.61 E-value=4.9e-15 Score=117.59 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeC------CHhhH
Q 022757 211 KPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTN------KISDF 284 (292)
Q Consensus 211 KP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~------~l~~l 284 (292)
++++..+..+++++|+++++++||||+ .+|+.+++++|+.. .|. .. .+... ..|+|+++ .+.++
T Consensus 95 ~~k~~~l~~~~~~~gl~~~ev~~VGDs-~~D~~~a~~aG~~~-~v~--~~-~~~~~-----~~a~~v~~~~~g~g~~~el 164 (183)
T PRK09484 95 SNKLIAFSDLLEKLAIAPEQVAYIGDD-LIDWPVMEKVGLSV-AVA--DA-HPLLL-----PRADYVTRIAGGRGAVREV 164 (183)
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEECCC-HHHHHHHHHCCCeE-ecC--Ch-hHHHH-----HhCCEEecCCCCCCHHHHH
Confidence 445677888999999999999999999 59999999999884 353 21 12222 46899997 67888
Q ss_pred HHhHH
Q 022757 285 LSLKA 289 (292)
Q Consensus 285 ~~~~~ 289 (292)
.++|.
T Consensus 165 ~~~i~ 169 (183)
T PRK09484 165 CDLLL 169 (183)
T ss_pred HHHHH
Confidence 87664
No 76
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.61 E-value=2.7e-15 Score=119.54 Aligned_cols=99 Identities=20% Similarity=0.194 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCc-eeecCCcHHHHHHHHHHcCCCCCc
Q 022757 152 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREP-LVVGKPSTFMMDYLANKFGIQKSQ 230 (292)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~gKP~~~~~~~~~~~lgi~~~~ 230 (292)
.++.+.+.+..++ ...+++||...... ...+...+...+|+.+..+..... ....||+|.+|..+++++|++|++
T Consensus 85 ~~~g~~~~L~~L~---~~~~i~Tn~~~~~~-~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 160 (184)
T TIGR01993 85 PDPELRNLLLRLP---GRKIIFTNGDRAHA-RRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPER 160 (184)
T ss_pred CCHHHHHHHHhCC---CCEEEEeCCCHHHH-HHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccc
Confidence 3455666666664 45678898876432 122223344445554444333222 112599999999999999999999
Q ss_pred EEEECCCchhhHHHHHhcCCeEEEE
Q 022757 231 ICMVGDRLDTDILFGQNGGCKTLLV 255 (292)
Q Consensus 231 ~~~iGD~l~~Di~~a~~aG~~~i~V 255 (292)
|++|||+ ..|+++|+++|+++|+|
T Consensus 161 ~l~vgD~-~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 161 AIFFDDS-ARNIAAAKALGMKTVLV 184 (184)
T ss_pred eEEEeCC-HHHHHHHHHcCCEEeeC
Confidence 9999999 59999999999999986
No 77
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=99.59 E-value=2.5e-14 Score=120.02 Aligned_cols=55 Identities=18% Similarity=0.139 Sum_probs=50.3
Q ss_pred eeEEEeeeeeeeCCc-cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 11 LSFLTVMVIIWKGDK-LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 11 ~i~fDiDGtL~~~~~-~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+|++|+||||+++++ .++.+.+++++|+++|++++++|| |++..+.+.++.+|++
T Consensus 1 li~~DlDGTll~~~~~~~~~~~~~i~~l~~~g~~~~~~Tg---R~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 1 WIFTDLDGTLLDPHGYDWGPAKEVLERLQELGIPVIPCTS---KTAAEVEYLRKELGLE 56 (256)
T ss_pred CEEEcCCCCCcCCCCcCchHHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHcCCC
Confidence 489999999999887 677789999999999999999999 9999999999999985
No 78
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.59 E-value=3.3e-14 Score=120.33 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=51.1
Q ss_pred hceeEEEeeeeeeeCCc-cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 9 LRLSFLTVMVIIWKGDK-LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~-~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+|.|++|+||||+++++ ..+++.++|++|+++|++++++|| |++..+...++.+|++
T Consensus 4 ~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaTg---R~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCTS---KTAAEVEVLRKELGLE 61 (273)
T ss_pred ceEEEEcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCCC
Confidence 89999999999998544 556689999999999999999999 8998888889999985
No 79
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.57 E-value=2.4e-14 Score=110.40 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=50.4
Q ss_pred CCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHh
Q 022757 211 KPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKIS 282 (292)
Q Consensus 211 KP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~ 282 (292)
||++..+..+++++|+++++|++|||+ .+|+.+++.+|+. +.|..+. +.+. ..|++++++..
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~~~~vGDs-~~D~~~~~~ag~~-~~v~~~~---~~~~-----~~a~~i~~~~~ 136 (154)
T TIGR01670 75 SNKLIAFSDILEKLALAPENVAYIGDD-LIDWPVMEKVGLS-VAVADAH---PLLI-----PRADYVTRIAG 136 (154)
T ss_pred cchHHHHHHHHHHcCCCHHHEEEECCC-HHHHHHHHHCCCe-EecCCcC---HHHH-----HhCCEEecCCC
Confidence 577889999999999999999999999 5999999999985 7666543 2222 35899988664
No 80
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.57 E-value=1.2e-14 Score=113.13 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=46.7
Q ss_pred cCCcHHHHHHHHHHc--CCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhh
Q 022757 210 GKPSTFMMDYLANKF--GIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSM 264 (292)
Q Consensus 210 gKP~~~~~~~~~~~l--gi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~ 264 (292)
.||.+.+++.+.+.+ |++|++|++|||+ ..|+++|+++|+.++++.+|....+.
T Consensus 110 ~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs-~~di~aA~~aGi~~i~v~~g~~~~~~ 165 (174)
T TIGR01685 110 AKQLEMILQKVNKVDPSVLKPAQILFFDDR-TDNVREVWGYGVTSCYCPSGMDKGTF 165 (174)
T ss_pred HHHHHHHHHHhhhcccCCCCHHHeEEEcCh-hHhHHHHHHhCCEEEEcCCCccHHHH
Confidence 577778888887777 8999999999999 59999999999999999998755443
No 81
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.56 E-value=5e-14 Score=109.49 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=53.7
Q ss_pred CCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCC------HhhH
Q 022757 211 KPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNK------ISDF 284 (292)
Q Consensus 211 KP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~------l~~l 284 (292)
||+|..+..+++++++++++|++|||+ .||+.|++.+| +-+..+++..+- . ..+++++.+ +.++
T Consensus 81 kpkp~~~~~~~~~l~~~~~ev~~iGD~-~nDi~~~~~ag---~~~am~nA~~~l-k-----~~A~~I~~~~~~~g~v~e~ 150 (169)
T TIGR02726 81 KKKTEPYAQMLEEMNISDAEVCYVGDD-LVDLSMMKRVG---LAVAVGDAVADV-K-----EAAAYVTTARGGHGAVREV 150 (169)
T ss_pred CCCHHHHHHHHHHcCcCHHHEEEECCC-HHHHHHHHHCC---CeEECcCchHHH-H-----HhCCEEcCCCCCCCHHHHH
Confidence 788999999999999999999999999 59999999999 556666665433 3 267888763 3455
Q ss_pred HHhH
Q 022757 285 LSLK 288 (292)
Q Consensus 285 ~~~~ 288 (292)
.+.+
T Consensus 151 ~e~i 154 (169)
T TIGR02726 151 AELI 154 (169)
T ss_pred HHHH
Confidence 5544
No 82
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.56 E-value=1e-13 Score=115.74 Aligned_cols=65 Identities=25% Similarity=0.357 Sum_probs=54.0
Q ss_pred ecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhh
Q 022757 209 VGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISD 283 (292)
Q Consensus 209 ~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~ 283 (292)
.+-.+..+.+.+++.+|++++++++|||+ .||+.|.+.+| ..|..|++.++-.. .+++++++..+
T Consensus 183 ~~vsK~~ai~~l~~~~~i~~~~~~~~GD~-~ND~~Ml~~~~---~~~am~na~~~~k~------~a~~i~~~~~~ 247 (254)
T PF08282_consen 183 KGVSKGSAIKYLLEYLGISPEDIIAFGDS-ENDIEMLELAG---YSVAMGNATPELKK------AADYITPSNND 247 (254)
T ss_dssp TTSSHHHHHHHHHHHHTTSGGGEEEEESS-GGGHHHHHHSS---EEEEETTS-HHHHH------HSSEEESSGTC
T ss_pred CCCCHHHHHHHHhhhcccccceeEEeecc-cccHhHHhhcC---eEEEEcCCCHHHHH------hCCEEecCCCC
Confidence 35556778888999999999999999999 69999999999 77888888755533 68999988776
No 83
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.54 E-value=1.7e-14 Score=114.70 Aligned_cols=96 Identities=21% Similarity=0.174 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcCCCc-EEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE
Q 022757 153 YYKVQYGTLCIRENPGC-LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 231 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~ 231 (292)
++.+.+.++.++. .|. .+++||..... . ......+...+++.+..+.. ...+||+|.+|..+++++|++|++|
T Consensus 87 ~~g~~~~l~~l~~-~g~~~~i~Tn~~~~~-~-~~~~~~~l~~~f~~i~~~~~---~~~~KP~~~~~~~~~~~~~~~~~~~ 160 (183)
T TIGR01509 87 LPGVEPLLEALRA-RGKKLALLTNSPRDH-A-VLVQELGLRDLFDVVIFSGD---VGRGKPDPDIYLLALKKLGLKPEEC 160 (183)
T ss_pred CcCHHHHHHHHHH-CCCeEEEEeCCchHH-H-HHHHhcCCHHHCCEEEEcCC---CCCCCCCHHHHHHHHHHcCCCcceE
Confidence 3446667777765 344 57788887643 1 11111333334444333322 3349999999999999999999999
Q ss_pred EEECCCchhhHHHHHhcCCeEEEE
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLV 255 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V 255 (292)
++|||+ ..|+++|+++|+.+|+|
T Consensus 161 ~~vgD~-~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 161 LFVDDS-PAGIEAAKAAGMHTVLV 183 (183)
T ss_pred EEEcCC-HHHHHHHHHcCCEEEeC
Confidence 999999 59999999999999986
No 84
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.52 E-value=2.8e-13 Score=116.88 Aligned_cols=49 Identities=24% Similarity=0.344 Sum_probs=46.1
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCC
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGV 259 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~ 259 (292)
+||+|.++..+++.+++++++++||||+ .+|+++|+++|+++|+|....
T Consensus 103 rKP~p~~l~~a~~~l~v~~~~svmIGDs-~sDi~aAk~aGi~~I~v~~~~ 151 (354)
T PRK05446 103 RKPKTGLVEEYLAEGAIDLANSYVIGDR-ETDVQLAENMGIKGIRYARET 151 (354)
T ss_pred CCCCHHHHHHHHHHcCCCcccEEEEcCC-HHHHHHHHHCCCeEEEEECCC
Confidence 8999999999999999999999999999 699999999999999996543
No 85
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.52 E-value=1.1e-13 Score=113.49 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=52.7
Q ss_pred eeEEEeeeeeeeCCc-cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHH
Q 022757 11 LSFLTVMVIIWKGDK-LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFA 80 (292)
Q Consensus 11 ~i~fDiDGtL~~~~~-~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~ 80 (292)
+|++|+||||+++++ .++.+.++|++|+++|++++++|| |++..+...++.+|++. ..+++.+++
T Consensus 1 ~i~~DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~Tg---R~~~~~~~~~~~l~~~~--~~~I~~NGa 66 (221)
T TIGR02463 1 WVFSDLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCTS---KTAAEVEYLQKALGLTG--DPYIAENGA 66 (221)
T ss_pred CEEEeCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHcCCCC--CcEEEeCCc
Confidence 489999999998876 445588999999999999999999 99998888888898751 235555444
No 86
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.51 E-value=4e-13 Score=111.30 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=109.0
Q ss_pred eeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCC
Q 022757 11 LSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDF 90 (292)
Q Consensus 11 ~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~ 90 (292)
+|++|+||||++.++.++...++++ ++++|++++++|| |+...+.+.+..+++. .++.+++.+++...+... .
T Consensus 1 li~~DlDgTLl~~~~~~~~~~~~~~-~~~~gi~~viaTG---R~~~~v~~~~~~l~l~-~~~~~I~~nGa~i~~~~~--~ 73 (236)
T TIGR02471 1 LIITDLDNTLLGDDEGLASFVELLR-GSGDAVGFGIATG---RSVESAKSRYAKLNLP-SPDVLIARVGTEIYYGPE--L 73 (236)
T ss_pred CeEEeccccccCCHHHHHHHHHHHH-hcCCCceEEEEeC---CCHHHHHHHHHhCCCC-CCCEEEECCCceEEeCCC--C
Confidence 4799999999998777766566776 6999999999999 9999999999999885 223344444432211000 0
Q ss_pred CCCCeEE------EEcChhHHHHHHHc-CCeecCCCCCCCCccccCCCCccCCCCCccEEEEeccCCcCHHHHHHHHHHH
Q 022757 91 PKDKKVY------VVGEDGILKELELA-GFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCI 163 (292)
Q Consensus 91 ~~~~~~~------~~g~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 163 (292)
... ..+ ......+.+.+... ++.... ......-.+........ ...+......+
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~i~~~~~~~~-~~~~~~~~~~l 134 (236)
T TIGR02471 74 QPD-RFWQKHIDHDWRRQAVVEALADIPGLTLQD-----------------DQEQGPFKISYLLDPEG-EPILPQIRQRL 134 (236)
T ss_pred CCC-hhHHHHHhcCCCHHHHHHHHhcCCCcEeCC-----------------hhcCCCeeEEEEECccc-chHHHHHHHHH
Confidence 000 000 00001111111111 111000 00001111111111110 01122222333
Q ss_pred HcCC-CcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhH
Q 022757 164 RENP-GCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDI 242 (292)
Q Consensus 164 ~~~~-~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di 242 (292)
+... ...++.++. ...+....+++|+.+++++++++|++++++++|||+ .||+
T Consensus 135 ~~~~~~~~~~~~~~-------------------------~~~ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~-~nD~ 188 (236)
T TIGR02471 135 RQQSQAAKVILSCG-------------------------WFLDVLPLRASKGLALRYLSYRWGLPLEQILVAGDS-GNDE 188 (236)
T ss_pred HhccCCEEEEEECC-------------------------ceEEEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCC-ccHH
Confidence 3210 011111110 012344558899999999999999999999999999 6999
Q ss_pred HHHHhcCCeEEEEecCCCChhh
Q 022757 243 LFGQNGGCKTLLVLSGVTSLSM 264 (292)
Q Consensus 243 ~~a~~aG~~~i~V~~G~~~~~~ 264 (292)
.|++.+| ..|..|+..++-
T Consensus 189 ~ml~~~~---~~iav~na~~~~ 207 (236)
T TIGR02471 189 EMLRGLT---LGVVVGNHDPEL 207 (236)
T ss_pred HHHcCCC---cEEEEcCCcHHH
Confidence 9999998 555667766554
No 87
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.51 E-value=2.3e-13 Score=116.85 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=46.1
Q ss_pred cCCcHHHHHHHHHHcCC-CCCcEEEECCCchhhHHHHHhcCCeEEEEecCC
Q 022757 210 GKPSTFMMDYLANKFGI-QKSQICMVGDRLDTDILFGQNGGCKTLLVLSGV 259 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi-~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~ 259 (292)
+||+|.++..++++++. ++++|+||||+ .+|+++|+++|+.+++|.+|.
T Consensus 250 ~kp~p~~~~~~l~~~~~~~~~~~~~vgD~-~~d~~~a~~~Gi~~i~v~~g~ 299 (300)
T PHA02530 250 KRPDDVVKEEIFWEKIAPKYDVLLAVDDR-DQVVDMWRRIGLECWQVAPGD 299 (300)
T ss_pred CCCcHHHHHHHHHHHhccCceEEEEEcCc-HHHHHHHHHhCCeEEEecCCC
Confidence 79999999999999998 67999999999 699999999999999998874
No 88
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.49 E-value=1.7e-13 Score=110.20 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=58.0
Q ss_pred ceeecCCcHHHHHHHHHHcCCCC-CcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhH
Q 022757 206 PLVVGKPSTFMMDYLANKFGIQK-SQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDF 284 (292)
Q Consensus 206 ~~~~gKP~~~~~~~~~~~lgi~~-~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l 284 (292)
.+..|||+|++|..+++++|.+| +.|++|.|+ ..-+++|++|||.+|+|.+..-.. .....++.+++++.+.
T Consensus 146 ~v~~gKP~Pdi~l~A~~~l~~~~~~k~lVfeds-~~Gv~aa~aagm~vi~v~~~~~~~------~~~~~~~~~~~~~~~~ 218 (222)
T KOG2914|consen 146 EVKNGKPDPDIYLKAAKRLGVPPPSKCLVFEDS-PVGVQAAKAAGMQVVGVATPDLSN------LFSAGATLILESLEDF 218 (222)
T ss_pred cccCCCCCchHHHHHHHhcCCCCccceEEECCC-HHHHHHHHhcCCeEEEecCCCcch------hhhhccceeccccccc
Confidence 34558999999999999999998 999999999 599999999999999998822111 1224677777776653
No 89
>PLN02954 phosphoserine phosphatase
Probab=99.47 E-value=4.2e-13 Score=110.32 Aligned_cols=70 Identities=17% Similarity=0.337 Sum_probs=54.8
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCC-ChhhccCCCCCCCCcEEeCCHhhHHHhH
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVT-SLSMLQSPNNSIQPDFYTNKISDFLSLK 288 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~-~~~~~~~~~~~~~pd~~~~~l~~l~~~~ 288 (292)
++|+|.++..+++++|. +++++|||+ .+|+.+|+++|+..+.. +|.+ ..+... ..||++++++.+|.+++
T Consensus 153 ~~~K~~~i~~~~~~~~~--~~~i~iGDs-~~Di~aa~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~i~~~~el~~~~ 223 (224)
T PLN02954 153 SGGKAEAVQHIKKKHGY--KTMVMIGDG-ATDLEARKPGGADLFIG-YGGVQVREAVA-----AKADWFVTDFQDLIEVL 223 (224)
T ss_pred CccHHHHHHHHHHHcCC--CceEEEeCC-HHHHHhhhcCCCCEEEe-cCCCccCHHHH-----hcCCEEECCHHHHHHhh
Confidence 67888999999998885 689999999 59999999988876654 4433 222222 46999999999998765
No 90
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=99.46 E-value=3.2e-13 Score=110.66 Aligned_cols=55 Identities=24% Similarity=0.261 Sum_probs=50.0
Q ss_pred eeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 11 LSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 11 ~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+|+||+||||++.+..++++.++|++|+++|++++++|| |++..+.+.++++|++
T Consensus 1 li~~DlDGTLl~~~~~~~~~~~ai~~l~~~G~~~vi~Tg---R~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 1 VIFTDLDGTLLPPGYEPGPAREALEELKDLGFPIVFVSS---KTRAEQEYYREELGVE 55 (225)
T ss_pred CEEEeCCCCCcCCCCCchHHHHHHHHHHHCCCEEEEEeC---CCHHHHHHHHHHcCCC
Confidence 489999999999767777799999999999999999999 9999999999999974
No 91
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.44 E-value=3.7e-13 Score=110.26 Aligned_cols=68 Identities=24% Similarity=0.273 Sum_probs=53.4
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeC--CHhhHHHh
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTN--KISDFLSL 287 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~--~l~~l~~~ 287 (292)
++|++.+|+.+++++++++++|++|||+ .+|+.+|+++|+..++ .| .+.+. ..+++++. ++.++..+
T Consensus 150 ~~~k~~~~~~~~~~~~~~~~~~i~iGDs-~~Di~aa~~ag~~i~~--~~---~~~~~-----~~a~~~i~~~~~~~~~~~ 218 (219)
T TIGR00338 150 ASYKGKTLLILLRKEGISPENTVAVGDG-ANDLSMIKAAGLGIAF--NA---KPKLQ-----QKADICINKKDLTDILPL 218 (219)
T ss_pred CcccHHHHHHHHHHcCCCHHHEEEEECC-HHHHHHHHhCCCeEEe--CC---CHHHH-----HhchhccCCCCHHHHHhh
Confidence 5789999999999999999999999999 5999999999987432 12 22232 26899966 66777665
Q ss_pred H
Q 022757 288 K 288 (292)
Q Consensus 288 ~ 288 (292)
+
T Consensus 219 ~ 219 (219)
T TIGR00338 219 L 219 (219)
T ss_pred C
Confidence 3
No 92
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.43 E-value=5.3e-13 Score=107.50 Aligned_cols=85 Identities=18% Similarity=0.139 Sum_probs=58.7
Q ss_pred HHHHHHHHcCCCc-EEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEEC
Q 022757 157 QYGTLCIRENPGC-LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVG 235 (292)
Q Consensus 157 ~~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iG 235 (292)
.+.+..++. .|+ ..|+||...... ...+...+...+++.+.. .+.... ||+|.+|..+++++|+++++|++||
T Consensus 112 ~~~L~~l~~-~g~~~~i~T~~~~~~~-~~~l~~~gl~~~f~~~~~---~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~vG 185 (197)
T TIGR01548 112 KGLLRELHR-APKGMAVVTGRPRKDA-AKFLTTHGLEILFPVQIW---MEDCPP-KPNPEPLILAAKALGVEACHAAMVG 185 (197)
T ss_pred HHHHHHHHH-cCCcEEEECCCCHHHH-HHHHHHcCchhhCCEEEe---ecCCCC-CcCHHHHHHHHHHhCcCcccEEEEe
Confidence 455666765 454 578898876432 122233344444443322 222223 9999999999999999999999999
Q ss_pred CCchhhHHHHHhc
Q 022757 236 DRLDTDILFGQNG 248 (292)
Q Consensus 236 D~l~~Di~~a~~a 248 (292)
|+ .+|+++|+++
T Consensus 186 D~-~~Di~aA~~a 197 (197)
T TIGR01548 186 DT-VDDIITGRKA 197 (197)
T ss_pred CC-HHHHHHHHhC
Confidence 99 5999999875
No 93
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.42 E-value=1.2e-12 Score=109.34 Aligned_cols=65 Identities=18% Similarity=0.125 Sum_probs=51.5
Q ss_pred eeEEEeeeeeee---CCccC-CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHH
Q 022757 11 LSFLTVMVIIWK---GDKLI-DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF 79 (292)
Q Consensus 11 ~i~fDiDGtL~~---~~~~i-~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~ 79 (292)
+|+.|+||||++ +++.. |...+.+++++++|++++++|+ |+..++.+.+..+++.. ++.+++.++
T Consensus 3 li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aTG---R~~~~~~~~~~~~~~~~-p~~~I~~NG 71 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYSTG---RSPHSYKELQKQKPLLT-PDIWVTSVG 71 (249)
T ss_pred EEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEcC---CCHHHHHHHHhcCCCCC-CCEEEEcCC
Confidence 689999999996 55544 6678999999999999999999 99999988888888753 233444433
No 94
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=99.41 E-value=1.5e-11 Score=103.34 Aligned_cols=69 Identities=16% Similarity=0.039 Sum_probs=53.5
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhc-CCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhH
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNG-GCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 288 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~a-G~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~ 288 (292)
|--|..+++++++++|++.+++++|||+ .||+.|.+.+ .+....|..|+.. ..+.|.+++..++..++
T Consensus 172 g~~Kg~al~~ll~~~~~~~~~v~~~GD~-~nD~~mf~~~~~~~g~~vavg~a~----------~~A~~~l~~~~~v~~~L 240 (266)
T PRK10187 172 GTNKGEAIAAFMQEAPFAGRTPVFVGDD-LTDEAGFAVVNRLGGISVKVGTGA----------TQASWRLAGVPDVWSWL 240 (266)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEEEcCC-ccHHHHHHHHHhcCCeEEEECCCC----------CcCeEeCCCHHHHHHHH
Confidence 5567888899999999999999999999 5999999988 1112445556543 24789999999887665
Q ss_pred H
Q 022757 289 A 289 (292)
Q Consensus 289 ~ 289 (292)
.
T Consensus 241 ~ 241 (266)
T PRK10187 241 E 241 (266)
T ss_pred H
Confidence 4
No 95
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.41 E-value=1.3e-13 Score=108.94 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=55.2
Q ss_pred EEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhc
Q 022757 170 LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNG 248 (292)
Q Consensus 170 ~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~a 248 (292)
..|+||....... ......+...+++.+..+.... .+||+|.+|..+++++|++|++|+||||+ ..|+.+|+++
T Consensus 102 ~~i~Tn~~~~~~~-~~l~~~~l~~~fd~v~~~~~~~---~~KP~p~~f~~~~~~~~~~p~~~l~vgD~-~~Di~~A~~~ 175 (175)
T TIGR01493 102 VAILSNASHWAFD-QFAQQAGLPWYFDRAFSVDTVR---AYKPDPVVYELVFDTVGLPPDRVLMVAAH-QWDLIGARKF 175 (175)
T ss_pred HhhhhCCCHHHHH-HHHHHCCCHHHHhhhccHhhcC---CCCCCHHHHHHHHHHHCCCHHHeEeEecC-hhhHHHHhcC
Confidence 3577888764421 2223345566677665444333 48999999999999999999999999999 6999999874
No 96
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.40 E-value=1.5e-12 Score=105.79 Aligned_cols=100 Identities=12% Similarity=0.029 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHcCCCc-EEEEecCCcccccCCCCcc---cCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCC
Q 022757 152 NYYKVQYGTLCIRENPGC-LFIATNRDAVTHLTDAQEW---AGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQ 227 (292)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~ 227 (292)
.|+++.+.++.++. +|+ .+|+||....... ..... .+...++..+. . .....||+|..|..+++++|++
T Consensus 96 lypgv~e~L~~Lk~-~G~~l~I~Sn~s~~~~~-~~~~~~~~~~L~~~f~~~f---d--~~~g~KP~p~~y~~i~~~lgv~ 168 (220)
T TIGR01691 96 LYPDVPPALEAWLQ-LGLRLAVYSSGSVPAQK-LLFGHSDAGNLTPYFSGYF---D--TTVGLKTEAQSYVKIAGQLGSP 168 (220)
T ss_pred cCcCHHHHHHHHHH-CCCEEEEEeCCCHHHHH-HHHhhccccchhhhcceEE---E--eCcccCCCHHHHHHHHHHhCcC
Confidence 46667888888875 455 5778888753211 00000 11112222211 1 1223799999999999999999
Q ss_pred CCcEEEECCCchhhHHHHHhcCCeEEEEecCC
Q 022757 228 KSQICMVGDRLDTDILFGQNGGCKTLLVLSGV 259 (292)
Q Consensus 228 ~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~ 259 (292)
|++|++|||+ ..|+++|+++||++++|.++.
T Consensus 169 p~e~lfVgDs-~~Di~AA~~AG~~ti~v~r~g 199 (220)
T TIGR01691 169 PREILFLSDI-INELDAARKAGLHTGQLVRPG 199 (220)
T ss_pred hhHEEEEeCC-HHHHHHHHHcCCEEEEEECCC
Confidence 9999999999 699999999999999997654
No 97
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.38 E-value=6e-12 Score=96.74 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=38.1
Q ss_pred hhceeEEEeeeeee--eCCccCCCHHHHHHHHHHCCCc--EEEEeCCCCCC
Q 022757 8 LLRLSFLTVMVIIW--KGDKLIDGVPETLDMLRSKGKR--LVFVTNNSTKS 54 (292)
Q Consensus 8 ~~k~i~fDiDGtL~--~~~~~i~~a~eal~~L~~~G~~--~~~~Tn~s~r~ 54 (292)
.+|+++||.|.||. +.....|...+.++++++.+.. ++++|||++..
T Consensus 40 Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~ 90 (168)
T PF09419_consen 40 GIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSS 90 (168)
T ss_pred CceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 58999999999995 4555667788999999988764 99999976443
No 98
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.36 E-value=5.6e-12 Score=94.04 Aligned_cols=41 Identities=20% Similarity=0.477 Sum_probs=36.5
Q ss_pred ceeEEEeeeeeeeCCc-------------cCCCHHHHHHHHHHCCCcEEEEeCC
Q 022757 10 RLSFLTVMVIIWKGDK-------------LIDGVPETLDMLRSKGKRLVFVTNN 50 (292)
Q Consensus 10 k~i~fDiDGtL~~~~~-------------~i~~a~eal~~L~~~G~~~~~~Tn~ 50 (292)
|+++||+|||||++.. ++||+.+.|+.|+++|++++++||+
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~ 54 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYN 54 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCC
Confidence 6899999999998831 4789999999999999999999993
No 99
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.35 E-value=2e-11 Score=99.95 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=37.6
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChh
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLS 263 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~ 263 (292)
.||++. .+++++++ ++||||+ .+||.+|+++|+++|.|.+|.+...
T Consensus 173 ~Kp~~~---~~l~~~~i----~i~vGDs-~~DI~aAk~AGi~~I~V~~g~~s~~ 218 (237)
T TIGR01672 173 YQYTKT---QWIQDKNI----RIHYGDS-DNDITAAKEAGARGIRILRASNSTY 218 (237)
T ss_pred CCCCHH---HHHHhCCC----eEEEeCC-HHHHHHHHHCCCCEEEEEecCCCCC
Confidence 566654 34566776 7999999 5999999999999999999987654
No 100
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=99.33 E-value=3.6e-11 Score=97.38 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=41.9
Q ss_pred CceeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeE
Q 022757 205 EPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKT 252 (292)
Q Consensus 205 ~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~ 252 (292)
+..+.|.+++.+++.++++++++++++++|||+ .||+.|++.+|+..
T Consensus 156 ev~p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~-~nD~~~~~~~~~~v 202 (204)
T TIGR01484 156 EVLPAGVDKGSALQALLKELNGKRDEILAFGDS-GNDEEMFEVAGLAV 202 (204)
T ss_pred EEecCCCChHHHHHHHHHHhCCCHHHEEEEcCC-HHHHHHHHHcCCce
Confidence 445568999999999999999999999999999 69999999999653
No 101
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.33 E-value=1.1e-12 Score=101.31 Aligned_cols=86 Identities=17% Similarity=0.066 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEEEC
Q 022757 156 VQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVG 235 (292)
Q Consensus 156 ~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~iG 235 (292)
+.+.+..++......+++||....... ...... ...++. .....+... +||+|.+|..+++++|+++ +|++||
T Consensus 69 ~~e~l~~L~~~g~~~~i~T~~~~~~~~-~~~~~~-l~~~f~---~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l~iG 141 (154)
T TIGR01549 69 AADLLKRLKEAGIKLGIISNGSLRAQK-LLLRKH-LGDYFD---LILGSDEFG-AKPEPEIFLAALESLGLPP-EVLHVG 141 (154)
T ss_pred HHHHHHHHHHCcCeEEEEeCCchHHHH-HHHHHH-HHhcCc---EEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEEEEe
Confidence 556667776532235777887754321 110110 122222 222233334 8999999999999999999 999999
Q ss_pred CCchhhHHHHHhcC
Q 022757 236 DRLDTDILFGQNGG 249 (292)
Q Consensus 236 D~l~~Di~~a~~aG 249 (292)
|+ ..|+++|+++|
T Consensus 142 Ds-~~Di~aa~~aG 154 (154)
T TIGR01549 142 DN-LNDIEGARNAG 154 (154)
T ss_pred CC-HHHHHHHHHcc
Confidence 99 69999999987
No 102
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.29 E-value=1.2e-11 Score=106.27 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=55.2
Q ss_pred ecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeC--CHhhHHH
Q 022757 209 VGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTN--KISDFLS 286 (292)
Q Consensus 209 ~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~--~l~~l~~ 286 (292)
.+||++..+..+++++|+++++|++|||+ .||+.|++.||+..++ +.. +.+. ..+|++++ +++.++-
T Consensus 245 ~~k~K~~~L~~la~~lgi~~~qtIaVGDg-~NDl~m~~~AGlgiA~----nAk-p~Vk-----~~Ad~~i~~~~l~~~l~ 313 (322)
T PRK11133 245 DAQYKADTLTRLAQEYEIPLAQTVAIGDG-ANDLPMIKAAGLGIAY----HAK-PKVN-----EQAQVTIRHADLMGVLC 313 (322)
T ss_pred CcccHHHHHHHHHHHcCCChhhEEEEECC-HHHHHHHHHCCCeEEe----CCC-HHHH-----hhCCEEecCcCHHHHHH
Confidence 37999999999999999999999999999 5999999999965554 333 3333 37899887 4556655
Q ss_pred hHH
Q 022757 287 LKA 289 (292)
Q Consensus 287 ~~~ 289 (292)
++.
T Consensus 314 ~~~ 316 (322)
T PRK11133 314 ILS 316 (322)
T ss_pred Hhc
Confidence 554
No 103
>PTZ00174 phosphomannomutase; Provisional
Probab=99.27 E-value=5.6e-11 Score=99.07 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=46.7
Q ss_pred hceeEEEeeeeeeeCCccC-CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHc
Q 022757 9 LRLSFLTVMVIIWKGDKLI-DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFET 64 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i-~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~ 64 (292)
+|+|+||+||||+++++.+ |...++|++++++|++++++|| |+...+.+.+..
T Consensus 5 ~klia~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTG---R~~~~i~~~l~~ 58 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGG---SDYPKIKEQLGE 58 (247)
T ss_pred CeEEEEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHhh
Confidence 6999999999999998877 4478999999999999999999 888887777653
No 104
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.26 E-value=1.3e-10 Score=95.08 Aligned_cols=38 Identities=26% Similarity=0.380 Sum_probs=32.6
Q ss_pred HHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCCh
Q 022757 220 LANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSL 262 (292)
Q Consensus 220 ~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~ 262 (292)
.++.+++ +++|||+ .+|+++|++||+++|.|.+|.+..
T Consensus 180 ~l~~~~i----~I~IGDs-~~Di~aA~~AGi~~I~v~~G~~~~ 217 (237)
T PRK11009 180 WLKKKNI----RIFYGDS-DNDITAAREAGARGIRILRAANST 217 (237)
T ss_pred HHHhcCC----eEEEcCC-HHHHHHHHHcCCcEEEEecCCCCC
Confidence 4456665 8999999 599999999999999999997753
No 105
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.24 E-value=1.1e-10 Score=97.02 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=50.8
Q ss_pred hceeEEEeeeeeeeCCccC-CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 9 LRLSFLTVMVIIWKGDKLI-DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i-~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+|+||+|+||||++.+..+ +.+.++|++|+++|++++++|+ |+..++...++++|++
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaTG---Rt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYSL---RTRAQLEHLCRQLRLE 58 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHhCCC
Confidence 3899999999999976644 5588999999999999999999 9999999988999986
No 106
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.21 E-value=2e-11 Score=95.46 Aligned_cols=88 Identities=22% Similarity=0.160 Sum_probs=72.1
Q ss_pred EEEEecCCcccccCCCCcccCcchHHHHHHhccCCC---ceeecCCcHHHHHHHHHHcCCC-CCcEEEECCCchhhHHHH
Q 022757 170 LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQRE---PLVVGKPSTFMMDYLANKFGIQ-KSQICMVGDRLDTDILFG 245 (292)
Q Consensus 170 ~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~gKP~~~~~~~~~~~lgi~-~~~~~~iGD~l~~Di~~a 245 (292)
+.+.||.++... .+.+...|+...|+.+.+..-.. ...+-||++.+|+.+.+..|++ |.++++|.|| .+.|+.|
T Consensus 117 k~~FTNa~k~HA-~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~~p~~t~FfDDS-~~NI~~a 194 (244)
T KOG3109|consen 117 KWIFTNAYKVHA-IRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGIDSPRNTYFFDDS-ERNIQTA 194 (244)
T ss_pred EEEecCCcHHHH-HHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCCCcCceEEEcCc-hhhHHHH
Confidence 788899998653 45566777777777766544333 4667899999999999999998 9999999999 6999999
Q ss_pred HhcCCeEEEEecCC
Q 022757 246 QNGGCKTLLVLSGV 259 (292)
Q Consensus 246 ~~aG~~~i~V~~G~ 259 (292)
++.||++++|..-.
T Consensus 195 k~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 195 KEVGLKTVLVGREH 208 (244)
T ss_pred HhccceeEEEEeee
Confidence 99999999997543
No 107
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=99.21 E-value=4.4e-10 Score=103.27 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=50.9
Q ss_pred hhceeEEEeeeeeeeCCccC-CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 8 LLRLSFLTVMVIIWKGDKLI-DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~~~i-~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
..|+|++|+||||++.++.+ +.+.++|++|+++|++++++|| |+...+...++.+|++
T Consensus 415 ~~KLIfsDLDGTLLd~d~~i~~~t~eAL~~L~ekGI~~VIATG---Rs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 415 FKKIVYTDLDGTLLNPLTYSYSTALDALRLLKDKELPLVFCSA---KTMGEQDLYRNELGIK 473 (694)
T ss_pred eeeEEEEECcCCCcCCCCccCHHHHHHHHHHHHcCCeEEEEeC---CCHHHHHHHHHHcCCC
Confidence 46999999999999876644 5578999999999999999999 8898888888888874
No 108
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=99.19 E-value=2.7e-09 Score=88.78 Aligned_cols=67 Identities=15% Similarity=-0.021 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhc-------CCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHH
Q 022757 213 STFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNG-------GCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFL 285 (292)
Q Consensus 213 ~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~a-------G~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~ 285 (292)
|..++..++++++++++++++|||+ .||+.|++.+ |..++.|..|.. ...++|++++..++.
T Consensus 168 Kg~a~~~~~~~~~~~~~~~i~iGD~-~~D~~~~~~~~~~~~~~g~~~v~v~~g~~----------~~~A~~~~~~~~~v~ 236 (244)
T TIGR00685 168 KGEIVKRLLWHQPGSGISPVYLGDD-ITDEDAFRVVNNQWGNYGFYPVPIGSGSK----------KTVAKFHLTGPQQVL 236 (244)
T ss_pred HHHHHHHHHHhcccCCCceEEEcCC-CcHHHHHHHHhcccCCCCeEEEEEecCCc----------CCCceEeCCCHHHHH
Confidence 4688889999999999999999999 6999999999 677888874421 136899999999998
Q ss_pred HhHHh
Q 022757 286 SLKAA 290 (292)
Q Consensus 286 ~~~~~ 290 (292)
+++..
T Consensus 237 ~~L~~ 241 (244)
T TIGR00685 237 EFLGL 241 (244)
T ss_pred HHHHH
Confidence 87753
No 109
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.18 E-value=7.3e-12 Score=98.46 Aligned_cols=98 Identities=22% Similarity=0.227 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEE
Q 022757 153 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 232 (292)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~ 232 (292)
++.+.+.+..+++.....+++||.+.... .......+...+++.+..+..... .||++.+|+.+++++|++|++|+
T Consensus 79 ~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~-~~~l~~~~~~~~f~~i~~~~~~~~---~Kp~~~~~~~~~~~~~~~p~~~~ 154 (176)
T PF13419_consen 79 YPGVRELLERLKAKGIPLVIVSNGSRERI-ERVLERLGLDDYFDEIISSDDVGS---RKPDPDAYRRALEKLGIPPEEIL 154 (176)
T ss_dssp STTHHHHHHHHHHTTSEEEEEESSEHHHH-HHHHHHTTHGGGCSEEEEGGGSSS---STTSHHHHHHHHHHHTSSGGGEE
T ss_pred hhhhhhhhhhcccccceeEEeecCCcccc-cccccccccccccccccccchhhh---hhhHHHHHHHHHHHcCCCcceEE
Confidence 34467777888754444567788876432 112222333444444444433334 89999999999999999999999
Q ss_pred EECCCchhhHHHHHhcCCeEEEE
Q 022757 233 MVGDRLDTDILFGQNGGCKTLLV 255 (292)
Q Consensus 233 ~iGD~l~~Di~~a~~aG~~~i~V 255 (292)
+|||+. .|+++|+++|+.+|+|
T Consensus 155 ~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 155 FVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp EEESSH-HHHHHHHHTTSEEEEE
T ss_pred EEeCCH-HHHHHHHHcCCeEEeC
Confidence 999995 9999999999999987
No 110
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.18 E-value=1.2e-10 Score=94.34 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcE-EeCCHhhHHHhHHhh
Q 022757 215 FMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDF-YTNKISDFLSLKAAA 291 (292)
Q Consensus 215 ~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~-~~~~l~~l~~~~~~~ 291 (292)
.....+++.++..+++|+||||+ .+|+.+++++|+.. ++ +. ...... ..|++ +++++.+|.+++..+
T Consensus 131 ~~k~~~l~~~~~~~~~~v~iGDs-~~D~~~~~aa~~~v-~~--~~-~~~~~~-----~~~~~~~~~~~~el~~~l~~~ 198 (205)
T PRK13582 131 DGKRQAVKALKSLGYRVIAAGDS-YNDTTMLGEADAGI-LF--RP-PANVIA-----EFPQFPAVHTYDELLAAIDKA 198 (205)
T ss_pred chHHHHHHHHHHhCCeEEEEeCC-HHHHHHHHhCCCCE-EE--CC-CHHHHH-----hCCcccccCCHHHHHHHHHHH
Confidence 33455666777777999999999 59999999999733 32 22 222211 24665 899999998776653
No 111
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.17 E-value=2.4e-10 Score=103.60 Aligned_cols=40 Identities=33% Similarity=0.345 Sum_probs=36.0
Q ss_pred cCCcHHHHHHHHHHcC----CCCCcEEEECCCchhhHHHHHhcCC
Q 022757 210 GKPSTFMMDYLANKFG----IQKSQICMVGDRLDTDILFGQNGGC 250 (292)
Q Consensus 210 gKP~~~~~~~~~~~lg----i~~~~~~~iGD~l~~Di~~a~~aG~ 250 (292)
.||+|.++.+++++++ +++++++||||+ ..|++.++++|-
T Consensus 262 RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDa-agr~~~g~~ag~ 305 (526)
T TIGR01663 262 RKPLTGMWDHLKEEANDGTEIQEDDCFFVGDA-AGRPANGKAAGK 305 (526)
T ss_pred CCCCHHHHHHHHHhcCcccCCCHHHeEEeCCc-ccchHHHHhcCC
Confidence 8999999999999985 899999999999 688888777774
No 112
>PLN02382 probable sucrose-phosphatase
Probab=99.09 E-value=9.1e-09 Score=91.65 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=43.3
Q ss_pred eecCCcHHHHHHHHHHc---CCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhh
Q 022757 208 VVGKPSTFMMDYLANKF---GIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSM 264 (292)
Q Consensus 208 ~~gKP~~~~~~~~~~~l---gi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~ 264 (292)
..+-.|..+++++++++ |++++++++|||+ .||++|.+.+|..++.| |++..+-
T Consensus 171 p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs-~NDleMl~~ag~~gvam--~NA~~el 227 (413)
T PLN02382 171 PQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDS-GNDAELFSVPDVYGVMV--SNAQEEL 227 (413)
T ss_pred eCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCC-HHHHHHHhcCCCCEEEE--cCCcHHH
Confidence 33555678888899999 9999999999999 69999999999655544 6666544
No 113
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.08 E-value=5.4e-10 Score=82.91 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=47.8
Q ss_pred hhhhhhceeEEEeeeeeeeCCccCCC---------HH--HHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCC
Q 022757 4 SLLTLLRLSFLTVMVIIWKGDKLIDG---------VP--ETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 67 (292)
Q Consensus 4 ~~~~~~k~i~fDiDGtL~~~~~~i~~---------a~--eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~ 67 (292)
.-+.++|.++||+||||.||.-.+.. +. ..|+.|.+.|+++.++|+ |...-+..+.+++|+
T Consensus 3 ~ra~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITG---r~s~ive~Ra~~LGI 74 (170)
T COG1778 3 ARAKNIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITG---RDSPIVEKRAKDLGI 74 (170)
T ss_pred hhhhhceEEEEeccceeecCeEEEcCCCceeeeeeccCcHHHHHHHHcCCeEEEEeC---CCCHHHHHHHHHcCC
Confidence 34567999999999999987632211 11 469999999999999999 777777778888887
No 114
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.03 E-value=6.2e-10 Score=91.13 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=47.4
Q ss_pred HHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHh
Q 022757 218 DYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 290 (292)
Q Consensus 218 ~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~ 290 (292)
..++++++.++++|++|||+ .+|+.+|++||+..+ . +.- .+... ....|.+.++++.|+.+.+.+
T Consensus 150 ~~~l~~~~~~~~~~i~iGDs-~~Di~aa~~Ag~~~a--~-~~l-~~~~~---~~~~~~~~~~~f~ei~~~l~~ 214 (219)
T PRK09552 150 PSLIRKLSDTNDFHIVIGDS-ITDLEAAKQADKVFA--R-DFL-ITKCE---ELGIPYTPFETFHDVQTELKH 214 (219)
T ss_pred HHHHHHhccCCCCEEEEeCC-HHHHHHHHHCCccee--H-HHH-HHHHH---HcCCCccccCCHHHHHHHHHH
Confidence 46888999999999999999 699999999998322 2 211 11111 123688889999999877654
No 115
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.03 E-value=8.7e-09 Score=83.06 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=39.6
Q ss_pred CCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecC
Q 022757 211 KPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSG 258 (292)
Q Consensus 211 KP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G 258 (292)
+|++.++..+++++|++++++++|||+ .+|+.+|+.+|+..+.-..+
T Consensus 146 ~~k~~~~~~~~~~~~~~~~~~i~iGDs-~~D~~~a~~ag~~~a~~~~~ 192 (201)
T TIGR01491 146 DNKGEAVERLKRELNPSLTETVAVGDS-KNDLPMFEVADISISLGDEG 192 (201)
T ss_pred ccHHHHHHHHHHHhCCCHHHEEEEcCC-HhHHHHHHhcCCeEEECCCc
Confidence 455678999999999999999999999 69999999999866554433
No 116
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.00 E-value=1.3e-09 Score=84.16 Aligned_cols=42 Identities=31% Similarity=0.466 Sum_probs=33.6
Q ss_pred cCCcHHHHHHHHHHcC----CCCCcEEEECCCc----------hhhHHHHHhcCCe
Q 022757 210 GKPSTFMMDYLANKFG----IQKSQICMVGDRL----------DTDILFGQNGGCK 251 (292)
Q Consensus 210 gKP~~~~~~~~~~~lg----i~~~~~~~iGD~l----------~~Di~~a~~aG~~ 251 (292)
.||.+.+++.+++.++ ++.++++||||.. .+|...|.++|++
T Consensus 96 RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~ 151 (159)
T PF08645_consen 96 RKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIK 151 (159)
T ss_dssp STTSSHHHHHHCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--
T ss_pred CCCchhHHHHHHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCc
Confidence 8999999999999987 4999999999941 4899999999976
No 117
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.97 E-value=3.3e-09 Score=81.25 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=32.9
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCC
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGC 250 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~ 250 (292)
+||+ |..+++++|++|++|++|||+ .+|+++++++|+
T Consensus 100 ~KP~---~~k~l~~l~~~p~~~i~i~Ds-~~~~~aa~~ngI 136 (148)
T smart00577 100 VKGK---YVKDLSLLGRDLSNVIIIDDS-PDSWPFHPENLI 136 (148)
T ss_pred cCCe---EeecHHHcCCChhcEEEEECC-HHHhhcCccCEE
Confidence 5665 777899999999999999999 599999999993
No 118
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.97 E-value=2e-09 Score=93.14 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=37.7
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCe
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCK 251 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~ 251 (292)
.||+|..+..+++.+|++++++++|||+ ..|+.++++++-.
