Query 022758
Match_columns 292
No_of_seqs 149 out of 857
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:55:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10698 phage shock protein P 100.0 2.3E-45 5.1E-50 331.2 29.2 207 76-282 1-207 (222)
2 TIGR02977 phageshock_pspA phag 100.0 1.7E-43 3.8E-48 318.4 29.5 207 76-282 1-207 (219)
3 COG1842 PspA Phage shock prote 100.0 2.5E-41 5.4E-46 304.9 29.1 207 76-282 1-210 (225)
4 PF04012 PspA_IM30: PspA/IM30 100.0 3.6E-41 7.7E-46 302.7 29.1 205 77-281 1-207 (221)
5 PTZ00446 vacuolar sorting prot 98.6 1.1E-05 2.3E-10 71.7 18.7 144 122-279 29-177 (191)
6 PF03357 Snf7: Snf7; InterPro 98.3 1.6E-05 3.4E-10 68.0 12.6 157 121-291 2-167 (171)
7 KOG1656 Protein involved in gl 98.2 0.00014 3.1E-09 64.6 16.3 108 158-279 59-173 (221)
8 PTZ00464 SNF-7-like protein; P 97.9 0.0019 4.1E-08 58.3 17.8 107 159-279 60-173 (211)
9 KOG2911 Uncharacterized conser 97.8 0.0021 4.5E-08 63.0 17.8 154 115-281 228-388 (439)
10 PRK10698 phage shock protein P 97.2 0.052 1.1E-06 49.3 18.3 165 104-277 36-215 (222)
11 TIGR02977 phageshock_pspA phag 96.9 0.12 2.7E-06 46.6 18.1 70 147-221 84-153 (219)
12 KOG2910 Uncharacterized conser 96.9 0.22 4.7E-06 44.3 18.1 71 124-194 20-90 (209)
13 PF04012 PspA_IM30: PspA/IM30 96.8 0.37 8E-06 43.2 21.0 145 79-228 7-159 (221)
14 COG1842 PspA Phage shock prote 96.5 0.45 9.7E-06 43.5 18.1 60 173-232 91-150 (225)
15 PF08317 Spc7: Spc7 kinetochor 96.4 0.36 7.7E-06 46.2 18.2 139 104-257 154-292 (325)
16 KOG0996 Structural maintenance 96.3 1.5 3.3E-05 48.2 23.6 146 104-262 804-963 (1293)
17 PRK09039 hypothetical protein; 96.0 1.1 2.3E-05 43.4 19.0 48 176-223 139-186 (343)
18 PRK04863 mukB cell division pr 95.9 3.2 6.9E-05 47.5 25.0 113 101-214 282-395 (1486)
19 KOG0971 Microtubule-associated 95.8 3.4 7.4E-05 44.6 24.4 126 73-201 224-352 (1243)
20 PRK09039 hypothetical protein; 95.7 0.99 2.1E-05 43.6 17.6 47 169-215 139-185 (343)
21 PF08317 Spc7: Spc7 kinetochor 95.6 1.5 3.2E-05 42.0 18.0 41 175-215 210-250 (325)
22 KOG0971 Microtubule-associated 95.4 5.1 0.00011 43.4 22.1 117 68-187 359-475 (1243)
23 TIGR00606 rad50 rad50. This fa 95.2 2.3 5E-05 48.0 20.8 55 165-219 879-933 (1311)
24 KOG3230 Vacuolar assembly/sort 95.0 2.5 5.4E-05 37.9 16.7 111 93-235 3-113 (224)
25 PF12128 DUF3584: Protein of u 94.9 7.3 0.00016 43.7 23.5 59 101-159 623-681 (1201)
26 COG1196 Smc Chromosome segrega 94.9 8 0.00017 43.2 23.6 11 266-276 887-897 (1163)
27 COG4372 Uncharacterized protei 94.9 4.4 9.6E-05 39.9 23.3 52 101-152 118-169 (499)
28 KOG0994 Extracellular matrix g 94.6 3.5 7.5E-05 45.7 18.8 38 104-141 1568-1605(1758)
29 PF00261 Tropomyosin: Tropomyo 94.6 3.5 7.7E-05 37.5 23.5 11 266-276 225-235 (237)
30 COG1196 Smc Chromosome segrega 94.5 5.2 0.00011 44.7 21.0 16 245-260 946-961 (1163)
31 PF12718 Tropomyosin_1: Tropom 94.5 2.7 5.8E-05 35.6 18.6 55 99-153 14-68 (143)
32 PRK02224 chromosome segregatio 94.4 8.6 0.00019 41.3 24.9 42 115-156 525-566 (880)
33 PF10168 Nup88: Nuclear pore c 94.2 8.5 0.00018 41.0 20.9 147 77-224 504-668 (717)
34 PRK11637 AmiB activator; Provi 94.1 6.6 0.00014 38.8 22.6 41 104-144 80-120 (428)
35 TIGR02169 SMC_prok_A chromosom 94.0 11 0.00025 41.1 23.6 6 62-67 646-651 (1164)
36 KOG1655 Protein involved in va 93.6 5.1 0.00011 35.9 15.4 22 161-182 64-85 (218)
37 PF00261 Tropomyosin: Tropomyo 93.6 5.6 0.00012 36.2 18.5 153 101-263 80-234 (237)
38 smart00787 Spc7 Spc7 kinetocho 93.5 7.3 0.00016 37.3 20.4 138 104-256 149-286 (312)
39 PRK02224 chromosome segregatio 93.4 13 0.00028 39.9 23.3 33 114-146 207-239 (880)
40 PF15619 Lebercilin: Ciliary p 93.3 5.6 0.00012 35.5 18.7 71 81-151 36-106 (194)
41 KOG0994 Extracellular matrix g 93.3 7.7 0.00017 43.2 18.4 20 86-105 1516-1535(1758)
42 KOG0804 Cytoplasmic Zn-finger 93.0 5.9 0.00013 39.7 15.9 105 100-219 333-452 (493)
43 PRK10884 SH3 domain-containing 92.9 2.9 6.2E-05 37.7 12.8 58 176-233 120-177 (206)
44 KOG0977 Nuclear envelope prote 92.9 6.9 0.00015 40.2 16.7 97 113-209 92-190 (546)
45 PF10174 Cast: RIM-binding pro 92.8 11 0.00024 40.4 18.9 123 90-221 229-355 (775)
46 KOG0161 Myosin class II heavy 92.8 24 0.00052 41.6 22.5 50 104-153 962-1011(1930)
47 PF00038 Filament: Intermediat 92.8 8.5 0.00018 36.0 17.0 105 85-208 29-137 (312)
48 PF09726 Macoilin: Transmembra 92.6 15 0.00032 39.1 19.4 53 97-149 451-510 (697)
49 PRK04863 mukB cell division pr 92.6 6.3 0.00014 45.2 17.6 117 102-218 988-1118(1486)
50 TIGR03319 YmdA_YtgF conserved 92.3 5.4 0.00012 40.8 15.3 48 101-148 35-83 (514)
51 KOG0250 DNA repair protein RAD 92.2 21 0.00046 39.4 20.2 45 170-214 397-441 (1074)
52 TIGR02231 conserved hypothetic 92.2 1.7 3.8E-05 44.0 11.8 99 107-213 72-170 (525)
53 smart00787 Spc7 Spc7 kinetocho 92.0 12 0.00026 35.9 18.6 20 128-147 145-164 (312)
54 KOG0250 DNA repair protein RAD 91.9 24 0.00051 39.0 22.3 118 101-222 677-796 (1074)
55 KOG0804 Cytoplasmic Zn-finger 91.9 6.4 0.00014 39.4 14.6 67 169-235 384-452 (493)
56 KOG0963 Transcription factor/C 91.6 19 0.00042 37.4 20.5 104 107-217 122-225 (629)
57 PRK04778 septation ring format 91.5 19 0.00041 37.1 21.4 52 99-150 282-333 (569)
58 PRK12704 phosphodiesterase; Pr 90.9 21 0.00045 36.6 18.5 49 100-148 40-89 (520)
59 KOG0979 Structural maintenance 90.8 21 0.00045 39.2 18.1 142 110-258 185-328 (1072)
60 KOG0980 Actin-binding protein 90.5 29 0.00064 37.6 19.9 46 176-221 412-457 (980)
61 PRK11637 AmiB activator; Provi 90.4 19 0.00042 35.5 21.5 40 103-142 86-125 (428)
62 TIGR01843 type_I_hlyD type I s 90.2 18 0.00039 34.7 17.6 11 44-54 52-62 (423)
63 PF09726 Macoilin: Transmembra 90.2 28 0.00062 37.0 20.5 58 96-153 422-479 (697)
64 PF06785 UPF0242: Uncharacteri 89.7 8 0.00017 37.4 12.6 91 120-218 134-224 (401)
65 PF12325 TMF_TATA_bd: TATA ele 89.7 11 0.00023 31.3 14.8 92 104-218 21-112 (120)
66 TIGR03007 pepcterm_ChnLen poly 89.6 24 0.00051 35.3 19.1 117 99-217 132-269 (498)
67 PF13166 AAA_13: AAA domain 89.5 27 0.00059 36.4 17.9 62 173-234 409-471 (712)
68 TIGR01005 eps_transp_fam exopo 89.5 21 0.00046 37.8 17.2 112 106-225 288-406 (754)
69 TIGR00606 rad50 rad50. This fa 89.4 43 0.00094 38.0 22.5 37 179-215 982-1018(1311)
70 PF10168 Nup88: Nuclear pore c 89.4 10 0.00022 40.3 14.7 77 77-153 539-619 (717)
71 PRK03918 chromosome segregatio 89.0 36 0.00077 36.5 24.6 18 77-94 124-141 (880)
72 TIGR03752 conj_TIGR03752 integ 88.4 7.2 0.00016 39.3 11.9 52 107-158 60-111 (472)
73 PF12128 DUF3584: Protein of u 88.4 49 0.0011 37.3 20.4 55 102-156 631-685 (1201)
74 PHA02562 46 endonuclease subun 88.0 32 0.00069 34.7 21.1 21 240-260 298-318 (562)
75 PF05667 DUF812: Protein of un 87.9 38 0.00081 35.4 18.9 41 105-145 327-367 (594)
76 KOG1029 Endocytic adaptor prot 87.9 20 0.00042 38.5 15.0 40 176-215 418-457 (1118)
77 PF05384 DegS: Sensor protein 87.6 18 0.00039 31.4 19.5 77 104-184 25-101 (159)
78 PF10046 BLOC1_2: Biogenesis o 87.4 13 0.00027 29.5 13.1 95 78-206 4-98 (99)
79 PF03148 Tektin: Tektin family 87.1 32 0.00069 33.7 17.6 127 80-206 225-363 (384)
80 KOG0982 Centrosomal protein Nu 87.1 35 0.00076 34.2 16.3 130 104-233 227-364 (502)
81 COG1579 Zn-ribbon protein, pos 87.0 25 0.00055 32.5 19.6 129 89-217 14-146 (239)
82 PF00769 ERM: Ezrin/radixin/mo 86.7 26 0.00056 32.3 17.9 107 102-209 8-117 (246)
83 PF06160 EzrA: Septation ring 86.6 42 0.00091 34.6 18.4 70 102-171 104-201 (560)
84 TIGR03017 EpsF chain length de 86.5 35 0.00075 33.5 16.4 29 196-224 343-371 (444)
85 TIGR01010 BexC_CtrB_KpsE polys 86.0 33 0.00072 32.9 17.6 127 81-213 113-260 (362)
86 KOG2685 Cystoskeletal protein 85.8 40 0.00086 33.6 15.4 128 78-205 250-389 (421)
87 PF12718 Tropomyosin_1: Tropom 85.4 21 0.00046 30.1 17.6 123 86-217 5-130 (143)
88 TIGR01843 type_I_hlyD type I s 85.0 37 0.0008 32.6 20.8 18 131-148 148-165 (423)
89 KOG0976 Rho/Rac1-interacting s 84.8 63 0.0014 35.0 20.5 13 204-216 419-431 (1265)
90 KOG0161 Myosin class II heavy 84.5 96 0.0021 36.9 21.8 106 101-218 1578-1683(1930)
91 PRK13729 conjugal transfer pil 84.5 4.4 9.5E-05 40.9 8.1 53 171-223 73-125 (475)
92 COG1382 GimC Prefoldin, chaper 84.5 22 0.00047 29.4 14.8 99 107-212 7-108 (119)
93 PF03194 LUC7: LUC7 N_terminus 84.3 13 0.00028 34.5 10.7 83 100-182 84-171 (254)
94 PRK07720 fliJ flagellar biosyn 84.1 23 0.00051 29.5 16.6 95 111-211 14-108 (146)
95 PF05816 TelA: Toxic anion res 84.1 41 0.00089 32.3 16.0 63 76-138 72-134 (333)
96 COG1566 EmrA Multidrug resista 84.0 37 0.00079 33.2 14.1 39 110-148 88-126 (352)
97 PF13851 GAS: Growth-arrest sp 83.8 32 0.00069 30.8 22.1 124 81-220 9-132 (201)
98 KOG0996 Structural maintenance 83.7 65 0.0014 36.2 16.9 91 122-217 937-1034(1293)
99 COG4942 Membrane-bound metallo 83.5 51 0.0011 32.9 20.1 111 94-212 136-248 (420)
100 PRK09343 prefoldin subunit bet 83.5 23 0.00051 29.0 13.2 44 104-147 5-48 (121)
101 PF10046 BLOC1_2: Biogenesis o 83.1 21 0.00045 28.2 11.4 35 240-275 65-99 (99)
102 CHL00118 atpG ATP synthase CF0 83.0 28 0.0006 29.5 14.1 54 99-152 45-99 (156)
103 TIGR03007 pepcterm_ChnLen poly 83.0 53 0.0012 32.8 15.9 60 168-227 318-387 (498)
104 KOG3232 Vacuolar assembly/sort 82.9 33 0.00072 30.3 15.9 108 128-260 17-135 (203)
105 PF08614 ATG16: Autophagy prot 82.9 33 0.0007 30.2 13.1 50 169-218 132-181 (194)
106 PF05701 WEMBL: Weak chloropla 82.9 59 0.0013 33.2 19.7 44 102-145 305-348 (522)
107 PRK00846 hypothetical protein; 82.8 13 0.00029 28.3 8.4 55 168-222 7-61 (77)
108 PRK11281 hypothetical protein; 82.8 43 0.00094 37.5 15.6 45 86-131 41-88 (1113)
109 PRK08476 F0F1 ATP synthase sub 82.6 28 0.0006 29.2 13.9 46 102-147 34-79 (141)
110 PF04102 SlyX: SlyX; InterPro 82.5 10 0.00022 28.0 7.6 50 172-221 2-51 (69)
111 PF06637 PV-1: PV-1 protein (P 82.5 41 0.00088 33.3 13.5 13 241-253 416-428 (442)
112 COG3883 Uncharacterized protei 82.5 14 0.0003 34.7 10.0 15 210-224 99-113 (265)
113 PRK00409 recombination and DNA 82.2 48 0.001 35.7 15.4 54 103-156 517-570 (782)
114 KOG0995 Centromere-associated 82.2 66 0.0014 33.3 20.5 64 99-163 257-322 (581)
115 KOG0249 LAR-interacting protei 82.2 18 0.00038 38.5 11.5 45 164-208 213-257 (916)
116 KOG0946 ER-Golgi vesicle-tethe 82.1 51 0.0011 35.6 14.9 91 125-215 749-840 (970)
117 TIGR02680 conserved hypothetic 81.7 1E+02 0.0023 35.3 21.1 36 180-215 881-916 (1353)
118 PF06810 Phage_GP20: Phage min 81.7 19 0.00042 30.9 10.1 97 173-279 26-132 (155)
119 PF05266 DUF724: Protein of un 81.2 39 0.00085 30.0 16.7 35 68-109 42-76 (190)
120 PF06120 Phage_HK97_TLTM: Tail 81.2 52 0.0011 31.4 18.6 105 110-215 71-175 (301)
121 TIGR03185 DNA_S_dndD DNA sulfu 81.1 75 0.0016 33.2 18.9 76 132-210 396-471 (650)
122 KOG1003 Actin filament-coating 80.8 42 0.00092 30.2 15.0 52 102-153 105-156 (205)
123 PRK15422 septal ring assembly 80.8 23 0.0005 27.2 9.0 62 95-156 14-75 (79)
124 PF11180 DUF2968: Protein of u 80.5 42 0.00092 30.0 15.4 85 115-204 100-184 (192)
125 PRK09174 F0F1 ATP synthase sub 80.4 43 0.00093 30.0 14.1 56 99-154 76-132 (204)
126 PF03357 Snf7: Snf7; InterPro 80.4 33 0.00072 28.7 12.1 86 130-233 4-89 (171)
127 PRK04406 hypothetical protein; 80.2 21 0.00045 27.0 8.7 50 171-220 8-57 (75)
128 PRK00736 hypothetical protein; 80.0 15 0.00033 27.1 7.8 49 172-220 3-51 (68)
129 COG1579 Zn-ribbon protein, pos 79.9 51 0.0011 30.5 19.1 42 175-216 90-131 (239)
130 PF10186 Atg14: UV radiation r 79.8 48 0.0011 30.2 16.5 43 169-211 65-107 (302)
131 KOG0964 Structural maintenance 79.6 1.1E+02 0.0023 34.0 17.3 100 178-277 255-370 (1200)
132 COG2433 Uncharacterized conser 79.4 86 0.0019 32.9 16.2 102 119-222 344-463 (652)
133 PF13514 AAA_27: AAA domain 79.2 1.1E+02 0.0024 34.1 24.0 31 126-156 742-772 (1111)
134 PF05103 DivIVA: DivIVA protei 79.0 1.3 2.8E-05 36.1 1.9 49 104-152 23-71 (131)
135 PRK13454 F0F1 ATP synthase sub 79.0 43 0.00094 29.2 13.7 57 99-155 54-111 (181)
136 TIGR03545 conserved hypothetic 78.9 30 0.00066 35.7 12.1 57 95-152 146-202 (555)
137 PRK04325 hypothetical protein; 78.9 22 0.00049 26.7 8.5 50 171-220 6-55 (74)
138 cd07664 BAR_SNX2 The Bin/Amphi 78.8 53 0.0012 30.1 20.0 64 78-145 2-68 (234)
139 COG4942 Membrane-bound metallo 78.7 75 0.0016 31.8 22.5 50 99-148 59-108 (420)
140 PRK00295 hypothetical protein; 78.7 23 0.0005 26.2 8.3 49 172-220 3-51 (68)
141 KOG2991 Splicing regulator [RN 78.4 61 0.0013 30.5 14.3 88 165-258 106-194 (330)
142 COG3074 Uncharacterized protei 78.4 25 0.00053 26.5 8.2 63 94-156 13-75 (79)
143 PF05010 TACC: Transforming ac 78.3 52 0.0011 29.7 18.3 52 169-220 85-136 (207)
144 PLN02718 Probable galacturonos 78.0 14 0.0003 38.5 9.2 108 99-210 158-265 (603)
145 PF08826 DMPK_coil: DMPK coile 77.9 24 0.00053 25.7 8.6 46 170-215 14-59 (61)
146 PF04728 LPP: Lipoprotein leuc 77.9 22 0.00049 25.5 7.7 15 216-230 36-50 (56)
147 KOG0977 Nuclear envelope prote 77.6 92 0.002 32.2 16.9 99 100-198 86-193 (546)
148 PRK02793 phi X174 lysis protei 77.4 23 0.00051 26.5 8.1 49 172-220 6-54 (72)
149 PRK04778 septation ring format 77.3 92 0.002 32.1 22.3 23 237-259 444-466 (569)
150 PRK10884 SH3 domain-containing 77.3 55 0.0012 29.5 13.0 18 108-125 95-112 (206)
151 PRK05689 fliJ flagellar biosyn 77.2 41 0.00088 27.9 16.4 96 110-211 13-108 (147)
152 PF12761 End3: Actin cytoskele 77.2 45 0.00097 29.9 11.1 24 101-124 98-121 (195)
153 PF05667 DUF812: Protein of un 77.0 1E+02 0.0022 32.3 19.4 86 102-188 331-422 (594)
154 PF04156 IncA: IncA protein; 76.9 48 0.001 28.6 15.0 22 173-194 129-150 (191)
155 smart00685 DM14 Repeats in fly 76.8 12 0.00027 27.1 6.2 44 137-180 2-45 (59)
156 PRK02119 hypothetical protein; 76.8 29 0.00063 26.1 8.5 51 170-220 5-55 (73)
157 PF10498 IFT57: Intra-flagella 76.6 79 0.0017 30.9 18.8 135 116-260 216-354 (359)
158 PF04111 APG6: Autophagy prote 76.2 74 0.0016 30.4 14.8 20 199-218 103-122 (314)
159 TIGR02680 conserved hypothetic 75.6 1.6E+02 0.0034 33.9 24.5 44 174-217 340-383 (1353)
160 PF05103 DivIVA: DivIVA protei 75.5 0.9 1.9E-05 37.0 -0.0 64 88-151 21-84 (131)
161 cd00632 Prefoldin_beta Prefold 75.3 39 0.00084 26.7 13.0 94 113-213 6-102 (105)
162 PF09730 BicD: Microtubule-ass 75.2 1.2E+02 0.0027 32.4 20.0 125 92-221 20-147 (717)
163 smart00502 BBC B-Box C-termina 75.1 38 0.00082 26.5 14.5 58 104-161 5-62 (127)
164 COG4372 Uncharacterized protei 75.0 93 0.002 31.0 20.0 115 102-217 91-208 (499)
165 COG0497 RecN ATPase involved i 75.0 1.1E+02 0.0024 31.8 19.4 162 93-260 144-316 (557)
166 KOG1029 Endocytic adaptor prot 74.8 1.3E+02 0.0029 32.6 16.4 47 98-144 450-496 (1118)
167 PF07888 CALCOCO1: Calcium bin 74.7 1.1E+02 0.0024 31.7 21.9 29 176-204 208-236 (546)
168 TIGR02231 conserved hypothetic 74.7 39 0.00085 34.2 11.6 42 176-217 126-167 (525)
169 PF04111 APG6: Autophagy prote 74.5 82 0.0018 30.1 14.5 17 195-211 113-129 (314)
170 PF06008 Laminin_I: Laminin Do 73.8 73 0.0016 29.2 20.3 108 102-213 90-203 (264)
171 PRK15136 multidrug efflux syst 73.7 93 0.002 30.4 14.5 12 107-118 100-111 (390)
172 KOG2391 Vacuolar sorting prote 73.6 93 0.002 30.3 20.6 115 32-158 169-284 (365)
173 PF05529 Bap31: B-cell recepto 73.4 36 0.00079 29.7 9.7 33 170-202 157-189 (192)
174 PF08614 ATG16: Autophagy prot 73.3 40 0.00086 29.7 9.9 95 108-221 69-163 (194)
175 PRK06975 bifunctional uroporph 73.2 1.3E+02 0.0028 31.8 15.7 39 161-199 372-410 (656)
176 KOG0964 Structural maintenance 73.2 1.3E+02 0.0028 33.5 15.0 12 139-150 305-316 (1200)
177 KOG0933 Structural maintenance 73.1 1.6E+02 0.0035 32.8 19.5 44 174-217 815-858 (1174)
178 PF07926 TPR_MLP1_2: TPR/MLP1/ 73.0 52 0.0011 27.2 15.4 18 200-217 103-120 (132)
179 PF04102 SlyX: SlyX; InterPro 72.9 23 0.0005 26.1 7.1 38 171-208 15-52 (69)
180 PF10883 DUF2681: Protein of u 72.9 25 0.00054 27.5 7.5 49 190-238 25-73 (87)
181 COG2433 Uncharacterized conser 72.4 1.3E+02 0.0027 31.7 14.3 21 129-149 438-458 (652)
182 KOG4403 Cell surface glycoprot 72.2 63 0.0014 32.6 11.7 55 84-139 238-292 (575)
183 PRK00295 hypothetical protein; 72.1 37 0.0008 25.1 7.9 36 172-207 17-52 (68)
184 PF06156 DUF972: Protein of un 71.9 17 0.00037 29.4 6.6 63 102-164 11-81 (107)
185 PRK13169 DNA replication intia 71.8 19 0.00042 29.3 6.9 44 103-146 12-55 (110)
186 PLN02829 Probable galacturonos 71.7 23 0.0005 37.1 9.0 106 101-210 178-283 (639)
187 TIGR02473 flagell_FliJ flagell 70.9 55 0.0012 26.5 20.3 98 108-211 8-105 (141)
188 COG3883 Uncharacterized protei 70.9 94 0.002 29.2 20.3 59 100-158 53-115 (265)
189 PF13094 CENP-Q: CENP-Q, a CEN 70.7 51 0.0011 28.0 9.7 60 100-159 28-94 (160)
190 PRK11281 hypothetical protein; 70.7 1.9E+02 0.0041 32.7 18.8 41 102-142 124-164 (1113)
191 PF15070 GOLGA2L5: Putative go 70.5 1.5E+02 0.0032 31.3 19.0 112 100-216 23-136 (617)
192 PLN02742 Probable galacturonos 70.4 47 0.001 34.2 10.8 104 105-210 73-176 (534)
193 PRK02793 phi X174 lysis protei 69.9 42 0.0009 25.1 7.9 46 168-213 9-54 (72)
194 COG3599 DivIVA Cell division i 69.2 90 0.0019 28.3 16.8 37 241-277 168-204 (212)
195 PF15619 Lebercilin: Ciliary p 69.1 84 0.0018 28.0 14.4 26 180-205 163-188 (194)
196 KOG0978 E3 ubiquitin ligase in 69.0 1.7E+02 0.0036 31.3 17.0 47 103-149 493-539 (698)
197 PRK09841 cryptic autophosphory 68.8 1.6E+02 0.0036 31.2 17.3 22 130-151 270-291 (726)
198 cd07665 BAR_SNX1 The Bin/Amphi 68.8 96 0.0021 28.5 19.8 64 78-145 2-68 (234)
199 TIGR01069 mutS2 MutS2 family p 68.7 1.3E+02 0.0029 32.4 14.3 7 78-84 498-504 (771)
200 PF07888 CALCOCO1: Calcium bin 68.4 1.5E+02 0.0033 30.7 18.6 22 103-124 161-182 (546)
201 PF05701 WEMBL: Weak chloropla 68.0 1.5E+02 0.0032 30.4 20.7 45 174-218 288-332 (522)
202 PRK04406 hypothetical protein; 67.7 48 0.001 25.1 7.9 44 168-211 12-55 (75)
203 TIGR01000 bacteriocin_acc bact 67.7 1.3E+02 0.0029 29.8 15.2 28 124-151 169-196 (457)
204 PRK10869 recombination and rep 67.6 1.5E+02 0.0034 30.4 19.4 78 106-186 157-234 (553)
205 PRK15396 murein lipoprotein; P 67.4 42 0.00091 25.7 7.5 13 218-230 60-72 (78)
206 PRK03947 prefoldin subunit alp 67.2 71 0.0015 26.4 14.7 43 105-147 5-47 (140)
207 PF09789 DUF2353: Uncharacteri 67.1 1.2E+02 0.0026 29.3 12.2 80 181-260 72-152 (319)
208 KOG0612 Rho-associated, coiled 67.0 2.3E+02 0.005 32.2 22.4 9 12-20 353-361 (1317)
209 COG2882 FliJ Flagellar biosynt 67.0 82 0.0018 27.0 16.9 99 111-215 14-112 (148)
210 PRK10476 multidrug resistance 67.0 1.2E+02 0.0025 28.8 15.5 17 107-123 87-103 (346)
211 PRK02119 hypothetical protein; 66.8 52 0.0011 24.7 7.9 44 168-211 10-53 (73)
212 PF06008 Laminin_I: Laminin Do 66.6 1.1E+02 0.0023 28.2 19.8 118 110-227 70-210 (264)
213 TIGR02338 gimC_beta prefoldin, 66.5 65 0.0014 25.7 13.8 100 108-214 5-107 (110)
214 KOG0249 LAR-interacting protei 66.3 1.9E+02 0.0042 31.1 16.8 66 161-228 203-268 (916)
215 PF09304 Cortex-I_coil: Cortex 66.3 70 0.0015 26.0 14.5 51 167-217 37-87 (107)
216 TIGR01069 mutS2 MutS2 family p 66.0 2E+02 0.0043 31.1 15.6 40 104-143 513-552 (771)
217 PF14662 CCDC155: Coiled-coil 65.9 1E+02 0.0022 27.7 17.2 115 88-211 25-139 (193)
218 TIGR00293 prefoldin, archaeal 65.9 70 0.0015 25.8 9.7 31 169-199 88-118 (126)
219 PF06160 EzrA: Septation ring 65.9 1.7E+02 0.0036 30.2 19.2 46 122-167 55-104 (560)
220 PF04849 HAP1_N: HAP1 N-termin 65.8 1.3E+02 0.0028 28.9 17.0 105 102-221 163-267 (306)
221 PRK00736 hypothetical protein; 65.5 53 0.0011 24.3 7.9 36 171-206 16-51 (68)
222 TIGR02971 heterocyst_DevB ABC 65.4 1.2E+02 0.0026 28.3 15.2 16 40-55 21-36 (327)
223 PRK11020 hypothetical protein; 65.4 65 0.0014 26.5 8.6 52 132-183 3-54 (118)
224 PRK04325 hypothetical protein; 65.3 56 0.0012 24.5 7.9 35 172-206 21-55 (74)
225 PF05377 FlaC_arch: Flagella a 65.1 30 0.00066 24.8 5.9 36 170-205 3-38 (55)
226 TIGR03017 EpsF chain length de 65.0 1.4E+02 0.0031 29.1 19.0 18 99-116 142-162 (444)
227 PRK14475 F0F1 ATP synthase sub 64.9 89 0.0019 26.7 14.1 52 99-150 33-85 (167)
228 PRK06569 F0F1 ATP synthase sub 64.8 93 0.002 26.9 14.1 78 110-194 45-123 (155)
229 cd07666 BAR_SNX7 The Bin/Amphi 64.8 1.2E+02 0.0026 28.1 22.3 70 77-146 30-101 (243)
230 KOG0963 Transcription factor/C 64.7 1.6E+02 0.0035 30.9 13.3 28 125-152 240-267 (629)
231 TIGR00634 recN DNA repair prot 64.3 1.8E+02 0.0038 29.9 19.8 80 104-186 159-238 (563)
232 PLN02910 polygalacturonate 4-a 64.3 45 0.00097 35.0 9.3 106 101-210 192-297 (657)
233 PF02050 FliJ: Flagellar FliJ 64.2 63 0.0014 24.7 16.6 88 117-211 2-89 (123)
234 PRK10803 tol-pal system protei 63.6 32 0.0007 31.9 7.6 41 173-213 60-100 (263)
235 KOG0796 Spliceosome subunit [R 63.6 1.5E+02 0.0032 28.7 12.5 75 100-174 84-162 (319)
236 PF05335 DUF745: Protein of un 63.6 1.1E+02 0.0024 27.2 18.3 103 101-215 69-171 (188)
237 cd07655 F-BAR_PACSIN The F-BAR 63.4 1.2E+02 0.0027 27.8 18.0 17 76-92 59-75 (258)
238 PF09486 HrpB7: Bacterial type 63.3 1E+02 0.0022 26.7 18.6 105 105-213 14-118 (158)
239 KOG1003 Actin filament-coating 63.2 1.2E+02 0.0025 27.4 18.9 54 160-213 102-155 (205)
240 KOG1103 Predicted coiled-coil 63.2 1.6E+02 0.0035 29.0 12.8 94 98-206 85-178 (561)
241 PTZ00464 SNF-7-like protein; P 63.0 1.2E+02 0.0026 27.5 15.1 10 224-233 140-149 (211)
242 PF13094 CENP-Q: CENP-Q, a CEN 62.9 75 0.0016 26.9 9.2 55 163-217 23-77 (160)
243 COG1561 Uncharacterized stress 62.9 1.4E+02 0.0031 28.4 17.3 67 177-252 215-288 (290)
244 COG1730 GIM5 Predicted prefold 62.7 52 0.0011 28.1 8.0 51 170-220 90-140 (145)
245 TIGR00998 8a0101 efflux pump m 62.7 1.3E+02 0.0029 28.0 13.3 20 130-149 76-95 (334)
246 PF09325 Vps5: Vps5 C terminal 62.6 1.1E+02 0.0024 27.0 19.7 68 76-147 2-72 (236)
247 PF10146 zf-C4H2: Zinc finger- 62.4 1.3E+02 0.0028 27.6 16.0 84 113-215 11-94 (230)
248 PRK00846 hypothetical protein; 62.2 69 0.0015 24.5 7.9 37 172-208 25-61 (77)
249 PF05622 HOOK: HOOK protein; 62.0 2.6 5.6E-05 44.5 0.0 93 103-195 243-339 (713)
250 PF02403 Seryl_tRNA_N: Seryl-t 62.0 76 0.0016 24.9 9.4 34 124-157 33-66 (108)
251 PF02183 HALZ: Homeobox associ 61.7 39 0.00085 23.0 5.8 33 174-206 5-37 (45)
252 PF06476 DUF1090: Protein of u 61.6 88 0.0019 25.6 9.8 52 158-211 61-112 (115)
253 PRK00409 recombination and DNA 61.5 2.4E+02 0.0052 30.5 16.6 37 100-136 500-536 (782)
254 PF05659 RPW8: Arabidopsis bro 61.4 1E+02 0.0022 26.2 10.1 47 168-214 95-143 (147)
255 KOG4674 Uncharacterized conser 61.0 3.5E+02 0.0076 32.2 20.2 117 108-224 1252-1382(1822)
256 PRK10803 tol-pal system protei 60.8 49 0.0011 30.7 8.3 41 177-217 57-97 (263)
257 KOG1937 Uncharacterized conser 60.7 2E+02 0.0043 29.3 16.1 121 94-220 233-363 (521)
258 cd07595 BAR_RhoGAP_Rich-like T 60.5 1.4E+02 0.003 27.5 12.5 34 78-111 89-123 (244)
259 TIGR01144 ATP_synt_b ATP synth 60.5 96 0.0021 25.6 14.1 11 111-121 31-41 (147)
260 PF12777 MT: Microtubule-bindi 60.4 42 0.0009 32.3 8.0 75 180-259 234-309 (344)
261 TIGR01000 bacteriocin_acc bact 60.4 1.8E+02 0.004 28.8 18.8 15 242-256 292-306 (457)
262 PRK06975 bifunctional uroporph 60.3 2.2E+02 0.0047 30.1 13.8 34 174-207 378-411 (656)
263 PF00038 Filament: Intermediat 60.3 1.5E+02 0.0032 27.6 20.6 27 175-201 224-250 (312)
264 TIGR00998 8a0101 efflux pump m 59.8 1.5E+02 0.0032 27.6 16.4 12 110-121 84-95 (334)
265 PF00769 ERM: Ezrin/radixin/mo 59.6 1.4E+02 0.0031 27.4 15.0 39 173-211 88-126 (246)
266 PF02841 GBP_C: Guanylate-bind 59.6 1.5E+02 0.0033 27.7 20.0 12 99-110 173-184 (297)
267 COG1566 EmrA Multidrug resista 59.4 1.8E+02 0.0039 28.4 13.1 15 139-153 129-143 (352)
268 PF08172 CASP_C: CASP C termin 59.2 1.2E+02 0.0026 28.1 10.5 45 173-217 78-122 (248)
269 PF10498 IFT57: Intra-flagella 59.1 1.8E+02 0.004 28.4 15.0 103 104-214 218-320 (359)
270 COG3206 GumC Uncharacterized p 58.7 2E+02 0.0043 28.6 15.1 113 106-225 285-403 (458)
271 COG0419 SbcC ATPase involved i 58.1 2.8E+02 0.0061 30.2 21.7 89 130-219 318-406 (908)
272 PRK13729 conjugal transfer pil 57.5 56 0.0012 33.2 8.5 44 172-215 81-124 (475)
