BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022758
(292 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03943|IM30_PEA Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum
GN=IM30 PE=2 SV=1
Length = 323
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/275 (75%), Positives = 228/275 (82%), Gaps = 17/275 (6%)
Query: 1 MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNG-GVGALKVTRLRIAPS 59
M K QI +G +P P SSS ++KKPL T+ F V LK +RIA
Sbjct: 1 MTTKFQIFSG--LPSAPLQPSSS--------LLKKPLATTLFGTRPVDTLKFRVMRIAKP 50
Query: 60 SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 119
R GGGA+ RMNLFDR ARVVKSYANA++S+FEDPEKILEQAVLEMNDDL KMR
Sbjct: 51 VR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLTKMR 104
Query: 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179
QATAQVLASQKRLENK KAA+QASE+WYRKAQLALQKGEEDLAREALKRRKS+ADNA++L
Sbjct: 105 QATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASSL 164
Query: 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 239
KAQLDQQK+VV+NLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA
Sbjct: 165 KAQLDQQKSVVDNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 224
Query: 240 LSAFEKMEEKVLTMESQADSLNQLTTDDLEGKVAF 274
LSAFEKMEEKV+TMESQA++L QLTTDDLEGK A
Sbjct: 225 LSAFEKMEEKVMTMESQAEALGQLTTDDLEGKFAM 259
>sp|Q8S0J7|IM30_ORYSJ Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1
Length = 317
Score = 355 bits (910), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 186/263 (70%), Positives = 213/263 (80%), Gaps = 15/263 (5%)
Query: 12 TMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGA 71
++ + P P +S+S + L TSF NG V +L++ ++R + +R C
Sbjct: 9 SLRLAPPPPASAS-------FRRTALRTSFLNGSV-SLRLIQVRQSNVNRFKCN------ 54
Query: 72 LNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKR 131
R NL DR +RVVKSYANA+LSSFEDPEKIL+QAVLEMNDDL KMRQATAQVLASQKR
Sbjct: 55 -GIRSNLLDRFSRVVKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKR 113
Query: 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191
LENK KAAEQAS+DWYR+AQLALQKG+EDLAREALKRRKSYADNA++LKAQLDQQK VV
Sbjct: 114 LENKYKAAEQASDDWYRRAQLALQKGDEDLAREALKRRKSYADNASSLKAQLDQQKGVVE 173
Query: 192 NLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVL 251
NLVSNTR+LESKI EA+ KKDTLKARAQSAKT+TKVSEMLGNVNTS ALSAFEKMEEKV+
Sbjct: 174 NLVSNTRVLESKIAEAKQKKDTLKARAQSAKTSTKVSEMLGNVNTSGALSAFEKMEEKVM 233
Query: 252 TMESQADSLNQLTTDDLEGKVAF 274
MESQA++L QL TDDLEGK A
Sbjct: 234 AMESQAEALGQLATDDLEGKFAL 256
>sp|O80796|VIPP1_ARATH Membrane-associated protein VIPP1, chloroplastic OS=Arabidopsis
thaliana GN=VIPP1 PE=1 SV=1
Length = 330
Score = 347 bits (891), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 188/272 (69%), Positives = 222/272 (81%), Gaps = 6/272 (2%)
Query: 1 MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKK-PLTTSFFNGGVGALKVTRLRIAPS 59
MA K+ VTG P+ P SSS S+SS+ C ++ PL TSFF GAL+V LR+A
Sbjct: 1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACD 60
Query: 60 SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 119
+R C G GA MNLF+R +RVVKSYANA++SSFEDPEKILEQ V+EMN DL KMR
Sbjct: 61 NRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMR 115