T Consensus 85 ~~pk~~~i~~~~~~l~i~~~~~vfidD~-~~d~~~~~~~lp~ 125 (320)
T TIGR01686 85 WGPKSESLRKIAKKLNLGTDSFLFIDDN-PAERANVKITLPV 125 (320)
T ss_pred cCchHHHHHHHHHHhCCCcCcEEEECCC-HHHHHHHHHHCCC
Confidence 5899999999999999999999999999 5999999997743
No 119
>PTZ00445 p36-lilke protein; Provisional
Probab=98.97 E-value=6.7e-09 Score=81.83 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=45.1
Q ss_pred cCCcHHH--H--HHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecC
Q 022757 210 GKPSTFM--M--DYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSG 258 (292)
Q Consensus 210 gKP~~~~--~--~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G 258 (292)
-||.|.+ | ++++++.|++|++|++|.|+ ...+++|+++|+.++.+..+
T Consensus 156 ~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~-~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 156 DAPMPLDKSYHLKQVCSDFNVNPDEILFIDDD-MNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred cCCCccchHHHHHHHHHHcCCCHHHeEeecCC-HHHHHHHHHCCCEEEEcCCh
Confidence 8999999 9 99999999999999999999 58899999999999999743
No 120
>PLN02423 phosphomannomutase
Probab=98.95 E-value=6.9e-09 Score=86.23 Aligned_cols=52 Identities=12% Similarity=0.003 Sum_probs=42.9
Q ss_pred hceeE-EEeeeeeeeCCccCCC-HHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHc
Q 022757 9 LRLSF-LTVMVIIWKGDKLIDG-VPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFET 64 (292)
Q Consensus 9 ~k~i~-fDiDGtL~~~~~~i~~-a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~ 64 (292)
+|.++ |||||||+++++.++. ..+++++|+++ ++++++|| |....+.+.+..
T Consensus 6 ~~~i~~~D~DGTLl~~~~~i~~~~~~ai~~l~~~-i~fviaTG---R~~~~~~~~~~~ 59 (245)
T PLN02423 6 PGVIALFDVDGTLTAPRKEATPEMLEFMKELRKV-VTVGVVGG---SDLSKISEQLGK 59 (245)
T ss_pred cceEEEEeccCCCcCCCCcCCHHHHHHHHHHHhC-CEEEEECC---cCHHHHHHHhcc
Confidence 46555 9999999999887754 68999999987 99999999 777777776654
No 121
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.93 E-value=2.4e-08 Score=95.68 Aligned_cols=70 Identities=13% Similarity=0.009 Sum_probs=53.9
Q ss_pred eeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHH
Q 022757 207 LVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLS 286 (292)
Q Consensus 207 ~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~ 286 (292)
.+.+--|..+.+.+++ +++++.+++|||+ .||+.|.+.++-.+..|..|+.. ..++|++++.+++.+
T Consensus 652 ~p~~vnKG~al~~ll~--~~~~d~vl~~GD~-~nDe~Mf~~~~~~~~~v~vG~~~----------s~A~~~l~~~~eV~~ 718 (726)
T PRK14501 652 RPAGVNKGRAVRRLLE--AGPYDFVLAIGDD-TTDEDMFRALPETAITVKVGPGE----------SRARYRLPSQREVRE 718 (726)
T ss_pred EECCCCHHHHHHHHHh--cCCCCEEEEECCC-CChHHHHHhcccCceEEEECCCC----------CcceEeCCCHHHHHH
Confidence 3445566788888888 7788999999999 59999999986445666667532 257899999999877
Q ss_pred hHH
Q 022757 287 LKA 289 (292)
Q Consensus 287 ~~~ 289 (292)
+|.
T Consensus 719 ~L~ 721 (726)
T PRK14501 719 LLR 721 (726)
T ss_pred HHH
Confidence 665
No 122
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.85 E-value=1.5e-08 Score=84.34 Aligned_cols=194 Identities=19% Similarity=0.192 Sum_probs=98.5
Q ss_pred hceeEEEeeeeeeeCCcc-CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHH-------
Q 022757 9 LRLSFLTVMVIIWKGDKL-IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFA------- 80 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~-i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~------- 80 (292)
.++++.|+||||++++.. .....+.++.....++.++++|| |+..++.+.+.+.++.. ++.++++.+.
T Consensus 2 ~~ll~sDlD~Tl~~~~~~~~~~l~~~l~~~~~~~~~~v~~TG---Rs~~~~~~~~~~~~l~~-Pd~~I~svGt~I~~~~~ 77 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGDDEALARLEELLEQQARPEILFVYVTG---RSLESVLRLLREYNLPQ-PDYIITSVGTEIYYGEN 77 (247)
T ss_dssp SEEEEEETBTTTBHCHHHHHHHHHHHHHHHHCCGEEEEEE-S---S-HHHHHHHHHHCT-EE--SEEEETTTTEEEESST
T ss_pred CEEEEEECCCCCcCCCHHHHHHHHHHHHHhhCCCceEEEECC---CCHHHHHHHHHhCCCCC-CCEEEecCCeEEEEcCC
Confidence 368999999999944332 11112233323356778899999 99999999999888753 4566665432
Q ss_pred ------HHHHHHhcCCCCCCeEEEEcChhHHHHHHHc-CCeecCCCCCCCCccccCCCCccCCCCCccEEEEeccCCcCH
Q 022757 81 ------AAAYLKSIDFPKDKKVYVVGEDGILKELELA-GFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNY 153 (292)
Q Consensus 81 ------~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 153 (292)
....+... . ..+.+.+.+.+. ++..-. . .....-+..+.+. .. ...
T Consensus 78 ~~~d~~w~~~i~~~-w---------~~~~v~~~l~~~~~l~~q~--~------------~~q~~~k~sy~~~-~~-~~~- 130 (247)
T PF05116_consen 78 WQPDEEWQAHIDER-W---------DRERVEEILAELPGLRPQP--E------------SEQRPFKISYYVD-PD-DSA- 130 (247)
T ss_dssp TEE-HHHHHHHHTT------------HHHHHHHHHCHCCEEEGG--C------------CCGCCTCECEEEE-TT-SHC-
T ss_pred CcChHHHHHHHHhc-C---------ChHHHHHHHHHhhCcccCC--c------------cccCCeeEEEEEe-cc-cch-
Confidence 11222211 1 113333333332 221100 0 0001112222221 11 111
Q ss_pred HHHHHHHHHHHcCCCcE--EEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE
Q 022757 154 YKVQYGTLCIRENPGCL--FIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 231 (292)
Q Consensus 154 ~~~~~~~~~l~~~~~~~--~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~ 231 (292)
..+......++ ..+.. ++.+|.... +..+.+-.|..+.++++++++++++++
T Consensus 131 ~~~~~i~~~l~-~~~l~~~~i~s~~~~l-------------------------dilP~~a~K~~Al~~L~~~~~~~~~~v 184 (247)
T PF05116_consen 131 DILEEIRARLR-QRGLRVNVIYSNGRDL-------------------------DILPKGASKGAALRYLMERWGIPPEQV 184 (247)
T ss_dssp HHHHHHHHHHH-CCTCEEEEEECTCCEE-------------------------EEEETT-SHHHHHHHHHHHHT--GGGE
T ss_pred hHHHHHHHHHH-HcCCCeeEEEccceeE-------------------------EEccCCCCHHHHHHHHHHHhCCCHHHE
Confidence 11333333343 34543 343333211 122223345677888999999999999
Q ss_pred EEECCCchhhHHHHHhcCCeEEEEecCCCChh
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLS 263 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~ 263 (292)
+++||| .||+.|. ..+..+|.| |+..++
T Consensus 185 l~aGDS-gND~~mL-~~~~~~vvV--~Na~~e 212 (247)
T PF05116_consen 185 LVAGDS-GNDLEML-EGGDHGVVV--GNAQPE 212 (247)
T ss_dssp EEEESS-GGGHHHH-CCSSEEEE---TTS-HH
T ss_pred EEEeCC-CCcHHHH-cCcCCEEEE--cCCCHH
Confidence 999999 6999999 667788877 455555
No 123
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.84 E-value=5.7e-09 Score=86.67 Aligned_cols=69 Identities=12% Similarity=0.160 Sum_probs=56.2
Q ss_pred hhceeEEEeeeeeeeCCccC----CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHH
Q 022757 8 LLRLSFLTVMVIIWKGDKLI----DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF 79 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~~~i----~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~ 79 (292)
.+|.|+||+||||++.++.+ |++.++|+.|+++|++++++|| .++..+.+.++.+|++--.+.|++++.
T Consensus 125 ~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS---~~Re~v~~~L~~lGLd~YFdvIIs~Gd 197 (301)
T TIGR01684 125 PPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSY---GDRDHVVESMRKVKLDRYFDIIISGGH 197 (301)
T ss_pred cceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEEC---CCHHHHHHHHHHcCCCcccCEEEECCc
Confidence 46999999999999887753 7899999999999999999999 566677788999999743345555544
No 124
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.77 E-value=1.8e-08 Score=82.21 Aligned_cols=64 Identities=11% Similarity=-0.022 Sum_probs=44.7
Q ss_pred HHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHh
Q 022757 219 YLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 290 (292)
Q Consensus 219 ~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~ 290 (292)
.++++++..+++++||||+ .+|+.+|+.||+ +++. +.-. +.... ...|....+++.|+.+.|.+
T Consensus 147 ~~l~~~~~~~~~~i~iGDg-~~D~~~a~~Ad~--~~ar-~~l~-~~~~~---~~~~~~~~~~f~di~~~l~~ 210 (214)
T TIGR03333 147 SLIRKLSEPNDYHIVIGDS-VTDVEAAKQSDL--CFAR-DYLL-NECEE---LGLNHAPFQDFYDVRKELEN 210 (214)
T ss_pred HHHHHHhhcCCcEEEEeCC-HHHHHHHHhCCe--eEeh-HHHH-HHHHH---cCCCccCcCCHHHHHHHHHH
Confidence 5677777788999999999 699999999996 3333 3211 11111 12467778999999887754
No 125
>PLN02580 trehalose-phosphatase
Probab=98.76 E-value=1.1e-06 Score=76.75 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=50.9
Q ss_pred cCCcHHHHHHHHHHcCCCCCc---EEEECCCchhhHHHHHhcCC--eEEEEecCCCChhhccCCCCCCCCcEEeCCHhhH
Q 022757 210 GKPSTFMMDYLANKFGIQKSQ---ICMVGDRLDTDILFGQNGGC--KTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDF 284 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~---~~~iGD~l~~Di~~a~~aG~--~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l 284 (292)
+--|..+.+.+++++|++..+ .++|||+ .||..|.+.+.- ..+.|..|++..+ ..+.|.+++..++
T Consensus 299 g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD-~TDedmF~~L~~~~~G~~I~Vgn~~~~--------t~A~y~L~dp~eV 369 (384)
T PLN02580 299 DWNKGKAVEFLLESLGLSNCDDVLPIYIGDD-RTDEDAFKVLREGNRGYGILVSSVPKE--------SNAFYSLRDPSEV 369 (384)
T ss_pred CCCHHHHHHHHHHhcCCCcccceeEEEECCC-chHHHHHHhhhccCCceEEEEecCCCC--------ccceEEcCCHHHH
Confidence 445677888899999988664 3899999 699999996311 1134444543321 3579999999999
Q ss_pred HHhHHh
Q 022757 285 LSLKAA 290 (292)
Q Consensus 285 ~~~~~~ 290 (292)
.++|..
T Consensus 370 ~~~L~~ 375 (384)
T PLN02580 370 MEFLKS 375 (384)
T ss_pred HHHHHH
Confidence 887754
No 126
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.76 E-value=2.1e-07 Score=74.11 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=32.5
Q ss_pred eecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCC
Q 022757 208 VVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGC 250 (292)
Q Consensus 208 ~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~ 250 (292)
..|.+++.+++.+.+.. ++++++|||+ .+|+.+|+++++
T Consensus 145 ~~g~~K~~~~~~~~~~~---~~~~i~iGD~-~~D~~aa~~~d~ 183 (188)
T TIGR01489 145 PCGCCKGKVIHKLSEPK---YQHIIYIGDG-VTDVCPAKLSDV 183 (188)
T ss_pred CCCCCHHHHHHHHHhhc---CceEEEECCC-cchhchHhcCCc
Confidence 34677788888887765 7899999999 599999999864
No 127
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=98.76 E-value=5.6e-08 Score=78.30 Aligned_cols=68 Identities=12% Similarity=0.011 Sum_probs=44.7
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcE-EeCCHhhHHHhH
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDF-YTNKISDFLSLK 288 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~-~~~~l~~l~~~~ 288 (292)
.||.+..+...++..+. ++++|||+ .||+.|++.||+..++-....- .+ ..||+ ++.+.+||.+.+
T Consensus 129 ~~~~K~~~l~~l~~~~~---~~v~vGDs-~nDl~ml~~Ag~~ia~~ak~~~-----~~----~~~~~~~~~~~~~~~~~~ 195 (203)
T TIGR02137 129 QKDPKRQSVIAFKSLYY---RVIAAGDS-YNDTTMLSEAHAGILFHAPENV-----IR----EFPQFPAVHTYEDLKREF 195 (203)
T ss_pred CcchHHHHHHHHHhhCC---CEEEEeCC-HHHHHHHHhCCCCEEecCCHHH-----HH----hCCCCCcccCHHHHHHHH
Confidence 45555555555566664 79999999 6999999999977776543221 11 12333 467888888766
Q ss_pred Hh
Q 022757 289 AA 290 (292)
Q Consensus 289 ~~ 290 (292)
..
T Consensus 196 ~~ 197 (203)
T TIGR02137 196 LK 197 (203)
T ss_pred HH
Confidence 54
No 128
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.71 E-value=2.5e-08 Score=73.30 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=34.4
Q ss_pred ceeEEEeeeeeeeCC-c------cCCCHHHHHHHHHHCCCcEEEEeCCC
Q 022757 10 RLSFLTVMVIIWKGD-K------LIDGVPETLDMLRSKGKRLVFVTNNS 51 (292)
Q Consensus 10 k~i~fDiDGtL~~~~-~------~i~~a~eal~~L~~~G~~~~~~Tn~s 51 (292)
|+|+||+||||.+.+ + +.+++.++++.|+++|+.++++|+.+
T Consensus 2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~ 50 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRN 50 (126)
T ss_pred CEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 899999999998643 2 23457788988999999999999933
No 129
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.70 E-value=9.4e-08 Score=77.72 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=37.5
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcC
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGG 249 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG 249 (292)
+||++.+|..+++.+++++++|+||||++ ||+.|+++||
T Consensus 177 ~kP~~k~~~~~i~~l~~~~~~v~~vGDg~-nD~~al~~Ag 215 (215)
T PF00702_consen 177 GKPEPKIFLRIIKELQVKPGEVAMVGDGV-NDAPALKAAG 215 (215)
T ss_dssp TTTHHHHHHHHHHHHTCTGGGEEEEESSG-GHHHHHHHSS
T ss_pred ccccchhHHHHHHHHhcCCCEEEEEccCH-HHHHHHHhCc
Confidence 89999999999999999999999999995 9999999997
No 130
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.67 E-value=4.2e-08 Score=81.69 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=55.8
Q ss_pred hhceeEEEeeeeeeeCCccC----CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHH
Q 022757 8 LLRLSFLTVMVIIWKGDKLI----DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFA 80 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~~~i----~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~ 80 (292)
..|.|+||+||||++.+..+ |++.++|+.|+++|++++++|| .++..+...++.+|++.-.+.|++++..
T Consensus 127 ~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTN---g~Re~v~~~Le~lgL~~yFDvII~~g~i 200 (303)
T PHA03398 127 IPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSY---GNREHVVHSLKETKLEGYFDIIICGGRK 200 (303)
T ss_pred eccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcC---CChHHHHHHHHHcCCCccccEEEECCCc
Confidence 46899999999999887764 8899999999999999999999 4556667788889986333445555443
No 131
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.67 E-value=1e-06 Score=85.01 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=44.6
Q ss_pred hhceeEEEeeeeeeeCC----ccCCCHHHHHHHH-HHCCCcEEEEeCCCCCCHHHHHHHHHcC
Q 022757 8 LLRLSFLTVMVIIWKGD----KLIDGVPETLDML-RSKGKRLVFVTNNSTKSRKQYGKKFETL 65 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~----~~i~~a~eal~~L-~~~G~~~~~~Tn~s~r~~~~~~~~l~~l 65 (292)
+.++|++|+||||.... .+-++..++|++| ++.|..++++|| |+...+.+.+...
T Consensus 595 ~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSG---R~~~~L~~~f~~~ 654 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSA---RSRKTLADWFSPC 654 (854)
T ss_pred cCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeC---CCHHHHHHHhCCC
Confidence 47899999999999543 2334577899998 677999999999 9999988888653
No 132
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.66 E-value=3.5e-08 Score=76.12 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=41.3
Q ss_pred eeEEEeeeeeeeCC-----------cc-CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHH---HHHHHc
Q 022757 11 LSFLTVMVIIWKGD-----------KL-IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQY---GKKFET 64 (292)
Q Consensus 11 ~i~fDiDGtL~~~~-----------~~-i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~---~~~l~~ 64 (292)
.|+|||||||.+++ .+ .|++.+++++++++|++++++|+ |+.... .+.+..
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TG---Rp~~~~~~t~~~l~~ 66 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTA---RPIGQADRTRSYLSQ 66 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcC---CcHHHHHHHHHHHHH
Confidence 48999999999887 34 47799999999999999999999 665554 345544
No 133
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=98.61 E-value=9.2e-07 Score=67.50 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=66.0
Q ss_pred cCHHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCc
Q 022757 151 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 230 (292)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~ 230 (292)
.-|++...+++.-+. .|.+++.-+...+-...-.--.-..|.+...+....+. ..-+|-...-|..++...|++|.+
T Consensus 103 hlypDav~~ik~wk~-~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDt--tiG~KrE~~SY~kIa~~iGl~p~e 179 (229)
T COG4229 103 HLYPDAVQAIKRWKA-LGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDT--TIGKKRESQSYAKIAGDIGLPPAE 179 (229)
T ss_pred ccCHhHHHHHHHHHH-cCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeec--cccccccchhHHHHHHhcCCCchh
Confidence 356666666665553 56665544333321110000011223333333332222 223677888899999999999999
Q ss_pred EEEECCCchhhHHHHHhcCCeEEEEec-CCC
Q 022757 231 ICMVGDRLDTDILFGQNGGCKTLLVLS-GVT 260 (292)
Q Consensus 231 ~~~iGD~l~~Di~~a~~aG~~~i~V~~-G~~ 260 (292)
++++.|+ .+.+.+|+.+||.|+++.. |+.
T Consensus 180 ilFLSDn-~~EL~AA~~vGl~t~l~~R~g~~ 209 (229)
T COG4229 180 ILFLSDN-PEELKAAAGVGLATGLAVRPGNA 209 (229)
T ss_pred eEEecCC-HHHHHHHHhcchheeeeecCCCC
Confidence 9999999 5999999999999998854 543
No 134
>PLN03017 trehalose-phosphatase
Probab=98.49 E-value=1.8e-05 Score=68.58 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=47.8
Q ss_pred CcHHHHHHHHHHcCCCC---CcEEEECCCchhhHHHHHhcC-C---eEEEEecCCCChhhccCCCCCCCCcEEeCCHhhH
Q 022757 212 PSTFMMDYLANKFGIQK---SQICMVGDRLDTDILFGQNGG-C---KTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDF 284 (292)
Q Consensus 212 P~~~~~~~~~~~lgi~~---~~~~~iGD~l~~Di~~a~~aG-~---~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l 284 (292)
-|..+.+.+++.++... .-.++|||+ .+|-.+.+.+. . -+|.| |.... ...+.|.+++.+++
T Consensus 283 dKG~Av~~LL~~l~~~~~~~~~pvyiGDD-~TDEDaF~~L~~~~~G~gI~V--G~~~k--------~T~A~y~L~dp~eV 351 (366)
T PLN03017 283 DKGKALEFLLESLGFGNTNNVFPVYIGDD-RTDEDAFKMLRDRGEGFGILV--SKFPK--------DTDASYSLQDPSEV 351 (366)
T ss_pred CHHHHHHHHHHhcccccCCCceEEEeCCC-CccHHHHHHHhhcCCceEEEE--CCCCC--------CCcceEeCCCHHHH
Confidence 45677888899887653 248999999 69999988762 2 34555 43221 13579999999998
Q ss_pred HHhHHh
Q 022757 285 LSLKAA 290 (292)
Q Consensus 285 ~~~~~~ 290 (292)
.++|..
T Consensus 352 ~~fL~~ 357 (366)
T PLN03017 352 MDFLAR 357 (366)
T ss_pred HHHHHH
Confidence 877653
No 135
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.48 E-value=4.1e-07 Score=71.74 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=33.6
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhc
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNG 248 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~a 248 (292)
+..++..+..+++.++++++++++|||+ .+|+.+++.+
T Consensus 140 ~~~K~~~l~~~~~~~~~~~~~~~~iGDs-~~D~~~~~~a 177 (177)
T TIGR01488 140 GECKGKVLKELLEESKITLKKIIAVGDS-VNDLPMLKLA 177 (177)
T ss_pred cchHHHHHHHHHHHhCCCHHHEEEEeCC-HHHHHHHhcC
Confidence 5667788888899999999999999999 6999999864
No 136
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.47 E-value=9e-07 Score=71.72 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=38.5
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEE
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLL 254 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~ 254 (292)
++-+......+++.+|+++++++++||+ .||+.|.+.+|...+.
T Consensus 142 ~~~K~~~l~~~~~~~g~~~~~~~a~gDs-~nDlpml~~ag~~ia~ 185 (212)
T COG0560 142 GEGKAKALRELAAELGIPLEETVAYGDS-ANDLPMLEAAGLPIAV 185 (212)
T ss_pred cchHHHHHHHHHHHcCCCHHHeEEEcCc-hhhHHHHHhCCCCeEe
Confidence 5667788889999999999999999999 6999999999965443
No 137
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.40 E-value=9.1e-07 Score=73.78 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=55.2
Q ss_pred hhceeEEEeeeeeeeCC---------------------------ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHH
Q 022757 8 LLRLSFLTVMVIIWKGD---------------------------KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGK 60 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~---------------------------~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~ 60 (292)
+..+|+||||+|+++.. .++||+.++++.|+++|++++++||++........+
T Consensus 74 kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~ 153 (266)
T TIGR01533 74 KKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLK 153 (266)
T ss_pred CCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHH
Confidence 35699999999996322 246999999999999999999999987777777888
Q ss_pred HHHcCCCCC-CCCceec
Q 022757 61 KFETLGLTV-TEEEIFA 76 (292)
Q Consensus 61 ~l~~lG~~~-~~~~i~~ 76 (292)
.|+.+|++. ..+.++.
T Consensus 154 ~Lkk~Gi~~~~~d~lll 170 (266)
T TIGR01533 154 NLKRFGFPQADEEHLLL 170 (266)
T ss_pred HHHHcCcCCCCcceEEe
Confidence 899999974 3444543
No 138
>PLN02151 trehalose-phosphatase
Probab=98.39 E-value=2.8e-05 Score=67.28 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=41.3
Q ss_pred ceeEEEeeeeee----eCCc--cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCC
Q 022757 10 RLSFLTVMVIIW----KGDK--LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLG 66 (292)
Q Consensus 10 k~i~fDiDGtL~----~~~~--~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG 66 (292)
.++|+|+||||. +.+. +-++..++|+.|. ++.+++++|| |+...+.+.+.-.+
T Consensus 99 ~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La-~~~~vaIvSG---R~~~~l~~~~~~~~ 157 (354)
T PLN02151 99 IVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLA-KCFPTAIVSG---RCREKVSSFVKLTE 157 (354)
T ss_pred eEEEEecCccCCCCCCCcccccCCHHHHHHHHHHh-cCCCEEEEEC---CCHHHHHHHcCCcc
Confidence 589999999999 5444 2355789999999 4579999999 88888877764333
No 139
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.32 E-value=4.7e-06 Score=71.90 Aligned_cols=41 Identities=15% Similarity=0.326 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCCCcEEEECCCchhhHHHHH-hcCCeEEEEec
Q 022757 217 MDYLANKFGIQKSQICMVGDRLDTDILFGQ-NGGCKTLLVLS 257 (292)
Q Consensus 217 ~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~-~aG~~~i~V~~ 257 (292)
+..+.+.+|++++++++|||++.+||.+++ .+||+|++|..
T Consensus 283 ~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 283 LKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred HHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence 344678889999999999999999999998 99999999975
No 140
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.23 E-value=5.9e-06 Score=80.63 Aligned_cols=65 Identities=15% Similarity=0.087 Sum_probs=51.3
Q ss_pred HHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHH
Q 022757 217 MDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 289 (292)
Q Consensus 217 ~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~ 289 (292)
-..+++.++.++++++||||+ .||+.++++|| +.|.+|.+.....+. ..+....+++.++.+++.
T Consensus 701 K~~~i~~l~~~~~~v~~vGDg-~nD~~al~~Ag---vgia~g~g~~~a~~~----ad~vl~~~~~~~i~~~i~ 765 (834)
T PRK10671 701 KAEAIKRLQSQGRQVAMVGDG-INDAPALAQAD---VGIAMGGGSDVAIET----AAITLMRHSLMGVADALA 765 (834)
T ss_pred HHHHHHHHhhcCCEEEEEeCC-HHHHHHHHhCC---eeEEecCCCHHHHHh----CCEEEecCCHHHHHHHHH
Confidence 345777788788899999999 59999999999 588888877655442 456677789999887765
No 141
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.23 E-value=9.9e-06 Score=62.78 Aligned_cols=49 Identities=22% Similarity=0.235 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCCh
Q 022757 213 STFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSL 262 (292)
Q Consensus 213 ~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~ 262 (292)
+...|..+.+..|++.+++++|-|. ...++-.++.|+.+++|..|.+..
T Consensus 109 K~~Hf~~i~~~tgI~y~eMlFFDDe-~~N~~~v~~lGV~~v~v~~Glt~~ 157 (169)
T PF12689_consen 109 KTTHFRRIHRKTGIPYEEMLFFDDE-SRNIEVVSKLGVTCVLVPDGLTWD 157 (169)
T ss_dssp HHHHHHHHHHHH---GGGEEEEES--HHHHHHHHTTT-EEEE-SSS--HH
T ss_pred hHHHHHHHHHhcCCChhHEEEecCc-hhcceeeEecCcEEEEeCCCCCHH
Confidence 3455667889999999999999999 688888999999999999887654
No 142
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.23 E-value=2.1e-05 Score=73.35 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=41.1
Q ss_pred CCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEe--CCHhhHHHhHH
Q 022757 227 QKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT--NKISDFLSLKA 289 (292)
Q Consensus 227 ~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~--~~l~~l~~~~~ 289 (292)
++++|+||||+ .||+.+++++| +.|.+|.+..... ..+|+++ +++.++.+++.
T Consensus 465 ~~~~v~~VGDg-~nD~~al~~A~---vgia~g~g~~~a~------~~Advvl~~~~l~~l~~~i~ 519 (562)
T TIGR01511 465 KGRVVAMVGDG-INDAPALAQAD---VGIAIGAGTDVAI------EAADVVLMRNDLNDVATAID 519 (562)
T ss_pred cCCEEEEEeCC-CccHHHHhhCC---EEEEeCCcCHHHH------hhCCEEEeCCCHHHHHHHHH
Confidence 56799999999 59999999999 5788886542221 3689999 58888877654
No 143
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.21 E-value=2.3e-05 Score=58.19 Aligned_cols=88 Identities=23% Similarity=0.237 Sum_probs=64.8
Q ss_pred EEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHc-C----CCCCcEEEECCCchhhHHH
Q 022757 170 LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKF-G----IQKSQICMVGDRLDTDILF 244 (292)
Q Consensus 170 ~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~l-g----i~~~~~~~iGD~l~~Di~~ 244 (292)
.++.||.--.. .....++....++.-.+..+....+-+|..-++..+++ | ..+++++||||++-+||.+
T Consensus 82 i~v~SNsaG~~------~~D~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~ 155 (190)
T KOG2961|consen 82 IAVFSNSAGLT------EYDHDDSKAKALEAKIGIPVLRHSVKKPACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVY 155 (190)
T ss_pred EEEEecCcCcc------ccCCchHHHHHHHHhhCCceEeecccCCCccHHHHHHHhCCcccCChhHeEEEccchhhhHhh
Confidence 46667764421 12223567778888788777666666666656666554 4 5889999999999999999
Q ss_pred HHhcCCeEEEEecCCCChh
Q 022757 245 GQNGGCKTLLVLSGVTSLS 263 (292)
Q Consensus 245 a~~aG~~~i~V~~G~~~~~ 263 (292)
|+..|..++|...|....+
T Consensus 156 aN~mGs~gVw~~~gv~~~~ 174 (190)
T KOG2961|consen 156 ANRMGSLGVWTEPGVRAEE 174 (190)
T ss_pred hhhccceeEEecccccccc
Confidence 9999999999999876543
No 144
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.18 E-value=4.5e-05 Score=71.16 Aligned_cols=56 Identities=23% Similarity=0.311 Sum_probs=42.4
Q ss_pred hceeEEEeeeeee----eCCccCCCHHHHHHHHHHCC-CcEEEEeCCCCCCHHHHHHHHHcCCC
Q 022757 9 LRLSFLTVMVIIW----KGDKLIDGVPETLDMLRSKG-KRLVFVTNNSTKSRKQYGKKFETLGL 67 (292)
Q Consensus 9 ~k~i~fDiDGtL~----~~~~~i~~a~eal~~L~~~G-~~~~~~Tn~s~r~~~~~~~~l~~lG~ 67 (292)
...+++..||++. ..+.+.|++.++++.|+++| +++.++|| .+.......++.+|+
T Consensus 364 ~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTg---d~~~~a~~i~~~lgi 424 (556)
T TIGR01525 364 KTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTG---DNRSAAEAVAAELGI 424 (556)
T ss_pred cEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeC---CCHHHHHHHHHHhCC
Confidence 3568888887654 45667899999999999999 99999999 455544444455555
No 145
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.18 E-value=2.4e-05 Score=72.54 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=45.2
Q ss_pred HHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEe--CCHhhHHHhHH
Q 022757 221 ANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT--NKISDFLSLKA 289 (292)
Q Consensus 221 ~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~--~~l~~l~~~~~ 289 (292)
+++++.+.++++||||+ .||+.++++|| +.|.+|.+..+... ..+|+++ +++.++.+++.
T Consensus 418 i~~l~~~~~~v~~vGDg-~nD~~al~~A~---vgia~g~~~~~~~~-----~~ad~vl~~~~l~~l~~~i~ 479 (536)
T TIGR01512 418 VKELREKYGPVAMVGDG-INDAPALAAAD---VGIAMGASGSDVAI-----ETADVVLLNDDLSRLPQAIR 479 (536)
T ss_pred HHHHHhcCCEEEEEeCC-HHHHHHHHhCC---EEEEeCCCccHHHH-----HhCCEEEECCCHHHHHHHHH
Confidence 44444455799999999 59999999999 68888853323222 3689999 89999987664
No 146
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=98.08 E-value=0.00047 Score=59.22 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=43.4
Q ss_pred hhceeEEEeeeeeeeCCccC-CC--HHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcC
Q 022757 8 LLRLSFLTVMVIIWKGDKLI-DG--VPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETL 65 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~~~i-~~--a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~l 65 (292)
..|.|.||=|+||++.++-+ +. ...-|-+|-.+|+.|.++|-..--....+.++|..|
T Consensus 146 ~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~a~kY~~RL~GL 206 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPGAEKYEERLHGL 206 (408)
T ss_pred CceEEEEcCCcccccCCCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 56899999999999655444 44 346677788899999999986655666677776553
No 147
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.98 E-value=1.4e-05 Score=63.10 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=48.9
Q ss_pred hhceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 8 LLRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+++.||.|+||||+.-..-+..|...+..|++.|++++++|. ++..+....-+.+|+.
T Consensus 6 ~~~lIFtDlD~TLl~~~ye~~pA~pv~~el~d~G~~Vi~~SS---KT~aE~~~l~~~l~v~ 63 (274)
T COG3769 6 MPLLIFTDLDGTLLPHSYEWQPAAPVLLELKDAGVPVILCSS---KTRAEMLYLQKSLGVQ 63 (274)
T ss_pred cceEEEEcccCcccCCCCCCCccchHHHHHHHcCCeEEEecc---chHHHHHHHHHhcCCC
Confidence 479999999999998333343488899999999999999998 8888888777888886
No 148
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=97.98 E-value=0.00021 Score=70.25 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=45.5
Q ss_pred HHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEe--CCHhhHHHhHHh
Q 022757 220 LANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT--NKISDFLSLKAA 290 (292)
Q Consensus 220 ~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~--~~l~~l~~~~~~ 290 (292)
+.+.++-..+.+.|+||+ .||..++++|+ |+|.+|.+..+... ..+|+++ +++..+.+++.-
T Consensus 609 iv~~lq~~g~~v~mvGDG-vND~pAl~~Ad---VGia~g~~g~~va~-----~aaDivl~dd~~~~i~~~i~~ 672 (884)
T TIGR01522 609 IVKALQKRGDVVAMTGDG-VNDAPALKLAD---IGVAMGQTGTDVAK-----EAADMILTDDDFATILSAIEE 672 (884)
T ss_pred HHHHHHHCCCEEEEECCC-cccHHHHHhCC---eeEecCCCcCHHHH-----HhcCEEEcCCCHHHHHHHHHH
Confidence 344444344789999999 59999999999 78888864333322 3689999 779998876653
No 149
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.97 E-value=3.1e-05 Score=58.91 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=37.6
Q ss_pred eeEEEeeeeeeeCC------------ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHH
Q 022757 11 LSFLTVMVIIWKGD------------KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQ 57 (292)
Q Consensus 11 ~i~fDiDGtL~~~~------------~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~ 57 (292)
.|++||||||..++ ...+|+.+..+++.++|++++.+|. |+.-+
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTa---Rp~~q 56 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTA---RPIGQ 56 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECc---CcHHH
Confidence 48999999999875 3458899999999999999999999 66543
No 150
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.93 E-value=0.00012 Score=61.29 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=27.1
Q ss_pred HHHHHHHHHcC--CCCCcEEEECCCchhhHHHHHhc
Q 022757 215 FMMDYLANKFG--IQKSQICMVGDRLDTDILFGQNG 248 (292)
Q Consensus 215 ~~~~~~~~~lg--i~~~~~~~iGD~l~~Di~~a~~a 248 (292)
..+..+.+.++ +++++|++|||+ .+|+.||.-+
T Consensus 196 ~v~~~~~~~~~~~~~~~~vI~vGDs-~~Dl~ma~g~ 230 (277)
T TIGR01544 196 DVALRNTEYFNQLKDRSNIILLGDS-QGDLRMADGV 230 (277)
T ss_pred HHHHHHHHHhCccCCcceEEEECcC-hhhhhHhcCC
Confidence 45556778888 899999999999 5999998644
No 151
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=97.93 E-value=0.00028 Score=51.14 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=47.0
Q ss_pred HHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHH
Q 022757 220 LANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 289 (292)
Q Consensus 220 ~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~ 289 (292)
+++.|+-+-+.|+||||+ .||+.+.++|-+..+-+..+.-+..-++ .+|+++.++.|+++++.
T Consensus 85 ii~eLkk~~~k~vmVGnG-aND~laLr~ADlGI~tiq~e~v~~r~l~------~ADvvik~i~e~ldl~~ 147 (152)
T COG4087 85 IIRELKKRYEKVVMVGNG-ANDILALREADLGICTIQQEGVPERLLL------TADVVLKEIAEILDLLK 147 (152)
T ss_pred HHHHhcCCCcEEEEecCC-cchHHHhhhcccceEEeccCCcchHHHh------hchhhhhhHHHHHHHhh
Confidence 456666566889999999 6999999999876665554333333332 58999999999988764
No 152
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.79 E-value=1.3e-05 Score=65.87 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=49.6
Q ss_pred hhceeEEEeeeeeeeC---------------------------CccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHH
Q 022757 8 LLRLSFLTVMVIIWKG---------------------------DKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGK 60 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~---------------------------~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~ 60 (292)
...+|+||||+|+++. ..++|++.++++.++++|..|+|+||.+...+....+
T Consensus 71 ~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~ 150 (229)
T PF03767_consen 71 KPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEK 150 (229)
T ss_dssp SEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHH
T ss_pred CCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHH
Confidence 3679999999998642 1468999999999999999999999966665666677
Q ss_pred HHHcCCCC
Q 022757 61 KFETLGLT 68 (292)
Q Consensus 61 ~l~~lG~~ 68 (292)
-|.+.|+.
T Consensus 151 nL~~~G~~ 158 (229)
T PF03767_consen 151 NLKKAGFP 158 (229)
T ss_dssp HHHHHTTS
T ss_pred HHHHcCCC
Confidence 77777764
No 153
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.77 E-value=4.3e-05 Score=62.13 Aligned_cols=60 Identities=8% Similarity=0.060 Sum_probs=46.9
Q ss_pred hceeEEEeeeeeeeCC---------------------------ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHH
Q 022757 9 LRLSFLTVMVIIWKGD---------------------------KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKK 61 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~---------------------------~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~ 61 (292)
..+++||||-|+++.. .++|++.++++.|+++|+.++++||.+...+....+.
T Consensus 77 ~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~n 156 (229)
T TIGR01675 77 MDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDN 156 (229)
T ss_pred CcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHH
Confidence 4689999999987521 3467888999999999999999999443333446778
Q ss_pred HHcCCCC
Q 022757 62 FETLGLT 68 (292)
Q Consensus 62 l~~lG~~ 68 (292)
|.+.|++
T Consensus 157 L~~~G~~ 163 (229)
T TIGR01675 157 LINAGFT 163 (229)
T ss_pred HHHcCCC
Confidence 8888886
No 154
>PRK08238 hypothetical protein; Validated
Probab=97.68 E-value=9.2e-05 Score=67.31 Aligned_cols=94 Identities=16% Similarity=0.077 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcEEE
Q 022757 154 YKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICM 233 (292)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~~~ 233 (292)
+...+.++.+++......++||.+..... ......+. ++.+....+.. ..||++.. +.+.+.++ .+++.+
T Consensus 75 pga~e~L~~lk~~G~~v~LaTas~~~~a~-~i~~~lGl---Fd~Vigsd~~~---~~kg~~K~-~~l~~~l~--~~~~~y 144 (479)
T PRK08238 75 EEVLDYLRAERAAGRKLVLATASDERLAQ-AVAAHLGL---FDGVFASDGTT---NLKGAAKA-AALVEAFG--ERGFDY 144 (479)
T ss_pred hhHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHHHcCC---CCEEEeCCCcc---ccCCchHH-HHHHHHhC--ccCeeE
Confidence 34555556665432334666776654321 11111111 22222222221 24544432 23445555 356899
Q ss_pred ECCCchhhHHHHHhcCCeEEEEecCC
Q 022757 234 VGDRLDTDILFGQNGGCKTLLVLSGV 259 (292)
Q Consensus 234 iGD~l~~Di~~a~~aG~~~i~V~~G~ 259 (292)
+||+ .+|+.+++.+| ..+.|..+.
T Consensus 145 vGDS-~~Dlp~~~~A~-~av~Vn~~~ 168 (479)
T PRK08238 145 AGNS-AADLPVWAAAR-RAIVVGASP 168 (479)
T ss_pred ecCC-HHHHHHHHhCC-CeEEECCCH
Confidence 9999 69999999999 888887654
No 155
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.65 E-value=0.00011 Score=60.96 Aligned_cols=60 Identities=8% Similarity=0.117 Sum_probs=46.5
Q ss_pred hceeEEEeeeeeee----------------------------CCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHH
Q 022757 9 LRLSFLTVMVIIWK----------------------------GDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGK 60 (292)
Q Consensus 9 ~k~i~fDiDGtL~~----------------------------~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~ 60 (292)
..+++||||+|+++ ...++|++.+..+.++++|+.++++||.+...+....+
T Consensus 101 ~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~ 180 (275)
T TIGR01680 101 KDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEA 180 (275)
T ss_pred CCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHH
Confidence 47999999999871 11247888899999999999999999955444455666
Q ss_pred HHHcCCCC
Q 022757 61 KFETLGLT 68 (292)
Q Consensus 61 ~l~~lG~~ 68 (292)
-|.+.|++
T Consensus 181 NL~kaGy~ 188 (275)
T TIGR01680 181 NLKKAGYH 188 (275)
T ss_pred HHHHcCCC
Confidence 77778885
No 156
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=97.58 E-value=0.0018 Score=64.13 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=44.6
Q ss_pred HHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCC--HhhHHHhHH
Q 022757 220 LANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNK--ISDFLSLKA 289 (292)
Q Consensus 220 ~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~--l~~l~~~~~ 289 (292)
+.+.++-..+.+.|+||+ .||+.|.++|+ +.|.+|.++. ..+ ..+|+++.+ +..+.+++.
T Consensus 622 iV~~lq~~g~~va~iGDG-~ND~~alk~Ad---VGia~g~g~~-~ak-----~aAD~vl~dd~f~~i~~~i~ 683 (917)
T TIGR01116 622 LVELLQEQGEIVAMTGDG-VNDAPALKKAD---IGIAMGSGTE-VAK-----EASDMVLADDNFATIVAAVE 683 (917)
T ss_pred HHHHHHhcCCeEEEecCC-cchHHHHHhCC---eeEECCCCcH-HHH-----HhcCeEEccCCHHHHHHHHH
Confidence 444455455678899999 59999999999 6888885543 222 368999977 888887664
No 157
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=97.58 E-value=5.1e-05 Score=61.11 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=39.5
Q ss_pred eecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEE
Q 022757 208 VVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTL 253 (292)
Q Consensus 208 ~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i 253 (292)
..|+++...+++++++.++++++|+++||| .+|+.+++.+|...+
T Consensus 151 ~~g~~K~~~l~~~~~~~~~~~~~~~~~gDs-~~D~~~~~~a~~~~~ 195 (202)
T TIGR01490 151 CKGEGKVHALAELLAEEQIDLKDSYAYGDS-ISDLPLLSLVGHPYV 195 (202)
T ss_pred CCChHHHHHHHHHHHHcCCCHHHcEeeeCC-cccHHHHHhCCCcEE
Confidence 346788888999999999999999999999 599999999996554
No 158
>PRK11590 hypothetical protein; Provisional
Probab=97.51 E-value=0.0021 Score=52.19 Aligned_cols=33 Identities=15% Similarity=-0.029 Sum_probs=25.8
Q ss_pred HHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEE
Q 022757 221 ANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLV 255 (292)
Q Consensus 221 ~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V 255 (292)
.+.++.+.+.+.+-||| .+|+.|...+| ..++|
T Consensus 169 ~~~~~~~~~~~~aY~Ds-~~D~pmL~~a~-~~~~v 201 (211)
T PRK11590 169 ERKIGTPLRLYSGYSDS-KQDNPLLYFCQ-HRWRV 201 (211)
T ss_pred HHHhCCCcceEEEecCC-cccHHHHHhCC-CCEEE
Confidence 33446677889999999 59999999999 44445
No 159
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.0042 Score=51.83 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=42.5
Q ss_pred hhceeEEEeeeeeeeCC----ccC--CCHHHHHHHHHHCCC-cEEEEeCCCCCCHHHHHHHHHcCCC
Q 022757 8 LLRLSFLTVMVIIWKGD----KLI--DGVPETLDMLRSKGK-RLVFVTNNSTKSRKQYGKKFETLGL 67 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~----~~i--~~a~eal~~L~~~G~-~~~~~Tn~s~r~~~~~~~~l~~lG~ 67 (292)
+.+++|||.||||.... ... ++..+.|+.|..... -++++|+ |+..++...+.-.|+
T Consensus 17 ~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSG---R~~~~l~~~~~v~~i 80 (266)
T COG1877 17 RKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISG---RSLAELERLFGVPGI 80 (266)
T ss_pred cceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeC---CCHHHHHHhcCCCCc
Confidence 56899999999998532 222 335688888888754 5899999 999988887764444
No 160
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.38 E-value=0.0013 Score=63.36 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=39.8
Q ss_pred ceeEEEeeeee----eeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCC
Q 022757 10 RLSFLTVMVII----WKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 67 (292)
Q Consensus 10 k~i~fDiDGtL----~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~ 67 (292)
..+++=.||++ .-.+...|++.+++++|+++|+++.++|| .+........+.+|+
T Consensus 549 ~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTG---d~~~~a~~ia~~lgi 607 (741)
T PRK11033 549 TVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTG---DNPRAAAAIAGELGI 607 (741)
T ss_pred EEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCC
Confidence 45666666654 35567779999999999999999999999 444444444445555
No 161
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.29 E-value=0.00056 Score=55.09 Aligned_cols=60 Identities=17% Similarity=0.347 Sum_probs=47.7
Q ss_pred hceeEEEeeeeeeeCC---------------------------ccCCCHHHHHHHHHHCCCcEEEEeCCCCCC-HHHHHH
Q 022757 9 LRLSFLTVMVIIWKGD---------------------------KLIDGVPETLDMLRSKGKRLVFVTNNSTKS-RKQYGK 60 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~---------------------------~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~-~~~~~~ 60 (292)
.++|+.|||-|++|.. .++|||.|+++...++|..++++||..... .....+
T Consensus 79 ~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~ 158 (274)
T COG2503 79 KKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIE 158 (274)
T ss_pred CceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHH
Confidence 4599999999988632 578999999999999999999999933222 223566
Q ss_pred HHHcCCCC
Q 022757 61 KFETLGLT 68 (292)
Q Consensus 61 ~l~~lG~~ 68 (292)
-|.+.|++
T Consensus 159 nLk~~g~~ 166 (274)
T COG2503 159 NLKSEGLP 166 (274)
T ss_pred HHHHcCcc
Confidence 78888887
No 162
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0026 Score=49.57 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=25.9
Q ss_pred CcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHh
Q 022757 212 PSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQN 247 (292)
Q Consensus 212 P~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~ 247 (292)
-++.++..+.+ +.+-+.++||||+ .||+++-.-
T Consensus 159 gKa~~i~~lrk--~~~~~~~~mvGDG-atDlea~~p 191 (227)
T KOG1615|consen 159 GKAEVIALLRK--NYNYKTIVMVGDG-ATDLEAMPP 191 (227)
T ss_pred ccHHHHHHHHh--CCChheeEEecCC-ccccccCCc
Confidence 34566666655 8888999999999 799998766
No 163
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=97.22 E-value=0.0024 Score=52.75 Aligned_cols=48 Identities=17% Similarity=-0.006 Sum_probs=30.1
Q ss_pred cCCcHHHHHHHHHHcCCC---CCcEEEECCCchhhHHHHHhcCCe-----EEEEecC
Q 022757 210 GKPSTFMMDYLANKFGIQ---KSQICMVGDRLDTDILFGQNGGCK-----TLLVLSG 258 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~---~~~~~~iGD~l~~Di~~a~~aG~~-----~i~V~~G 258 (292)
+..|..+.+.+++.++.. +.-++++||+ .+|-.|.+.+.-. ++.|.++
T Consensus 163 ~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD-~tDE~~f~~~~~~~~~~~~i~V~~~ 218 (235)
T PF02358_consen 163 GVNKGSAVRRLLEELPFAGPKPDFVLYIGDD-RTDEDAFRALRELEEGGFGIKVGSV 218 (235)
T ss_dssp T--HHHHHHHHHTTS---------EEEEESS-HHHHHHHHTTTTS----EEEEES--
T ss_pred CCChHHHHHHHHHhcCccccccceeEEecCC-CCCHHHHHHHHhcccCCCCeEEEee
Confidence 444667777788888765 7789999999 6999999886653 5666554
No 164
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.19 E-value=0.024 Score=55.19 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=43.3
Q ss_pred hceeEEEeeeeeeeCCc---------cCCCHHHHHHHHHHC-CCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 9 LRLSFLTVMVIIWKGDK---------LIDGVPETLDMLRSK-GKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~---------~i~~a~eal~~L~~~-G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
-+++|||.||||..... +.|+..++|++|.+. +..|+++|| |+.+.+.+.+...++.