273 TIGR02449 conserved hypothetic 57.5 76 0.0016 23.5 8.6 48 177-224 3-50 (65)
274 PF10211 Ax_dynein_light: Axon 57.3 1.4E+02 0.003 26.4 14.7 9 17-25 23-31 (189)
275 PF03962 Mnd1: Mnd1 family; I 57.0 1.4E+02 0.003 26.4 13.4 12 81-92 31-42 (188)
276 PF11559 ADIP: Afadin- and alp 57.0 1.2E+02 0.0025 25.4 13.6 37 112-148 58-94 (151)
277 PF00015 MCPsignal: Methyl-acc 56.9 1.3E+02 0.0027 25.8 12.4 35 80-114 74-108 (213)
278 PF10481 CENP-F_N: Cenp-F N-te 56.7 1.8E+02 0.0038 27.7 10.9 101 159-259 10-127 (307)
279 KOG4302 Microtubule-associated 56.4 2.7E+02 0.0059 29.6 14.1 69 90-158 23-92 (660)
280 PRK06231 F0F1 ATP synthase sub 56.4 1.5E+02 0.0032 26.5 14.1 54 99-152 71-125 (205)
281 PRK13461 F0F1 ATP synthase sub 56.2 1.2E+02 0.0027 25.5 14.0 50 102-151 32-81 (159)
282 PF02183 HALZ: Homeobox associ 56.2 60 0.0013 22.1 6.0 38 179-216 3-40 (45)
283 PF15456 Uds1: Up-regulated Du 56.1 1.2E+02 0.0025 25.2 10.0 46 161-207 5-54 (124)
284 PF00430 ATP-synt_B: ATP synth 55.7 58 0.0013 26.1 7.1 106 78-185 20-128 (132)
285 PRK11519 tyrosine kinase; Prov 55.6 2.8E+02 0.0061 29.4 16.4 14 79-92 207-220 (719)
286 PF10186 Atg14: UV radiation r 55.5 1.6E+02 0.0035 26.7 18.8 48 169-216 58-105 (302)
287 TIGR00255 conserved hypothetic 55.2 1.9E+02 0.0041 27.4 14.8 140 102-252 131-289 (291)
288 PRK08476 F0F1 ATP synthase sub 55.1 1.2E+02 0.0027 25.2 15.8 44 78-121 28-74 (141)
289 PF12709 Kinetocho_Slk19: Cent 55.0 83 0.0018 24.6 7.3 36 179-214 47-82 (87)
290 COG4026 Uncharacterized protei 54.9 1.8E+02 0.0039 27.0 10.9 116 160-287 115-236 (290)
291 PF15450 DUF4631: Domain of un 54.8 2.6E+02 0.0056 28.8 17.3 109 91-199 152-290 (531)
292 PRK14473 F0F1 ATP synthase sub 54.8 1.3E+02 0.0029 25.4 14.1 58 99-156 31-89 (164)
293 PF14915 CCDC144C: CCDC144C pr 54.2 2.1E+02 0.0045 27.5 16.4 101 111-215 4-104 (305)
294 PRK11519 tyrosine kinase; Prov 54.1 3E+02 0.0064 29.3 18.0 16 102-117 244-259 (719)
295 PRK00888 ftsB cell division pr 54.0 58 0.0013 26.1 6.6 33 177-209 30-62 (105)
296 PRK10929 putative mechanosensi 54.0 3.7E+02 0.0081 30.4 17.6 22 102-123 68-89 (1109)
297 PF14282 FlxA: FlxA-like prote 53.4 1.1E+02 0.0023 24.5 8.1 14 199-212 55-68 (106)
298 KOG0995 Centromere-associated 53.4 2.9E+02 0.0062 28.9 20.1 144 76-222 161-321 (581)
299 PF07851 TMPIT: TMPIT-like pro 53.2 2E+02 0.0043 27.9 11.2 81 166-256 3-83 (330)
300 PRK14472 F0F1 ATP synthase sub 53.1 1.5E+02 0.0032 25.5 14.2 15 107-121 71-85 (175)
301 COG2900 SlyX Uncharacterized p 53.1 98 0.0021 23.4 8.1 48 171-218 5-52 (72)
302 PF08172 CASP_C: CASP C termin 53.0 79 0.0017 29.3 8.2 99 109-207 2-126 (248)
303 PF14662 CCDC155: Coiled-coil 52.9 1.7E+02 0.0037 26.2 18.6 111 104-218 13-139 (193)
304 PF01576 Myosin_tail_1: Myosin 52.8 4.6 9.9E-05 43.8 0.0 140 78-217 606-765 (859)
305 PRK14471 F0F1 ATP synthase sub 52.7 1.4E+02 0.0031 25.2 14.0 53 99-151 31-84 (164)
306 PF05055 DUF677: Protein of un 52.6 2.3E+02 0.0049 27.5 13.9 80 110-192 240-320 (336)
307 PF15112 DUF4559: Domain of un 52.5 2.2E+02 0.0048 27.3 12.9 128 78-210 164-303 (307)
308 TIGR00414 serS seryl-tRNA synt 52.4 2.5E+02 0.0054 27.9 12.1 19 132-150 42-60 (418)
309 PF06156 DUF972: Protein of un 52.3 1.2E+02 0.0027 24.4 9.4 52 169-220 3-54 (107)
310 TIGR03752 conj_TIGR03752 integ 52.2 2E+02 0.0044 29.3 11.4 29 119-147 58-86 (472)
311 PRK12472 hypothetical protein; 51.9 2.8E+02 0.0061 28.4 15.6 98 113-214 211-309 (508)
312 KOG3091 Nuclear pore complex, 51.2 2.7E+02 0.0059 28.5 12.0 47 171-217 359-405 (508)
313 PRK00888 ftsB cell division pr 51.1 71 0.0015 25.6 6.7 46 107-152 28-73 (105)
314 PRK07352 F0F1 ATP synthase sub 50.9 1.6E+02 0.0035 25.3 18.0 82 68-158 11-95 (174)
315 KOG0980 Actin-binding protein 50.9 3.8E+02 0.0082 29.6 22.0 35 117-151 390-427 (980)
316 PRK06569 F0F1 ATP synthase sub 50.9 1.6E+02 0.0036 25.4 13.1 86 78-166 31-120 (155)
317 PF10234 Cluap1: Clusterin-ass 50.8 2.2E+02 0.0048 26.8 15.6 57 101-158 164-220 (267)
318 TIGR02894 DNA_bind_RsfA transc 50.7 1.4E+02 0.0031 26.0 8.8 44 178-221 108-151 (161)
319 PF15254 CCDC14: Coiled-coil d 50.6 3.6E+02 0.0079 29.3 16.3 35 177-211 490-524 (861)
320 PRK01156 chromosome segregatio 50.6 3.6E+02 0.0077 29.2 20.1 38 173-210 687-724 (895)
321 PRK14127 cell division protein 50.5 50 0.0011 26.9 5.7 33 180-212 36-68 (109)
322 PF08898 DUF1843: Domain of un 50.5 69 0.0015 22.8 5.6 45 151-202 8-52 (53)
323 KOG4196 bZIP transcription fac 50.4 92 0.002 26.2 7.3 30 193-222 86-115 (135)
324 KOG2662 Magnesium transporters 50.3 2.8E+02 0.006 27.8 15.1 127 79-212 178-335 (414)
325 PF07794 DUF1633: Protein of u 50.3 3.1E+02 0.0067 28.4 12.8 59 102-164 600-658 (790)
326 PLN02939 transferase, transfer 49.9 4.1E+02 0.0089 29.7 14.3 76 102-186 267-343 (977)
327 PF12777 MT: Microtubule-bindi 49.8 1.8E+02 0.0039 27.9 10.5 58 166-223 262-319 (344)
328 PF05276 SH3BP5: SH3 domain-bi 49.7 2.1E+02 0.0047 26.4 16.3 102 98-215 115-218 (239)
329 PF06120 Phage_HK97_TLTM: Tail 49.7 2.4E+02 0.0053 27.0 14.1 71 76-146 37-114 (301)
330 PF12329 TMF_DNA_bd: TATA elem 49.4 1.1E+02 0.0024 22.9 9.0 36 176-211 14-49 (74)
331 TIGR02132 phaR_Bmeg polyhydrox 49.3 1.9E+02 0.0042 25.7 18.3 22 97-118 6-27 (189)
332 PF02994 Transposase_22: L1 tr 49.2 74 0.0016 31.1 7.8 41 167-207 144-184 (370)
333 PRK11578 macrolide transporter 49.1 2.5E+02 0.0053 26.9 12.0 13 108-120 101-113 (370)
334 KOG4673 Transcription factor T 48.9 3.7E+02 0.0081 28.9 17.3 64 89-152 492-555 (961)
335 KOG0976 Rho/Rac1-interacting s 48.7 4.1E+02 0.0088 29.3 20.6 23 105-127 290-312 (1265)
336 PF05008 V-SNARE: Vesicle tran 48.5 1.1E+02 0.0023 22.5 9.0 72 79-150 1-77 (79)
337 PF07743 HSCB_C: HSCB C-termin 48.5 1.1E+02 0.0023 22.6 9.0 75 98-179 2-76 (78)
338 PF04728 LPP: Lipoprotein leuc 48.2 1E+02 0.0022 22.2 8.5 27 191-217 6-32 (56)
339 PF15556 Zwint: ZW10 interacto 47.7 2.2E+02 0.0048 25.9 11.6 91 169-259 72-173 (252)
340 PF15397 DUF4618: Domain of un 47.5 2.4E+02 0.0053 26.4 15.7 45 83-127 65-109 (258)
341 cd07619 BAR_Rich2 The Bin/Amph 47.5 2.4E+02 0.0052 26.2 13.4 40 78-117 89-129 (248)
342 COG2900 SlyX Uncharacterized p 47.3 98 0.0021 23.4 6.3 39 170-208 18-56 (72)
343 PF01576 Myosin_tail_1: Myosin 47.1 6.3 0.00014 42.7 0.0 53 166-218 573-625 (859)
344 PRK13428 F0F1 ATP synthase sub 46.3 3.2E+02 0.0069 27.4 16.1 17 105-121 52-68 (445)
345 PF10779 XhlA: Haemolysin XhlA 46.3 1.2E+02 0.0025 22.3 8.1 47 171-217 3-49 (71)
346 PF07106 TBPIP: Tat binding pr 46.1 1.5E+02 0.0033 25.2 8.5 22 199-220 113-134 (169)
347 PF05335 DUF745: Protein of un 45.8 2.2E+02 0.0047 25.3 17.2 60 163-222 105-164 (188)
348 PRK07737 fliD flagellar cappin 45.7 1.7E+02 0.0038 29.7 10.1 53 130-197 444-496 (501)
349 PF13863 DUF4200: Domain of un 45.6 1.6E+02 0.0034 23.6 17.1 104 108-212 9-112 (126)
350 PF13949 ALIX_LYPXL_bnd: ALIX 45.5 2.4E+02 0.0053 25.8 17.1 141 72-220 5-169 (296)
351 PLN02769 Probable galacturonos 45.3 1.6E+02 0.0035 31.1 9.7 110 98-210 173-282 (629)
352 PRK14139 heat shock protein Gr 45.3 1.7E+02 0.0038 25.9 8.8 41 172-212 30-70 (185)
353 COG5185 HEC1 Protein involved 45.1 3.6E+02 0.0079 27.7 12.8 104 169-278 259-366 (622)
354 KOG0288 WD40 repeat protein Ti 45.0 3.4E+02 0.0074 27.3 16.6 19 108-126 15-33 (459)
355 PF09789 DUF2353: Uncharacteri 45.0 3E+02 0.0064 26.6 17.5 141 102-259 68-214 (319)
356 PRK05431 seryl-tRNA synthetase 44.7 2.6E+02 0.0057 27.8 11.0 36 122-157 30-65 (425)
357 PF14282 FlxA: FlxA-like prote 44.6 1.6E+02 0.0035 23.5 8.5 18 201-218 50-67 (106)
358 PRK10929 putative mechanosensi 44.6 5.2E+02 0.011 29.3 16.8 21 189-209 280-300 (1109)
359 PRK13428 F0F1 ATP synthase sub 44.2 3.4E+02 0.0074 27.2 15.0 51 102-152 28-78 (445)
360 PF08946 Osmo_CC: Osmosensory 43.9 55 0.0012 22.6 4.1 32 179-217 10-41 (46)
361 PF10212 TTKRSYEDQ: Predicted 43.9 3.8E+02 0.0083 27.6 14.2 29 179-207 485-513 (518)
362 PRK13453 F0F1 ATP synthase sub 43.6 2.1E+02 0.0046 24.6 14.1 106 78-185 39-147 (173)
363 PF13779 DUF4175: Domain of un 43.6 2.1E+02 0.0046 31.1 10.7 39 140-178 537-575 (820)
364 COG0172 SerS Seryl-tRNA synthe 43.6 2.4E+02 0.0051 28.4 10.3 59 128-187 37-95 (429)
365 KOG4643 Uncharacterized coiled 43.0 5.3E+02 0.012 29.0 17.8 49 101-149 410-458 (1195)
366 PRK14161 heat shock protein Gr 42.9 1.8E+02 0.004 25.5 8.5 39 181-219 19-57 (178)
367 PRK03947 prefoldin subunit alp 42.8 1.9E+02 0.0041 23.8 14.6 41 174-214 94-134 (140)
368 PF09849 DUF2076: Uncharacteri 42.7 67 0.0015 29.8 6.0 46 99-144 25-72 (247)
369 PF05478 Prominin: Prominin; 42.6 4.7E+02 0.01 28.3 18.3 118 97-217 171-289 (806)
370 PF15070 GOLGA2L5: Putative go 42.4 4.3E+02 0.0094 27.8 19.7 26 164-189 157-182 (617)
371 PRK08032 fliD flagellar cappin 42.2 3.5E+02 0.0076 27.1 11.6 48 168-215 407-458 (462)
372 PRK11578 macrolide transporter 42.0 2.8E+02 0.0061 26.5 10.5 16 110-125 96-111 (370)
373 PRK09973 putative outer membra 42.0 1.4E+02 0.0029 23.3 6.6 28 182-209 25-52 (85)
374 PF09755 DUF2046: Uncharacteri 42.0 3.3E+02 0.0071 26.3 17.2 34 169-202 115-149 (310)
375 PF10212 TTKRSYEDQ: Predicted 41.9 4.1E+02 0.0089 27.4 15.8 45 168-215 470-514 (518)
376 PF11047 SopD: Salmonella oute 41.7 13 0.00028 35.2 1.2 17 73-89 31-47 (319)
377 PRK10807 paraquat-inducible pr 41.6 3.3E+02 0.0072 28.1 11.4 46 71-123 407-453 (547)
378 PRK15030 multidrug efflux syst 41.6 1.9E+02 0.0041 28.1 9.4 14 112-125 102-115 (397)
379 COG1345 FliD Flagellar capping 41.5 1.4E+02 0.003 30.5 8.5 77 72-151 395-471 (483)
380 PF06810 Phage_GP20: Phage min 41.5 2.3E+02 0.0049 24.3 10.3 43 106-148 6-48 (155)
381 cd07623 BAR_SNX1_2 The Bin/Amp 41.4 2.6E+02 0.0057 25.0 18.1 122 78-213 78-200 (224)
382 TIGR03825 FliH_bacil flagellar 41.2 2.8E+02 0.0061 25.3 16.3 51 110-160 41-92 (255)
383 PF09730 BicD: Microtubule-ass 41.1 4.9E+02 0.011 28.0 24.5 66 76-141 256-321 (717)
384 CHL00019 atpF ATP synthase CF0 41.0 2.4E+02 0.0052 24.4 14.0 54 99-152 47-101 (184)
385 PRK08032 fliD flagellar cappin 41.0 1.7E+02 0.0037 29.4 9.1 55 128-197 407-461 (462)
386 PF12329 TMF_DNA_bd: TATA elem 40.9 1.5E+02 0.0033 22.1 9.0 40 174-213 19-58 (74)
387 PRK13460 F0F1 ATP synthase sub 40.7 2.3E+02 0.0051 24.2 13.1 116 78-193 37-171 (173)
388 PF10191 COG7: Golgi complex c 40.5 5E+02 0.011 28.0 20.7 13 86-98 12-24 (766)
389 PF15035 Rootletin: Ciliary ro 40.5 2.6E+02 0.0056 24.7 13.1 95 115-213 7-120 (182)
390 KOG4196 bZIP transcription fac 40.4 1.5E+02 0.0032 25.1 7.0 26 95-121 22-47 (135)
391 PRK07353 F0F1 ATP synthase sub 40.2 2E+02 0.0044 23.4 14.1 106 78-185 26-134 (140)
392 PF13815 Dzip-like_N: Iguana/D 40.0 1.4E+02 0.0031 24.1 7.0 36 173-208 79-114 (118)
393 PF07106 TBPIP: Tat binding pr 40.0 1.7E+02 0.0037 24.9 7.9 25 176-200 81-105 (169)
394 PRK05759 F0F1 ATP synthase sub 39.9 2.2E+02 0.0047 23.6 14.0 49 102-150 31-79 (156)
395 PF13514 AAA_27: AAA domain 39.9 5.8E+02 0.013 28.6 23.8 101 83-183 759-870 (1111)
396 PF05010 TACC: Transforming ac 39.7 2.9E+02 0.0062 25.0 21.4 60 172-231 95-156 (207)
397 KOG2264 Exostosin EXT1L [Signa 39.7 1.2E+02 0.0025 31.9 7.5 18 26-43 14-33 (907)
398 PF13747 DUF4164: Domain of un 39.6 1.8E+02 0.0039 22.6 11.9 29 175-203 47-75 (89)
399 PF15466 DUF4635: Domain of un 39.5 44 0.00095 27.7 3.8 40 78-117 84-123 (135)
400 COG0419 SbcC ATPase involved i 39.4 5.4E+02 0.012 28.1 19.4 25 101-125 324-348 (908)
401 PRK05035 electron transport co 39.3 1.6E+02 0.0035 31.4 9.0 48 102-149 425-472 (695)
402 cd07624 BAR_SNX7_30 The Bin/Am 38.9 2.7E+02 0.0059 24.5 18.0 50 98-147 12-62 (200)
403 PF07195 FliD_C: Flagellar hoo 38.8 2E+02 0.0042 26.0 8.4 67 76-145 170-236 (239)
404 PF05377 FlaC_arch: Flagella a 38.7 1.5E+02 0.0032 21.3 6.9 43 176-218 2-44 (55)
405 TIGR02338 gimC_beta prefoldin, 38.6 2E+02 0.0043 22.8 12.1 91 107-197 11-104 (110)
406 TIGR00293 prefoldin, archaeal 38.6 1.1E+02 0.0023 24.7 6.0 37 178-214 3-39 (126)
407 CHL00118 atpG ATP synthase CF0 38.5 2.4E+02 0.0052 23.7 15.9 21 102-122 70-90 (156)
408 PRK15178 Vi polysaccharide exp 38.4 4.3E+02 0.0093 26.6 17.1 43 79-121 183-238 (434)
409 PRK13169 DNA replication intia 38.4 2.2E+02 0.0047 23.2 8.4 52 169-220 3-54 (110)
410 PF06698 DUF1192: Protein of u 38.3 1.3E+02 0.0028 21.9 5.6 25 190-214 23-47 (59)
411 PF04977 DivIC: Septum formati 38.1 1.4E+02 0.003 21.6 6.1 45 175-219 18-62 (80)
412 PRK14143 heat shock protein Gr 38.0 3.3E+02 0.0071 25.1 10.3 38 174-211 67-104 (238)
413 PRK10361 DNA recombination pro 38.0 4.6E+02 0.0099 26.8 19.7 92 110-201 64-160 (475)
414 PF01920 Prefoldin_2: Prefoldi 37.9 1.8E+02 0.0039 22.2 7.1 37 175-211 63-99 (106)
415 PF14346 DUF4398: Domain of un 37.7 1.9E+02 0.0042 22.4 11.0 55 107-170 18-72 (103)
416 PRK15362 pathogenicity island 37.5 1.6E+02 0.0035 29.7 8.0 82 77-158 61-151 (473)
417 PF05278 PEARLI-4: Arabidopsis 37.5 3.6E+02 0.0078 25.4 10.3 62 162-223 181-242 (269)
418 PHA01750 hypothetical protein 37.2 1.2E+02 0.0026 22.6 5.4 33 180-212 41-73 (75)
419 COG5185 HEC1 Protein involved 37.0 4.9E+02 0.011 26.8 22.1 48 172-219 314-361 (622)
420 PRK15136 multidrug efflux syst 36.9 4.1E+02 0.0088 25.9 13.7 19 110-128 96-114 (390)
421 PF08232 Striatin: Striatin fa 36.3 1.4E+02 0.0029 25.0 6.4 50 167-216 25-74 (134)
422 PRK08453 fliD flagellar cappin 36.3 2.1E+02 0.0046 30.5 9.1 69 76-147 598-666 (673)
423 PF05529 Bap31: B-cell recepto 36.2 2.5E+02 0.0054 24.4 8.4 31 126-156 117-147 (192)
424 PF10481 CENP-F_N: Cenp-F N-te 36.1 3.9E+02 0.0084 25.5 15.7 38 106-150 18-55 (307)
425 PF14362 DUF4407: Domain of un 36.1 3.6E+02 0.0078 25.1 16.8 83 102-184 113-206 (301)
426 KOG2751 Beclin-like protein [S 36.0 4.7E+02 0.01 26.4 13.4 66 154-219 202-270 (447)
427 PF15294 Leu_zip: Leucine zipp 35.9 3.9E+02 0.0084 25.4 13.7 98 100-210 126-230 (278)
428 PF07445 priB_priC: Primosomal 35.7 3E+02 0.0064 23.9 12.3 45 103-147 41-90 (173)
429 PF09738 DUF2051: Double stran 35.5 4E+02 0.0088 25.4 13.7 42 105-146 83-124 (302)
430 PRK14474 F0F1 ATP synthase sub 35.4 3.6E+02 0.0077 24.8 14.1 106 78-185 26-134 (250)
431 PRK14154 heat shock protein Gr 35.4 3.4E+02 0.0074 24.6 10.2 32 180-211 58-89 (208)
432 PRK14148 heat shock protein Gr 34.8 3E+02 0.0065 24.6 8.7 33 185-217 44-76 (195)
433 PF13942 Lipoprotein_20: YfhG 34.8 2.7E+02 0.0058 24.7 8.1 44 176-219 118-161 (179)
434 PRK11820 hypothetical protein; 34.7 4E+02 0.0087 25.2 15.8 140 102-252 129-286 (288)
435 KOG1916 Nuclear protein, conta 34.5 7.1E+02 0.015 28.0 15.7 46 93-138 863-908 (1283)
436 TIGR02132 phaR_Bmeg polyhydrox 34.4 3.4E+02 0.0073 24.2 14.7 76 76-151 10-103 (189)
437 PF08946 Osmo_CC: Osmosensory 34.4 95 0.0021 21.4 4.1 15 173-187 18-32 (46)
438 KOG0837 Transcriptional activa 34.4 3.6E+02 0.0078 25.4 9.3 41 166-206 226-266 (279)
439 PF01496 V_ATPase_I: V-type AT 34.3 13 0.00029 39.5 0.0 105 108-216 12-116 (759)
440 PHA02571 a-gt.4 hypothetical p 34.3 2.6E+02 0.0056 22.8 13.5 94 95-193 3-99 (109)
441 PF05615 THOC7: Tho complex su 34.2 2.6E+02 0.0057 22.9 12.4 91 133-223 15-109 (139)
442 PF14942 Muted: Organelle biog 34.2 2.9E+02 0.0064 23.5 16.5 75 78-155 8-94 (145)
443 PF05546 She9_MDM33: She9 / Md 34.0 3.6E+02 0.0078 24.5 15.9 90 100-196 33-128 (207)
444 PF11172 DUF2959: Protein of u 34.0 3.6E+02 0.0077 24.4 16.8 58 93-150 26-87 (201)
445 PF13874 Nup54: Nucleoporin co 33.8 2.8E+02 0.006 23.1 9.3 51 168-218 38-88 (141)
446 PF08657 DASH_Spc34: DASH comp 33.8 3.8E+02 0.0083 25.0 9.6 21 238-258 236-256 (259)
447 PRK15379 pathogenicity island 33.7 24 0.00051 33.3 1.5 18 73-90 31-48 (317)
448 PRK15178 Vi polysaccharide exp 33.5 5.2E+02 0.011 26.1 13.0 108 78-190 220-337 (434)
449 PF05816 TelA: Toxic anion res 33.5 4.3E+02 0.0094 25.2 17.8 13 70-85 73-85 (333)
450 COG4238 Murein lipoprotein [Ce 33.3 1.7E+02 0.0037 22.4 5.7 36 187-222 24-59 (78)
451 PRK13454 F0F1 ATP synthase sub 33.2 3.3E+02 0.007 23.7 17.4 47 111-157 60-106 (181)
452 PRK09841 cryptic autophosphory 33.2 6.2E+02 0.013 26.9 17.3 47 103-149 249-296 (726)
453 PLN02678 seryl-tRNA synthetase 33.2 5.2E+02 0.011 26.1 12.5 23 128-150 41-63 (448)
454 PF12958 DUF3847: Protein of u 32.9 2.4E+02 0.0051 22.0 6.9 32 184-215 4-35 (86)
455 KOG4673 Transcription factor T 32.8 6.7E+02 0.014 27.2 22.5 43 181-223 580-626 (961)
456 PF03962 Mnd1: Mnd1 family; I 32.6 3.5E+02 0.0075 23.8 14.3 27 131-158 73-99 (188)
457 PF06216 RTBV_P46: Rice tungro 32.6 1.6E+02 0.0035 27.7 6.8 19 78-96 30-48 (389)
458 PF04394 DUF536: Protein of un 32.2 1.7E+02 0.0036 20.1 6.4 35 173-207 9-43 (45)
459 PF07200 Mod_r: Modifier of ru 32.2 2.9E+02 0.0063 22.8 11.7 20 241-260 96-115 (150)
460 PF08702 Fib_alpha: Fibrinogen 32.1 3.2E+02 0.0068 23.2 15.3 39 177-215 93-131 (146)
461 PF07889 DUF1664: Protein of u 32.1 3E+02 0.0065 22.9 12.5 95 79-209 30-124 (126)
462 COG1340 Uncharacterized archae 32.0 4.6E+02 0.01 25.1 21.3 144 74-224 108-257 (294)
463 cd07663 BAR_SNX5 The Bin/Amphi 32.0 4E+02 0.0086 24.3 15.7 7 104-110 111-117 (218)
464 COG2919 Septum formation initi 32.0 2E+02 0.0043 23.3 6.6 38 178-215 54-91 (117)
465 KOG3564 GTPase-activating prot 31.9 3.3E+02 0.0072 28.0 9.2 69 154-222 22-90 (604)
466 KOG0243 Kinesin-like protein [ 31.9 7.9E+02 0.017 27.7 15.4 99 105-203 403-512 (1041)
467 COG3206 GumC Uncharacterized p 31.6 5.2E+02 0.011 25.6 15.6 37 109-145 295-331 (458)
468 PF05622 HOOK: HOOK protein; 31.6 16 0.00034 38.7 0.0 55 169-223 241-295 (713)
469 PRK14156 heat shock protein Gr 31.5 3.6E+02 0.0079 23.7 9.1 23 266-289 112-134 (177)
470 KOG4360 Uncharacterized coiled 31.5 6.1E+02 0.013 26.3 15.4 9 73-81 150-158 (596)
471 PRK06798 fliD flagellar cappin 31.5 3.1E+02 0.0067 27.5 9.1 58 125-197 377-434 (440)
472 PRK01203 prefoldin subunit alp 31.3 1.8E+02 0.0039 24.4 6.3 38 238-276 84-121 (130)
473 KOG0243 Kinesin-like protein [ 31.3 8E+02 0.017 27.6 17.1 88 136-223 406-511 (1041)
474 PF10174 Cast: RIM-binding pro 31.3 7.2E+02 0.016 27.1 19.3 47 172-218 376-422 (775)
475 PF06785 UPF0242: Uncharacteri 31.2 5.2E+02 0.011 25.4 19.6 19 241-259 201-219 (401)
476 PRK06568 F0F1 ATP synthase sub 31.1 3.4E+02 0.0074 23.3 14.0 106 78-185 25-133 (154)
477 cd00890 Prefoldin Prefoldin is 31.1 2.3E+02 0.005 22.4 6.9 44 171-214 84-127 (129)
478 PRK15380 pathogenicity island 30.9 27 0.00058 32.8 1.4 15 74-88 32-46 (319)
479 TIGR02971 heterocyst_DevB ABC 30.8 4.4E+02 0.0096 24.5 13.9 111 104-219 88-203 (327)
480 PRK12705 hypothetical protein; 30.7 6.1E+02 0.013 26.1 18.4 142 101-259 36-178 (508)
481 PF09325 Vps5: Vps5 C terminal 30.7 3.7E+02 0.008 23.6 16.7 124 78-215 90-216 (236)
482 cd07651 F-BAR_PombeCdc15_like 30.7 4E+02 0.0086 23.9 17.5 132 80-211 70-205 (236)
483 TIGR03319 YmdA_YtgF conserved 30.7 6.1E+02 0.013 26.0 19.6 138 109-252 21-159 (514)
484 KOG0018 Structural maintenance 30.2 8.5E+02 0.018 27.6 19.1 168 88-255 299-496 (1141)
485 KOG4643 Uncharacterized coiled 30.0 8.5E+02 0.018 27.5 17.7 153 102-254 180-365 (1195)
486 COG4717 Uncharacterized conser 29.9 8E+02 0.017 27.2 12.9 98 110-207 554-653 (984)
487 PRK06664 fliD flagellar hook-a 29.8 3.6E+02 0.0078 28.7 9.6 69 77-149 579-647 (661)
488 KOG0993 Rab5 GTPase effector R 29.8 4.3E+02 0.0094 26.7 9.4 74 138-211 96-171 (542)
489 cd07665 BAR_SNX1 The Bin/Amphi 29.8 4.4E+02 0.0096 24.2 16.8 106 107-215 106-212 (234)
490 PRK14127 cell division protein 29.5 3E+02 0.0064 22.4 7.1 43 169-211 25-67 (109)
491 cd07598 BAR_FAM92 The Bin/Amph 29.3 4.2E+02 0.0092 23.8 19.9 150 98-258 3-152 (211)
492 COG4238 Murein lipoprotein [Ce 28.9 2.7E+02 0.0058 21.3 7.0 45 180-224 24-68 (78)
493 TIGR03185 DNA_S_dndD DNA sulfu 28.8 6.9E+02 0.015 26.1 20.3 145 75-229 180-327 (650)
494 PRK10722 hypothetical protein; 28.8 2.4E+02 0.0052 26.3 7.1 48 169-216 157-204 (247)
495 TIGR03794 NHPM_micro_HlyD NHPM 28.8 5.6E+02 0.012 25.0 16.1 137 80-219 113-251 (421)
496 KOG1937 Uncharacterized conser 28.7 6.5E+02 0.014 25.7 15.1 120 86-212 305-427 (521)
497 PF10828 DUF2570: Protein of u 28.7 3E+02 0.0066 21.9 11.3 77 168-246 26-108 (110)
498 PF09727 CortBP2: Cortactin-bi 28.7 4.3E+02 0.0093 23.7 15.6 103 97-214 79-181 (192)
499 PF04201 TPD52: Tumour protein 28.7 2.1E+02 0.0045 25.0 6.4 39 173-211 28-66 (162)
500 KOG0979 Structural maintenance 28.5 8.8E+02 0.019 27.3 15.6 108 102-214 251-358 (1072)
No 1
>PRK10698 phage shock protein PspA; Provisional
Probab=100.00 E-value=2.3e-45 Score=331.23 Aligned_cols=207 Identities=30% Similarity=0.455 Sum_probs=202.4
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (292)
Q Consensus 76 M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~ 155 (292)
||||+||+++|+|++|+++|++|||++||+|+|+||++++.++++++|++++.++++++++.+++..+.+|+.+|++||.
T Consensus 1 M~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~ 80 (222)
T PRK10698 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR 80 (222)
T ss_pred CCHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022758 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 235 (292)
Q Consensus 156 ~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~ 235 (292)
+|+||||++||.+|..++..+..|+.+++.+...+++|+.++.+|+.+|.+++.++.+|++|+++|+++.++++.+++++
T Consensus 81 ~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~ 160 (222)
T PRK10698 81 KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGK 160 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhccCCCcHHHHHhcccCCCccc
Q 022758 236 TSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKVAFTSFSFSIF 282 (292)
Q Consensus 236 ~~~a~~~feR~eeki~~~EA~AeA~~eL~~~~Le~~fa~Le~~~~i~ 282 (292)
+++++..|+|||+||+++|++++|+..+.+++|+++|++|+.+++|+
T Consensus 161 ~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~~~ve 207 (222)
T PRK10698 161 LDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKADDEIS 207 (222)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhccchHH
Confidence 99999999999999999999999997766678999999999877665
No 2
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=100.00 E-value=1.7e-43 Score=318.41 Aligned_cols=207 Identities=34% Similarity=0.491 Sum_probs=201.9
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (292)
Q Consensus 76 M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~ 155 (292)
||||+||+++|+|++|+++|++|||++||+|+||||+++|.++++++|++++.++++++++++++..+.+|+.+|..||+
T Consensus 1 M~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 1 MGIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred CcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022758 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 235 (292)
Q Consensus 156 ~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~ 235 (292)
+|+||||++||.++..++..+..|+.+++.+...+++|+..+..|+.+|.+++.++.+|++|.+.|+++.+++..+++++
T Consensus 81 ~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~ 160 (219)
T TIGR02977 81 KGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGR 160 (219)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhccCCCcHHHHHhcccCCCccc
Q 022758 236 TSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKVAFTSFSFSIF 282 (292)
Q Consensus 236 ~~~a~~~feR~eeki~~~EA~AeA~~eL~~~~Le~~fa~Le~~~~i~ 282 (292)
.+++...|+|||+||.++|+.++++...++++|+++|++|+.+.+|+
T Consensus 161 ~~~a~~~fer~e~ki~~~ea~aea~~~~~~~~l~~~l~~l~~~~~vd 207 (219)
T TIGR02977 161 SDEAMARFEQYERRVDELEAQAESYDLGRKPSLEDEFAELEADDEIE 207 (219)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHhcCCChHH
Confidence 99999999999999999999999997656788999999999876665
No 3
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-41 Score=304.87 Aligned_cols=207 Identities=45% Similarity=0.598 Sum_probs=202.1
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (292)
Q Consensus 76 M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~ 155 (292)
||||+||+++|++++|+++|+.|||.+||+|+||||+.+|.++++.+|++++.+++++++|+++...+.+|+.+|+.||.
