BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022758
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GZE|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
Length = 211
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 171 SYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKKDTLKARAQS-AKTAT 225
SY +A+ + +L Q K V+N NL+ LL+ + ++ ++ + R A T
Sbjct: 38 SYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGT 97
Query: 226 KVSEMLGNVNTSSALSAFEKMEEKVL 251
+ L N N + +AFEK + K L
Sbjct: 98 EFQNTLLNSNGTINKTAFEKAKAKFL 123
>pdb|2BOV|B Chain B, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 251
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 171 SYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKKDTLKARAQS-AKTAT 225
SY +A+ + +L Q K V+N NL+ LL+ + ++ ++ + R A T
Sbjct: 78 SYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGT 137
Query: 226 KVSEMLGNVNTSSALSAFEKMEEKVL 251
+ L N N + +AFEK + K L
Sbjct: 138 EFQNTLLNSNGTINKTAFEKAKAKFL 163
>pdb|2A78|B Chain B, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|B Chain B, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 223
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 171 SYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKKDTLKARAQS-AKTAT 225
SY +A+ + +L Q K V+N NL+ LL+ + ++ ++ + R A T
Sbjct: 50 SYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGT 109
Query: 226 KVSEMLGNVNTSSALSAFEKMEEKVL 251
+ L N N + +AFEK + K L
Sbjct: 110 EFQNTLLNSNGTINKTAFEKAKAKFL 135
>pdb|1G24|A Chain A, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|B Chain B, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|C Chain C, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|D Chain D, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1GZF|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1GZF|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1GZF|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1GZF|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1UZI|A Chain A, C3 Exoenzyme From Clostridium Botulinum, Tetragonal Form
pdb|1UZI|B Chain B, C3 Exoenzyme From Clostridium Botulinum, Tetragonal Form
pdb|2C89|A Chain A, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C89|B Chain B, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C89|C Chain C, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C89|D Chain D, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C8A|A Chain A, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
pdb|2C8A|B Chain B, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
pdb|2C8A|C Chain C, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
pdb|2C8A|D Chain D, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
Length = 211
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 171 SYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKKDTLKARAQS-AKTAT 225
SY +A+ + +L Q K V+N NL+ LL+ + ++ ++ + R A T
Sbjct: 38 SYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGT 97
Query: 226 KVSEMLGNVNTSSALSAFEKMEEKVL 251
+ L N N + +AFEK + K L
Sbjct: 98 EFQNTLLNSNGTINKTAFEKAKAKFL 123
>pdb|2C8B|X Chain X, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
( Free State, Crystal Form Ii)
pdb|2C8C|A Chain A, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8C|B Chain B, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8C|C Chain C, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8C|D Chain D, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8D|A Chain A, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8D|B Chain B, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8D|C Chain C, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8D|D Chain D, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
Length = 211
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 171 SYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKKDTLKARAQS-AKTAT 225
SY +A+ + +L Q K V+N NL+ LL+ + ++ ++ + R A T
Sbjct: 38 SYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGT 97
Query: 226 KVSEMLGNVNTSSALSAFEKMEEKVL 251
+ L N N + +AFEK + K L
Sbjct: 98 EFQNTLLNSNGTINKTAFEKAKAKFL 123
>pdb|2C8G|A Chain A, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8G|B Chain B, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8G|C Chain C, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8G|D Chain D, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8H|A Chain A, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
pdb|2C8H|B Chain B, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
pdb|2C8H|C Chain C, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
pdb|2C8H|D Chain D, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
Length = 211
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 171 SYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKKDTLKARAQS-AKTAT 225
SY +A+ + +L Q K V+N NL+ LL+ + ++ ++ + R A T
Sbjct: 38 SYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGT 97
Query: 226 KVSEMLGNVNTSSALSAFEKMEEKVL 251
+ L N N + +AFEK + K L
Sbjct: 98 EFQNTLLNSNGTINKTAFEKAKAKFL 123
>pdb|2C8E|E Chain E, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Free State, Crystal Form Iii)