T Consensus 507 ~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSG---R~~~~L~~~~~~~~l~ 573 (797)
T PLN03063 507 NRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSR---SGKDILDKNFGEYNIW 573 (797)
T ss_pred CeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeC---CCHHHHHHHhCCCCCc
Confidence 46999999999984311 234466888888765 678999999 9999988888765553
No 165
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.11 E-value=0.0046 Score=47.99 Aligned_cols=88 Identities=31% Similarity=0.423 Sum_probs=59.8
Q ss_pred CccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH---------HHHHHHHHhcCCCCCC
Q 022757 24 DKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDK 94 (292)
Q Consensus 24 ~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~ 94 (292)
..+.|++.++|+.|+++|++++++|| .+...+...++.+|+.--.+.++++. ......+++.+.++.+
T Consensus 76 ~~~~~~~~~~L~~l~~~~~~~~i~Sn---~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~ 152 (176)
T PF13419_consen 76 LQPYPGVRELLERLKAKGIPLVIVSN---GSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEE 152 (176)
T ss_dssp EEESTTHHHHHHHHHHTTSEEEEEES---SEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGG
T ss_pred cchhhhhhhhhhhcccccceeEEeec---CCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcce
Confidence 35689999999999999999999999 46677778888888873345666554 2334455555665544
Q ss_pred eEEEEcCh-hHHHHHHHcCCee
Q 022757 95 KVYVVGED-GILKELELAGFQY 115 (292)
Q Consensus 95 ~~~~~g~~-~~~~~l~~~g~~~ 115 (292)
++++|.. .-.+..+..|+..
T Consensus 153 -~~~vgD~~~d~~~A~~~G~~~ 173 (176)
T PF13419_consen 153 -ILFVGDSPSDVEAAKEAGIKT 173 (176)
T ss_dssp -EEEEESSHHHHHHHHHTTSEE
T ss_pred -EEEEeCCHHHHHHHHHcCCeE
Confidence 4445443 3345556667654
No 166
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=96.93 E-value=0.038 Score=54.69 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=40.7
Q ss_pred EEeeeeeeeCCccCCCHHHHHHHHHH----CCCcEEEEeCCCCCCHHHHHHHHHcCCCCC-CCCceechHH
Q 022757 14 LTVMVIIWKGDKLIDGVPETLDMLRS----KGKRLVFVTNNSTKSRKQYGKKFETLGLTV-TEEEIFASSF 79 (292)
Q Consensus 14 fDiDGtL~~~~~~i~~a~eal~~L~~----~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~-~~~~i~~~~~ 79 (292)
.|+|.| .+ ......+.++.+++ ..+-++++|+ |+...+.+.|.+.|+++ .++.+|++.+
T Consensus 777 ~D~d~~--~~--~~~~l~~~~~~~~~~~~~~~igfv~aTG---R~l~~~~~~l~~~~lp~~~PD~lI~~vG 840 (1050)
T TIGR02468 777 VDCYDD--KD--LLQIIKNIFEAVRKERMEGSSGFILSTS---MTISEIQSFLKSGGLNPTDFDALICNSG 840 (1050)
T ss_pred eccCCC--CC--hHHHHHHHHHHHhccccCCceEEEEEcC---CCHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 699999 21 11222344555542 2366889999 99999999999999974 5677676655
No 167
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.87 E-value=0.014 Score=46.70 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=54.3
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHH---------HHHHHHHhcCCCCCCeE
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKV 96 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~---------~~~~~l~~~~~~~~~~~ 96 (292)
++|++.++|++|+++|+++.++|| .+...+...++.+|+.--.+.++++.. .....+++.+..+. .+
T Consensus 93 ~~~~~~~~L~~L~~~g~~~~i~Sn---~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~-~~ 168 (198)
T TIGR01428 93 PHPDVPAGLRALKERGYRLAILSN---GSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPD-EV 168 (198)
T ss_pred CCCCHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChh-hE
Confidence 358889999999999999999999 455666677788887533345555432 22234444555443 34
Q ss_pred EEEcChh-HHHHHHHcCCeec
Q 022757 97 YVVGEDG-ILKELELAGFQYL 116 (292)
Q Consensus 97 ~~~g~~~-~~~~l~~~g~~~~ 116 (292)
+++|... -....+..|+..+
T Consensus 169 ~~vgD~~~Di~~A~~~G~~~i 189 (198)
T TIGR01428 169 LFVASNPWDLGGAKKFGFKTA 189 (198)
T ss_pred EEEeCCHHHHHHHHHCCCcEE
Confidence 4455332 2334456676654
No 168
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=96.84 E-value=0.024 Score=46.58 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHHc---CCCCCcEEEECCCchhhHHHHHhcCC-eEEEEecCCCChhhc
Q 022757 212 PSTFMMDYLANKF---GIQKSQICMVGDRLDTDILFGQNGGC-KTLLVLSGVTSLSML 265 (292)
Q Consensus 212 P~~~~~~~~~~~l---gi~~~~~~~iGD~l~~Di~~a~~aG~-~~i~V~~G~~~~~~~ 265 (292)
=|..+++..++.. |++-+++++|||+ .||+-.+.+.+- +.++.+.|+.-..-+
T Consensus 150 CK~~il~~~~~~~~~~g~~~~rviYiGDG-~nD~Cp~~~L~~~D~v~~R~~~~l~~~i 206 (234)
T PF06888_consen 150 CKGKILERLLQEQAQRGVPYDRVIYIGDG-RNDFCPALRLRPRDVVFPRKGYPLHKLI 206 (234)
T ss_pred chHHHHHHHHHHHhhcCCCcceEEEECCC-CCCcCcccccCCCCEEecCCCChHHHHH
Confidence 3567777777763 7788999999999 699999988764 567777776543333
No 169
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.81 E-value=0.019 Score=57.50 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=39.3
Q ss_pred eeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 18 VIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 18 GtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
|.+--.+.+-+++.+++++++++|+++.++|| +++.......+++|+-
T Consensus 561 Gli~i~Dplr~~v~~aI~~l~~~Gi~v~~~TG---d~~~ta~~ia~~~gi~ 608 (997)
T TIGR01106 561 GLISMIDPPRAAVPDAVGKCRSAGIKVIMVTG---DHPITAKAIAKGVGII 608 (997)
T ss_pred EEEeccCCChHHHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCC
Confidence 44444455568899999999999999999999 8888887888888883
No 170
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=96.61 E-value=0.024 Score=45.68 Aligned_cols=89 Identities=27% Similarity=0.335 Sum_probs=55.7
Q ss_pred CccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceech---------HHHHHHHHHhcCCCCCC
Q 022757 24 DKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFAS---------SFAAAAYLKSIDFPKDK 94 (292)
Q Consensus 24 ~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~---------~~~~~~~l~~~~~~~~~ 94 (292)
..++||+.+.|++|+++|++++++|| .+...+...+..+|+.--.+.++++ .......+++.+..+ .
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn---~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~-~ 149 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATG---KSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPP-E 149 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeC---CchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCCh-h
Confidence 35679999999999999999999999 4455556677788875222334433 123334455555543 3
Q ss_pred eEEEEcChh-HHHHHHHcCCeec
Q 022757 95 KVYVVGEDG-ILKELELAGFQYL 116 (292)
Q Consensus 95 ~~~~~g~~~-~~~~l~~~g~~~~ 116 (292)
.++++|... -.+..+..|+..+
T Consensus 150 ~~l~igD~~~Di~aA~~~Gi~~i 172 (205)
T TIGR01454 150 DAVMVGDAVTDLASARAAGTATV 172 (205)
T ss_pred heEEEcCCHHHHHHHHHcCCeEE
Confidence 455555542 2345566777653
No 171
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=96.48 E-value=0.025 Score=46.07 Aligned_cols=88 Identities=25% Similarity=0.279 Sum_probs=56.7
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH---------HHHHHHHHhcCCCCCCeE
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKV 96 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~~~ 96 (292)
+.||+.++|+.|+++|++++++||+ +.......++.+|++--.+.++++. ......+++.+..+ ..+
T Consensus 95 ~~~g~~~~L~~L~~~g~~~~i~Tn~---~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~-~~~ 170 (221)
T TIGR02253 95 VYPGVRDTLMELRESGYRLGIITDG---LPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKP-EEA 170 (221)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEeCC---chHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCCh-hhE
Confidence 4578899999999999999999994 3445566778888753334454432 23334555555543 345
Q ss_pred EEEcCh--hHHHHHHHcCCeecC
Q 022757 97 YVVGED--GILKELELAGFQYLG 117 (292)
Q Consensus 97 ~~~g~~--~~~~~l~~~g~~~~~ 117 (292)
+++|-. .-....+..|+..+.
T Consensus 171 ~~igDs~~~di~~A~~aG~~~i~ 193 (221)
T TIGR02253 171 VMVGDRLDKDIKGAKNLGMKTVW 193 (221)
T ss_pred EEECCChHHHHHHHHHCCCEEEE
Confidence 666653 234556677877643
No 172
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=96.48 E-value=0.03 Score=46.69 Aligned_cols=86 Identities=20% Similarity=0.238 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHH---------HHHHHHHhcCCCCCCeEE
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKVY 97 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~---------~~~~~l~~~~~~~~~~~~ 97 (292)
+||+.+.|+.|+++|+++.++|| .+...+...++.+|+.--.+.++++.. .....+++.+..+. .++
T Consensus 110 ~pgv~e~L~~L~~~g~~l~I~Tn---~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~-~~l 185 (248)
T PLN02770 110 LNGLYKLKKWIEDRGLKRAAVTN---APRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKD-HTF 185 (248)
T ss_pred CccHHHHHHHHHHcCCeEEEEeC---CCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChh-HEE
Confidence 57888999999999999999999 566677777888887632344544432 22333444444433 344
Q ss_pred EEcChh-HHHHHHHcCCeec
Q 022757 98 VVGEDG-ILKELELAGFQYL 116 (292)
Q Consensus 98 ~~g~~~-~~~~l~~~g~~~~ 116 (292)
++|-.. -.+..+..|+..+
T Consensus 186 ~vgDs~~Di~aA~~aGi~~i 205 (248)
T PLN02770 186 VFEDSVSGIKAGVAAGMPVV 205 (248)
T ss_pred EEcCCHHHHHHHHHCCCEEE
Confidence 455432 2344556677654
No 173
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=96.45 E-value=0.029 Score=45.52 Aligned_cols=87 Identities=21% Similarity=0.201 Sum_probs=54.0
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH---------HHHHHHHHhcCCCCCCeE
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKV 96 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~~~ 96 (292)
++||+.++|+.|+++|+++.++|| .....+...++.+|+.--.+.++++. ......+++.+..+. .+
T Consensus 83 ~~~g~~~~l~~L~~~g~~~~i~S~---~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~-~~ 158 (214)
T PRK13288 83 EYETVYETLKTLKKQGYKLGIVTT---KMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPE-EA 158 (214)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHH-HE
Confidence 357889999999999999999999 45666677788888863233444321 233344444444433 34
Q ss_pred EEEcChh-HHHHHHHcCCeec
Q 022757 97 YVVGEDG-ILKELELAGFQYL 116 (292)
Q Consensus 97 ~~~g~~~-~~~~l~~~g~~~~ 116 (292)
+++|-.. -.+..+..|+..+
T Consensus 159 ~~iGDs~~Di~aa~~aG~~~i 179 (214)
T PRK13288 159 LMVGDNHHDILAGKNAGTKTA 179 (214)
T ss_pred EEECCCHHHHHHHHHCCCeEE
Confidence 4555432 2344556676653
No 174
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=96.41 E-value=0.03 Score=47.04 Aligned_cols=86 Identities=12% Similarity=0.196 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH---------HHHHHHHHhcCCCCCCeEE
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKVY 97 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~~~~ 97 (292)
+||+.++|+.|+++|++++++|| .+...+...++.+|+.--.+.++++. ......+++.+..+.+ ++
T Consensus 111 ~pg~~e~L~~L~~~g~~l~I~Tn---~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~-~l 186 (260)
T PLN03243 111 RPGSREFVQALKKHEIPIAVAST---RPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPER-CI 186 (260)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeC---cCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHH-eE
Confidence 57788899999999999999999 45566666777788753233444433 2233445555554433 44
Q ss_pred EEcC-hhHHHHHHHcCCeec
Q 022757 98 VVGE-DGILKELELAGFQYL 116 (292)
Q Consensus 98 ~~g~-~~~~~~l~~~g~~~~ 116 (292)
++|- ..-.+..+..|+..+
T Consensus 187 ~IgDs~~Di~aA~~aG~~~i 206 (260)
T PLN03243 187 VFGNSNSSVEAAHDGCMKCV 206 (260)
T ss_pred EEcCCHHHHHHHHHcCCEEE
Confidence 4443 333455666777654
No 175
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=96.40 E-value=0.024 Score=46.25 Aligned_cols=86 Identities=8% Similarity=0.107 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH---------HHHHHHHHhcCCCCCCeEE
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKVY 97 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~~~~ 97 (292)
+||+.++|+.|+++|++++++|| .+...+...++.+|++--.+.++++. ......+++.+..+. .++
T Consensus 94 ~~g~~~~l~~l~~~g~~~~i~S~---~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~-~~~ 169 (222)
T PRK10826 94 LPGVREALALCKAQGLKIGLASA---SPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPL-TCV 169 (222)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeC---CcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHH-HeE
Confidence 46788899999999999999999 44555566777788753333444432 233445555555433 344
Q ss_pred EEcCh-hHHHHHHHcCCeec
Q 022757 98 VVGED-GILKELELAGFQYL 116 (292)
Q Consensus 98 ~~g~~-~~~~~l~~~g~~~~ 116 (292)
++|.. .-.+..+..|+..+
T Consensus 170 ~igDs~~Di~aA~~aG~~~i 189 (222)
T PRK10826 170 ALEDSFNGMIAAKAARMRSI 189 (222)
T ss_pred EEcCChhhHHHHHHcCCEEE
Confidence 45432 23445566776654
No 176
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=96.37 E-value=0.046 Score=54.94 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=37.2
Q ss_pred eeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 18 VIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 18 GtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
|.+--.+.+-+++.++++.|+++|+++.++|| ..+......-+++|+.
T Consensus 639 G~~~~~Dp~r~~v~~aI~~l~~aGIkv~MiTG---D~~~tA~~iA~~~Gi~ 686 (1053)
T TIGR01523 639 GLIGIYDPPRNESAGAVEKCHQAGINVHMLTG---DFPETAKAIAQEVGII 686 (1053)
T ss_pred EEEeeecCCchhHHHHHHHHHHCCCEEEEECC---CCHHHHHHHHHHcCCC
Confidence 55544556668899999999999999999999 5555555555678873
No 177
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=96.28 E-value=0.055 Score=42.40 Aligned_cols=86 Identities=23% Similarity=0.325 Sum_probs=49.3
Q ss_pred ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH---------HHHHHHHHhcCCCCCCe
Q 022757 25 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKK 95 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~~ 95 (292)
...||+.++++.|+++|+++.++||+.... ...+.++|+.-..+.++++. ......+++.+..+. .
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~----~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~-~ 159 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH----AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPE-E 159 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH----HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcc-e
Confidence 346889999999999999999999954322 23333477753334444431 223334455555443 3
Q ss_pred EEEEcChh-HHHHHHHcCCee
Q 022757 96 VYVVGEDG-ILKELELAGFQY 115 (292)
Q Consensus 96 ~~~~g~~~-~~~~l~~~g~~~ 115 (292)
++++|... -.+..+..|+..
T Consensus 160 ~~~vgD~~~di~aA~~~G~~~ 180 (183)
T TIGR01509 160 CLFVDDSPAGIEAAKAAGMHT 180 (183)
T ss_pred EEEEcCCHHHHHHHHHcCCEE
Confidence 44454332 233445566654
No 178
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=96.27 E-value=0.046 Score=44.17 Aligned_cols=88 Identities=25% Similarity=0.289 Sum_probs=55.8
Q ss_pred ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH---------HHHHHHHHhcCCCCCCe
Q 022757 25 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKK 95 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~~ 95 (292)
.++||+.++|+.|+++|+++.++|| .+...+...++.+|+.--.+.++++. ......+++.+..+.+
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~---~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~- 160 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTN---KPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQ- 160 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhH-
Confidence 4679999999999999999999999 45555666777788742223333332 2334455555554433
Q ss_pred EEEEcChh-HHHHHHHcCCeec
Q 022757 96 VYVVGEDG-ILKELELAGFQYL 116 (292)
Q Consensus 96 ~~~~g~~~-~~~~l~~~g~~~~ 116 (292)
++++|... -.+..+..|+..+
T Consensus 161 ~~~igDs~~d~~aa~~aG~~~i 182 (213)
T TIGR01449 161 MVYVGDSRVDIQAARAAGCPSV 182 (213)
T ss_pred eEEeCCCHHHHHHHHHCCCeEE
Confidence 45555432 2445566777754
No 179
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=96.25 E-value=0.036 Score=45.40 Aligned_cols=84 Identities=18% Similarity=0.287 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH---------HHHHHHHHhcCCCCCCeEE
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKVY 97 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~~~~ 97 (292)
+||+.+.|+.|+++|+++.++|| .+.......++.+|+.--.+.++++. ......+++.+..+.+ ++
T Consensus 95 ~~g~~e~L~~Lk~~g~~~~i~Tn---~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~-~l 170 (224)
T PRK14988 95 REDTVPFLEALKASGKRRILLTN---AHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAER-TL 170 (224)
T ss_pred CCCHHHHHHHHHhCCCeEEEEeC---cCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHH-EE
Confidence 58899999999999999999999 34555556677788753234444433 2223344555654433 44
Q ss_pred EEcCh-hHHHHHHHcCCe
Q 022757 98 VVGED-GILKELELAGFQ 114 (292)
Q Consensus 98 ~~g~~-~~~~~l~~~g~~ 114 (292)
++|-. .-.+..+..|+.
T Consensus 171 ~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 171 FIDDSEPILDAAAQFGIR 188 (224)
T ss_pred EEcCCHHHHHHHHHcCCe
Confidence 45532 234455667876
No 180
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=96.20 E-value=0.0026 Score=49.13 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=34.1
Q ss_pred ceeEEEeeeeeeeCCc--------------------cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHH
Q 022757 10 RLSFLTVMVIIWKGDK--------------------LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKF 62 (292)
Q Consensus 10 k~i~fDiDGtL~~~~~--------------------~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l 62 (292)
|.++||+||||+.+.. .-|+..++|+.+.+. ..+++.|.++......+.+.+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~l 72 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDAL 72 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhh
Confidence 6799999999986432 238899999999554 999999995433333333333
No 181
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=96.15 E-value=0.19 Score=50.31 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=39.3
Q ss_pred CcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeC--CHhhHHHhHH
Q 022757 229 SQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTN--KISDFLSLKA 289 (292)
Q Consensus 229 ~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~--~l~~l~~~~~ 289 (292)
.-+.|+||+ .||..+.++|- |+|+.|....+... ..+|+++. ++..+.+++.
T Consensus 669 ~vVam~GDG-vNDapALk~Ad---VGIAmg~~gtdvAk-----~aADivL~dd~f~~I~~~i~ 722 (941)
T TIGR01517 669 EVVAVTGDG-TNDAPALKLAD---VGFSMGISGTEVAK-----EASDIILLDDNFASIVRAVK 722 (941)
T ss_pred CEEEEECCC-CchHHHHHhCC---cceecCCCccHHHH-----HhCCEEEecCCHHHHHHHHH
Confidence 369999999 59999999999 88888843333322 25788887 7888877664
No 182
>COG4996 Predicted phosphatase [General function prediction only]
Probab=96.11 E-value=0.013 Score=42.67 Aligned_cols=56 Identities=25% Similarity=0.294 Sum_probs=40.1
Q ss_pred ceeEEEeeeeeeeCC-------------------------ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHc
Q 022757 10 RLSFLTVMVIIWKGD-------------------------KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFET 64 (292)
Q Consensus 10 k~i~fDiDGtL~~~~-------------------------~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~ 64 (292)
++|.||.||||||-. +..|..+++++-+|..|+-+..+|=| .+....+.|+.
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN---~~~kA~~aLra 77 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWN---FEDKAIKALRA 77 (164)
T ss_pred CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecC---chHHHHHHHHH
Confidence 479999999999743 23455667888888888887777763 45555666777
Q ss_pred CCCC
Q 022757 65 LGLT 68 (292)
Q Consensus 65 lG~~ 68 (292)
+|+.
T Consensus 78 l~~~ 81 (164)
T COG4996 78 LDLL 81 (164)
T ss_pred hchh
Confidence 7763
No 183
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.09 E-value=0.046 Score=43.88 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=50.9
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHH---------HHHHHHHhcCCCCCCeE
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKV 96 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~---------~~~~~l~~~~~~~~~~~ 96 (292)
++||+.++|+.|+++|+++.++||.+. .+...++.+|+.--.+.++++.. .....+++.+..+ ..+
T Consensus 106 ~~~g~~~~l~~L~~~g~~~~i~Sn~~~----~~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~-~~~ 180 (203)
T TIGR02252 106 VYPDAIKLLKDLRERGLILGVISNFDS----RLRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISP-EEA 180 (203)
T ss_pred eCcCHHHHHHHHHHCCCEEEEEeCCch----hHHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCCh-hHE
Confidence 468999999999999999999999432 34566777887533344544321 2223344444433 345
Q ss_pred EEEcChh--HHHHHHHcCCee
Q 022757 97 YVVGEDG--ILKELELAGFQY 115 (292)
Q Consensus 97 ~~~g~~~--~~~~l~~~g~~~ 115 (292)
+++|... -.+..+..|+..
T Consensus 181 ~~IgD~~~~Di~~A~~aG~~~ 201 (203)
T TIGR02252 181 LHIGDSLRNDYQGARAAGWRA 201 (203)
T ss_pred EEECCCchHHHHHHHHcCCee
Confidence 5555432 234445556543
No 184
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.08 E-value=0.059 Score=47.59 Aligned_cols=87 Identities=15% Similarity=0.209 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH---------HHHHHHHHhcCCCCCCeEE
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKVY 97 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~~~~ 97 (292)
+||+.++|+.|+++|+++.++|| .+...+...++.+|+.--.+.|+++. ......+++.++.+.+ ++
T Consensus 218 ~pGa~ElL~~Lk~~GiklaIaSn---~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Pee-cl 293 (381)
T PLN02575 218 RTGSQEFVNVLMNYKIPMALVST---RPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPER-CI 293 (381)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCccc-EE
Confidence 47888999999999999999999 66777777888888753233444432 2333455555655444 44
Q ss_pred EEcC-hhHHHHHHHcCCeecC
Q 022757 98 VVGE-DGILKELELAGFQYLG 117 (292)
Q Consensus 98 ~~g~-~~~~~~l~~~g~~~~~ 117 (292)
++|- ..-.+..+..|+..+.
T Consensus 294 ~IGDS~~DIeAAk~AGm~~Ig 314 (381)
T PLN02575 294 VFGNSNQTVEAAHDARMKCVA 314 (381)
T ss_pred EEcCCHHHHHHHHHcCCEEEE
Confidence 4554 3335566777877654
No 185
>PRK11587 putative phosphatase; Provisional
Probab=96.04 E-value=0.1 Score=42.46 Aligned_cols=85 Identities=18% Similarity=0.146 Sum_probs=49.5
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHH---------HHHHHHHhcCCCCCCeE
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKV 96 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~---------~~~~~l~~~~~~~~~~~ 96 (292)
++||+.++|+.|+++|+++.++||++. ......+...|+.. .+.++++.. .....++..+..+.+ +
T Consensus 84 ~~pg~~e~L~~L~~~g~~~~ivTn~~~---~~~~~~l~~~~l~~-~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~-~ 158 (218)
T PRK11587 84 ALPGAIALLNHLNKLGIPWAIVTSGSV---PVASARHKAAGLPA-PEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQE-C 158 (218)
T ss_pred eCcCHHHHHHHHHHcCCcEEEEcCCCc---hHHHHHHHhcCCCC-ccEEEEHHHhcCCCCCcHHHHHHHHHcCCCccc-E
Confidence 478999999999999999999999653 33345566677642 234554332 122233444554433 3
Q ss_pred EEEcCh-hHHHHHHHcCCee
Q 022757 97 YVVGED-GILKELELAGFQY 115 (292)
Q Consensus 97 ~~~g~~-~~~~~l~~~g~~~ 115 (292)
+++|-. .-.+..+..|+..
T Consensus 159 l~igDs~~di~aA~~aG~~~ 178 (218)
T PRK11587 159 VVVEDAPAGVLSGLAAGCHV 178 (218)
T ss_pred EEEecchhhhHHHHHCCCEE
Confidence 334432 2234455566654
No 186
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=96.03 E-value=0.12 Score=51.15 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=38.5
Q ss_pred CcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEe--CCHhhHHHhHH
Q 022757 229 SQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT--NKISDFLSLKA 289 (292)
Q Consensus 229 ~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~--~~l~~l~~~~~ 289 (292)
+-+.|+||+ .||..+.++|- |.|.+|.++. -.. .-+|.++ +++..+.+.+.
T Consensus 638 ~vVamtGDG-vNDaPALk~AD---VGIAmg~gtd-vAk-----eaADiVLldd~f~~Iv~ai~ 690 (903)
T PRK15122 638 HTVGFLGDG-INDAPALRDAD---VGISVDSGAD-IAK-----ESADIILLEKSLMVLEEGVI 690 (903)
T ss_pred CEEEEECCC-chhHHHHHhCC---EEEEeCcccH-HHH-----HhcCEEEecCChHHHHHHHH
Confidence 469999999 59999999999 8888885542 222 2578887 67887776654
No 187
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=96.01 E-value=0.17 Score=50.12 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=36.3
Q ss_pred eeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 18 VIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 18 GtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
|.+.-.+.+-|++.+++++|++.|+++.++|| -++......-+++|+.
T Consensus 508 Gli~l~Dp~R~~~~~aI~~l~~aGI~vvmiTG---D~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 508 GFLGFLDPPKESTKEAIAALFKNGINVKVLTG---DNEIVTARICQEVGID 555 (867)
T ss_pred EEEEeeCCCchhHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCCC
Confidence 55555566668899999999999999999999 4444444445678873
No 188
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=95.98 E-value=0.074 Score=44.99 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCcee------chHHHHHHHHHhcCCCCCCeEEEEc
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIF------ASSFAAAAYLKSIDFPKDKKVYVVG 100 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~------~~~~~~~~~l~~~~~~~~~~~~~~g 100 (292)
+||+.+.|+.|+++|+++.++|| .+...+...++.+|+.-..+.++ .....+...+++.+..+. .++++|
T Consensus 144 ~pg~~e~L~~L~~~gi~laIvSn---~~~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~-~~l~IG 219 (273)
T PRK13225 144 FPGVADLLAQLRSRSLCLGILSS---NSRQNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPA-AVMYVG 219 (273)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcChh-HEEEEC
Confidence 57888999999999999999999 45666666778888752112222 222333334444444433 355555
Q ss_pred Chh-HHHHHHHcCCeec
Q 022757 101 EDG-ILKELELAGFQYL 116 (292)
Q Consensus 101 ~~~-~~~~l~~~g~~~~ 116 (292)
... -.+..+.+|+..+
T Consensus 220 Ds~~Di~aA~~AG~~~I 236 (273)
T PRK13225 220 DETRDVEAARQVGLIAV 236 (273)
T ss_pred CCHHHHHHHHHCCCeEE
Confidence 432 2344455676653
No 189
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=95.95 E-value=0.073 Score=43.30 Aligned_cols=87 Identities=22% Similarity=0.224 Sum_probs=52.5
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC--CCCCceechH---------HHHHHHHHhcCCCCCC
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT--VTEEEIFASS---------FAAAAYLKSIDFPKDK 94 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~--~~~~~i~~~~---------~~~~~~l~~~~~~~~~ 94 (292)
++||+.++|+.|+++|+++.++|| .....+...++.+|+. --.+.++++. ......+++.+..+..
T Consensus 88 l~~G~~~~L~~L~~~g~~~~ivT~---~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 164 (220)
T TIGR03351 88 ALPGAEEAFRSLRSSGIKVALTTG---FDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQ 164 (220)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeC---CchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChh
Confidence 557888999999999999999999 4555566667767764 1123344432 2233345555543123
Q ss_pred eEEEEcCh-hHHHHHHHcCCee
Q 022757 95 KVYVVGED-GILKELELAGFQY 115 (292)
Q Consensus 95 ~~~~~g~~-~~~~~l~~~g~~~ 115 (292)
.++++|-. .-.+..+..|+..
T Consensus 165 ~~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 165 SVAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred HeEEeCCCHHHHHHHHHCCCCe
Confidence 46666632 2234455667665
No 190
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=95.95 E-value=0.1 Score=51.71 Aligned_cols=51 Identities=8% Similarity=-0.014 Sum_probs=38.1
Q ss_pred CcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEe--CCHhhHHHhHH
Q 022757 229 SQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT--NKISDFLSLKA 289 (292)
Q Consensus 229 ~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~--~~l~~l~~~~~ 289 (292)
.-+.|+||+ .||..+.++|. |.|..|.++ +... .-+|.++ +++..+.+.+.
T Consensus 638 ~vVam~GDG-vNDaPALk~AD---VGIAmg~gt-dvAk-----eaADiVLldd~~~~I~~ai~ 690 (902)
T PRK10517 638 HVVGFMGDG-INDAPALRAAD---IGISVDGAV-DIAR-----EAADIILLEKSLMVLEEGVI 690 (902)
T ss_pred CEEEEECCC-cchHHHHHhCC---EEEEeCCcC-HHHH-----HhCCEEEecCChHHHHHHHH
Confidence 458999999 59999999999 888888554 2222 2578877 67777766554
No 191
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=95.94 E-value=0.27 Score=49.82 Aligned_cols=47 Identities=28% Similarity=0.305 Sum_probs=34.8
Q ss_pred eeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCC
Q 022757 18 VIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 67 (292)
Q Consensus 18 GtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~ 67 (292)
|.+--.+.+-+++.++++.|++.|+++.++||. ..+.....-++.|+
T Consensus 624 G~~gieD~lq~~v~etI~~L~~AGIkv~mlTGD---~~~TA~~IA~~~~i 670 (1057)
T TIGR01652 624 GATAIEDKLQEGVPETIELLRQAGIKIWVLTGD---KVETAINIGYSCRL 670 (1057)
T ss_pred EEEEEhhhhhhccHHHHHHHHHCCCeEEEEcCC---cHHHHHHHHHHhCC
Confidence 665556677789999999999999999999993 34443344445555
No 192
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=95.88 E-value=0.068 Score=42.05 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=35.2
Q ss_pred ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceech
Q 022757 25 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFAS 77 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~ 77 (292)
.++||+.++|+.|+++|+++.++||+ ......++.+|++--.+.++++
T Consensus 88 ~~~~g~~~~l~~l~~~g~~i~i~S~~-----~~~~~~l~~~~l~~~f~~v~~~ 135 (185)
T TIGR02009 88 EVLPGIENFLKRLKKKGIAVGLGSSS-----KNADRILAKLGLTDYFDAIVDA 135 (185)
T ss_pred CCCcCHHHHHHHHHHcCCeEEEEeCc-----hhHHHHHHHcChHHHCCEeeeh
Confidence 46789999999999999999999994 3455567778875223344443
No 193
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=95.87 E-value=0.021 Score=47.52 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=51.0
Q ss_pred hhhceeEEEeeeeeeeCCc--cC--CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHH
Q 022757 7 TLLRLSFLTVMVIIWKGDK--LI--DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF 79 (292)
Q Consensus 7 ~~~k~i~fDiDGtL~~~~~--~i--~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~ 79 (292)
+....|+||+|-||++... .| |...+.+..|++.|--+++-|- -+++.+..-+++++++-..+.|++.+.
T Consensus 120 ~~phVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSy---G~~eHV~~sl~~~~L~~~Fd~ii~~G~ 193 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSY---GNREHVRHSLKELKLEGYFDIIICGGN 193 (297)
T ss_pred CCCcEEEEECCCcccccCCccccCChHHHHHHHHHHHcCCEEEEecC---CCHHHHHHHHHHhCCccccEEEEeCCc
Confidence 3568999999999996544 34 4466999999999987777776 366777778888887633344555443
No 194
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=95.81 E-value=0.09 Score=43.87 Aligned_cols=87 Identities=18% Similarity=0.134 Sum_probs=51.1
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCC-CCceechH---------HHHHHHHHhcCCCCCCe
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVT-EEEIFASS---------FAAAAYLKSIDFPKDKK 95 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~-~~~i~~~~---------~~~~~~l~~~~~~~~~~ 95 (292)
++||+.+.|+.|+++|+++.++|| .+...+...++.+|+.-- .+.|+++. ......+++.+......
T Consensus 100 ~~pg~~e~L~~L~~~g~~l~IvT~---~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~ 176 (253)
T TIGR01422 100 PIPGVIEVIAYLRARGIKIGSTTG---YTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAA 176 (253)
T ss_pred cCCCHHHHHHHHHHCCCeEEEECC---CcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchh
Confidence 468999999999999999999999 455555556666665421 23444432 22334445555421133
Q ss_pred EEEEcChh-HHHHHHHcCCee
Q 022757 96 VYVVGEDG-ILKELELAGFQY 115 (292)
Q Consensus 96 ~~~~g~~~-~~~~l~~~g~~~ 115 (292)
++++|-.. -.+..+..|+..
T Consensus 177 ~l~IGDs~~Di~aA~~aGi~~ 197 (253)
T TIGR01422 177 CVKVGDTVPDIEEGRNAGMWT 197 (253)
T ss_pred eEEECCcHHHHHHHHHCCCeE
Confidence 55555332 234445566654
No 195
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=95.79 E-value=0.14 Score=41.70 Aligned_cols=87 Identities=23% Similarity=0.300 Sum_probs=53.3
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceech---------HHHHHHHHHhcCCCCCCeE
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFAS---------SFAAAAYLKSIDFPKDKKV 96 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~---------~~~~~~~l~~~~~~~~~~~ 96 (292)
++||+.++++.|++.|++++++|| .........++.+|+.--.+.++++ .......+++.+..+ .++
T Consensus 94 ~~~g~~~~l~~l~~~g~~~~i~S~---~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~-~~~ 169 (226)
T PRK13222 94 LYPGVKETLAALKAAGYPLAVVTN---KPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDP-EEM 169 (226)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCCh-hhe
Confidence 457788899999999999999999 4445555667777875222334332 123334455555443 345
Q ss_pred EEEcCh-hHHHHHHHcCCeec
Q 022757 97 YVVGED-GILKELELAGFQYL 116 (292)
Q Consensus 97 ~~~g~~-~~~~~l~~~g~~~~ 116 (292)
+++|.. .-.+..+..|+..+
T Consensus 170 i~igD~~~Di~~a~~~g~~~i 190 (226)
T PRK13222 170 LFVGDSRNDIQAARAAGCPSV 190 (226)
T ss_pred EEECCCHHHHHHHHHCCCcEE
Confidence 556544 23455666777543
No 196
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=95.70 E-value=0.028 Score=43.57 Aligned_cols=34 Identities=6% Similarity=0.031 Sum_probs=28.3
Q ss_pred HHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEE
Q 022757 220 LANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLL 254 (292)
Q Consensus 220 ~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~ 254 (292)
.++.+|.+++++++|||+ ..|+.++.++|+....
T Consensus 104 ~L~~l~~~~~~vIiVDD~-~~~~~~~~~NgI~i~~ 137 (162)
T TIGR02251 104 DLSLVGKDLSKVIIIDNS-PYSYSLQPDNAIPIKS 137 (162)
T ss_pred EchhcCCChhhEEEEeCC-hhhhccCccCEeecCC
Confidence 466778899999999999 6999999999965443
No 197
>PRK09449 dUMP phosphatase; Provisional
Probab=95.66 E-value=0.098 Score=42.66 Aligned_cols=88 Identities=20% Similarity=0.170 Sum_probs=55.5
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH---------HHHHHHHHhcCCCCCCeE
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKV 96 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~~~ 96 (292)
++||+.++|+.|+ +|+++.++|| .+.......++.+|+.--.+.++++. ......+++.+..+...+
T Consensus 96 ~~~g~~~~L~~L~-~~~~~~i~Tn---~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~ 171 (224)
T PRK09449 96 PLPGAVELLNALR-GKVKMGIITN---GFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRV 171 (224)
T ss_pred cCccHHHHHHHHH-hCCeEEEEeC---CcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccE
Confidence 4688999999999 6899999999 34455556678888753234444443 223344555554332456
Q ss_pred EEEcChh--HHHHHHHcCCeecC
Q 022757 97 YVVGEDG--ILKELELAGFQYLG 117 (292)
Q Consensus 97 ~~~g~~~--~~~~l~~~g~~~~~ 117 (292)
+++|... -.+..+..|+..+.
T Consensus 172 ~~vgD~~~~Di~~A~~aG~~~i~ 194 (224)
T PRK09449 172 LMVGDNLHSDILGGINAGIDTCW 194 (224)
T ss_pred EEEcCCcHHHHHHHHHCCCcEEE
Confidence 6676542 34566778877543
No 198
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=95.63 E-value=0.11 Score=40.76 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=35.3
Q ss_pred ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH
Q 022757 25 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS 78 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~ 78 (292)
.++||+.++|+.|+++|+++.++||+.. . ...++.+|++--.+.++++.
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~---~--~~~l~~~~l~~~f~~~~~~~ 135 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN---A--PTVLEKLGLIDYFDAIVDPA 135 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc---H--HHHHHhcCcHhhCcEEEehh
Confidence 4679999999999999999999998431 1 24577788763334555443
No 199
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.59 E-value=0.65 Score=37.53 Aligned_cols=40 Identities=30% Similarity=0.479 Sum_probs=30.0
Q ss_pred CccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHc-CCCC
Q 022757 24 DKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLT 68 (292)
Q Consensus 24 ~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~-lG~~ 68 (292)
-+..|||.++++.|++.=-++++.| +..++..++.+ +|++
T Consensus 82 a~lvPgA~etm~~l~~~~tp~v~ST-----SY~qy~~r~a~~ig~P 122 (315)
T COG4030 82 AKLVPGAEETMATLQERWTPVVIST-----SYTQYLRRTASMIGVP 122 (315)
T ss_pred cccCCChHHHHHHHhccCCceEEec-----cHHHHHHHHHHhcCCC
Confidence 3567999999999998866766665 47777777754 6775
No 200
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=95.48 E-value=0.1 Score=42.85 Aligned_cols=86 Identities=20% Similarity=0.202 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH---------HHHHHHHHhcCCCCCCeEE
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKVY 97 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~~~~ 97 (292)
+||+.+.++.|+++|+++.++||+ +.......+..+|+.-..+.++++. ......+++.+..+ ..++
T Consensus 97 ~pg~~~~L~~L~~~g~~l~i~Tn~---~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p-~~~l 172 (229)
T PRK13226 97 FDGVEGMLQRLECAGCVWGIVTNK---PEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAP-TDCV 172 (229)
T ss_pred CCCHHHHHHHHHHCCCeEEEECCC---CHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCCh-hhEE
Confidence 577888999999999999999994 4444455667777752222333321 12333444555544 3455
Q ss_pred EEcChh-HHHHHHHcCCeec
Q 022757 98 VVGEDG-ILKELELAGFQYL 116 (292)
Q Consensus 98 ~~g~~~-~~~~l~~~g~~~~ 116 (292)
++|-.. -.+..+..|+..+
T Consensus 173 ~IGDs~~Di~aA~~aG~~~i 192 (229)
T PRK13226 173 YVGDDERDILAARAAGMPSV 192 (229)
T ss_pred EeCCCHHHHHHHHHCCCcEE
Confidence 555432 2344566777653
No 201
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=95.40 E-value=0.23 Score=40.49 Aligned_cols=86 Identities=26% Similarity=0.349 Sum_probs=55.7
Q ss_pred ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceech---------HHHHHHHHHhcCCCCCCe
Q 022757 25 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFAS---------SFAAAAYLKSIDFPKDKK 95 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~---------~~~~~~~l~~~~~~~~~~ 95 (292)
.++||+.++|..|+++|+++.++|| ++...+...++.+|+..-.+.+++. ...+...+.+.+..+ ..
T Consensus 89 ~~~~gv~e~L~~L~~~g~~l~i~T~---k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~-~~ 164 (220)
T COG0546 89 RLFPGVKELLAALKSAGYKLGIVTN---KPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDP-EE 164 (220)
T ss_pred ccCCCHHHHHHHHHhCCCeEEEEeC---CcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCCh-hh
Confidence 3589999999999999999999999 6667777777778886444445541 122333445554432 35
Q ss_pred EEEEcChhH-HHHHHHcCCe
Q 022757 96 VYVVGEDGI-LKELELAGFQ 114 (292)
Q Consensus 96 ~~~~g~~~~-~~~l~~~g~~ 114 (292)
++++|-... ...-+.+|+.
T Consensus 165 ~l~VGDs~~Di~aA~~Ag~~ 184 (220)
T COG0546 165 ALMVGDSLNDILAAKAAGVP 184 (220)
T ss_pred eEEECCCHHHHHHHHHcCCC
Confidence 666665433 3344556644
No 202
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=95.37 E-value=0.15 Score=43.05 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH---------HHHHHHHHhcCCCCCCeEE
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKVY 97 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~~~~ 97 (292)
+||+.++|+.|+++|++++++||+ +...+...+..+|+.--.+.++++. ..+...+++.++.+. .++
T Consensus 103 ~~g~~e~L~~Lk~~g~~l~ivTn~---~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~-~~l 178 (272)
T PRK13223 103 YPGVRDTLKWLKKQGVEMALITNK---PERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPS-QSL 178 (272)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECC---cHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChh-HEE
Confidence 577889999999999999999993 4444555666677642222333321 223344555555433 344
Q ss_pred EEcCh-hHHHHHHHcCCeec
Q 022757 98 VVGED-GILKELELAGFQYL 116 (292)
Q Consensus 98 ~~g~~-~~~~~l~~~g~~~~ 116 (292)
++|.. .-.+..+..|+..+
T Consensus 179 ~IGD~~~Di~aA~~aGi~~i 198 (272)
T PRK13223 179 FVGDSRSDVLAAKAAGVQCV 198 (272)
T ss_pred EECCCHHHHHHHHHCCCeEE
Confidence 55543 23455677787643
No 203
>PLN03190 aminophospholipid translocase; Provisional
Probab=95.36 E-value=0.72 Score=47.14 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=38.1
Q ss_pred CcEEEECCCchhhHHHHHhcCCeEEEEe-cCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHhh
Q 022757 229 SQICMVGDRLDTDILFGQNGGCKTLLVL-SGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAAA 291 (292)
Q Consensus 229 ~~~~~iGD~l~~Di~~a~~aG~~~i~V~-~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~~ 291 (292)
.-++||||+ .||+.|.++|- |+|. .|....+.. .-.||.+..+..|..+|-.+
T Consensus 872 ~vtlaIGDG-aNDv~mIq~Ad---VGIGIsG~EG~qA~------~aSDfaI~~Fr~L~rLLlvH 925 (1178)
T PLN03190 872 DMTLAIGDG-ANDVSMIQMAD---VGVGISGQEGRQAV------MASDFAMGQFRFLVPLLLVH 925 (1178)
T ss_pred cEEEEECCC-cchHHHHHhcC---eeeeecCchhHHHH------HhhccchhhhHHHHHHHHHh
Confidence 459999999 69999999997 5551 232211121 25799999999999887643
No 204
>PLN02940 riboflavin kinase
Probab=95.27 E-value=0.18 Score=44.83 Aligned_cols=87 Identities=15% Similarity=0.210 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHH-cCCCCCCCCceechHH---------HHHHHHHhcCCCCCCeE
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFE-TLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKV 96 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~-~lG~~~~~~~i~~~~~---------~~~~~l~~~~~~~~~~~ 96 (292)
+||+.+.|++|+++|+++.++|| .+...+...+. ..|+.--.+.++++.. .....+++.+..+. .+
T Consensus 95 ~pGv~elL~~Lk~~g~~l~IvTn---~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~-~~ 170 (382)
T PLN02940 95 LPGANRLIKHLKSHGVPMALASN---SPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPS-NC 170 (382)
T ss_pred CcCHHHHHHHHHHCCCcEEEEeC---CcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChh-HE
Confidence 57788899999999999999999 44555555665 5676432344544432 23345555565544 34
Q ss_pred EEEcCh-hHHHHHHHcCCeecC
Q 022757 97 YVVGED-GILKELELAGFQYLG 117 (292)
Q Consensus 97 ~~~g~~-~~~~~l~~~g~~~~~ 117 (292)
+++|-. .-.+..+.+|+..+.
T Consensus 171 l~VGDs~~Di~aA~~aGi~~I~ 192 (382)
T PLN02940 171 LVIEDSLPGVMAGKAAGMEVIA 192 (382)
T ss_pred EEEeCCHHHHHHHHHcCCEEEE
Confidence 445533 234556778887654
No 205
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=95.21 E-value=0.51 Score=45.07 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=38.2
Q ss_pred ceeEEEee----eeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCC
Q 022757 10 RLSFLTVM----VIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 67 (292)
Q Consensus 10 k~i~fDiD----GtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~ 67 (292)
+.+++-.| |.+.-.+.+=|++.+++++|++.|+++.++|| -........-+++|+
T Consensus 427 r~l~va~~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTG---D~~~ta~~iA~~lGI 485 (675)
T TIGR01497 427 TPLVVCEDNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITG---DNRLTAAAIAAEAGV 485 (675)
T ss_pred eEEEEEECCEEEEEEEecccchhHHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCC
Confidence 34555444 44445566668999999999999999999999 444444444455665
No 206
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=95.17 E-value=0.058 Score=41.50 Aligned_cols=56 Identities=13% Similarity=-0.078 Sum_probs=38.1
Q ss_pred hhceeEEEeeeeeeeCCc------------------------------------cCCCHHHHHHHHHHCCCcEEEEeCCC
Q 022757 8 LLRLSFLTVMVIIWKGDK------------------------------------LIDGVPETLDMLRSKGKRLVFVTNNS 51 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~~------------------------------------~i~~a~eal~~L~~~G~~~~~~Tn~s 51 (292)
+.+.+++|+|.||+.+.. ..||+.++|+.|.+. +.+.+.||.
T Consensus 5 ~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~- 82 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMG- 82 (156)
T ss_pred CceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCC-
Confidence 356789999999986431 247888999999855 899999993
Q ss_pred CCCHHHHHHHHHcCCC
Q 022757 52 TKSRKQYGKKFETLGL 67 (292)
Q Consensus 52 ~r~~~~~~~~l~~lG~ 67 (292)
+.....+.++.++.
T Consensus 83 --~~~yA~~vl~~ldp 96 (156)
T TIGR02250 83 --TRAYAQAIAKLIDP 96 (156)
T ss_pred --cHHHHHHHHHHhCc
Confidence 33333333444554
No 207
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=95.07 E-value=0.76 Score=43.98 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=38.6
Q ss_pred CcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEe--CCHhhHHHhHH
Q 022757 229 SQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT--NKISDFLSLKA 289 (292)
Q Consensus 229 ~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~--~~l~~l~~~~~ 289 (292)
+-+.|+||+ .||-.+.++|. |.|.+|.++.-..+ -+|.+. +++..+.+.+.
T Consensus 504 ~~VaMtGDG-vNDAPALa~AD---VGIAMgsGTdvAke------AADiVLldd~ls~Iv~av~ 556 (673)
T PRK14010 504 HIVAMTGDG-TNDAPALAEAN---VGLAMNSGTMSAKE------AANLIDLDSNPTKLMEVVL 556 (673)
T ss_pred CEEEEECCC-hhhHHHHHhCC---EEEEeCCCCHHHHH------hCCEEEcCCCHHHHHHHHH
Confidence 458999999 59999999999 89999966543322 467777 56777776654
No 208
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=95.06 E-value=0.035 Score=54.52 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=43.1
Q ss_pred hceeEEEeeeeeeeCC-------------c--cCCCHHHHHHHHHHC-CCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 9 LRLSFLTVMVIIWKGD-------------K--LIDGVPETLDMLRSK-GKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~-------------~--~i~~a~eal~~L~~~-G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
-+++|||.||||.... . +.|+..++|+.|.+. +..|+++|| |+...+.+.+...++.