T Consensus 1 M~i~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~ 80 (225)
T COG1842 1 MGIFSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQ 80 (225)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022758 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 235 (292)
Q Consensus 156 ~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~ 235 (292)
+|+|+||+++|.+++.|++.+..++.++.++...+++|+.++..|+.||.+++.++..+++|..+++|+.+|+..+++++
T Consensus 81 ~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s 160 (225)
T COG1842 81 AGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGS 160 (225)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhcc---CCCcHHHHHhcccCCCccc
Q 022758 236 TSSALSAFEKMEEKVLTMESQADSLNQL---TTDDLEGKVAFTSFSFSIF 282 (292)
Q Consensus 236 ~~~a~~~feR~eeki~~~EA~AeA~~eL---~~~~Le~~fa~Le~~~~i~ 282 (292)
++++.+.|+||++||+++|++++++.+| .++|++.+|++++....|+
T Consensus 161 ~~sa~~~fer~e~kiee~ea~a~~~~el~~~~~~dl~~e~a~~~~~~~v~ 210 (225)
T COG1842 161 SSSAMAAFERMEEKIEEREARAEAAAELAEGSGDDLDKEFAQAGAQSAVD 210 (225)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHHhhccCcccHHHHHHHhcccccHH
Confidence 9999999999999999999999999975 5689999999999976654
No 4
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=100.00 E-value=3.6e-41 Score=302.67 Aligned_cols=205 Identities=44% Similarity=0.640 Sum_probs=201.2
Q ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022758 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (292)
Q Consensus 77 ~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (292)
|||+||+++|+|++|+++|++|||++||+|+||||+++|.+++++++.+++.+++++++++++...+.+|+.+|..||.+
T Consensus 1 ~lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~ 80 (221)
T PF04012_consen 1 GLFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAA 80 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 022758 157 GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNT 236 (292)
Q Consensus 157 G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~ 236 (292)
|+||||+.||.++..+++++..|+.+++.+..++++|+..+.+++.+|.++++++..|++|.++|+++.+++.++++++.
T Consensus 81 g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~ 160 (221)
T PF04012_consen 81 GREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSV 160 (221)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHhhccC--CCcHHHHHhcccCCCcc
Q 022758 237 SSALSAFEKMEEKVLTMESQADSLNQLT--TDDLEGKVAFTSFSFSI 281 (292)
Q Consensus 237 ~~a~~~feR~eeki~~~EA~AeA~~eL~--~~~Le~~fa~Le~~~~i 281 (292)
+++...|+||+++|..++++++++.++. .++++.+|++++.+..+
T Consensus 161 ~~a~~~~er~e~ki~~~ea~a~a~~el~~~~~~~e~~l~~~~~~~~~ 207 (221)
T PF04012_consen 161 SSAMDSFERMEEKIEEMEARAEASAELADSDQDLEAELEELERDSSV 207 (221)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCcc
Confidence 9999999999999999999999999987 35799999999998877
No 5
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=98.56 E-value=1.1e-05 Score=71.67 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLE 201 (292)
Q Consensus 122 lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le 201 (292)
+.........|+++...++..+++....|+..+..|+-+-|..+|.+|+.|+.++..+..++.+++.++..+
T Consensus 29 Il~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~i-------- 100 (191)
T PTZ00446 29 ILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINL-------- 100 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 333334455566677777777777778888999999999999999999999999999999988877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhc-----cCCCcHHHHHhccc
Q 022758 202 SKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQ-----LTTDDLEGKVAFTS 276 (292)
Q Consensus 202 ~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~a~~~feR~eeki~~~EA~AeA~~e-----L~~~~Le~~fa~Le 276 (292)
+.++....++.+-...+++.++++. .++.+++.+.++.|++.++..+.-.++++. ++.++|+++|.+|+
T Consensus 101 ---E~a~~~~ev~~aLk~g~~aLK~~~k---~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le 174 (191)
T PTZ00446 101 ---ENMHLHKIAVNALSYAANTHKKLNN---EINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLK 174 (191)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 6667788888888888888888875 456677888888898888888877787753 23468999999998
Q ss_pred CCC
Q 022758 277 FSF 279 (292)
Q Consensus 277 ~~~ 279 (292)
..+
T Consensus 175 ~e~ 177 (191)
T PTZ00446 175 EQT 177 (191)
T ss_pred HHH
Confidence 743
No 6
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=98.28 E-value=1.6e-05 Score=67.95 Aligned_cols=157 Identities=24% Similarity=0.316 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 121 ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL 200 (292)
Q Consensus 121 alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~L 200 (292)
++..+.....+|+++...++..+.+...+|+.+++.|+.+.|+-.|.+++.++..+..+...+.. +..+
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~-----------l~~~ 70 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSN-----------LESV 70 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Confidence 34556667888999999999999999999999999999999999999999888877776655544 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhc-------cCCCcHHHHHh
Q 022758 201 ESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQ-------LTTDDLEGKVA 273 (292)
Q Consensus 201 e~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~a~~~feR~eeki~~~EA~AeA~~e-------L~~~~Le~~fa 273 (292)
..+|+.+......+.+-..+..+-++++. +++.++....++.+++.++.++.--+++.. ...++|++.|.
T Consensus 71 ~~~ie~a~~~~~v~~al~~~~~~Lk~~~~---~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~ 147 (171)
T PF03357_consen 71 LLQIETAQSNQQVVKALKQSSKALKKINK---QINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELE 147 (171)
T ss_dssp HHHHHHHHHHHHHSSS----SHHHHHHHH---STTSCCHHHHHHHHHHHHHHHTS----------------TTSTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHH
Confidence 44556677777777777777777766654 445566667777777777666544444432 23468999999
Q ss_pred cccCCCcccc--cccCcCCC
Q 022758 274 FTSFSFSIFA--FKFLPSVE 291 (292)
Q Consensus 274 ~Le~~~~i~~--~~~~~~~~ 291 (292)
++..+...+. -.-||+|.
T Consensus 148 ~l~~e~~~~~~~~~~lp~~P 167 (171)
T PF03357_consen 148 QLEDEIEEEEEEKQQLPSVP 167 (171)
T ss_dssp HHHHCCCTTS--SS-SS---
T ss_pred HHHHHHhhhhhccccCCcCC
Confidence 9999888777 77788764
No 7
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00014 Score=64.57 Aligned_cols=108 Identities=18% Similarity=0.276 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 022758 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTS 237 (292)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~ 237 (292)
+--.|..||.||+.|++++..+...+...+.+...| +.+..--++|.+--..|+|.+.++. +++.+
T Consensus 59 NKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~al-----------EnA~~n~Evl~~m~~~A~AmK~~h~---~mDiD 124 (221)
T KOG1656|consen 59 NKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREAL-----------ENANTNTEVLDAMGSAAKAMKAAHK---NMDID 124 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------HcccccHHHHHHHHHHHHHHHHHHh---ccChh
Confidence 556899999999999999999888888777776666 4556666778888888888877764 56778
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHhh-------ccCCCcHHHHHhcccCCC
Q 022758 238 SALSAFEKMEEKVLTMESQADSLN-------QLTTDDLEGKVAFTSFSF 279 (292)
Q Consensus 238 ~a~~~feR~eeki~~~EA~AeA~~-------eL~~~~Le~~fa~Le~~~ 279 (292)
.+.+.++.|.+.++-.+--.+|+. .++.|+|...|.+|++..
T Consensus 125 kVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqee 173 (221)
T KOG1656|consen 125 KVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEE 173 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHH
Confidence 889999999999999998888874 345578999999998754
No 8
>PTZ00464 SNF-7-like protein; Provisional
Probab=97.85 E-value=0.0019 Score=58.31 Aligned_cols=107 Identities=14% Similarity=0.221 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 022758 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSS 238 (292)
Q Consensus 159 EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~ 238 (292)
-.-|..+|.+|+.|+.++..+..++.+++..+..+ +.++....++.+-...+++.+.++.. ++.++
T Consensus 60 K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~i-----------e~a~~~~~vv~amk~g~kaLK~~~k~---i~id~ 125 (211)
T PTZ00464 60 KQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTT-----------ESVKDTKVQVDAMKQAAKTLKKQFKK---LNVDK 125 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhc---CCHHH
Confidence 45788899999999998888888877666555544 66677788888888888888888754 46677
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhc-------cCCCcHHHHHhcccCCC
Q 022758 239 ALSAFEKMEEKVLTMESQADSLNQ-------LTTDDLEGKVAFTSFSF 279 (292)
Q Consensus 239 a~~~feR~eeki~~~EA~AeA~~e-------L~~~~Le~~fa~Le~~~ 279 (292)
+...++.|++.++..+.-.+++.. ++.++|+++|.+|+.+.
T Consensus 126 Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~ 173 (211)
T PTZ00464 126 VEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDM 173 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 778888888888888877777643 24468999999999864
No 9
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0021 Score=63.03 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (292)
Q Consensus 115 l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk 194 (292)
+.+.-.+++.++.....|.++++.+++++++..++++.|++.|.-.+|..-|.+++..++.++..-..+.+
T Consensus 228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~--------- 298 (439)
T KOG2911|consen 228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNN--------- 298 (439)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHH---------
Confidence 34455677788888888999999999999999999999999999999999999999999888777666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhc-------cCCCc
Q 022758 195 SNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQ-------LTTDD 267 (292)
Q Consensus 195 ~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~a~~~feR~eeki~~~EA~AeA~~e-------L~~~~ 267 (292)
+..+-+.|...++-+..+.|-.....|-+.+... +.+++.+-+.++.+++-+++.+.--+++.. +.+++
T Consensus 299 --l~~vl~~Id~s~~nkvvl~AyksGs~alK~il~~--~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~ 374 (439)
T KOG2911|consen 299 --LETVLSQIDNSQTNKVVLQAYKSGSEALKAILAQ--GGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDED 374 (439)
T ss_pred --HHHHHHHHHhhcccHHHHHHHHHhHHHHHHHHhc--cCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHH
Confidence 4445556677788888888777777777666544 444566888999999988888877777643 23468
Q ss_pred HHHHHhcccCCCcc
Q 022758 268 LEGKVAFTSFSFSI 281 (292)
Q Consensus 268 Le~~fa~Le~~~~i 281 (292)
||.+|.+|+.+..=
T Consensus 375 lEkEL~~L~~D~~k 388 (439)
T KOG2911|consen 375 LEKELEDLEADEKK 388 (439)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999887643
No 10
>PRK10698 phage shock protein PspA; Provisional
Probab=97.21 E-value=0.052 Score=49.35 Aligned_cols=165 Identities=11% Similarity=0.097 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE-----DWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~-----~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 178 (292)
++..+.+++..+..+-..--..-.....++........++. -.++=|+.||..- ..+......|+.++..
T Consensus 36 m~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K-----~~~~~~~~~l~~~~~~ 110 (222)
T PRK10698 36 MEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEK-----QKLTDLIATLEHEVTL 110 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 33334444444444433333333333333333333333332 3456677776543 3456777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----cHHHHHHHHHHHHHhHH
Q 022758 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTS----SALSAFEKMEEKVLTME 254 (292)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~----~a~~~feR~eeki~~~E 254 (292)
...+++++...+.+|+..+.+++.|...+..+.....++.+..++... +.+.+.. ..-..++++|.+.+...
T Consensus 111 ~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~----~~~~~a~~~f~rmE~ki~~~Ea~aea~~ 186 (222)
T PRK10698 111 VDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDS----GKLDEAMARFESFERRIDQMEAEAESHG 186 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcchHHHHHHHHHHHHHHHHHHHhHhh
Confidence 999999999999999999999999999999999999999887766543 2333332 23455667777665432
Q ss_pred HH-----HHHhhccC-CCcHHHHHhcccC
Q 022758 255 SQ-----ADSLNQLT-TDDLEGKVAFTSF 277 (292)
Q Consensus 255 A~-----AeA~~eL~-~~~Le~~fa~Le~ 277 (292)
.- -.-+..|. ++.+|++|+.|..
T Consensus 187 ~~~~~~l~~e~~~le~~~~ve~ELa~LK~ 215 (222)
T PRK10698 187 FGKQKSLDQQFAELKADDEISEQLAALKA 215 (222)
T ss_pred ccCCCCHHHHHHHhhccchHHHHHHHHHH
Confidence 11 01122333 3469999988764
No 11
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=96.94 E-value=0.12 Score=46.57 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 147 YRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (292)
Q Consensus 147 e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 221 (292)
++-|+.||. --.........|+.++..+..+++++...+..|+..+..++.+-..+..+.....++....
T Consensus 84 EdLAr~Al~-----~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~ 153 (219)
T TIGR02977 84 EDLARAALI-----EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVR 153 (219)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554 2233344445566666666666666666666666666666666666666666655554443
No 12
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=96.86 E-value=0.22 Score=44.28 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 124 QVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (292)
Q Consensus 124 ~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk 194 (292)
.+..++..+.+-..+++..+..-...|+..++.|+.|-|+.+|.+|..++..+..-..++...+..+..++
T Consensus 20 ~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiE 90 (209)
T KOG2910|consen 20 SLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIE 90 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555566677888999999999999999999888888777777776666666553
No 13
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=96.78 E-value=0.37 Score=43.16 Aligned_cols=145 Identities=14% Similarity=0.161 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Q 022758 79 FDRLARVVKSYANAILSSFE---DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED-----WYRKA 150 (292)
Q Consensus 79 f~Rl~~lira~~n~~ld~~E---DPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~-----~e~rA 150 (292)
|+=|+--+...++.+-|... --..-++..|.+++..+..+...--........++..+......+.. .++-|
T Consensus 7 ~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLA 86 (221)
T PF04012_consen 7 KTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLA 86 (221)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 33344444555555544432 23455667777777777777777666666666666666666655544 45666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 151 QLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVS 228 (292)
Q Consensus 151 ~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~ 228 (292)
+.||..-. .+-.....++.++..+..+++.+...+.+|+..+.+++.+...+..+....+++.....+...++
T Consensus 87 r~al~~k~-----~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~ 159 (221)
T PF04012_consen 87 REALQRKA-----DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFS 159 (221)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 67665432 34455567889999999999999999999999999999999999999999999988877755444
No 14
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=96.46 E-value=0.45 Score=43.47 Aligned_cols=60 Identities=10% Similarity=0.155 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLG 232 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~ 232 (292)
-.....|+.++...+.++..+...+.+|+..+..++.|...++++....++......+..
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~ 150 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQE 150 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677777777777777777777777777777777777666666554444433
No 15
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.43 E-value=0.36 Score=46.19 Aligned_cols=139 Identities=18% Similarity=0.214 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (292)
|+..+..|+.+...+...+..+-...-.+..+++.+..++..+...+.. +...--.+...+...+..+...+
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--------~~~~D~~eL~~lr~eL~~~~~~i 225 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--------IESCDQEELEALRQELAEQKEEI 225 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhhcCHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444443333 22222233344455666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHH
Q 022758 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQA 257 (292)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~a~~~feR~eeki~~~EA~A 257 (292)
+..+..+..++..+..++.+|++...++..+.+....++-.. +...++ ....+.+++.++..++...
T Consensus 226 ~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~---~~~r~~----t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 226 EAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR---EECRGW----TRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCC----CHHHHHHHHHHHHHHHHHH
Confidence 666666667777777777777777777777766655443322 122333 2456777887777777543
No 16
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.32 E-value=1.5 Score=48.21 Aligned_cols=146 Identities=19% Similarity=0.281 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (292)
+++.++++...+..++-.+-...+..+++...++.+...+...+..+. ..-.+ ..+....+++++.++.++
T Consensus 804 ~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~---k~~~d------~~~l~~~~~~ie~l~kE~ 874 (1293)
T KOG0996|consen 804 LEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVL---KKVVD------KKRLKELEEQIEELKKEV 874 (1293)
T ss_pred HHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hccCc------HHHHHHHHHHHHHHHHHH
Confidence 445555555555555555666666666666666666666666665511 11111 122334455666666666
Q ss_pred HHHH------HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 022758 184 DQQK------NVVNNLVSNTRLL--------ESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEK 249 (292)
Q Consensus 184 ~~~~------~~v~~Lk~~l~~L--------e~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~a~~~feR~eek 249 (292)
++++ +++..|...+..+ +++++....+++.+.+..+...+..+. ++.+...+...+.+++..
T Consensus 875 e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~----s~~~i~k~q~~l~~le~~ 950 (1293)
T KOG0996|consen 875 EELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKT----SDRNIAKAQKKLSELERE 950 (1293)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhc----CcccHHHHHHHHHHHHHH
Confidence 6663 3333344333332 455555555665555444433333221 222233455677777777
Q ss_pred HHhHHHHHHHhhc
Q 022758 250 VLTMESQADSLNQ 262 (292)
Q Consensus 250 i~~~EA~AeA~~e 262 (292)
+..++.+.+.+.+
T Consensus 951 ~~~~e~e~~~L~e 963 (1293)
T KOG0996|consen 951 IEDTEKELDDLTE 963 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766543
No 17
>PRK09039 hypothetical protein; Validated
Probab=95.98 E-value=1.1 Score=43.43 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 223 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkA 223 (292)
+..|.++++.++.++..|...|..++.+..+.+.+++.|..+.+.|.+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~ 186 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALA 186 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555443
No 18
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.92 E-value=3.2 Score=47.51 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA-REALKRRKSYADNANAL 179 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLA-reAL~rk~~~e~~~~~l 179 (292)
..+|+.. -.......+++..+..+-..-.+++..++++...+.+++.++..|.+.-...-- .....++..+...+..+
T Consensus 282 R~liEEA-ag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeEL 360 (1486)
T PRK04863 282 RVHLEEA-LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEEL 360 (1486)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677766 456678888888888888888888888888888888888888877665332111 12234444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
...++.....+..++..+..++.++..++.+...+
T Consensus 361 ee~Lee~eeeLeeleeeleeleeEleelEeeLeeL 395 (1486)
T PRK04863 361 EERLEEQNEVVEEADEQQEENEARAEAAEEEVDEL 395 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444444444444444333333
No 19
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.84 E-value=3.4 Score=44.59 Aligned_cols=126 Identities=16% Similarity=0.249 Sum_probs=62.7
Q ss_pred cccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 022758 73 NTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS---EDWYRK 149 (292)
Q Consensus 73 ~~~M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~---~~~e~r 149 (292)
.+.|++=..+.++-.--=..-+.+.||..++.+ +..|.=++.+...=-.++|..+-.|++++.+.+.+. .+|.++
T Consensus 224 kte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~E--lekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~ 301 (1243)
T KOG0971|consen 224 KTEEELRAQVRDLTEKLETLRLKRAEDKAKLKE--LEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKER 301 (1243)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455664444444433222223445678776655 334444444444444455666666666666554433 334333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 150 AQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLE 201 (292)
Q Consensus 150 A~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le 201 (292)
-..-+..--| --.-+-..|.-.|++++.|+..++.+++.++.|...+.-|+
T Consensus 302 ~k~emad~ad-~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 302 YKEEMADTAD-AIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111100 11122334555666777777777777777777766665443
No 20
>PRK09039 hypothetical protein; Validated
Probab=95.73 E-value=0.99 Score=43.63 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
...+..+++.|+.|+..++..++.++......+.+|++++.+++...
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444
No 21
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.55 E-value=1.5 Score=41.97 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
.+..+++.+..+...+...+..+.+++.+++..+.+.+.+.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444333
No 22
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.36 E-value=5.1 Score=43.38 Aligned_cols=117 Identities=15% Similarity=0.239 Sum_probs=89.1
Q ss_pred CCCcccccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 68 GGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (292)
Q Consensus 68 ~~~~~~~~M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e 147 (292)
|||.-+.--+=|++|-. -...+.+.+=++-|--.--.|-+..+.+.+.+-+..+-.+...+.+|.++++.++..+.++.
T Consensus 359 G~~~~~~ss~qfkqlEq-qN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 359 GSDGQAASSYQFKQLEQ-QNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK 437 (1243)
T ss_pred CCCCcccchHHHHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443444556777653 34455555556666555556667778888899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 148 RKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (292)
Q Consensus 148 ~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~ 187 (292)
++...|| |-|+.......++..+|+.+..|+..+.+++
T Consensus 438 EQVDAAl--GAE~MV~qLtdknlnlEekVklLeetv~dlE 475 (1243)
T KOG0971|consen 438 EQVDAAL--GAEEMVEQLTDKNLNLEEKVKLLEETVGDLE 475 (1243)
T ss_pred HHHHHhh--cHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 9999998 5677777777888888888887777766554
No 23
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.23 E-value=2.3 Score=47.99 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (292)
Q Consensus 165 AL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~ 219 (292)
.+..+..++.++..+...++++...+..++..+.-+..++..+..+++.++.+.+
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKE 933 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 7778999999999999999999999999999999999999999999988886643
No 24
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=2.5 Score=37.90 Aligned_cols=111 Identities=14% Similarity=0.254 Sum_probs=61.0
Q ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 022758 93 ILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSY 172 (292)
Q Consensus 93 ~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~ 172 (292)
++.+.-.|..+|.+.-|.++.....+.+.....-.++|.+- ...+.--+.|+++-.+--....-
T Consensus 3 lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklv--------------aeIKk~AK~gq~~A~KimAkdLv-- 66 (224)
T KOG3230|consen 3 LFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLV--------------AEIKKTAKQGQMDAVKIMAKDLV-- 66 (224)
T ss_pred cccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHcccHHHHHHHHHHHH--
Confidence 34455689999998888888777775555444333333322 22333345788765554322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 235 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~ 235 (292)
....++ .++.-++.+|+-.--+..+|++....+++.+-+...+.+++
T Consensus 67 ------------RtR~~i----~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MN 113 (224)
T KOG3230|consen 67 ------------RTRRYI----KKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMN 113 (224)
T ss_pred ------------HHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 222221 12233445555555666666666666666666666666555
No 25
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.94 E-value=7.3 Score=43.72 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~E 159 (292)
..-++..+......+..++..+.......++.+.++..+......|..+...++..-.+
T Consensus 623 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 681 (1201)
T PF12128_consen 623 QEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKE 681 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666677778888888888888888888888888888888888888877765444
No 26
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.91 E-value=8 Score=43.24 Aligned_cols=11 Identities=18% Similarity=0.293 Sum_probs=5.3
Q ss_pred CcHHHHHhccc
Q 022758 266 DDLEGKVAFTS 276 (292)
Q Consensus 266 ~~Le~~fa~Le 276 (292)
.+++.++.++.
T Consensus 887 ~~l~~~l~~~~ 897 (1163)
T COG1196 887 EELEEELRELE 897 (1163)
T ss_pred HHHHHHHHHHH
Confidence 34555555443
No 27
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.86 E-value=4.4 Score=39.91 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (292)
.+.+++..++++.++.++.+.++++......+..+++.+..+-.+++.++..
T Consensus 118 ~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qs 169 (499)
T COG4372 118 REAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQS 169 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666666666666666655555555543
No 28
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.60 E-value=3.5 Score=45.67 Aligned_cols=38 Identities=8% Similarity=-0.011 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ 141 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~ 141 (292)
+...+++++....+++.++-.+-+.....++.+...+.
T Consensus 1568 V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~ 1605 (1758)
T KOG0994|consen 1568 VVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQE 1605 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444433333
No 29
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.58 E-value=3.5 Score=37.54 Aligned_cols=11 Identities=9% Similarity=0.256 Sum_probs=6.2
Q ss_pred CcHHHHHhccc
Q 022758 266 DDLEGKVAFTS 276 (292)
Q Consensus 266 ~~Le~~fa~Le 276 (292)
..||.-|.+|+
T Consensus 225 ~eld~~l~el~ 235 (237)
T PF00261_consen 225 EELDQTLNELN 235 (237)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHHhh
Confidence 35666666554
No 30
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.52 E-value=5.2 Score=44.67 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=7.5
Q ss_pred HHHHHHHhHHHHHHHh
Q 022758 245 KMEEKVLTMESQADSL 260 (292)
Q Consensus 245 R~eeki~~~EA~AeA~ 260 (292)
.++.++..++.+.+.+
T Consensus 946 ~~~~~i~~le~~i~~l 961 (1163)
T COG1196 946 ELEREIERLEEEIEAL 961 (1163)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4444555555444433
No 31
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.45 E-value=2.7 Score=35.64 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (292)
Q Consensus 99 DPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A 153 (292)
|+...++.-+.++++...+....|...-..-..++.+++.++..+......+...
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4445577777788888888888887777777777777777777777666655543
No 32
>PRK02224 chromosome segregation protein; Provisional
Probab=94.41 E-value=8.6 Score=41.25 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022758 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (292)
Q Consensus 115 l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (292)
+......+.........++.++..++..+.+|.+.+..+...
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~ 566 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEE 566 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444555555566666666677777777655554433
No 33
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.25 E-value=8.5 Score=40.96 Aligned_cols=147 Identities=12% Similarity=0.205 Sum_probs=86.2
Q ss_pred chHHHHHHHHHHHHHH-----HhcccCCH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 77 NLFDRLARVVKSYANA-----ILSSFEDP-----EKILEQAVLEMNDDL-VKMRQATAQVLASQKRLENKCKAAEQASED 145 (292)
Q Consensus 77 ~if~Rl~~lira~~n~-----~ld~~EDP-----e~mLeQ~Iremee~l-~kar~alA~v~A~~k~le~kl~~~~~~~~~ 145 (292)
++-..+..++....+- ..++...| -.+|-+++.-+.+++ .+...+-..+...-+.++.+++....++.+
T Consensus 504 sF~~~Ik~lL~r~~~qPill~s~~k~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~ 583 (717)
T PF10168_consen 504 SFEKHIKSLLQRSSSQPILLKSSDKSSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQE 583 (717)
T ss_pred hHHHHHHHHhcCCCCCCeecCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555567777665331 13444443 377777777777763 444444444444455555555555555555
Q ss_pred HHHHHHHHHHcCCHHHH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 146 WYRKAQLALQKGEEDLA---REALKRRKSYADNANALKAQLDQ----QKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 146 ~e~rA~~AL~~G~EdLA---reAL~rk~~~e~~~~~l~~ql~~----~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
.++. +..|+.-.+.|| ..+..+...+.++++.+-..+.. ......+++..++.++.++..++...+.++.+.
T Consensus 584 l~e~-~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 584 LQEE-RKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 333444444455 33444555555555555555543 444567777888888888888888888888877
Q ss_pred HHHHHH
Q 022758 219 QSAKTA 224 (292)
Q Consensus 219 ~~AkAq 224 (292)
+..+.+
T Consensus 663 ~~Q~~~ 668 (717)
T PF10168_consen 663 DYQQRQ 668 (717)
T ss_pred HHHHHH
Confidence 665443
No 34
>PRK11637 AmiB activator; Provisional
Probab=94.10 E-value=6.6 Score=38.77 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~ 144 (292)
++..|.+.+..|......+..+-..-..++.+++.++.++.
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433
No 35
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.98 E-value=11 Score=41.05 Aligned_cols=6 Identities=0% Similarity=0.351 Sum_probs=2.3
Q ss_pred Cccccc
Q 022758 62 SHCYRQ 67 (292)
Q Consensus 62 ~~~~~~ 67 (292)
+.++.+
T Consensus 646 G~~~~~ 651 (1164)
T TIGR02169 646 GELFEK 651 (1164)
T ss_pred ceeEcC
Confidence 333433
No 36
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=5.1 Score=35.92 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022758 161 LAREALKRRKSYADNANALKAQ 182 (292)
Q Consensus 161 LAreAL~rk~~~e~~~~~l~~q 182 (292)
-|-..|.+|+.||.+...|.+|
T Consensus 64 rAlrVLkQKK~yE~q~d~L~~Q 85 (218)
T KOG1655|consen 64 RALRVLKQKKMYENQKDSLDQQ 85 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3556677777777776666655
No 37
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.60 E-value=5.6 Score=36.24 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~ 180 (292)
.+.|+.-....++.+..+...+..+........++|++....+.-.+.....|-. -+-.+-.+...++..+..+.
T Consensus 80 ~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEe-----R~e~~E~ki~eLE~el~~~~ 154 (237)
T PF00261_consen 80 RKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEE-----RAEAAESKIKELEEELKSVG 154 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhchhHHHHHHHHHHHH
Confidence 3444444444444444444444444444445555555544444444444333322 22334445556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHH-
Q 022758 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATK-VSEMLGNVNTSSALSAFEKMEEKVLTMESQAD- 258 (292)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~-i~~~~~~~~~~~a~~~feR~eeki~~~EA~Ae- 258 (292)
..+..++....+.......++.+|..+..++...-.|+..|..... +... .+..-..|...+.+........+
T Consensus 155 ~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~-----id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 155 NNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKE-----IDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666677777777777666666666654321 1111 12334556666666666665553
Q ss_pred Hhhcc
Q 022758 259 SLNQL 263 (292)
Q Consensus 259 A~~eL 263 (292)
++.+|
T Consensus 230 ~l~el 234 (237)
T PF00261_consen 230 TLNEL 234 (237)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 34444
No 38
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.51 E-value=7.3 Score=37.28 Aligned_cols=138 Identities=17% Similarity=0.223 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (292)
|+..+..|+.+...+...+..+-.-.-.+..+++.+..++..+.+.... +..-+.+....+ .+.+.....++
T Consensus 149 L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e-~~~~d~~eL~~l-------k~~l~~~~~ei 220 (312)
T smart00787 149 LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE-LEDCDPTELDRA-------KEKLKKLLQEI 220 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHhCCHHHHHHH-------HHHHHHHHHHH
Confidence 3444444444444444444444444444444444455444444333333 222222233332 34555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHH
Q 022758 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQ 256 (292)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~a~~~feR~eeki~~~EA~ 256 (292)
......+..++.++..++.+|++...++..+....+.|+.. .+...+++ ...+.++++++...+..
T Consensus 221 ~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~---~~~~r~~t----~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK---LEQCRGFT----FKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCC----HHHHHHHHHHHHHHHHH
Confidence 66666666666677777777777777777766665555442 22223443 45667777777766644
No 39
>PRK02224 chromosome segregation protein; Provisional
Probab=93.40 E-value=13 Score=39.87 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 114 DLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (292)
Q Consensus 114 ~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~ 146 (292)
.+..++..+..+-.....++.++..+..++..+
T Consensus 207 ~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l 239 (880)
T PRK02224 207 RLNGLESELAELDEEIERYEEQREQARETRDEA 239 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443333333
No 40
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.34 E-value=5.6 Score=35.48 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 81 RLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (292)
Q Consensus 81 Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~ 151 (292)
|+-.-+...-...|+++||++.-|-|.|.-+.+++.-++..+-......+.+++++.+...++.+..+...
T Consensus 36 k~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~ 106 (194)
T PF15619_consen 36 KTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELK 106 (194)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666789999999999999999999999999999999999999999999999998887666655
No 41
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.31 E-value=7.7 Score=43.15 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=10.9
Q ss_pred HHHHHHHHhcccCCHHHHHH
Q 022758 86 VKSYANAILSSFEDPEKILE 105 (292)
Q Consensus 86 ira~~n~~ld~~EDPe~mLe 105 (292)
+.+.|++.+.++-|=+.||.
T Consensus 1516 L~~~I~e~v~sL~nVd~IL~ 1535 (1758)
T KOG0994|consen 1516 LTGEIQERVASLPNVDAILS 1535 (1758)
T ss_pred HHHHHHHHHHhcccHHHHHH
Confidence 34555666666666444444
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.01 E-value=5.9 Score=39.66 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 022758 100 PEKILEQAVLEMND-DLVKMRQATAQ--------------VLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLARE 164 (292)
Q Consensus 100 Pe~mLeQ~Iremee-~l~kar~alA~--------------v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAre 164 (292)
-.+..++.+-+|++ +|...++-.-. +.+.++-+++++.+.+..+.+|.++-..
T Consensus 333 qr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~------------ 400 (493)
T KOG0804|consen 333 QRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE------------ 400 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 34555555555555 44444444444 4444444455555555555554443321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (292)
Q Consensus 165 AL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~ 219 (292)
.+..-..-+..+..-...++...+.++..+...+.+|.+++.++..|+.-..
T Consensus 401 ---~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 401 ---EREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred ---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 1111122222333334445555556666666667777777777766665543
No 43
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.91 E-value=2.9 Score=37.72 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGN 233 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~ 233 (292)
...++..+++....+.+|+....+|+.+++.++.+.+.+.+.....+-...+...+.|
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~G 177 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYG 177 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444555555566666666666666666666666666666555556555544
No 44
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.88 E-value=6.9 Score=40.24 Aligned_cols=97 Identities=16% Similarity=0.264 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 113 DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA--LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (292)
Q Consensus 113 e~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A--L~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v 190 (292)
.++..++..|..+-.....++.++..+..++.++..+-..+ ...|...-.+..+.+..+++..+..++.-+..++..+
T Consensus 92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~ 171 (546)
T KOG0977|consen 92 AELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL 171 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34455555555555555556666666666666555555555 3444444445455555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022758 191 NNLVSNTRLLESKIQEARS 209 (292)
Q Consensus 191 ~~Lk~~l~~Le~Ki~e~k~ 209 (292)
..|+.....|...|..++.
T Consensus 172 ~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHhhhhHHHHHHHHH
Confidence 5555555555444444443
No 45
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.81 E-value=11 Score=40.38 Aligned_cols=123 Identities=17% Similarity=0.238 Sum_probs=72.3
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022758 90 ANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR 169 (292)
Q Consensus 90 ~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk 169 (292)
++.+|+..+.-..-|+-.|++++++|..++..+....+...++...+............+ -|-++.=|.++
T Consensus 229 lq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k---------~d~~~~eL~rk 299 (775)
T PF10174_consen 229 LQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSK---------MDRLKLELSRK 299 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHH
Confidence 344444444455666777777777777777766666666666655555554444333322 22222222222
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 K----SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (292)
Q Consensus 170 ~----~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 221 (292)
. .+......+..+...+...++.|+..+...+.....+....+.|..+...+
T Consensus 300 ~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k 355 (775)
T PF10174_consen 300 KSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEK 355 (775)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2 344555556666666677777777777777777777777777777665443
No 46
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.81 E-value=24 Score=41.57 Aligned_cols=50 Identities=12% Similarity=0.229 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A 153 (292)
++..|.++++.+...+..++.....++.++..+.++...+...++++.-+
T Consensus 962 ~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l 1011 (1930)
T KOG0161|consen 962 AENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSL 1011 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555443
No 47
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.77 E-value=8.5 Score=35.99 Aligned_cols=105 Identities=17% Similarity=0.270 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 022758 85 VVKSYANAILSSFEDP----EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED 160 (292)
Q Consensus 85 lira~~n~~ld~~EDP----e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~Ed 160 (292)
.+...++.+-++...+ ..+++..|+++...|..+... .-+++-+++.+...+.++..+....