Query: 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179
QATAQVLASQK+L+NK KAA+Q+S+DWY++AQLAL KG+EDLAREALKRRKS+ADNA AL
Sbjct: 116 QATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATAL 175
Query: 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 239
K QLDQQK VV+NLVSNTRLLESKIQEA++KKDTL ARA++AKTATKV EM+G VNTS A
Sbjct: 176 KTQLDQQKGVVDNLVSNTRLLESKIQEAKAKKDTLLARARTAKTATKVQEMIGTVNTSGA 235
Query: 240 LSAFEKMEEKVLTMESQADSLNQLTTDDLEGK 271
LSAFEKMEEKV+ MES+AD+L Q+ TD+LEGK
Sbjct: 236 LSAFEKMEEKVMAMESEADALTQIGTDELEGK 267
>sp|Q55707|Y617_SYNY3 Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0617 PE=3 SV=1
Length = 267
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 136/198 (68%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
M LFDRL RVV++ N ++S EDPEK+LEQAV++M +DLV++RQA A+ +A +KR E +
Sbjct: 1 MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQR 60
Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
Q ++ W +A+LAL GEE+LAREAL R+KS D A A + QL QQ+ + NL
Sbjct: 61 LNQDTQEAKKWEDRAKLALTNGEENLAREALARKKSLTDTAAAYQTQLAQQRTMSENLRR 120
Query: 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 255
N LE+KI EA++KK+ L+ARA++AK ++ + LG + TSSA SAFE+ME KVL ME+
Sbjct: 121 NLAALEAKISEAKTKKNMLQARAKAAKANAELQQTLGGLGTSSATSAFERMENKVLDMEA 180
Query: 256 QADSLNQLTTDDLEGKVA 273
+ + +L +E + A
Sbjct: 181 TSQAAGELAGFGIENQFA 198
>sp|Q9RUB7|PSPA_DEIRA Phage shock protein A homolog OS=Deinococcus radiodurans (strain
ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC
15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1473 PE=1
SV=1
Length = 223
Score = 111 bits (277), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 110/191 (57%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
M++FDRL+R++++ N ++S EDP KI++QA+ +M R A +A +LE +
Sbjct: 1 MSIFDRLSRLLRANVNDMISKAEDPAKIIDQALRDMRSAYADARNEVAGAMAQAAKLERE 60
Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
+ + ++ +KA+ AL+ G EDLAREAL+R +++ D A Q Q++ V+ L +
Sbjct: 61 AGTNSKLAAEYEKKAEEALRGGSEDLAREALRRAQNHKDLAKGFDEQRTVQQSTVDQLKT 120
Query: 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 255
R LE+KI E SKK L AR ++A+ + + G A+ AF +ME+KV ME
Sbjct: 121 QLRALEAKIDEMESKKTLLAARQKTAQAGETLDRVSGFSKAGGAMDAFNEMEQKVAGMED 180
Query: 256 QADSLNQLTTD 266
+ ++ +L D
Sbjct: 181 RNKAMGELRND 191
>sp|P0AFM8|PSPA_SHIFL Phage shock protein A OS=Shigella flexneri GN=pspA PE=3 SV=2
Length = 222
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 102/184 (55%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
M +F R A +V + NA+L EDP+K++ + EM D LV++R +A+ LA +K+L +
Sbjct: 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRR 60
Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
+ A +W KA+LAL K EDLAR AL ++ D +L+ ++ + + +
Sbjct: 61 IEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKK 120
Query: 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 255
LE+K+ E R+++ L R Q+A ++ V L + A++ FE E ++ ME+
Sbjct: 121 EIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA 180
Query: 256 QADS 259
+A+S
Sbjct: 181 EAES 184
>sp|P0AFM6|PSPA_ECOLI Phage shock protein A OS=Escherichia coli (strain K12) GN=pspA PE=1
SV=2
Length = 222