T Consensus 591 ~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSG---R~~~~Le~~fg~~~L~ 663 (934)
T PLN03064 591 NRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSG---SDRSVLDENFGEFDMW 663 (934)
T ss_pred ceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeC---CCHHHHHHHhCCCCce
Confidence 4689999999998421 1 224456889998765 568999999 9999998888766554
No 209
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=95.02 E-value=0.25 Score=40.40 Aligned_cols=90 Identities=22% Similarity=0.292 Sum_probs=55.6
Q ss_pred ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHH---------HHHHHhcCCCCCCe
Q 022757 25 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAA---------AAYLKSIDFPKDKK 95 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~---------~~~l~~~~~~~~~~ 95 (292)
.++||+.++++.|+++|++++++|| .++..+...|..+|+.-..+.++++.... ..-++..+..+.+.
T Consensus 86 ~~~pGv~~~l~~L~~~~i~~avaS~---s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~C 162 (221)
T COG0637 86 KPIPGVVELLEQLKARGIPLAVASS---SPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEEC 162 (221)
T ss_pred CCCccHHHHHHHHHhcCCcEEEecC---ChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHe
Confidence 5789999999999999999999999 44455556677788764445555554332 22233333444333
Q ss_pred EEEEcChhHHHHHHHcCCeecC
Q 022757 96 VYVVGEDGILKELELAGFQYLG 117 (292)
Q Consensus 96 ~~~~g~~~~~~~l~~~g~~~~~ 117 (292)
+.+-.+..-.+.....|..++.
T Consensus 163 vviEDs~~Gi~Aa~aAGm~vv~ 184 (221)
T COG0637 163 VVVEDSPAGIQAAKAAGMRVVG 184 (221)
T ss_pred EEEecchhHHHHHHHCCCEEEE
Confidence 3333333334555666766644
No 210
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=94.99 E-value=0.2 Score=39.93 Aligned_cols=39 Identities=23% Similarity=0.137 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.||+.+.|+.|+++|++++++|| .....+...++.+|++
T Consensus 82 ~~g~~e~l~~l~~~g~~~~IvS~---~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 82 RDYAEELVRWLKEKGLKTAIVSG---GIMCLAKKVAEKLNPD 120 (201)
T ss_pred CccHHHHHHHHHHCCCEEEEEeC---CcHHHHHHHHHHhCCC
Confidence 46778899999999999999999 3444455556777764
No 211
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=94.93 E-value=0.33 Score=40.88 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=49.2
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC-CCCCceechH---------HHHHHHHHhcCCCCCCe
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT-VTEEEIFASS---------FAAAAYLKSIDFPKDKK 95 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~-~~~~~i~~~~---------~~~~~~l~~~~~~~~~~ 95 (292)
++||+.+.|+.|+++|+++.++||+ +...+...++.+|+. ...+.|+++. ..+...+++.+..+...
T Consensus 102 ~~pg~~elL~~L~~~g~~l~I~T~~---~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e 178 (267)
T PRK13478 102 PIPGVLEVIAALRARGIKIGSTTGY---TREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAA 178 (267)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEcCC---cHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcc
Confidence 4689999999999999999999994 444444445544432 1112333332 23344555555432133
Q ss_pred EEEEcCh-hHHHHHHHcCCeec
Q 022757 96 VYVVGED-GILKELELAGFQYL 116 (292)
Q Consensus 96 ~~~~g~~-~~~~~l~~~g~~~~ 116 (292)
++++|-. .-.+..+..|+..+
T Consensus 179 ~l~IGDs~~Di~aA~~aG~~~i 200 (267)
T PRK13478 179 CVKVDDTVPGIEEGLNAGMWTV 200 (267)
T ss_pred eEEEcCcHHHHHHHHHCCCEEE
Confidence 5555532 22344556676543
No 212
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=94.73 E-value=0.21 Score=40.79 Aligned_cols=88 Identities=18% Similarity=0.150 Sum_probs=49.5
Q ss_pred ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcC---CCCCCCCcee-------chHHHHHHHHHhcCCCCCC
Q 022757 25 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETL---GLTVTEEEIF-------ASSFAAAAYLKSIDFPKDK 94 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~l---G~~~~~~~i~-------~~~~~~~~~l~~~~~~~~~ 94 (292)
+.+|++.++|++|+++|++++++||.+ .......+... ++.--.+.++ .........+++.+.++.+
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s---~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e 171 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGS---VPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPRE 171 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhH
Confidence 468999999999999999999999943 33222233332 2210001111 1123334455666665544
Q ss_pred eEEEEc-ChhHHHHHHHcCCeec
Q 022757 95 KVYVVG-EDGILKELELAGFQYL 116 (292)
Q Consensus 95 ~~~~~g-~~~~~~~l~~~g~~~~ 116 (292)
++++| ...-.+..+..|+..+
T Consensus 172 -~lfVgDs~~Di~AA~~AG~~ti 193 (220)
T TIGR01691 172 -ILFLSDIINELDAARKAGLHTG 193 (220)
T ss_pred -EEEEeCCHHHHHHHHHcCCEEE
Confidence 44455 3333455667787754
No 213
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=94.62 E-value=0.16 Score=41.02 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=24.9
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCC
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKS 54 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~ 54 (292)
+.|++.++|+.|+++|+++.++||++...
T Consensus 95 ~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~ 123 (211)
T TIGR02247 95 LRPSMMAAIKTLRAKGFKTACITNNFPTD 123 (211)
T ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 46889999999999999999999976443
No 214
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=94.62 E-value=1.2 Score=43.48 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=36.9
Q ss_pred eeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 18 VIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 18 GtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
|.+.-.+.+-|++.+++++|++.|+++.++|| .++......-+++|+.
T Consensus 435 Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTG---D~~~tA~~IA~~lGI~ 482 (755)
T TIGR01647 435 GLLPLFDPPRHDTKETIERARHLGVEVKMVTG---DHLAIAKETARRLGLG 482 (755)
T ss_pred EEeeccCCChhhHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCC
Confidence 55555566678999999999999999999999 4555544555678874
No 215
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=94.59 E-value=0.19 Score=40.24 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=23.6
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCC
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNS 51 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s 51 (292)
+.||+.++++.|+++|++++++||++
T Consensus 85 ~~~g~~e~L~~l~~~g~~~~i~Sn~~ 110 (199)
T PRK09456 85 LRPEVIAIMHKLREQGHRVVVLSNTN 110 (199)
T ss_pred cCHHHHHHHHHHHhCCCcEEEEcCCc
Confidence 56889999999999999999999954
No 216
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=1.6 Score=34.13 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=22.9
Q ss_pred HHHHcCCCCCcEEEECCCchhhHHHHHhcC
Q 022757 220 LANKFGIQKSQICMVGDRLDTDILFGQNGG 249 (292)
Q Consensus 220 ~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG 249 (292)
....+.-+++.+++.||+ .+|+.+|+..-
T Consensus 151 vI~~l~e~~e~~fy~GDs-vsDlsaaklsD 179 (220)
T COG4359 151 VIHELSEPNESIFYCGDS-VSDLSAAKLSD 179 (220)
T ss_pred hHHHhhcCCceEEEecCC-cccccHhhhhh
Confidence 344555567789999999 59999999876
No 217
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=94.59 E-value=0.3 Score=39.64 Aligned_cols=88 Identities=28% Similarity=0.352 Sum_probs=56.9
Q ss_pred ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHH---------HHHHHHHhc-CCCCCC
Q 022757 25 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSI-DFPKDK 94 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~---------~~~~~l~~~-~~~~~~ 94 (292)
.++||+.++|+.|+++ ++++++|| .+...+...++.+|+..-.+.++++.. .....+++. +..+.
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn---~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~- 171 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTN---GVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKE- 171 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeC---CchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCch-
Confidence 3578899999999999 99999999 345556667788888643445554432 233445555 55443
Q ss_pred eEEEEcCh--hHHHHHHHcCCeecC
Q 022757 95 KVYVVGED--GILKELELAGFQYLG 117 (292)
Q Consensus 95 ~~~~~g~~--~~~~~l~~~g~~~~~ 117 (292)
.++++|.. .-....+..|++.+.
T Consensus 172 ~~v~igD~~~~di~~A~~~G~~~i~ 196 (224)
T TIGR02254 172 EVLMIGDSLTADIKGGQNAGLDTCW 196 (224)
T ss_pred heEEECCCcHHHHHHHHHCCCcEEE
Confidence 45566653 234556677876543
No 218
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=94.49 E-value=1.7 Score=44.23 Aligned_cols=48 Identities=17% Similarity=0.132 Sum_probs=39.4
Q ss_pred eeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 18 VIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 18 GtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
|-+.-.+.+-|++.++++.|+++|+++.++|| ..+......-+++|+-
T Consensus 649 Gli~~~d~lr~~~~~~I~~l~~agi~v~miTG---D~~~TA~~iA~~~gii 696 (1054)
T TIGR01657 649 GFIVFENPLKPDTKEVIKELKRASIRTVMITG---DNPLTAVHVARECGIV 696 (1054)
T ss_pred EEEEEecCCCccHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCC
Confidence 66666666679999999999999999999999 6666666666788884
No 219
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=94.43 E-value=0.036 Score=45.96 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEecCCcccccC-CCCcccCcch-HHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCC
Q 022757 152 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLT-DAQEWAGGGS-MVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKS 229 (292)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~-~~~~~~~~~~-~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~ 229 (292)
.|+...++++.+++......++||+.+....- ..+...+... .++.+..+. .=....+..++++++++++
T Consensus 25 ~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~--------~~~~~~l~~~~~~~~~~~~ 96 (242)
T TIGR01459 25 TYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSG--------EIAVQMILESKKRFDIRNG 96 (242)
T ss_pred cCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccH--------HHHHHHHHhhhhhccCCCc
Confidence 57788888889986433457789976532100 1111122221 222222111 0012356666678889999
Q ss_pred cEEEECCCchhhHHHHHhcCC
Q 022757 230 QICMVGDRLDTDILFGQNGGC 250 (292)
Q Consensus 230 ~~~~iGD~l~~Di~~a~~aG~ 250 (292)
++++|||+ ..|++....+|.
T Consensus 97 ~~~~vGd~-~~d~~~~~~~~~ 116 (242)
T TIGR01459 97 IIYLLGHL-ENDIINLMQCYT 116 (242)
T ss_pred eEEEeCCc-ccchhhhcCCCc
Confidence 99999999 589887765553
No 220
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=94.40 E-value=0.13 Score=41.05 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=42.2
Q ss_pred hhceeEEEeeeeeeeCC--------ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 8 LLRLSFLTVMVIIWKGD--------KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~--------~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
..|.+++|+|+||++.. ..=|+..++|+.+.+ ...+++-|- .+..-+...+..+|+.
T Consensus 20 ~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL~~~~~-~feIvVwTA---a~~~ya~~~l~~l~~~ 84 (195)
T TIGR02245 20 GKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFLTSAYE-DYDIVIWSA---TSMKWIEIKMTELGVL 84 (195)
T ss_pred CCcEEEEeCCCceEcccccCCCceEEeCCCHHHHHHHHHh-CCEEEEEec---CCHHHHHHHHHHhccc
Confidence 35899999999999863 123889999999988 688999998 3344444556667653
No 221
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=94.31 E-value=0.58 Score=37.93 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=31.1
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+.||+.++++.|+++|++++++||+ ........++.+|++
T Consensus 86 ~~~g~~~~l~~l~~~g~~~~IvS~~---~~~~~~~~l~~~~i~ 125 (219)
T TIGR00338 86 LTEGAEELVKTLKEKGYKVAVISGG---FDLFAEHVKDKLGLD 125 (219)
T ss_pred cCCCHHHHHHHHHHCCCEEEEECCC---cHHHHHHHHHHcCCC
Confidence 4578889999999999999999994 344445556678875
No 222
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=94.29 E-value=0.25 Score=46.34 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=36.4
Q ss_pred CcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhH
Q 022757 229 SQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 288 (292)
Q Consensus 229 ~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~ 288 (292)
.++++|||+ .||+.|.+.|.+ .|++....++... ..+||.+.-+.++-+++
T Consensus 782 krvc~IGDG-GNDVsMIq~A~~-GiGI~gkEGkQAS-------LAADfSItqF~Hv~rLL 832 (1051)
T KOG0210|consen 782 KRVCAIGDG-GNDVSMIQAADV-GIGIVGKEGKQAS-------LAADFSITQFSHVSRLL 832 (1051)
T ss_pred ceEEEEcCC-Cccchheeeccc-ceeeecccccccc-------hhccccHHHHHHHHHHh
Confidence 689999999 899999988762 2444433444333 35799888888776655
No 223
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=94.16 E-value=0.0028 Score=49.16 Aligned_cols=15 Identities=7% Similarity=0.022 Sum_probs=11.9
Q ss_pred ceeEEEeeeeeeeCC
Q 022757 10 RLSFLTVMVIIWKGD 24 (292)
Q Consensus 10 k~i~fDiDGtL~~~~ 24 (292)
+.+++|+|+||+.+.
T Consensus 2 ~~lvlDLDeTLi~~~ 16 (162)
T TIGR02251 2 KTLVLDLDETLVHST 16 (162)
T ss_pred cEEEEcCCCCcCCCC
Confidence 468899999998753
No 224
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=94.01 E-value=0.025 Score=45.61 Aligned_cols=32 Identities=6% Similarity=0.034 Sum_probs=24.1
Q ss_pred hceeEEEeeeeeeeCCccC--CCHHHHHHHHHHC
Q 022757 9 LRLSFLTVMVIIWKGDKLI--DGVPETLDMLRSK 40 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i--~~a~eal~~L~~~ 40 (292)
+++|+||.||||+++...+ ++...+++.+++.
T Consensus 1 i~~i~fDktGTLt~~~~~v~~~~~~~~~~~~~~~ 34 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSVAPPSNEAALAIAAAL 34 (215)
T ss_dssp ESEEEEECCTTTBESHHEEESCSHHHHHHHHHHH
T ss_pred CeEEEEecCCCcccCeEEEEeccHHHHHHHHHHh
Confidence 4899999999999998877 5555555555443
No 225
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=93.88 E-value=0.15 Score=40.73 Aligned_cols=47 Identities=23% Similarity=0.181 Sum_probs=35.8
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCcee
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIF 75 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~ 75 (292)
..+++.+.|+.|+++|+++.++|| .+...+...++.+|+.--.+.++
T Consensus 107 ~~~~~~~~L~~l~~~g~~~~i~T~---~~~~~~~~~l~~~gl~~~f~~~~ 153 (197)
T TIGR01548 107 TLLTPKGLLRELHRAPKGMAVVTG---RPRKDAAKFLTTHGLEILFPVQI 153 (197)
T ss_pred cccCHHHHHHHHHHcCCcEEEECC---CCHHHHHHHHHHcCchhhCCEEE
Confidence 345568999999999999999999 56677777788899863233343
No 226
>PLN02811 hydrolase
Probab=93.47 E-value=0.77 Score=37.36 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=24.8
Q ss_pred CccCCCHHHHHHHHHHCCCcEEEEeCCC
Q 022757 24 DKLIDGVPETLDMLRSKGKRLVFVTNNS 51 (292)
Q Consensus 24 ~~~i~~a~eal~~L~~~G~~~~~~Tn~s 51 (292)
..++||+.++|+.|+++|+++.++||++
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~ 104 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSH 104 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCc
Confidence 3467999999999999999999999944
No 227
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=93.33 E-value=0.92 Score=34.40 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCC
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTK 53 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r 53 (292)
+||+.++++.|+++|+++.++||+...
T Consensus 66 ~~g~~e~l~~L~~~g~~~~i~T~~~~~ 92 (154)
T TIGR01549 66 IRGAADLLKRLKEAGIKLGIISNGSLR 92 (154)
T ss_pred ccCHHHHHHHHHHCcCeEEEEeCCchH
Confidence 478899999999999999999995433
No 228
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.00 E-value=0.87 Score=46.16 Aligned_cols=87 Identities=16% Similarity=0.261 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCC-CCCceechH---------HHHHHHHHhcCCCCCCeE
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV-TEEEIFASS---------FAAAAYLKSIDFPKDKKV 96 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~-~~~~i~~~~---------~~~~~~l~~~~~~~~~~~ 96 (292)
+||+.+.|+.|+++|+++.++|| .....+...|+.+|++. -.+.++++. ......+++.+..+.+ +
T Consensus 163 ~pG~~elL~~Lk~~G~~l~IvSn---~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e-~ 238 (1057)
T PLN02919 163 FPGALELITQCKNKGLKVAVASS---ADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSE-C 238 (1057)
T ss_pred CccHHHHHHHHHhCCCeEEEEeC---CcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCccc-E
Confidence 56777888999999999999999 55666666788888752 123444332 2233345555554444 4
Q ss_pred EEEcC-hhHHHHHHHcCCeecC
Q 022757 97 YVVGE-DGILKELELAGFQYLG 117 (292)
Q Consensus 97 ~~~g~-~~~~~~l~~~g~~~~~ 117 (292)
+++|. ..-.+..+..|+..+.
T Consensus 239 v~IgDs~~Di~AA~~aGm~~I~ 260 (1057)
T PLN02919 239 VVIEDALAGVQAARAAGMRCIA 260 (1057)
T ss_pred EEEcCCHHHHHHHHHcCCEEEE
Confidence 44443 3334556667776544
No 229
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=92.82 E-value=0.23 Score=46.07 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=33.8
Q ss_pred hceeEEEeeeeeeeCCc------------cCCCHHHHHHHHHHCCCcEEEEeC
Q 022757 9 LRLSFLTVMVIIWKGDK------------LIDGVPETLDMLRSKGKRLVFVTN 49 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~------------~i~~a~eal~~L~~~G~~~~~~Tn 49 (292)
-|.|+-|||||+..++. ...|..+...+..++|++++++|-
T Consensus 530 ~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSA 582 (738)
T KOG2116|consen 530 DKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSA 582 (738)
T ss_pred CcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEeh
Confidence 47899999999997651 235666788888999999999998
No 230
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=92.81 E-value=1.1 Score=38.29 Aligned_cols=88 Identities=18% Similarity=0.184 Sum_probs=49.1
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCC-C-CCCCceechH---------HHHHHHHHhcCCCCCC
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL-T-VTEEEIFASS---------FAAAAYLKSIDFPKDK 94 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~-~-~~~~~i~~~~---------~~~~~~l~~~~~~~~~ 94 (292)
++||+.++|+.|+++|+++.++||. +...+...+..++. . ...-.++++. ......++..+..+.
T Consensus 145 l~pGv~elL~~L~~~g~~l~IvTn~---~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~- 220 (286)
T PLN02779 145 LRPGVLRLMDEALAAGIKVAVCSTS---NEKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPS- 220 (286)
T ss_pred chhhHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChH-
Confidence 4688999999999999999999993 44444444443321 1 0111122111 223334455555443
Q ss_pred eEEEEcCh-hHHHHHHHcCCeecC
Q 022757 95 KVYVVGED-GILKELELAGFQYLG 117 (292)
Q Consensus 95 ~~~~~g~~-~~~~~l~~~g~~~~~ 117 (292)
.++++|-. .-.+..+..|+..+.
T Consensus 221 ~~l~IGDs~~Di~aA~~aG~~~i~ 244 (286)
T PLN02779 221 RCVVVEDSVIGLQAAKAAGMRCIV 244 (286)
T ss_pred HEEEEeCCHHhHHHHHHcCCEEEE
Confidence 45555533 234555677877653
No 231
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=92.79 E-value=0.15 Score=40.11 Aligned_cols=52 Identities=27% Similarity=0.280 Sum_probs=36.1
Q ss_pred eeEEEeeeeeeeCCccC-CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCC
Q 022757 11 LSFLTVMVIIWKGDKLI-DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV 69 (292)
Q Consensus 11 ~i~fDiDGtL~~~~~~i-~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~ 69 (292)
+++||+||||.-....+ |...+.++.||.. ..+.++-+ .++.+..+++|.++
T Consensus 13 l~lfdvdgtLt~~r~~~~~e~~~~l~~lr~~-v~ig~Vgg------sDl~k~~eqlG~~V 65 (252)
T KOG3189|consen 13 LCLFDVDGTLTPPRQKVTPEMLEFLQKLRKK-VTIGFVGG------SDLSKQQEQLGDNV 65 (252)
T ss_pred EEEEecCCccccccccCCHHHHHHHHHHhhh-eEEEEeec------HHHHHHHHHhchhH
Confidence 79999999999766555 5566888887765 55566666 34455566677653
No 232
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=92.44 E-value=0.77 Score=37.18 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=70.6
Q ss_pred cCHHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCc
Q 022757 151 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 230 (292)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~ 230 (292)
..|+++..++++-+. .|++++.-|.+.....+.---..+.|.+...+....+.. .--|-....|..+.+.+|.++.+
T Consensus 123 ~v~aDv~~a~e~w~~-~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfDt~--iG~K~e~~sy~~I~~~Ig~s~~e 199 (254)
T KOG2630|consen 123 HVYADVLPAIERWSG-EGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFDTT--IGLKVESQSYKKIGHLIGKSPRE 199 (254)
T ss_pred cccchhHHHHHHHhh-cCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhhcc--ccceehhHHHHHHHHHhCCChhh
Confidence 356666667666653 677777777766432211001113344444443322222 22477788899999999999999
Q ss_pred EEEECCCchhhHHHHHhcCCeEEEEec-CCCC
Q 022757 231 ICMVGDRLDTDILFGQNGGCKTLLVLS-GVTS 261 (292)
Q Consensus 231 ~~~iGD~l~~Di~~a~~aG~~~i~V~~-G~~~ 261 (292)
+++.-|- ..-..+|+.+|+.+.++.. |+..
T Consensus 200 iLfLTd~-~~Ea~aa~~aGl~a~l~~rPgna~ 230 (254)
T KOG2630|consen 200 ILFLTDV-PREAAAARKAGLQAGLVSRPGNAP 230 (254)
T ss_pred eEEeccC-hHHHHHHHhcccceeeeecCCCCC
Confidence 9999999 5999999999999888855 5543
No 233
>PLN02954 phosphoserine phosphatase
Probab=92.33 E-value=0.29 Score=39.86 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.||+.++++.|+++|++++++|| .....+...++.+|++
T Consensus 86 ~pg~~e~l~~l~~~g~~~~IvS~---~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 86 SPGIPELVKKLRARGTDVYLVSG---GFRQMIAPVAAILGIP 124 (224)
T ss_pred CccHHHHHHHHHHCCCEEEEECC---CcHHHHHHHHHHhCCC
Confidence 47888899999999999999999 3445555566778874
No 234
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=92.23 E-value=1.3 Score=37.75 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=43.7
Q ss_pred eeEEEeeeeeeeCC-------------------ccCCCHHHHHHHHHHCC-CcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 11 LSFLTVMVIIWKGD-------------------KLIDGVPETLDMLRSKG-KRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 11 ~i~fDiDGtL~~~~-------------------~~i~~a~eal~~L~~~G-~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+++.|||-|+..+. ..+||.....+.|.+.| .+++++||+.-..-..+.+++..-+|+
T Consensus 163 giISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P 240 (373)
T COG4850 163 GIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFP 240 (373)
T ss_pred eeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCC
Confidence 68999999886432 46899999999998888 899999994444445556666666665
No 235
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=92.08 E-value=0.51 Score=35.58 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=44.7
Q ss_pred hhceeEEEeeeeeee--CCccCCCHHHHHHHHHHC-C-CcEEEEeCCCCCC----HHHHHHHHH-cCCCCC
Q 022757 8 LLRLSFLTVMVIIWK--GDKLIDGVPETLDMLRSK-G-KRLVFVTNNSTKS----RKQYGKKFE-TLGLTV 69 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~--~~~~i~~a~eal~~L~~~-G-~~~~~~Tn~s~r~----~~~~~~~l~-~lG~~~ 69 (292)
.+|+++||-|.++.- +...+|.-..-++++++. | +.++++||+.+-+ ..+.++.|+ +.|+++
T Consensus 42 ~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpV 112 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPV 112 (190)
T ss_pred CceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCce
Confidence 589999999999873 455667666778888764 5 7899999977652 233455565 478764
No 236
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=91.91 E-value=1.4 Score=35.77 Aligned_cols=84 Identities=23% Similarity=0.255 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHH--------HH-HHHHhcCCCCCCeEEE
Q 022757 28 DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFA--------AA-AYLKSIDFPKDKKVYV 98 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~--------~~-~~l~~~~~~~~~~~~~ 98 (292)
|++.++++.|+.+ +++.++||+ ........++++|+.--.+.+++|... .. ..++..+..+ ..++.
T Consensus 102 ~~~~~~L~~l~~~-~~l~ilTNg---~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p-~~~l~ 176 (229)
T COG1011 102 PEALEALKELGKK-YKLGILTNG---ARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPP-EEALF 176 (229)
T ss_pred hhHHHHHHHHHhh-ccEEEEeCC---ChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCc-ceEEE
Confidence 4455677777777 789999994 445556788889976555677776632 22 3444555543 34555
Q ss_pred EcChhHH--HHHHHcCCeec
Q 022757 99 VGEDGIL--KELELAGFQYL 116 (292)
Q Consensus 99 ~g~~~~~--~~l~~~g~~~~ 116 (292)
+|..... ...+..|+..+
T Consensus 177 VgD~~~~di~gA~~~G~~~v 196 (229)
T COG1011 177 VGDSLENDILGARALGMKTV 196 (229)
T ss_pred ECCChhhhhHHHHhcCcEEE
Confidence 5543222 34566777754
No 237
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=91.45 E-value=0.47 Score=37.26 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=28.3
Q ss_pred ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 25 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.+.|++.+.++.|+++|+++.++|| .....+...++.+|+.
T Consensus 72 ~l~~g~~~ll~~l~~~g~~~~i~S~---~~~~~~~~~l~~~~l~ 112 (188)
T TIGR01489 72 PIDPGFKEFIAFIKEHGIDFIVISD---GNDFFIDPVLEGIGEK 112 (188)
T ss_pred CCCccHHHHHHHHHHcCCcEEEEeC---CcHHHHHHHHHHcCCh
Confidence 3456777788888888888888888 3444445555666664
No 238
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=91.40 E-value=2.6 Score=42.18 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=31.9
Q ss_pred CccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 24 DKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 24 ~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+.+-++++++++.|+++|+++..+|| -.+......-+++|+.
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTG---D~~~TA~aIa~~~Gi~ 587 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITG---DHVETAIAIAKECGIE 587 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECC---CCHHHHHHHHHHcCCC
Confidence 44558899999999999999999999 4444444444667764
No 239
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=91.30 E-value=2 Score=41.59 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=35.6
Q ss_pred HHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEe
Q 022757 220 LANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT 278 (292)
Q Consensus 220 ~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~ 278 (292)
.++++|- =+-+.||+. ||--+.|+|- |+|++|.+..+.-++ -+|.++
T Consensus 700 ~cQr~Ga---iVaVTGDGV-NDsPALKKAD---IGVAMGiaGSDvsKq-----AADmIL 746 (1019)
T KOG0203|consen 700 GCQRQGA---IVAVTGDGV-NDSPALKKAD---IGVAMGIAGSDVSKQ-----AADMIL 746 (1019)
T ss_pred hhhhcCc---EEEEeCCCc-CCChhhcccc---cceeeccccchHHHh-----hcceEE
Confidence 4677773 366789995 9999999999 999999888665443 466654
No 240
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=91.23 E-value=1.3 Score=34.82 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH-------------HHHHHHHHhcCCCCC
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS-------------FAAAAYLKSIDFPKD 93 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~-------------~~~~~~l~~~~~~~~ 93 (292)
.+|+.++|++|+ .++.++|| .+.......++.+|+.--.+.++++. ......+++.+..+.
T Consensus 86 ~~g~~~~L~~L~---~~~~i~Tn---~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~ 159 (184)
T TIGR01993 86 DPELRNLLLRLP---GRKIIFTN---GDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPE 159 (184)
T ss_pred CHHHHHHHHhCC---CCEEEEeC---CCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCcc
Confidence 455666666665 57899999 45566677778888753233444432 222334445555443
Q ss_pred CeEEEEcCh-hHHHHHHHcCCee
Q 022757 94 KKVYVVGED-GILKELELAGFQY 115 (292)
Q Consensus 94 ~~~~~~g~~-~~~~~l~~~g~~~ 115 (292)
+ ++++|.. .-.+..+..|+..
T Consensus 160 ~-~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 160 R-AIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred c-eEEEeCCHHHHHHHHHcCCEE
Confidence 3 4444432 2234445566554
No 241
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=91.15 E-value=3.3 Score=34.60 Aligned_cols=47 Identities=13% Similarity=0.228 Sum_probs=36.0
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHH----HHhcCCeEEEEec
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILF----GQNGGCKTLLVLS 257 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~----a~~aG~~~i~V~~ 257 (292)
|-++..++..++.+.|..|+.+++|.|+. ..+.. ++..|+.-+++..
T Consensus 160 ~~~KG~~L~~fL~~~~~~pk~IIfIDD~~-~nl~sv~~a~k~~~I~f~G~~Y 210 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKINQSPKKIIFIDDNK-ENLKSVEKACKKSGIDFIGFHY 210 (252)
T ss_pred CCccHHHHHHHHHHcCCCCCeEEEEeCCH-HHHHHHHHHHhhCCCcEEEEEE
Confidence 55566888889999999999999999994 66653 3446777776653
No 242
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=91.07 E-value=1.8 Score=34.04 Aligned_cols=86 Identities=10% Similarity=0.096 Sum_probs=49.7
Q ss_pred ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHH---------HHHHHHHhcCCCCCCe
Q 022757 25 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKK 95 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~---------~~~~~l~~~~~~~~~~ 95 (292)
.++| ..+.|..|++. +++.++|| .+...+...++.+|+.--.+.|+++.. .....+++.+..+.+
T Consensus 88 ~~~~-~~e~L~~L~~~-~~l~I~T~---~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~- 161 (188)
T PRK10725 88 EPLP-LIEVVKAWHGR-RPMAVGTG---SESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQ- 161 (188)
T ss_pred CCcc-HHHHHHHHHhC-CCEEEEcC---CchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHH-
Confidence 3456 46888888865 89999999 455666677888888533345665543 223344444443333
Q ss_pred EEEEcCh-hHHHHHHHcCCeec
Q 022757 96 VYVVGED-GILKELELAGFQYL 116 (292)
Q Consensus 96 ~~~~g~~-~~~~~l~~~g~~~~ 116 (292)
++++|.. .-.+..+..|+..+
T Consensus 162 ~l~igDs~~di~aA~~aG~~~i 183 (188)
T PRK10725 162 CVVFEDADFGIQAARAAGMDAV 183 (188)
T ss_pred eEEEeccHhhHHHHHHCCCEEE
Confidence 3344432 22344556666653
No 243
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.99 E-value=0.36 Score=43.37 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=38.9
Q ss_pred hhceeEEEeeeeeeeCC------------ccCCCH-----HHHHHHHHHCCCcEEEEeCCCCCCHHHHHHH
Q 022757 8 LLRLSFLTVMVIIWKGD------------KLIDGV-----PETLDMLRSKGKRLVFVTNNSTKSRKQYGKK 61 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~------------~~i~~a-----~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~ 61 (292)
..|+.++|+|+|||.|- ..-+|. .+.+..|+++|+-++++|-|..+...++-.+
T Consensus 221 ~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~k 291 (574)
T COG3882 221 SKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRK 291 (574)
T ss_pred ccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhh
Confidence 46899999999999542 112332 2568889999999999999776666555443
No 244
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=90.99 E-value=0.52 Score=43.14 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=34.1
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
++||+.+.|+.|+++|+++.++|| .+...+...++.+|+.
T Consensus 331 l~pG~~e~L~~Lk~~g~~l~IvS~---~~~~~~~~~l~~~~l~ 370 (459)
T PRK06698 331 LYPNVKEIFTYIKENNCSIYIASN---GLTEYLRAIVSYYDLD 370 (459)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeC---CchHHHHHHHHHCCcH
Confidence 468999999999999999999999 5666667778888875
No 245
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=89.86 E-value=2.6 Score=40.81 Aligned_cols=41 Identities=15% Similarity=0.335 Sum_probs=30.6
Q ss_pred ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 25 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.+-+++.++++.+++.|++|..+|| -........-+++|+.
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITG---D~~~TA~AI~r~iGi~ 624 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITG---DNKETAEAIAREIGIF 624 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcC---CCHHHHHHHHHHhCCC
Confidence 4557789999999999999999999 3334333444567764
No 246
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=89.82 E-value=2.6 Score=34.14 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=40.1
Q ss_pred HCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCC-ceechH---------HHHHHHHHhcCCCCCCeEEEEcCh-hHHHH
Q 022757 39 SKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEE-EIFASS---------FAAAAYLKSIDFPKDKKVYVVGED-GILKE 107 (292)
Q Consensus 39 ~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~-~i~~~~---------~~~~~~l~~~~~~~~~~~~~~g~~-~~~~~ 107 (292)
..++++.++|| .+...+...|+.+|+.--.+ .++++. ......++..+..+. .+.++|-. .-.+.
T Consensus 99 ~L~~~~~ivTn---~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~-~~l~igDs~~di~a 174 (221)
T PRK10563 99 SITVPMCVVSN---GPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVE-NCILVDDSSAGAQS 174 (221)
T ss_pred HcCCCEEEEeC---CcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHH-HeEEEeCcHhhHHH
Confidence 34689999999 34455666777788753222 344432 223334555555433 34445432 22344
Q ss_pred HHHcCCeec
Q 022757 108 LELAGFQYL 116 (292)
Q Consensus 108 l~~~g~~~~ 116 (292)
.+..|+..+
T Consensus 175 A~~aG~~~i 183 (221)
T PRK10563 175 GIAAGMEVF 183 (221)
T ss_pred HHHCCCEEE
Confidence 556777764
No 247
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=89.67 E-value=0.47 Score=41.39 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=43.2
Q ss_pred hhceeEEEeeeeeeeCCc-------------cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHH---------HHHHHHcC
Q 022757 8 LLRLSFLTVMVIIWKGDK-------------LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQ---------YGKKFETL 65 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~~-------------~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~---------~~~~l~~l 65 (292)
..|.+.||+||||++... +.+....=++.|-+.|+.++|.||.....+.. +......+
T Consensus 74 ~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl 153 (422)
T KOG2134|consen 74 GSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANL 153 (422)
T ss_pred CcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhc
Confidence 368899999999997542 22444566888999999999999976543322 23344557
Q ss_pred CCCC
Q 022757 66 GLTV 69 (292)
Q Consensus 66 G~~~ 69 (292)
|+++
T Consensus 154 ~vPi 157 (422)
T KOG2134|consen 154 GVPI 157 (422)
T ss_pred CCce
Confidence 7764
No 248
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=89.61 E-value=0.84 Score=35.44 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.|++.+.++.++++|++++++|+ .....+...++.+|++
T Consensus 75 ~~g~~~~l~~l~~~g~~~~ivS~---~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 75 RPGARELISWLKERGIDTVIVSG---GFDFFVEPVAEKLGID 113 (177)
T ss_pred CcCHHHHHHHHHHCCCEEEEECC---CcHHHHHHHHHHcCCc
Confidence 37788899999999999999999 3344455556677774
No 249
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=89.31 E-value=0.22 Score=41.80 Aligned_cols=84 Identities=11% Similarity=-0.016 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEecCCccccc--CCCCcccCcch-HHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCC
Q 022757 152 NYYKVQYGTLCIRENPGCLFIATNRDAVTHL--TDAQEWAGGGS-MVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQK 228 (292)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~--~~~~~~~~~~~-~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~ 228 (292)
.++...+.++.++......+++||.+..... ...+...|... ..+.+. ..+. ++|++..+..+.+.+++
T Consensus 119 ~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~ll---lr~~---~~~K~~rr~~I~~~y~I-- 190 (266)
T TIGR01533 119 PVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLL---LKKD---KSSKESRRQKVQKDYEI-- 190 (266)
T ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEE---eCCC---CCCcHHHHHHHHhcCCE--
Confidence 3455667777777644456788887642211 00011111110 001111 1111 46777888888887777
Q ss_pred CcEEEECCCchhhHHHHH
Q 022757 229 SQICMVGDRLDTDILFGQ 246 (292)
Q Consensus 229 ~~~~~iGD~l~~Di~~a~ 246 (292)
+++|||++ +|+....
T Consensus 191 --vl~vGD~~-~Df~~~~ 205 (266)
T TIGR01533 191 --VLLFGDNL-LDFDDFF 205 (266)
T ss_pred --EEEECCCH-HHhhhhh
Confidence 89999995 9997643
No 250
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=89.29 E-value=3.9 Score=33.10 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=26.5
Q ss_pred CCCCCcEEEECCCchhhHHHH-HhcCCeEEEEecCCCC
Q 022757 225 GIQKSQICMVGDRLDTDILFG-QNGGCKTLLVLSGVTS 261 (292)
Q Consensus 225 gi~~~~~~~iGD~l~~Di~~a-~~aG~~~i~V~~G~~~ 261 (292)
|+.-++.+++||+ .||+-.- +-.+.+.+..+.|+.-
T Consensus 179 gv~yer~iYvGDG-~nD~CP~l~Lr~~D~ampRkgfpl 215 (256)
T KOG3120|consen 179 GVRYERLIYVGDG-ANDFCPVLRLRACDVAMPRKGFPL 215 (256)
T ss_pred CCceeeEEEEcCC-CCCcCcchhcccCceecccCCCch
Confidence 7888899999999 7998654 3445566666666643
No 251
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=89.29 E-value=0.35 Score=37.45 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=33.3
Q ss_pred cCCcHHHHH--HHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecC
Q 022757 210 GKPSTFMMD--YLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSG 258 (292)
Q Consensus 210 gKP~~~~~~--~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G 258 (292)
.||+|.-|. +.++..++ -++-||| .+||.+|+.+|.+.|-++..
T Consensus 168 dk~k~~qy~Kt~~i~~~~~----~IhYGDS-D~Di~AAkeaG~RgIRilRA 213 (237)
T COG3700 168 DKPKPGQYTKTQWIQDKNI----RIHYGDS-DNDITAAKEAGARGIRILRA 213 (237)
T ss_pred CCCCcccccccHHHHhcCc----eEEecCC-chhhhHHHhcCccceeEEec
Confidence 355555444 45565665 5899999 89999999999999988653
No 252
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=89.28 E-value=0.49 Score=42.88 Aligned_cols=41 Identities=24% Similarity=0.416 Sum_probs=33.0
Q ss_pred HHHHHHHcCCCCCcEEEECCCchhhHHHHHhc-CCeEEEEec
Q 022757 217 MDYLANKFGIQKSQICMVGDRLDTDILFGQNG-GCKTLLVLS 257 (292)
Q Consensus 217 ~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~a-G~~~i~V~~ 257 (292)
+..+.+.+|..-++++.|||++..||.-.+.. |++|++|..
T Consensus 284 ~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ 325 (448)
T PF05761_consen 284 WDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIP 325 (448)
T ss_dssp HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-T
T ss_pred HHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEeh
Confidence 66677888988899999999999999998877 999999964
No 253
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=89.13 E-value=0.86 Score=36.98 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHH-HcCCCC
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKF-ETLGLT 68 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l-~~lG~~ 68 (292)
.|++.+.++.++++|..++++|+ ++..+.+.+ +.+|++
T Consensus 79 ~~ga~elv~~lk~~G~~v~iiSg----g~~~lv~~ia~~lg~d 117 (212)
T COG0560 79 TPGAEELVAALKAAGAKVVIISG----GFTFLVEPIAERLGID 117 (212)
T ss_pred CccHHHHHHHHHHCCCEEEEEcC----ChHHHHHHHHHHhCCc
Confidence 58899999999999999999999 666777766 569997
No 254
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=89.13 E-value=1.2 Score=42.80 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=41.7
Q ss_pred eeEEEeeeeee----eCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 11 LSFLTVMVIIW----KGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 11 ~i~fDiDGtL~----~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.+++-+||.+. -.+.+=|++.+++++|+++|++++++|| -+.......-+++|++
T Consensus 519 ~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTG---Dn~~~A~~iA~~lGId 577 (713)
T COG2217 519 VVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTG---DNRRTAEAIAKELGID 577 (713)
T ss_pred EEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHcChH
Confidence 58899998543 5667779999999999999999999999 3333333344578884
No 255
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=89.04 E-value=1.9 Score=31.99 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=37.9
Q ss_pred ceeEEEeeeeeee--CCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHH-cCC
Q 022757 10 RLSFLTVMVIIWK--GDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFE-TLG 66 (292)
Q Consensus 10 k~i~fDiDGtL~~--~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~-~lG 66 (292)
-..++|+||.+++ +.+.+ +..+.++.+.+.|+|++++|--+ .. .+..+++. .++
T Consensus 44 giAildL~G~~l~l~S~R~~-~~~evi~~I~~~G~PviVAtDV~-p~-P~~V~Kia~~f~ 100 (138)
T PF04312_consen 44 GIAILDLDGELLDLKSSRNM-SRSEVIEWISEYGKPVIVATDVS-PP-PETVKKIARSFN 100 (138)
T ss_pred EEEEEecCCcEEEEEeecCC-CHHHHHHHHHHcCCEEEEEecCC-CC-cHHHHHHHHHhC
Confidence 4578999999875 33333 36788999999999999999844 22 44455554 344
No 256
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=89.04 E-value=0.16 Score=41.13 Aligned_cols=32 Identities=16% Similarity=-0.037 Sum_probs=24.6
Q ss_pred HHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEE
Q 022757 222 NKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLV 255 (292)
Q Consensus 222 ~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V 255 (292)
+.++.+.+.+.+-||| .+|+.|...+|- .++|
T Consensus 169 ~~~~~~~~~~~aYsDS-~~D~pmL~~a~~-~~~V 200 (210)
T TIGR01545 169 QKIGSPLKLYSGYSDS-KQDNPLLAFCEH-RWRV 200 (210)
T ss_pred HHhCCChhheEEecCC-cccHHHHHhCCC-cEEE
Confidence 3345566788999999 599999999993 3444
No 257
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=88.80 E-value=5.1 Score=34.80 Aligned_cols=86 Identities=14% Similarity=0.191 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCC-C------Ccee------------chHHHHHHHHHh
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVT-E------EEIF------------ASSFAAAAYLKS 87 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~-~------~~i~------------~~~~~~~~~l~~ 87 (292)
.||+.+.++.|++.|+++.++||+...-.. ..++.+|++-. . +..+ .....+..++++
T Consensus 183 ~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~---~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~ 259 (322)
T PRK11133 183 MPGLTELVLKLQALGWKVAIASGGFTYFAD---YLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQE 259 (322)
T ss_pred ChhHHHHHHHHHHcCCEEEEEECCcchhHH---HHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHH
Confidence 467778899999999999999995533222 23345777410 0 1111 122334456666
Q ss_pred cCCCCCCeEEEEcChh-HHHHHHHcCCeec
Q 022757 88 IDFPKDKKVYVVGEDG-ILKELELAGFQYL 116 (292)
Q Consensus 88 ~~~~~~~~~~~~g~~~-~~~~l~~~g~~~~ 116 (292)
.+.++. .++.+|-.. -...++..|+.+.
T Consensus 260 lgi~~~-qtIaVGDg~NDl~m~~~AGlgiA 288 (322)
T PRK11133 260 YEIPLA-QTVAIGDGANDLPMIKAAGLGIA 288 (322)
T ss_pred cCCChh-hEEEEECCHHHHHHHHHCCCeEE
Confidence 665443 344455432 3444566776653
No 258
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=88.59 E-value=5.2 Score=40.60 Aligned_cols=26 Identities=46% Similarity=0.704 Sum_probs=23.2
Q ss_pred CccCCCHHHHHHHHHHCCCcEEEEeC
Q 022757 24 DKLIDGVPETLDMLRSKGKRLVFVTN 49 (292)
Q Consensus 24 ~~~i~~a~eal~~L~~~G~~~~~~Tn 49 (292)
++.-.|+.|+|+.|+++|+++-++||
T Consensus 650 DkLQdgVPetI~~L~~AGIKIWVLTG 675 (1151)
T KOG0206|consen 650 DKLQDGVPETIAKLAQAGIKIWVLTG 675 (1151)
T ss_pred chhccCchHHHHHHHHcCCEEEEEcC
Confidence 45557789999999999999999999
No 259
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=88.34 E-value=0.9 Score=40.34 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=40.7
Q ss_pred hceeEEEeeeeeeeCCcc------------CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHH---HHHHHHcCCCCCCCCc
Q 022757 9 LRLSFLTVMVIIWKGDKL------------IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQ---YGKKFETLGLTVTEEE 73 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~------------i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~---~~~~l~~lG~~~~~~~ 73 (292)
.|.|++||||||..++-+ ..|+.......-.+|+.+..+|-.+---... +..-.++-|..+....
T Consensus 375 ~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTrsylrnieQngykLpdgp 454 (580)
T COG5083 375 KKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSYLRNIEQNGYKLPDGP 454 (580)
T ss_pred CcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccCceEEEEEecccccchhhhhhHHHhhhhcCccCCCCC
Confidence 589999999999977632 1333444455566899999998832211111 2223344555544444
Q ss_pred eechH
Q 022757 74 IFASS 78 (292)
Q Consensus 74 i~~~~ 78 (292)
++.+.