T Consensus 29 ~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~e-------ka~l~~e~~~l~~e~~~~r~k~e~e------- 94 (312)
T PF00038_consen 29 RLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKE-------KARLELEIDNLKEELEDLRRKYEEE------- 94 (312)
T ss_dssp HHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred hhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHH-------hhHHhhhhhhHHHHHHHHHHHHHHH-------
Confidence 3445555555553222 345555555555555555544 4445555555555555555554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (292)
Q Consensus 161 LAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k 208 (292)
......++..+..+...++.....-..|...+..|+..|.-++
T Consensus 95 -----~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 95 -----LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 5556666777777777777766666666666666666555443
No 48
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.64 E-value=15 Score=39.07 Aligned_cols=53 Identities=8% Similarity=0.270 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 022758 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQK-------RLENKCKAAEQASEDWYRK 149 (292)
Q Consensus 97 ~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k-------~le~kl~~~~~~~~~~e~r 149 (292)
..+.+..+...|.+++.+...++.-+..+...+. .+|+++.+.+..-...|.+
T Consensus 451 l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQ 510 (697)
T PF09726_consen 451 LTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQ 510 (697)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666665555554443 4555555544444444443
No 49
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.60 E-value=6.3 Score=45.22 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----cCCHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA---LQ----KGEEDLAREALKRRKSYAD 174 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A---L~----~G~EdLAreAL~rk~~~e~ 174 (292)
.-|++.|..+++...+++..+-+.-......+..+..+......+.+.-..+ |+ ..++++...|-.++..+.+
T Consensus 988 ~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~ 1067 (1486)
T PRK04863 988 EKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHA 1067 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHH
Confidence 3455555555555555555555555544444444444444444333333322 11 1233333334344344444
Q ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 175 NA-------NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 175 ~~-------~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
.+ ..|++++...+..++.|+..+..++.++.+++.....++.++
T Consensus 1068 ~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W 1118 (1486)
T PRK04863 1068 RLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGW 1118 (1486)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 445555555555555555555555555555555555555553
No 50
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.31 E-value=5.4 Score=40.76 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQAT-AQVLASQKRLENKCKAAEQASEDWYR 148 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~al-A~v~A~~k~le~kl~~~~~~~~~~e~ 148 (292)
+.++++...++++...+++... ..+...+..+++++++.+.++..+++
T Consensus 35 e~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~ 83 (514)
T TIGR03319 35 KRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLER 83 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444443 33333333344444444444444433
No 51
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.24 E-value=21 Score=39.36 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
...++.++.|+.+++.++.++..|+..+..+..++.+.+-++..+
T Consensus 397 ~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i 441 (1074)
T KOG0250|consen 397 EERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI 441 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334445555555555555555555555555555555544444444
No 52
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=92.24 E-value=1.7 Score=44.00 Aligned_cols=99 Identities=12% Similarity=0.156 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQ 186 (292)
Q Consensus 107 ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~ 186 (292)
.|++++++|.+++..++.+.+....++.+++-++.....+......++..+..+++ ...+....+..++..+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 143 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLK--------EWFQAFDFNGSEIERL 143 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHH--------HHHHHHHHHHHHHHHH
Confidence 55566666666666666666655555555544433322111111111111122232 2233334444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 187 KNVVNNLVSNTRLLESKIQEARSKKDT 213 (292)
Q Consensus 187 ~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 213 (292)
......+...+++++.+|++++.++..
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 144 LTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555555555544443
No 53
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.98 E-value=12 Score=35.85 Aligned_cols=20 Identities=5% Similarity=0.069 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022758 128 SQKRLENKCKAAEQASEDWY 147 (292)
Q Consensus 128 ~~k~le~kl~~~~~~~~~~e 147 (292)
-+..|...++.++..-..+.
T Consensus 145 Lk~~L~~~~~~l~~D~~~L~ 164 (312)
T smart00787 145 LKEGLDENLEGLKEDYKLLM 164 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.87 E-value=24 Score=39.05 Aligned_cols=118 Identities=17% Similarity=0.201 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCC-HHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA-QLALQKGE-EDLAREALKRRKSYADNANA 178 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA-~~AL~~G~-EdLAreAL~rk~~~e~~~~~ 178 (292)
..-+....++.+..|.+.+.-+-++.....++++++.....++.++..-| ..++.-+- +||+++ +...++.++.
T Consensus 677 ~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~e----i~~~~~eIe~ 752 (1074)
T KOG0250|consen 677 ILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLARE----IKKKEKEIEE 752 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHH----HHHHHHHHHH
Confidence 34566666777777777777777777777777777777777777766641 11111111 455554 4555666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (292)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~Ak 222 (292)
+++.+++++..++.+.....+++..+...+.+......+...++
T Consensus 753 ~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~ 796 (1074)
T KOG0250|consen 753 KEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALK 796 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 77777777777777777777776666666666655555544443
No 55
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.86 E-value=6.4 Score=39.39 Aligned_cols=67 Identities=7% Similarity=0.196 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCC
Q 022758 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR--AQSAKTATKVSEMLGNVN 235 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr--~~~AkAq~~i~~~~~~~~ 235 (292)
...+...+...++++...++.-..|..++.-...|+.+++.+....... ......+++++..+--++
T Consensus 384 ~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 384 LQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 3445666777777777777777777777777777777776666554433 233455666666665443
No 56
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.58 E-value=19 Score=37.44 Aligned_cols=104 Identities=19% Similarity=0.243 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQ 186 (292)
Q Consensus 107 ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~ 186 (292)
.++++...+.+....++.....+-.+.+-.+...+.-...+..++.++.-=.+.+.+....+...+.+.-..+..++..+
T Consensus 122 e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~l 201 (629)
T KOG0963|consen 122 ENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEEL 201 (629)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888888888888888888888877777778888888877776666666665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 187 KNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 187 ~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
+..+..| ...+.....++..++..
T Consensus 202 e~ki~~l-------q~a~~~t~~el~~~~s~ 225 (629)
T KOG0963|consen 202 EKKISSL-------QSAIEDTQNELFDLKSK 225 (629)
T ss_pred HHHHHHH-------HHHHHhhhhHHHHHHHh
Confidence 5444444 44445555555554444
No 57
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.49 E-value=19 Score=37.14 Aligned_cols=52 Identities=12% Similarity=0.152 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (292)
Q Consensus 99 DPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA 150 (292)
+...-+...|..+-+.+.+-..+--.+.-....+...+..+......+....
T Consensus 282 ~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei 333 (569)
T PRK04778 282 EKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEI 333 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555554444444333
No 58
>PRK12704 phosphodiesterase; Provisional
Probab=90.85 E-value=21 Score=36.56 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 100 PEKILEQAVLEMNDDLVKMRQAT-AQVLASQKRLENKCKAAEQASEDWYR 148 (292)
Q Consensus 100 Pe~mLeQ~Iremee~l~kar~al-A~v~A~~k~le~kl~~~~~~~~~~e~ 148 (292)
...++++...++++...+++... ..+...+..+++++++.+.++...++
T Consensus 40 Ae~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~ 89 (520)
T PRK12704 40 AKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEK 89 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666655555544443 33333334444444444444444433
No 59
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.76 E-value=21 Score=39.20 Aligned_cols=142 Identities=18% Similarity=0.267 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR--EALKRRKSYADNANALKAQLDQQK 187 (292)
Q Consensus 110 emee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAr--eAL~rk~~~e~~~~~l~~ql~~~~ 187 (292)
|++.+.....+.+..-...-.+|++.++.+...++.+.++-.. .+.-++=. .=......+.....++....+.+.
T Consensus 185 ~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~---~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k 261 (1072)
T KOG0979|consen 185 DLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERK---KSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAK 261 (1072)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccccchHhhhHHHHHHHHHHHHHH
Confidence 4444444444444444444555555555555555554443221 12222211 112233456677788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHH
Q 022758 188 NVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQAD 258 (292)
Q Consensus 188 ~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~a~~~feR~eeki~~~EA~Ae 258 (292)
..+..+......++.++.+++.++..+..+...... -++++.... -..++.|.++++++.+.....+
T Consensus 262 ~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~--~~~e~~~k~--~~~~ek~~~~~~~v~~~~~~le 328 (1072)
T KOG0979|consen 262 KELRKLEKEIKPIEDKKEELESEKKETRSKISQKQR--ELNEALAKV--QEKFEKLKEIEDEVEEKKNKLE 328 (1072)
T ss_pred HHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888877777666543322 122222211 1234455555555555444433
No 60
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.45 E-value=29 Score=37.60 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 221 (292)
+++.+...-..+.+.++++..+..|..+-.++.+|.+...-+..++
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~ 457 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESA 457 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555544444433
No 61
>PRK11637 AmiB activator; Provisional
Probab=90.44 E-value=19 Score=35.49 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (292)
Q Consensus 103 mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~ 142 (292)
-+++.|.+.+.+|......+...-..-..++.+++..+..
T Consensus 86 ~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 86 QASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433333
No 62
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.19 E-value=18 Score=34.73 Aligned_cols=11 Identities=27% Similarity=0.135 Sum_probs=5.1
Q ss_pred Cccceeeeecc
Q 022758 44 GGVGALKVTRL 54 (292)
Q Consensus 44 ~~~~~~~~~~~ 54 (292)
|-+..+.|..-
T Consensus 52 G~v~~i~V~eG 62 (423)
T TIGR01843 52 GIVREILVREG 62 (423)
T ss_pred cEEEEEEeCCC
Confidence 33555555433
No 63
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.16 E-value=28 Score=36.96 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=31.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (292)
Q Consensus 96 ~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A 153 (292)
++|.-.+-|.-.|+.+...-.++|..+......+..+...+..++.+.+.++.+..-.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444445555555555556666666666666666666655443
No 64
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.71 E-value=8 Score=37.42 Aligned_cols=91 Identities=16% Similarity=0.134 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRL 199 (292)
Q Consensus 120 ~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~ 199 (292)
..++..--...+++.+++++..++.+-++.+. .|-|++.+.........++|+....++..-+++=...+.+
T Consensus 134 ~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq--------~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~ 205 (401)
T PF06785_consen 134 GLIRHLREENQCLQLQLDALQQECGEKEEESQ--------TLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGK 205 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHH--------HHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHH
Confidence 33334444444444444444444444444443 3556666666666677778888888889999998899999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022758 200 LESKIQEARSKKDTLKARA 218 (292)
Q Consensus 200 Le~Ki~e~k~k~~~LkAr~ 218 (292)
|++|++++.-+...|..-.
T Consensus 206 LEsKVqDLm~EirnLLQle 224 (401)
T PF06785_consen 206 LESKVQDLMYEIRNLLQLE 224 (401)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999888877665443
No 65
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.65 E-value=11 Score=31.26 Aligned_cols=92 Identities=14% Similarity=0.234 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (292)
|.-.||..+-++..++..++++.+.+..+..++-.+-...+.+.. ....+..++.++
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~-----------------------~~~~~~~L~~el 77 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA-----------------------LKKEVEELEQEL 77 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
Confidence 345566777778888888887777777777766666555555421 122333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
...+...+.+-.-+.+-..++++++.....||.-+
T Consensus 78 ~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 78 EELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444455555555444443
No 66
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.64 E-value=24 Score=35.29 Aligned_cols=117 Identities=15% Similarity=0.226 Sum_probs=59.2
Q ss_pred CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHH
Q 022758 99 DPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE---DLAREALKRRKSY 172 (292)
Q Consensus 99 DPe---~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~E---dLAreAL~rk~~~ 172 (292)
||+ .+++-.+...-+.....++.-+. ....-++.++.+++.++.+-+.+...-..++.. +--.....+...+
T Consensus 132 dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~--~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l 209 (498)
T TIGR03007 132 DPELAKDVVQTLLTIFVEETLGSKRQDSD--SAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEA 209 (498)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccchhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHH
Confidence 784 55555444444433332222111 123344444555555555444444433222210 1112344566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTR---------------LLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~---------------~Le~Ki~e~k~k~~~LkAr 217 (292)
..++...+.++...+...+.++..+. .+..++.+++.++..+..+
T Consensus 210 ~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~ 269 (498)
T TIGR03007 210 QEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLR 269 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776665433 4556666666666666543
No 67
>PF13166 AAA_13: AAA domain
Probab=89.53 E-value=27 Score=36.43 Aligned_cols=62 Identities=13% Similarity=0.297 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ-SAKTATKVSEMLGNV 234 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~-~AkAq~~i~~~~~~~ 234 (292)
...+..+...+...+..+..+...+..++..+...+.+...|.+... ...+...+|..+..+
T Consensus 409 ~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 409 KEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444455555555555566666666666666666666666665544 455555666655544
No 68
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.49 E-value=21 Score=37.78 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Q 022758 106 QAVLEMNDDLVKMRQATAQVLASQ-------KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (292)
Q Consensus 106 Q~Iremee~l~kar~alA~v~A~~-------k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 178 (292)
..|.+++.++.+++..++...... ..++.++++++.++..--.+....+. .-...+..+...++.+++.
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~----~~~~~a~~~~~~L~~~l~~ 363 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLL----MQADAAQARESQLVSDVNQ 363 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 677888888888887777666543 33444444444444333222222211 1111222223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTAT 225 (292)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~ 225 (292)
+++++.+.. .....+..|+...+-.+.-.+.|..|.+.++.+.
T Consensus 364 ~~~~~~~~~----~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 364 LKAASAQAG----EQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHhCc----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333332221 2244556666666666666777777766665554
No 69
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.44 E-value=43 Score=38.03 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
+..+++..+..+..+...+..++.+|.+....+..+.
T Consensus 982 ~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~ 1018 (1311)
T TIGR00606 982 VNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQ 1018 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433
No 70
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.43 E-value=10 Score=40.31 Aligned_cols=77 Identities=13% Similarity=0.253 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHH-HHH---HhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 77 NLFDRLARVVKSY-ANA---ILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (292)
Q Consensus 77 ~if~Rl~~lira~-~n~---~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (292)
.+|.+-..+|+.. +.. +-+.++--...|...+.+--+.|.+++.....+-...+.|..+++++...-+.+.+|+..
T Consensus 539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666543 222 111222233444444444445555555555555556666666666666666666666554
Q ss_pred H
Q 022758 153 A 153 (292)
Q Consensus 153 A 153 (292)
-
T Consensus 619 v 619 (717)
T PF10168_consen 619 V 619 (717)
T ss_pred H
Confidence 3
No 71
>PRK03918 chromosome segregation protein; Provisional
Probab=88.98 E-value=36 Score=36.45 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHHHHHHh
Q 022758 77 NLFDRLARVVKSYANAIL 94 (292)
Q Consensus 77 ~if~Rl~~lira~~n~~l 94 (292)
++|....-+-.|.+..++
T Consensus 124 ~~f~~~~~~~Qg~~~~~~ 141 (880)
T PRK03918 124 HVFLNAIYIRQGEIDAIL 141 (880)
T ss_pred HHhceeEEEeccchHHHh
Confidence 455444445566666665
No 72
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=88.37 E-value=7.2 Score=39.34 Aligned_cols=52 Identities=12% Similarity=0.233 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 022758 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (292)
Q Consensus 107 ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (292)
.||.+-.++.++|..+..++.+-+.+..+-+++++.-.....+...||+..+
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~ 111 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSET 111 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 4567777788888888888889999999999999999999999999988755
No 73
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.36 E-value=49 Score=37.28 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (292)
+-....|.+....+.+++..+........++..+...++.++..+.+..+..+..
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1201)
T PF12128_consen 631 KQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEE 685 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555555444444444444444333
No 74
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.04 E-value=32 Score=34.73 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHh
Q 022758 240 LSAFEKMEEKVLTMESQADSL 260 (292)
Q Consensus 240 ~~~feR~eeki~~~EA~AeA~ 260 (292)
...+..+++.+...+.+.+.+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l 318 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKL 318 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665555555443
No 75
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.89 E-value=38 Score=35.39 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (292)
Q Consensus 105 eQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~ 145 (292)
.+.+.++++.|.+++..+..+-..-+.+...+.++..+...
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~ 367 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEE 367 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666666555555544443
No 76
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.88 E-value=20 Score=38.54 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
+.++..|....++.+-.++....+|.-.++.+.-|+..|-
T Consensus 418 ~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 418 RQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLS 457 (1118)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444444443333
No 77
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=87.61 E-value=18 Score=31.37 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (292)
..+.+..+..+|.+++..++.++.....++.+...++....+... -...-.|+--+.|-.+..+++-.+..++..-
T Consensus 25 ~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~----~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E 100 (159)
T PF05384_consen 25 ARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSR----NFDRYSEEDIKEAYEEAHELQVRLAMLRERE 100 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888888999999999999888888887777666655433 2455556666666554444444333333333
Q ss_pred H
Q 022758 184 D 184 (292)
Q Consensus 184 ~ 184 (292)
.
T Consensus 101 ~ 101 (159)
T PF05384_consen 101 K 101 (159)
T ss_pred H
Confidence 3
No 78
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=87.45 E-value=13 Score=29.45 Aligned_cols=95 Identities=20% Similarity=0.317 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022758 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (292)
.|..+..+|.+.+......+ .+|+.+=+..-..+.++...++.+-..-..++.++..+
T Consensus 4 ~f~~~~~~v~~el~~t~~d~----~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l------------------ 61 (99)
T PF10046_consen 4 MFSKVSKYVESELEATNEDY----NLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEEL------------------ 61 (99)
T ss_pred HHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 56777777777766554432 34554444444444455444444444444444333332
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (292)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e 206 (292)
..|-+++..++.++..++..+..|..-..+||.|+..
T Consensus 62 ------------~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 62 ------------QPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345566677777888888888888888888887754
No 79
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=87.14 E-value=32 Score=33.74 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Q 022758 80 DRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA-----L 154 (292)
Q Consensus 80 ~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A-----L 154 (292)
.-|..++..-.+++-....--...|.+-|.++++...++.-.+..++..-..+++.+..++..+.+-+.-.+.| .
T Consensus 225 ~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~ 304 (384)
T PF03148_consen 225 EDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLEN 304 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 33344444444444444444456677777777777777777777777777777777777777777766654444 2
Q ss_pred HcCC------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 155 QKGE------EDLAREAL-KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (292)
Q Consensus 155 ~~G~------EdLAreAL-~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e 206 (292)
...+ -|-|...| .+...+.+.+..|...+...+.....|......|+..|..
T Consensus 305 R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~ 363 (384)
T PF03148_consen 305 RTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAV 363 (384)
T ss_pred HhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 24555555 5777777777778888877777777777777777766544
No 80
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.08 E-value=35 Score=34.19 Aligned_cols=130 Identities=18% Similarity=0.230 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----H---HHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE----E---DLAREALKRRKSYADNA 176 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~----E---dLAreAL~rk~~~e~~~ 176 (292)
|+..+.+++++-.-+.....+.+...-+|..+|-.++.+..+-+-+|..+|..-. | -++|++-..+..++-.+
T Consensus 227 lerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~ 306 (502)
T KOG0982|consen 227 LERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRD 306 (502)
T ss_pred HHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444332222234455555666666666666666666667766664322 2 35577777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC
Q 022758 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ-SAKTATKVSEMLGN 233 (292)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~-~AkAq~~i~~~~~~ 233 (292)
..++.........+..|+....+|....+.+...++.+.-|.- -.+-...++..+..
T Consensus 307 qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr 364 (502)
T KOG0982|consen 307 QQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR 364 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888877777777777777766643 23444455544443
No 81
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.97 E-value=25 Score=32.45 Aligned_cols=129 Identities=15% Similarity=0.169 Sum_probs=59.1
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCHHHHHHH
Q 022758 89 YANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA---QLALQKGEEDLAREA 165 (292)
Q Consensus 89 ~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA---~~AL~~G~EdLAreA 165 (292)
.+..-+++++--..=...++..++..+..++..+...--....++.++...+..+.+..++- +..+..+-++-...+
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~a 93 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRA 93 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444444442222334444455555555555555555555555555555555554444432 223333332222222
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 166 L-KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 166 L-~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
| .+.....++...+..++..+...+..+...+..+..++..++.....+..+
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~ 146 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEAR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 233334444555555555555555555555555555544444444444443
No 82
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.71 E-value=26 Score=32.29 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH---HHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL---KRRKSYADNANA 178 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL---~rk~~~e~~~~~ 178 (292)
.-|+.-+..++++..+++..+-........|+.+...++.....++.++..|..... .|...+. ..+..++..+..
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~-rL~~~~~~~~eEk~~Le~e~~e 86 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQ-RLEEEAEMQEEEKEQLEQELRE 86 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 457778889999999999999999999999999999999999998888876643322 2333222 122233444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (292)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~ 209 (292)
++..+..+......-......++.++..++.
T Consensus 87 ~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 87 AEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444333
No 83
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=86.57 E-value=42 Score=34.58 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE----------------------------DWYRKAQLA 153 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~----------------------------~~e~rA~~A 153 (292)
.-+++.|.++++++......+.........-...+.++...-. ..-.+-...
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~l 183 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEEL 183 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666555544444444333322 233333445
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 022758 154 LQKGEEDLAREALKRRKS 171 (292)
Q Consensus 154 L~~G~EdLAreAL~rk~~ 171 (292)
...||-.-|++.|.....
T Consensus 184 t~~GD~~~A~eil~~l~~ 201 (560)
T PF06160_consen 184 TENGDYLEAREILEKLKE 201 (560)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666777777777665443
No 84
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.45 E-value=35 Score=33.48 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 196 NTRLLESKIQEARSKKDTLKARAQSAKTA 224 (292)
Q Consensus 196 ~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq 224 (292)
.+..|+..++-.+.-.+.|..|.+.++..
T Consensus 343 ~~~~L~r~~~~~~~~y~~ll~r~~e~~l~ 371 (444)
T TIGR03017 343 EMSVLQRDVENAQRAYDAAMQRYTQTRIE 371 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556666665555443
No 85
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=85.96 E-value=33 Score=32.86 Aligned_cols=127 Identities=19% Similarity=0.117 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhccc----------CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 81 RLARVVKSYANAILSSF----------EDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (292)
Q Consensus 81 Rl~~lira~~n~~ld~~----------EDPe---~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e 147 (292)
.+.+.++.++.--.+.- .||+ .+++-.+..++.-+...+... ......-++.++.+++.++.+.+
T Consensus 113 ~~~~~~~~~v~v~~~~~s~ii~I~~~~~dP~~A~~ian~l~~~~~~~i~~~~~~~--~~~a~~fl~~ql~~~~~~l~~ae 190 (362)
T TIGR01010 113 AFYRYYKKRLSVDVDSVSGILTLNVTAFDAEEAQKINQRLLKEGERLINRLNERA--RKDTIAFAENEVKEAEQRLNATK 190 (362)
T ss_pred HHHHHHHhceEEeecCCCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444441 3884 667766665655555533222 22334455666666666666555
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 022758 148 RKAQLALQK-GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS-------NTRLLESKIQEARSKKDT 213 (292)
Q Consensus 148 ~rA~~AL~~-G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~-------~l~~Le~Ki~e~k~k~~~ 213 (292)
.+...--.+ |--|.-..+ ......+..++.++.+.+.++..+.. .+..++.++..++.++..
T Consensus 191 ~~l~~fr~~~~~~d~~~~~----~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 191 AELLKYQIKNKVFDPKAQS----SAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDE 260 (362)
T ss_pred HHHHHHHHhCCCcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHH
Confidence 554433222 222221111 11233444445555544444444432 333444444444444433
No 86
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=85.83 E-value=40 Score=33.58 Aligned_cols=128 Identities=25% Similarity=0.274 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022758 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (292)
|=.-+..+++--.|++--.+..-+..+.--|+++++...+..-.++..+-.-...+..+..++..+.+-+.-.+.|...=
T Consensus 250 LR~~l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRl 329 (421)
T KOG2685|consen 250 LREALDQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRL 329 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHH
Confidence 44556666677777777777777888999999999999999999999998888888888888888888887777775433
Q ss_pred C-----------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 158 E-----------EDLAREAL-KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (292)
Q Consensus 158 ~-----------EdLAreAL-~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~ 205 (292)
+ -|.|...| .+...+...+..|+..+++++.....|......|+..|.
T Consensus 330 e~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~ 389 (421)
T KOG2685|consen 330 ENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIA 389 (421)
T ss_pred HHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 25565443 345556666666666666666666666666666665554
No 87
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.42 E-value=21 Score=30.15 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=63.0
Q ss_pred HHHHHHHHhcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 022758 86 VKSYANAILSSFED---PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA 162 (292)
Q Consensus 86 ira~~n~~ld~~ED---Pe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLA 162 (292)
++.....+.++++. -.+-+++...+.+.+|..+..-+..+-..-..++.++..+...+..-+.....+=
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-------- 76 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-------- 76 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH--------
Confidence 34444445555443 3466666666666666666666666666666666666666666666555443321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 163 reAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
..-.++..+++.+......+......+.........++.++..+..+++.+-.+
T Consensus 77 -~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k 130 (143)
T PF12718_consen 77 -QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEK 130 (143)
T ss_pred -HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHH
Confidence 222333344444444444444444444444444444444444444444443333
No 88
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=85.04 E-value=37 Score=32.56 Aligned_cols=18 Identities=11% Similarity=-0.032 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022758 131 RLENKCKAAEQASEDWYR 148 (292)
Q Consensus 131 ~le~kl~~~~~~~~~~e~ 148 (292)
.++.+++.++.++..++.
T Consensus 148 ~l~~~i~~~~~~i~~~~~ 165 (423)
T TIGR01843 148 LILAQIKQLEAELAGLQA 165 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 89
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=84.80 E-value=63 Score=35.05 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 022758 204 IQEARSKKDTLKA 216 (292)
Q Consensus 204 i~e~k~k~~~LkA 216 (292)
++++..+.+.+.+
T Consensus 419 L~~a~ekld~mgt 431 (1265)
T KOG0976|consen 419 LQEALEKLDLMGT 431 (1265)
T ss_pred HHHHHHHHHHHhH
Confidence 4444444444433
No 90
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=84.51 E-value=96 Score=36.88 Aligned_cols=106 Identities=16% Similarity=0.268 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~ 180 (292)
.+-+...|+.++..+..=.++-..+++.++.++.++.+++...+.-..... .++.....+..++..++
T Consensus 1578 rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~------------d~~K~lkk~q~~~k~lq 1645 (1930)
T KOG0161|consen 1578 RKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANE------------DAQKQLKKLQAQLKELQ 1645 (1930)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhH------------HHHHHHHhhHHHHHHHH
Confidence 455555566666666655555666666666555555555544443332222 34455566777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
.+++.....-+.+..++...+.+++-++.+...|+...
T Consensus 1646 ~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l 1683 (1930)
T KOG0161|consen 1646 RELEDAQRAREELLEQLAEAERRLAALQAELEELREKL 1683 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78887777777777777777777777777777777553
No 91
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=84.47 E-value=4.4 Score=40.90 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 223 (292)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkA 223 (292)
..+..+.+|+++++..+..++.+......+++||++++.+...|+.+..++.+
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34456677778888887777777788888888888888888888888755444
No 92
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=84.47 E-value=22 Score=29.44 Aligned_cols=99 Identities=19% Similarity=0.272 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR---KAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (292)
Q Consensus 107 ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~---rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (292)
.+.+.-.++.++...+..++..+..++.++.+...-..+++. .+.-...-|+ .|.+. +...-...|+...
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~------llvk~-~k~~~~~eL~er~ 79 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGN------LLVKV-SKEEAVDELEERK 79 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhh------HHhhh-hHHHHHHHHHHHH
Confidence 455566677888889999999999999999987766555543 3333344444 22222 4455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 184 DQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (292)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 212 (292)
+.++-.+..|+.+...++.++++++.++.
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555443
No 93
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=84.25 E-value=13 Score=34.49 Aligned_cols=83 Identities=10% Similarity=0.195 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022758 100 PEKILEQAVLEMNDDLVKMRQATAQVLAS-----QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (292)
Q Consensus 100 Pe~mLeQ~Iremee~l~kar~alA~v~A~-----~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 174 (292)
-...|+.+|+|++..|.+++.-|+..-.. ......++..+..+|.+.-.+|+.+=..|+-|-|...+.+...+..
T Consensus 84 ~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ 163 (254)
T PF03194_consen 84 FLRYLQRLIRDCDRRIERAKERLEQTQEEQAKEADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKE 163 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35788999999999999998887763322 1112678999999999999999999999999999888776665555
Q ss_pred HHHHHHHH
Q 022758 175 NANALKAQ 182 (292)
Q Consensus 175 ~~~~l~~q 182 (292)
....++.+
T Consensus 164 ek~~le~~ 171 (254)
T PF03194_consen 164 EKEELEKE 171 (254)
T ss_pred HHHHHHhh
Confidence 55555553
No 94
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=84.09 E-value=23 Score=29.47 Aligned_cols=95 Identities=13% Similarity=0.145 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (292)
Q Consensus 111 mee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v 190 (292)
.+.....+...++.+.......+.++..+.....++..+.......|-. +.....+..-+..|...+.++...+
T Consensus 14 ~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~------~~~l~~~~~fl~~L~~~i~~q~~~v 87 (146)
T PRK07720 14 KENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLS------IQEIRHYQQFVTNLERTIDHYQLLV 87 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777788888888888888999888888888888776666643 3334566667777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022758 191 NNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 191 ~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
..++..+..-...+.+...++
T Consensus 88 ~~~~~~ve~~r~~~~ea~~~~ 108 (146)
T PRK07720 88 MQAREQMNRKQQDLTEKNIEV 108 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777766665555555444
No 95
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=84.05 E-value=41 Score=32.25 Aligned_cols=63 Identities=6% Similarity=0.112 Sum_probs=39.5
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKA 138 (292)
Q Consensus 76 M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~ 138 (292)
-|+|+||+.=++..+..++.+++.-...+|..+.+++..-..+.+..+..-........-+.+
T Consensus 72 ~~~l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~ 134 (333)
T PF05816_consen 72 KGFLGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQE 134 (333)
T ss_pred hhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655555677777888888777777777777777666666655444444333333333
No 96
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=84.00 E-value=37 Score=33.16 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (292)
Q Consensus 110 emee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~ 148 (292)
+.+..+.+++..++...+.-+.++.++..++..++..+.
T Consensus 88 ~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a 126 (352)
T COG1566 88 DYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEA 126 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555566655555544443
No 97
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.77 E-value=32 Score=30.75 Aligned_cols=124 Identities=22% Similarity=0.296 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 022758 81 RLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED 160 (292)
Q Consensus 81 Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~Ed 160 (292)
+-+.=++.+-|++...--+=++-|...|.+|.......+..+..+...-+++..-+..++.++.++..+...- .+.
T Consensus 9 ~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y-~kd--- 84 (201)
T PF13851_consen 9 KAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY-EKD--- 84 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHH---
Confidence 3344455566666555445578899999999999999999999999999999999999999999988876642 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (292)
Q Consensus 161 LAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 220 (292)
...+..++..+...+..+..|+-....|+.++..+..+++.|..+...
T Consensus 85 ------------K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 85 ------------KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122334444455555556666666666666666666666666666544
No 98
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.65 E-value=65 Score=36.18 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 022758 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRL-- 199 (292)
Q Consensus 122 lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~-- 199 (292)
++..--.-..+++.+...+.+++.+... ..|.++-+-+.-.+....++.+..+..++.+....++.++..+..
T Consensus 937 i~k~q~~l~~le~~~~~~e~e~~~L~e~-----~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk 1011 (1293)
T KOG0996|consen 937 IAKAQKKLSELEREIEDTEKELDDLTEE-----LKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELK 1011 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444433333 234444443333344444444444444444443333333333333
Q ss_pred -----HHHHHHHHHHHHHHHHHH
Q 022758 200 -----LESKIQEARSKKDTLKAR 217 (292)
Q Consensus 200 -----Le~Ki~e~k~k~~~LkAr 217 (292)
++.|++....+...+...
T Consensus 1012 ~~rId~~~K~e~~~~~l~e~~~~ 1034 (1293)
T KOG0996|consen 1012 AERIDIENKLEAINGELNEIESK 1034 (1293)
T ss_pred HhhccHHHHHHHHHHHHHHHHhh
Confidence 344555555555554444
No 99
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.45 E-value=51 Score=32.93 Aligned_cols=111 Identities=18% Similarity=0.157 Sum_probs=55.9
Q ss_pred hcccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022758 94 LSSFEDPE--KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKS 171 (292)
Q Consensus 94 ld~~EDPe--~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~ 171 (292)
+..-+||. .-+-.+++.|...+.+.-.++..+...-...+..+...+.+... +..........|++.-.++++
T Consensus 136 l~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~----~~~eq~~q~~kl~~~~~E~kk- 210 (420)
T COG4942 136 LVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTT----LLSEQRAQQAKLAQLLEERKK- 210 (420)
T ss_pred hcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-
Confidence 44445653 44445555555555444444444444333333333333333221 122233333445554444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 212 (292)
....+..++...+...++|..+-..|+..|..++....
T Consensus 211 ---~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 211 ---TLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34456666666677777777777777777766665444
No 100
>PRK09343 prefoldin subunit beta; Provisional
Probab=83.45 E-value=23 Score=28.99 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e 147 (292)
|-..|.+.-..+...++.+..+......++.++.+.+.-..+++
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667777777888888888888888887665555544
No 101
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=83.11 E-value=21 Score=28.19 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhccCCCcHHHHHhcc
Q 022758 240 LSAFEKMEEKVLTMESQADSLNQLTTDDLEGKVAFT 275 (292)
Q Consensus 240 ~~~feR~eeki~~~EA~AeA~~eL~~~~Le~~fa~L 275 (292)
...++.|+++|..+|.-+..+++.+ ..||.+|+.+
T Consensus 65 l~~Id~Ie~~V~~LE~~v~~LD~ys-k~LE~k~k~l 99 (99)
T PF10046_consen 65 LQQIDQIEEQVTELEQTVYELDEYS-KELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcC
Confidence 5678999999999998888877653 5889888764
No 102
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=83.01 E-value=28 Score=29.54 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=30.3
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (292)
Q Consensus 99 DP-e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (292)
.| ..++++=-....+++.++.....++-......+.++...+.++.+.-+.|+.
T Consensus 45 ~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~ 99 (156)
T CHL00118 45 KPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQK 99 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 3566666666666666666665555555555555555555555554444444
No 103
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=82.98 E-value=53 Score=32.77 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNLVS----------NTRLLESKIQEARSKKDTLKARAQSAKTATKV 227 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~----------~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i 227 (292)
.....+.+++.++.++.....++++++. .+..|+..++-.+...+.+..|.+.++....+
T Consensus 318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~~ 387 (498)
T TIGR03007 318 ELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVSKQM 387 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 3334444444444444444444444443 33345555555555556666666666655444
No 104
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.92 E-value=33 Score=30.34 Aligned_cols=108 Identities=25% Similarity=0.343 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 128 ~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
..++|++.-..++++-..-..+++.|+++|+.|.||--.+- .+.+..+.+.- -.+
T Consensus 17 ~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeN-------------AIRkkne~~n~------------Lrl 71 (203)
T KOG3232|consen 17 TSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAEN-------------AIRKKNEAVNY------------LRL 71 (203)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHH-------------HHHHHHHHHHH------------HHH
Confidence 35666767677777766677889999999999999864321 11111222221 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------CCcHHHHHHHHHHHHHhHHHHHHHh
Q 022758 208 RSKKDTLKARAQSAKTATKVSEMLGNVN-----------TSSALSAFEKMEEKVLTMESQADSL 260 (292)
Q Consensus 208 k~k~~~LkAr~~~AkAq~~i~~~~~~~~-----------~~~a~~~feR~eeki~~~EA~AeA~ 260 (292)
-.+.+.+.+|.+.|-+..++..+++|+- .......++++|...+.++-+.+-+
T Consensus 72 ssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~m 135 (203)
T KOG3232|consen 72 SSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVM 135 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 5667777788888877777777766542 2223344566666666666555544
No 105
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.88 E-value=33 Score=30.22 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
...++..+......++.+...+..|.-.+..++.++..++.+-..|.-|.
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555566666666666666666653
No 106
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=82.86 E-value=59 Score=33.21 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~ 145 (292)
..|...+.-++.+|.+.+..+...........-.+..+..++..
T Consensus 305 ~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~ 348 (522)
T PF05701_consen 305 SSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNK 348 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence 33444444444444444444444444333333333333333333
No 107
>PRK00846 hypothetical protein; Provisional
Probab=82.84 E-value=13 Score=28.35 Aligned_cols=55 Identities=11% Similarity=0.047 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~Ak 222 (292)
+-...++++..|+..+.-++..++.|..-+.+....|..++.+...|.-|.....