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 102/184 (55%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
M +F R A +V + NA+L EDP+K++ + EM D LV++R +A+ LA +K+L +
Sbjct: 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRR 60
Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
+ A +W KA+LAL K EDLAR AL ++ D +L+ ++ + + +
Sbjct: 61 IEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKK 120
Query: 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 255
LE+K+ E R+++ L R Q+A ++ V L + A++ FE E ++ ME+
Sbjct: 121 EIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA 180
Query: 256 QADS 259
+A+S
Sbjct: 181 EAES 184
>sp|P0AFM7|PSPA_ECO57 Phage shock protein A OS=Escherichia coli O157:H7 GN=pspA PE=3 SV=2
Length = 222
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 102/184 (55%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
M +F R A +V + NA+L EDP+K++ + EM D LV++R +A+ LA +K+L +
Sbjct: 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRR 60
Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
+ A +W KA+LAL K EDLAR AL ++ D +L+ ++ + + +
Sbjct: 61 IEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKK 120
Query: 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 255
LE+K+ E R+++ L R Q+A ++ V L + A++ FE E ++ ME+
Sbjct: 121 EIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA 180
Query: 256 QADS 259
+A+S
Sbjct: 181 EAES 184
>sp|O32201|LIAH_BACSU Protein LiaH OS=Bacillus subtilis (strain 168) GN=liaH PE=2 SV=1
Length = 225
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%)
Query: 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153
L E+P+ +L Q V +M D+ K +Q + + + K + A + + +AQLA
Sbjct: 18 LDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKYEEAAEVAGKRKNQAQLA 77
Query: 154 LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213
GEE+LA++AL K A KA +Q + + +L LE+K+Q+ + KK
Sbjct: 78 FDAGEEELAKKALTEMKYLEGKAAEHKASYEQANSQLADLKEQLAALETKLQDVKDKKQA 137
Query: 214 LKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQAD 258
L ARA +AK ++ +++ SA F ++E ++ ME +A+
Sbjct: 138 LIARANAAKAKEHMNTTFDKIDSESAYREFLRIENRIEEMEIRAN 182
>sp|P54617|PSPA_BACSU Phage shock protein A homolog OS=Bacillus subtilis (strain 168)
GN=ydjF PE=1 SV=3
Length = 227
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 115/208 (55%), Gaps = 26/208 (12%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLE-- 133
M++ R ++ + NA+L E+PEK+++Q + MN DL K++ TA V+A ++R +
Sbjct: 1 MSIIGRFKDIMSANINALLDKAENPEKMVDQYLRNMNSDLAKVKAETAAVMAEEQRAKRE 60
Query: 134 -NKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA-------QLDQ 185
++C+A + E + K ALQ G E AR+ L+R+ S + L+A Q
Sbjct: 61 YHECQADMEKMESYAMK---ALQAGNESDARKFLERKTSLESKLSELQAANQIAATNAAQ 117
Query: 186 QKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLG--NVNTSSALSAF 243
+ + + LVS+ I E ++K+ +KA+ AKT ++++ LG +TS ++SAF
Sbjct: 118 MRKMHDKLVSD-------IGELEARKNMIKAKWAVAKTQERMNK-LGASVSSTSQSMSAF 169
Query: 244 EKMEEKVLTMESQADSLNQLTT---DDL 268
+ME+KV QA+++ +L + DD+
Sbjct: 170 GRMEDKVNKALDQANAMAELNSAPQDDM 197
>sp|Q9PTG8|TACC3_XENLA Transforming acidic coiled-coil-containing protein 3 OS=Xenopus
laevis GN=tacc3 PE=1 SV=2
Length = 931