T Consensus 455 viLsp 459 (580)
T COG5083 455 VILSP 459 (580)
T ss_pred Eeecc
Confidence 44443
No 260
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=88.05 E-value=1.1 Score=36.48 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=27.4
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcC
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETL 65 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~l 65 (292)
+.||+.+.++.|+++|++++++||+. ...+...++.+
T Consensus 75 l~pG~~e~l~~l~~~g~~~~IvS~~~---~~~i~~il~~~ 111 (219)
T PRK09552 75 IREGFHEFVQFVKENNIPFYVVSGGM---DFFVYPLLQGL 111 (219)
T ss_pred cCcCHHHHHHHHHHcCCeEEEECCCc---HHHHHHHHHHh
Confidence 35788889999999999999999943 33444455555
No 261
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=87.97 E-value=0.84 Score=36.41 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=30.6
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
..|++.+.++.++++|++++++|| .....+...++.+|++
T Consensus 88 ~~~~~~~~l~~l~~~g~~v~ivS~---s~~~~v~~~~~~lg~~ 127 (202)
T TIGR01490 88 LYPEARDLIRWHKAEGHTIVLVSA---SLTILVKPLARILGID 127 (202)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeC---CcHHHHHHHHHHcCCc
Confidence 467889999999999999999999 2333344455678885
No 262
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=87.96 E-value=0.6 Score=36.79 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=24.1
Q ss_pred cHHHHHHH---HHHcCCCCCcEEEECCCchhhHHHHH
Q 022757 213 STFMMDYL---ANKFGIQKSQICMVGDRLDTDILFGQ 246 (292)
Q Consensus 213 ~~~~~~~~---~~~lgi~~~~~~~iGD~l~~Di~~a~ 246 (292)
+...+..+ ... +.+..++++|||+ .+|+.|++
T Consensus 158 K~~~l~~~~~~~~~-~~~~~~~~~iGDs-~~D~~~lr 192 (192)
T PF12710_consen 158 KAEALKELYIRDEE-DIDPDRVIAIGDS-INDLPMLR 192 (192)
T ss_dssp HHHHHHHHHHHHHH-THTCCEEEEEESS-GGGHHHHH
T ss_pred HHHHHHHHHHHhhc-CCCCCeEEEEECC-HHHHHHhC
Confidence 34445555 334 7889999999999 59999986
No 263
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=87.77 E-value=1.3 Score=35.69 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=30.4
Q ss_pred ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 25 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.+.||+.++++.+++.| +++++|| -....+...++.+|++
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~---~~~~~~~~il~~lgi~ 107 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSD---TFYEFSQPLMRQLGFP 107 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeC---ChHHHHHHHHHHcCCc
Confidence 35688999999999986 9999999 3333444556788986
No 264
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=87.67 E-value=5.6 Score=32.94 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=20.3
Q ss_pred CCccEEEEeccCCcCHHHHHHHHHHHHcCCCcEEEEecCCccc
Q 022757 138 KDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVT 180 (292)
Q Consensus 138 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~ 180 (292)
+++|+|++.--....++-+.+....+ |.+++.+|.-..|
T Consensus 180 ~~aDAifisCTnLrt~~vi~~lE~~l----GkPVlsSNqat~W 218 (239)
T TIGR02990 180 PDADALFLSCTALRAATCAQRIEQAI----GKPVVTSNQATAW 218 (239)
T ss_pred CCCCEEEEeCCCchhHHHHHHHHHHH----CCCEEEHHHHHHH
Confidence 45677777643333344333333332 5667766665544
No 265
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=87.38 E-value=3.2 Score=34.19 Aligned_cols=80 Identities=23% Similarity=0.199 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH---------HHHHHHHHhcCCCCCCeEEE
Q 022757 28 DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKVYV 98 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~~~~~ 98 (292)
||+.++|+.|++. +++.++||++.. ++..|+.--.+.++++. ......+++.+..+ ..+++
T Consensus 116 ~gv~~~L~~L~~~-~~l~i~Tn~~~~--------~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~-~~~~~ 185 (238)
T PRK10748 116 QATHDTLKQLAKK-WPLVAITNGNAQ--------PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPI-GEILH 185 (238)
T ss_pred ccHHHHHHHHHcC-CCEEEEECCCch--------HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCCh-hHEEE
Confidence 6788999999875 899999996543 24455532223333332 22223345555543 34566
Q ss_pred EcCh--hHHHHHHHcCCeecC
Q 022757 99 VGED--GILKELELAGFQYLG 117 (292)
Q Consensus 99 ~g~~--~~~~~l~~~g~~~~~ 117 (292)
+|.. .-....+..|+..++
T Consensus 186 VGD~~~~Di~~A~~aG~~~i~ 206 (238)
T PRK10748 186 VGDDLTTDVAGAIRCGMQACW 206 (238)
T ss_pred EcCCcHHHHHHHHHCCCeEEE
Confidence 6654 234556677877654
No 266
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=87.20 E-value=1.5 Score=34.97 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+||+.++++.|+++ ++++++|| .........++.+|++
T Consensus 70 ~pg~~e~L~~L~~~-~~~~IvS~---~~~~~~~~~l~~~gl~ 107 (205)
T PRK13582 70 LPGAVEFLDWLRER-FQVVILSD---TFYEFAGPLMRQLGWP 107 (205)
T ss_pred CCCHHHHHHHHHhc-CCEEEEeC---CcHHHHHHHHHHcCCc
Confidence 58899999999999 99999999 4455555667788874
No 267
>PRK11590 hypothetical protein; Provisional
Probab=87.11 E-value=1.5 Score=35.45 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=28.2
Q ss_pred CCCHHHHH-HHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCC
Q 022757 27 IDGVPETL-DMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 67 (292)
Q Consensus 27 i~~a~eal-~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~ 67 (292)
+|++.+.| +.+++.|++++++|| ....-+...+..+|+
T Consensus 97 ~pga~e~L~~~l~~~G~~l~IvSa---s~~~~~~~il~~l~~ 135 (211)
T PRK11590 97 FPVVQERLTTYLLSSDADVWLITG---SPQPLVEQVYFDTPW 135 (211)
T ss_pred CccHHHHHHHHHHhCCCEEEEEeC---CcHHHHHHHHHHccc
Confidence 58888999 568889999999999 333434445567774
No 268
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=86.21 E-value=1.6 Score=35.55 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=32.8
Q ss_pred eCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHH
Q 022757 22 KGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFE 63 (292)
Q Consensus 22 ~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~ 63 (292)
......||+.+.++.|..+|+++.++|+.++.+.+....+++
T Consensus 89 ~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~ 130 (222)
T KOG2914|consen 89 MNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHE 130 (222)
T ss_pred cccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhh
Confidence 344567999999999999999999999966666665444443
No 269
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=86.14 E-value=1.4 Score=36.61 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=42.9
Q ss_pred eeEEEeeeeeeeCC----------------------ccC-CC-HH---HHHHHHHHC------CCcEEEEeCCCCCCHHH
Q 022757 11 LSFLTVMVIIWKGD----------------------KLI-DG-VP---ETLDMLRSK------GKRLVFVTNNSTKSRKQ 57 (292)
Q Consensus 11 ~i~fDiDGtL~~~~----------------------~~i-~~-a~---eal~~L~~~------G~~~~~~Tn~s~r~~~~ 57 (292)
-|.||-|+||.+.. .++ +| -. +.|.+|+++ -++++++|-.+..+.+.
T Consensus 123 RIAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~R 202 (264)
T PF06189_consen 123 RIAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHER 202 (264)
T ss_pred EEEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHH
Confidence 37999999999543 122 23 12 355556554 25689999988888888
Q ss_pred HHHHHHcCCCCCC
Q 022757 58 YGKKFETLGLTVT 70 (292)
Q Consensus 58 ~~~~l~~lG~~~~ 70 (292)
+.+-|+..|+.++
T Consensus 203 vI~TLr~Wgv~vD 215 (264)
T PF06189_consen 203 VIRTLRSWGVRVD 215 (264)
T ss_pred HHHHHHHcCCcHh
Confidence 8999999999765
No 270
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=84.59 E-value=1.5 Score=34.77 Aligned_cols=31 Identities=32% Similarity=0.494 Sum_probs=23.0
Q ss_pred eeCCccCCCHHHHHHHHHHCCCcEEEEeCCC
Q 022757 21 WKGDKLIDGVPETLDMLRSKGKRLVFVTNNS 51 (292)
Q Consensus 21 ~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s 51 (292)
+.+-.++|||.|++++|.+.|...+++|..+
T Consensus 69 f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~ 99 (191)
T PF06941_consen 69 FSNLPPIPGAVEALKKLRDKGHEIVIITARP 99 (191)
T ss_dssp TTT--B-TTHHHHHHHHHTSTTEEEEEEE-S
T ss_pred hcCCCccHHHHHHHHHHHHcCCcEEEEEecC
Confidence 4455789999999999999998888888743
No 271
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=84.28 E-value=0.69 Score=41.30 Aligned_cols=49 Identities=20% Similarity=0.178 Sum_probs=44.1
Q ss_pred eeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEE
Q 022757 207 LVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLV 255 (292)
Q Consensus 207 ~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V 255 (292)
....|-+...|..+++.=++++...+++||+-..|+.+++..|+.|.+-
T Consensus 153 ~rl~KnSg~LFk~Vlk~EnVd~~~w~H~GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 153 FRLKKNSGNLFKAVLKLENVDPKKWIHCGDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred eehhcccchHHHHHHhhcCCChhheEEecCchhhhhcCccccchhHHHH
Confidence 3447999999999999999999999999999999999999999887654
No 272
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=84.04 E-value=3.7 Score=30.02 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=39.3
Q ss_pred hceeEEEeeeeeeeC--------Cc--cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCC
Q 022757 9 LRLSFLTVMVIIWKG--------DK--LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 67 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~--------~~--~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~ 67 (292)
.+.+-+|+|++++-. .. .++.+...|..|+++|+.++++|++ ..++...+.|+.+.+
T Consensus 18 P~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt--~ap~iA~q~L~~fkv 84 (144)
T KOG4549|consen 18 PRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRT--MAPQIASQGLETFKV 84 (144)
T ss_pred eEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCC--CCHHHHHHHHHHhcc
Confidence 466777777777621 12 3477888999999999999999983 344444555555554
No 273
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=84.02 E-value=1.2 Score=32.09 Aligned_cols=64 Identities=23% Similarity=0.395 Sum_probs=44.0
Q ss_pred hceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC--CCCCceech
Q 022757 9 LRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT--VTEEEIFAS 77 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~--~~~~~i~~~ 77 (292)
++.+++|+-++-+-....+..-.+..+.++.+|+.++++. ....+.+.|...|+. +.++.++.+
T Consensus 48 ~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~-----~~~~v~~~l~~~~~~~~~~~~~~~~s 113 (117)
T PF01740_consen 48 IKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVG-----LNPDVRRILERSGLIDFIPEDQIFPS 113 (117)
T ss_dssp SSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEES-----HHHHHHHHHHHTTGHHHSCGGEEESS
T ss_pred ceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEE-----CCHHHHHHHHHcCCChhcCCCCccCC
Confidence 5899999999965333223323477888899999986654 367778889999985 334445543
No 274
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=83.77 E-value=2.3 Score=34.37 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=28.9
Q ss_pred ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCC
Q 022757 25 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLG 66 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG 66 (292)
.+.||+.++++.|+++|+++.++||+ ....+...++.++
T Consensus 70 ~l~pg~~e~l~~l~~~g~~~~IvS~~---~~~~i~~il~~~~ 108 (214)
T TIGR03333 70 EIREGFREFVAFINEHGIPFYVISGG---MDFFVYPLLEGIV 108 (214)
T ss_pred cccccHHHHHHHHHHCCCeEEEECCC---cHHHHHHHHHhhC
Confidence 45688999999999999999999994 3334444455543
No 275
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=83.56 E-value=2.8 Score=40.25 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=41.1
Q ss_pred ceeEEEee----eeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 10 RLSFLTVM----VIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 10 k~i~fDiD----GtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+.+.+-.| |.+.-.+.+-|++.+++++|++.|+++.++|| -++......-+++|++
T Consensus 426 ~~l~va~~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTG---Dn~~TA~aIA~elGId 485 (679)
T PRK01122 426 TPLVVAEDNRVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITG---DNPLTAAAIAAEAGVD 485 (679)
T ss_pred cEEEEEECCeEEEEEEEeccCchhHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCc
Confidence 34444444 55555666679999999999999999999999 4555555555679985
No 276
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=82.96 E-value=3 Score=33.71 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=27.5
Q ss_pred cCCCHHHHHH-HHHHCCCcEEEEeCCCCCCHHHHHHHH-HcCCC
Q 022757 26 LIDGVPETLD-MLRSKGKRLVFVTNNSTKSRKQYGKKF-ETLGL 67 (292)
Q Consensus 26 ~i~~a~eal~-~L~~~G~~~~~~Tn~s~r~~~~~~~~l-~~lG~ 67 (292)
..|++.+.|+ .++++|++++++|| ++..+.+.+ +..++
T Consensus 95 l~pga~e~L~~~l~~~G~~v~IvSa----s~~~~~~~ia~~~~~ 134 (210)
T TIGR01545 95 AFPLVAERLRQYLESSDADIWLITG----SPQPLVEAVYFDSNF 134 (210)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEcC----CcHHHHHHHHHhccc
Confidence 4699999996 78889999999999 444444433 34443
No 277
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=81.44 E-value=2.6 Score=33.04 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=26.7
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 30 VPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 30 a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+.+.++.++++|++++++|+ -....+...++.+|++
T Consensus 94 ~~e~i~~~~~~~~~v~IvS~---~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 94 AMELIRELKDNGIKVVIVSG---SPDEIIEPIAERLGID 129 (192)
T ss_dssp HHHHHHHHHHTTSEEEEEEE---EEHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHCCCEEEEECC---CcHHHHHHHHHHcCCC
Confidence 33999999999999999999 2334444445578885
No 278
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=81.40 E-value=4.2 Score=32.22 Aligned_cols=40 Identities=23% Similarity=0.442 Sum_probs=29.5
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHH-HcCCCCC
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKF-ETLGLTV 69 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l-~~lG~~~ 69 (292)
.-||+.+.+++|+++|..++++|| .-.++.... ..||++.
T Consensus 89 lT~Gi~eLv~~L~~~~~~v~liSG----GF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 89 LTPGIRELVSRLHARGTQVYLISG----GFRQLIEPVAEQLGIPK 129 (227)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEcC----ChHHHHHHHHHHhCCcH
Confidence 348888999999999999999999 333344443 4688863
No 279
>PHA02597 30.2 hypothetical protein; Provisional
Probab=81.02 E-value=19 Score=28.39 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=21.5
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCH
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSR 55 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~ 55 (292)
++||+.++|+.|++++ +.+++||.+....
T Consensus 75 ~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~ 103 (197)
T PHA02597 75 AYDDALDVINKLKEDY-DFVAVTALGDSID 103 (197)
T ss_pred CCCCHHHHHHHHHhcC-CEEEEeCCccchh
Confidence 4788888999998875 5778888554433
No 280
>PRK10671 copA copper exporting ATPase; Provisional
Probab=80.84 E-value=3.5 Score=40.86 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=61.0
Q ss_pred ceeEEEeeeeee----eCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHH
Q 022757 10 RLSFLTVMVIIW----KGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYL 85 (292)
Q Consensus 10 k~i~fDiDGtL~----~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l 85 (292)
..+++-.||++. -.+...|++.++++.|+++|+++.++|| .+........+.+|++--...+.... -.+.+
T Consensus 631 ~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tg---d~~~~a~~ia~~lgi~~~~~~~~p~~--K~~~i 705 (834)
T PRK10671 631 TPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHKAGYRLVMLTG---DNPTTANAIAKEAGIDEVIAGVLPDG--KAEAI 705 (834)
T ss_pred eEEEEEECCEEEEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHcCCCEEEeCCCHHH--HHHHH
Confidence 456777777643 4566779999999999999999999999 55555556667899852111111111 12223
Q ss_pred HhcCCCCCCeEEEEcChhH-HHHHHHcCCee
Q 022757 86 KSIDFPKDKKVYVVGEDGI-LKELELAGFQY 115 (292)
Q Consensus 86 ~~~~~~~~~~~~~~g~~~~-~~~l~~~g~~~ 115 (292)
++.+. .+..+..+|...- ...++..|+-+
T Consensus 706 ~~l~~-~~~~v~~vGDg~nD~~al~~Agvgi 735 (834)
T PRK10671 706 KRLQS-QGRQVAMVGDGINDAPALAQADVGI 735 (834)
T ss_pred HHHhh-cCCEEEEEeCCHHHHHHHHhCCeeE
Confidence 32211 1345766765432 34566666654
No 281
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=80.72 E-value=38 Score=32.83 Aligned_cols=113 Identities=9% Similarity=0.018 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCceeecCCcHHHHHHHHHHcCCCCCcE
Q 022757 152 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 231 (292)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~lgi~~~~~ 231 (292)
.-++..+.+..+++ .|++.+.-.-|... -...+....+.+.. ..-=.|+-=..+.+.++-.-+-+
T Consensus 446 ~R~~~~eai~~Lr~-~GI~vvMiTGDn~~-------------TA~aIA~elGId~v-~A~~~PedK~~iV~~lQ~~G~~V 510 (679)
T PRK01122 446 VKPGIKERFAELRK-MGIKTVMITGDNPL-------------TAAAIAAEAGVDDF-LAEATPEDKLALIRQEQAEGRLV 510 (679)
T ss_pred CchhHHHHHHHHHH-CCCeEEEECCCCHH-------------HHHHHHHHcCCcEE-EccCCHHHHHHHHHHHHHcCCeE
Confidence 34567777777775 56664433333311 12333333333321 12222333233334443333459
Q ss_pred EEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeC--CHhhHHHhHH
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTN--KISDFLSLKA 289 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~--~l~~l~~~~~ 289 (292)
.|+||+ .||-.+.++|. |.|.+|.++.-..+ -.|.+.- ++..+.+.+.
T Consensus 511 aMtGDG-vNDAPALa~AD---VGIAMgsGTdvAke------AADiVLldd~~s~Iv~av~ 560 (679)
T PRK01122 511 AMTGDG-TNDAPALAQAD---VGVAMNSGTQAAKE------AGNMVDLDSNPTKLIEVVE 560 (679)
T ss_pred EEECCC-cchHHHHHhCC---EeEEeCCCCHHHHH------hCCEEEeCCCHHHHHHHHH
Confidence 999999 59999999999 89999866533322 4677663 5777766554
No 282
>PRK08238 hypothetical protein; Validated
Probab=80.72 E-value=3.9 Score=37.66 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCC
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 67 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~ 67 (292)
.|++.+.+++++++|+++.++|| .......+.++.+|+
T Consensus 74 ~pga~e~L~~lk~~G~~v~LaTa---s~~~~a~~i~~~lGl 111 (479)
T PRK08238 74 NEEVLDYLRAERAAGRKLVLATA---SDERLAQAVAAHLGL 111 (479)
T ss_pred ChhHHHHHHHHHHCCCEEEEEeC---CCHHHHHHHHHHcCC
Confidence 37889999999999999999999 344444445567785
No 283
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=80.36 E-value=10 Score=32.94 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=28.5
Q ss_pred HHHcCCCCCcEEEECCCchhhHHHHH-hcCCeEEEEe
Q 022757 221 ANKFGIQKSQICMVGDRLDTDILFGQ-NGGCKTLLVL 256 (292)
Q Consensus 221 ~~~lgi~~~~~~~iGD~l~~Di~~a~-~aG~~~i~V~ 256 (292)
++.-|-.-.+++.|||.+..|+.... +.|++|-.+-
T Consensus 339 lelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII 375 (510)
T KOG2470|consen 339 LELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAII 375 (510)
T ss_pred HHHhccCCCeeEEecCcchhhhhhhHhhcccccccch
Confidence 33344455689999999999999988 8999887764
No 284
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=80.07 E-value=5.6 Score=32.79 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecC
Q 022757 213 STFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSG 258 (292)
Q Consensus 213 ~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G 258 (292)
+...|+++.+++|-+.-.-++|||+ ..--.+|+..++..+-|.+.
T Consensus 215 K~~cFe~I~~Rfg~p~~~f~~IGDG-~eEe~aAk~l~wPFw~I~~h 259 (274)
T TIGR01658 215 KLQCFKWIKERFGHPKVRFCAIGDG-WEECTAAQAMNWPFVKIDLH 259 (274)
T ss_pred hHHHHHHHHHHhCCCCceEEEeCCC-hhHHHHHHhcCCCeEEeecC
Confidence 3689999999999988999999999 68889999999999888654
No 285
>PLN02645 phosphoglycolate phosphatase
Probab=78.13 E-value=29 Score=29.92 Aligned_cols=90 Identities=13% Similarity=-0.030 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCC--CceeecCCcHHHHHHHHHHcCCCCC
Q 022757 152 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQR--EPLVVGKPSTFMMDYLANKFGIQKS 229 (292)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~gKP~~~~~~~~~~~lgi~~~ 229 (292)
.++...++++.++++....+++||........ +...+.. .+. ....+-. +.......++..+....
T Consensus 45 ~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~----------~~~~l~~-lGi~~~~~~I~t-s~~~~~~~l~~~~~~~~ 112 (311)
T PLN02645 45 LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQ----------YGKKFES-LGLNVTEEEIFS-SSFAAAAYLKSINFPKD 112 (311)
T ss_pred cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHH----------HHHHHHH-CCCCCChhhEee-hHHHHHHHHHhhccCCC
Confidence 45667788888887544457778876432211 1111111 111 1100111 12234445555565544
Q ss_pred cEEEECCCchhhHHHHHhcCCeEEE
Q 022757 230 QICMVGDRLDTDILFGQNGGCKTLL 254 (292)
Q Consensus 230 ~~~~iGD~l~~Di~~a~~aG~~~i~ 254 (292)
+.++++++ ..+.+.++.+|+.++.
T Consensus 113 ~~V~viG~-~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 113 KKVYVIGE-EGILEELELAGFQYLG 136 (311)
T ss_pred CEEEEEcC-HHHHHHHHHCCCEEec
Confidence 55777777 6899999999988654
No 286
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=76.16 E-value=5.3 Score=31.15 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=18.8
Q ss_pred HHHHHHHHCCCcEEEEeCCCCCCHHHHHHHH
Q 022757 32 ETLDMLRSKGKRLVFVTNNSTKSRKQYGKKF 62 (292)
Q Consensus 32 eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l 62 (292)
+.|..-+++|-.++|+||.+.-..+.+.+.|
T Consensus 121 qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~L 151 (237)
T COG3700 121 QLIDMHQRRGDAIYFVTGRTPGKTDTVSKTL 151 (237)
T ss_pred HHHHHHHhcCCeEEEEecCCCCcccccchhH
Confidence 3455556778889999994433333344444
No 287
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=75.54 E-value=6.5 Score=38.05 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=40.8
Q ss_pred HHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEe--CCHhhHHHhHH
Q 022757 221 ANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT--NKISDFLSLKA 289 (292)
Q Consensus 221 ~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~--~~l~~l~~~~~ 289 (292)
.+++.-.-..+.||||++ ||-.+..+|- +.|.+|.++.-..+ -+|.++ +++..+++.+.
T Consensus 592 V~~l~~~g~~VamVGDGI-NDAPALA~Ad---VGiAmG~GtDvA~e------aADvvL~~~dL~~v~~ai~ 652 (713)
T COG2217 592 VRELQAEGRKVAMVGDGI-NDAPALAAAD---VGIAMGSGTDVAIE------AADVVLMRDDLSAVPEAID 652 (713)
T ss_pred HHHHHhcCCEEEEEeCCc-hhHHHHhhcC---eeEeecCCcHHHHH------hCCEEEecCCHHHHHHHHH
Confidence 334432335799999995 9999999998 99999986643333 356554 45777776554
No 288
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=74.67 E-value=25 Score=27.68 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=24.5
Q ss_pred ccCCCHHHHHHHHHHCCCcEEEEeCCCC
Q 022757 25 KLIDGVPETLDMLRSKGKRLVFVTNNST 52 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~~~~~~Tn~s~ 52 (292)
+.+|+|.++|++.++.|+++++-|..|.
T Consensus 103 hlypDav~~ik~wk~~g~~vyiYSSGSV 130 (229)
T COG4229 103 HLYPDAVQAIKRWKALGMRVYIYSSGSV 130 (229)
T ss_pred ccCHhHHHHHHHHHHcCCcEEEEcCCCc
Confidence 5679999999999999999999887553
No 289
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=73.48 E-value=3.7 Score=24.47 Aligned_cols=34 Identities=32% Similarity=0.331 Sum_probs=22.7
Q ss_pred CccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCC
Q 022757 24 DKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLG 66 (292)
Q Consensus 24 ~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG 66 (292)
.+.++.+..++++|++.|+. .++..+.+.|+..|
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~---------is~~l~~~~L~~~g 48 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFR---------ISPKLIEEILRRAG 48 (48)
T ss_pred cCChhhHHHHHHHHHHcCcc---------cCHHHHHHHHHHcC
Confidence 34566677888888888877 36666666655443
No 290
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=69.63 E-value=11 Score=33.81 Aligned_cols=54 Identities=11% Similarity=0.053 Sum_probs=40.8
Q ss_pred EeeeeeeeCCc-c--CCCHHHHHHHHHHCCCcEEEE-eCCCCCCHHHHHHHHHcCCCC
Q 022757 15 TVMVIIWKGDK-L--IDGVPETLDMLRSKGKRLVFV-TNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 15 DiDGtL~~~~~-~--i~~a~eal~~L~~~G~~~~~~-Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+.+|+.+.|.. + .|...+.++.+++.|+++.+. ||++.....+..+++.+.|++
T Consensus 73 ~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld 130 (404)
T TIGR03278 73 RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVR 130 (404)
T ss_pred CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCC
Confidence 45677676653 3 355789999999999999985 998766666777888777765
No 291
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=69.05 E-value=17 Score=35.82 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=43.2
Q ss_pred hceeEEEeeeeee----eCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 9 LRLSFLTVMVIIW----KGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 9 ~k~i~fDiDGtL~----~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.-.+.+=++|+|. -.+..-|++..++..|+..|++++++|| -........-+++|++
T Consensus 703 ~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTG---Dn~~aA~svA~~VGi~ 763 (951)
T KOG0207|consen 703 QTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMGIKVVMLTG---DNDAAARSVAQQVGID 763 (951)
T ss_pred ceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcCceEEEEcC---CCHHHHHHHHHhhCcc
Confidence 3467888888875 3566679999999999999999999999 3444433344678875
No 292
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=68.76 E-value=14 Score=34.34 Aligned_cols=49 Identities=24% Similarity=0.353 Sum_probs=35.6
Q ss_pred eeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCC
Q 022757 16 VMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 67 (292)
Q Consensus 16 iDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~ 67 (292)
.=|.+.-.+..-+++.++++.|++.|+.+.++|+. ........-+.+|+
T Consensus 338 ~~g~i~l~d~lr~~~~~~i~~l~~~gi~~~~ltGD---~~~~a~~ia~~lgi 386 (499)
T TIGR01494 338 LLGLLGLEDPLRDDAKETISELREAGIRVIMLTGD---NVLTAKAIAKELGI 386 (499)
T ss_pred EEEEEEecCCCchhHHHHHHHHHHCCCeEEEEcCC---CHHHHHHHHHHcCc
Confidence 34666667788899999999999999999999993 33333333334564
No 293
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=68.55 E-value=70 Score=26.99 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCCCCe-EEEEcCh-----------hHHHHHHHcCCee
Q 022757 79 FAAAAYLKSIDFPKDKK-VYVVGED-----------GILKELELAGFQY 115 (292)
Q Consensus 79 ~~~~~~l~~~~~~~~~~-~~~~g~~-----------~~~~~l~~~g~~~ 115 (292)
..+.+||-+.|+ ++ +.+++.. ++.+.++++|+..
T Consensus 107 ~~a~~~Li~~Gh---~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~ 152 (279)
T PF00532_consen 107 YEATEYLIKKGH---RRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPI 152 (279)
T ss_dssp HHHHHHHHHTTC---CSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHHhccc---CCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCC
Confidence 445567777765 34 4444432 3456777777643
No 294
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=66.72 E-value=11 Score=26.55 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=36.9
Q ss_pred hhceeEEEeeeeee-eCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCC
Q 022757 8 LLRLSFLTVMVIIW-KGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV 69 (292)
Q Consensus 8 ~~k~i~fDiDGtL~-~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~ 69 (292)
..+.+++|+-|+=+ |+. .+.--.+..++++.+|..+.++-- ..++.+.|+..|++.
T Consensus 40 ~~~~vvlDls~v~~iDss-g~~~l~~~~~~~~~~g~~l~l~g~-----~~~v~~~l~~~gl~~ 96 (109)
T cd07041 40 RARGVIIDLTGVPVIDSA-VARHLLRLARALRLLGARTILTGI-----RPEVAQTLVELGIDL 96 (109)
T ss_pred CCCEEEEECCCCchhcHH-HHHHHHHHHHHHHHcCCeEEEEeC-----CHHHHHHHHHhCCCh
Confidence 35789999988854 432 222234677788888988766543 355677788888753
No 295
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=66.63 E-value=30 Score=24.92 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=51.8
Q ss_pred hhceeEEEeeeeeeeCC--ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHH
Q 022757 8 LLRLSFLTVMVIIWKGD--KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYL 85 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~--~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l 85 (292)
..|.++|=+..---||. .++-.+. +++|.+.+++-+++|| ....+++-+|+--|++...-.+......+.+.+
T Consensus 20 ~~~~~~~~lNd~~aDG~DvSWiWDvd--FE~L~~~~i~~viv~G---~Ra~DmalRLkyAGv~~~~i~v~~d~~~a~~~~ 94 (113)
T PF08353_consen 20 GPKSVLIALNDNYADGRDVSWIWDVD--FEKLADPNIKQVIVSG---TRAEDMALRLKYAGVDEEKIIVEEDLEEALDAF 94 (113)
T ss_pred CCceEEEEecCCCCCCccceEEeecC--HHHHhcCCCCEEEEEe---eeHHHHHhHeeecCcchHHeEecCCHHHHHHHH
Confidence 45777774443222222 1222343 7888888888899999 678889999999999743333444555555541
Q ss_pred HhcCCCCCCeEEEEc
Q 022757 86 KSIDFPKDKKVYVVG 100 (292)
Q Consensus 86 ~~~~~~~~~~~~~~g 100 (292)
... ..+..++|++.
T Consensus 95 ~~~-~~~~~~~yil~ 108 (113)
T PF08353_consen 95 LIK-SDPTDKVYILA 108 (113)
T ss_pred HHh-cCCCCcEEEEE
Confidence 111 12345677664
No 296
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=65.67 E-value=4 Score=30.63 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=27.3
Q ss_pred hceeEEEeeeeeeeCCccCC-CHHHHHHHHHHCCCcEEEE
Q 022757 9 LRLSFLTVMVIIWKGDKLID-GVPETLDMLRSKGKRLVFV 47 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i~-~a~eal~~L~~~G~~~~~~ 47 (292)
.+.=+-|=||||+-....+. |+....+..++.++|+.++
T Consensus 57 T~~NV~DsDgTlI~~~g~l~GGt~lT~~~a~~~~KP~l~i 96 (145)
T PF12694_consen 57 TEWNVRDSDGTLIFTRGELTGGTALTVEFARKHGKPCLHI 96 (145)
T ss_dssp HHHHHHTSSEEEEEESSS--HHHHHHHHHHHHTT--EEEE
T ss_pred HHhhhhhcCeEEEEecCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34445688999987666665 4778899999999999888
No 297
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=65.58 E-value=12 Score=26.11 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=35.5
Q ss_pred hhceeEEEeeeeee-eCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 8 LLRLSFLTVMVIIW-KGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 8 ~~k~i~fDiDGtL~-~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
..+.+++|+.++=. |+. .+.--.+..++++++|..+.++.- ...+.+.|+..|++
T Consensus 42 ~~~~vvidls~v~~iDss-gl~~L~~~~~~~~~~~~~~~l~~~-----~~~~~~~l~~~~l~ 97 (108)
T TIGR00377 42 GPRPIVLDLEDLEFMDSS-GLGVLLGRYKQVRRVGGQLVLVSV-----SPRVARLLDITGLL 97 (108)
T ss_pred CCCeEEEECCCCeEEccc-cHHHHHHHHHHHHhcCCEEEEEeC-----CHHHHHHHHHhChh
Confidence 46789999998754 432 222234667778888888665553 45566677777764
No 298
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=65.44 E-value=2.7 Score=38.84 Aligned_cols=20 Identities=0% Similarity=-0.215 Sum_probs=15.6
Q ss_pred hceeEEEeeeeeeeCCccCC
Q 022757 9 LRLSFLTVMVIIWKGDKLID 28 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i~ 28 (292)
-+.++||+||||+.++...+
T Consensus 22 ~~~~~FDfDGTLt~~~s~f~ 41 (497)
T PLN02177 22 NQTVAADLDGTLLISRSAFP 41 (497)
T ss_pred ccEEEEecCCcccCCCCccH
Confidence 35799999999998664444
No 299
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=65.41 E-value=7.4 Score=32.09 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechH
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS 78 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~ 78 (292)
..+..++++.||++|..+.++||...|. ...+..+|+.--.+.++.|.
T Consensus 115 ~~~~~~~lq~lR~~g~~l~iisN~d~r~----~~~l~~~~l~~~fD~vv~S~ 162 (237)
T KOG3085|consen 115 LDGMQELLQKLRKKGTILGIISNFDDRL----RLLLLPLGLSAYFDFVVESC 162 (237)
T ss_pred ccHHHHHHHHHHhCCeEEEEecCCcHHH----HHHhhccCHHHhhhhhhhhh
Confidence 3556699999999999999999944333 34556677642224444444
No 300
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=65.07 E-value=2.4 Score=33.62 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=33.5
Q ss_pred EEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHH
Q 022757 232 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 289 (292)
Q Consensus 232 ~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~ 289 (292)
++|.|++ .-+..+...|+.+++......+.. ..-.-+.|-.|+.++|.
T Consensus 139 vlIDD~~-~n~~~~~~~g~~~iLfd~p~Nr~~---------~~~~Rv~~W~ei~~~i~ 186 (191)
T PF06941_consen 139 VLIDDRP-HNLEQFANAGIPVILFDQPYNRDE---------SNFPRVNNWEEIEDLIL 186 (191)
T ss_dssp EEEESSS-HHHSS-SSESSEEEEE--GGGTT-----------TSEEE-STTSHHHHHH
T ss_pred EEecCCh-HHHHhccCCCceEEEEcCCCCCCC---------CCCccCCCHHHHHHHHH
Confidence 8899996 668888899999999977655422 14677888888887664
No 301
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=64.81 E-value=3.9 Score=31.55 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=34.2
Q ss_pred HHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCCh
Q 022757 220 LANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSL 262 (292)
Q Consensus 220 ~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~ 262 (292)
+.+.++++ ++|.|+..|-.+.|+.+|++.+++.+.+++.
T Consensus 129 ~vrth~id----lf~ed~~~na~~iAk~~~~~vilins~ynRk 167 (194)
T COG5663 129 AVRTHNID----LFFEDSHDNAGQIAKNAGIPVILINSPYNRK 167 (194)
T ss_pred hhHhhccC----ccccccCchHHHHHHhcCCcEEEecCccccc
Confidence 56778886 8999999999999999999999999887763
No 302
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=63.67 E-value=21 Score=33.01 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=39.2
Q ss_pred eeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 16 VMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 16 iDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+-||++-.+-.-||.+|-+..||+.|++.+.+|| -.+...+..-.+.|+|
T Consensus 438 ~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TG---DN~~TAa~IA~EAGVD 487 (681)
T COG2216 438 ILGVIYLKDIVKPGIKERFAELRKMGIKTVMITG---DNPLTAAAIAAEAGVD 487 (681)
T ss_pred EEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeC---CCHHHHHHHHHHhCch
Confidence 4578877676669999999999999999999999 4444444455678886
No 303
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=63.09 E-value=14 Score=25.80 Aligned_cols=54 Identities=11% Similarity=0.255 Sum_probs=36.1
Q ss_pred hceeEEEeeeeee-eCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 9 LRLSFLTVMVIIW-KGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 9 ~k~i~fDiDGtL~-~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.+.+++|+-|+=+ |+.. +.--.+..++++++|+.+.++. ....+.+.|+..|+.
T Consensus 39 ~~~vilDls~v~~iDssg-i~~L~~~~~~~~~~g~~l~l~~-----~~~~v~~~l~~~gl~ 93 (106)
T TIGR02886 39 IKHLILNLKNVTFMDSSG-LGVILGRYKKIKNEGGEVIVCN-----VSPAVKRLFELSGLF 93 (106)
T ss_pred CCEEEEECCCCcEecchH-HHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHHHHhCCc
Confidence 5789999998854 4322 2212366778888998876554 345667777778874
No 304
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=62.97 E-value=19 Score=30.06 Aligned_cols=68 Identities=19% Similarity=0.336 Sum_probs=50.6
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCCCCCCeEEEEcChhHHHHHHHcCCe
Q 022757 42 KRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQ 114 (292)
Q Consensus 42 ~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~g~~ 114 (292)
+.|+++|+|+..+-..+..-++..|++++ ..+|+++.....|+...+. ..++-...+-.+..-..|+.
T Consensus 37 VEVVllSRNspdTGlRv~nSI~hygL~It-R~~ft~G~~~~~Yl~af~v----~LFLSan~~DV~~Ai~~G~~ 104 (264)
T PF06189_consen 37 VEVVLLSRNSPDTGLRVFNSIRHYGLDIT-RAAFTGGESPYPYLKAFNV----DLFLSANEDDVQEAIDAGIP 104 (264)
T ss_pred eEEEEEecCCHHHHHHHHHhHHHhCCcce-eeeecCCCCHHHHHHHhCC----ceEeeCCHHHHHHHHHcCCC
Confidence 45899999988888888888888899874 4578899888999987643 36665555555555566665
No 305
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=62.67 E-value=11 Score=29.15 Aligned_cols=27 Identities=4% Similarity=-0.057 Sum_probs=19.9
Q ss_pred ceeEEEeeeeeeeCCccCCCHHHHHHH
Q 022757 10 RLSFLTVMVIIWKGDKLIDGVPETLDM 36 (292)
Q Consensus 10 k~i~fDiDGtL~~~~~~i~~a~eal~~ 36 (292)
.-+.+|||||+.+....+|....+.++
T Consensus 7 ~~~ciDIDGtit~~~t~~~~~n~~f~k 33 (194)
T COG5663 7 LRCCIDIDGTITDDPTFAPYLNPAFEK 33 (194)
T ss_pred hheeeccCCceecCcccchhccHHHHh
Confidence 457899999999988777754444443
No 306
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=62.30 E-value=1.5e+02 Score=29.63 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=32.6
Q ss_pred EEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEe--CCHhhHHH
Q 022757 231 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT--NKISDFLS 286 (292)
Q Consensus 231 ~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~--~~l~~l~~ 286 (292)
+.+-||+ .||-.+.+.|. |..++|....+-.+ +..|.++ |+++-+.+
T Consensus 741 VAVTGDG-TNDaPALkeAD---VGlAMGIaGTeVAK-----EaSDIIi~DDNFssIVk 789 (1034)
T KOG0204|consen 741 VAVTGDG-TNDAPALKEAD---VGLAMGIAGTEVAK-----EASDIIILDDNFSSIVK 789 (1034)
T ss_pred EEEecCC-CCCchhhhhcc---cchhccccchhhhh-----hhCCeEEEcCchHHHHH
Confidence 4455999 69999999999 88888987766644 2466665 33444433
No 307
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=60.96 E-value=31 Score=30.10 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=48.8
Q ss_pred EEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCC
Q 022757 13 FLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDF 90 (292)
Q Consensus 13 ~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~ 90 (292)
++|+.||=.|+.+.++=..-+.--+...|++|....|.+.-+.....+.|+.+|+++. .+...+.+.+++.++
T Consensus 71 ~iD~~gtggdg~~t~nist~~a~vlA~~G~~V~kHG~r~~~s~~Gs~d~le~LGi~~~-----~s~~~~~~~l~~~g~ 143 (330)
T TIGR01245 71 LVDIVGTGGDGANTINISTASAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLD-----LGPEKVARSLEETGI 143 (330)
T ss_pred cccccCCCCCCCCccccHHHHHHHHHhCCCEEEEeCCCCCCCCccHHHHHHHcCCCCC-----CCHHHHHHHHHHhCc
Confidence 5788888777776554333334456788999999888665545556788999999753 233455666766543
No 308
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=60.43 E-value=7.2 Score=24.63 Aligned_cols=24 Identities=50% Similarity=0.616 Sum_probs=14.8
Q ss_pred HHHHHHcCCCCCcEEEECCCchhhHHHHH
Q 022757 218 DYLANKFGIQKSQICMVGDRLDTDILFGQ 246 (292)
Q Consensus 218 ~~~~~~lgi~~~~~~~iGD~l~~Di~~a~ 246 (292)
.++++++|+ .+.+||. ..||++..
T Consensus 8 qQLLK~fG~----~IY~gdr-~~DielM~ 31 (62)
T PF06014_consen 8 QQLLKKFGI----IIYVGDR-LWDIELME 31 (62)
T ss_dssp HHHHHTTS---------S-H-HHHHHHHH
T ss_pred HHHHHHCCE----EEEeCCh-HHHHHHHH
Confidence 467888998 8999999 59999875
No 309
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=60.09 E-value=18 Score=24.62 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=34.4
Q ss_pred hceeEEEeeeeee-eCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 9 LRLSFLTVMVIIW-KGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 9 ~k~i~fDiDGtL~-~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.+.+++|+.++=. |+. .+.--.+..+.++++|..+.+..- ..++.+.++..|+.
T Consensus 38 ~~~viid~~~v~~iDs~-g~~~L~~l~~~~~~~g~~v~i~~~-----~~~~~~~l~~~gl~ 92 (99)
T cd07043 38 PRRLVLDLSGVTFIDSS-GLGVLLGAYKRARAAGGRLVLVNV-----SPAVRRVLELTGLD 92 (99)
T ss_pred CCEEEEECCCCCEEcch-hHHHHHHHHHHHHHcCCeEEEEcC-----CHHHHHHHHHhCcc
Confidence 4788899888743 432 222234677778888888654432 35667777777763
No 310
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=59.74 E-value=15 Score=25.47 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=36.8
Q ss_pred hceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 9 LRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.+.+++|+-|+=+-....+---.+..+.++++|..+.++.- ..++.+.|+..|++
T Consensus 39 ~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl~ 93 (100)
T cd06844 39 GKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGI-----SPAVRITLTESGLD 93 (100)
T ss_pred CCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECC-----CHHHHHHHHHhCch
Confidence 68899999988653222222234778888889988766543 45667777878874
No 311
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=56.67 E-value=29 Score=29.20 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=47.7
Q ss_pred hceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCC
Q 022757 9 LRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVT 70 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~ 70 (292)
.|.+++=+.|.....+.......+-+..|+..|++.+++-| ...++.+.|+++|++..
T Consensus 2 ~k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHG----ggp~I~~~l~~~gie~~ 59 (265)
T COG0548 2 GKTIVIKLGGSAMEDENLLEAFASDIALLKSVGIRPVVVHG----GGPQIDEMLAKLGIEPE 59 (265)
T ss_pred CceEEEEECceeecCchHHHHHHHHHHHHHHCCCcEEEEeC----CchHHHHHHHHcCCCCe
Confidence 46788888999988777666667888999999999899998 56778889999999743
No 312
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=55.40 E-value=27 Score=28.82 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=37.1
Q ss_pred CccCCCHHHHHHHH--HHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceech
Q 022757 24 DKLIDGVPETLDML--RSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFAS 77 (292)
Q Consensus 24 ~~~i~~a~eal~~L--~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~ 77 (292)
-...|+..++++.+ ...|..++++|. -...-+...|+..|+.-..++|+|.
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSD---aNs~fI~~iL~~~gl~~~f~~I~TN 122 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISD---ANSFFIETILEHHGLRDCFSEIFTN 122 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeC---CcHhHHHHHHHhCCCccccceEEeC
Confidence 34457888999999 457899999999 4556667778888886444556654
No 313
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=55.00 E-value=28 Score=28.59 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=39.7
Q ss_pred EEEeeeeeeeCCc-cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 13 FLTVMVIIWKGDK-LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 13 ~fDiDGtL~~~~~-~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
-||-|=+++-|.+ ..||-..|=+.|.+.|+|++++|...+... .+.|++.||-
T Consensus 58 ~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~---~d~l~~~g~G 111 (277)
T PRK00994 58 EWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKV---KDAMEEQGLG 111 (277)
T ss_pred hhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccch---HHHHHhcCCc
Confidence 4677777776654 569988889999999999999999554433 3677776663
No 314
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=54.97 E-value=41 Score=29.54 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=35.2
Q ss_pred eeeCCccC--CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 20 IWKGDKLI--DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 20 L~~~~~~i--~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.+.|..+. ++..+.++.+++.|+.+.+.||.+..+. +..+.|.+.|++
T Consensus 58 ~~~GGEPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~-e~~~~L~~~g~~ 107 (358)
T TIGR02109 58 HFSGGEPLARPDLVELVAHARRLGLYTNLITSGVGLTE-ARLDALADAGLD 107 (358)
T ss_pred EEeCccccccccHHHHHHHHHHcCCeEEEEeCCccCCH-HHHHHHHhCCCC
Confidence 34444432 6778999999999999999999776654 456677777764
No 315
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=54.59 E-value=40 Score=31.66 Aligned_cols=73 Identities=15% Similarity=0.119 Sum_probs=51.2
Q ss_pred EEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCC
Q 022757 13 FLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDF 90 (292)
Q Consensus 13 ~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~ 90 (292)
.+|+.||=.|+.+.++=..-+.--+...|++|+...|.+.-+.....+.|+.+|+++. .+...+.+.+++.++
T Consensus 268 ~~D~~gtggdg~~t~nist~~a~v~A~~G~~V~kHG~r~~ss~~Gsadvle~lGv~~~-----~~~~~~~~~l~~~g~ 340 (534)
T PRK14607 268 TVDTCGTGGDGFGTFNISTTSAFVVAAAGVPVAKHGNRAVSSKSGSADVLEALGVKLE-----MTPEEAASVLRETGF 340 (534)
T ss_pred ceEEccCCCCCCCccccHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHHcCCCCC-----CCHHHHHHHHHHhCc
Confidence 6899999988887654333334446788999999998776666667788999999753 233455566666553
No 316
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.84 E-value=1.2e+02 Score=24.66 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=18.0
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 31 PETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 31 ~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.|..+++++.+ .+-.+|- .-.+.+.|+.+|..
T Consensus 88 ~ei~~~ie~~~-~v~vvTt-----s~Avv~aL~al~a~ 119 (238)
T COG3473 88 KEIAQRIEEAK-GVPVVTT-----STAVVEALNALGAQ 119 (238)
T ss_pred HHHHHHHHhcc-CCceeec-----hHHHHHHHHhhCcc
Confidence 45556666554 4434443 34456677777763
No 317
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=53.69 E-value=21 Score=25.58 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=37.6
Q ss_pred hceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 9 LRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.+.+++|+-||=+-+...+---..+++.++..|..++++.. .+++++.+...|++
T Consensus 44 ~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i-----~p~v~~~~~~~gl~ 98 (117)
T COG1366 44 ARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGI-----QPEVARTLELTGLD 98 (117)
T ss_pred CcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeC-----CHHHHHHHHHhCch
Confidence 34599999998664332222134678889999977766654 46677888888886
No 318
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=53.55 E-value=9.5 Score=33.81 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=44.8
Q ss_pred eeecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHH-HhcCCeEEEEecCCCC
Q 022757 207 LVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFG-QNGGCKTLLVLSGVTS 261 (292)
Q Consensus 207 ~~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a-~~aG~~~i~V~~G~~~ 261 (292)
...|++++.....+.+.+++.-.+++.|||+...||.-- ++-|+++++|..-...
T Consensus 283 e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~peL~~ 338 (424)
T KOG2469|consen 283 EQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPELER 338 (424)
T ss_pred hhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEehhhhh
Confidence 445788888888999999998899999999998998654 6689999999754433
No 319
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=53.39 E-value=17 Score=28.04 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=20.4
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
++||+.++|+ ++.++|| .+.......++.+|+.
T Consensus 91 ~~~g~~~~L~-------~~~i~Tn---~~~~~~~~~l~~~~l~ 123 (175)
T TIGR01493 91 PWPDSAAALA-------RVAILSN---ASHWAFDQFAQQAGLP 123 (175)
T ss_pred CCCchHHHHH-------HHhhhhC---CCHHHHHHHHHHCCCH
Confidence 3455555554 3678899 4455555667777774
No 320
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=52.94 E-value=22 Score=25.68 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHH
Q 022757 28 DGVPETLDMLRSKGKRLVFVTNNSTKSRKQY 58 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~ 58 (292)
+...++++.++++|.+++.+|++...+..++
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ 91 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNPNSTLAKL 91 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCchhhh
Confidence 4467899999999999999999665554443
No 321
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=52.77 E-value=39 Score=29.25 Aligned_cols=59 Identities=8% Similarity=-0.027 Sum_probs=38.1
Q ss_pred hceeEEEee-----e--eeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCC
Q 022757 9 LRLSFLTVM-----V--IIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 67 (292)
Q Consensus 9 ~k~i~fDiD-----G--tL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~ 67 (292)
+..|.+|+| | ...-.....|...+.++.|+++|+++++..+..........+...+.|+
T Consensus 40 ~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~ 105 (319)
T cd06591 40 LDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGY 105 (319)
T ss_pred ccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCE
Confidence 568899986 3 4322234678899999999999999887765332222233444445554
No 322
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=52.31 E-value=34 Score=29.95 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=49.3
Q ss_pred EEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCC
Q 022757 13 FLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDF 90 (292)
Q Consensus 13 ~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~ 90 (292)
.+|+.||=.|+.+.++=..-+.--+...|++|+...|.+.-+.....+.|+.+|+++.. +...+...+++.++
T Consensus 75 ~iDi~gtggdg~~t~nis~~~a~vlA~~G~~V~kHG~~~~~s~~GsadvLe~lGi~~~~-----~~~~~~~~l~~~g~ 147 (339)
T PRK00188 75 AVDIVGTGGDGANTFNISTAAAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDL-----SPEQVARCLEEVGI 147 (339)
T ss_pred CCcccCCCCCCCCccchHHHHHHHHHhCCCEEEEECCCCCCCCcCHHHHHHHcCCCCCC-----CHHHHHHHHHHcCc
Confidence 67888887777665553333445567889999888886655555567889999997632 33445666666543
No 323
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=51.79 E-value=31 Score=27.28 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCC
Q 022757 28 DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLG 66 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG 66 (292)
||.+++++..+++++|++++|.+ ...-+...|++++
T Consensus 76 p~fKef~e~ike~di~fiVvSsG---m~~fI~~lfe~iv 111 (220)
T COG4359 76 PGFKEFVEWIKEHDIPFIVVSSG---MDPFIYPLFEGIV 111 (220)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCC---CchHHHHHHHhhc
Confidence 66778888888889998888873 3334444555543
No 324
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=51.17 E-value=1.6e+02 Score=25.16 Aligned_cols=35 Identities=9% Similarity=-0.070 Sum_probs=22.6
Q ss_pred HHHHcCCC-CCcEEEECCCchhhHHHHHhcCCeEEEE
Q 022757 220 LANKFGIQ-KSQICMVGDRLDTDILFGQNGGCKTLLV 255 (292)
Q Consensus 220 ~~~~lgi~-~~~~~~iGD~l~~Di~~a~~aG~~~i~V 255 (292)
++...|+. |+++-.+|.+ ..++...-.-++.||-.