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345678888888888888888888888888888888888888888877766654
No 108
>PRK11281 hypothetical protein; Provisional
Probab=82.77 E-value=43 Score=37.54 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=23.9
Q ss_pred HHHHHHHHhcccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 86 VKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQKR 131 (292)
Q Consensus 86 ira~~n~~ld~~EDP---e~mLeQ~Iremee~l~kar~alA~v~A~~k~ 131 (292)
+++.++.+ .+-++| .+.+-+.+++.-+-+.+......+.-+.+++
T Consensus 41 iq~~l~~~-~~~~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~ 88 (1113)
T PRK11281 41 VQAQLDAL-NKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQ 88 (1113)
T ss_pred HHHHHHHh-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 223444 3556666666666666666665554444333
No 109
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=82.59 E-value=28 Score=29.19 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e 147 (292)
.++++-=....+.+..+...-.++-......+..+..++.++....
T Consensus 34 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~ 79 (141)
T PRK08476 34 KFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIR 79 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555444444455555554444444444455555555555544443
No 110
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=82.53 E-value=10 Score=28.03 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 221 (292)
+++++..|+..+.-++..++.|..-+.+...+|..++.+...|..+....
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677777777777777777777777777777777777766665554
No 111
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=82.52 E-value=41 Score=33.25 Aligned_cols=13 Identities=15% Similarity=0.526 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhH
Q 022758 241 SAFEKMEEKVLTM 253 (292)
Q Consensus 241 ~~feR~eeki~~~ 253 (292)
.+||.++.||.+-
T Consensus 416 ~~leefkrriles 428 (442)
T PF06637_consen 416 ASLEEFKRRILES 428 (442)
T ss_pred HHHHHHHHHHHhc
Confidence 5788888888654
No 112
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.45 E-value=14 Score=34.69 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 022758 210 KKDTLKARAQSAKTA 224 (292)
Q Consensus 210 k~~~LkAr~~~AkAq 224 (292)
+.+.|..|+++....
T Consensus 99 r~~~l~~raRAmq~n 113 (265)
T COG3883 99 RQELLKKRARAMQVN 113 (265)
T ss_pred HHHHHHHHHHHHHHc
Confidence 345555565555443
No 113
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=82.21 E-value=48 Score=35.67 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022758 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (292)
Q Consensus 103 mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (292)
-++..|.+++++..++++....+......+++...+++.+.++++++-...+.+
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~ 570 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEE 570 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444433333
No 114
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.21 E-value=66 Score=33.32 Aligned_cols=64 Identities=23% Similarity=0.382 Sum_probs=53.7
Q ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 022758 99 DP--EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 163 (292)
Q Consensus 99 DP--e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAr 163 (292)
+| +..|+.-.+.+++++.+.+..+.+......-.++.++.+..++.+-+...+. |+..+++|=.
T Consensus 257 ~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~-lq~~~d~Lk~ 322 (581)
T KOG0995|consen 257 DPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEK-LQKENDELKK 322 (581)
T ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 55 6788888889999999999999999888888999999999999888888765 7777776643
No 115
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=82.19 E-value=18 Score=38.48 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 164 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (292)
Q Consensus 164 eAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k 208 (292)
.||++|..+.+..+.+++++++....-++|......|...+..++
T Consensus 213 aAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 213 AALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 567777777777777777777777777777777766666666665
No 116
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.08 E-value=51 Score=35.64 Aligned_cols=91 Identities=12% Similarity=0.132 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 125 VLASQKRLENKCKAAEQASEDWYRKAQLA-LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESK 203 (292)
Q Consensus 125 v~A~~k~le~kl~~~~~~~~~~e~rA~~A-L~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~K 203 (292)
....+..+..++......+..|...++.| +..|-+.-+..--....+......+...++.+++..+.+++++...+-.+
T Consensus 749 l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~ 828 (970)
T KOG0946|consen 749 LENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLER 828 (970)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555566667777777755 33333221111111111122223344444445555555555555555444
Q ss_pred HHHHHHHHHHHH
Q 022758 204 IQEARSKKDTLK 215 (292)
Q Consensus 204 i~e~k~k~~~Lk 215 (292)
+...-.-++.+.
T Consensus 829 tsa~a~~le~m~ 840 (970)
T KOG0946|consen 829 TSAAADSLESMG 840 (970)
T ss_pred HHhhhhhhHHhh
Confidence 444444444433
No 117
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=81.70 E-value=1e+02 Score=35.27 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
..+++.++..++.....+..++.++.....+...+.
T Consensus 881 ~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~ 916 (1353)
T TIGR02680 881 RARAARAESDAREAAEDAAEARAEAEEASLRLRTLE 916 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444433333
No 118
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=81.69 E-value=19 Score=30.88 Aligned_cols=97 Identities=18% Similarity=0.259 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCCcHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVS---NTRLLESKIQEARSKKDTLKARAQSAKTA----TKVSEMLGNVNTSSALSAFEK 245 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~---~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq----~~i~~~~~~~~~~~a~~~feR 245 (292)
..++..++.|+.+...++..|+. ....|+.+|++++.+.......++..-+. ..|..++.+.+..++..-
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~akakn~~av--- 102 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKGAKAKNPKAV--- 102 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---
Confidence 56777888888888888888887 77788888888888887555554443333 345555555444332110
Q ss_pred HHHHHHhHHHHHHHhhccCC---CcHHHHHhcccCCC
Q 022758 246 MEEKVLTMESQADSLNQLTT---DDLEGKVAFTSFSF 279 (292)
Q Consensus 246 ~eeki~~~EA~AeA~~eL~~---~~Le~~fa~Le~~~ 279 (292)
..-+. .+.+ .++. -+|++++..|-.++
T Consensus 103 -~allD-----~d~l-~l~~dg~~Gldeqi~~lkes~ 132 (155)
T PF06810_consen 103 -KALLD-----LDKL-KLDDDGLKGLDEQIKALKESD 132 (155)
T ss_pred -HHhcC-----HHHe-eeCCCccccHHHHHHHHHhcC
Confidence 00000 0011 1121 36899998888776
No 119
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.19 E-value=39 Score=30.02 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=18.0
Q ss_pred CCCcccccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Q 022758 68 GGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVL 109 (292)
Q Consensus 68 ~~~~~~~~M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Ir 109 (292)
-|-++|. |-.|.=+..-|+.- .+.||...++-.+.
T Consensus 42 Eg~A~Gl-m~~f~~l~e~v~~l------~idd~~~~f~~~~~ 76 (190)
T PF05266_consen 42 EGMAVGL-MVTFANLAEKVKKL------QIDDSRSSFESLMK 76 (190)
T ss_pred hHHHHHH-HHHHHHHHHHHHHc------ccCCcHHHHHHHHH
Confidence 3445555 44444444444332 56688766664443
No 120
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=81.19 E-value=52 Score=31.45 Aligned_cols=105 Identities=9% Similarity=0.128 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (292)
Q Consensus 110 emee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~ 189 (292)
++...+.+++.++......-..++++++.++..+..+...... -..+...-....+....++.+....+..++...+..
T Consensus 71 ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~-~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~ 149 (301)
T PF06120_consen 71 QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAE-KGITENGYIINHLMSQADATRKLAEATRELAVAQER 149 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555444455555666666666554432111 111111122233334455566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 190 VNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 190 v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
+.++..........+.+...++-.+.
T Consensus 150 l~q~~~k~~~~q~~l~~~~~~~~~~i 175 (301)
T PF06120_consen 150 LEQMQSKASETQATLNDLTEQRIDLI 175 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655333
No 121
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=81.10 E-value=75 Score=33.21 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (292)
Q Consensus 132 le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k 210 (292)
+-.++..++.++.....+...+- +++-......+...++..+..++..+......+..++..+..++.++..+..+
T Consensus 396 ~~~~~~~~e~el~~l~~~l~~~~---~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKISTIP---SEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQ 471 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433221 22333444555555556666666666655555555555555555555444333
No 122
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=80.84 E-value=42 Score=30.17 Aligned_cols=52 Identities=21% Similarity=0.237 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A 153 (292)
..-+-.+.++++++.-+...+-.+.+....+..+.+.+...+.....+.+.|
T Consensus 105 E~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEa 156 (205)
T KOG1003|consen 105 EAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEA 156 (205)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence 3445556677777777777777777777777778777777777777754443
No 123
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=80.78 E-value=23 Score=27.19 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=54.6
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022758 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (292)
Q Consensus 95 d~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (292)
..+.|-..+|...|.++++.=..+.+.+..+...+..|.++...++.+-..|+++...-|.+
T Consensus 14 qqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 14 QQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34446678999999999999999999999999999999999999999999999998876543
No 124
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=80.50 E-value=42 Score=29.99 Aligned_cols=85 Identities=21% Similarity=0.251 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (292)
Q Consensus 115 l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk 194 (292)
|....-.-++.-|.+..+++.+...+..+..+......+-... .....+.....+++..|+.+....+.++++|.
T Consensus 100 LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~-----~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ 174 (192)
T PF11180_consen 100 LADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQ-----QQVAARQQQARQEAQALEAERRAAQAQLRQLQ 174 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555566666666666655555544433332221 12334445555666666666666666666666
Q ss_pred HHHHHHHHHH
Q 022758 195 SNTRLLESKI 204 (292)
Q Consensus 195 ~~l~~Le~Ki 204 (292)
.+++.|+.+.
T Consensus 175 ~qv~~Lq~q~ 184 (192)
T PF11180_consen 175 RQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHh
Confidence 6666665543
No 125
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=80.41 E-value=43 Score=30.00 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=40.1
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (292)
Q Consensus 99 DP-e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (292)
.| ..+|+.=-..+.++|.++.....++-......+.++.+.+.++.+.-+.|+...
T Consensus 76 ~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea 132 (204)
T PRK09174 76 PRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAA 132 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 377777777777777777777777777777777777777777777766665433
No 126
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=80.36 E-value=33 Score=28.68 Aligned_cols=86 Identities=15% Similarity=0.195 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 130 KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (292)
Q Consensus 130 k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~ 209 (292)
..+......+...+..++.+.... +.-|+.++.... ...+-.+-..... +++.-.++..+..
T Consensus 4 ~~Lk~~~~~L~~~~~~le~~i~~~-----~~~~k~~~~~~~--~~~A~~~lk~~k~-----------~~k~~~~~~~~~~ 65 (171)
T PF03357_consen 4 LKLKKTIRRLEKQIKRLEKKIKKL-----EKKAKKAIKKGN--KERAKIYLKRKKR-----------LEKQLEKLLNQLS 65 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----HHHHHHHHCTT---HHHHHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCC--hHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 345556666666666666666553 345555554433 1222222222222 2222333344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 022758 210 KKDTLKARAQSAKTATKVSEMLGN 233 (292)
Q Consensus 210 k~~~LkAr~~~AkAq~~i~~~~~~ 233 (292)
..+.+..+...+.....+..++..
T Consensus 66 ~l~~~~~~ie~a~~~~~v~~al~~ 89 (171)
T PF03357_consen 66 NLESVLLQIETAQSNQQVVKALKQ 89 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHSSS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666665555554443
No 127
>PRK04406 hypothetical protein; Provisional
Probab=80.20 E-value=21 Score=27.01 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (292)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 220 (292)
..++++..|+..+.-++..++.|..-+.+-...|..++++...|.-|...
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888888888888888888888887777666544
No 128
>PRK00736 hypothetical protein; Provisional
Probab=80.05 E-value=15 Score=27.13 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 220 (292)
.++++..|+..+.-++..++.|..-+.+-...|..++.+...|.-|...
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777777777777777666544
No 129
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=79.93 E-value=51 Score=30.51 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (292)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 216 (292)
....|...++.++.....|...+..+..++..+..++..++-
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~ 131 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444433
No 130
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=79.83 E-value=48 Score=30.24 Aligned_cols=43 Identities=9% Similarity=0.241 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
....+.++..++..++.....++..+..+.+++..++..+...
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555544444444433
No 131
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.61 E-value=1.1e+02 Score=34.05 Aligned_cols=100 Identities=19% Similarity=0.303 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------HHHHHHhcCCC--CCcHHHHHHHHH
Q 022758 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK-TA-------TKVSEMLGNVN--TSSALSAFEKME 247 (292)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~Ak-Aq-------~~i~~~~~~~~--~~~a~~~feR~e 247 (292)
.+..++++.....++++..+.+|+.++.-++..++++.++..-.- -. ..+++.+.+.. -.++...+..++
T Consensus 255 ~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~ 334 (1200)
T KOG0964|consen 255 QYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVK 334 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHH
Confidence 455566677777888888888888888888888888888843321 11 12223332221 145778899999
Q ss_pred HHHHhHHHHHHHhhc----cC--CCcHHHHHhcccC
Q 022758 248 EKVLTMESQADSLNQ----LT--TDDLEGKVAFTSF 277 (292)
Q Consensus 248 eki~~~EA~AeA~~e----L~--~~~Le~~fa~Le~ 277 (292)
++|.+.+.+...+.. |- .+.+-.+++.|+.
T Consensus 335 ~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 335 DKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 999988888776532 11 2345556665554
No 132
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.41 E-value=86 Score=32.86 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHH-------------HHHHHHHHH
Q 022758 119 RQATAQVLASQKRLENKCKAAEQASEDW-----YRKAQLALQKGEEDLAREALKRRKS-------------YADNANALK 180 (292)
Q Consensus 119 r~alA~v~A~~k~le~kl~~~~~~~~~~-----e~rA~~AL~~G~EdLAreAL~rk~~-------------~e~~~~~l~ 180 (292)
|.++|.+.-....++.++...++.+.+. .+++..-+=.|.- |+ +|+.+... +.-.+..+.
T Consensus 344 RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~d~~rika~VIrG~~-l~-eal~~~~e~~~p~e~~~~~~~e~~ei~~~~ 421 (652)
T COG2433 344 RDALAAAYKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYP-LA-EALSKVKEEERPREKEGTEEEERREITVYE 421 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHeecCCc-HH-HHHHHHHhhhccccccccccccccchhHHH
Confidence 5667777777888888888888877665 5666666666662 11 11111111 111223444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (292)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~Ak 222 (292)
..+......++.|+.....|+..+.+++.....|+++...++
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555544443
No 133
>PF13514 AAA_27: AAA domain
Probab=79.18 E-value=1.1e+02 Score=34.08 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022758 126 LASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (292)
Q Consensus 126 ~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (292)
......++.+++.++..+..|+.++..-+..
T Consensus 742 ~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~ 772 (1111)
T PF13514_consen 742 LAEIRELRRRIEQMEADLAAFEEQVAALAER 772 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666777777777766654433
No 134
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=79.01 E-value=1.3 Score=36.06 Aligned_cols=49 Identities=12% Similarity=0.248 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (292)
+|.+|..+..++..+....+.....-..++.++..+......+.+....
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~ 71 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQ 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhh
Confidence 5677777777777777777766666666666666666655555544433
No 135
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=79.01 E-value=43 Score=29.22 Aligned_cols=57 Identities=11% Similarity=0.179 Sum_probs=35.7
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (292)
Q Consensus 99 DP-e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~ 155 (292)
.| ..+|+.=-..+.+++.++...-.++-......+.++...+.+....-+.|+...+
T Consensus 54 ~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~ 111 (181)
T PRK13454 54 PRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQ 111 (181)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46 3677766666666777776666666666666666666666666666665544333
No 136
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=78.94 E-value=30 Score=35.74 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=28.5
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (292)
Q Consensus 95 d~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (292)
..+-||..+|++.=-.-.+...++++.+-..-...+....++. -..+++.+.++...
T Consensus 146 ~~lp~~~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~ 202 (555)
T TIGR03545 146 SQLPDPRALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEA 202 (555)
T ss_pred ccCCCHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 3455888888876544445555555554443333333222222 14444555554444
No 137
>PRK04325 hypothetical protein; Provisional
Probab=78.89 E-value=22 Score=26.70 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (292)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 220 (292)
..++++..|+..+.-++..++.|..-+.+-...|..++++...|.-|...
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888888888888888877777788777777777665544
No 138
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=78.76 E-value=53 Score=30.09 Aligned_cols=64 Identities=14% Similarity=0.221 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHhcccC--CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSSFE--DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~E--DPe-~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~ 145 (292)
||+++++.|.+- --+++ ||. .-..+||.+++.+|.++-.++-.++..++.+-.-+.+.-.-+..
T Consensus 2 ~~~~~~~~~~~~----~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~ 68 (234)
T cd07664 2 MVNKAADAVNKM----TIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAM 68 (234)
T ss_pred hhhHHHHHHHhc----cccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777766543 33444 442 56778999999999999999988888888777766665554433
No 139
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.72 E-value=75 Score=31.79 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (292)
Q Consensus 99 DPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~ 148 (292)
|--.-|+..|-+.+.++..++..+.+.-..-+.+++++++....+..++.
T Consensus 59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 59 DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 44456666667777777777777777777777777777766665555443
No 140
>PRK00295 hypothetical protein; Provisional
Probab=78.66 E-value=23 Score=26.18 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 220 (292)
.++++..|+..+.-++..++.|..-+-+-...|..++.+...|..|...
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777777777777777666666555444
No 141
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=78.37 E-value=61 Score=30.52 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-HHHHH
Q 022758 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSS-ALSAF 243 (292)
Q Consensus 165 AL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~-a~~~f 243 (292)
....+..+...-..+++|.+.......-|--.+..-+..++++......|++...-+-++.. ..+ .+- ..--|
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR--~~l----lDPAinl~F 179 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLR--STL----LDPAINLFF 179 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHH--HHh----hChHHHHHH
Confidence 33444455555567777888888887888888888888899999999999988655444321 111 111 22568
Q ss_pred HHHHHHHHhHHHHHH
Q 022758 244 EKMEEKVLTMESQAD 258 (292)
Q Consensus 244 eR~eeki~~~EA~Ae 258 (292)
.|++..+++..+..+
T Consensus 180 ~rlK~ele~tk~Kle 194 (330)
T KOG2991|consen 180 LRLKGELEQTKDKLE 194 (330)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887777665554
No 142
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.35 E-value=25 Score=26.53 Aligned_cols=63 Identities=14% Similarity=0.262 Sum_probs=53.6
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022758 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (292)
Q Consensus 94 ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (292)
+..+.|...+|.-.|.++++.-....+.+..+.....-|+++-+.+..+-.-|+++.+.-|-+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444557788999999999999998888888888888899999999999999999998876644
No 143
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=78.30 E-value=52 Score=29.73 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 220 (292)
....+.....+-..++.+...+..++.+-..|+..++++..+......|+.+
T Consensus 85 L~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~a 136 (207)
T PF05010_consen 85 LNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQA 136 (207)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666666666666666666666655555555555444
No 144
>PLN02718 Probable galacturonosyltransferase
Probab=78.01 E-value=14 Score=38.50 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Q 022758 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (292)
Q Consensus 99 DPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 178 (292)
+|..+-|-.|+.|.++|..||.=+ .+|..+--..-..++...+.+.+.-.-.| ..+.||=..+..+.+..+..+..
T Consensus 158 ~~~~~~d~~v~~~~dql~~ak~y~--~~a~~~~~~~~~~el~~~i~e~~~~l~~~--~~d~~lp~~~~~~~~~m~~~~~~ 233 (603)
T PLN02718 158 QPRRATDEKVKEIRDKIIQAKAYL--NLAPPGSNSQLVKELRLRTKELERAVGDA--TKDKDLSKSALQRMKSMEVTLYK 233 (603)
T ss_pred CcccCcHHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHhcc--cCCCCCCHhHHHHHHHHHHHHHH
Confidence 567889999999999999999876 66666666666777777887777766666 55666999998888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (292)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k 210 (292)
-+.........+.+|+.-+..+|.++.-.+.+
T Consensus 234 a~~~~~d~~~~~~klr~~~~~~e~~~~~~~~q 265 (603)
T PLN02718 234 ASRVFPNCPAIATKLRAMTYNTEEQVRAQKNQ 265 (603)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888888888888877665544
No 145
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=77.93 E-value=24 Score=25.72 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
+.+.+.+...+...-..+..+.........|..+|..++.+.+.++
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444444444444444444444443
No 146
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=77.86 E-value=22 Score=25.53 Aligned_cols=15 Identities=13% Similarity=0.483 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 022758 216 ARAQSAKTATKVSEM 230 (292)
Q Consensus 216 Ar~~~AkAq~~i~~~ 230 (292)
+..++++|...+...
T Consensus 36 ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 36 AKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 444556666655543
No 147
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=77.63 E-value=92 Score=32.23 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH---------HHHHHHHH
Q 022758 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA---------REALKRRK 170 (292)
Q Consensus 100 Pe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLA---------reAL~rk~ 170 (292)
+..+.+-.|..+...|.+.....+.+...-.+++-+++++.....+-++.+.-+=..=++.+. -.+..+++
T Consensus 86 ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 86 IKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 345556666666666666655555555555555555555555555554444444333332222 12345566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 171 SYADNANALKAQLDQQKNVVNNLVSNTR 198 (292)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~ 198 (292)
.+++.+..|..+...+..++..++..+.
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6677777777777666666666665443
No 148
>PRK02793 phi X174 lysis protein; Provisional
Probab=77.36 E-value=23 Score=26.46 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 220 (292)
.++++..|+..+.-++..++.|..-+.+....|..++.+...|.-+...
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777777777777777777777777777777777777665544
No 149
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=77.34 E-value=92 Score=32.09 Aligned_cols=23 Identities=9% Similarity=0.281 Sum_probs=17.4
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHH
Q 022758 237 SSALSAFEKMEEKVLTMESQADS 259 (292)
Q Consensus 237 ~~a~~~feR~eeki~~~EA~AeA 259 (292)
.+-...|..+.++|.....+.+.
T Consensus 444 ~~y~~~~~~~~~~i~~l~~~L~~ 466 (569)
T PRK04778 444 EDYLEMFFEVSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34557788888888888877766
No 150
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.27 E-value=55 Score=29.46 Aligned_cols=18 Identities=6% Similarity=0.300 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022758 108 VLEMNDDLVKMRQATAQV 125 (292)
Q Consensus 108 Iremee~l~kar~alA~v 125 (292)
+-+++.++.+++..++.+
T Consensus 95 lp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666666555553
No 151
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=77.22 E-value=41 Score=27.93 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (292)
Q Consensus 110 emee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~ 189 (292)
=.+.....+...++.+.......+.++..+.....++..+.......|=. ......|..-+..|...+..+...
T Consensus 13 l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~------~~~l~~~~~fi~~L~~~I~~q~~~ 86 (147)
T PRK05689 13 LAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMT------SSWWINYQQFLQQLEKAITQQRQQ 86 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667778888888888888888998888888888877665444432 123345555666666777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022758 190 VNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 190 v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
+..++..+......+.+...++
T Consensus 87 v~~~~~~ve~~r~~~~~a~~~~ 108 (147)
T PRK05689 87 LTQWTQKVDNARKYWQEKKQRL 108 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665555555544443
No 152
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=77.16 E-value=45 Score=29.93 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQ 124 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~ 124 (292)
+..|.-.+.++++.|.+++.....
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888899999999888888765
No 153
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=76.97 E-value=1e+02 Score=32.30 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK------AQLALQKGEEDLAREALKRRKSYADN 175 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~r------A~~AL~~G~EdLAreAL~rk~~~e~~ 175 (292)
.-|...|.++..++.++...+.......+++..++.+.......++.. +..-|..+++.+++. -.-...-.+.
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL-~~~v~~s~~r 409 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKL-QALVEASEQR 409 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH-HHHHHHHHHH
Confidence 555556666666666666665555555555555555554444444333 333355566555322 1223334555
Q ss_pred HHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKN 188 (292)
Q Consensus 176 ~~~l~~ql~~~~~ 188 (292)
+..|..+|+..+.
T Consensus 410 l~~L~~qWe~~R~ 422 (594)
T PF05667_consen 410 LVELAQQWEKHRA 422 (594)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665444
No 154
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.90 E-value=48 Score=28.63 Aligned_cols=22 Identities=9% Similarity=0.306 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLV 194 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk 194 (292)
.+.+..++..+.........+.
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444443333333333
No 155
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=76.83 E-value=12 Score=27.11 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q 022758 137 KAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (292)
Q Consensus 137 ~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~ 180 (292)
+.++....++..-|..|-+.||.+-||.-+.--+.|++.+...+
T Consensus 2 ~~L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~~ 45 (59)
T smart00685 2 ALLQQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAAR 45 (59)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHHH
Confidence 45667778888889999999999999999998888887776554
No 156
>PRK02119 hypothetical protein; Provisional
Probab=76.80 E-value=29 Score=26.06 Aligned_cols=51 Identities=10% Similarity=0.148 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (292)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 220 (292)
...++++..|+..+.-++..++.|..-+.+-...|..++++...|.-+...
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446777888888888888888888888888888888887777777665544
No 157
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=76.59 E-value=79 Score=30.92 Aligned_cols=135 Identities=12% Similarity=0.175 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 116 VKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (292)
Q Consensus 116 ~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~ 195 (292)
...|..+.+.......++..+........+........|.+ .-.|.+.+-.+++.+-+++......+..++.
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lek--------I~sREk~iN~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEK--------IESREKYINNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666655555444332 1223333444444444444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHHHhHHHHHHHh
Q 022758 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSS----ALSAFEKMEEKVLTMESQADSL 260 (292)
Q Consensus 196 ~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~----a~~~feR~eeki~~~EA~AeA~ 260 (292)
.+.++..-+.++...+..+.-..... +..|.+-..+++.++ ...++.+|+..|-+|+-+...+
T Consensus 288 ~y~~~s~~V~~~t~~L~~IseeLe~v--K~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVl 354 (359)
T PF10498_consen 288 KYKQASEGVSERTRELAEISEELEQV--KQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVL 354 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhee
Confidence 55554444444444444444333322 233444555554443 3468888999888888776543
No 158
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.17 E-value=74 Score=30.38 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022758 199 LLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 199 ~Le~Ki~e~k~k~~~LkAr~ 218 (292)
.+...+.++..+++.+.++.
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444333
No 159
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=75.62 E-value=1.6e+02 Score=33.89 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
+++..+....+........-...+.+++.++.+...+.......
T Consensus 340 ~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~ 383 (1353)
T TIGR02680 340 ADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERE 383 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433
No 160
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=75.53 E-value=0.9 Score=37.04 Aligned_cols=64 Identities=9% Similarity=0.244 Sum_probs=23.8
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (292)
Q Consensus 88 a~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~ 151 (292)
..|+++|+.+.+-...|...+.++...+..+...+...-.....+.+.+..++..+.+....|.
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~ 84 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAE 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 3466666666666666777777777777777777776666666666666666665555544443
No 161
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=75.30 E-value=39 Score=26.70 Aligned_cols=94 Identities=17% Similarity=0.275 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 113 DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR---KAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (292)
Q Consensus 113 e~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~---rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~ 189 (292)
..+.+.+..+..+......++.++.+...-..++.. -...=..-|. ++.+ ....+-...++..++..+..
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~------vfv~-~~~~ea~~~Le~~~e~le~~ 78 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGN------VLVK-QEKEEARTELKERLETIELR 78 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhh------HHhh-ccHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444433331 1111111222 2222 33444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 190 VNNLVSNTRLLESKIQEARSKKDT 213 (292)
Q Consensus 190 v~~Lk~~l~~Le~Ki~e~k~k~~~ 213 (292)
+..+..++..++.++.+++.++..
T Consensus 79 i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 79 IKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555543
No 162
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=75.16 E-value=1.2e+02 Score=32.42 Aligned_cols=125 Identities=20% Similarity=0.258 Sum_probs=86.6
Q ss_pred HHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022758 92 AILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKS 171 (292)
Q Consensus 92 ~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~ 171 (292)
.++..-.+-+.-+.+-|.+++.++..+|..+..+.+...++.....++......++.+-..- +++ -+++=.|-.+
T Consensus 20 ~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~l----r~e-~ke~K~rE~r 94 (717)
T PF09730_consen 20 SLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRL----REE-IKEYKFREAR 94 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHHHHHHHHH
Confidence 34555556678889999999999999999999999999999999999988887777654432 222 3455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTR---LLESKIQEARSKKDTLKARAQSA 221 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~---~Le~Ki~e~k~k~~~LkAr~~~A 221 (292)
+-.....|+..--.++.+|..|+.+.. -+++.|..+....+.|..+..-|
T Consensus 95 ll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 95 LLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666665433 34555555555555665554444
No 163
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=75.06 E-value=38 Score=26.47 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL 161 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdL 161 (292)
|...+..+......+...+..+-.....++.+.......+....+....+|..-.+.|
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~l 62 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQL 62 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666666666677777777776666666665554443
No 164
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=75.04 E-value=93 Score=30.99 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW-YRKAQLALQKGE--EDLAREALKRRKSYADNANA 178 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~-e~rA~~AL~~G~--EdLAreAL~rk~~~e~~~~~ 178 (292)
....+..++.+-+-.++++.+-.+-.+++..+.++.++.....+- ++.|+.--+..| -.|+. ...+...++++...
T Consensus 91 ~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~-l~~qr~ql~aq~qs 169 (499)
T COG4372 91 GTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT-LAEQRRQLEAQAQS 169 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 444555555555555555566655555555555555444333221 111111111111 11222 22334445555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
+.++-.+++..+.+|+.....|..+-+....+-..|..|
T Consensus 170 l~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r 208 (499)
T COG4372 170 LQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATR 208 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655554444444443344333
No 165
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=75.02 E-value=1.1e+02 Score=31.79 Aligned_cols=162 Identities=19% Similarity=0.260 Sum_probs=82.0
Q ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 022758 93 ILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSY 172 (292)
Q Consensus 93 ~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~ 172 (292)
+||.+.+........++..=+...++++.+.......+...++.+-++=++++++. ..++-|+++-=.+=-.+....
T Consensus 144 lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~---~~l~~gE~e~L~~e~~rLsn~ 220 (557)
T COG0497 144 LLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEE---LNLQPGEDEELEEERKRLSNS 220 (557)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHhhH
Confidence 45555554433334466666666667777777777777777777777766666653 457777653322222333333
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCCCcHHH
Q 022758 173 ADNANALKAQLDQQK------NVVNNLVSNTRLLESKIQEARSKKDTLK-----ARAQSAKTATKVSEMLGNVNTSSALS 241 (292)
Q Consensus 173 e~~~~~l~~ql~~~~------~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk-----Ar~~~AkAq~~i~~~~~~~~~~~a~~ 241 (292)
++-.......++.+. .....+...+..|.. +.++-.+...+. +-.+...+...++..+.++..+ ..
T Consensus 221 ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~-~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~D--p~ 297 (557)
T COG0497 221 EKLAEAIQNALELLSGEDDTVSALSLLGRALEALED-LSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFD--PN 297 (557)
T ss_pred HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH-hhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--HH
Confidence 333333333333332 122223222222211 122222222222 2234445556666666666432 25
Q ss_pred HHHHHHHHHHhHHHHHHHh
Q 022758 242 AFEKMEEKVLTMESQADSL 260 (292)
Q Consensus 242 ~feR~eeki~~~EA~AeA~ 260 (292)
.|+.+++|+...-.-+.=+
T Consensus 298 ~L~~ve~Rl~~L~~l~RKY 316 (557)
T COG0497 298 RLEEVEERLFALKSLARKY 316 (557)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7888888877766555544
No 166
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.78 E-value=1.3e+02 Score=32.62 Aligned_cols=47 Identities=6% Similarity=0.077 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (292)
Q Consensus 98 EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~ 144 (292)
-+-...|++-|.|.+-.+...+..+..+-......-..+++++.++.
T Consensus 450 n~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarik 496 (1118)
T KOG1029|consen 450 NFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIK 496 (1118)
T ss_pred HHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666655554443333333333333333
No 167
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=74.70 E-value=1.1e+02 Score=31.68 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki 204 (292)
...|..++..+...+.+|+..+..+..+.
T Consensus 208 ~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 208 RESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443333
No 168
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=74.66 E-value=39 Score=34.23 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
+..+.+.++.+..+...+...+..++.++++++.++..|..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555444
No 169
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=74.48 E-value=82 Score=30.08 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022758 195 SNTRLLESKIQEARSKK 211 (292)
Q Consensus 195 ~~l~~Le~Ki~e~k~k~ 211 (292)
.....++.++.-...+.
T Consensus 113 ~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 113 EERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 170
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=73.84 E-value=73 Score=29.25 Aligned_cols=108 Identities=12% Similarity=0.215 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLA-----SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A-----~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 176 (292)
..|...|..+...+..+-..+...-. ....+.+.+++++....+...+= =.+....|-.-+..-..+-.++
T Consensus 90 ~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~----f~~~~~~Ae~El~~A~~LL~~v 165 (264)
T PF06008_consen 90 QDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD----FTPQRQNAEDELKEAEDLLSRV 165 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555444444433322 34555666666666666665552 1222334444444444444444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 177 NAL-KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (292)
Q Consensus 177 ~~l-~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 213 (292)
... ..-+.+.+.....+...+.+...|+.+++.-.+.
T Consensus 166 ~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~e 203 (264)
T PF06008_consen 166 QKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNE 203 (264)
T ss_pred HHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442 3444444444444444444444444444444443
No 171
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=73.72 E-value=93 Score=30.35 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 022758 107 AVLEMNDDLVKM 118 (292)
Q Consensus 107 ~Iremee~l~ka 118 (292)
.+.+++.++..+
T Consensus 100 ~l~~A~a~l~~a 111 (390)
T PRK15136 100 AFEKAKTALANS 111 (390)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 172
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.62 E-value=93 Score=30.34 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=61.4
Q ss_pred ccccccccccccCccceeeeecccc-ccCCCCcccccCCCcccccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Q 022758 32 MVKKPLTTSFFNGGVGALKVTRLRI-APSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLE 110 (292)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Ire 110 (292)
..++|+.++.-.||+..+-.-...- ..++. ..-|.++++-++..=+.+-++....+-++. +--.+.+
T Consensus 169 ~~~~p~p~p~~~~gas~~~~~~~d~~~~yp~-----n~~~~~~irasvisa~~eklR~r~eeeme~-------~~aeq~s 236 (365)
T KOG2391|consen 169 AYKPPLPPPPPPGGASALPYMTDDNAEPYPP-----NASGKLVIRASVISAVREKLRRRREEEMER-------LQAEQES 236 (365)
T ss_pred CcCCCCCCCCCCCccccCcccCCCCCCcCCC-----CcccccchhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 6778999999999977443322221 11221 111233322222222222222222221111 1222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 022758 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (292)
Q Consensus 111 mee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (292)
++.--.+++.......+.+..||+++..+++.++=+..+.+.||.+-.
T Consensus 237 lkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~ 284 (365)
T KOG2391|consen 237 LKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAE 284 (365)
T ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 444444555556667777888899999888888888888888766543
No 173
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.38 E-value=36 Score=29.70 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (292)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ 202 (292)
....++++.++.+++..+..++.|+.+...+..
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555556666666655555555555555444
No 174
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=73.25 E-value=40 Score=29.66 Aligned_cols=95 Identities=12% Similarity=0.177 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (292)
Q Consensus 108 Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~ 187 (292)
+.+++..+.+.+..++.+.-.+-.+..++..+...+.+.+.... .....+..++..+..++
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~-------------------~~~~~l~~l~~~~~~L~ 129 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELS-------------------EKERRLAELEAELAQLE 129 (194)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHH-------------------HHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555555555555544443222 12233444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 188 NVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (292)
Q Consensus 188 ~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 221 (292)
..+..+...+.....-++.++.+...|....+.+
T Consensus 130 ~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~ 163 (194)
T PF08614_consen 130 EKIKDLEEELKEKNKANEILQDELQALQLQLNML 163 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555544443
No 175
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=73.25 E-value=1.3e+02 Score=31.76 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRL 199 (292)
Q Consensus 161 LAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~ 199 (292)
+++.+.......+.++..++.++.+...+...|...+..