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 81 RLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQ-------KRLE 133
+ +++ + I ED ++ E A LE+N L + +Q + + + KRLE
Sbjct: 764 EMGKIIAEFEGTITQILEDSQRQKETAKLELNKVLQEKQQVQVDLNSMETSFSELFKRLE 823
Query: 134 NKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193
+ +A E YRK + AL+K ED K + Y ALKA +++ N N
Sbjct: 824 KQKEALE-----GYRKNEEALKKCVEDYLVRIKKEEQRY----QALKAHAEEKLNRANEE 874
Query: 194 VSNTR 198
+++ R
Sbjct: 875 IAHVR 879
>sp|B6J0K5|PNP_COXB2 Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain CbuG_Q212) GN=pnp PE=3 SV=1
Length = 696
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 110/264 (41%), Gaps = 37/264 (14%)
Query: 42 FNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMN-LFDR-LARVVKSYANAIL----S 95
FNG +GA +V YR G LN ++ L D L VV +A+L
Sbjct: 144 FNGSLGAARV------------GYRGGEYLLNPSLDELKDSALDLVVAGTRDAVLMVESE 191
Query: 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVL--ASQKRLENKCKAAEQASEDWY-RKAQL 152
+ E PE ++ AVL + + QA A+ + A + E + A E W K++
Sbjct: 192 AQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTALEKWVVEKSEA 251
Query: 153 ALQKG---EEDLAREA---LKRRKSYADNANALKAQLDQQKNVVNN--LVSNTRLLESKI 204
L+K +E AR+A R + AD A A+ + ++N VN L LE +I
Sbjct: 252 PLKKAYQIQEKTARQAQIQAIRDQLLADRA----AEREGEENAVNEHELAVIFHELERRI 307
Query: 205 QEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLT 264
+ + + +KT ++ +G + S + F + E + L + + + +
Sbjct: 308 VREQILTGQPRIDGRDSKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQS 367
Query: 265 TDDLEGKVAFTSFSFSIFAFKFLP 288
DDL+G F IF + F P
Sbjct: 368 IDDLDGD---RQEEF-IFHYNFPP 387
>sp|Q19782|IFD2_CAEEL Intermediate filament protein ifd-2 OS=Caenorhabditis elegans
GN=ifd-2 PE=3 SV=1
Length = 443
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 131 RLENKCKAAEQASEDWYRKAQLALQKGEE------DLAREALKRRKSYADNANALKAQLD 184
R E +AA + EDWY K ++KG E + ARE + R +S N + +L
Sbjct: 269 RFEKDSRAARKTWEDWYHKKITEIKKGSESYSSIQNQAREEILRIRSI---VNEFRGKLS 325
Query: 185 QQKNVVNNLV-----------SNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGN 233
+ + L+ N RL E + E + +K R + K + ++ +++ N
Sbjct: 326 DSETINQQLIKRIDDLHFQDKENLRLFEIALNEKENL--VIKMREECTKLSVELDKLVEN 383
Query: 234 -VNTSSALSAFEKMEE 248
+N + ++ + K+ E
Sbjct: 384 QINLRNEINHYRKLME 399
>sp|Q83D87|PNP_COXBU Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain RSA 493 / Nine Mile phase I) GN=pnp PE=3 SV=1
Length = 696
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 109/264 (41%), Gaps = 37/264 (14%)
Query: 42 FNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMN-LFDR-LARVVKSYANAIL----S 95
FNG +GA +V YR G LN ++ L D L VV +A+L
Sbjct: 144 FNGSLGAARV------------GYRGGEYLLNPSLDELKDSALDLVVAGTRDAVLMVESE 191
Query: 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVL--ASQKRLENKCKAAEQASEDWY-RKAQL 152
+ E PE ++ AVL + + QA A+ + A + E + A E W K++
Sbjct: 192 AQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTALEKWVVEKSEA 251
Query: 153 ALQKG---EEDLAREA---LKRRKSYADNANALKAQLDQQKNVVNN--LVSNTRLLESKI 204
L+K +E AR+A R + AD A A+ + ++N VN L LE +I
Sbjct: 252 PLKKAYQIQEKTARQAQIQAIRDQLLADRA----AEREGEENAVNEHELAVIFHELERRI 307