pdb|2C8E|F Chain F, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Free State, Crystal Form Iii)
pdb|2C8E|G Chain G, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Free State, Crystal Form Iii)
pdb|2C8F|E Chain E, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form Iii)
pdb|2C8F|F Chain F, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form Iii)
pdb|2C8F|G Chain G, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form Iii)
Length = 211
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 171 SYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKKDTLKARAQS-AKTAT 225
SY +A+ + +L Q K V+N NL+ LL+ + ++ ++ + R A T
Sbjct: 38 SYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGT 97
Query: 226 KVSEMLGNVNTSSALSAFEKMEEKVL 251
+ L N N + +AFEK + K L
Sbjct: 98 EFQNTLLNSNGTINKTAFEKAKAKFL 123
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 384
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 148 RKAQLA-LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI-- 204
RKA L L K +L+ +SY LK + +N + +L++NTR E ++
Sbjct: 73 RKASLVKLIKTSPELSESCTWFPESYVIYPTNLKTPVAPAQNGIRHLINNTRTDEREVFL 132
Query: 205 ------QEARSK-----KDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTM 253
+E R K + A+ + +++ SE+L ++ + +K EK L +
Sbjct: 133 AAYNRRREGREGNVWIAKSSAGAKGEGILISSEASELLDFIDEQGQVHVIQKYLEKPLLL 192
Query: 254 E 254
E
Sbjct: 193 E 193
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKR----LENKCKAAEQASEDWYRKAQLALQK 156
+K L QAV M + + R A+ L +++ + + Q DW ++ + AL++
Sbjct: 160 QKPLSQAVKLMLEGITASRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKR 219
Query: 157 GEE---DLAREALKRRKSYADNANAL 179
GEE D+ + LK + D+ L
Sbjct: 220 GEEVPADILTQILKAEEGAQDDEGLL 245
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 776
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 57 APSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEM 111
P S+S + GGA + L+ RL +K+Y +L +D E +++++VL+
Sbjct: 67 VPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLL---KDGEDLMDESVLKF 118
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 57 APSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEM 111
P S+S + GGA + L+ RL +K+Y +L +D E +++++VL+
Sbjct: 51 VPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLL---KDGEDLMDESVLKF 102
>pdb|2AIG|P Chain P, Adamalysin Ii With Peptidomimetic Inhibitor Pol647
pdb|3AIG|A Chain A, Adamalysin Ii With Peptidomimetic Inhibitor Pol656
Length = 202
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 172 YADNANALKAQLDQQKNVVNNLVS--NTRLLESKIQEARSKKDTLKARAQSAKTATKVSE 229
Y + N ++ ++ + N++N N R+ + + E S +D + ++ S+ T
Sbjct: 22 YNSDLNIIRTRVHEIVNIINEFYRSLNIRVSLTDL-EIWSGQDFITIQSSSSNT------ 74
Query: 230 MLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKV 272
L++F + E+VL + D+ LT + EGK+
Sbjct: 75 ----------LNSFGEWRERVLLTRKRHDNAQLLTAINFEGKI 107
>pdb|4AIG|A Chain A, Adamalysin Ii With Phosphonate Inhibitor
Length = 201
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 172 YADNANALKAQLDQQKNVVNNLVS--NTRLLESKIQEARSKKDTLKARAQSAKTATKVSE 229
Y + N ++ ++ + N++N N R+ + + E S +D + ++ S+ T
Sbjct: 21 YNSDLNIIRTRVHEIVNIINEFYRSLNIRVSLTDL-EIWSGQDFITIQSSSSNT------ 73
Query: 230 MLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKV 272
L++F + E+VL + D+ LT + EGK+
Sbjct: 74 ----------LNSFGEWRERVLLTRKRHDNAQLLTAINFEGKI 106
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 396
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 57 APSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEM 111
P S+S + GGA + L+ RL +K+Y +L +D E +++++VL+
Sbjct: 53 VPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLL---KDGEDLMDESVLKF 104
>pdb|1TD9|A Chain A, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|B Chain B, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|C Chain C, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|D Chain D, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|E Chain E, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|F Chain F, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1XCO|A Chain A, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|B Chain B, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|C Chain C, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|D Chain D, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|E Chain E, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|F Chain F, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
Length = 329
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 156 KGEEDLAREALKRRKSYADNANALKAQLDQQ--------KNVVNNLVSNTRLLESKIQEA 207
+G EDL + ++RRK A A KA LD+ K + + LVS A
Sbjct: 82 EGMEDLVQAFVERRKGKATEEQARKALLDENYFGTMLVYKGLADGLVSGA---------A 132
Query: 208 RSKKDTLKARAQSAKTATKVSEMLG 232
S DT++ Q KT V + G
Sbjct: 133 HSTADTVRPALQIIKTKEGVKKTSG 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.123 0.325
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,006,416
Number of Sequences: 62578
Number of extensions: 192206
Number of successful extensions: 637
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 47
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)