T Consensus 372 ~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~ 410 (656)
T PRK06975 372 KTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQD 410 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555544444444444433
No 176
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=73.21 E-value=1.3e+02 Score=33.49 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 022758 139 AEQASEDWYRKA 150 (292)
Q Consensus 139 ~~~~~~~~e~rA 150 (292)
++-++.+++++.
T Consensus 305 lel~~kdlq~~i 316 (1200)
T KOG0964|consen 305 LELKIKDLQDQI 316 (1200)
T ss_pred hhhhhHHHHHHh
Confidence 333444444443
No 177
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.13 E-value=1.6e+02 Score=32.82 Aligned_cols=44 Identities=18% Similarity=0.313 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
...+.++-.+++++..+...+..+..++.++..++.+...+.+.
T Consensus 815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~k 858 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAK 858 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555544
No 178
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=72.99 E-value=52 Score=27.15 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022758 200 LESKIQEARSKKDTLKAR 217 (292)
Q Consensus 200 Le~Ki~e~k~k~~~LkAr 217 (292)
|+..+.+++.+.+.|..+
T Consensus 103 le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 103 LEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 179
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=72.92 E-value=23 Score=26.11 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (292)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k 208 (292)
..++.++.|...+..+...++.|+..+..|..++.++.
T Consensus 15 ~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 15 FQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555555555555555555555555555554443
No 180
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=72.90 E-value=25 Score=27.52 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 022758 190 VNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSS 238 (292)
Q Consensus 190 v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~ 238 (292)
+.+++....+|....+.++.++....+..+.++.+++..+...+++.++
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~sr~~ 73 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRLSRDS 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCHHH
Confidence 3444455666666667777777777777777777777777776665433
No 181
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=72.41 E-value=1.3e+02 Score=31.71 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022758 129 QKRLENKCKAAEQASEDWYRK 149 (292)
Q Consensus 129 ~k~le~kl~~~~~~~~~~e~r 149 (292)
-..|+..+++++..+.+++.+
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~ 458 (652)
T COG2433 438 NSELKRELEELKREIEKLESE 458 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 182
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=72.23 E-value=63 Score=32.56 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 84 RVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 139 (292)
Q Consensus 84 ~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~ 139 (292)
..-+-.+|.+...+|. -.-.+|.+.|+++.|.+++..--.|-.++.-|++++.++
T Consensus 238 k~akehv~km~kdle~-Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea 292 (575)
T KOG4403|consen 238 KKAKEHVNKMMKDLEG-LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEA 292 (575)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhh
Confidence 3344556666655553 345688999999999999998888888888888888743
No 183
>PRK00295 hypothetical protein; Provisional
Probab=72.06 E-value=37 Score=25.10 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
.++.++.|-..+.++..+++.|+..+..|..++.++
T Consensus 17 qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 17 QDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555554444443
No 184
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=71.90 E-value=17 Score=29.43 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHcCCHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR--------KAQLALQKGEEDLARE 164 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~--------rA~~AL~~G~EdLAre 164 (292)
.-+++.|.++-+++..++..+..++-.-..|..+-..++..+.+.+. ....-+..|.+.||+-
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~L 81 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARL 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHH
Confidence 34889999999999999999999999999999999999999988865 3333466677777764
No 185
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=71.77 E-value=19 Score=29.31 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (292)
Q Consensus 103 mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~ 146 (292)
-+++.|.++-+++..++..++.++-.-..|..+-+.++..+.+.
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38899999999999999999999999999999999999888876
No 186
>PLN02829 Probable galacturonosyltransferase
Probab=71.75 E-value=23 Score=37.07 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~ 180 (292)
+.|-|-.++.|+++|..||.=+ .+|.-+--+.-..++...+.+.+.-.-.|-. +.||=..+..+.+..+..+...+
T Consensus 178 ~~~~d~~v~~lkDql~~AkaY~--~iak~~~~~~l~~el~~~i~e~~r~l~~a~~--d~~lp~~~~~~~~~m~~~i~~ak 253 (639)
T PLN02829 178 TVMPDARVRQLRDQLIKAKVYL--SLPATKANPHFTRELRLRIKEVQRVLGDASK--DSDLPKNANEKLKAMEQTLAKGK 253 (639)
T ss_pred ccCchHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHhhccC--CCCCChhHHHHHHHHHHHHHHHH
Confidence 3678899999999999999764 6666666666677777777777555544444 67788888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (292)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k 210 (292)
...-.....+.+|+.-+..+|.++.-.+.+
T Consensus 254 ~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q 283 (639)
T PLN02829 254 QMQDDCSIVVKKLRAMLHSAEEQLRVHKKQ 283 (639)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887778888888888888888777655443
No 187
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=70.95 E-value=55 Score=26.55 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (292)
Q Consensus 108 Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~ 187 (292)
+.=-+.....++..++.+.+.....+.++..+......+..........|-. ......+..-+..+...+..+.
T Consensus 8 l~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~------~~~l~~~~~f~~~l~~~i~~q~ 81 (141)
T TIGR02473 8 LDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTS------ALELSNYQRFIRQLDQRIQQQQ 81 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677888899999888999999999999999888877666666622 1112344555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 188 NVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 188 ~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
..+..++..+......+.+...++
T Consensus 82 ~~l~~~~~~~e~~r~~l~~a~~~~ 105 (141)
T TIGR02473 82 QELALLQQEVEAKRERLLEARREL 105 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555555554443
No 188
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.88 E-value=94 Score=29.22 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCC
Q 022758 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW----YRKAQLALQKGE 158 (292)
Q Consensus 100 Pe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~----e~rA~~AL~~G~ 158 (292)
-..-|+-.|.+....+...+..+.+.-+.-+.++.+++.+...|.++ .+||+.+-..|-
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~ 115 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGT 115 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556666777777777777888888888888888888877777654 568888877777
No 189
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=70.67 E-value=51 Score=27.96 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=31.1
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 022758 100 PEKILEQAVL-------EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (292)
Q Consensus 100 Pe~mLeQ~Ir-------emee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~E 159 (292)
-...+++++. .+++++.+....+..-...-+.++........+..+...++.--|+.++.
T Consensus 28 ~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~ 94 (160)
T PF13094_consen 28 RKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDS 94 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccccc
Confidence 3444555544 44444444444444444555555555555555555555555555555543
No 190
>PRK11281 hypothetical protein; Provisional
Probab=70.66 E-value=1.9e+02 Score=32.65 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~ 142 (292)
..|++.+.+.++++.+.+..++..-+.--.++.+.++++..
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ 164 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAA 164 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 55777777777777777777777655444444444444433
No 191
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=70.45 E-value=1.5e+02 Score=31.26 Aligned_cols=112 Identities=12% Similarity=0.151 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHH
Q 022758 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE--EDLAREALKRRKSYADNAN 177 (292)
Q Consensus 100 Pe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~--EdLAreAL~rk~~~e~~~~ 177 (292)
-..++.|.+++|.+++..++...-..+.....|++.+..+..++.......-- .|- .+.+. -.+...+...++
T Consensus 23 e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~p---a~pse~E~~L--q~E~~~L~kElE 97 (617)
T PF15070_consen 23 ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPP---AGPSEVEQQL--QAEAEHLRKELE 97 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccc---ccchHHHHHH--HHHHHHHHHHHH
Confidence 35678888888888888888877777777777777776666555543311111 111 11111 112233444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (292)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 216 (292)
.+..++..+-.....|..-....+.+|.++..+...+..
T Consensus 98 ~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e 136 (617)
T PF15070_consen 98 SLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQE 136 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444433344433334444455555444444433
No 192
>PLN02742 Probable galacturonosyltransferase
Probab=70.41 E-value=47 Score=34.18 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 184 (292)
Q Consensus 105 eQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~ 184 (292)
|-.++.|.++|.-||.=+ .+|..+--..-..++...+.+.+.-.-.|...++.=.-..+..+.+..+..+..-+...-
T Consensus 73 ~~~~~~l~dql~~Ak~y~--~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~~~~ 150 (534)
T PLN02742 73 TSFSRQLADQITLAKAYV--VIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQDLHY 150 (534)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHhccc
Confidence 556778999999998875 667666666666677777777766655555444321136777777777777777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 185 QQKNVVNNLVSNTRLLESKIQEARSK 210 (292)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~Ki~e~k~k 210 (292)
.....+.+|+.-+..+|.++.-.+.+
T Consensus 151 d~~~~~~klr~~l~~~e~~~~~~~~q 176 (534)
T PLN02742 151 DSATTIMTLKAHIQALEERANAATVQ 176 (534)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777766655433
No 193
>PRK02793 phi X174 lysis protein; Provisional
Probab=69.85 E-value=42 Score=25.10 Aligned_cols=46 Identities=9% Similarity=0.048 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 213 (292)
|..++|.++.=.+..++.+...+......+..|+.++..+..+...
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555555555555555555555444444
No 194
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=69.21 E-value=90 Score=28.32 Aligned_cols=37 Identities=22% Similarity=0.110 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhHHHHHHHhhccCCCcHHHHHhcccC
Q 022758 241 SAFEKMEEKVLTMESQADSLNQLTTDDLEGKVAFTSF 277 (292)
Q Consensus 241 ~~feR~eeki~~~EA~AeA~~eL~~~~Le~~fa~Le~ 277 (292)
...+...+......+.++.+..-...-++.++.+++.
T Consensus 168 ~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~l~e~e~ 204 (212)
T COG3599 168 AANEEAERLADAAQADADRLRDECDIYVDTKLAELET 204 (212)
T ss_pred HHHHHHhhcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 3344444444444444444432222345555555443
No 195
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.15 E-value=84 Score=27.98 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 180 KAQLDQQKNVVNNLVSNTRLLESKIQ 205 (292)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~Ki~ 205 (292)
..-...+...+..|...+..|..+|.
T Consensus 163 ~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 163 KKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 196
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=69.02 E-value=1.7e+02 Score=31.33 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (292)
Q Consensus 103 mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (292)
-..|.+.-+.+....+...+.+..+....+...+..++.+...++..
T Consensus 493 ~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~ 539 (698)
T KOG0978|consen 493 KANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSN 539 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 34555666666666666666666666666666655555555544443
No 197
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=68.85 E-value=1.6e+02 Score=31.20 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022758 130 KRLENKCKAAEQASEDWYRKAQ 151 (292)
Q Consensus 130 k~le~kl~~~~~~~~~~e~rA~ 151 (292)
.-++.++..++.++...+.+..
T Consensus 270 ~fL~~qL~~l~~~L~~aE~~l~ 291 (726)
T PRK09841 270 EFLQRQLPEVRSELDQAEEKLN 291 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 198
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=68.76 E-value=96 Score=28.49 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHhcccC--CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSSFE--DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~E--DPe-~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~ 145 (292)
||+++.+.|.+- --+++ ||- .--.++|.+++.+|.++-.++-.++..++.+-.-+.+.-.-+..
T Consensus 2 ~~~~~~d~~~~~----~~k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~ 68 (234)
T cd07665 2 MFNKATDAVSKM----TIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAM 68 (234)
T ss_pred hhhHHHHHHhcc----ccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777766553 33444 452 55678999999999999999999999888887777766554443
No 199
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=68.74 E-value=1.3e+02 Score=32.37 Aligned_cols=7 Identities=0% Similarity=0.297 Sum_probs=2.7
Q ss_pred hHHHHHH
Q 022758 78 LFDRLAR 84 (292)
Q Consensus 78 if~Rl~~ 84 (292)
|..|-..
T Consensus 498 ii~~A~~ 504 (771)
T TIGR01069 498 IIEQAKT 504 (771)
T ss_pred HHHHHHH
Confidence 3444333
No 200
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=68.39 E-value=1.5e+02 Score=30.67 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022758 103 ILEQAVLEMNDDLVKMRQATAQ 124 (292)
Q Consensus 103 mLeQ~Iremee~l~kar~alA~ 124 (292)
.|+....+|+..+.+++..+..
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~~ 182 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELEQ 182 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 201
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=67.97 E-value=1.5e+02 Score=30.35 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
..+...+..++.....+..|+..+..|+..|...+.....++.+.
T Consensus 288 ~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e 332 (522)
T PF05701_consen 288 KELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKERE 332 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444555555544444444443
No 202
>PRK04406 hypothetical protein; Provisional
Probab=67.75 E-value=48 Score=25.06 Aligned_cols=44 Identities=5% Similarity=0.044 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
|..++|.+++-.+..++.++..+......+..|+.++..+..+.
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444443333
No 203
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=67.73 E-value=1.3e+02 Score=29.79 Aligned_cols=28 Identities=11% Similarity=0.219 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 124 QVLASQKRLENKCKAAEQASEDWYRKAQ 151 (292)
Q Consensus 124 ~v~A~~k~le~kl~~~~~~~~~~e~rA~ 151 (292)
..-+....+..++..++.++..++....
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555556666555554444
No 204
>PRK10869 recombination and repair protein; Provisional
Probab=67.61 E-value=1.5e+02 Score=30.44 Aligned_cols=78 Identities=14% Similarity=0.042 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (292)
Q Consensus 106 Q~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~ 185 (292)
+.+++.=..+.++++.+......+....++++-++-++++++. ..++.|+++-=..-..+....+.-.+.+...++.
T Consensus 157 ~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~---~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~~~ 233 (553)
T PRK10869 157 QEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE---FAPQPGEFEQIDEEYKRLANSGQLLTTSQNALQL 233 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh---CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666777666777777777777777776664 3467888765555555555566665555555555
Q ss_pred H
Q 022758 186 Q 186 (292)
Q Consensus 186 ~ 186 (292)
+
T Consensus 234 L 234 (553)
T PRK10869 234 L 234 (553)
T ss_pred h
Confidence 4
No 205
>PRK15396 murein lipoprotein; Provisional
Probab=67.43 E-value=42 Score=25.69 Aligned_cols=13 Identities=8% Similarity=0.309 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 022758 218 AQSAKTATKVSEM 230 (292)
Q Consensus 218 ~~~AkAq~~i~~~ 230 (292)
.++++|.+++...
T Consensus 60 ~eA~raN~RlDn~ 72 (78)
T PRK15396 60 DDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555433
No 206
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=67.21 E-value=71 Score=26.36 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (292)
Q Consensus 105 eQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e 147 (292)
++.++++...+.+.+..+..+......++..+.++..-.+..+
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677777766666666666666666655554444
No 207
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=67.06 E-value=1.2e+02 Score=29.30 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhHHHHHHH
Q 022758 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN-TSSALSAFEKMEEKVLTMESQADS 259 (292)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~-~~~a~~~feR~eeki~~~EA~AeA 259 (292)
.-+.+...+...|...+..|+.++.+++-....|+.+....+....-...-.... -.+....||.+..++.+.+-...+
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555444433332211000000000 023456778888888777776665
Q ss_pred h
Q 022758 260 L 260 (292)
Q Consensus 260 ~ 260 (292)
+
T Consensus 152 ~ 152 (319)
T PF09789_consen 152 L 152 (319)
T ss_pred H
Confidence 4
No 208
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=67.04 E-value=2.3e+02 Score=32.23 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=5.8
Q ss_pred CCCCCCCCC
Q 022758 12 TMPMTPAPS 20 (292)
Q Consensus 12 ~~~~~~~~~ 20 (292)
.||.-|..|
T Consensus 353 ~pP~vPevs 361 (1317)
T KOG0612|consen 353 VPPVVPEVS 361 (1317)
T ss_pred CCCCCCcCC
Confidence 467777664
No 209
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=67.01 E-value=82 Score=27.03 Aligned_cols=99 Identities=13% Similarity=0.188 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (292)
Q Consensus 111 mee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v 190 (292)
.+....++...+..++......+.++..+...-.++..+...=+..|= ...+...|+..+..|+..++++...+
T Consensus 14 ~~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~------s~~q~~nyq~fI~~Le~~I~q~~~~~ 87 (148)
T COG2882 14 AKKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGV------SAAQWQNYQQFISQLEVAIDQQQSQL 87 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777788888888888888888888888888777676664 34455788889999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 191 NNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 191 ~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
..+...+.+......+.+.++..+.
T Consensus 88 ~~~~~~ve~~r~~w~ek~~~~k~~e 112 (148)
T COG2882 88 SKLRKQVEQKREIWQEKQIELKALE 112 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877777777666665443
No 210
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=66.98 E-value=1.2e+02 Score=28.81 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022758 107 AVLEMNDDLVKMRQATA 123 (292)
Q Consensus 107 ~Iremee~l~kar~alA 123 (292)
.+.+++.++..++..+.
T Consensus 87 ~l~~a~a~l~~a~a~l~ 103 (346)
T PRK10476 87 TVAQAQADLALADAQIM 103 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555444443
No 211
>PRK02119 hypothetical protein; Provisional
Probab=66.80 E-value=52 Score=24.68 Aligned_cols=44 Identities=7% Similarity=-0.007 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
|..++|.++.-.+..++.++..+..-...+..|+.++..+..+.
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444433
No 212
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=66.58 E-value=1.1e+02 Score=28.18 Aligned_cols=118 Identities=12% Similarity=0.248 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CHHHH------HHHHHHH--HHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG----EEDLA------REALKRR--KSYADNAN 177 (292)
Q Consensus 110 emee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G----~EdLA------reAL~rk--~~~e~~~~ 177 (292)
.+-....++...+-......+.+...+......|...-.++..-=..| ..+|. ..-|.+. .++..+..
T Consensus 70 ~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~ 149 (264)
T PF06008_consen 70 KVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQ 149 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 333344444444555555555555555555555555555554321101 12222 2222221 12333333
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 178 ALKAQLDQQKNVVNNLVSNT-----------RLLESKIQEARSKKDTLKARAQSAKTATKV 227 (292)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l-----------~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i 227 (292)
..+.++..++.-+...+..+ ..+...+.++..|+..|..-.+-|....+-
T Consensus 150 ~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~e 210 (264)
T PF06008_consen 150 NAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTRE 210 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333332 344556666666666666665555554433
No 213
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=66.55 E-value=65 Score=25.70 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR---KAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 184 (292)
Q Consensus 108 Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~---rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~ 184 (292)
+.+.-..+...+..+..+......++.++.+...-...++. .+.-=---|. .+.+ .+..+-...++..++
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~------vlv~-~~~~e~~~~l~~r~e 77 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGN------LLVK-TDKEEAIQELKEKKE 77 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhch------hhhe-ecHHHHHHHHHHHHH
Confidence 34455556666666666666677777777766655554443 1111111222 2222 334555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 185 QQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
..+..+..|..++..++.++.+++.+...+
T Consensus 78 ~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 78 TLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666555443
No 214
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=66.26 E-value=1.9e+02 Score=31.07 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVS 228 (292)
Q Consensus 161 LAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~ 228 (292)
-=..++.+.....+..+.|..+++....+++.+...-.+|..-++.++.+.+.|.. ..+.-.+.++
T Consensus 203 rlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~--~~~~~~~~mr 268 (916)
T KOG0249|consen 203 RLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR--SSLEKEQELR 268 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHhhhhhhc
Confidence 33456777788888999999999999999999999999999999999999999993 4444444444
No 215
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=66.25 E-value=70 Score=25.99 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 167 ~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
..+..+...+..|+++.+.....+..|..++..+...++..|..+..|..|
T Consensus 37 kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r 87 (107)
T PF09304_consen 37 KQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESR 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666666666665555555555544444443
No 216
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=65.99 E-value=2e+02 Score=31.07 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~ 143 (292)
++..|.+++++..+++.....+......++....+++.+.
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~ 552 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEM 552 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333333333333333333333333333
No 217
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=65.89 E-value=1e+02 Score=27.66 Aligned_cols=115 Identities=14% Similarity=0.186 Sum_probs=83.7
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 022758 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK 167 (292)
Q Consensus 88 a~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~ 167 (292)
+.+...++.+||--.-|-..|.++..++....+++- ..+.++..++++...+..+++.....+.. ++..=.
T Consensus 25 ~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~----~aK~l~eEledLk~~~~~lEE~~~~L~aq-----~rqlEk 95 (193)
T PF14662_consen 25 AKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQ----KAKALEEELEDLKTLAKSLEEENRSLLAQ-----ARQLEK 95 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 345666777777777777777777777776654444 45667777888888888887777665543 345556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
+..++...++.|+..-.......+.++....+|-.+...++.+.
T Consensus 96 E~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 96 EQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 66777788888888888888888888888888877777777777
No 218
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=65.86 E-value=70 Score=25.81 Aligned_cols=31 Identities=10% Similarity=0.201 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRL 199 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~ 199 (292)
+..++.++..+..+++..+..+..+...+..
T Consensus 88 ~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 88 IEFLKKRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433333
No 219
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=65.86 E-value=1.7e+02 Score=30.21 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHcCCHHHHHHHHH
Q 022758 122 TAQVLASQKRLENKCKAAE-QASEDWYRKA---QLALQKGEEDLAREALK 167 (292)
Q Consensus 122 lA~v~A~~k~le~kl~~~~-~~~~~~e~rA---~~AL~~G~EdLAreAL~ 167 (292)
..+....-.....+++++. ....+.+... ..++...+=--|+..+.
T Consensus 55 ~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~ 104 (560)
T PF06160_consen 55 TGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIK 104 (560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4555555666666666655 3344444443 55566666555555543
No 220
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=65.83 E-value=1.3e+02 Score=28.89 Aligned_cols=105 Identities=14% Similarity=0.232 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ 181 (292)
..|..-++.++++-...|.............+.+-..+ +.++-++-. .|=.+...+.+.++.-..
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~------------~An~qia~LseELa~k~E 227 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL---VLDCVKQLS------------EANQQIASLSEELARKTE 227 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhh------------hcchhHHHHHHHHHHHHH
Confidence 78888899999988888888887776666555553333 333332221 122233344444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (292)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 221 (292)
....+++.|..|...+..++.+++.+-.+-+.|......+
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5556666666777777777777777666666666665554
No 221
>PRK00736 hypothetical protein; Provisional
Probab=65.48 E-value=53 Score=24.27 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (292)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e 206 (292)
..++.++.|-..+.++..+++.|...++.|..++.+
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555444
No 222
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=65.45 E-value=1.2e+02 Score=28.34 Aligned_cols=16 Identities=19% Similarity=-0.110 Sum_probs=7.5
Q ss_pred ccccCccceeeeeccc
Q 022758 40 SFFNGGVGALKVTRLR 55 (292)
Q Consensus 40 ~~~~~~~~~~~~~~~~ 55 (292)
++|+|-+..+-|.--.
T Consensus 21 ~~~~G~V~~i~V~eG~ 36 (327)
T TIGR02971 21 SGGTDRIKKLLVAEGD 36 (327)
T ss_pred CCCCcEEEEEEccCCC
Confidence 3444445555554333
No 223
>PRK11020 hypothetical protein; Provisional
Probab=65.44 E-value=65 Score=26.50 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (292)
Q Consensus 132 le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (292)
+..++..+....+....+--.|...||.++..+...++..++.+++.++.+.
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~ 54 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQ 54 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888899999999888877777766666666665543
No 224
>PRK04325 hypothetical protein; Provisional
Probab=65.26 E-value=56 Score=24.52 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e 206 (292)
.++.++.|-..+.+++.+++.|+..++.|..++.+
T Consensus 21 QE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 21 QEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555444444444444
No 225
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=65.10 E-value=30 Score=24.77 Aligned_cols=36 Identities=6% Similarity=0.231 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (292)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~ 205 (292)
.++|..+..++..+..++.+.+.++..+..++.-+.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666555555555555555555543
No 226
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=64.98 E-value=1.4e+02 Score=29.12 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=8.5
Q ss_pred CHH---HHHHHHHHHHHHHHH
Q 022758 99 DPE---KILEQAVLEMNDDLV 116 (292)
Q Consensus 99 DPe---~mLeQ~Iremee~l~ 116 (292)
||+ .+++-.+....+...
T Consensus 142 dp~~A~~i~n~~~~~y~~~~~ 162 (444)
T TIGR03017 142 DPRFAATVANAFAQAYIDTNI 162 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 673 555544444444333
No 227
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=64.94 E-value=89 Score=26.73 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=24.6
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (292)
Q Consensus 99 DP-e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA 150 (292)
.| ..+|+.=-....+++..+...-.++.......+.++..++.++.+.-.+|
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A 85 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAA 85 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 35555555555555555555544444444444444444444444433333
No 228
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=64.77 E-value=93 Score=26.87 Aligned_cols=78 Identities=10% Similarity=0.211 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA-LKAQLDQQKN 188 (292)
Q Consensus 110 emee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~-l~~ql~~~~~ 188 (292)
...+++..+...-..+-......+.++..++.++......+ ++.++.+++.+++..++.+.. +.+.+.....
T Consensus 45 ~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~-------~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~ 117 (155)
T PRK06569 45 NIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEK-------IDSLESEFLIKKKNLEQDLKNSINQNIEDINL 117 (155)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555444444444444555555554444444333 344555555555555554332 2333333444
Q ss_pred HHHHHH
Q 022758 189 VVNNLV 194 (292)
Q Consensus 189 ~v~~Lk 194 (292)
.+++++
T Consensus 118 ~~~~~~ 123 (155)
T PRK06569 118 AAKQFR 123 (155)
T ss_pred HHHHHH
Confidence 444333
No 229
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.76 E-value=1.2e+02 Score=28.09 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=49.1
Q ss_pred chHHHHHHHHHHHHHHHhc-ccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 77 NLFDRLARVVKSYANAILS-SFEDPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (292)
Q Consensus 77 ~if~Rl~~lira~~n~~ld-~~EDPe-~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~ 146 (292)
|+++++++.+++-++.+-- +--|++ .-+..++..+++.|..+.+-++++.-....+...+.+...-...|
T Consensus 30 g~~~~~~d~~~~~~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lw 101 (243)
T cd07666 30 GLLSRMGQTVKAVASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLW 101 (243)
T ss_pred hhhhhhHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5778888888877777411 333444 667778888888888888888888777766666666666555555
No 230
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=64.68 E-value=1.6e+02 Score=30.85 Aligned_cols=28 Identities=7% Similarity=0.099 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 125 VLASQKRLENKCKAAEQASEDWYRKAQL 152 (292)
Q Consensus 125 v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (292)
+|..-.....++-.++.++..+..+...
T Consensus 240 im~eLe~aq~ri~~lE~e~e~L~~ql~~ 267 (629)
T KOG0963|consen 240 IMTELEDAQQRIVFLEREVEQLREQLAK 267 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444433
No 231
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=64.34 E-value=1.8e+02 Score=29.92 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (292)
+.+.+++....+.++++.+.+....+...+++++.++.++++.+. ..++.|+++-=..-..+....+...+.+...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~---~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~~ 235 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE---ADLQPGEDEALEAEQQRLSNLEKLRELSQNAL 235 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh---CCcCCCcHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 444455555566666666666666666666666666666666553 23566776544444444444555444444444
Q ss_pred HHH
Q 022758 184 DQQ 186 (292)
Q Consensus 184 ~~~ 186 (292)
..+
T Consensus 236 ~~L 238 (563)
T TIGR00634 236 AAL 238 (563)
T ss_pred HHH
Confidence 433
No 232
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=64.28 E-value=45 Score=35.04 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~ 180 (292)
+.|-|-.++.|+++|.-||.= -.+|..+--..-..++...+.+.+.-.-.|. .+.||=..++.+.+..+..+...+
T Consensus 192 ~~~~d~~vk~lkDQl~~AkaY--~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~--~d~dlp~~~~~k~~~M~~~l~~ak 267 (657)
T PLN02910 192 SPNSDSILKLMRDQIIMAKAY--ANIAKSNNVTNLYVSLMKQFRENKRAIGEAT--SDAELHSSALDQAKAMGHVLSIAK 267 (657)
T ss_pred ccCcHHHHHHHHHHHHHHHHH--HHHhccCCcHHHHHHHHHHHHHHHHHHhhcc--cccccCchHHHHHHHHHHHHHHHH
Confidence 467788888999999888875 3444444444455555666665555444433 677788888888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (292)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k 210 (292)
...-.....+.+|+.-+..+|.++.-.+.+
T Consensus 268 ~~~~d~~~~~~KLraml~~~Ee~~~~~k~q 297 (657)
T PLN02910 268 DQLYDCHTMARKLRAMLQSTERKVDALKKK 297 (657)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888888887777776655443
No 233
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=64.16 E-value=63 Score=24.73 Aligned_cols=88 Identities=17% Similarity=0.293 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 117 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (292)
Q Consensus 117 kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~ 196 (292)
+++..++.+.......+.++..+......+........ .|- .......+..-+..+...+..+...+..++..
T Consensus 2 ~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~~~------s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 74 (123)
T PF02050_consen 2 QAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-QGV------SVAQLRNYQRYISALEQAIQQQQQELERLEQE 74 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888888866665544 332 22333344555556666666666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 022758 197 TRLLESKIQEARSKK 211 (292)
Q Consensus 197 l~~Le~Ki~e~k~k~ 211 (292)
+......+.+...+.
T Consensus 75 ~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 75 VEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 655555555554444
No 234
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=63.62 E-value=32 Score=31.91 Aligned_cols=41 Identities=5% Similarity=0.087 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 213 (292)
..+++.++.++..++.+++.+..++.+++.+-.++-..++.
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443
No 235
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=63.58 E-value=1.5e+02 Score=28.69 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022758 100 PEKILEQAVLEMNDDLVKMRQATAQV----LASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (292)
Q Consensus 100 Pe~mLeQ~Iremee~l~kar~alA~v----~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 174 (292)
-...|...|.|....+.+++.-++.. +.....-+.++..+...|.+.-++|...-..|+-+-|..++.+...+..
T Consensus 84 ~~~~l~~~v~d~~rri~~~kerL~e~~ee~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~ 162 (319)
T KOG0796|consen 84 ALEILERFVADVDRRIEKAKERLAETVEERSEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKA 162 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 45677777777777777777766665 2222223678889999999999999999999999988888776554443
No 236
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=63.57 E-value=1.1e+02 Score=27.25 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~ 180 (292)
...|++.|+|.+.-+.+...+|...-.+-.-..+-.......+..+..-...+ ... ....+..+..-+
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a----~~n--------l~~a~~~a~~AQ 136 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAA----QAN--------LANAEQVAEGAQ 136 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--------HHHHHHHHHHHH
Confidence 35566666666666666666666665555555555555544444443333222 111 112223333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
.++.....-++..+..+..|..++...+...+..+
T Consensus 137 ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 137 QELAEKTQLLEAAKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444433
No 237
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=63.42 E-value=1.2e+02 Score=27.82 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=10.3
Q ss_pred CchHHHHHHHHHHHHHH
Q 022758 76 MNLFDRLARVVKSYANA 92 (292)
Q Consensus 76 M~if~Rl~~lira~~n~ 92 (292)
.|-|..-|+.+...+..
T Consensus 59 ~gsl~~aw~~~~~e~e~ 75 (258)
T cd07655 59 YGTLETAWKGLLSEAER 75 (258)
T ss_pred CChHHHHHHHHHHHHHH
Confidence 45566666666666555
No 238
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=63.28 E-value=1e+02 Score=26.75 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 184 (292)
Q Consensus 105 eQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~ 184 (292)
.+..+.+++.|...+..+....+....-..+.......+.....+...-...|.-=. +.....+..-...+...+.
T Consensus 14 ~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~----i~~~~~~~~~r~~l~~~~~ 89 (158)
T PF09486_consen 14 RRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFS----IDEYLALRRYRDVLEERVR 89 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcc----HHHHHHHHHHHHHHHHHHH
Confidence 455567777888888888877777777777777777777777777666555444222 3444455555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 185 QQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (292)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 213 (292)
.++.++..+...+.....+|..+.+.+..
T Consensus 90 ~~e~~~a~l~~~l~~~~~~ia~~~raIar 118 (158)
T PF09486_consen 90 AAEAELAALRQALRAAEDEIAATRRAIAR 118 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555555555444433
No 239
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=63.18 E-value=1.2e+02 Score=27.44 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 160 DLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (292)
Q Consensus 160 dLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 213 (292)
+-|..+..+...++.....+...+..+....+++.......+.+|..+-.|+..
T Consensus 102 eraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkE 155 (205)
T KOG1003|consen 102 ERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKE 155 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 334444444445555555555555555555555555444444444444444433
No 240
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=63.17 E-value=1.6e+02 Score=29.03 Aligned_cols=94 Identities=19% Similarity=0.226 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 022758 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (292)
Q Consensus 98 EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (292)
+.|..+|+-++.....-...+-..++.+ +++-.+-+..+ -++++..|+-|- .||+ |--. ++...+
T Consensus 85 ~spl~iL~~mM~qcKnmQe~~~s~LaAa---E~khrKli~dL---E~dRe~haqdaa-eGDD-lt~~-------LEKERe 149 (561)
T KOG1103|consen 85 ESPLDILDKMMAQCKNMQENAASLLAAA---EKKHRKLIKDL---EADREAHAQDAA-EGDD-LTAH-------LEKERE 149 (561)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHhhhhh-ccch-HHHH-------HHHHHH
Confidence 4577888877776666555554444433 22222222222 344555666543 3544 3322 344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (292)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e 206 (292)
.|++|++=...++.+.+-.-.+|+..+.+
T Consensus 150 qL~QQiEFe~~e~kK~E~~k~Kl~~qLee 178 (561)
T KOG1103|consen 150 QLQQQIEFEIEEKKKAEIAKDKLEMQLEE 178 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444444444444444444433
No 241
>PTZ00464 SNF-7-like protein; Provisional
Probab=63.01 E-value=1.2e+02 Score=27.46 Aligned_cols=10 Identities=20% Similarity=0.697 Sum_probs=6.2
Q ss_pred HHHHHHHhcC
Q 022758 224 ATKVSEMLGN 233 (292)
Q Consensus 224 q~~i~~~~~~ 233 (292)
+..|++++++
T Consensus 140 ~~EI~e~Ls~ 149 (211)
T PTZ00464 140 TQEIQEIMGR 149 (211)
T ss_pred HHHHHHHHhC
Confidence 4457777764
No 242
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=62.93 E-value=75 Score=26.93 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 163 reAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
-.++.++..++.++.....+++.++..+.+....+......|++++.....+...
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e 77 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERE 77 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665555555555555555555555555555555444444433
No 243
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=62.88 E-value=1.4e+02 Score=28.38 Aligned_cols=67 Identities=24% Similarity=0.307 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 022758 177 NALKAQLDQQKNVVNNLVSNT-------RLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEK 249 (292)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l-------~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~a~~~feR~eek 249 (292)
..+...++.++.++.+++.-+ ++|.-=.+|+.++-++|-.+...+.-...+- .....+|.|+|+
T Consensus 215 ~DI~EEldRL~sHv~~~~~iL~~~g~vGRkLDFl~QE~nREaNTl~SKS~~~~it~~~v---------ElK~~IEqmREQ 285 (290)
T COG1561 215 ADIAEELDRLKSHVKEFRNILEKGGPVGRKLDFLMQEFNREANTLGSKSNAAEITAAVV---------ELKVLIEQMREQ 285 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhHHHHhhhhccchHHHHHHHH---------HHHHHHHHHHHH
Confidence 344444555555555555555 4677778899999998888877665443221 124578888888
Q ss_pred HHh
Q 022758 250 VLT 252 (292)
Q Consensus 250 i~~ 252 (292)
|.-
T Consensus 286 VQN 288 (290)
T COG1561 286 VQN 288 (290)
T ss_pred Hhc
Confidence 754
No 244
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=62.72 E-value=52 Score=28.12 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (292)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 220 (292)
.++++-++.|+..++.+.....++...+.+|..++..+..+...+..+...