Query: 205 QEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLT 264
+ + + KT ++ +G + S + F + E + L + + + +
Sbjct: 308 VREQILTGQPRIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQS 367
Query: 265 TDDLEGKVAFTSFSFSIFAFKFLP 288
DDL+G F IF + F P
Sbjct: 368 IDDLDGD---RQEEF-IFHYNFPP 387
>sp|A9ND62|PNP_COXBR Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain RSA 331 / Henzerling II) GN=pnp PE=3 SV=1
Length = 696
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 109/264 (41%), Gaps = 37/264 (14%)
Query: 42 FNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMN-LFDR-LARVVKSYANAIL----S 95
FNG +GA +V YR G LN ++ L D L VV +A+L
Sbjct: 144 FNGSLGAARV------------GYRGGEYLLNPSLDELKDSALDLVVAGTRDAVLMVESE 191
Query: 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVL--ASQKRLENKCKAAEQASEDWY-RKAQL 152
+ E PE ++ AVL + + QA A+ + A + E + A E W K++
Sbjct: 192 AQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTALEKWVVEKSEA 251
Query: 153 ALQKG---EEDLAREA---LKRRKSYADNANALKAQLDQQKNVVNN--LVSNTRLLESKI 204
L+K +E AR+A R + AD A A+ + ++N VN L LE +I
Sbjct: 252 PLKKAYQIQEKTARQAQIQAIRDQLLADRA----AEREGEENAVNEHELAVIFHELERRI 307
Query: 205 QEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLT 264
+ + + KT ++ +G + S + F + E + L + + + +
Sbjct: 308 VREQILTGQPRIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQS 367
Query: 265 TDDLEGKVAFTSFSFSIFAFKFLP 288
DDL+G F IF + F P
Sbjct: 368 IDDLDGD---RQEEF-IFHYNFPP 387
>sp|A9KFK6|PNP_COXBN Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain Dugway 5J108-111) GN=pnp PE=3 SV=1
Length = 696
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 109/264 (41%), Gaps = 37/264 (14%)
Query: 42 FNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMN-LFDR-LARVVKSYANAIL----S 95
FNG +GA +V YR G LN ++ L D L VV +A+L
Sbjct: 144 FNGSLGAARV------------GYRGGEYLLNPSLDELKDSALDLVVAGTRDAVLMVESE 191
Query: 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVL--ASQKRLENKCKAAEQASEDWY-RKAQL 152
+ E PE ++ AVL + + QA A+ + A + E + A E W K++
Sbjct: 192 AQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTALEKWVVEKSEA 251
Query: 153 ALQKG---EEDLAREA---LKRRKSYADNANALKAQLDQQKNVVNN--LVSNTRLLESKI 204
L+K +E AR+A R + AD A A+ + ++N VN L LE +I
Sbjct: 252 PLKKAYQIQEKTARQAQIQAIRDQLLADRA----AEREGEENAVNEHELAVIFHELERRI 307
Query: 205 QEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLT 264
+ + + KT ++ +G + S + F + E + L + + + +
Sbjct: 308 VREQILTGQPRIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQS 367
Query: 265 TDDLEGKVAFTSFSFSIFAFKFLP 288
DDL+G F IF + F P
Sbjct: 368 IDDLDGD---RQEEF-IFHYNFPP 387
>sp|P24759|ATI_VACCW A-type inclusion protein A25 OS=Vaccinia virus (strain Western
Reserve) GN=VACWR148 PE=1 SV=2
Length = 725
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 25/153 (16%)
Query: 79 FDRLARVVKSYANAILSSFEDPEKILE---QAVLEMNDDLVKMRQATAQV-----LASQK 130
DRL + +K + + I + +D +LE + + E+ + L + R+ +++
Sbjct: 462 IDRLTKEIKEHRD-IQNGTDDGSDLLEIDKKTIRELRESLDREREMRSELEKELDTIRNG 520
Query: 131 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR---------KSYADNANALKA 181
+++ C+ + S W L++ ++DL E KRR + + K