T Consensus 256 al~~~g~~vP~disv~gfd-~~~~~~~~~p~lttv~~ 291 (328)
T PRK11303 256 VLLERPGELPSDLAIATFG-DNELLDFLPCPVNAVAQ 291 (328)
T ss_pred HHHHcCCCCCCceEEEEeC-ChHHHhccCCCceEEec
Confidence 56677774 7888888876 45554444456677655
No 325
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=50.27 E-value=1.3e+02 Score=25.27 Aligned_cols=49 Identities=10% Similarity=0.163 Sum_probs=38.6
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCC--chhhHHHHHhcCCeEEEEecCCCCh
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDR--LDTDILFGQNGGCKTLLVLSGVTSL 262 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~--l~~Di~~a~~aG~~~i~V~~G~~~~ 262 (292)
|-.+|..++.+.+...++ +++|-+ -..|...|-+.|.+.+++.+|....
T Consensus 174 Gl~n~~~l~~i~e~~~vp----VivdAGIgt~sDa~~AmElGaDgVL~nSaIakA 224 (267)
T CHL00162 174 GLQNLLNLQIIIENAKIP----VIIDAGIGTPSEASQAMELGASGVLLNTAVAQA 224 (267)
T ss_pred CCCCHHHHHHHHHcCCCc----EEEeCCcCCHHHHHHHHHcCCCEEeecceeecC
Confidence 666899999999887764 444432 2589999999999999999998753
No 326
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=49.97 E-value=55 Score=29.06 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=34.6
Q ss_pred eeCCccC--CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 21 WKGDKLI--DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 21 ~~~~~~i--~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+.|..+. +...+.++.+++.|+.+.+.||.+..+.+ ..+.|.+.|++
T Consensus 68 ~~GGEPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~-~~~~L~~~g~~ 116 (378)
T PRK05301 68 FSGGEPLLRKDLEELVAHARELGLYTNLITSGVGLTEA-RLAALKDAGLD 116 (378)
T ss_pred EECCccCCchhHHHHHHHHHHcCCcEEEECCCccCCHH-HHHHHHHcCCC
Confidence 4444443 66789999999999999999998766654 45677777765
No 327
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=49.72 E-value=47 Score=29.08 Aligned_cols=72 Identities=18% Similarity=0.144 Sum_probs=53.5
Q ss_pred EEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCC
Q 022757 14 LTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDF 90 (292)
Q Consensus 14 fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~ 90 (292)
.|+.||=.|+.+.++=.-.+---+...|+||+-.-|.+.-+....++.|+.+|++++ .+...+.+.+++.++
T Consensus 78 vDi~GTGGDg~~T~NiSt~aA~v~A~~Gv~VaKHGnrs~sSksGsaDvleaLGv~l~-----~~~e~~~~~l~~~g~ 149 (338)
T COG0547 78 VDIVGTGGDGANTINISTAAAIVAAAAGVPVAKHGNRSVSSKSGSADVLEALGVNLE-----LSPEQAARALEETGI 149 (338)
T ss_pred CCeecCCCCCCCcccchHHHHHHHHhCCCcEEeECCCCCCCCCcHHHHHHHcCCCCC-----CCHHHHHHHHHhcCe
Confidence 799999999988665332223335678999999999887777778999999999754 244666677777654
No 328
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=49.28 E-value=9.5 Score=35.00 Aligned_cols=20 Identities=5% Similarity=-0.137 Sum_probs=15.5
Q ss_pred hceeEEEeeeeeeeCCccCC
Q 022757 9 LRLSFLTVMVIIWKGDKLID 28 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i~ 28 (292)
.+.++||+||||+.+....|
T Consensus 8 ~~~~~fD~DGTLlrs~ssFp 27 (498)
T PLN02499 8 SYSVVSELEGTLLKDADPFS 27 (498)
T ss_pred cceEEEecccceecCCCccH
Confidence 46899999999998654443
No 329
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=49.00 E-value=45 Score=31.25 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=51.8
Q ss_pred EEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCC
Q 022757 13 FLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDF 90 (292)
Q Consensus 13 ~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~ 90 (292)
.+|+.||=.|+.+.++=..-+.--+.+.|++|+...|.+.-+.....+.|+.+|+++. .+...+.+.+++.++
T Consensus 273 ~iD~~gtGgdg~~t~nist~aa~v~A~~Gv~V~kHG~r~~ss~~GsadvlealGi~~~-----~~~~~~~~~l~~~g~ 345 (531)
T PRK09522 273 FADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLD-----MNADKSRQALDELGV 345 (531)
T ss_pred cccccCCCCCCCCCcccHHHHHHHHHhCCCcEEEeCCCCCCCCccHHHHHHHcCCCCC-----CCHHHHHHHHHHhCc
Confidence 5889999888877665333344456788999999999776666677889999999753 233445566666654
No 330
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.28 E-value=25 Score=22.31 Aligned_cols=24 Identities=46% Similarity=0.558 Sum_probs=20.7
Q ss_pred HHHHHHcCCCCCcEEEECCCchhhHHHHH
Q 022757 218 DYLANKFGIQKSQICMVGDRLDTDILFGQ 246 (292)
Q Consensus 218 ~~~~~~lgi~~~~~~~iGD~l~~Di~~a~ 246 (292)
+++++.+|+ ++.+||. .-||+|-+
T Consensus 8 qQlLK~~G~----ivyfg~r-~~~iemm~ 31 (68)
T COG4483 8 QQLLKKFGI----IVYFGKR-LYDIEMMQ 31 (68)
T ss_pred HHHHHHCCe----eeecCCH-HHHHHHHH
Confidence 468889998 8999999 59999976
No 331
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.92 E-value=68 Score=27.76 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=38.4
Q ss_pred hceeEEEee-----------eeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCC
Q 022757 9 LRLSFLTVM-----------VIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 67 (292)
Q Consensus 9 ~k~i~fDiD-----------GtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~ 67 (292)
..++.+|+| |...=.....|...+.++.|+++|+++++..+..-.......+.+.+.|.
T Consensus 40 ~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~ 109 (317)
T cd06598 40 LDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGA 109 (317)
T ss_pred ceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCC
Confidence 457888875 23322234678899999999999999988877443222233445555554
No 332
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=46.59 E-value=22 Score=23.05 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=14.3
Q ss_pred HHHHHHcCCCCCcEEEECCC
Q 022757 218 DYLANKFGIQKSQICMVGDR 237 (292)
Q Consensus 218 ~~~~~~lgi~~~~~~~iGD~ 237 (292)
..+|++.|+...+++.|||-
T Consensus 46 ~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRIGDY 65 (69)
T ss_dssp HHHHHTTT--TT-EEEETTE
T ss_pred HHHHHHcCCCCCCEEEEcCE
Confidence 34888999999999999984
No 333
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=46.10 E-value=26 Score=25.33 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHCCCcEEEEeCCCCCCHH
Q 022757 28 DGVPETLDMLRSKGKRLVFVTNNSTKSRK 56 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~~~~~Tn~s~r~~~ 56 (292)
+...++++.++++|.+++.+|++..-+..
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (120)
T cd05710 61 KETVAAAKFAKEKGATVIGLTDDEDSPLA 89 (120)
T ss_pred hHHHHHHHHHHHcCCeEEEEECCCCCcHH
Confidence 44678999999999999999996544433
No 334
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=45.83 E-value=30 Score=30.01 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=34.9
Q ss_pred ceeEEEeeeee--eeC----CccCCCHHHHHHHHHHCCCcEEEEe----CCCCCCHHHHHHHHHcCCCC
Q 022757 10 RLSFLTVMVII--WKG----DKLIDGVPETLDMLRSKGKRLVFVT----NNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 10 k~i~fDiDGtL--~~~----~~~i~~a~eal~~L~~~G~~~~~~T----n~s~r~~~~~~~~l~~lG~~ 68 (292)
..|.+.+||.= ++. ...+..+.++|+.+++.|+++.+.| +.......++.+.+.++|++
T Consensus 125 ~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~ 193 (318)
T TIGR03470 125 LTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVD 193 (318)
T ss_pred cEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCC
Confidence 45778889952 221 1122335689999999999876532 22222234455566778875
No 335
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=45.59 E-value=36 Score=24.50 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHCCCcEEEEeCCCCC
Q 022757 28 DGVPETLDMLRSKGKRLVFVTNNSTK 53 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~~~~~Tn~s~r 53 (292)
++..++++.++++|.+++.+|++..-
T Consensus 60 ~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 34678899999999999999996533
No 336
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=45.44 E-value=31 Score=28.44 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=23.9
Q ss_pred eeeeeeCCccC--CCHHHHHHHHHHCCCcEEEEeCCCC
Q 022757 17 MVIIWKGDKLI--DGVPETLDMLRSKGKRLVFVTNNST 52 (292)
Q Consensus 17 DGtL~~~~~~i--~~a~eal~~L~~~G~~~~~~Tn~s~ 52 (292)
..+.+.|..+. +...+.++.+++.|+++.+-||.+.
T Consensus 74 ~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl 111 (238)
T TIGR03365 74 LHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSV 111 (238)
T ss_pred CeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCC
Confidence 34555555543 4466778888888888888888654
No 337
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=45.17 E-value=41 Score=28.68 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=40.4
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHH------HhcCCeEEEEecCCC
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFG------QNGGCKTLLVLSGVT 260 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a------~~aG~~~i~V~~G~~ 260 (292)
--|+++.|..+++.+||..++++++=|+ .+-..++ +.+|..-|.|+.|.-
T Consensus 71 ~lp~~e~fa~~~~~~GI~~d~tVVvYdd-~~~~~A~ra~W~l~~~Gh~~V~iLdGG~ 126 (285)
T COG2897 71 MLPSPEQFAKLLGELGIRNDDTVVVYDD-GGGFFAARAWWLLRYLGHENVRILDGGL 126 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEECC-CCCeehHHHHHHHHHcCCCceEEecCCH
Confidence 5688999999999999999998888887 3545444 457999999988753
No 338
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=45.05 E-value=57 Score=26.45 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=31.9
Q ss_pred eEEEe--eeeeeeCCccC--CC-HHHHHHHHHHCCCcEEEEeCCCC
Q 022757 12 SFLTV--MVIIWKGDKLI--DG-VPETLDMLRSKGKRLVFVTNNST 52 (292)
Q Consensus 12 i~fDi--DGtL~~~~~~i--~~-a~eal~~L~~~G~~~~~~Tn~s~ 52 (292)
.||+. .|+-+.|+.+. ++ +.+.++.+++.|+++++.||...
T Consensus 33 ~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~ 78 (213)
T PRK10076 33 IFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDA 78 (213)
T ss_pred HhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45555 68888887764 33 46899999999999999999763
No 339
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=44.85 E-value=24 Score=32.18 Aligned_cols=31 Identities=39% Similarity=0.573 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHH
Q 022757 28 DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKF 62 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l 62 (292)
|.....|++|++.|++++++|| |+..+....
T Consensus 186 ~~l~~~L~~lr~~GKklFLiTN----S~~~yt~~~ 216 (448)
T PF05761_consen 186 PKLPPWLERLRSAGKKLFLITN----SPFDYTNAV 216 (448)
T ss_dssp CHHHHHHHHHHCCT-EEEEE-S----S-HHHHHHH
T ss_pred chHHHHHHHHHhcCceEEEecC----CCCchhhhh
Confidence 4466899999999999999999 565555543
No 340
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=43.95 E-value=85 Score=29.65 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=37.5
Q ss_pred ceeEEEeeeeeeeC--CccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHH-cCCC
Q 022757 10 RLSFLTVMVIIWKG--DKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFE-TLGL 67 (292)
Q Consensus 10 k~i~fDiDGtL~~~--~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~-~lG~ 67 (292)
-..++|+||-+++- .+-+. -.+.++...+.|+|++++|.-++ +++..+++. .+|-
T Consensus 256 giAvldldGevl~~~S~r~~~-~~eVve~I~~lG~PvvVAtDVtp--~P~~V~KiAasf~A 313 (652)
T COG2433 256 GIAVLDLDGEVLDLESRRGID-RSEVVEFISELGKPVVVATDVTP--APETVKKIAASFNA 313 (652)
T ss_pred eEEEEecCCcEEeeeccccCC-HHHHHHHHHHcCCceEEEccCCC--ChHHHHHHHHHcCC
Confidence 35789999988763 33332 56778889999999999999442 244455553 4553
No 341
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=43.27 E-value=51 Score=29.16 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEe
Q 022757 213 STFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVL 256 (292)
Q Consensus 213 ~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~ 256 (292)
+...|+.+.+|+|- +-.-++|||+ ..--.+||+..|..+-+.
T Consensus 410 KescFerI~~RFg~-K~~yvvIgdG-~eee~aAK~ln~PfwrI~ 451 (468)
T KOG3107|consen 410 KESCFERIQSRFGR-KVVYVVIGDG-VEEEQAAKALNMPFWRIS 451 (468)
T ss_pred HHHHHHHHHHHhCC-ceEEEEecCc-HHHHHHHHhhCCceEeec
Confidence 36889999999997 5778999999 577889999998877664
No 342
>PF06995 Phage_P2_GpU: Phage P2 GpU; InterPro: IPR009734 This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein (O64315 from SWISSPROT) which is thought to be involved in tail assembly [].
Probab=43.06 E-value=44 Score=24.27 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=28.4
Q ss_pred EEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCC
Q 022757 13 FLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNN 50 (292)
Q Consensus 13 ~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~ 50 (292)
-+.+.|+|+..........+.|+.+.++|.+..++.|+
T Consensus 44 ~itl~g~l~~~~~~~~~~l~~Lr~~~~~g~p~~Lv~G~ 81 (121)
T PF06995_consen 44 TITLSGVLFPEFGGGRKELDKLRAMAESGEPLPLVIGS 81 (121)
T ss_pred eEEEEEEEehHHCCCHHHHHHHHHHHHcCCceEEEECC
Confidence 45678999864433333568899999999999999983
No 343
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=42.46 E-value=34 Score=22.11 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=17.2
Q ss_pred HHHHHHcCCCCCcEEEECCC
Q 022757 218 DYLANKFGIQKSQICMVGDR 237 (292)
Q Consensus 218 ~~~~~~lgi~~~~~~~iGD~ 237 (292)
..+|+..|+.+.+++.|||-
T Consensus 46 ~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred HHHHHHcCCCCCCEEEEccE
Confidence 34889999999999999984
No 344
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=42.21 E-value=37 Score=22.14 Aligned_cols=46 Identities=17% Similarity=0.374 Sum_probs=35.5
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecC
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSG 258 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G 258 (292)
.-|-...+.++++.+++++..+..|-++ ...|-.++.+| .++...|
T Consensus 25 ~aPftAvlkfaAEeFkv~~~TsAiiTnd-GvGINP~qtAG--nvflkhg 70 (82)
T cd01766 25 STPFTAVLKFAAEEFKVPAATSAIITND-GIGINPAQTAG--NVFLKHG 70 (82)
T ss_pred cCchHHHHHHHHHhcCCCccceeEEecC-ccccChhhccc--ceeeecC
Confidence 3455667777999999999999888888 68899999998 3444433
No 345
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=41.84 E-value=73 Score=24.93 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=32.3
Q ss_pred eeeeeeeCCccC--CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCC
Q 022757 16 VMVIIWKGDKLI--DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLG 66 (292)
Q Consensus 16 iDGtL~~~~~~i--~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG 66 (292)
+.++.+.|+.+. +...+.++.+++.|+.+.+.||.+ . .+..+.+.+.|
T Consensus 63 ~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~TNg~--~-~~~l~~l~~~g 112 (191)
T TIGR02495 63 IDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLDTNGS--N-PRVLEELLEEG 112 (191)
T ss_pred CCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEEeCCC--C-HHHHHHHHhcC
Confidence 345555565554 446688999999999999999975 2 34445555555
No 346
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=41.68 E-value=1.2e+02 Score=23.80 Aligned_cols=76 Identities=9% Similarity=0.257 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHCCCcEEE----EeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCCCCCCeEEEEcChhH
Q 022757 29 GVPETLDMLRSKGKRLVF----VTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGI 104 (292)
Q Consensus 29 ~a~eal~~L~~~G~~~~~----~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~ 104 (292)
...+.+++++++|+.+++ +.|=+ +. +.-.++|.+.+ .++.|+|......++.++.++..-.++|++.+..+
T Consensus 32 ~l~~~v~~~~~~gK~vfVHiDli~Gl~-~D-~~~i~~L~~~~---~~dGIISTk~~~i~~Ak~~gl~tIqRiFliDS~al 106 (175)
T PF04309_consen 32 NLKDIVKRLKAAGKKVFVHIDLIEGLS-RD-EAGIEYLKEYG---KPDGIISTKSNLIKRAKKLGLLTIQRIFLIDSSAL 106 (175)
T ss_dssp CHHHHHHHHHHTT-EEEEECCGEETB--SS-HHHHHHHHHTT-----SEEEESSHHHHHHHHHTT-EEEEEEE-SSHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEehhcCCCC-CC-HHHHHHHHHcC---CCcEEEeCCHHHHHHHHHcCCEEEEEeeeecHHHH
Confidence 377889999999998764 45522 22 44466777765 23579999998999999888654567788877777
Q ss_pred HHHHH
Q 022757 105 LKELE 109 (292)
Q Consensus 105 ~~~l~ 109 (292)
...++
T Consensus 107 ~~~~~ 111 (175)
T PF04309_consen 107 ETGIK 111 (175)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 347
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=41.65 E-value=44 Score=25.32 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=26.3
Q ss_pred eeeeeeeCCccCCC-HHHHHHHHHHCCCcEEEEeC
Q 022757 16 VMVIIWKGDKLIDG-VPETLDMLRSKGKRLVFVTN 49 (292)
Q Consensus 16 iDGtL~~~~~~i~~-a~eal~~L~~~G~~~~~~Tn 49 (292)
+.|+.+.|....+. ..+.++.+++.|+++.+-||
T Consensus 62 ~~gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~l~Tg 96 (147)
T TIGR02826 62 ISCVLFLGGEWNREALLSLLKIFKEKGLKTCLYTG 96 (147)
T ss_pred CCEEEEechhcCHHHHHHHHHHHHHCCCCEEEECC
Confidence 46888877663333 55888899999999999998
No 348
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=41.56 E-value=78 Score=27.55 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHH
Q 022757 28 DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKF 62 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l 62 (292)
|...+.++.+++.|+.+.+.||.+. .+..+.|
T Consensus 145 p~l~eli~~~k~~Gi~~~L~TNG~~---~e~l~~L 176 (322)
T PRK13762 145 PYLPELIEEFHKRGFTTFLVTNGTR---PDVLEKL 176 (322)
T ss_pred hhHHHHHHHHHHcCCCEEEECCCCC---HHHHHHH
Confidence 5678999999999999999999753 3444555
No 349
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=41.42 E-value=34 Score=29.14 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=27.9
Q ss_pred CchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHH
Q 022757 237 RLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 289 (292)
Q Consensus 237 ~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~ 289 (292)
.+..++.+++.+|++.+++.+|...... . ....|.+-..+..+|.+.+.
T Consensus 86 ~l~~~L~~~~~~Gi~niL~l~GD~~~~g-~---~~~~~~~~~~~~~~Li~~i~ 134 (287)
T PF02219_consen 86 ALQSDLLGAHALGIRNILALTGDPPKGG-D---HFAKPVFDFDYALDLIRLIR 134 (287)
T ss_dssp HHHHHHHHHHHTT--EEEEESS-TSTTS-S---S----TTS-SSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEecCCCCCCC-c---cccCCCchhHHHHHHHHHHH
Confidence 3567899999999999999999654321 0 01233333555667776665
No 350
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=41.06 E-value=48 Score=25.74 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHCCCcEEEEeCCCCCCHHH
Q 022757 28 DGVPETLDMLRSKGKRLVFVTNNSTKSRKQ 57 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~ 57 (292)
+...++++.++++|.+++.+|++..-+...
T Consensus 86 ~~~i~~~~~ak~~g~~ii~IT~~~~s~la~ 115 (179)
T TIGR03127 86 ESLVTVAKKAKEIGATVAAITTNPESTLGK 115 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCchHH
Confidence 446788999999999999999966544444
No 351
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=40.77 E-value=26 Score=23.54 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=26.4
Q ss_pred eCCccCCCHHHHHHHHHHCCCcEEEEeCCC-CCCHHHHHHHHHcCCCC
Q 022757 22 KGDKLIDGVPETLDMLRSKGKRLVFVTNNS-TKSRKQYGKKFETLGLT 68 (292)
Q Consensus 22 ~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s-~r~~~~~~~~l~~lG~~ 68 (292)
++.+...|..+.++.+++....++++.+++ .+....+...-+..+++
T Consensus 8 ragkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp 55 (82)
T PRK13602 8 QAKSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVP 55 (82)
T ss_pred hcCCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 344567789999999986655555444433 33223333333445554
No 352
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=40.57 E-value=42 Score=26.06 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHCCCcEEEEeCCCCCC
Q 022757 28 DGVPETLDMLRSKGKRLVFVTNNSTKS 54 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~~~~~Tn~s~r~ 54 (292)
+...++++.++++|.+++.+|+++.-+
T Consensus 115 ~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 115 PNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 446788888888899988888854433
No 353
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=40.19 E-value=97 Score=23.03 Aligned_cols=50 Identities=16% Similarity=0.091 Sum_probs=34.2
Q ss_pred cCCcHHHHHHHHHHcCCCCCc-EEEECCC---ch---hhHHHHHhcCCeEEEEecCC
Q 022757 210 GKPSTFMMDYLANKFGIQKSQ-ICMVGDR---LD---TDILFGQNGGCKTLLVLSGV 259 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~-~~~iGD~---l~---~Di~~a~~aG~~~i~V~~G~ 259 (292)
-.|.+.-|..+++.+|++++. +++.+++ -. .-.-+++.+|.+.+.|..|.
T Consensus 76 ~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG 132 (138)
T cd01445 76 MEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGG 132 (138)
T ss_pred CCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCC
Confidence 466778899999999998765 5555542 11 12225677899888887764
No 354
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=39.80 E-value=44 Score=24.16 Aligned_cols=25 Identities=12% Similarity=0.442 Sum_probs=19.7
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCCC
Q 022757 30 VPETLDMLRSKGKRLVFVTNNSTKS 54 (292)
Q Consensus 30 a~eal~~L~~~G~~~~~~Tn~s~r~ 54 (292)
..++++.++++|.+++.+|++....
T Consensus 76 ~~~~~~~a~~~g~~iv~iT~~~~~~ 100 (139)
T cd05013 76 TVEAAEIAKERGAKVIAITDSANSP 100 (139)
T ss_pred HHHHHHHHHHcCCeEEEEcCCCCCh
Confidence 5678888899999999999865543
No 355
>PRK06683 hypothetical protein; Provisional
Probab=39.57 E-value=30 Score=23.27 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=29.2
Q ss_pred eCCccCCCHHHHHHHHHHCC-CcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 22 KGDKLIDGVPETLDMLRSKG-KRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 22 ~~~~~i~~a~eal~~L~~~G-~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+..+..-|..+.++.++... +.++++.|.+.+....+...-+..+++
T Consensus 8 ~agk~v~G~~~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vp 55 (82)
T PRK06683 8 NAENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIP 55 (82)
T ss_pred hCCCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCC
Confidence 44556778889999987544 456666665544445444444555654
No 356
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=39.49 E-value=22 Score=25.42 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=31.8
Q ss_pred eeeeCCccCCCHHHHHHHHHHCCCc-EEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 19 IIWKGDKLIDGVPETLDMLRSKGKR-LVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 19 tL~~~~~~i~~a~eal~~L~~~G~~-~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.-......+.|..++++.++..... |++++|.+.++...+...-+..+++
T Consensus 19 la~raGKlv~G~~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vp 69 (108)
T PTZ00106 19 LVMKSGKYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTG 69 (108)
T ss_pred HHHHhCCeeecHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCC
Confidence 3345667778899999999865544 5555564455555555555556664
No 357
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=38.08 E-value=1.7e+02 Score=21.82 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=19.8
Q ss_pred HHHHHHHHHHCCC--cEEEEeCCCCCCHHH---HHHHHHcCCCC
Q 022757 30 VPETLDMLRSKGK--RLVFVTNNSTKSRKQ---YGKKFETLGLT 68 (292)
Q Consensus 30 a~eal~~L~~~G~--~~~~~Tn~s~r~~~~---~~~~l~~lG~~ 68 (292)
..+.+++|+++|. ..+++-|+...+.+. ..++|+++|++
T Consensus 69 ~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~ 112 (134)
T TIGR01501 69 CKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFD 112 (134)
T ss_pred HHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCC
Confidence 4456666666664 334455543333322 23456677763
No 358
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=37.69 E-value=65 Score=28.66 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=43.9
Q ss_pred EeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCC---CCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCCC
Q 022757 15 TVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNS---TKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFP 91 (292)
Q Consensus 15 DiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s---~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~~ 91 (292)
++|+++...+.+. +....+.|++.|++++-.+-.+ .++.....+.|++.|++......+++...+.+++++.++|
T Consensus 27 ~id~vi~g~E~~l--~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~ea~~~~~~~g~P 104 (379)
T PRK13790 27 NVDWVVIGPEQPL--IDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELP 104 (379)
T ss_pred CCCEEEECCcHHH--HHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHhcCCC
Confidence 5677776554322 3355667888898753211100 0122233466788999877666677766666777666553
No 359
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=37.23 E-value=55 Score=29.51 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=39.3
Q ss_pred eeEEEeeee--eeeCCc-------cCCCHHHHHHHHHHCCCcEE---EEeCCCCCCHHHHHHHHHcCCCC
Q 022757 11 LSFLTVMVI--IWKGDK-------LIDGVPETLDMLRSKGKRLV---FVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 11 ~i~fDiDGt--L~~~~~-------~i~~a~eal~~L~~~G~~~~---~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.|-+-+||. ++|..+ .+..+.++++.|++.|+++- .+|........++.+.+.++|+.
T Consensus 127 ~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~i~~vv~~~n~~~~~e~~~~~~~lg~~ 196 (412)
T PRK13745 127 LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWNAMAVVNDFNADYPLDFYHFFKELDCH 196 (412)
T ss_pred EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEEEEEEEcCCccccHHHHHHHHHHcCCC
Confidence 566788887 333222 22235678899999998864 34555555567788888999986
No 360
>PRK06186 hypothetical protein; Validated
Probab=37.19 E-value=31 Score=28.33 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=29.1
Q ss_pred EEEeeeeeeeC---CccCCCHHHHHHHHHHCCCcE-EEEeC
Q 022757 13 FLTVMVIIWKG---DKLIDGVPETLDMLRSKGKRL-VFVTN 49 (292)
Q Consensus 13 ~fDiDGtL~~~---~~~i~~a~eal~~L~~~G~~~-~~~Tn 49 (292)
+-++||.|+-+ .+-+.|...+++..|++++|+ .+|-|
T Consensus 51 l~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClG 91 (229)
T PRK06186 51 LAGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGG 91 (229)
T ss_pred HhhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechh
Confidence 45779999854 355777889999999999996 46666
No 361
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=36.87 E-value=59 Score=26.34 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=23.9
Q ss_pred eeeeeeeCCccC--CCHHHHHHHHHHCCCcEEEEeCCC
Q 022757 16 VMVIIWKGDKLI--DGVPETLDMLRSKGKRLVFVTNNS 51 (292)
Q Consensus 16 iDGtL~~~~~~i--~~a~eal~~L~~~G~~~~~~Tn~s 51 (292)
.-|+.+.|..+. +...+.++.|+++|+++.+=||.+
T Consensus 72 ~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngt 109 (212)
T COG0602 72 ARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGT 109 (212)
T ss_pred cceEEEeCCcCCCcccHHHHHHHHHhCCceEEecCCCC
Confidence 336666666552 356777777777777777777744
No 362
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=36.85 E-value=58 Score=23.39 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.0
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCC
Q 022757 30 VPETLDMLRSKGKRLVFVTNNSTK 53 (292)
Q Consensus 30 a~eal~~L~~~G~~~~~~Tn~s~r 53 (292)
..+.++.++++|.+++.+|++...
T Consensus 69 ~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 69 LIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp HHHHHHHHHHTTSEEEEEESSTTS
T ss_pred hhhhhHHHHhcCCeEEEEeCCCCC
Confidence 568899999999999999985543
No 363
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=35.99 E-value=73 Score=28.75 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=30.6
Q ss_pred HHHHHHHHHCCCc------EEEEeCCCC------CCHHHHHHHHHcCCCCCCCCceechH--------HHHHHHHHhcCC
Q 022757 31 PETLDMLRSKGKR------LVFVTNNST------KSRKQYGKKFETLGLTVTEEEIFASS--------FAAAAYLKSIDF 90 (292)
Q Consensus 31 ~eal~~L~~~G~~------~~~~Tn~s~------r~~~~~~~~l~~lG~~~~~~~i~~~~--------~~~~~~l~~~~~ 90 (292)
.++|+.|.+.|+- ++-.+||.+ +..++++++|++-|+|. -|++|. ....+.+++.++
T Consensus 289 lD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDA---vILtstCgtCtrcga~m~keiE~~GI 365 (431)
T TIGR01917 289 VDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDA---VILTSTUGTCTRCGATMVKEIERAGI 365 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCE---EEEcCCCCcchhHHHHHHHHHHHcCC
Confidence 4667777777752 222222222 33455677777777762 233322 334456666666
Q ss_pred C
Q 022757 91 P 91 (292)
Q Consensus 91 ~ 91 (292)
|
T Consensus 366 P 366 (431)
T TIGR01917 366 P 366 (431)
T ss_pred C
Confidence 5
No 364
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=35.02 E-value=50 Score=27.70 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=33.2
Q ss_pred EeeeeeeeCCccC---CCHHHHHHHHHHCCCcEEEEeCCCCCCH
Q 022757 15 TVMVIIWKGDKLI---DGVPETLDMLRSKGKRLVFVTNNSTKSR 55 (292)
Q Consensus 15 DiDGtL~~~~~~i---~~a~eal~~L~~~G~~~~~~Tn~s~r~~ 55 (292)
..+|+-+.++.+. +.+.+.++.+++.|+++.+.||......
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~ 126 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPE 126 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHH
Confidence 7899999888763 3367889999999999999999764443
No 365
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=34.43 E-value=76 Score=28.72 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=30.0
Q ss_pred EEeeeeeeeCC---ccCCC-HHHHHHHHHH-CCCcEEEE-eCCCCC---CHHHHHHHHH
Q 022757 14 LTVMVIIWKGD---KLIDG-VPETLDMLRS-KGKRLVFV-TNNSTK---SRKQYGKKFE 63 (292)
Q Consensus 14 fDiDGtL~~~~---~~i~~-a~eal~~L~~-~G~~~~~~-Tn~s~r---~~~~~~~~l~ 63 (292)
+++|||++... +++.+ .....+.+++ .|+|+..+ |..+.. +..++..+++
T Consensus 349 ~~aDGVI~~~~~~C~~~~~e~~~~~~~l~e~~GIP~L~iE~D~~d~r~~d~gQ~~TRiE 407 (413)
T TIGR02260 349 YEADGLLINSIKSCNSFSAGQLLMMREIEKRTGKPAAFIETDLVDPRYFSAANVKNRLE 407 (413)
T ss_pred hCCCEEEEeccCCCCcchhhhHHHHHHHHHHcCCCEEEEEcCCCCcccCCHHHHHHHHH
Confidence 56789887544 33433 3445566765 79997666 555544 4566655554
No 366
>PRK07394 hypothetical protein; Provisional
Probab=34.20 E-value=2.4e+02 Score=24.81 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=47.7
Q ss_pred EEEeeeeeeeCC-ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHH--HHHHHHcCCCCCCCCceechHHHHHHHHHhcC
Q 022757 13 FLTVMVIIWKGD-KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQ--YGKKFETLGLTVTEEEIFASSFAAAAYLKSID 89 (292)
Q Consensus 13 ~fDiDGtL~~~~-~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~--~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~ 89 (292)
..|+=||=.|+. +.++=..-+---+...|++|+..-|.+.-+... ..+.|+.+|+++.. .+...+.+.+++.+
T Consensus 83 ~~d~~GtggDG~~~t~NiSt~aA~v~A~~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~----~~~~~~~~~l~~~g 158 (342)
T PRK07394 83 PPIVFGMPYDGRSRTAPIYPLTALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTG----LSLEQVQEGFEQTG 158 (342)
T ss_pred ceeEEeCCCCCCCCCcccHHHHHHHHHHCCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCC----CCHHHHHHHHHHcC
Confidence 457767777874 555544444445678899998888865444434 67889999997532 03344566676665
Q ss_pred C
Q 022757 90 F 90 (292)
Q Consensus 90 ~ 90 (292)
+
T Consensus 159 ~ 159 (342)
T PRK07394 159 L 159 (342)
T ss_pred c
Confidence 4
No 367
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=34.19 E-value=86 Score=23.65 Aligned_cols=38 Identities=8% Similarity=0.042 Sum_probs=23.1
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCCCH---HHHHHHHHcCCCC
Q 022757 31 PETLDMLRSKGKRLVFVTNNSTKSR---KQYGKKFETLGLT 68 (292)
Q Consensus 31 ~eal~~L~~~G~~~~~~Tn~s~r~~---~~~~~~l~~lG~~ 68 (292)
.|++++..+....++.+|.-+.... +++.+.|++.|.+
T Consensus 53 ~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~ 93 (143)
T COG2185 53 EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVE 93 (143)
T ss_pred HHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCc
Confidence 5667777667677666666554444 2345556666764
No 368
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=34.10 E-value=1e+02 Score=22.83 Aligned_cols=13 Identities=8% Similarity=-0.026 Sum_probs=6.6
Q ss_pred HHHHHHHHHHCCC
Q 022757 30 VPETLDMLRSKGK 42 (292)
Q Consensus 30 a~eal~~L~~~G~ 42 (292)
..+.++.|+++|.
T Consensus 67 ~~~~~~~l~~~gl 79 (128)
T cd02072 67 CKGLREKCDEAGL 79 (128)
T ss_pred HHHHHHHHHHCCC
Confidence 3445555555554
No 369
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=34.05 E-value=67 Score=31.94 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=35.8
Q ss_pred HHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEe--CCHhhHHHhH
Q 022757 222 NKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT--NKISDFLSLK 288 (292)
Q Consensus 222 ~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~--~~l~~l~~~~ 288 (292)
+.+.-....+.||||++ ||-.+...|- +++..|.++.-..+ -+|.++ ++|.+++..+
T Consensus 779 k~lq~~~~~VaMVGDGI-NDaPALA~Ad---VGIaig~gs~vAie------aADIVLmrn~L~~v~~ai 837 (951)
T KOG0207|consen 779 KEIQKNGGPVAMVGDGI-NDAPALAQAD---VGIAIGAGSDVAIE------AADIVLMRNDLRDVPFAI 837 (951)
T ss_pred HHHHhcCCcEEEEeCCC-CccHHHHhhc---cceeeccccHHHHh------hCCEEEEccchhhhHHHH
Confidence 44444446799999995 9999888887 66766666432222 345443 4555655433
No 370
>TIGR00035 asp_race aspartate racemase.
Probab=33.79 E-value=2.6e+02 Score=22.74 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHc-CCCCCCCCceechHHHHHHHHHhcCCCCCCeEEEEcChh--
Q 022757 27 IDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDG-- 103 (292)
Q Consensus 27 i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~-lG~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~g~~~-- 103 (292)
.+...+++++|.+.|..++++.-|+ ...+.+.+++ .++ .+++-...+...+++.+ .+++.+++...
T Consensus 61 ~~~l~~~~~~L~~~g~d~iviaCNT---ah~~~~~l~~~~~i-----Pii~i~~~~~~~~~~~~---~~~VgvLaT~~T~ 129 (229)
T TIGR00035 61 RPILIDIAVKLENAGADFIIMPCNT---AHKFAEDIQKAIGI-----PLISMIEETAEAVKEDG---VKKAGLLGTKGTM 129 (229)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcc---HHHHHHHHHHhCCC-----CEechHHHHHHHHHHcC---CCEEEEEecHHHH
Confidence 3445688999999999987777755 3333455553 454 34555566666675543 25788887653
Q ss_pred ----HHHHHHHcCCeecC
Q 022757 104 ----ILKELELAGFQYLG 117 (292)
Q Consensus 104 ----~~~~l~~~g~~~~~ 117 (292)
+.+.+...|+.++.
T Consensus 130 ~s~~y~~~l~~~g~~v~~ 147 (229)
T TIGR00035 130 KDGVYEREMKKHGIEIVT 147 (229)
T ss_pred HhHHHHHHHHHCCCEEEC
Confidence 45667777877643
No 371
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=33.73 E-value=28 Score=31.03 Aligned_cols=38 Identities=11% Similarity=-0.060 Sum_probs=25.8
Q ss_pred hhhhceeEEEeeeeeeeCCccCCC--HH-HHHHHHHHCCCc
Q 022757 6 LTLLRLSFLTVMVIIWKGDKLIDG--VP-ETLDMLRSKGKR 43 (292)
Q Consensus 6 ~~~~k~i~fDiDGtL~~~~~~i~~--a~-eal~~L~~~G~~ 43 (292)
|..+.+|.||||+||..=...-.. |- -+...+.+.|.+
T Consensus 24 l~~i~~~GfdmDyTL~~Y~~~~~esLay~~~~~~l~~~Gyp 64 (424)
T KOG2469|consen 24 LENIGIVGFDMDYTLARYNLPEMESLAYDLAQFLLKDKGYP 64 (424)
T ss_pred hhcCcEEeeccccchhhhcccchHHHHHHHHHHHHHhcCCh
Confidence 678999999999999754332222 22 235567778877
No 372
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=33.72 E-value=42 Score=31.69 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=36.6
Q ss_pred hceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 9 LRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.|.+++|+.++-.-....+..-.+..++++++|+.+.++-- .+++.+.++..|+.
T Consensus 494 ~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~-----~~~v~~~l~~~gl~ 548 (563)
T TIGR00815 494 LQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLANP-----NKAVRSTLKRGGLV 548 (563)
T ss_pred ceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEecC-----ChHHHHHHHHCCch
Confidence 47899999987542222222234677778889988866543 35677788888874
No 373
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=33.47 E-value=76 Score=22.73 Aligned_cols=24 Identities=13% Similarity=0.396 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHCCCcEEEEeCCC
Q 022757 28 DGVPETLDMLRSKGKRLVFVTNNS 51 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~~~~~Tn~s 51 (292)
+...++++.++++|.+++.+|+++
T Consensus 57 ~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 57 EETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 345678888888999998888743
No 374
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=32.98 E-value=82 Score=25.11 Aligned_cols=57 Identities=9% Similarity=0.154 Sum_probs=40.7
Q ss_pred eeEEEeeeeeee---CCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 11 LSFLTVMVIIWK---GDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 11 ~i~fDiDGtL~~---~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.-+||+|.-++- ++-++.+..+.-+.+++.++.+.++|= +....+.++++|-+.|+.
T Consensus 113 v~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtV-Pa~~AQ~vad~Lv~aGVk 172 (211)
T COG2344 113 VAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTV-PAEHAQEVADRLVKAGVK 172 (211)
T ss_pred EEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEc-cHHHHHHHHHHHHHcCCc
Confidence 457999955432 124456667777888889999999998 335567778888888874
No 375
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.93 E-value=1e+02 Score=26.27 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=31.8
Q ss_pred hceeEEEee-ee------------eeeC-CccCCCHHHHHHHHHHCCCcEEEEeCCC
Q 022757 9 LRLSFLTVM-VI------------IWKG-DKLIDGVPETLDMLRSKGKRLVFVTNNS 51 (292)
Q Consensus 9 ~k~i~fDiD-Gt------------L~~~-~~~i~~a~eal~~L~~~G~~~~~~Tn~s 51 (292)
..+|.+|+| -+ -++. ....|+..+.++.|.++|+++++.....
T Consensus 41 ~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 41 LDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred ccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 468889986 11 2222 2467999999999999999998887743
No 376
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=32.91 E-value=46 Score=23.10 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=20.6
Q ss_pred eeCCccCCCHHHHHHHHHHCCCc-EEEEeC
Q 022757 21 WKGDKLIDGVPETLDMLRSKGKR-LVFVTN 49 (292)
Q Consensus 21 ~~~~~~i~~a~eal~~L~~~G~~-~~~~Tn 49 (292)
+++...+-|.+++++.++...-+ +++++|
T Consensus 15 vkTGkvilG~k~tiK~lk~gkaKliiiAsN 44 (100)
T COG1911 15 VKTGKVILGSKRTIKSLKLGKAKLIIIASN 44 (100)
T ss_pred HhcCCEEEehHHHHHHHHcCCCcEEEEecC
Confidence 35566678899999999876555 555555
No 377
>PLN02257 phosphoribosylamine--glycine ligase
Probab=32.90 E-value=74 Score=28.99 Aligned_cols=74 Identities=16% Similarity=0.145 Sum_probs=41.9
Q ss_pred EeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCC---CCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCC
Q 022757 15 TVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNS---TKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDF 90 (292)
Q Consensus 15 DiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s---~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~ 90 (292)
|+|.|+...+.+. +....+.|++.|++++--+-.+ ..+.....+.+++.|++......+++...+..++++.++
T Consensus 62 ~id~vvvg~E~~l--v~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~~e~~~~~~~~g~ 138 (434)
T PLN02257 62 GVGLVVVGPEAPL--VAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQGA 138 (434)
T ss_pred CCCEEEECCchHH--HHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCC
Confidence 5566665443222 3356677788888753221101 112333455677889887666667766666667766554
No 378
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=32.81 E-value=1.6e+02 Score=23.76 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=35.9
Q ss_pred cCCcHHHHHHHHHHcCC-CCCcEEEECCCchhhHHHHHhcCCeEEEEe
Q 022757 210 GKPSTFMMDYLANKFGI-QKSQICMVGDRLDTDILFGQNGGCKTLLVL 256 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi-~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~ 256 (292)
++|++..-..+- ++.. +..+++.+|.+...|.....+.|+.++.|-
T Consensus 17 ~~p~~~l~~~~~-~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD 63 (213)
T TIGR03840 17 SEVNPLLVKHWP-ALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVE 63 (213)
T ss_pred CCCCHHHHHHHH-hhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEe
Confidence 688888766554 3433 446899999999999999999999999884
No 379
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=32.81 E-value=1.6e+02 Score=21.24 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=21.0
Q ss_pred HHHCCCcEEEEeCCCCCCHHHHHHHHH
Q 022757 37 LRSKGKRLVFVTNNSTKSRKQYGKKFE 63 (292)
Q Consensus 37 L~~~G~~~~~~Tn~s~r~~~~~~~~l~ 63 (292)
|+..|+|++-+......+...+.+.++
T Consensus 97 l~~agiplir~~~~~~~~~~~l~~~l~ 123 (126)
T PF10881_consen 97 LKKAGIPLIRISPKDSYSVEELRRDLR 123 (126)
T ss_pred HHHCCCCEEEEeCCCCCCHHHHHHHHH
Confidence 588899998887666677787777764
No 380
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=32.77 E-value=61 Score=24.59 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHCCCcEEEEeCCCCC
Q 022757 29 GVPETLDMLRSKGKRLVFVTNNSTK 53 (292)
Q Consensus 29 ~a~eal~~L~~~G~~~~~~Tn~s~r 53 (292)
...++++.++++|.+++.+|++..-
T Consensus 94 ~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 94 NVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3557777778888888888875433
No 381
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=32.42 E-value=1.2e+02 Score=24.58 Aligned_cols=51 Identities=12% Similarity=0.232 Sum_probs=35.0
Q ss_pred EEeeeeeeeCCc-cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCC
Q 022757 14 LTVMVIIWKGDK-LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 67 (292)
Q Consensus 14 fDiDGtL~~~~~-~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~ 67 (292)
|+-|=+++-|.+ ..||-..|-+.|.+.++|.++++.. +-....+.+++-||
T Consensus 59 ~~pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDa---Pg~~vkdeleeqGl 110 (277)
T COG1927 59 FNPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDA---PGLKVKDELEEQGL 110 (277)
T ss_pred cCCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCC---ccchhHHHHHhcCC
Confidence 344556665544 4588788888888889999888883 34455566776565
No 382
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=32.41 E-value=36 Score=29.75 Aligned_cols=20 Identities=35% Similarity=0.590 Sum_probs=18.3
Q ss_pred HHHHHHHHHHCCCcEEEEeC
Q 022757 30 VPETLDMLRSKGKRLVFVTN 49 (292)
Q Consensus 30 a~eal~~L~~~G~~~~~~Tn 49 (292)
...++++|++.|++++++||
T Consensus 245 l~~fl~kL~~~GKklFLiTN 264 (510)
T KOG2470|consen 245 LLAFLRKLKDHGKKLFLITN 264 (510)
T ss_pred HHHHHHHHHHhcCcEEEEeC
Confidence 45789999999999999999
No 383
>PRK07475 hypothetical protein; Provisional
Probab=32.40 E-value=2.9e+02 Score=22.86 Aligned_cols=81 Identities=19% Similarity=0.309 Sum_probs=52.7
Q ss_pred ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHH-cCCCCCCCCceechHHHHHHHHHhcCCCCCCeEEEEcChh
Q 022757 25 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFE-TLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDG 103 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~-~lG~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~g~~~ 103 (292)
.+.+...++.++|.+.|..++..+-| +...+.+.++ ..+++ ++++.......++... +..+++-+++...
T Consensus 62 ~~~~~l~~aa~~L~~~G~d~I~~~Cg---t~~~~~~~l~~~~~VP-----v~~ss~~~v~~l~~~~-~~~~kIGILtt~~ 132 (245)
T PRK07475 62 SLLDAFVAAARELEAEGVRAITTSCG---FLALFQRELAAALGVP-----VATSSLLQVPLIQALL-PAGQKVGILTADA 132 (245)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEechH---HHHHHHHHHHHHcCCC-----EeccHHHHHHHHHHhc-cCCCeEEEEeCCc
Confidence 34555678999999999988777763 3455566665 47774 5666666666666542 2246777666543
Q ss_pred ---HHHHHHHcCCe
Q 022757 104 ---ILKELELAGFQ 114 (292)
Q Consensus 104 ---~~~~l~~~g~~ 114 (292)
..+.++..|++
T Consensus 133 t~l~~~~l~~~Gi~ 146 (245)
T PRK07475 133 SSLTPAHLLAVGVP 146 (245)
T ss_pred hhhhHHHHHhCCCC
Confidence 34567777875
No 384
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=31.91 E-value=74 Score=24.73 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHCCCcEEEEeCCCCCCHHH
Q 022757 28 DGVPETLDMLRSKGKRLVFVTNNSTKSRKQ 57 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~ 57 (292)
+...++++.++++|.+++.+|++..-+...
T Consensus 89 ~~~i~~~~~ak~~g~~iI~IT~~~~s~la~ 118 (179)
T cd05005 89 SSVVNAAEKAKKAGAKVVLITSNPDSPLAK 118 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCchHH
Confidence 445688999999999999999966555444
No 385
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=31.83 E-value=2.5e+02 Score=21.98 Aligned_cols=75 Identities=12% Similarity=0.235 Sum_probs=45.8
Q ss_pred HHHHHHHHHHCCCcEEE----EeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCCCCCCeEEEEcChhHH
Q 022757 30 VPETLDMLRSKGKRLVF----VTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGIL 105 (292)
Q Consensus 30 a~eal~~L~~~G~~~~~----~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~ 105 (292)
-++-++.|++.|+.+++ +.|-+ ..+...+++.+- +.++.|++...-...-.+++++..-.++|.+.+..+.