T Consensus 90 ~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 90 KSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777777777777777776666555443
No 245
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=62.68 E-value=1.3e+02 Score=27.96 Aligned_cols=20 Identities=20% Similarity=0.079 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022758 130 KRLENKCKAAEQASEDWYRK 149 (292)
Q Consensus 130 k~le~kl~~~~~~~~~~e~r 149 (292)
..++.+++.++..+...+.+
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~ 95 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQ 95 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544433
No 246
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=62.61 E-value=1.1e+02 Score=26.99 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=53.5
Q ss_pred CchHHHHHHHHHHHHHHHhcccC--CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 76 MNLFDRLARVVKSYANAILSSFE--DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (292)
Q Consensus 76 M~if~Rl~~lira~~n~~ld~~E--DPe-~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e 147 (292)
.|+|+.+...+... .-++. ||. .-..+++..++.+|..+...+-.++...+.+-.-+.++-.....|-
T Consensus 2 ~~~~~~~~~s~~~~----~~~~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la 72 (236)
T PF09325_consen 2 KGLFGKLFDSVSNS----SPKMKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLA 72 (236)
T ss_pred hhHHHHHHHHHHcc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788888777665 33444 553 7778999999999999999999999998888888888777776664
No 247
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.38 E-value=1.3e+02 Score=27.64 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 113 DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNN 192 (292)
Q Consensus 113 e~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~ 192 (292)
.++.+.+..|-..+...+..+.-+.++..+++.+ +.++..+.+.+..+.+.+..++..+.+
T Consensus 11 ~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L-------------------~~Er~~h~eeLrqI~~DIn~lE~iIkq 71 (230)
T PF10146_consen 11 LELEKLKNEILQEVESLENEEKCLEEYRKEMEEL-------------------LQERMAHVEELRQINQDINTLENIIKQ 71 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555555544433 344444555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022758 193 LVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 193 Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
++....+.+..+..+..+..-|+
T Consensus 72 a~~er~~~~~~i~r~~eey~~Lk 94 (230)
T PF10146_consen 72 AESERNKRQEKIQRLYEEYKPLK 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444444444444333333
No 248
>PRK00846 hypothetical protein; Provisional
Probab=62.19 E-value=69 Score=24.48 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k 208 (292)
.++.++.|-..+..+...++.|+..++.|..++.++.
T Consensus 25 Qe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 25 QEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555555555555555555555443
No 249
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=62.02 E-value=2.6 Score=44.54 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHH
Q 022758 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE-DLAREALKRRKSYADNANALKA 181 (292)
Q Consensus 103 mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~E-dLAreAL~rk~~~e~~~~~l~~ 181 (292)
.+...++.+++++.+..............++..+..++.+..+|...|..|-.--|| |..|+-..+...++..++.|++
T Consensus 243 ~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKk 322 (713)
T PF05622_consen 243 DLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKK 322 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666677888888999999999999988776666 8888888888888888888877
Q ss_pred HHHH---HHHHHHHHHH
Q 022758 182 QLDQ---QKNVVNNLVS 195 (292)
Q Consensus 182 ql~~---~~~~v~~Lk~ 195 (292)
-++. ++.++..|++
T Consensus 323 KLed~~~lk~qvk~Lee 339 (713)
T PF05622_consen 323 KLEDLEDLKRQVKELEE 339 (713)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 6655 3344444443
No 250
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=61.98 E-value=76 Score=24.89 Aligned_cols=34 Identities=6% Similarity=0.155 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022758 124 QVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (292)
Q Consensus 124 ~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (292)
..-..++.+..+++.++.+-.....+...+...|
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~ 66 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEIGKLKKAG 66 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc
Confidence 3344456666677777777777777777777776
No 251
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.67 E-value=39 Score=23.04 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (292)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e 206 (292)
.....|+..++.+....+.|......|...+..
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333333333333
No 252
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=61.64 E-value=88 Score=25.56 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
++.|-.+...++...+..+...+..|.++...-+. +.+..-+.|+.+.+.++
T Consensus 61 d~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~~~KL~ea~~eL 112 (115)
T PF06476_consen 61 DEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKRQKKLAEAKAEL 112 (115)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666666665555444 45555555555555444
No 253
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=61.45 E-value=2.4e+02 Score=30.48 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKC 136 (292)
Q Consensus 100 Pe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl 136 (292)
|..+++.+-.-+.++-.++..-+...-..++.++.+.
T Consensus 500 p~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~ 536 (782)
T PRK00409 500 PENIIEEAKKLIGEDKEKLNELIASLEELERELEQKA 536 (782)
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333333333333333333333333333333
No 254
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=61.38 E-value=1e+02 Score=26.19 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNL--VSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~L--k~~l~~Le~Ki~e~k~k~~~L 214 (292)
++-.|...+..++..+...-...-++ -.++.++..++.++..+++.+
T Consensus 95 kk~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~~kl~~i 143 (147)
T PF05659_consen 95 KKPRYARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMNTKLDDI 143 (147)
T ss_pred hhHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777778777777655432222 235556666666666665544
No 255
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=61.00 E-value=3.5e+02 Score=32.22 Aligned_cols=117 Identities=16% Similarity=0.234 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------HHH---HHHHHHHHHHHHHHHH
Q 022758 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE-------EDL---AREALKRRKSYADNAN 177 (292)
Q Consensus 108 Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~-------EdL---AreAL~rk~~~e~~~~ 177 (292)
|..++.++.-.+..+...-+.-......+.-++.+...|..|...-+.+-. +-| +...=.++..-+..++
T Consensus 1252 i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~ 1331 (1822)
T KOG4674|consen 1252 IEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIA 1331 (1822)
T ss_pred HHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555666778888889988888777622 111 1111122222333333
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 178 ALKAQLDQQK----NVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (292)
Q Consensus 178 ~l~~ql~~~~----~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq 224 (292)
.+...+...+ .+++.++...+.+..++.+++.....|.+.+.-..++
T Consensus 1332 el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1332 ELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 5555555556666666666666666666555444443
No 256
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=60.77 E-value=49 Score=30.71 Aligned_cols=41 Identities=10% Similarity=0.236 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
-.+..++++++..|.+|+..++++..++++++.+...+-..
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777777666655544
No 257
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.74 E-value=2e+02 Score=29.27 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=0.0
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 022758 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYA 173 (292)
Q Consensus 94 ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e 173 (292)
++.++||..-. .+.......--.+++.+-....+++-...+++ ...++..++..+|.-|..-||+.- .......
T Consensus 233 ~eel~eq~een----eel~ae~kqh~v~~~ales~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~-~~l~~~~ 306 (521)
T KOG1937|consen 233 VEELTEQNEEN----EELQAEYKQHLVEYKALESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLM-GKLAELN 306 (521)
T ss_pred HHHHHhhhhhH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHH-HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------H-HHHHHHHHHHHHHHHHHHH
Q 022758 174 DNANALKAQLDQQKNVVNNLVSNTRLL---------E-SKIQEARSKKDTLKARAQS 220 (292)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~L---------e-~Ki~e~k~k~~~LkAr~~~ 220 (292)
.++..+.+||+........=+..++.. + ++|+++......+-.+.+.
T Consensus 307 ~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~ 363 (521)
T KOG1937|consen 307 KQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIES 363 (521)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
No 258
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=60.54 E-value=1.4e+02 Score=27.50 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHH-HHHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSSFEDPE-KILEQAVLEM 111 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~EDPe-~mLeQ~Irem 111 (292)
...||..+-......+-..+-+|. ..|+..|.++
T Consensus 89 a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i 123 (244)
T cd07595 89 AQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNI 123 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666773 4555444443
No 259
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=60.49 E-value=96 Score=25.60 Aligned_cols=11 Identities=27% Similarity=0.450 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 022758 111 MNDDLVKMRQA 121 (292)
Q Consensus 111 mee~l~kar~a 121 (292)
....+..+...
T Consensus 31 I~~~l~~A~~~ 41 (147)
T TIGR01144 31 IADGLASAERA 41 (147)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 260
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=60.40 E-value=42 Score=32.29 Aligned_cols=75 Identities=16% Similarity=0.302 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHH
Q 022758 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTAT-KVSEMLGNVNTSSALSAFEKMEEKVLTMESQAD 258 (292)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~-~i~~~~~~~~~~~a~~~feR~eeki~~~EA~Ae 258 (292)
+..+...+..+..+...+..|+.++++...++..|.......+... .....++++ .+.-.|+.+.+...+....
T Consensus 234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L-----~~E~~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGL-----SGEKERWSEQIEELEEQLK 308 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----HHHHHCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhh-----cchhhhHHHHHHHHHHHhc
Confidence 3333344444444444444444444444444444444433322211 112233343 2355566666655555544
Q ss_pred H
Q 022758 259 S 259 (292)
Q Consensus 259 A 259 (292)
.
T Consensus 309 ~ 309 (344)
T PF12777_consen 309 N 309 (344)
T ss_dssp H
T ss_pred c
Confidence 3
No 261
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=60.39 E-value=1.8e+02 Score=28.83 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhHHHH
Q 022758 242 AFEKMEEKVLTMESQ 256 (292)
Q Consensus 242 ~feR~eeki~~~EA~ 256 (292)
.++..+.++...++.
T Consensus 292 ~l~~~~~~l~~~~~~ 306 (457)
T TIGR01000 292 EITDLNQKLLELESK 306 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444333333
No 262
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=60.30 E-value=2.2e+02 Score=30.09 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
+.+..++..+..++..+..+..++..|+..++++
T Consensus 378 ~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l 411 (656)
T PRK06975 378 ASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDL 411 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444443333
No 263
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=60.27 E-value=1.5e+02 Score=27.62 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 175 NANALKAQLDQQKNVVNNLVSNTRLLE 201 (292)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le 201 (292)
.+..+..+++.+......|+..+..++
T Consensus 224 ~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 224 QIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhhccccchhhhhhhHHHHH
Confidence 333333333333333333333333333
No 264
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=59.82 E-value=1.5e+02 Score=27.61 Aligned_cols=12 Identities=8% Similarity=0.255 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQA 121 (292)
Q Consensus 110 emee~l~kar~a 121 (292)
.++.++..++..
T Consensus 84 ~a~a~l~~~~~~ 95 (334)
T TIGR00998 84 KAEANLAALVRQ 95 (334)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 265
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=59.64 E-value=1.4e+02 Score=27.37 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
+..+..+......-......|+..+...+......+.++
T Consensus 88 ~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 88 EAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444333
No 266
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=59.56 E-value=1.5e+02 Score=27.68 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHH
Q 022758 99 DPEKILEQAVLE 110 (292)
Q Consensus 99 DPe~mLeQ~Ire 110 (292)
-...+|.+++..
T Consensus 173 ka~evL~~fl~~ 184 (297)
T PF02841_consen 173 KAEEVLQEFLQS 184 (297)
T ss_dssp THHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 345677777666
No 267
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=59.37 E-value=1.8e+02 Score=28.40 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 022758 139 AEQASEDWYRKAQLA 153 (292)
Q Consensus 139 ~~~~~~~~e~rA~~A 153 (292)
+.....+|.++..++
T Consensus 129 l~~a~~~~~R~~~L~ 143 (352)
T COG1566 129 LDQAQNELERRAELA 143 (352)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455566665554
No 268
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=59.20 E-value=1.2e+02 Score=28.08 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
..-+.-+..|.|..+....+|+..++++...+..++++.+.|++-
T Consensus 78 ~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 78 SSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777777777777777777777655
No 269
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=59.15 E-value=1.8e+02 Score=28.40 Aligned_cols=103 Identities=10% Similarity=0.137 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (292)
....|..|..........+-.+...-.++...+...-.++..++...-. .=+.| +.+-....+++...+..+
T Consensus 218 WR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~----qle~l----~~eYr~~~~~ls~~~~~y 289 (359)
T PF10498_consen 218 WRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINN----QLEPL----IQEYRSAQDELSEVQEKY 289 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHH----HHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777777777777777777766543 33333 333455566777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
.+....|..+...|.++..++++.|.+.+.-
T Consensus 290 ~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 290 KQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888887777777777777654
No 270
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=58.66 E-value=2e+02 Score=28.60 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---HHHHHHHHHHHHHH
Q 022758 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKR---RKSYADNANALKAQ 182 (292)
Q Consensus 106 Q~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~r---k~~~e~~~~~l~~q 182 (292)
..|.++..++..++..++++...-.-..-+....+.++...+.+...- +.+-.-.. ...++.+.+.|...
T Consensus 285 ~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e-------~~~~~~~~~~~~~~l~~~~~~L~~~ 357 (458)
T COG3206 285 PTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAE-------LRQILASLPNELALLEQQEAALEKE 357 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHH-------HHHHHHhchhHHHHHHHHHHHHHHH
Confidence 345566666666655555555544444444444444444433333222 11111111 11133333344444
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 183 LDQQKNVVNN---LVSNTRLLESKIQEARSKKDTLKARAQSAKTAT 225 (292)
Q Consensus 183 l~~~~~~v~~---Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~ 225 (292)
+..++..+.. ....+.+|+.+++-.+.-.+++..|.+....+.
T Consensus 358 ~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 358 LAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333 334556667777777777777777776665554
No 271
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=58.09 E-value=2.8e+02 Score=30.23 Aligned_cols=89 Identities=24% Similarity=0.285 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 130 KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (292)
Q Consensus 130 k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~ 209 (292)
..+...+......+.++..+.. ++..--++|+..--....-.+.....++..++.++..+.........+...++....
T Consensus 318 ~~~~~~l~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~ 396 (908)
T COG0419 318 EELLEKLKSLEERLEKLEEKLE-KLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKE 396 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333344444444555555542 233333445444444444555555555555555555555444445555555555555
Q ss_pred HHHHHHHHHH
Q 022758 210 KKDTLKARAQ 219 (292)
Q Consensus 210 k~~~LkAr~~ 219 (292)
+...+.++..
T Consensus 397 ~~~~~~~~~~ 406 (908)
T COG0419 397 ELAELSAALE 406 (908)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 272
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=57.54 E-value=56 Score=33.16 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
++++++.++++++....+...++..+.+++..++.++.+.+.+.
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444444445555555555555555555555554333
No 273
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=57.49 E-value=76 Score=23.48 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (292)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq 224 (292)
..++..++++=....+|+..-..|..++..+..++..|+.+...|+..
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555666666666666677777777777666666544
No 274
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=57.34 E-value=1.4e+02 Score=26.40 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=4.7
Q ss_pred CCCCCCCCC
Q 022758 17 PAPSSSSSS 25 (292)
Q Consensus 17 ~~~~~~~~~ 25 (292)
.++|+.|+|
T Consensus 23 q~vS~~p~t 31 (189)
T PF10211_consen 23 QFVSSAPAT 31 (189)
T ss_pred eeeCCCCCC
Confidence 466555443
No 275
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.02 E-value=1.4e+02 Score=26.36 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q 022758 81 RLARVVKSYANA 92 (292)
Q Consensus 81 Rl~~lira~~n~ 92 (292)
-|++++.+=+++
T Consensus 31 ~VKdvlq~LvDD 42 (188)
T PF03962_consen 31 SVKDVLQSLVDD 42 (188)
T ss_pred hHHHHHHHHhcc
Confidence 356666666553
No 276
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=56.96 E-value=1.2e+02 Score=25.41 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (292)
Q Consensus 112 ee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~ 148 (292)
.+.+......+........+++.+++..+.++..++.
T Consensus 58 ~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~ 94 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQNDVERLKEQLEELERELASAEE 94 (151)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444433
No 277
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=56.86 E-value=1.3e+02 Score=25.79 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q 022758 80 DRLARVVKSYANAILSSFEDPEKILEQAVLEMNDD 114 (292)
Q Consensus 80 ~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~ 114 (292)
+|=+.+|-..+..+-++..+-..-+...|.++...
T Consensus 74 G~gF~vvA~eir~LA~~t~~~~~~I~~~i~~i~~~ 108 (213)
T PF00015_consen 74 GRGFAVVADEIRKLAEQTSESAKEISEIIEEIQEQ 108 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhh
Confidence 34444444444444444444333344444444444
No 278
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=56.72 E-value=1.8e+02 Score=27.71 Aligned_cols=101 Identities=24% Similarity=0.321 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 022758 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR--------AQSAKTATKVSEM 230 (292)
Q Consensus 159 EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr--------~~~AkAq~~i~~~ 230 (292)
+.|--.||.++..++.+++.|.+.-.+-+=+++.|+..+.+-+.|.++-+.+...|+-- .+.-++..++..-
T Consensus 10 eGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshd 89 (307)
T PF10481_consen 10 EGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHD 89 (307)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHH
Confidence 45667899999999999999999998888888999888888888888777776666632 2233444443322
Q ss_pred hc----CCC-----CCcHHHHHHHHHHHHHhHHHHHHH
Q 022758 231 LG----NVN-----TSSALSAFEKMEEKVLTMESQADS 259 (292)
Q Consensus 231 ~~----~~~-----~~~a~~~feR~eeki~~~EA~AeA 259 (292)
+. .++ ..++...+++++..+-+...+.+-
T Consensus 90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 90 LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 111 134556677777777666665553
No 279
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.42 E-value=2.7e+02 Score=29.57 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=47.4
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 022758 90 ANAILSSFEDPEKILEQAVLEMNDDLVKMR-QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (292)
Q Consensus 90 ~n~~ld~~EDPe~mLeQ~Iremee~l~kar-~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (292)
++.+.|.+-.|+.-.++.+.++++...++= +-+..+-..+.+|.+.+...++++..+....-....-|.
T Consensus 23 L~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~ 92 (660)
T KOG4302|consen 23 LQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE 92 (660)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 566667776776556666666666655543 345566667788899999999999888777666555555
No 280
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=56.41 E-value=1.5e+02 Score=26.49 Aligned_cols=54 Identities=9% Similarity=0.173 Sum_probs=29.7
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (292)
Q Consensus 99 DP-e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (292)
+| ..+|++-=....+.+.++.....++-......+.++..++.++.+.-+.|+.
T Consensus 71 kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~ 125 (205)
T PRK06231 71 KPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANY 125 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 3556655556666666666665555555555555555555555554444443
No 281
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=56.24 E-value=1.2e+02 Score=25.49 Aligned_cols=50 Identities=10% Similarity=0.186 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~ 151 (292)
.+|+.==.....++..+.....++-......+.++..++.++...-+.|+
T Consensus 32 ~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~ 81 (159)
T PRK13461 32 AVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYK 81 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555445555555555555444444444455555555554444444443
No 282
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.21 E-value=60 Score=22.13 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (292)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 216 (292)
++..++.+....+.|+.+...|....+.++.+...|..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555443
No 283
>PF15456 Uds1: Up-regulated During Septation
Probab=56.05 E-value=1.2e+02 Score=25.20 Aligned_cols=46 Identities=30% Similarity=0.426 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 161 LAREALKRRKSYA----DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 161 LAreAL~rk~~~e----~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
|...|+..-..|+ +.++.+++++..+...++.++.++. ++.|+.++
T Consensus 5 L~~tAl~ds~~feiLs~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdA 54 (124)
T PF15456_consen 5 LTETALGDSKEFEILSFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDA 54 (124)
T ss_pred HHHHHHHHHHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4445555444443 4555555555555555555555555 55555444
No 284
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=55.73 E-value=58 Score=26.07 Aligned_cols=106 Identities=18% Similarity=0.305 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~EDPe---~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (292)
+|+.+..++..+-+.+-+..++.+ .-.++...+.++.+.+++......+...+.--.+..+. ...+.+..+..-+
T Consensus 20 ~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~--~~~ea~~~~~~~~ 97 (132)
T PF00430_consen 20 LYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEE--ILAEAEKEAERII 97 (132)
T ss_dssp THHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (292)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~ 185 (292)
..+..++.++.-.-+..+..++..+--.+..
T Consensus 98 ~~a~~~i~~e~~~a~~~l~~~~~~la~~~a~ 128 (132)
T PF00430_consen 98 EQAEAEIEQEKEKAKKELRQEIVDLAVDIAE 128 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 285
>PRK11519 tyrosine kinase; Provisional
Probab=55.63 E-value=2.8e+02 Score=29.44 Aligned_cols=14 Identities=0% Similarity=-0.114 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 022758 79 FDRLARVVKSYANA 92 (292)
Q Consensus 79 f~Rl~~lira~~n~ 92 (292)
..++...+..+++-
T Consensus 207 ~~~~~~~l~~~l~V 220 (719)
T PRK11519 207 TLGMINNLQNNLTV 220 (719)
T ss_pred HHHHHHHHHhcceE
Confidence 33444444444444
No 286
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=55.51 E-value=1.6e+02 Score=26.71 Aligned_cols=48 Identities=10% Similarity=0.253 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 216 (292)
......++...+..+......++.++..+...+.++.+.+........
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444555544444444444444444444333
No 287
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=55.20 E-value=1.9e+02 Score=27.40 Aligned_cols=140 Identities=19% Similarity=0.226 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH-cCC-HHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR---------------KAQLALQ-KGE-EDLARE 164 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~---------------rA~~AL~-~G~-EdLAre 164 (292)
..+...+.++-+.+.++|..=...+. .-+..+++.++..+.+.+. +....+. .-+ +-|+.+
T Consensus 131 ~~l~~al~~AL~~l~~mR~~EG~~L~--~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el~~~~id~~Rl~qE 208 (291)
T TIGR00255 131 ALILGALEEALLDFINMREFEGENLK--SDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDLAQEFLDLNRLEQE 208 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 56777777777777777776443322 2333344443333333333 3333320 112 234444
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHH
Q 022758 165 A--LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSA 242 (292)
Q Consensus 165 A--L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~a~~~ 242 (292)
+ +..|.+..+.+..|...+++....+..=..-=++|.-=++|+.++.+++-++.+.+....-+- +....
T Consensus 209 val~adK~DI~EEl~RL~sHl~~f~~~L~~~~~vGrkLDFL~QEmnRE~NTigSKs~d~~is~~vV---------e~K~e 279 (291)
T TIGR00255 209 AALLAQRIDIAEEIDRLDSHVKEFYNILKKGEAVGRKLDFMMQELNRESNTLASKAIDADITNLAV---------EMKVL 279 (291)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHhHHHHHHHHccCcHHHHHHHH---------HHHHH
Confidence 3 234444444444444444444444333211123566668999999999888876665443222 24568
Q ss_pred HHHHHHHHHh
Q 022758 243 FEKMEEKVLT 252 (292)
Q Consensus 243 feR~eeki~~ 252 (292)
+|+|+|+|.-
T Consensus 280 iEkiREQVQN 289 (291)
T TIGR00255 280 IEKIKEQIQN 289 (291)
T ss_pred HHHHHHHHhc
Confidence 9999998863
No 288
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=55.11 E-value=1.2e+02 Score=25.21 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHhcc---cCCHHHHHHHHHHHHHHHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSS---FEDPEKILEQAVLEMNDDLVKMRQA 121 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~---~EDPe~mLeQ~Iremee~l~kar~a 121 (292)
+|+.+..++..+-..+-+. ++.-..-++....+.++.+.+++..
T Consensus 28 l~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~e 74 (141)
T PRK08476 28 LYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREE 74 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555554443333333 3333344555555556666655555
No 289
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=55.00 E-value=83 Score=24.63 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
++..++.++.++..+......|+.++...+.++..|
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555555555555444
No 290
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=54.86 E-value=1.8e+02 Score=26.95 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022758 160 DLAREALKRRK------SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGN 233 (292)
Q Consensus 160 dLAreAL~rk~------~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~ 233 (292)
.|-|..|.-.. ++......++.-++.....-+.|...+..++.++++.+.++..|.-.... +++.+..
T Consensus 115 AlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~------LeE~~~~ 188 (290)
T COG4026 115 ALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSR------LEEMLKK 188 (290)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHh
Q ss_pred CCCCcHHHHHHHHHHHHHhHHHHHHHhhccCCCcHHHHHhcccCCCcccccccC
Q 022758 234 VNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKVAFTSFSFSIFAFKFL 287 (292)
Q Consensus 234 ~~~~~a~~~feR~eeki~~~EA~AeA~~eL~~~~Le~~fa~Le~~~~i~~~~~~ 287 (292)
. .+...+++.|..+++...+...++.-.+|...-..+...+ |+..-|.
T Consensus 189 l-----~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~et~~l~p~d-ie~~~~~ 236 (290)
T COG4026 189 L-----PGEVYDLKKRWDELEPGVELPEEELISDLVKETLNLAPKD-IEGQGYI 236 (290)
T ss_pred c-----hhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhccCchh-ccceeee
No 291
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=54.84 E-value=2.6e+02 Score=28.83 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=58.2
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH----------H-HHHHH--
Q 022758 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLA----------------SQKRLENK----------C-KAAEQ-- 141 (292)
Q Consensus 91 n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A----------------~~k~le~k----------l-~~~~~-- 141 (292)
+.+--+-++...=++..++.|..++.++-..+..-+- -++++... + ++++.
T Consensus 152 ~aL~k~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW 231 (531)
T PF15450_consen 152 SALQKSQEEDSQKVDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKAQESSRLRTERSLREELESRW 231 (531)
T ss_pred HHHHhcchhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555566777888888888877666543322 11111111 1 11111
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 142 -ASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRL 199 (292)
Q Consensus 142 -~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~ 199 (292)
.+.++.+.=..||..+.|-..+..-.++..+.++...+...+.+++..+......|..
T Consensus 232 ~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~k 290 (531)
T PF15450_consen 232 QKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNK 290 (531)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333334566666665666666666666666666666666666666666555543
No 292
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=54.80 E-value=1.3e+02 Score=25.43 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=36.3
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022758 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (292)
Q Consensus 99 DP-e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (292)
.| ..+|+.==..+.+++..+...-..+.......+.++..++.++...-+.|+.....
T Consensus 31 kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~ 89 (164)
T PRK14473 31 RPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARA 89 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 36666666666667777777666666666666666666666666666666554333
No 293
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=54.24 E-value=2.1e+02 Score=27.48 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (292)
Q Consensus 111 mee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v 190 (292)
+.++|.-+|..+..+......-+.+|-+-..-+.+--+..+.+|+-+.|.|...+ -.|..++..|...-.-+...+
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi----~qy~~QLn~L~aENt~L~SkL 79 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTI----FQYNGQLNVLKAENTMLNSKL 79 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHhhhHHHHHHHHHHHhHHH
Confidence 4677888888888888888888888888777788888888888888888887765 346666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 191 NNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 191 ~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
+.=+.+-..|+..|+-++.++....
T Consensus 80 e~EKq~kerLEtEiES~rsRLaaAi 104 (305)
T PF14915_consen 80 EKEKQNKERLETEIESYRSRLAAAI 104 (305)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666655444
No 294
>PRK11519 tyrosine kinase; Provisional
Probab=54.14 E-value=3e+02 Score=29.27 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVK 117 (292)
Q Consensus 102 ~mLeQ~Iremee~l~k 117 (292)
.+++......-+...+
T Consensus 244 ~iaN~l~~~Yi~~~~~ 259 (719)
T PRK11519 244 DILNSITRNYLEQNIE 259 (719)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444333333333
No 295
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.00 E-value=58 Score=26.07 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (292)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~ 209 (292)
..+++++++++..+++++..-..|+.+|+.++.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344455555555555555555555555555544
No 296
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=53.99 E-value=3.7e+02 Score=30.40 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATA 123 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA 123 (292)
+-+++.|.+.-+.+.++++.++
T Consensus 68 ~~~~~~i~~ap~~~~~~~~~l~ 89 (1109)
T PRK10929 68 KQYQQVIDNFPKLSAELRQQLN 89 (1109)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444444444444444333
No 297
>PF14282 FlxA: FlxA-like protein
Probab=53.38 E-value=1.1e+02 Score=24.50 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 022758 199 LLESKIQEARSKKD 212 (292)
Q Consensus 199 ~Le~Ki~e~k~k~~ 212 (292)
.|..+|..+..++.
T Consensus 55 ~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 55 LLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 298
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.38 E-value=2.9e+02 Score=28.86 Aligned_cols=144 Identities=15% Similarity=0.244 Sum_probs=74.1
Q ss_pred CchHHHHHHHHHHHHHHHhcc---c---CCH---HHHHHHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHHHHHHH
Q 022758 76 MNLFDRLARVVKSYANAILSS---F---EDP---EKILEQAVLEMNDDLV------KMRQA-TAQVLASQKRLENKCKAA 139 (292)
Q Consensus 76 M~if~Rl~~lira~~n~~ld~---~---EDP---e~mLeQ~Iremee~l~------kar~a-lA~v~A~~k~le~kl~~~ 139 (292)
.+++.=|.++|+-+.+.+-+. - +|- -..+|..|+....-+. ..... .+++-....-+-.+++.+
T Consensus 161 L~mlhWlvdlI~~~t~~v~~~~l~q~~~ed~~m~k~f~dy~~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~ie~l 240 (581)
T KOG0995|consen 161 LGMLHWLVDLIRINTALVEDSPLEQEEAEDKTMNKLFFDYTIRSYTSFLKGEDNSSELEDELKHRLEKYFTSIANEIEDL 240 (581)
T ss_pred HHHHHHHHHHHHHhHHHhhccchhccchHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778887776665533 1 222 1345666766543332 22222 222333333355566677
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 140 EQASEDWYRKAQLALQKGEEDLAREALKRRKS-YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 140 ~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~-~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
++....++++.. .+.++. -..+-|.++.. +++.+..|+.-+.++...-..+...+..+...|++-..+.+.|+...
T Consensus 241 ~~~n~~l~e~i~-e~ek~~--~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~ 317 (581)
T KOG0995|consen 241 KKTNRELEEMIN-EREKDP--GKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKEN 317 (581)
T ss_pred HHHHHHHHHHHH-HHhcCc--chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766 344433 22333433333 66666666666666555555555555555555555555555554444
Q ss_pred HHHH
Q 022758 219 QSAK 222 (292)
Q Consensus 219 ~~Ak 222 (292)
..-+
T Consensus 318 d~Lk 321 (581)
T KOG0995|consen 318 DELK 321 (581)
T ss_pred HHHH
Confidence 3333
No 299
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=53.25 E-value=2e+02 Score=27.92 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 022758 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEK 245 (292)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~a~~~feR 245 (292)
.++..+++++..+++.......+..+++......--..|..-+.+...++...+..+.. ......+.++.
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~----------~~~e~~~~i~~ 72 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS----------LSAEERELIEK 72 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------CChhHHHHHHH
Confidence 44555566666666666666666666666666655555655555555555554443222 11223455666
Q ss_pred HHHHHHhHHHH
Q 022758 246 MEEKVLTMESQ 256 (292)
Q Consensus 246 ~eeki~~~EA~ 256 (292)
+++.+.+....
T Consensus 73 L~~~Ik~r~~~ 83 (330)
T PF07851_consen 73 LEEDIKERRCQ 83 (330)
T ss_pred HHHHHHHHHhh
Confidence 66665555433
No 300
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=53.12 E-value=1.5e+02 Score=25.49 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 022758 107 AVLEMNDDLVKMRQA 121 (292)
Q Consensus 107 ~Iremee~l~kar~a 121 (292)
.+.+.+..+.+++..
T Consensus 71 ~~~e~e~~L~~a~~e 85 (175)
T PRK14472 71 ILRKNRELLAKADAE 85 (175)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 301
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.05 E-value=98 Score=23.40 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
.+++++..|+-.+.-++..++.|...+.+...-+..++.+...|.-+.
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl 52 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKL 52 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666665555443
No 302
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=53.03 E-value=79 Score=29.28 Aligned_cols=99 Identities=14% Similarity=0.218 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH-------HHH------cCCHHHH
Q 022758 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY-------------RKAQL-------ALQ------KGEEDLA 162 (292)
Q Consensus 109 remee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e-------------~rA~~-------AL~------~G~EdLA 162 (292)
.+++.++..+...+.+....-.+||..+...+.....-. ..... +-. .++..+-
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 456667777777777777777777777777765421111 11000 000 2344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 163 reAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
--.-.++-.+..+..+|+.++..+...+..|+..+..|+.-=-.+
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666777777777777777777777777776665543333
No 303
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=52.87 E-value=1.7e+02 Score=26.20 Aligned_cols=111 Identities=18% Similarity=0.266 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C-------------HHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG---E-------------EDLAREALK 167 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G---~-------------EdLAreAL~ 167 (292)
|+..=+.+.++..++.+.+-.+--.-.+|..++..+...+.... .||..+ + |+-.+..+.
T Consensus 13 L~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q----qal~~aK~l~eEledLk~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 13 LQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ----QALQKAKALEEELEDLKTLAKSLEEENRSLLA 88 (193)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555555555555443 223322 1 222344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
+-...+.....|...++.++..-.++......++.++.++-.+...|+-+.
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 455555555555555666666666666666666666666655555555544
No 304
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=52.83 E-value=4.6 Score=43.78 Aligned_cols=140 Identities=18% Similarity=0.277 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSSFED---PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~ED---Pe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (292)
+..|=...+.+.+.++-...+. ..+.+++.+.|+.+.+..+..........+++++.++..++..+.+-..-+..+.
T Consensus 606 ~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ 685 (859)
T PF01576_consen 606 VSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAE 685 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344344444544444333332 3467777777777777777777677777777777777777776666665555554
Q ss_pred HcCCH----------HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 155 QKGEE----------DLA------REALKRRKSYADNANALKAQLDQQKNVVNN-LVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 155 ~~G~E----------dLA------reAL~rk~~~e~~~~~l~~ql~~~~~~v~~-Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
.+.+- +|. ..+-..+..++.++..|+..++.++..... -+..+..|+.+|.++..+++.=.-+
T Consensus 686 ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~ 765 (859)
T PF01576_consen 686 EKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRR 765 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHH
Confidence 44431 111 122234555566666666666665554333 2456667777777777766554433
No 305
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=52.73 E-value=1.4e+02 Score=25.21 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=27.9
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (292)
Q Consensus 99 DP-e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~ 151 (292)
.| ..+|+.==....+++..++..-..+-......+.++..++.+..+.-..|+
T Consensus 31 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~ 84 (164)
T PRK14471 31 KPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAR 84 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 355555555556666666665555444444555555555555444444443
No 306
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=52.58 E-value=2.3e+02 Score=27.51 Aligned_cols=80 Identities=16% Similarity=0.264 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED-LAREALKRRKSYADNANALKAQLDQQKN 188 (292)
Q Consensus 110 emee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~Ed-LAreAL~rk~~~e~~~~~l~~ql~~~~~ 188 (292)
...+.+..+.+.+--++-.-.-+.+-.+++..+++-+-.-+..|++.|++. .-++++. ++.+....+..+++++++
T Consensus 240 ~~~~~l~~aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~---el~k~~~~f~~qleELee 316 (336)
T PF05055_consen 240 KQKEQLDAAAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVK---ELKKNVESFTEQLEELEE 316 (336)
T ss_pred HHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHH---HHHHhHHHHHHHHHHHHH
Confidence 334444555555555556666677788888888889999999999999854 2233332 223333344444444444
Q ss_pred HHHH
Q 022758 189 VVNN 192 (292)
Q Consensus 189 ~v~~ 192 (292)
++..