Sbjct: 521 KVDGSCQRELELSRMW-------LKQRDDDLRAEIDKRRNVEWELSRLRRDIKECDKYKE 573
Query: 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214
LD+ K ++N VS LES+I + + +DTL
Sbjct: 574 DLDKAKTTISNYVSKISTLESEIAKYQQDRDTL 606
>sp|Q9PQF2|DNAK_UREPA Chaperone protein DnaK OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=dnaK PE=3 SV=1
Length = 603
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 26/204 (12%)
Query: 36 PLTTSFFN-GGVGALKVTRLRIAPSSRSHCYRQGGG---ALNTRMNLFDR-LARVVKSYA 90
PLT S GGV + R P S+S + +++ R+ +R LA K
Sbjct: 369 PLTLSIETMGGVATPLIPRNTKIPVSKSQIFSTAADNQPSVDIRIVQGERSLAADNKLLG 428
Query: 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150
N LS E + + Q ++ N D + A+ L +QK K ++ S+D K
Sbjct: 429 NFELSGIEPAPRGVPQIEIKFNIDANGIMSVNAKDLKTQKETSITIKDSQGLSQDEIDK- 487
Query: 151 QLALQKGEEDLAREA-LKRRKSYADNANALKAQLDQ----------QKNVVNNLVSNTRL 199
+++ EE+ ++A +K + + A++L QL+Q QK+V N + +
Sbjct: 488 --MIKEAEENKEKDAKVKHERELVNRADSLINQLEQVSKTENVPQEQKDVFNKQIED--- 542
Query: 200 LESKIQEARSKKDTLKARAQSAKT 223
+ AR +D +K A+ K
Sbjct: 543 ----LTNARDAQDYVKLEAEVKKV 562
>sp|B1AIX8|DNAK_UREP2 Chaperone protein DnaK OS=Ureaplasma parvum serovar 3 (strain ATCC
27815 / 27 / NCTC 11736) GN=dnaK PE=3 SV=1
Length = 603
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 26/204 (12%)
Query: 36 PLTTSFFN-GGVGALKVTRLRIAPSSRSHCYRQGGG---ALNTRMNLFDR-LARVVKSYA 90
PLT S GGV + R P S+S + +++ R+ +R LA K
Sbjct: 369 PLTLSIETMGGVATPLIPRNTKIPVSKSQIFSTAADNQPSVDIRIVQGERSLAADNKLLG 428
Query: 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150
N LS E + + Q ++ N D + A+ L +QK K ++ S+D K
Sbjct: 429 NFELSGIEPAPRGVPQIEIKFNIDANGIMSVNAKDLKTQKETSITIKDSQGLSQDEIDK- 487
Query: 151 QLALQKGEEDLAREA-LKRRKSYADNANALKAQLDQ----------QKNVVNNLVSNTRL 199
+++ EE+ ++A +K + + A++L QL+Q QK+V N + +
Sbjct: 488 --MIKEAEENKEKDAKVKHERELVNRADSLINQLEQVSKTENVPQEQKDVFNKQIED--- 542
Query: 200 LESKIQEARSKKDTLKARAQSAKT 223
+ AR +D +K A+ K
Sbjct: 543 ----LTNARDAQDYVKLEAEVKKV 562
>sp|P34011|ATI_VAR67 A-type inclusion protein A25 homolog OS=Variola virus (isolate
Human/India/Ind3/1967) GN=A28L PE=3 SV=1
Length = 702
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 131 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR---------KSYADNANALKA 181
+++ C+ + S W L++ ++DL E KRR + + K
Sbjct: 522 KVDGSCQGRLELSRMW-------LKQRDDDLRAEIDKRRNVEWELSKLRRDIKECDKYKE 574
Query: 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216
+LD+ K ++N VS LES+I + + +DTL A
Sbjct: 575 ELDKAKTTISNYVSRISTLESEIAKYQQDRDTLSA 609
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.122 0.320
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,667,455
Number of Sequences: 539616
Number of extensions: 2979920
Number of successful extensions: 16922
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 644
Number of HSP's that attempted gapping in prelim test: 16178
Number of HSP's gapped (non-prelim): 1317
length of query: 292
length of database: 191,569,459
effective HSP length: 116
effective length of query: 176
effective length of database: 128,974,003
effective search space: 22699424528
effective search space used: 22699424528
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)