T Consensus 37 ik~ivk~lK~~gK~vfiHvDLv~Gl~--~~e~~i~fi~~~---~~pdGIISTk~~~i~~Akk~~~~aIqR~FilDS~Al~ 111 (181)
T COG1954 37 IKEIVKKLKNRGKTVFIHVDLVEGLS--NDEVAIEFIKEV---IKPDGIISTKSNVIKKAKKLGILAIQRLFILDSIALE 111 (181)
T ss_pred HHHHHHHHHhCCcEEEEEeHHhcccC--CchHHHHHHHHh---ccCCeeEEccHHHHHHHHHcCCceeeeeeeecHHHHH
Confidence 66778888999987654 44422 122233444332 2346778777666666677776555678888777766
Q ss_pred HHHH
Q 022757 106 KELE 109 (292)
Q Consensus 106 ~~l~ 109 (292)
+.+.
T Consensus 112 ~~~~ 115 (181)
T COG1954 112 KGIK 115 (181)
T ss_pred HHHH
Confidence 5543
No 386
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=31.81 E-value=92 Score=28.13 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=31.3
Q ss_pred HHHHHHHHHCCC-----cEEEEe-CCC------CCCHHHHHHHHHcCCCCCCCCceechH--------HHHHHHHHhcCC
Q 022757 31 PETLDMLRSKGK-----RLVFVT-NNS------TKSRKQYGKKFETLGLTVTEEEIFASS--------FAAAAYLKSIDF 90 (292)
Q Consensus 31 ~eal~~L~~~G~-----~~~~~T-n~s------~r~~~~~~~~l~~lG~~~~~~~i~~~~--------~~~~~~l~~~~~ 90 (292)
.++|+.|.+.|+ +.++.| ||. .+.-.+++++|++-|.|. -|++|. ..+.+.+++.++
T Consensus 289 lD~LreLekEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDA---VILTstCgtC~r~~a~m~keiE~~Gi 365 (431)
T TIGR01918 289 VDVLRDYEKEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDA---VILTSTUGTCTRCGATMVKEIERAGI 365 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCE---EEEcCCCCcchhHHHHHHHHHHHcCC
Confidence 467777777774 233333 221 133355677777777762 233332 334556766666
Q ss_pred C
Q 022757 91 P 91 (292)
Q Consensus 91 ~ 91 (292)
|
T Consensus 366 P 366 (431)
T TIGR01918 366 P 366 (431)
T ss_pred C
Confidence 5
No 387
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=31.79 E-value=3.3e+02 Score=25.14 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=25.7
Q ss_pred CCCcEEEECCCchhhH---HHHHhcCCeEEEEecCCCChh
Q 022757 227 QKSQICMVGDRLDTDI---LFGQNGGCKTLLVLSGVTSLS 263 (292)
Q Consensus 227 ~~~~~~~iGD~l~~Di---~~a~~aG~~~i~V~~G~~~~~ 263 (292)
.-+++.++||+ ..=+ .+..++||..+.+.++.+..+
T Consensus 313 ~GKrvai~Gdp-~~~i~LarfL~elGmevV~vgt~~~~~~ 351 (457)
T CHL00073 313 RGKSVFFMGDN-LLEISLARFLIRCGMIVYEIGIPYMDKR 351 (457)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHCCCEEEEEEeCCCChh
Confidence 44578899994 2333 455679999999988876544
No 388
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=31.65 E-value=50 Score=22.67 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=31.3
Q ss_pred ceeEEEeeeee-eeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 10 RLSFLTVMVII-WKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 10 k~i~fDiDGtL-~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+.+++|+-++- +|+.. +.--.+..+.++++|+.+.+. | ....+.+.+...|+.
T Consensus 42 ~~lilD~~~v~~iDss~-~~~L~~~~~~~~~~~~~~~l~-~----~~~~~~~~l~~~g~~ 95 (107)
T cd07042 42 KVVILDLSAVNFIDSTA-AEALEELVKDLRKRGVELYLA-G----LNPQVRELLERAGLL 95 (107)
T ss_pred eEEEEECCCCchhhHHH-HHHHHHHHHHHHHCCCEEEEe-c----CCHHHHHHHHHcCcH
Confidence 56778877763 33221 111235667777888777655 5 223667777777774
No 389
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=31.59 E-value=4.5e+02 Score=24.77 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=22.2
Q ss_pred EEEECCCchhhHHHHHhcCCeEEEEecC
Q 022757 231 ICMVGDRLDTDILFGQNGGCKTLLVLSG 258 (292)
Q Consensus 231 ~~~iGD~l~~Di~~a~~aG~~~i~V~~G 258 (292)
-++|||.+ . ...|+++|+.++++.+|
T Consensus 147 ~~viG~~~-~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 147 GAVVGAGL-I-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred CEEECChH-H-HHHHHHcCCceEEEecH
Confidence 47889995 4 67899999999999886
No 390
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=31.58 E-value=36 Score=28.74 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=20.5
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEeCCC
Q 022757 26 LIDGVPETLDMLRSKGKRLVFVTNNS 51 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~~~~~Tn~s 51 (292)
.+++..++++.|+++|. ..++||..
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d 168 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRD 168 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCC
Confidence 36778899999999887 68899944
No 391
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=31.21 E-value=89 Score=26.04 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=40.2
Q ss_pred HHHHHHHcCCCCCcEEEECCC----chhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHh
Q 022757 217 MDYLANKFGIQKSQICMVGDR----LDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 290 (292)
Q Consensus 217 ~~~~~~~lgi~~~~~~~iGD~----l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~ 290 (292)
=..+++.++++ +++-=|| ...=+++|+++|+..+.|..... ..+..++.+++++.+.+.+
T Consensus 186 n~al~~~~~i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~-----------~~~~~~~~~~~e~l~~l~~ 249 (249)
T PF02571_consen 186 NRALFRQYGID---VLVTKESGGSGFDEKIEAARELGIPVIVIKRPPE-----------PYGDPVVETIEELLDWLEQ 249 (249)
T ss_pred HHHHHHHcCCC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCC-----------CCCCcccCCHHHHHHHHhC
Confidence 34566778874 4444332 23458899999999999975422 1355668999999988753
No 392
>PLN02512 acetylglutamate kinase
Probab=31.21 E-value=98 Score=26.71 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=39.9
Q ss_pred ceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 10 RLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 10 k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
|.+++=+.|.++..........+.+..|++.|.+++++-|. ..+..+.++++|++
T Consensus 48 ~tiVIKlGGs~i~d~~~~~~~~~di~~l~~~g~~iVlVHGg----G~~i~~~~~~~gi~ 102 (309)
T PLN02512 48 KTVVVKYGGAAMKDPELKAGVIRDLVLLSCVGLRPVLVHGG----GPEINSWLKKVGIE 102 (309)
T ss_pred CeEEEEECCeeccChhHHHHHHHHHHHHHHCCCCEEEEECC----cHHHHHHHHHcCCC
Confidence 66888899998865544444566677889999999888883 23556667777775
No 393
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=31.10 E-value=1.3e+02 Score=24.16 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=41.5
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCch-hhHHHHHh-cCCeEEEEecCCCC
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLD-TDILFGQN-GGCKTLLVLSGVTS 261 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~-~Di~~a~~-aG~~~i~V~~G~~~ 261 (292)
|.-+...+++.++.+.-+-+=.+.-||-+. +|-+..++ .|.+.+.|.||.+-
T Consensus 23 GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~C 76 (202)
T COG0378 23 GSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGC 76 (202)
T ss_pred CcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCcc
Confidence 444567777888888666666888999875 79999999 99999999999544
No 394
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=31.07 E-value=1.4e+02 Score=21.79 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=28.8
Q ss_pred eeEEEeeeee-eeCC---c----cCCCHHHHHHHHHHCCCcEEEEeC
Q 022757 11 LSFLTVMVII-WKGD---K----LIDGVPETLDMLRSKGKRLVFVTN 49 (292)
Q Consensus 11 ~i~fDiDGtL-~~~~---~----~i~~a~eal~~L~~~G~~~~~~Tn 49 (292)
.+||-+||+- +.-. + ..|...+.++.++++|+++++++-
T Consensus 37 ~iF~t~dG~~l~~K~~~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~ 83 (120)
T COG2044 37 TIFFTMDGVTLVKKKVAEKIKHPNFPPLEELIKQAIEAGVKIYVCEQ 83 (120)
T ss_pred EEEEEeccceeeeecchhhhcCCCCCCHHHHHHHHHHcCCEEEEEcc
Confidence 5899999984 4311 1 124467999999999999988876
No 395
>PRK13937 phosphoheptose isomerase; Provisional
Probab=31.07 E-value=97 Score=24.42 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHCCCcEEEEeCCC
Q 022757 28 DGVPETLDMLRSKGKRLVFVTNNS 51 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~~~~~Tn~s 51 (292)
+...++++.++++|.+++.+|++.
T Consensus 120 ~~~~~~~~~ak~~g~~~I~iT~~~ 143 (188)
T PRK13937 120 PNVLAALEKARELGMKTIGLTGRD 143 (188)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCC
Confidence 445677788888888888888744
No 396
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=31.02 E-value=98 Score=27.88 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=31.2
Q ss_pred HHHHHHHCCCcEEEEeCCC---CCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCCC
Q 022757 33 TLDMLRSKGKRLVFVTNNS---TKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFP 91 (292)
Q Consensus 33 al~~L~~~G~~~~~~Tn~s---~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~~ 91 (292)
..+.+++.|+++.-.+-.+ .++.....+.|++.|++......+++...+..++++.++|
T Consensus 80 ~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~g~P 141 (423)
T TIGR00877 80 LVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDPEEALSYIQEKGAP 141 (423)
T ss_pred HHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcCCC
Confidence 3455666676643111100 1233334555677787766556666666566666655554
No 397
>PTZ00124 adenosine deaminase; Provisional
Probab=30.52 E-value=2.4e+02 Score=25.02 Aligned_cols=83 Identities=8% Similarity=0.053 Sum_probs=48.3
Q ss_pred ceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCC--CCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHh
Q 022757 10 RLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNST--KSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKS 87 (292)
Q Consensus 10 k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~--r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~ 87 (292)
+.+-||++|- .. ..+.-.++++.+++.|+++.+-.|.+. .+..++.+.+..+|.+ +
T Consensus 192 ~vvGiDLaG~---E~-~~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~------------------R 249 (362)
T PTZ00124 192 DFVGFDHAGH---EV-DLKPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVK------------------R 249 (362)
T ss_pred CeEEEeccCC---CC-CcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCC------------------c
Confidence 3788888883 11 133356888889999999888888542 1223344444444432 1
Q ss_pred cCCCCCCeEEEEcChhHHHHHHHcCCeecCC
Q 022757 88 IDFPKDKKVYVVGEDGILKELELAGFQYLGG 118 (292)
Q Consensus 88 ~~~~~~~~~~~~g~~~~~~~l~~~g~~~~~~ 118 (292)
.+ +-+.......+.+.+.+.++.+..+
T Consensus 250 IG----HG~~~~~d~~l~~~l~~~~I~lEvC 276 (362)
T PTZ00124 250 IG----HGIRVAESQELIDMVKEKDILLEVC 276 (362)
T ss_pred cc----cccccCCCHHHHHHHHHcCCeEEEC
Confidence 11 1133344566777777777776543
No 398
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=30.35 E-value=1.1e+02 Score=27.59 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=30.0
Q ss_pred HHHHHHCCCcEEEEeCCC---CCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCC
Q 022757 34 LDMLRSKGKRLVFVTNNS---TKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDF 90 (292)
Q Consensus 34 l~~L~~~G~~~~~~Tn~s---~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~ 90 (292)
.+.+++.|++++-.+-.+ .++.....+.|++.|++.+....+.+...+..++++.++
T Consensus 79 ~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~ 138 (420)
T PRK00885 79 VDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDAEEALAYLDEKGA 138 (420)
T ss_pred HHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCC
Confidence 445666777643111100 112233445667788876665666666655566655554
No 399
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=30.34 E-value=68 Score=28.48 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=36.6
Q ss_pred hceeEEEeeee---eee---CC-ccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHH---HHHHHHHcCCCC
Q 022757 9 LRLSFLTVMVI---IWK---GD-KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRK---QYGKKFETLGLT 68 (292)
Q Consensus 9 ~k~i~fDiDGt---L~~---~~-~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~---~~~~~l~~lG~~ 68 (292)
+..|.+.+||. .++ +. ..+..+.++++.|++.|+++.+.+--+..+.. ++.+.+.++|++
T Consensus 115 ~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~ 184 (378)
T PRK05301 115 LDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGAD 184 (378)
T ss_pred CCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCCC
Confidence 45688899985 222 22 13334568899999999887554322223343 445566778875
No 400
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=30.34 E-value=63 Score=27.46 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCC
Q 022757 30 VPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLG 66 (292)
Q Consensus 30 a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG 66 (292)
-.+++++|++.|+++..+. ...+.+.+..+++.+|
T Consensus 111 P~~vl~qLraagV~vv~v~--~~~~~~~i~~~Ir~vg 145 (300)
T COG4558 111 PATVLDQLRAAGVPVVTVP--EQPTLDGIGTKIRQVG 145 (300)
T ss_pred cHHHHHHHHHcCCcEEEcC--CCCCHHHHHHHHHHHH
Confidence 3478999999999987777 5678888888887765
No 401
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=30.22 E-value=82 Score=26.80 Aligned_cols=55 Identities=15% Similarity=0.148 Sum_probs=40.6
Q ss_pred ceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 10 RLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 10 k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
|.+++=+.|-++......+...+-+..|+..|++++++-| ...++.+.++++|++
T Consensus 24 ~~~VIk~gG~~~~~~~l~~~~~~di~~l~~~g~~~VlVHG----gg~~i~~~~~~~g~~ 78 (284)
T CHL00202 24 RIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKIVVVHG----GGPEINFWLKQLNIS 78 (284)
T ss_pred CeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCcEEEEeC----CcHHHHHHHHHCCCC
Confidence 4677888887775544344456778889999999999999 445566677777875
No 402
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=30.16 E-value=1.3e+02 Score=24.65 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=27.9
Q ss_pred eeeeeeCCccC--CCH-HHHHHHHHHCCCcEEEEeCCCCC
Q 022757 17 MVIIWKGDKLI--DGV-PETLDMLRSKGKRLVFVTNNSTK 53 (292)
Q Consensus 17 DGtL~~~~~~i--~~a-~eal~~L~~~G~~~~~~Tn~s~r 53 (292)
+|+-+.|+.+. ++. .+.++.+++.|+++.+.||.+..
T Consensus 72 ~~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~ 111 (246)
T PRK11145 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVR 111 (246)
T ss_pred CeEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 47666666654 343 48899999999999999997754
No 403
>PRK11660 putative transporter; Provisional
Probab=30.06 E-value=83 Score=29.81 Aligned_cols=72 Identities=15% Similarity=0.061 Sum_probs=41.5
Q ss_pred hhceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC--CCCCceechHHHHHHHH
Q 022757 8 LLRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT--VTEEEIFASSFAAAAYL 85 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~--~~~~~i~~~~~~~~~~l 85 (292)
..+.+++|+.++-.-....+..-.+..+++++ |.++.++. ...++.+.++..|+. .....++.+.+.+.+..
T Consensus 490 ~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~-----l~~~v~~~l~~~gl~~~~~~~~if~~~~~Al~~~ 563 (568)
T PRK11660 490 GKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICN-----LQFQPLRTLARAGIQPIPGRLAFYPTLREALADL 563 (568)
T ss_pred CCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEec-----CChHHHHHHHHCCChhhcCcccccCCHHHHHHHH
Confidence 46788899888754221122223466777888 88765554 234567788877774 22345555554444333
No 404
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=29.87 E-value=2e+02 Score=21.71 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=3.8
Q ss_pred HHHHHHHCC
Q 022757 33 TLDMLRSKG 41 (292)
Q Consensus 33 al~~L~~~G 41 (292)
+-+.|+..|
T Consensus 111 a~~~L~~aG 119 (143)
T PF10662_consen 111 AKKWLKNAG 119 (143)
T ss_pred HHHHHHHcC
Confidence 334444444
No 405
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=29.57 E-value=47 Score=24.24 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=23.0
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 30 VPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 30 a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
....-+.|+++|+.|.++|+ .. +.+..+..|++
T Consensus 15 ~lala~~L~~rGh~V~~~~~---~~---~~~~v~~~Gl~ 47 (139)
T PF03033_consen 15 FLALARALRRRGHEVRLATP---PD---FRERVEAAGLE 47 (139)
T ss_dssp HHHHHHHHHHTT-EEEEEET---GG---GHHHHHHTT-E
T ss_pred HHHHHHHHhccCCeEEEeec---cc---ceecccccCce
Confidence 44567889999999999998 33 34455778876
No 406
>PLN02825 amino-acid N-acetyltransferase
Probab=29.54 E-value=87 Score=29.27 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=44.1
Q ss_pred hceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCC
Q 022757 9 LRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV 69 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~ 69 (292)
=|.+++=+.|-++... .++....-|..|+..|++++++-| ...++.+.++++|++.
T Consensus 17 gktfVIk~gG~~l~~~-~~~~l~~DialL~~lGi~~VlVHG----ggpqI~~~l~~~gi~~ 72 (515)
T PLN02825 17 GSTFVVVISGEVVAGP-HLDNILQDISLLHGLGIKFVLVPG----THVQIDKLLAERGREP 72 (515)
T ss_pred CCEEEEEECchhhcCc-hHHHHHHHHHHHHHCCCCEEEEcC----CCHHHHHHHHHcCCCc
Confidence 3567777888877544 345556778889999999999999 6788889999999874
No 407
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=29.51 E-value=30 Score=28.76 Aligned_cols=21 Identities=19% Similarity=0.514 Sum_probs=16.1
Q ss_pred CCCcEEEECCCchhhHHHHHhc
Q 022757 227 QKSQICMVGDRLDTDILFGQNG 248 (292)
Q Consensus 227 ~~~~~~~iGD~l~~Di~~a~~a 248 (292)
.+.+++..||++ .|+.|+.-+
T Consensus 178 ~R~NvlLlGDsl-gD~~Ma~G~ 198 (246)
T PF05822_consen 178 KRTNVLLLGDSL-GDLHMADGV 198 (246)
T ss_dssp T--EEEEEESSS-GGGGTTTT-
T ss_pred cCCcEEEecCcc-CChHhhcCC
Confidence 567899999996 999999755
No 408
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.47 E-value=99 Score=26.54 Aligned_cols=42 Identities=10% Similarity=-0.118 Sum_probs=31.7
Q ss_pred hceeEEEee-----eeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCC
Q 022757 9 LRLSFLTVM-----VIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNN 50 (292)
Q Consensus 9 ~k~i~fDiD-----GtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~ 50 (292)
...|.+|++ |...-.....|+..+.++.|+++|+++++..+.
T Consensus 46 ~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 46 NGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred CCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 457888875 554333346888899999999999998887664
No 409
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=29.43 E-value=69 Score=26.97 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=31.7
Q ss_pred ChhhhhhhhceeEEEeeeeeee-CCc-----cCCCHHHHHHHHHHCCCcEEEE-eC
Q 022757 1 MLMSLLTLLRLSFLTVMVIIWK-GDK-----LIDGVPETLDMLRSKGKRLVFV-TN 49 (292)
Q Consensus 1 ~~m~~~~~~k~i~fDiDGtL~~-~~~-----~i~~a~eal~~L~~~G~~~~~~-Tn 49 (292)
|+...++..+.++.=+-|+++. .+. .+....+.+..+++.|++++++ |+
T Consensus 1 ~~~~~~~~~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sg 56 (266)
T PRK12314 1 MMRRQLENAKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSG 56 (266)
T ss_pred ChhhhHhhCCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeC
Confidence 3344344457788888898875 222 2333456777788899998886 54
No 410
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=29.30 E-value=1.1e+02 Score=26.21 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=26.7
Q ss_pred cCCCHHHHHHHHHHCC-CcEEEEeCCCCCCHHHHHHHHH
Q 022757 26 LIDGVPETLDMLRSKG-KRLVFVTNNSTKSRKQYGKKFE 63 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G-~~~~~~Tn~s~r~~~~~~~~l~ 63 (292)
.+|.-.+.++.+++.| ++++++||++. +++.+.|.
T Consensus 93 Ly~~L~elI~~~k~~g~~~tflvTNgsl---pdv~~~L~ 128 (296)
T COG0731 93 LYPNLGELIEEIKKRGKKTTFLVTNGSL---PDVLEELK 128 (296)
T ss_pred cccCHHHHHHHHHhcCCceEEEEeCCCh---HHHHHHhc
Confidence 3477789999999999 79999999553 55555544
No 411
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=29.29 E-value=1.2e+02 Score=24.09 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHCCCcEEEEeCCCCCC
Q 022757 28 DGVPETLDMLRSKGKRLVFVTNNSTKS 54 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~~~~~Tn~s~r~ 54 (292)
+...++++.++++|.+++.+|++...+
T Consensus 125 ~~~i~~~~~ak~~g~~iI~iT~~~~s~ 151 (192)
T PRK00414 125 GNIIKAIEAARAKGMKVITLTGKDGGK 151 (192)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 445677788888888888888754433
No 412
>PRK04531 acetylglutamate kinase; Provisional
Probab=29.21 E-value=74 Score=28.61 Aligned_cols=55 Identities=16% Similarity=0.347 Sum_probs=43.7
Q ss_pred hceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCC
Q 022757 9 LRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV 69 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~ 69 (292)
+|.+++=+.|-++... .+.....|..|.+.|++++++-| ...++.+.+..+|++.
T Consensus 36 ~~~~VIKiGG~~l~~~--~~~l~~dla~L~~~G~~~VlVHG----ggpqI~~~l~~~gie~ 90 (398)
T PRK04531 36 ERFAVIKVGGAVLRDD--LEALASSLSFLQEVGLTPIVVHG----AGPQLDAELDAAGIEK 90 (398)
T ss_pred CcEEEEEEChHHhhcC--HHHHHHHHHHHHHCCCcEEEEEC----CCHHHHHHHHHcCCCc
Confidence 4678889999887632 34456788999999999999999 4577788899999874
No 413
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=29.00 E-value=47 Score=27.31 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCCC-CCCCceechHHHHHHHHHhcCCCCCCeEEEEcChhHHHHHHHc
Q 022757 56 KQYGKKFETLGLT-VTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELA 111 (292)
Q Consensus 56 ~~~~~~l~~lG~~-~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~ 111 (292)
..-++.|+.+|.| +++++++|++....+.-+ ..| ...|+.|...+-+.+++-
T Consensus 89 ~~EA~iLealgVD~IDESEVLTPAD~~~Hi~K-~~F---tVPFVcGarnLgEAlRRI 141 (296)
T COG0214 89 FVEAQILEALGVDMIDESEVLTPADEEFHINK-WKF---TVPFVCGARNLGEALRRI 141 (296)
T ss_pred hHHHHHHHHhCCCccccccccCCCchhhhcch-hhc---ccceecCcCcHHHHHHHH
Confidence 3346678899999 889999999876554333 223 235788888888887753
No 414
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=28.99 E-value=1.1e+02 Score=22.07 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=28.8
Q ss_pred HHHHHHHHHHCCCcEEEE-eCCCCCCHHHHHHHHHcCCCC
Q 022757 30 VPETLDMLRSKGKRLVFV-TNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 30 a~eal~~L~~~G~~~~~~-Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
++.|.+.|+++|+.+-++ --..+.+.+++.+.+..+|..
T Consensus 14 ~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~ 53 (117)
T COG1393 14 CRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDG 53 (117)
T ss_pred HHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCcc
Confidence 568999999999987322 111237888999999988864
No 415
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=28.96 E-value=2.7e+02 Score=21.51 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHc---CCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCC
Q 022757 213 STFMMDYLANKF---GIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGV 259 (292)
Q Consensus 213 ~~~~~~~~~~~l---gi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~ 259 (292)
++.=+..+++++ |++ +.||+.. . ...|++.|++++++.+|.
T Consensus 110 ~~~e~~~~i~~~~~~G~~----viVGg~~-~-~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 110 SEEEIEAAIKQAKAEGVD----VIVGGGV-V-CRLARKLGLPGVLIESGE 153 (176)
T ss_dssp SHHHHHHHHHHHHHTT------EEEESHH-H-HHHHHHTTSEEEESS--H
T ss_pred CHHHHHHHHHHHHHcCCc----EEECCHH-H-HHHHHHcCCcEEEEEecH
Confidence 344455555554 654 8899984 3 789999999999998764
No 416
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=28.92 E-value=99 Score=23.13 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=21.5
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCC
Q 022757 30 VPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV 69 (292)
Q Consensus 30 a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~ 69 (292)
+.++|.....+.-.++++|| ..++.+++++.|+++
T Consensus 86 aDe~i~~~a~~~~~~iVaTn-----D~eLk~rlr~~GIPv 120 (136)
T COG1412 86 ADECLLEAALKHGRYIVATN-----DKELKRRLRENGIPV 120 (136)
T ss_pred hHHHHHHHHHHcCCEEEEeC-----CHHHHHHHHHcCCCE
Confidence 45555554333336788888 456677777778763
No 417
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=28.91 E-value=53 Score=27.32 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=45.2
Q ss_pred EEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCC
Q 022757 13 FLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDF 90 (292)
Q Consensus 13 ~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~ 90 (292)
++|+=||==|+.+.+.=+.-+.--+.+.|++|+...|.+.-+.....+.|+.+|++++ .+...+.+.+++.++
T Consensus 3 ~~D~~gTGGd~~~t~niSt~~a~vlAa~G~~V~kHG~r~~~~~~Gs~dvLe~LGv~~~-----~~~~~~~~~l~~~g~ 75 (252)
T PF00591_consen 3 VVDICGTGGDGDKTFNISTAAAIVLAAAGVPVAKHGNRGVTSKSGSADVLEALGVPID-----LSPEEAQAQLEETGI 75 (252)
T ss_dssp EEEEEESSCSSSTBHHHHHHHHHHHHHTTSEEEEEEESGCTTSSSHHHHHHHSTB-TT-------HHHHHHHHHHHSE
T ss_pred ceEEecCCCCCCCceehHHHHHHHHHccCCcEecccCCCccccccHHHHHHhcCCCcC-----CCHHHHHHHhhccCe
Confidence 5788888555555432122233345678999999999665444556788999999763 233455666776643
No 418
>COG3785 Uncharacterized conserved protein [Function unknown]
Probab=28.88 E-value=25 Score=24.64 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=27.5
Q ss_pred hhceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeC
Q 022757 8 LLRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTN 49 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn 49 (292)
.+++|+||+|=.--++..++....+-++-+|++-.--.++-|
T Consensus 27 pfrGVV~DvDPeyanteew~~~ip~~~rp~rdqPfYHllaEn 68 (116)
T COG3785 27 PFRGVVFDVDPEYANTEEWPDEIPVNIRPLRDQPFYHLLAEN 68 (116)
T ss_pred ccceEEEecCcccccCccChhhccccccccccCCceeeeeec
Confidence 478999999988777766655444445566665443445555
No 419
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=28.78 E-value=2.5e+02 Score=20.91 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHCCCc--EEEEeCCCC---CCHHHHHHHHHcCCCC
Q 022757 28 DGVPETLDMLRSKGKR--LVFVTNNST---KSRKQYGKKFETLGLT 68 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~--~~~~Tn~s~---r~~~~~~~~l~~lG~~ 68 (292)
+.+.+.+++|+++|.+ .+++-|+.. -.+.+..+.++++|++
T Consensus 69 ~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~ 114 (137)
T PRK02261 69 IDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFD 114 (137)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCC
Confidence 3355666666666431 233444221 1245555666777763
No 420
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=28.77 E-value=1.5e+02 Score=26.68 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=28.4
Q ss_pred CCCCcEEEECCCchhhHHHH---HhcCCeEEEEecCCCChhh
Q 022757 226 IQKSQICMVGDRLDTDILFG---QNGGCKTLLVLSGVTSLSM 264 (292)
Q Consensus 226 i~~~~~~~iGD~l~~Di~~a---~~aG~~~i~V~~G~~~~~~ 264 (292)
+.-++++++||. ..=+.++ ...||..+.+.++....++
T Consensus 272 l~Gkrv~i~gd~-~~~~~l~~~L~elGm~~v~~~t~~~~~~~ 312 (407)
T TIGR01279 272 LRGKKIFFFGDN-LLELPLARFLKRCGMEVVECGTPYIHRRF 312 (407)
T ss_pred cCCCEEEEECCc-hHHHHHHHHHHHCCCEEEEecCCCCChHH
Confidence 455688999997 4555444 6799999999998876544
No 421
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=28.58 E-value=96 Score=22.68 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=26.1
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 31 PETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 31 ~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
..+.+.|+++|+.+++++| ..+.. ...|+..|++
T Consensus 55 ~~~a~~l~~~gvdvvi~~~---iG~~a-~~~l~~~GIk 88 (121)
T COG1433 55 IRIAELLVDEGVDVVIASN---IGPNA-YNALKAAGIK 88 (121)
T ss_pred HHHHHHHHHcCCCEEEECc---cCHHH-HHHHHHcCcE
Confidence 4678899999999999999 44333 4567888886
No 422
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=28.51 E-value=3.7e+02 Score=22.79 Aligned_cols=90 Identities=7% Similarity=-0.080 Sum_probs=45.7
Q ss_pred CcCHHHHHHHHHHHHcCCCcEEEEecCCcccccCCCCcccCcchHHHHHHhccCCCc--eeecCCcHHHHHHHHHHcCCC
Q 022757 150 YFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREP--LVVGKPSTFMMDYLANKFGIQ 227 (292)
Q Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~gKP~~~~~~~~~~~lgi~ 227 (292)
...++...++++.|++.....++.||.....+.. +...+....+.+. ..+- .+.......+++. .+
T Consensus 23 ~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~----------~~~~L~~~~~~~~~~~~i~-TS~~at~~~l~~~-~~ 90 (269)
T COG0647 23 NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREV----------VAARLSSLGGVDVTPDDIV-TSGDATADYLAKQ-KP 90 (269)
T ss_pred CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHH----------HHHHHHhhcCCCCCHHHee-cHHHHHHHHHHhh-CC
Confidence 3456777888888887444456678887754321 1111111011100 0000 1112222222221 23
Q ss_pred CCcEEEECCCchhhHHHHHhcCCeEE
Q 022757 228 KSQICMVGDRLDTDILFGQNGGCKTL 253 (292)
Q Consensus 228 ~~~~~~iGD~l~~Di~~a~~aG~~~i 253 (292)
+..|++||.. .+.+..+.+|+..+
T Consensus 91 ~~kv~viG~~--~l~~~l~~~G~~~~ 114 (269)
T COG0647 91 GKKVYVIGEE--GLKEELEGAGFELV 114 (269)
T ss_pred CCEEEEECCc--chHHHHHhCCcEEe
Confidence 3789999965 77888888885443
No 423
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=28.10 E-value=1.5e+02 Score=21.40 Aligned_cols=18 Identities=6% Similarity=0.124 Sum_probs=8.8
Q ss_pred HHHHHHHHCCCcEEEEeC
Q 022757 32 ETLDMLRSKGKRLVFVTN 49 (292)
Q Consensus 32 eal~~L~~~G~~~~~~Tn 49 (292)
+.++...+.+-.++.+|.
T Consensus 41 ~~~~~a~~~~~d~V~iS~ 58 (122)
T cd02071 41 EIVEAAIQEDVDVIGLSS 58 (122)
T ss_pred HHHHHHHHcCCCEEEEcc
Confidence 444445555544544444
No 424
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=28.07 E-value=77 Score=21.32 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=23.8
Q ss_pred cCCCHHHHHHHHHHCCCc-EEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 26 LIDGVPETLDMLRSKGKR-LVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 26 ~i~~a~eal~~L~~~G~~-~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.+.|..+.++.+++.... +++++|.+.++...+...-+..+++
T Consensus 9 lv~G~~~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vp 52 (82)
T PRK13601 9 RVVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIK 52 (82)
T ss_pred EEEchHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCC
Confidence 456778889998865555 4555553333333333333445554
No 425
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=28.05 E-value=1e+02 Score=25.95 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=28.2
Q ss_pred chhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHH
Q 022757 238 LDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 289 (292)
Q Consensus 238 l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~ 289 (292)
+..++..++.+|++.+++.+|...... . ..+.-..++-.+|.+++.
T Consensus 75 l~~~L~~~~~~Gi~nvL~l~GD~~~~~----~--~~~~~~f~~a~~Li~~i~ 120 (272)
T TIGR00676 75 IREILREYRELGIRHILALRGDPPKGE----G--TPTPGGFNYASELVEFIR 120 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCCCC----C--CCCCCCCCCHHHHHHHHH
Confidence 456778889999999999888655321 0 122223445556666554
No 426
>PLN02641 anthranilate phosphoribosyltransferase
Probab=27.93 E-value=1.8e+02 Score=25.66 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=47.4
Q ss_pred EEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCC
Q 022757 13 FLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDF 90 (292)
Q Consensus 13 ~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~ 90 (292)
.+|+=||=.|+.+.++=..-+.--+...|++|+..-|.+.-+.....+.|+.+|+++. .+...+.+.+++.++
T Consensus 75 ~~D~~gtGGdg~~t~nist~aa~v~A~~G~~V~kHGnr~~ss~~GsaDvLeaLGi~~~-----~~~~~~~~~l~~~g~ 147 (343)
T PLN02641 75 AVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSADVLEALGVAID-----LGPEGVKRCVEEVGI 147 (343)
T ss_pred CCceeCCCCCCCCccccHHHHHHHHHhCCCeEEEeCCCCCCCccCHHHHHHHcCCCCC-----CCHHHHHHHHHhcCc
Confidence 4566677666665443222333345778999999988666666667888999999653 233555667776654
No 427
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=27.92 E-value=1.1e+02 Score=25.61 Aligned_cols=40 Identities=15% Similarity=0.084 Sum_probs=26.6
Q ss_pred hhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHh
Q 022757 240 TDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 290 (292)
Q Consensus 240 ~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~ 290 (292)
.=+++|++.|+..+.|....- ..|..++.+++++.+.+.+
T Consensus 214 eKi~AA~~lgi~vivI~RP~~-----------~~~~~~~~~~~el~~~l~~ 253 (256)
T TIGR00715 214 EKVKAAEALGINVIRIARPQT-----------IPGVAIFDDISQLNQFVAR 253 (256)
T ss_pred HHHHHHHHcCCcEEEEeCCCC-----------CCCCccCCCHHHHHHHHHH
Confidence 446777777777777754311 1345678999999987765
No 428
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=27.74 E-value=3.9e+02 Score=22.82 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=32.7
Q ss_pred eeecCCcHHH--HHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhh
Q 022757 207 LVVGKPSTFM--MDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSM 264 (292)
Q Consensus 207 ~~~gKP~~~~--~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~ 264 (292)
+.-||-+.+. +..+++..+. ++++|.+- .|+..-.-.|.++|+|..|-+++++
T Consensus 215 VIGg~~SsNT~kL~eia~~~~~---~t~~Ie~~--~el~~~~l~~~~~VGItaGASTP~~ 269 (281)
T PF02401_consen 215 VIGGKNSSNTRKLAEIAKEHGK---PTYHIETA--DELDPEWLKGVKKVGITAGASTPDW 269 (281)
T ss_dssp EES-TT-HHHHHHHHHHHHCTT---CEEEESSG--GG--HHHHTT-SEEEEEE-TTS-HH
T ss_pred EecCCCCccHHHHHHHHHHhCC---CEEEeCCc--cccCHhHhCCCCEEEEEccCCCCHH
Confidence 4446666554 4455666665 69999986 7887766678889999999876544
No 429
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=27.67 E-value=1.3e+02 Score=20.72 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=34.8
Q ss_pred hceeEEEeeeeeeeCC--------ccCCC-HHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 9 LRLSFLTVMVIIWKGD--------KLIDG-VPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 9 ~k~i~fDiDGtL~~~~--------~~i~~-a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+..++-|-.|.+--+- +.+.- +...++.|.++|+|++.-+- ..-+...+.+..+|+.
T Consensus 11 VSW~lmdqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~---~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 11 VSWSLMDQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVD---EDNEASQRLSKSLGFI 76 (89)
T ss_pred eEEEEecccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehH---hccHHHHHHHHHCCCe
Confidence 4566777776664322 22211 23567888899999877665 4445555666778874
No 430
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=27.45 E-value=71 Score=19.71 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=14.1
Q ss_pred HHHHHHHHHHCCCcEEEEeC
Q 022757 30 VPETLDMLRSKGKRLVFVTN 49 (292)
Q Consensus 30 a~eal~~L~~~G~~~~~~Tn 49 (292)
-.++|+.|.+.|.++.+.|-
T Consensus 4 ~qegLr~L~~aG~~v~iM~~ 23 (55)
T PF05240_consen 4 YQEGLRRLCQAGAQVSIMTY 23 (55)
T ss_dssp HHHHHHHHHHTT-EEEE--H
T ss_pred HHHHHHHHHHCCCeEEecCc
Confidence 35889999999999877764
No 431
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=27.18 E-value=64 Score=22.53 Aligned_cols=23 Identities=35% Similarity=0.706 Sum_probs=17.4
Q ss_pred eeEEEeeeeeeeCCccCCCHHHHHHHHHH
Q 022757 11 LSFLTVMVIIWKGDKLIDGVPETLDMLRS 39 (292)
Q Consensus 11 ~i~fDiDGtL~~~~~~i~~a~eal~~L~~ 39 (292)
.++||.|+|+|- ||.|.++-|+-
T Consensus 6 ~v~~~~~~v~Wv------gaDEil~IL~l 28 (97)
T PF04512_consen 6 PVFFDVDMVLWV------GADEILSILRL 28 (97)
T ss_pred eEEEecCceEEe------cHHHHHHHhCC
Confidence 368888888885 58888877754
No 432
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.96 E-value=1.9e+02 Score=20.74 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=34.5
Q ss_pred HHH-HcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhh
Q 022757 220 LAN-KFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSM 264 (292)
Q Consensus 220 ~~~-~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~ 264 (292)
.++ ++|.. .++-++||=+.-=+...+++|+++..+..+......
T Consensus 41 lLR~r~gy~-GelRA~Gdvl~DQl~~l~R~GFdsf~l~~~~~~~~~ 85 (110)
T PF06073_consen 41 LLRERYGYT-GELRAVGDVLRDQLFYLRRCGFDSFELREDQDPEDA 85 (110)
T ss_pred HHHHHcCCC-CcEEEeccchHHHHHHHHHcCCCEEEeCCCCCHHHH
Confidence 455 88887 679999999855578899999999999876554333
No 433
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=26.91 E-value=1.2e+02 Score=25.62 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=38.8
Q ss_pred hhceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcE-EEEeCCCCCCHHHHHHHHHcCCCCC
Q 022757 8 LLRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRL-VFVTNNSTKSRKQYGKKFETLGLTV 69 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~-~~~Tn~s~r~~~~~~~~l~~lG~~~ 69 (292)
+.|+|+..+.|-+++-...-.|...|.++|.-+ .|. +=+.| ....+..+.|+..|+++
T Consensus 336 kVk~iLvNiFGGIVNCAtIANGiv~A~~kl~Ln-VPlVVRLEG---TNV~~A~~Ilk~SGLpI 394 (412)
T KOG1447|consen 336 KVKAILVNIFGGIVNCATIANGIVKACRKLELN-VPLVVRLEG---TNVQEAQKILKKSGLPI 394 (412)
T ss_pred ceeEEEEehhcceehhHhHhhHHHHHHHhhcCC-CcEEEEEcC---CCHHHHHHHHHhcCCce
Confidence 678999999998887655556666777666433 443 33444 34566677778888875
No 434
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=26.89 E-value=2.5e+02 Score=20.45 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=25.7
Q ss_pred eeEEEeeeeeeeCCccCCCH-HHHHHHHHHCCCcEEEEeCCC
Q 022757 11 LSFLTVMVIIWKGDKLIDGV-PETLDMLRSKGKRLVFVTNNS 51 (292)
Q Consensus 11 ~i~fDiDGtL~~~~~~i~~a-~eal~~L~~~G~~~~~~Tn~s 51 (292)
+.+|-++|.+--+ .+|. ...++-|.++|+.++.+|-.+
T Consensus 63 W~~lk~~gpf~Fg---ltGilasV~~pLsd~gigIFavStyd 101 (128)
T COG3603 63 WSCLKFEGPFDFG---LTGILASVSQPLSDNGIGIFAVSTYD 101 (128)
T ss_pred eEEEEEeccccCC---cchhhhhhhhhHhhCCccEEEEEecc
Confidence 5677777776433 3342 345788999999988777644
No 435
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=26.79 E-value=2.3e+02 Score=22.97 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=35.7
Q ss_pred ecCCcHHHHHHHHHHcCC-CCCcEEEECCCchhhHHHHHhcCCeEEEEe
Q 022757 209 VGKPSTFMMDYLANKFGI-QKSQICMVGDRLDTDILFGQNGGCKTLLVL 256 (292)
Q Consensus 209 ~gKP~~~~~~~~~~~lgi-~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~ 256 (292)
.++|+|..-.+.-+ +.. +..+++.+|-+...|.....+.|+.++.|-
T Consensus 19 ~~~p~~~L~~~~~~-~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD 66 (218)
T PRK13255 19 QEEVNPLLQKYWPA-LALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVE 66 (218)
T ss_pred CCCCCHHHHHHHHh-hCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEc
Confidence 37888887665433 333 346899999998889998888999988883
No 436
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=26.72 E-value=81 Score=29.24 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=25.1
Q ss_pred HHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecC
Q 022757 219 YLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSG 258 (292)
Q Consensus 219 ~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G 258 (292)
...+.+.-....+.|+||+ .||..+.+.|+ +.|..|
T Consensus 397 ~~v~~l~~~g~~v~~vGDg-~nD~~al~~Ad---vgia~~ 432 (499)
T TIGR01494 397 ALVEALQKKGRVVAMTGDG-VNDAPALKKAD---VGIAMG 432 (499)
T ss_pred HHHHHHHHCCCEEEEECCC-hhhHHHHHhCC---Cccccc
Confidence 3334333233679999999 59999999998 445555
No 437
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=26.71 E-value=17 Score=28.36 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=30.8
Q ss_pred CHHHHHHHHHcCCCC-CCCCceechHHHHHHHHHhcCCCCCCeEEEEcChhHHHHHHH
Q 022757 54 SRKQYGKKFETLGLT-VTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELEL 110 (292)
Q Consensus 54 ~~~~~~~~l~~lG~~-~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~ 110 (292)
.+.--++.|+.+|+| +++++++|++.... ++.++.| +..|+.|...+-+.|++
T Consensus 81 GHfvEAqiLealgVD~IDESEVLTpAD~~~-HI~K~~F---~vPFVcGarnLGEALRR 134 (208)
T PF01680_consen 81 GHFVEAQILEALGVDYIDESEVLTPADEEN-HIDKHNF---KVPFVCGARNLGEALRR 134 (208)
T ss_dssp T-HHHHHHHHHTT-SEEEEETTS--S-SS-----GGG----SS-EEEEESSHHHHHHH
T ss_pred ceeehhhhHHHhCCceeccccccccccccc-cccchhC---CCCeEecCCCHHHHHhh
Confidence 444457788999999 78888888876433 4444444 34578888888888765
No 438
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=26.63 E-value=48 Score=27.34 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=33.7
Q ss_pred EEeeeeeeeCCc-cCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 14 LTVMVIIWKGDK-LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 14 fDiDGtL~~~~~-~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
||-|=+++-|.+ ..||...|=+.|.+.|+|++++|...+.. ..+.|+..||-
T Consensus 58 ~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k---~kd~l~~~g~G 110 (276)
T PF01993_consen 58 WDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK---AKDALEEEGFG 110 (276)
T ss_dssp H--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG---GHHHHHHTT-E
T ss_pred hCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh---hHHHHHhcCCc
Confidence 466777776654 46888888889999999999999844333 34677776663
No 439
>cd01037 Restriction_endonuclease_like Superfamily of nucleases including Short Patch Repair (Vsr) Endonucleases, archaeal Holliday junction resolvases, MutH methy-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI
Probab=26.45 E-value=1.2e+02 Score=18.83 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=25.3
Q ss_pred ceeEEEeeeeeeeCCccCCCHH---HHHHHHHHCCCcEEEEe
Q 022757 10 RLSFLTVMVIIWKGDKLIDGVP---ETLDMLRSKGKRLVFVT 48 (292)
Q Consensus 10 k~i~fDiDGtL~~~~~~i~~a~---eal~~L~~~G~~~~~~T 48 (292)
..+++++||+-+.+...-.... +-...+...|..+.++.
T Consensus 38 ~~~~ie~kg~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 79 (80)
T cd01037 38 AKLVIELKGTFHDGLLRKLRTSEKQERIAFLEADGKKVLRFW 79 (80)
T ss_pred CCEEEEEECccccCchhhhhhcchHHHHHHHHHCCCEEEEEe
Confidence 4678899999887554322221 45666778888776654
No 440
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=26.44 E-value=1.3e+02 Score=25.60 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.5
Q ss_pred chhhHHHHHhcCCeEEEEecCCCC
Q 022757 238 LDTDILFGQNGGCKTLLVLSGVTS 261 (292)
Q Consensus 238 l~~Di~~a~~aG~~~i~V~~G~~~ 261 (292)
+..++..++++|++.+++.+|...
T Consensus 76 l~~~L~~~~~~Gi~niLal~GD~p 99 (281)
T TIGR00677 76 IDDALERAYSNGIQNILALRGDPP 99 (281)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCC
Confidence 566888999999999999999764
No 441
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=26.43 E-value=57 Score=26.29 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=34.1
Q ss_pred HHHHHcCCCC-CCCCceechHHHHHHHHHhcCCCCCCeEEEEcChhHHHHHHH
Q 022757 59 GKKFETLGLT-VTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELEL 110 (292)
Q Consensus 59 ~~~l~~lG~~-~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~ 110 (292)
++.|+.+|+| +++++++|.+.-. +++++++| +..|+.|...+-+.|++
T Consensus 93 AQIlE~l~vDYiDESEvlt~AD~~-hhI~KhnF---kvPFvCG~rdlGEALRR 141 (296)
T KOG1606|consen 93 AQILEALGVDYIDESEVLTPADWD-HHIEKHNF---KVPFVCGCRDLGEALRR 141 (296)
T ss_pred HHHHHHhccCccchhhhccccccc-chhhhhcC---cCceeeccccHHHHHHH
Confidence 5677889998 7888888877532 35555554 34678888888777764
No 442
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=26.23 E-value=2.4e+02 Score=24.19 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=30.4
Q ss_pred hceeEEEee-----e--eeeeCCccCCCHHHHHHHHHHCCCcEEEEeCC
Q 022757 9 LRLSFLTVM-----V--IIWKGDKLIDGVPETLDMLRSKGKRLVFVTNN 50 (292)
Q Consensus 9 ~k~i~fDiD-----G--tL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~ 50 (292)
+..+.+|+| + ...-.....|...+.++.|+++|+++++..+.
T Consensus 40 ~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P 88 (308)
T cd06593 40 CDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINP 88 (308)
T ss_pred eeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecC
Confidence 456777874 2 33223346789999999999999999887763
No 443
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=26.23 E-value=1.2e+02 Score=24.63 Aligned_cols=12 Identities=17% Similarity=-0.139 Sum_probs=9.1
Q ss_pred eeEEEeeeeeee
Q 022757 11 LSFLTVMVIIWK 22 (292)
Q Consensus 11 ~i~fDiDGtL~~ 22 (292)
.++-|+||+...
T Consensus 151 i~~tdVdGvy~~ 162 (229)
T cd04239 151 LKATNVDGVYDA 162 (229)
T ss_pred EEEECCCcccCC
Confidence 357899999853
No 444
>PRK00942 acetylglutamate kinase; Provisional
Probab=26.06 E-value=1.1e+02 Score=25.83 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=39.8
Q ss_pred ceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 10 RLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 10 k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+.++.=+.|+++.....+....+-+..|++.|.+++++++.. ....+.+..+|..
T Consensus 24 ~~iViK~GGs~l~~~~~~~~l~~~i~~l~~~g~~vVlVhGgg----~~~~~~~~~~g~~ 78 (283)
T PRK00942 24 KTIVIKYGGNAMTDEELKEAFARDIVLLKQVGINPVVVHGGG----PQIDELLKKLGIE 78 (283)
T ss_pred CeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCCEEEEeCCh----HHHHHHHHHCCCC
Confidence 567888999998666555555666778889999999999833 3455556667765
No 445
>PRK08116 hypothetical protein; Validated
Probab=26.02 E-value=1.1e+02 Score=25.84 Aligned_cols=51 Identities=18% Similarity=0.068 Sum_probs=29.1
Q ss_pred hhceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHH
Q 022757 8 LLRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKK 61 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~ 61 (292)
...++++|=-|+.-.++.......+.|......|.++++.|| .++.++...
T Consensus 178 ~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN---~~~~eL~~~ 228 (268)
T PRK08116 178 NADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTN---LSLEELKNQ 228 (268)
T ss_pred CCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC---CCHHHHHHH
Confidence 345666665565322211111122455555678899999999 777776554
No 446
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=25.82 E-value=29 Score=30.47 Aligned_cols=29 Identities=24% Similarity=0.106 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEecCCccc
Q 022757 152 NYYKVQYGTLCIRENPGCLFIATNRDAVT 180 (292)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~ 180 (292)
.++.+.+.+..+++.....+++||++..+
T Consensus 185 ~~pgl~elL~~Lr~~G~klfLvTNS~~~y 213 (343)
T TIGR02244 185 RDPKLPLFLSKLKEHGKKLFLLTNSDYDY 213 (343)
T ss_pred cchhHHHHHHHHHHCCCeEEEEeCCCHHH
Confidence 35667778888876434468999998754
No 447
>PRK08136 glycosyl transferase family protein; Provisional
Probab=25.76 E-value=2.7e+02 Score=24.25 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=44.6
Q ss_pred EEEeeeeeeeCCccCCCHH-HHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceechHHHHHHHHHhcCC
Q 022757 13 FLTVMVIIWKGDKLIDGVP-ETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDF 90 (292)
Q Consensus 13 ~fDiDGtL~~~~~~i~~a~-eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~ 90 (292)
.+|+-|| .|+..-.... -+-.-+...|++|...-|.+.-+.....+.|+.+|+++. .+...+.+.+++.++
T Consensus 82 ~iD~~gt--gGd~~t~nist~aA~vlA~~G~~V~kHGnr~vssk~gsadvleaLGi~~~-----~~~~~~~~~l~~~g~ 153 (317)
T PRK08136 82 PVVIPSY--NGARKQANLTPLLALLLAREGVPVLVHGVSEDPTRVTSAEIFEALGIPPT-----LHADQAQAKLAEGQP 153 (317)
T ss_pred eEEeCCC--CCCCCCcChHHHHHHHHHHCCCeEEEECCCCCCCcccHHHHHHHcCCCCC-----CCHHHHHHHHHhcCe
Confidence 4565555 4443333333 333346788999988888776665667889999999753 233455666766543
No 448
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=25.73 E-value=2.6e+02 Score=22.98 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=38.2
Q ss_pred ecCCcHHHHHHHHHHcCCC-CCcEEEECCCchhhHHHHHhcCCeEEEEe
Q 022757 209 VGKPSTFMMDYLANKFGIQ-KSQICMVGDRLDTDILFGQNGGCKTLLVL 256 (292)
Q Consensus 209 ~gKP~~~~~~~~~~~lgi~-~~~~~~iGD~l~~Di~~a~~aG~~~i~V~ 256 (292)
.++|+|...++..+ +..+ ..+++..|-+-..|+.-....|.+++.|-
T Consensus 25 ~~~pnp~L~~~~~~-l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvD 72 (226)
T PRK13256 25 QESPNEFLVKHFSK-LNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIE 72 (226)
T ss_pred cCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEe
Confidence 48899987777644 5543 46899999999999999999999999883
No 449
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=25.50 E-value=32 Score=22.40 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=25.9
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcC
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGG 249 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG 249 (292)
.-|-...++.+++.+.+++..+..|-++ ...|-..+.+|
T Consensus 25 ~apftaVlkfaAeeF~vp~~tsaiItnd-G~GInP~QTag 63 (76)
T PF03671_consen 25 EAPFTAVLKFAAEEFKVPPATSAIITND-GVGINPQQTAG 63 (76)
T ss_dssp TSBHHHHHHHHHHHTTS-SSSEEEEESS-S-EE-TTSBHH
T ss_pred CCchHHHHHHHHHHcCCCCceEEEEecC-Ccccccchhhh
Confidence 3455566777999999999999888766 45555555554
No 450
>PRK13938 phosphoheptose isomerase; Provisional
Probab=25.47 E-value=1.4e+02 Score=23.92 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHCCCcEEEEeCCCCC
Q 022757 28 DGVPETLDMLRSKGKRLVFVTNNSTK 53 (292)
Q Consensus 28 ~~a~eal~~L~~~G~~~~~~Tn~s~r 53 (292)
+...++++.++++|.+++.+|++..-
T Consensus 127 ~~vi~a~~~Ak~~G~~vI~iT~~~~s 152 (196)
T PRK13938 127 MSVLRAAKTARELGVTVVAMTGESGG 152 (196)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 34567888888888888888885543
No 451
>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04.
Probab=25.43 E-value=1.4e+02 Score=17.47 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=20.0
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHc
Q 022757 31 PETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFET 64 (292)
Q Consensus 31 ~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~ 64 (292)
.+..++|++.|.|+.+..- +..+-.++|+.
T Consensus 4 ~eV~~~LR~lgePi~lFGE----~~~~Rr~RL~~ 33 (44)
T smart00500 4 SEVIRRLRELGEPITLFGE----DDQERRQRLRQ 33 (44)
T ss_pred HHHHHHHHHcCCCeeecCC----ChHHHHHHHHH
Confidence 4678889999999877655 44444455543
No 452
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=25.22 E-value=57 Score=26.67 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=28.6
Q ss_pred ccCCCHHHHHHHHHHCCC-cEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 25 KLIDGVPETLDMLRSKGK-RLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 25 ~~i~~a~eal~~L~~~G~-~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
...||..++++.+++.|. .++|+|. ....-+...|+..|+.
T Consensus 84 P~~Pgmv~lik~~ak~g~~eliIVSD---aNsfFIe~~Lea~~~~ 125 (256)
T KOG3120|consen 84 PIVPGMVRLIKSAAKLGCFELIIVSD---ANSFFIEEILEAAGIH 125 (256)
T ss_pred CCCccHHHHHHHHHhCCCceEEEEec---CchhHHHHHHHHccHH
Confidence 345778888888888886 7778877 4445555666777764
No 453
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=24.92 E-value=1.4e+02 Score=24.97 Aligned_cols=42 Identities=17% Similarity=0.010 Sum_probs=31.3
Q ss_pred hceeEEEee-----eee--eeCCccCCCHHHHHHHHHHCCCcEEEEeCC
Q 022757 9 LRLSFLTVM-----VII--WKGDKLIDGVPETLDMLRSKGKRLVFVTNN 50 (292)
Q Consensus 9 ~k~i~fDiD-----GtL--~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~ 50 (292)
...+.+|++ |.. .-.....|...+.++.|+++|+++++.++.
T Consensus 40 ~d~~~lD~~~~~~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P 88 (265)
T cd06589 40 LDGFVLDDDYTDGYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDP 88 (265)
T ss_pred ccEEEECcccccCCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeCh
Confidence 457777776 344 112345788999999999999999998883
No 454
>PF13466 STAS_2: STAS domain
Probab=24.53 E-value=1.1e+02 Score=19.84 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=30.8
Q ss_pred ceeEEEeeeeee-eCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 10 RLSFLTVMVIIW-KGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 10 k~i~fDiDGtL~-~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+.+.+|+-++=. |+. -+.=-..+.+.+++.|.++.+ +| .++.+.+.++..|++
T Consensus 27 ~~v~lDls~v~~iDsa-gl~lL~~~~~~~~~~g~~~~l-~~----~~~~~~~ll~~~gld 80 (80)
T PF13466_consen 27 RPVVLDLSGVEFIDSA-GLQLLLAAARRARARGRQLRL-TG----PSPALRRLLELLGLD 80 (80)
T ss_pred CeEEEECCCCCeecHH-HHHHHHHHHHHHHHCCCeEEE-Ec----CCHHHHHHHHHhCcC
Confidence 567777777643 221 111112566677788887755 66 334466777777764
No 455
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=24.45 E-value=1.3e+02 Score=19.92 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=25.7
Q ss_pred ceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCC
Q 022757 10 RLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNS 51 (292)
Q Consensus 10 k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s 51 (292)
..-++|-||..+- +-...+|++..++.|..++.++.++
T Consensus 14 ~VrlI~~~g~~lG----v~~~~eAl~~A~~~~lDLV~v~~~~ 51 (76)
T PF05198_consen 14 EVRLIDEDGEQLG----VMSLREALRLAKEKGLDLVEVSPNA 51 (76)
T ss_dssp EEEEE-TTS-EEE----EEEHHHHHHHHHHTT-EEEEEETTS
T ss_pred EEEEECCCCcEec----eEEHHHHHHHHHHcCCcEEEEcCCC
Confidence 3456677877653 2227899999999999999888654
No 456
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=24.32 E-value=53 Score=29.29 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=22.7
Q ss_pred eeeeeCCccCCCHH----HHHHHHHHCCCcEEEEeCCC
Q 022757 18 VIIWKGDKLIDGVP----ETLDMLRSKGKRLVFVTNNS 51 (292)
Q Consensus 18 GtL~~~~~~i~~a~----eal~~L~~~G~~~~~~Tn~s 51 (292)
|=|+|+..+-+.|. +++++|++.|+|++.+.||=
T Consensus 48 GDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNH 85 (390)
T COG0420 48 GDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNH 85 (390)
T ss_pred cccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCC
Confidence 33445444444443 67777888889999999974
No 457
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=24.20 E-value=1.2e+02 Score=25.88 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=19.8
Q ss_pred cCCcH---HHHHHHHHHcCCCCCcEEEECCC
Q 022757 210 GKPST---FMMDYLANKFGIQKSQICMVGDR 237 (292)
Q Consensus 210 gKP~~---~~~~~~~~~lgi~~~~~~~iGD~ 237 (292)
|-|+. ..+..++..++++++++++++|-
T Consensus 12 GCg~~~il~al~~al~~l~~~~~~~ivvsdi 42 (279)
T PRK11866 12 GCGNYGILEALRKALAELGIPPENVVVVSGI 42 (279)
T ss_pred CCCChHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 55555 44555677778888888888874
No 458
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=24.11 E-value=1.8e+02 Score=20.24 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=21.1
Q ss_pred CCccCCCHHHHHHHHHHCCCcEEEEeCCC
Q 022757 23 GDKLIDGVPETLDMLRSKGKRLVFVTNNS 51 (292)
Q Consensus 23 ~~~~i~~a~eal~~L~~~G~~~~~~Tn~s 51 (292)
..+...|..+.++.+++....++|++++.
T Consensus 14 agkl~~G~~~v~kai~~gkaklViiA~D~ 42 (99)
T PRK01018 14 TGKVILGSKRTIKAIKLGKAKLVIVASNC 42 (99)
T ss_pred cCCEEEcHHHHHHHHHcCCceEEEEeCCC
Confidence 44566788889999987777766666654
No 459
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=23.82 E-value=77 Score=26.36 Aligned_cols=48 Identities=25% Similarity=0.220 Sum_probs=37.3
Q ss_pred eeecCCcHH----HHHHHHHHcCCCC--CcEEEECCCchhhHHHHHhcCCeEEE
Q 022757 207 LVVGKPSTF----MMDYLANKFGIQK--SQICMVGDRLDTDILFGQNGGCKTLL 254 (292)
Q Consensus 207 ~~~gKP~~~----~~~~~~~~lgi~~--~~~~~iGD~l~~Di~~a~~aG~~~i~ 254 (292)
.++-||+|. .|..-++.+|++| .++-+|.|+=++--.+|--.|+.+.+
T Consensus 77 QViiKPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEVWl 130 (279)
T cd00733 77 QVIIKPSPDNIQELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEVWL 130 (279)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEE
Confidence 455788775 4666688899987 47999999988999999888866553
No 460
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=23.79 E-value=1.9e+02 Score=24.57 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=31.6
Q ss_pred eeeeCCccC--CCHHHHHHHHHHCCC-cEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 19 IIWKGDKLI--DGVPETLDMLRSKGK-RLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 19 tL~~~~~~i--~~a~eal~~L~~~G~-~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
+.+.|..+. +...+.++.+++.|+ .+.+.||.+. ..+..+.+.+.|++
T Consensus 60 I~~tGGEPll~~~l~~iv~~l~~~g~~~v~i~TNG~l--l~~~~~~l~~~g~~ 110 (302)
T TIGR02668 60 VKITGGEPLLRKDLIEIIRRIKDYGIKDVSMTTNGIL--LEKLAKKLKEAGLD 110 (302)
T ss_pred EEEECcccccccCHHHHHHHHHhCCCceEEEEcCchH--HHHHHHHHHHCCCC
Confidence 334444432 556788888888888 7888888542 24556677777764
No 461
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=23.76 E-value=1.8e+02 Score=24.14 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=27.2
Q ss_pred eCCccCCCHH---HHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 22 KGDKLIDGVP---ETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 22 ~~~~~i~~a~---eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
|....+|+.. +|-+.|.+.|..|.-.++ ....++++|.+.|-.
T Consensus 101 D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~----~D~v~akrL~d~Gca 146 (247)
T PF05690_consen 101 DDKTLLPDPIETLKAAEILVKEGFVVLPYCT----DDPVLAKRLEDAGCA 146 (247)
T ss_dssp -TTT--B-HHHHHHHHHHHHHTT-EEEEEE-----S-HHHHHHHHHTT-S
T ss_pred CCCCcCCChhHHHHHHHHHHHCCCEEeecCC----CCHHHHHHHHHCCCC
Confidence 4555567744 677778899999988888 567788899998875
No 462
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=23.69 E-value=56 Score=31.08 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=26.9
Q ss_pred hhceeEEEeeeeeeeCC-ccCCCHHHHHHHHHHCCCcEEEEeC
Q 022757 8 LLRLSFLTVMVIIWKGD-KLIDGVPETLDMLRSKGKRLVFVTN 49 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~-~~i~~a~eal~~L~~~G~~~~~~Tn 49 (292)
++|+|++|+|+-= -+. .......++|+.+++.|+|++-...
T Consensus 93 ~IkgIvL~i~~~~-g~~~~~~~ei~~ai~~fk~sgKpVvA~~~ 134 (584)
T TIGR00705 93 RIEGLVFDLSNFS-GWDSPHLVEIGSALSEFKDSGKPVYAYGT 134 (584)
T ss_pred CceEEEEEccCCC-CCCHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 6899999998410 011 1123356889999999999765444
No 463
>PRK06835 DNA replication protein DnaC; Validated
Probab=23.64 E-value=1.2e+02 Score=26.54 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=32.4
Q ss_pred hhceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHH
Q 022757 8 LLRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKF 62 (292)
Q Consensus 8 ~~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l 62 (292)
...++++|=-|+............+.+.....++.++++.|| .++.++...+
T Consensus 246 ~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSN---l~~~el~~~~ 297 (329)
T PRK06835 246 NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTN---LSLEELLKTY 297 (329)
T ss_pred cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC---CCHHHHHHHH
Confidence 456677776677643222122223556666677899999999 7777765543
No 464
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=23.61 E-value=2.1e+02 Score=19.40 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=20.7
Q ss_pred HHHHHHHHHHCC--CcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 30 VPETLDMLRSKG--KRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 30 a~eal~~L~~~G--~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
..+.++.+++.+ .+++++|++. .........+.|++
T Consensus 58 ~~~~~~~i~~~~~~~~ii~~t~~~---~~~~~~~~~~~g~~ 95 (112)
T PF00072_consen 58 GLELLEQIRQINPSIPIIVVTDED---DSDEVQEALRAGAD 95 (112)
T ss_dssp HHHHHHHHHHHTTTSEEEEEESST---SHHHHHHHHHTTES
T ss_pred ccccccccccccccccEEEecCCC---CHHHHHHHHHCCCC
Confidence 557777777654 6788888633 23333333366653
No 465
>PRK03670 competence damage-inducible protein A; Provisional
Probab=23.29 E-value=1.8e+02 Score=24.37 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCCCCcEEEECCCchhhHHHHHh-c---CCeEEEEecCCCC
Q 022757 215 FMMDYLANKFGIQKSQICMVGDRLDTDILFGQN-G---GCKTLLVLSGVTS 261 (292)
Q Consensus 215 ~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~-a---G~~~i~V~~G~~~ 261 (292)
..+...+..+|++..++..|+|+ ..+|..+-+ + +.+-|.+..|.+.
T Consensus 23 ~~la~~L~~~G~~v~~~~iV~Dd-~~~I~~~l~~a~~~~~DlVIttGGlGp 72 (252)
T PRK03670 23 AFIAQKLTEKGYWVRRITTVGDD-VEEIKSVVLEILSRKPEVLVISGGLGP 72 (252)
T ss_pred HHHHHHHHHCCCEEEEEEEcCCC-HHHHHHHHHHHhhCCCCEEEECCCccC
Confidence 34555788899999999999999 588877732 2 3455555545443
No 466
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=23.29 E-value=1.9e+02 Score=21.25 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=27.5
Q ss_pred ceeEEEeeeeeeeCCccCCC------HHHHHHHHHHCCCcEEEEe
Q 022757 10 RLSFLTVMVIIWKGDKLIDG------VPETLDMLRSKGKRLVFVT 48 (292)
Q Consensus 10 k~i~fDiDGtL~~~~~~i~~------a~eal~~L~~~G~~~~~~T 48 (292)
.-|||=.|||+.-....-|. ..+.++.+.++|.++.++-
T Consensus 35 v~iFly~DgV~~~~~~~~Pa~dEf~l~~~~~~l~~~~gv~v~~C~ 79 (126)
T COG1553 35 VRLFLYQDGVHNGNKGQKPASDEFNLIQAWLELLTEQGVPVKLCV 79 (126)
T ss_pred EEEEEeeccccccccCCCCcccccchHHHHHHHHHHcCCcEeeeH
Confidence 35889999999865555554 3466777788888876554
No 467
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=23.24 E-value=3.9e+02 Score=21.28 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=45.9
Q ss_pred EeeeeeeeCCccCCCHHHHHHHHHH------CCCcEEEEeCCCCCCHHHHHHHHHcCCCCCCCC-ceechHHHHHHHHHh
Q 022757 15 TVMVIIWKGDKLIDGVPETLDMLRS------KGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEE-EIFASSFAAAAYLKS 87 (292)
Q Consensus 15 DiDGtL~~~~~~i~~a~eal~~L~~------~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~-~i~~~~~~~~~~l~~ 87 (292)
+.|++++.+...+. .+.+.+.+ .+.+ +++-| +..++.+++.|+..... .-. +...+.+++..
T Consensus 49 ~~~~iiftS~~av~---~~~~~~~~~~~~~~~~~~-~~avG------~~Ta~~l~~~g~~~~~~~~~~-~~~~L~~~i~~ 117 (239)
T cd06578 49 EYDWLIFTSPNAVE---AFFEALEELGLRALAGLK-IAAVG------PKTAEALREAGLTADFVPEEG-DSEGLLELLEL 117 (239)
T ss_pred CCCEEEEECHHHHH---HHHHHHHhhCCccccCCE-EEEEC------HHHHHHHHHcCCCceeCCCcc-CHHHHHHHHHh
Confidence 67777777654322 23333332 2333 34444 33456677888864221 111 23445566655
Q ss_pred cCCCCCCeEEEEcC----hhHHHHHHHcCCeec
Q 022757 88 IDFPKDKKVYVVGE----DGILKELELAGFQYL 116 (292)
Q Consensus 88 ~~~~~~~~~~~~g~----~~~~~~l~~~g~~~~ 116 (292)
... .++++++... ..+.+.|.+.|..+.
T Consensus 118 ~~~-~~~~il~~~g~~~~~~l~~~L~~~g~~v~ 149 (239)
T cd06578 118 QDG-KGKRILRPRGGRAREDLAEALRERGAEVD 149 (239)
T ss_pred cCC-CCCEEEEEcCcchhHHHHHHHHHCCCEEE
Confidence 422 3455655433 356667777777653
No 468
>PRK14556 pyrH uridylate kinase; Provisional
Probab=23.16 E-value=1.6e+02 Score=24.63 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=17.9
Q ss_pred HHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHH
Q 022757 32 ETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFE 63 (292)
Q Consensus 32 eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~ 63 (292)
.+++.+++.|+++++..+ +.+..+.+.+.
T Consensus 210 ~A~~~a~~~gIpi~I~ng---~~~~~L~~~l~ 238 (249)
T PRK14556 210 GAFTQCRDFGIPIYVFDL---TQPNALVDAVL 238 (249)
T ss_pred HHHHHHHHCCCcEEEECC---CCchHHHHHHc
Confidence 456666777777777766 44555555543
No 469
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=23.15 E-value=1.7e+02 Score=26.10 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=27.4
Q ss_pred EEeeeeeeeCCc---cCCC-HHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHH
Q 022757 14 LTVMVIIWKGDK---LIDG-VPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKF 62 (292)
Q Consensus 14 fDiDGtL~~~~~---~i~~-a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l 62 (292)
+.+|||++...+ +... ....-+.+++.|+|+..+-..-+-+..++.-++
T Consensus 312 ~~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D~~~~~gQi~TRl 364 (377)
T TIGR03190 312 YNVQGAIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFDITNPIGPFRIRI 364 (377)
T ss_pred hCCCEEEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecCCCCchHHHHHHH
Confidence 568999875543 2222 223345677889997766433333455544444
No 470
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=23.12 E-value=1.8e+02 Score=24.36 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=38.2
Q ss_pred EEeeeeeeeCCcc-CC-CHHHHHHHHHHCCCcEEEEeCCCCCC-----------HHHHHHHHHcCCCCCCCC
Q 022757 14 LTVMVIIWKGDKL-ID-GVPETLDMLRSKGKRLVFVTNNSTKS-----------RKQYGKKFETLGLTVTEE 72 (292)
Q Consensus 14 fDiDGtL~~~~~~-i~-~a~eal~~L~~~G~~~~~~Tn~s~r~-----------~~~~~~~l~~lG~~~~~~ 72 (292)
=|+|..++-+... +. ...++|++.-.+|-++.++.+..... ...+...|...|+.+..+
T Consensus 196 ~~~d~Lvi~~P~~~ls~~e~~~l~~yl~~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~~Gi~~~~~ 267 (271)
T PF09822_consen 196 DDADVLVIAGPKTDLSEEELYALDQYLMNGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEEYGIRINPG 267 (271)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHcCCeEEEEECCcccccccccccccccccCHHHHHHHcCCEeCCC
Confidence 3555666655443 54 35688999999999998888855333 235566677777765443
No 471
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=22.90 E-value=2.1e+02 Score=24.05 Aligned_cols=48 Identities=15% Similarity=0.258 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhc---CCeEEEEecCCCChh
Q 022757 215 FMMDYLANKFGIQKSQICMVGDRLDTDILFGQNG---GCKTLLVLSGVTSLS 263 (292)
Q Consensus 215 ~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~a---G~~~i~V~~G~~~~~ 263 (292)
..+..-+..+|++..+...|||+ ..+|.-+-+. -.+.+.+..|.+...
T Consensus 24 ~~la~~L~~~G~~v~~~~~VgD~-~~~I~~~l~~a~~r~D~vI~tGGLGPT~ 74 (255)
T COG1058 24 AFLADELTELGVDLARITTVGDN-PDRIVEALREASERADVVITTGGLGPTH 74 (255)
T ss_pred HHHHHHHHhcCceEEEEEecCCC-HHHHHHHHHHHHhCCCEEEECCCcCCCc
Confidence 44445677889999999999999 5888655322 156666666766543
No 472
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=22.79 E-value=3.6e+02 Score=22.03 Aligned_cols=51 Identities=27% Similarity=0.379 Sum_probs=36.3
Q ss_pred CCC-HHHHHHHHHHCCCcEEEEeCCCCC--CHHHHHHHHHcCCCCCCCCceech
Q 022757 27 IDG-VPETLDMLRSKGKRLVFVTNNSTK--SRKQYGKKFETLGLTVTEEEIFAS 77 (292)
Q Consensus 27 i~~-a~eal~~L~~~G~~~~~~Tn~s~r--~~~~~~~~l~~lG~~~~~~~i~~~ 77 (292)
.|. ..+..+.+++.|.+.+++..-+++ .+.++.+.++++|+++..-..+.+
T Consensus 61 HPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~Cs 114 (217)
T PF02593_consen 61 HPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCS 114 (217)
T ss_pred CchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccc
Confidence 455 457788888899998888875555 445888999999987544344443
No 473
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=22.75 E-value=1.7e+02 Score=25.32 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=29.6
Q ss_pred eeCCccC--CCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCC
Q 022757 21 WKGDKLI--DGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLG 66 (292)
Q Consensus 21 ~~~~~~i--~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG 66 (292)
+.|..+. |...+.++.++++|+.+.+.||.+-. .+. ...+...|
T Consensus 78 i~GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll-~~~-~~~l~~~~ 123 (318)
T TIGR03470 78 IPGGEPLLHPEIDEIVRGLVARKKFVYLCTNALLL-EKK-LDKFEPSP 123 (318)
T ss_pred EeCccccccccHHHHHHHHHHcCCeEEEecCceeh-HHH-HHHHHhCC
Confidence 3444443 67789999999999999999996643 333 34454444
No 474
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.74 E-value=1.5e+02 Score=19.27 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=9.4
Q ss_pred HHHHHHHHHHCCCcEEEEe
Q 022757 30 VPETLDMLRSKGKRLVFVT 48 (292)
Q Consensus 30 a~eal~~L~~~G~~~~~~T 48 (292)
..++++.++++|.+++.+|
T Consensus 63 ~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 63 LLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 3344555555555554444
No 475
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=22.52 E-value=4.3e+02 Score=21.52 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=35.1
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHcCCCCCCCCceech-----HHHHHHHHHhcCCCCCCeEEEEcChhHHHHHHHcC
Q 022757 42 KRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFAS-----SFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAG 112 (292)
Q Consensus 42 ~~~~~~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~-----~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~g 112 (292)
.+++++|.+. .+..+.+++.|..+ |..+ -..+.+.|.+.++ ..+++-|...+...+-+.|
T Consensus 98 ~p~~v~~~~~----~~~~~~~~~~g~~~----i~~~~~~vdl~~~l~~L~~~~i---~~vlvEGG~~L~~s~l~~g 162 (218)
T COG1985 98 APTIVVTTEP----EEKLRELKEAGVEV----ILLPDGRVDLAALLEELAERGI---NSVLVEGGATLNGSFLEAG 162 (218)
T ss_pred CcEEEEecCc----hhhhhHHHhCCCEE----EEcCCCccCHHHHHHHHHhCCC---cEEEEccCHHHHHHHHHcC
Confidence 4777777733 55556667777642 1111 1334556665544 4678878777776666554
No 476
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=22.47 E-value=2.5e+02 Score=23.39 Aligned_cols=21 Identities=5% Similarity=-0.067 Sum_probs=15.6
Q ss_pred eeEEEeeeeeeeCCccCCCHH
Q 022757 11 LSFLTVMVIIWKGDKLIDGVP 31 (292)
Q Consensus 11 ~i~fDiDGtL~~~~~~i~~a~ 31 (292)
++.-|+||++-+....+|++.
T Consensus 166 ~f~tdVdGVy~~~p~~~p~~~ 186 (252)
T COG1608 166 IFLTDVDGVYDRDPGKVPDAR 186 (252)
T ss_pred EEEecCCceecCCCCcCcccc
Confidence 567799999987766666643
No 477
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=22.46 E-value=84 Score=26.19 Aligned_cols=48 Identities=25% Similarity=0.200 Sum_probs=37.2
Q ss_pred eeecCCcHH----HHHHHHHHcCCCCC--cEEEECCCchhhHHHHHhcCCeEEE
Q 022757 207 LVVGKPSTF----MMDYLANKFGIQKS--QICMVGDRLDTDILFGQNGGCKTLL 254 (292)
Q Consensus 207 ~~~gKP~~~----~~~~~~~~lgi~~~--~~~~iGD~l~~Di~~a~~aG~~~i~ 254 (292)
.++-||+|. .|..-++.+|++|. ++-+|.|+=++--.+|--.|+.+.+
T Consensus 81 QVilKPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWl 134 (283)
T PRK09348 81 QVILKPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEVWL 134 (283)
T ss_pred EEEEcCCCccHHHHHHHHHHHhCCCccccceeEeecCCCCCcccccccceEEEE
Confidence 445688775 46666888999874 7999999988889999888866543
No 478
>PF01888 CbiD: CbiD; InterPro: IPR002748 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiD, an essential protein for cobalamin biosynthesis in both Salmonella typhimurium and Bacillus megaterium. A deletion mutant of CbiD suggests that this enzyme is involved in C-1 methylation and deacylation reactions required during the ring contraction process in the anaerobic pathway to cobalamin (similar role as CobF) []. The CbiD protein has a putative S-AdoMet binding site []. CbiD has no counterpart in the aerobic pathway.; GO: 0016740 transferase activity, 0009236 cobalamin biosynthetic process; PDB: 1SR8_A.
Probab=22.45 E-value=1.3e+02 Score=25.34 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=29.2
Q ss_pred eecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEe
Q 022757 208 VVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVL 256 (292)
Q Consensus 208 ~~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~ 256 (292)
.+--|-....+.+.+.++++.+.++.+||=+..=++.|.+.|++.+++.
T Consensus 201 vvl~~G~~ge~~a~~~~~l~~~~~v~~gnfiG~~L~~a~~~g~~~vll~ 249 (261)
T PF01888_consen 201 VVLVPGNYGEKFARRLLGLPEEAIVQMGNFIGFALEEAAEKGFKKVLLV 249 (261)
T ss_dssp EEEESSHHHHHHHHHH-TS--EEEE------TT-HHHHTT-SSEEE-EE
T ss_pred EEEccChHHHHHHHHhhccchhcEEEecchhHHHHHHHHHcCCCEEEEe
Confidence 3345666777778888899999999777777666899999999998775
No 479
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=22.22 E-value=4.3e+02 Score=21.47 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=30.1
Q ss_pred HHHHHHHcCCCC-CCCCceechHHHHHHHHHhcCCCCCCeEEEEcC----hhHHHHHHHcCCee
Q 022757 57 QYGKKFETLGLT-VTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGE----DGILKELELAGFQY 115 (292)
Q Consensus 57 ~~~~~l~~lG~~-~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~g~----~~~~~~l~~~g~~~ 115 (292)
..++.+++.|+. +-+. -. ++..+.+++... ...+++++++.. +.+.+.|++.|+.+
T Consensus 84 ~Ta~~l~~~G~~~~~~~-~~-~~e~L~~~~~~~-~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v 144 (240)
T PRK09189 84 ATAEAARELGFRHVIEG-GG-DGVRLAETVAAA-LAPTARLLYLAGRPRAPVFEDRLAAAGIPF 144 (240)
T ss_pred HHHHHHHHcCCCCCcCC-CC-CHHHHHHHHHHh-cCCCCcEEEeccCcccchhHHHHHhCCCee
Confidence 345567788885 2111 12 234455555432 223456665533 45677788888776
No 480
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=22.11 E-value=2e+02 Score=21.69 Aligned_cols=31 Identities=16% Similarity=0.045 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCCCCcEEEECCCchhhHHHH
Q 022757 214 TFMMDYLANKFGIQKSQICMVGDRLDTDILFG 245 (292)
Q Consensus 214 ~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a 245 (292)
..++...++++|.+..+.-.+.|+ ..+|.-+
T Consensus 22 ~~~l~~~l~~~G~~v~~~~~v~Dd-~~~i~~~ 52 (152)
T cd00886 22 GPALVELLEEAGHEVVAYEIVPDD-KDEIREA 52 (152)
T ss_pred HHHHHHHHHHcCCeeeeEEEcCCC-HHHHHHH
Confidence 344566789999998999999999 5777664
No 481
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=22.04 E-value=80 Score=18.43 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=9.5
Q ss_pred HHHHHHHHCCCcEEEEeC
Q 022757 32 ETLDMLRSKGKRLVFVTN 49 (292)
Q Consensus 32 eal~~L~~~G~~~~~~Tn 49 (292)
|..+.|++.|.+..-+|.
T Consensus 10 eL~~~L~~~G~~~gPIt~ 27 (44)
T smart00540 10 ELRAELKQYGLPPGPITD 27 (44)
T ss_pred HHHHHHHHcCCCCCCcCc
Confidence 344455555555555554
No 482
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=21.95 E-value=1.4e+02 Score=26.73 Aligned_cols=44 Identities=11% Similarity=0.007 Sum_probs=34.6
Q ss_pred hhhhceeEEEeeeeeeeCCccCCCHHHHHHHHHHCCCcEEEEeC
Q 022757 6 LTLLRLSFLTVMVIIWKGDKLIDGVPETLDMLRSKGKRLVFVTN 49 (292)
Q Consensus 6 ~~~~k~i~fDiDGtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn 49 (292)
|.-++--.+|-+|-...|.-.-.+..++.++|+++|..+.=+..
T Consensus 4 ~~~~~y~a~~~~G~~~~g~~~A~~~~~a~~~L~~~g~~~~~i~~ 47 (399)
T PRK10573 4 KQLWRWQAINGKGELQDGMLWATSRLLLYQALQQQGLQPLSLKR 47 (399)
T ss_pred CCeEEEEEECCCCCEEEEEEEeCCHHHHHHHHHHCCCeeEEEee
Confidence 44477778899999988776667788999999999987654443
No 483
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=21.90 E-value=1.9e+02 Score=25.33 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=36.8
Q ss_pred hceeEEEee-----eeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCH--HHHHHHHHcCCC
Q 022757 9 LRLSFLTVM-----VIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSR--KQYGKKFETLGL 67 (292)
Q Consensus 9 ~k~i~fDiD-----GtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~--~~~~~~l~~lG~ 67 (292)
+..|.+|+| +...-.....|...+.++.|+++|+++++..+...... ....+...+.|+
T Consensus 40 ~d~i~lD~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~ 105 (339)
T cd06603 40 YDVIWLDIEHTDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGY 105 (339)
T ss_pred ceEEEEChHHhCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCe
Confidence 457888876 22211234578899999999999999887776332211 123334555554
No 484
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=21.72 E-value=2e+02 Score=25.56 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=40.2
Q ss_pred ecCCcHHHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEec
Q 022757 209 VGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLS 257 (292)
Q Consensus 209 ~gKP~~~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~ 257 (292)
+--|-....+++.+.++++.+.++.+||=+..=++.|.+.|++.+++..
T Consensus 205 vl~~G~~ge~~a~~~~~l~~~~~V~~gnfiG~~L~~A~~~g~~~i~l~G 253 (361)
T PRK00075 205 VLVTGNNGEDYARKLLGLPEDAIIKMGNFVGPMLKAAARLGVKKVLLVG 253 (361)
T ss_pred EEccChHHHHHHHHhcCCChhhEEEeehhHHHHHHHHHHcCCCEEEEEe
Confidence 3455566677777778999999999999988889999999999988853
No 485
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.55 E-value=2.2e+02 Score=17.73 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=18.2
Q ss_pred HHHHHHHHHHCCCcEEEEeCCC
Q 022757 30 VPETLDMLRSKGKRLVFVTNNS 51 (292)
Q Consensus 30 a~eal~~L~~~G~~~~~~Tn~s 51 (292)
..+.+++++++|+..+.+|.-.
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCC
Confidence 5678899999999998888843
No 486
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.45 E-value=1.9e+02 Score=24.07 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=24.8
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCC
Q 022757 31 PETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 68 (292)
Q Consensus 31 ~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~ 68 (292)
.+.++.++++|+.+.+-|.++.....+..+++.++|++
T Consensus 213 ~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l~~~Gvd 250 (265)
T cd08564 213 EEFVKKAHENGLKVMTYFDEPVNDNEEDYKVYLELGVD 250 (265)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCCHHHHHHHHHcCCC
Confidence 46788888889888888832212334445566677875
No 487
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=21.38 E-value=1.9e+02 Score=24.54 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=32.0
Q ss_pred eeeeeeCCccC--CCH-HHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHH
Q 022757 17 MVIIWKGDKLI--DGV-PETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFE 63 (292)
Q Consensus 17 DGtL~~~~~~i--~~a-~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~ 63 (292)
.|+.+.|+.+. +.. .+.++.+++.|+.+.+.||... ..+.+.+.+.
T Consensus 127 ~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~-~~~~~~~ll~ 175 (295)
T TIGR02494 127 GGVTLSGGEPLLQPEFALALLQACHERGIHTAVETSGFT-PWETIEKVLP 175 (295)
T ss_pred CcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCC-CHHHHHHHHh
Confidence 57777776664 443 4889999999999999999763 3344444443
No 488
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=21.37 E-value=2e+02 Score=22.14 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCCCcEEEECCCchhhHHHHH-h----cCCeEEEEecC
Q 022757 215 FMMDYLANKFGIQKSQICMVGDRLDTDILFGQ-N----GGCKTLLVLSG 258 (292)
Q Consensus 215 ~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~-~----aG~~~i~V~~G 258 (292)
.++...++.+|.+....-.|.|+ ..+|..+- + .+.+-+....|
T Consensus 25 ~~l~~~L~~~G~~v~~~~iv~Dd-~~~i~~~l~~~~~~~~~DlVIttGG 72 (163)
T TIGR02667 25 QYLVERLTEAGHRLADRAIVKDD-IYQIRAQVSAWIADPDVQVILITGG 72 (163)
T ss_pred HHHHHHHHHCCCeEEEEEEcCCC-HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 45556788999999999999999 58777662 2 25665555434
No 489
>PLN02735 carbamoyl-phosphate synthase
Probab=21.36 E-value=9.6e+02 Score=25.14 Aligned_cols=66 Identities=8% Similarity=0.017 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCCCcEEEECCCchhhHHHHHhcCCeEEEEecCCCChhhccCCCCCCCCcEEeCCHhhHHHhHHhh
Q 022757 215 FMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAAA 291 (292)
Q Consensus 215 ~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~aG~~~i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~~l~~~~~~~ 291 (292)
..+..+++.+|++--....+.+. ..-...++..|+..+ |..-.+. ..+--.++.+-+||.+.+..+
T Consensus 704 ~~~k~~l~~~GIp~p~~~~v~s~-eea~~~a~~iGyPvv-VKP~~g~---------gG~G~~iV~~~eeL~~al~~a 769 (1102)
T PLN02735 704 ERFNAILNELKIEQPKGGIARSE-ADALAIAKRIGYPVV-VRPSYVL---------GGRAMEIVYSDDKLKTYLETA 769 (1102)
T ss_pred HHHHHHHHHcCCCCCCeeEeCCH-HHHHHHHHhcCCCeE-EEeCCCC---------CCCcEEEECCHHHHHHHHHHH
Confidence 45666888999876666666543 333456777887644 4322111 013456788888887766654
No 490
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=21.16 E-value=1.4e+02 Score=27.20 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=37.8
Q ss_pred eeEEEeeeeeeeCCc-cCCCH-HHHHHHHHHCCCcEEEEeCCCCCCHHH---HHHHHH-cCCCC
Q 022757 11 LSFLTVMVIIWKGDK-LIDGV-PETLDMLRSKGKRLVFVTNNSTKSRKQ---YGKKFE-TLGLT 68 (292)
Q Consensus 11 ~i~fDiDGtL~~~~~-~i~~a-~eal~~L~~~G~~~~~~Tn~s~r~~~~---~~~~l~-~lG~~ 68 (292)
+++.--||++.+-.+ -+..| ...++.|++.|+|++++=|++.....+ +++.|. +.+.+
T Consensus 148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vp 211 (492)
T PF09547_consen 148 GIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVP 211 (492)
T ss_pred eEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 566777888776332 23334 368999999999999999965443333 444453 45665
No 491
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=21.11 E-value=5.2e+02 Score=22.00 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEc
Q 022757 78 SFAAAAYLKSIDFPKDKKVYVVG 100 (292)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~g 100 (292)
+..+.++|.+.++ +++.+++
T Consensus 170 ~~~a~~~L~~~G~---~~I~~i~ 189 (342)
T PRK10014 170 AQLLTEHLIRNGH---QRIAWLG 189 (342)
T ss_pred HHHHHHHHHHCCC---CEEEEEc
Confidence 3445567766653 4565553
No 492
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=21.09 E-value=96 Score=28.18 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=19.3
Q ss_pred HHHHHHcCCCCCCCCceechHHHHHHHHHhcCC
Q 022757 58 YGKKFETLGLTVTEEEIFASSFAAAAYLKSIDF 90 (292)
Q Consensus 58 ~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~ 90 (292)
..+.|++.|++......+++...+..++++.++
T Consensus 112 ~K~~l~~~gIpt~~~~~~~~~~ea~~~~~~~~~ 144 (426)
T PRK13789 112 AKSLMKEAKIPTASYKTFTEYSSSLSYLESEML 144 (426)
T ss_pred HHHHHHHcCCCCCCeEeeCCHHHHHHHHHhcCC
Confidence 344556677776555566665555566665544
No 493
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=21.07 E-value=4.1e+02 Score=20.74 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCCcEEEEeCC---CCCCHHHHHHHHHcCCCC
Q 022757 30 VPETLDMLRSKGKRLVFVTNN---STKSRKQYGKKFETLGLT 68 (292)
Q Consensus 30 a~eal~~L~~~G~~~~~~Tn~---s~r~~~~~~~~l~~lG~~ 68 (292)
..++.++-++.|++++++++. ++.+++..+..+..+|+.
T Consensus 84 i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~ 125 (171)
T cd01580 84 IYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVK 125 (171)
T ss_pred HHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCC
Confidence 568899999999999888873 334666667777888884
No 494
>PRK10658 putative alpha-glucosidase; Provisional
Probab=21.01 E-value=2.4e+02 Score=27.38 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=37.0
Q ss_pred hceeEEEee-------eeeeeCCccCCCHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCC
Q 022757 9 LRLSFLTVM-------VIIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 67 (292)
Q Consensus 9 ~k~i~fDiD-------GtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~ 67 (292)
..+|.+|++ +...-.....|...+.++.|+++|+++++..+..-.......+...+.|.
T Consensus 299 ~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy 364 (665)
T PRK10658 299 LHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGY 364 (665)
T ss_pred ceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCe
Confidence 457888875 22211234578889999999999999988887432222223333444454
No 495
>smart00455 RBD Raf-like Ras-binding domain.
Probab=20.91 E-value=1e+02 Score=19.97 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=22.1
Q ss_pred cCCcHHHHHHHHHHcCCCCCcEEEE
Q 022757 210 GKPSTFMMDYLANKFGIQKSQICMV 234 (292)
Q Consensus 210 gKP~~~~~~~~~~~lgi~~~~~~~i 234 (292)
|++=.+++..++++.|+.++++..+
T Consensus 19 g~tl~e~L~~~~~kr~l~~~~~~v~ 43 (70)
T smart00455 19 GKTVRDALAKALKKRGLNPECCVVR 43 (70)
T ss_pred CCCHHHHHHHHHHHcCCCHHHEEEE
Confidence 7777888999999999999988777
No 496
>PHA02114 hypothetical protein
Probab=20.86 E-value=65 Score=22.43 Aligned_cols=10 Identities=10% Similarity=-0.134 Sum_probs=6.5
Q ss_pred eEEEeeeeee
Q 022757 12 SFLTVMVIIW 21 (292)
Q Consensus 12 i~fDiDGtL~ 21 (292)
=.||..||++
T Consensus 77 ~~fd~~gtiv 86 (127)
T PHA02114 77 GAFDQYGTIV 86 (127)
T ss_pred hhHhhcCeEE
Confidence 3577777764
No 497
>PLN02235 ATP citrate (pro-S)-lyase
Probab=20.71 E-value=2.5e+02 Score=25.56 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=41.4
Q ss_pred hhhhhhhceeEEEeeeeeeeCCccC---CCHHHHHHHHHH----CCCcEEEEeCCCCCCHHHHHHHHH----cCCCCC
Q 022757 3 MSLLTLLRLSFLTVMVIIWKGDKLI---DGVPETLDMLRS----KGKRLVFVTNNSTKSRKQYGKKFE----TLGLTV 69 (292)
Q Consensus 3 m~~~~~~k~i~fDiDGtL~~~~~~i---~~a~eal~~L~~----~G~~~~~~Tn~s~r~~~~~~~~l~----~lG~~~ 69 (292)
|+--++.|++++-|.|=+.+-+..- .|..+|++.+.. ..+|+++ --.+-..++=.+.|+ +.|+++
T Consensus 324 ~~~~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivV--Rl~GtN~eeG~~il~e~~~~~gl~i 399 (423)
T PLN02235 324 ATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFV--RRGGPNYQKGLAKMRALGEEIGVPI 399 (423)
T ss_pred hhcCCCCcEEEEEEecccccchhhhhhhhHHHHHHHHhhhccccCCccEEE--ECCCCCHHHHHHHHHHhHHhcCCcE
Confidence 4333468999999999998877655 677788877753 3455533 223344555555565 677653
No 498
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=20.71 E-value=1.5e+02 Score=25.02 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=27.4
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHHcCCCCC
Q 022757 30 VPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV 69 (292)
Q Consensus 30 a~eal~~L~~~G~~~~~~Tn~s~r~~~~~~~~l~~lG~~~ 69 (292)
+....+.|+++|..+.|+++ .......+.++..|+++
T Consensus 20 cl~LA~~l~~~g~~v~f~~~---~~~~~~~~~i~~~g~~v 56 (279)
T TIGR03590 20 CLTLARALHAQGAEVAFACK---PLPGDLIDLLLSAGFPV 56 (279)
T ss_pred HHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHcCCeE
Confidence 34455667789999999999 44555567888889874
No 499
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=20.61 E-value=2.7e+02 Score=21.61 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCCCcEEEECCCchhhHHHHHh---cCCeEEEEecCCC
Q 022757 215 FMMDYLANKFGIQKSQICMVGDRLDTDILFGQN---GGCKTLLVLSGVT 260 (292)
Q Consensus 215 ~~~~~~~~~lgi~~~~~~~iGD~l~~Di~~a~~---aG~~~i~V~~G~~ 260 (292)
..+...++.+|++...+..++|+ ..+|.-+-+ ...+-|.+..|.+
T Consensus 22 ~~l~~~L~~~G~~v~~~~~v~Dd-~~~I~~~l~~~~~~~dlVIttGG~G 69 (170)
T cd00885 22 AFLAKELAELGIEVYRVTVVGDD-EDRIAEALRRASERADLVITTGGLG 69 (170)
T ss_pred HHHHHHHHHCCCEEEEEEEeCCC-HHHHHHHHHHHHhCCCEEEECCCCC
Confidence 44555788899999999999999 577765532 2445555544443
No 500
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=20.52 E-value=2.1e+02 Score=25.02 Aligned_cols=41 Identities=17% Similarity=0.035 Sum_probs=31.4
Q ss_pred hceeEEEee-----eeeeeCCccCCCHHHHHHHHHHCCCcEEEEeC
Q 022757 9 LRLSFLTVM-----VIIWKGDKLIDGVPETLDMLRSKGKRLVFVTN 49 (292)
Q Consensus 9 ~k~i~fDiD-----GtL~~~~~~i~~a~eal~~L~~~G~~~~~~Tn 49 (292)
+..|.+|+| +...-.....|...+.++.|.++|+++++...
T Consensus 40 ~D~i~lDidy~~~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~ 85 (332)
T cd06601 40 LDGLHVDVDFQDNYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNIT 85 (332)
T ss_pred CceEEEcCchhcCCCceeecCCCCCCHHHHHHHHHHCCCeEEEEec
Confidence 567888887 44332234578889999999999999888777
Done!