T Consensus 317 hv~l 320 (336)
T PF05055_consen 317 HVYL 320 (336)
T ss_pred HHHH
Confidence 4433
No 307
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=52.47 E-value=2.2e+02 Score=27.33 Aligned_cols=128 Identities=19% Similarity=0.226 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHH-HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSSFEDPE-KILEQAVLEMN-----------DDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~EDPe-~mLeQ~Ireme-----------e~l~kar~alA~v~A~~k~le~kl~~~~~~~~~ 145 (292)
-|+++...|...++. -.-+|+ ..+.+.|.++. ++....+..+--.....+.++...+.++..+.+
T Consensus 164 wm~~~~~~i~nll~~---f~~ipe~~~a~~~Ie~ll~~d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqe 240 (307)
T PF15112_consen 164 WMRDFQMKIQNLLNE---FRNIPEIVAAGSRIEQLLTSDWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQE 240 (307)
T ss_pred HHHHHHHHHHHHHHH---hccChHHHHHHHHHHHHHhhhhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444441 223674 56666666666 555556666666667778888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 146 WYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (292)
Q Consensus 146 ~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k 210 (292)
...++..-...+++++ .-+.-...+-..=..|...+...-..++.|..++.+++..|.+++.+
T Consensus 241 l~~~~e~~~~~~ee~~--~~l~~~~~fL~~NkDL~~~l~~e~qkL~~l~~k~~~~~~~v~~~~~~ 303 (307)
T PF15112_consen 241 LYLQAEEQEVLPEEDS--KRLEVLKEFLRNNKDLRSNLQEELQKLDSLQTKHQKLESDVKELKSQ 303 (307)
T ss_pred HHHHHhhccccchhhh--HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHhh
Confidence 8877776554443322 22222333333333333333333355555555555666655555544
No 308
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=52.43 E-value=2.5e+02 Score=27.89 Aligned_cols=19 Identities=5% Similarity=0.134 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022758 132 LENKCKAAEQASEDWYRKA 150 (292)
Q Consensus 132 le~kl~~~~~~~~~~e~rA 150 (292)
+..+++.++.+-....+..
T Consensus 42 ~~~~~~~l~~erN~~sk~i 60 (418)
T TIGR00414 42 LLSEIEELQAKRNELSKQI 60 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333443333333333
No 309
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=52.31 E-value=1.2e+02 Score=24.39 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 220 (292)
|..+-+++..+++++...-..+..|+..+..|-..=..++-+-..|+.+...
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777788877777777666676666666666443
No 310
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.23 E-value=2e+02 Score=29.26 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 119 RQATAQVLASQKRLENKCKAAEQASEDWY 147 (292)
Q Consensus 119 r~alA~v~A~~k~le~kl~~~~~~~~~~e 147 (292)
+..|+.+++.-+.++.++..+..+-+.+.
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~ 86 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALK 86 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556666666555555444433
No 311
>PRK12472 hypothetical protein; Provisional
Probab=51.89 E-value=2.8e+02 Score=28.39 Aligned_cols=98 Identities=20% Similarity=0.188 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 113 DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG-EEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191 (292)
Q Consensus 113 e~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G-~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~ 191 (292)
....+..+.++.+.+.-+.+|+..+....+... |..+|..- .++--..|..+++..+.++.....+++.++...+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~----adk~l~~a~~d~~~~~a~~~~~~~~~~~~~a~~~~~~a~~~~~ 286 (508)
T PRK12472 211 TAAAAAAREAAPLKASLRKLERAKARADAELKR----ADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAE 286 (508)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333334444444455555555555554444433 33333332 2223334446888888888888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022758 192 NLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 192 ~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
.-.......+.....+..++.+.
T Consensus 287 ~~~~~~~~~~~a~~~a~~~~~~~ 309 (508)
T PRK12472 287 AKRAAAAATKEAAKAAAAKKAET 309 (508)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Confidence 77666666666666666655544
No 312
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.18 E-value=2.7e+02 Score=28.51 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
...+.+.+|+......-..+++++..+.+|.++|=.+-.+.+.|+-+
T Consensus 359 ~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~ 405 (508)
T KOG3091|consen 359 AIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKR 405 (508)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445555555555555555566666666666655555555555533
No 313
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=51.06 E-value=71 Score=25.56 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (292)
Q Consensus 107 ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (292)
.+++++.++...++.++++.+....|+.+++.++...+-.++.|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 4567777788888888777777777777777776654455555543
No 314
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=50.95 E-value=1.6e+02 Score=25.25 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=39.7
Q ss_pred CCCcccccCchH-HHHHHHHHHHHHHHhcccC-CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 68 GGGALNTRMNLF-DRLARVVKSYANAILSSFE-DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (292)
Q Consensus 68 ~~~~~~~~M~if-~Rl~~lira~~n~~ld~~E-DP-e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~ 144 (292)
+||.+|.-.++| ..+..++-=. -+|..+- .| ..+|+.==..+.+.+..+..... ..+..+.+++..+.
T Consensus 11 ~~~~~~~~~~~~~~~iinflIl~--~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~-------ea~~~~~~~~~~L~ 81 (174)
T PRK07352 11 AEGGFGLNLNLLETNLINLAIVI--GLLYYFGRGFLGKILEERREAILQALKEAEERLR-------QAAQALAEAQQKLA 81 (174)
T ss_pred ccCCCCCchhHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 455557766644 3333222111 1222332 56 35565555555555555555544 44445555555555
Q ss_pred HHHHHHHHHHHcCC
Q 022758 145 DWYRKAQLALQKGE 158 (292)
Q Consensus 145 ~~e~rA~~AL~~G~ 158 (292)
++...|..-+....
T Consensus 82 ~a~~ea~~ii~~a~ 95 (174)
T PRK07352 82 QAQQEAERIRADAK 95 (174)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554444
No 315
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=50.90 E-value=3.8e+02 Score=29.56 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 022758 117 KMRQATAQVLASQKRLENKC---KAAEQASEDWYRKAQ 151 (292)
Q Consensus 117 kar~alA~v~A~~k~le~kl---~~~~~~~~~~e~rA~ 151 (292)
++|..+++..+.+.++++-. ++.+.++--|+++-.
T Consensus 390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~ 427 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYE 427 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66666777777766666555 555555555555543
No 316
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=50.88 E-value=1.6e+02 Score=25.36 Aligned_cols=86 Identities=10% Similarity=0.098 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHhcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSSFED---PEKILEQAVLEMNDDLVKMRQATAQVLAS-QKRLENKCKAAEQASEDWYRKAQLA 153 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~ED---Pe~mLeQ~Iremee~l~kar~alA~v~A~-~k~le~kl~~~~~~~~~~e~rA~~A 153 (292)
+|.+|..++..+-...-+.++. -..-++....+.++.+.+++....++... ...+. .+...+....+......
T Consensus 31 ~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~---a~~~~~~~~~ea~L~~~ 107 (155)
T PRK06569 31 ITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLE---SEFLIKKKNLEQDLKNS 107 (155)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 6777777776665544444443 34555666666777777777666555444 33332 23444555566666667
Q ss_pred HHcCCHHHHHHHH
Q 022758 154 LQKGEEDLAREAL 166 (292)
Q Consensus 154 L~~G~EdLAreAL 166 (292)
|..|..+.=..+-
T Consensus 108 ~~~~~~~~~~~~~ 120 (155)
T PRK06569 108 INQNIEDINLAAK 120 (155)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666655554
No 317
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=50.77 E-value=2.2e+02 Score=26.79 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (292)
++.|...|..+.+++.+.+..+..+-+.+..|+.+++.-..+.+.-+++-.. |++=+
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~s-Lq~vR 220 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQS-LQSVR 220 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC
Confidence 5788888999999999999999999999999999999888888877776543 55444
No 318
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=50.71 E-value=1.4e+02 Score=26.00 Aligned_cols=44 Identities=18% Similarity=0.159 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (292)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 221 (292)
.++.++..++..++.|...+..|+.++..++....+|..-++.|
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444455544444444433
No 319
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=50.61 E-value=3.6e+02 Score=29.27 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
..++-+....+-.+++...++..++-|++..+.+-
T Consensus 490 q~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN 524 (861)
T PF15254_consen 490 QQFDIETTRIKIEVEEALVNVKSLQFKLEASEKEN 524 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Confidence 33333334444444444444444444544444433
No 320
>PRK01156 chromosome segregation protein; Provisional
Probab=50.58 E-value=3.6e+02 Score=29.18 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k 210 (292)
...+..+...+......+..++.++..++.++..++..
T Consensus 687 ~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~ 724 (895)
T PRK01156 687 RKALDDAKANRARLESTIEILRTRINELSDRINDINET 724 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444333333
No 321
>PRK14127 cell division protein GpsB; Provisional
Probab=50.55 E-value=50 Score=26.85 Aligned_cols=33 Identities=9% Similarity=0.197 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (292)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 212 (292)
-..++.+...+..|+..+..|+.++.+++.+..
T Consensus 36 ~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 36 IKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444555555555555555555555555444
No 322
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=50.45 E-value=69 Score=22.80 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=26.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 151 QLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (292)
Q Consensus 151 ~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ 202 (292)
..|...|| |.+.+.+..+.+....+..+....++.|+..+.+||.
T Consensus 8 q~AiasGD-------La~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 8 QQAIASGD-------LAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHcCc-------HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 44566666 4445555555566666666666666666666666553
No 323
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=50.43 E-value=92 Score=26.23 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 193 LVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (292)
Q Consensus 193 Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~Ak 222 (292)
|..++.+|...+..++.+++.++.+...+.
T Consensus 86 L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 86 LQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455666667777777666553
No 324
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=50.30 E-value=2.8e+02 Score=27.78 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 022758 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (292)
Q Consensus 79 f~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (292)
|.=+-.++.+..+-+-.++-+=+...-..+.|+...+.... +-.-..++.++.++..++.+..+-... |-..+
T Consensus 178 FrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~n------L~~lr~~k~~Lt~l~~rvqkvRDeLe~-LLddd 250 (414)
T KOG2662|consen 178 FRALEVALEAACSFLDSRLSELETEAYPLLDELTNKISTLN------LERLRILKKRLTELTSRVQKVRDELEE-LLDDD 250 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHH-HhcCh
Confidence 44444455555444433333333334444444444444333 333455566666677777777766666 44578
Q ss_pred HHHHHHHHHHHH--------------------HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 159 EDLAREALKRRK--------------------SY-----------ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 159 EdLAreAL~rk~--------------------~~-----------e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
||+|.-.|.+|. .. ++.+++++=-++.+=.+++.+..++..|..-|.+.
T Consensus 251 ~Dma~mYLT~K~~~~~~~~~~~~sp~~~~~~~r~~~~~~~s~~~~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddT 330 (414)
T KOG2662|consen 251 DDMAEMYLTRKLAQASSPESAPTSPTIKAGISRAKSNRASSTVRGEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDT 330 (414)
T ss_pred HHHHHHHHhHHhhhccccccCCCCccccCCccchhhcccchhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 899999999992 22 57778888888887777777777777777777666
Q ss_pred HHHHH
Q 022758 208 RSKKD 212 (292)
Q Consensus 208 k~k~~ 212 (292)
+.=.+
T Consensus 331 Ed~In 335 (414)
T KOG2662|consen 331 EDIIN 335 (414)
T ss_pred HHHHH
Confidence 55443
No 325
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=50.26 E-value=3.1e+02 Score=28.38 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLARE 164 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAre 164 (292)
.++++.|+-++-+.+-++..+...-+.++.++.+.-++-.-++ -++.|+..|.-+||..
T Consensus 600 ~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQ----gakKAVhdaK~ElA~~ 658 (790)
T PF07794_consen 600 GFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQ----GAKKAVHDAKVELAAA 658 (790)
T ss_pred hhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHH
Confidence 4566777777777766666666555544444444444333332 2445777787788743
No 326
>PLN02939 transferase, transferring glycosyl groups
Probab=49.89 E-value=4.1e+02 Score=29.66 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKR-LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~-le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~ 180 (292)
..|+-++++++..+..+...+.++...+.. +=.+.+.++........++. -|-..|.+-+++.+++..|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 337 (977)
T PLN02939 267 SLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVE---------KAALVLDQNQDLRDKVDKLE 337 (977)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhccchHHHHHHHHHH
Confidence 567778888888877777776665554322 22333444444444444443 34444555666666666666
Q ss_pred HHHHHH
Q 022758 181 AQLDQQ 186 (292)
Q Consensus 181 ~ql~~~ 186 (292)
..++..
T Consensus 338 ~~~~~~ 343 (977)
T PLN02939 338 ASLKEA 343 (977)
T ss_pred HHHHHh
Confidence 666553
No 327
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=49.85 E-value=1.8e+02 Score=27.90 Aligned_cols=58 Identities=12% Similarity=0.246 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 223 (292)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkA 223 (292)
..++..++..+...+..++.+..-+..|......=...+..++.+...|....-.+.+
T Consensus 262 ~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa 319 (344)
T PF12777_consen 262 QKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSLLAAA 319 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4455666666677777777777777777777666677777777777777666544433
No 328
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=49.72 E-value=2.1e+02 Score=26.37 Aligned_cols=102 Identities=22% Similarity=0.305 Sum_probs=61.1
Q ss_pred CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 022758 98 EDPE--KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 175 (292)
Q Consensus 98 EDPe--~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~ 175 (292)
-||. .||++.+... .++.......-....+.-+.+..++..+..++.+-+.++.+-+ =|-+.
T Consensus 115 ~D~~wqEmLn~A~~kV----neAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSr------------PYfe~ 178 (239)
T PF05276_consen 115 FDPAWQEMLNHATQKV----NEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSR------------PYFEL 178 (239)
T ss_pred ccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------HHHHH
Confidence 4774 7777666543 3444444555555666667777888888888877777766443 23444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
-..+..+++.+...|..|...+...+..|...-..++.+-
T Consensus 179 K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~IS 218 (239)
T PF05276_consen 179 KAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQIS 218 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666555555555544444433
No 329
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=49.71 E-value=2.4e+02 Score=26.98 Aligned_cols=71 Identities=7% Similarity=0.185 Sum_probs=45.3
Q ss_pred CchHHHHHHH------HHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 76 MNLFDRLARV------VKSYANAILSSFED-PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (292)
Q Consensus 76 M~if~Rl~~l------ira~~n~~ld~~ED-Pe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~ 146 (292)
+.+|.+.... +-..++.+.+++.+ -...|.-.|.++++.|...++.+......-..++..++.+.....++
T Consensus 37 Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~ 114 (301)
T PF06120_consen 37 YYFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEK 114 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566665542 34445555555442 23556667777888888888888887777777777777666654444
No 330
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=49.39 E-value=1.1e+02 Score=22.91 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
++.|...-+.+.....++...+..|..++.+.....
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~ 49 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQI 49 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 331
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=49.28 E-value=1.9e+02 Score=25.69 Aligned_cols=22 Identities=18% Similarity=0.003 Sum_probs=11.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHH
Q 022758 97 FEDPEKILEQAVLEMNDDLVKM 118 (292)
Q Consensus 97 ~EDPe~mLeQ~Iremee~l~ka 118 (292)
..||...+...+-.++..+.++
T Consensus 6 ~fDP~qaWKdmy~aTE~~wak~ 27 (189)
T TIGR02132 6 VFDPFQAWKDAYDKTESFWGKA 27 (189)
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444
No 332
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=49.20 E-value=74 Score=31.09 Aligned_cols=41 Identities=15% Similarity=0.357 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 167 ~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
.+..++++++..++..+......+..+...+..++.++.++
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544444444444444444444443
No 333
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=49.08 E-value=2.5e+02 Score=26.88 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 022758 108 VLEMNDDLVKMRQ 120 (292)
Q Consensus 108 Iremee~l~kar~ 120 (292)
+..++.++.+++.
T Consensus 101 ~~~~~a~l~~~~~ 113 (370)
T PRK11578 101 IKEVEATLMELRA 113 (370)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 334
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=48.89 E-value=3.7e+02 Score=28.93 Aligned_cols=64 Identities=8% Similarity=0.108 Sum_probs=46.4
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 89 YANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (292)
Q Consensus 89 ~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (292)
..++.|..++.-..-|.+.+++-++--...+..+-+.-+..++-+..|...+..++.++.++..
T Consensus 492 K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a 555 (961)
T KOG4673|consen 492 KKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALA 555 (961)
T ss_pred HhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3344555555555667777776666666666677777888888888888999999999988764
No 335
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=48.68 E-value=4.1e+02 Score=29.27 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022758 105 EQAVLEMNDDLVKMRQATAQVLA 127 (292)
Q Consensus 105 eQ~Iremee~l~kar~alA~v~A 127 (292)
+..+++.++.|...++..++++.
T Consensus 290 eelVk~~qeeLd~lkqt~t~a~g 312 (1265)
T KOG0976|consen 290 EELVKELQEELDTLKQTRTRADG 312 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444555555555555544443
No 336
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=48.50 E-value=1.1e+02 Score=22.54 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhcccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 79 FDRLARVVKSYANAILSSFEDP----EKILEQAVLEMNDDLVKMRQATAQVL-ASQKRLENKCKAAEQASEDWYRKA 150 (292)
Q Consensus 79 f~Rl~~lira~~n~~ld~~EDP----e~mLeQ~Iremee~l~kar~alA~v~-A~~k~le~kl~~~~~~~~~~e~rA 150 (292)
|.-+..-|...++.+-..-.+. ..-++..|.++++-|.++.-.+-.+= ..+..+..++..++.+..++....
T Consensus 1 f~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555554332221 34555555555555555555544332 455566666666666666665543
No 337
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=48.50 E-value=1.1e+02 Score=22.56 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 022758 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (292)
Q Consensus 98 EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (292)
.||+=+.+|+ ++.+.|..+... .....+..-..+....+..+......++..++-+-|+..+.+..-+..-..
T Consensus 2 ~d~eFLme~m--E~rE~le~~~~~-----~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~ 74 (78)
T PF07743_consen 2 MDPEFLMEQM--ELREELEEAQNS-----DDEAELEELKKEIEERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLE 74 (78)
T ss_dssp S-HHHHHHHH--HHHHHHHHHCCC-----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH--HHHHHHHHhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence 3666555544 566666666321 011233334445555666666777777789999999999888876655444
Q ss_pred HH
Q 022758 178 AL 179 (292)
Q Consensus 178 ~l 179 (292)
.+
T Consensus 75 ~i 76 (78)
T PF07743_consen 75 EI 76 (78)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 338
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.22 E-value=1e+02 Score=22.18 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 191 NNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 191 ~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
++|..++..|..|+..+......+++-
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444333
No 339
>PF15556 Zwint: ZW10 interactor
Probab=47.68 E-value=2.2e+02 Score=25.94 Aligned_cols=91 Identities=18% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCCC------C
Q 022758 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSE-----MLGNVNT------S 237 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~-----~~~~~~~------~ 237 (292)
|+.|.+.++.+...+.++-.+++.......+|+.-++.++.|+....-+...|+-+-++.. .+..++. .
T Consensus 72 KAtYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~ 151 (252)
T PF15556_consen 72 KATYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQT 151 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cHHHHHHHHHHHHHhHHHHHHH
Q 022758 238 SALSAFEKMEEKVLTMESQADS 259 (292)
Q Consensus 238 ~a~~~feR~eeki~~~EA~AeA 259 (292)
.+...|+++...+....-++..
T Consensus 152 ~~qqeLe~l~qeL~~lkqQa~q 173 (252)
T PF15556_consen 152 GTQQELERLYQELGTLKQQAGQ 173 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 340
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=47.50 E-value=2.4e+02 Score=26.38 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 83 ARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLA 127 (292)
Q Consensus 83 ~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A 127 (292)
..-.++.+++|-++.+.-..-|.+.+.+++..|.++...|.-..+
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677777777777778888888888888888888765443
No 341
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.49 E-value=2.4e+02 Score=26.25 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHH-HHHHHHHHHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSSFEDPE-KILEQAVLEMNDDLVK 117 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~EDPe-~mLeQ~Iremee~l~k 117 (292)
.++||.......-..+-..+-+|- .+++--|.++...-.+
T Consensus 89 a~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~ 129 (248)
T cd07619 89 TEDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKH 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455666666666666666666773 4555444444433333
No 342
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.28 E-value=98 Score=23.40 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (292)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k 208 (292)
+-.++.+++|-..+.++...++++..+++-|-.|+.+++
T Consensus 18 AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 18 AFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344566777777777777777788777777777776654
No 343
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=47.11 E-value=6.3 Score=42.70 Aligned_cols=53 Identities=13% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
......+..++..++.+++......+.+...+..++.++..++..++.+....
T Consensus 573 ~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~ 625 (859)
T PF01576_consen 573 QKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREAL 625 (859)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777788888888777777777777777777777777777776543
No 344
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=46.31 E-value=3.2e+02 Score=27.38 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022758 105 EQAVLEMNDDLVKMRQA 121 (292)
Q Consensus 105 eQ~Iremee~l~kar~a 121 (292)
+....+.++.+.+++..
T Consensus 52 ~~~~~~~e~~L~~Ak~e 68 (445)
T PRK13428 52 AEADQAHTKAVEDAKAE 68 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333334443333
No 345
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=46.25 E-value=1.2e+02 Score=22.34 Aligned_cols=47 Identities=15% Similarity=0.320 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
+..+.+..++..++..+..++.++......+.++..+..+.+.+...
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666655544
No 346
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=46.12 E-value=1.5e+02 Score=25.18 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022758 199 LLESKIQEARSKKDTLKARAQS 220 (292)
Q Consensus 199 ~Le~Ki~e~k~k~~~LkAr~~~ 220 (292)
+|...|.+++.+...+..+...
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 347
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=45.83 E-value=2.2e+02 Score=25.34 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (292)
Q Consensus 163 reAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~Ak 222 (292)
..+......+...+...+..+.............+.+-..-+...+.+.+.|.-....++
T Consensus 105 ~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar 164 (188)
T PF05335_consen 105 QQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAAR 164 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444433335555555555554444433
No 348
>PRK07737 fliD flagellar capping protein; Validated
Probab=45.73 E-value=1.7e+02 Score=29.71 Aligned_cols=53 Identities=8% Similarity=0.137 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 130 KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (292)
Q Consensus 130 k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l 197 (292)
.-+..++..+..++..|+.+...- ...|..+...|+..+.+++.+-.-|...+
T Consensus 444 ~~l~~~i~~l~~~i~~~~~rl~~~---------------e~ry~~qf~ale~~~s~mnsq~s~L~~~l 496 (501)
T PRK07737 444 FAIGKDLNQIETQIDRFQDRLKQI---------------EDRYYKKFSAMEKAIQKANEQSMYLMNAL 496 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555443 12356666677777777777666665554
No 349
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=45.63 E-value=1.6e+02 Score=23.59 Aligned_cols=104 Identities=20% Similarity=0.184 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (292)
Q Consensus 108 Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~ 187 (292)
+..++..|..-+..+...+..-..-+..+...+..+.+--.+-...|..++. -...|+.+...-..........+..+.
T Consensus 9 ~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~-k~~rA~k~a~~e~k~~~~k~~ei~~l~ 87 (126)
T PF13863_consen 9 MFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEA-KRERAEKRAEEEKKKKEEKEAEIKKLK 87 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544444444445555554444444444455554443 334455555555556666666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 188 NVVNNLVSNTRLLESKIQEARSKKD 212 (292)
Q Consensus 188 ~~v~~Lk~~l~~Le~Ki~e~k~k~~ 212 (292)
..+..|+..+..++.++..++-=.+
T Consensus 88 ~~l~~l~~~~~k~e~~l~~~~~Y~~ 112 (126)
T PF13863_consen 88 AELEELKSEISKLEEKLEEYKKYEE 112 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766666654433
No 350
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=45.55 E-value=2.4e+02 Score=25.81 Aligned_cols=141 Identities=13% Similarity=0.200 Sum_probs=73.7
Q ss_pred ccccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH
Q 022758 72 LNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKC-------------KA 138 (292)
Q Consensus 72 ~~~~M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl-------------~~ 138 (292)
.|.+-+|+.++..+-.. ..++.+++-..-|.+...+.++.|.+++..+..-...-..+..++ ..
T Consensus 5 ~~lP~~l~~~~~~v~~~---~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~ 81 (296)
T PF13949_consen 5 EGLPPSLLEKSEEVRSE---GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNAS 81 (296)
T ss_dssp -S--HHHHHHHHHHHHT---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHH
T ss_pred CCCChHHHHHHHHHHhC---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHH
Confidence 35566788887776644 223444444444566666666666666666666665555565555 35
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Q 022758 139 AEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV-----------NNLVSNTRLLESKIQEA 207 (292)
Q Consensus 139 ~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v-----------~~Lk~~l~~Le~Ki~e~ 207 (292)
+...+.++......|-.... ..+..+.. ....+..|....+.+...+ ...-..++.+-.++.++
T Consensus 82 l~~~l~~~~~~L~~A~~sD~--~~~~~~~~---~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l 156 (296)
T PF13949_consen 82 LRKELQKYREYLEQASESDS--QLRSKLES---IEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEEL 156 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHH---HHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHH--HHHHHHHH---HHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHH
Confidence 56666666665555444332 22222222 2233333322222222211 22335566667777888
Q ss_pred HHHHHHHHHHHHH
Q 022758 208 RSKKDTLKARAQS 220 (292)
Q Consensus 208 k~k~~~LkAr~~~ 220 (292)
+.+|..+......
T Consensus 157 ~~eR~~~~~~lk~ 169 (296)
T PF13949_consen 157 KKEREELLEQLKE 169 (296)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776664
No 351
>PLN02769 Probable galacturonosyltransferase
Probab=45.31 E-value=1.6e+02 Score=31.07 Aligned_cols=110 Identities=16% Similarity=0.103 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 022758 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (292)
Q Consensus 98 EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (292)
|.-+.|-|-.++.|+++|..||.=++. +|..+--..-..++...+.+.+.-.-. ...+.||=..+..+....+..+.
T Consensus 173 e~~~~~~d~~~~~l~Dql~~Ak~y~~~-iak~~~~~~l~~el~~~i~e~~~~l~~--~~~d~dlp~~~~~~~~~m~~~~~ 249 (629)
T PLN02769 173 EHKEVMKDSIVKRLKDQLFVARAYYPS-IAKLPGQEKLTRELKQNIQEHERVLSE--SITDADLPPFIQKKLEKMEQTIA 249 (629)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHh-hcccCCcHHHHHHHHHHHHHHHHHHhh--ccccccCChhHHHHHHHHHHHHH
Confidence 445677788999999999999985422 222222223333444445444443333 34477788888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (292)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k 210 (292)
..+.........+.+|+.-+..+|.+..-.+.+
T Consensus 250 ~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq 282 (629)
T PLN02769 250 RAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQ 282 (629)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777788888888887776644433
No 352
>PRK14139 heat shock protein GrpE; Provisional
Probab=45.31 E-value=1.7e+02 Score=25.90 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 212 (292)
.+..+..++..++.++..+..+++.+..+...++.++.+..
T Consensus 30 ~~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~ 70 (185)
T PRK14139 30 AEDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQ 70 (185)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666655555554443
No 353
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=45.14 E-value=3.6e+02 Score=27.70 Aligned_cols=104 Identities=15% Similarity=0.233 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCCcHHHHHH
Q 022758 169 RKSYADNANALKAQLDQQKNVVNNLVSNTR---LLESKIQEARSKKDTLKARAQSAKTA-TKVSEMLGNVNTSSALSAFE 244 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~---~Le~Ki~e~k~k~~~LkAr~~~AkAq-~~i~~~~~~~~~~~a~~~fe 244 (292)
+..+++.+..+-.+++..+.+.+.|.+.+. ++-.+|+.++.+...|+.-.+.-.+. .++..-+. .-...++
T Consensus 259 k~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~-----~~~g~l~ 333 (622)
T COG5185 259 KLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQ-----EWPGKLE 333 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----hcchHHH
Confidence 555666777777777777766666666554 34556667777766666554432221 11111111 1235788
Q ss_pred HHHHHHHhHHHHHHHhhccCCCcHHHHHhcccCC
Q 022758 245 KMEEKVLTMESQADSLNQLTTDDLEGKVAFTSFS 278 (292)
Q Consensus 245 R~eeki~~~EA~AeA~~eL~~~~Le~~fa~Le~~ 278 (292)
++...|+..|.+.+++.+ ..|+|..++..-+.+
T Consensus 334 kl~~eie~kEeei~~L~~-~~d~L~~q~~kq~Is 366 (622)
T COG5185 334 KLKSEIELKEEEIKALQS-NIDELHKQLRKQGIS 366 (622)
T ss_pred HHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcCCC
Confidence 999999999988888754 236677766654443
No 354
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=44.99 E-value=3.4e+02 Score=27.31 Aligned_cols=19 Identities=16% Similarity=0.490 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022758 108 VLEMNDDLVKMRQATAQVL 126 (292)
Q Consensus 108 Iremee~l~kar~alA~v~ 126 (292)
+.+++..+.+..+....+.
T Consensus 15 ~~~~~~~laq~~k~~s~~~ 33 (459)
T KOG0288|consen 15 LIDLNTELAQCEKAQSRLS 33 (459)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444433333333333
No 355
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=44.96 E-value=3e+02 Score=26.63 Aligned_cols=141 Identities=17% Similarity=0.223 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE-DLAREALKRRKSYADNANALK 180 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~E-dLAreAL~rk~~~e~~~~~l~ 180 (292)
.-|-+.+.+..+........+.. +.+++.+++..+.-+..+...- +.|++ --++... ..-+.+=
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~-------Lrqkl~E~qGD~KlLR~~la~~-r~~~~~~~~~~~~-------~ere~lV 132 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEE-------LRQKLNEAQGDIKLLREKLARQ-RVGDEGIGARHFP-------HEREDLV 132 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhchHHHHHHHHHhh-hhhhccccccccc-------hHHHHHH
Confidence 44556666666666555555443 3334444444433333322221 11111 1233333 3344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CcHHHHHHHHHHHHHhHHH
Q 022758 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNT-----SSALSAFEKMEEKVLTMES 255 (292)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~-----~~a~~~feR~eeki~~~EA 255 (292)
.+++.+..+..+|...++.+....+++..+++.++-.... ....++..++|-.. +.....=-=+.+++...+.
T Consensus 133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~R--LN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qe 210 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHR--LNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQE 210 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777788888888888888888888888766544 46677888877542 1111222234566666666
Q ss_pred HHHH
Q 022758 256 QADS 259 (292)
Q Consensus 256 ~AeA 259 (292)
+.+.
T Consensus 211 E~~l 214 (319)
T PF09789_consen 211 EKEL 214 (319)
T ss_pred HHHH
Confidence 5554
No 356
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=44.70 E-value=2.6e+02 Score=27.76 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022758 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (292)
Q Consensus 122 lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (292)
+...-..++.+..+++.++.+..+..++.......+
T Consensus 30 i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~ 65 (425)
T PRK05431 30 LLELDEERRELQTELEELQAERNALSKEIGQAKRKG 65 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333444555666666666666666666665433333
No 357
>PF14282 FlxA: FlxA-like protein
Probab=44.59 E-value=1.6e+02 Score=23.45 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022758 201 ESKIQEARSKKDTLKARA 218 (292)
Q Consensus 201 e~Ki~e~k~k~~~LkAr~ 218 (292)
..+++.+..++..|.+..
T Consensus 50 ~~q~q~Lq~QI~~LqaQI 67 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQI 67 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 358
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=44.59 E-value=5.2e+02 Score=29.32 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022758 189 VVNNLVSNTRLLESKIQEARS 209 (292)
Q Consensus 189 ~v~~Lk~~l~~Le~Ki~e~k~ 209 (292)
..+.+..+..+.+..+.....
T Consensus 280 ~~n~l~~~~~~~~~~l~~~~q 300 (1109)
T PRK10929 280 RMDLIASQQRQAASQTLQVRQ 300 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 359
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=44.24 E-value=3.4e+02 Score=27.15 Aligned_cols=51 Identities=8% Similarity=0.127 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (292)
.++++=-....+++.++...-.++-..+...+.++..++.+..+.-+.|+.
T Consensus 28 ~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~ 78 (445)
T PRK13428 28 RLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEARE 78 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455554443333333344444444444444444444443
No 360
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=43.93 E-value=55 Score=22.56 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
|+..++..+..++.+. .+|.+++.|+..|..+
T Consensus 10 Lqe~~d~IEqkiedid-------~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDID-------EQIAELEAKRQRLVDQ 41 (46)
T ss_dssp -----THHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHH-------HHHHHHHHHHHHHHHh
Confidence 3444444444444444 4445555556555543
No 361
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=43.93 E-value=3.8e+02 Score=27.63 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
|+.|+..+.+++..|.+++..-+..|+.+
T Consensus 485 YE~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 485 YEEQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444333
No 362
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=43.60 E-value=2.1e+02 Score=24.56 Aligned_cols=106 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~EDPe---~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (292)
+|+.|..++..+=..+.+.+++.+ .-.+....+.+..+.+++......+...+.-- -...+..+.+....+..-+
T Consensus 39 l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a--~~~~~~~~~~A~~ea~~~~ 116 (173)
T PRK13453 39 AWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQA--RQQQEQIIHEANVRANGMI 116 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (292)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~ 185 (292)
...+.++..+--.-...+..++..+--.+..
T Consensus 117 ~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~ 147 (173)
T PRK13453 117 ETAQSEINSQKERAIADINNQVSELSVLIAS 147 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 363
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=43.58 E-value=2.1e+02 Score=31.15 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Q 022758 140 EQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (292)
Q Consensus 140 ~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 178 (292)
....++.=++.+...+.|+-|-|++.|.+..+.-+.+..
T Consensus 537 ~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenmq~ 575 (820)
T PF13779_consen 537 QQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENMQN 575 (820)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Confidence 444555566677777788888888888766655554443
No 364
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=43.58 E-value=2.4e+02 Score=28.43 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (292)
Q Consensus 128 ~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~ 187 (292)
..+.+..+.+.++.+.....++...++.+|.+ -+...+.+...+.+++..++..+...+
T Consensus 37 ~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~-~~~~l~~e~~~l~~~l~~~e~~~~~~~ 95 (429)
T COG0172 37 ERRKLLRELEELQAERNELSKEIGRALKRGED-DAEELIAEVKELKEKLKELEAALDELE 95 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34455555556666666666666666777666 444444444444444444444433333
No 365
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=42.96 E-value=5.3e+02 Score=28.99 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (292)
.+=|.-.+++|++.|.+..+.++..--..|.+..+.+.+...+...+.-
T Consensus 410 ~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s 458 (1195)
T KOG4643|consen 410 HKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRS 458 (1195)
T ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3557778888888888888888888888888888777777766655443
No 366
>PRK14161 heat shock protein GrpE; Provisional
Probab=42.86 E-value=1.8e+02 Score=25.53 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (292)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~ 219 (292)
..++.....++.|+..+.+++.++..+.+..+.++-|..
T Consensus 19 ~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ 57 (178)
T PRK14161 19 EIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLE 57 (178)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444445555555544433
No 367
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=42.77 E-value=1.9e+02 Score=23.76 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
+.+..++..++.+...++.+...+..+..+++.+......+
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444433
No 368
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=42.65 E-value=67 Score=29.81 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=26.1
Q ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 99 DP--EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (292)
Q Consensus 99 DP--e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~ 144 (292)
|| +.+|.+.|+.-=+..--+-+.+--+-..-+++..++++++.++.
T Consensus 25 D~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~ 72 (247)
T PF09849_consen 25 DPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQ 72 (247)
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 47777777776666665555544444444444555555544443
No 369
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=42.63 E-value=4.7e+02 Score=28.26 Aligned_cols=118 Identities=11% Similarity=0.098 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 022758 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLAS-QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 175 (292)
Q Consensus 97 ~EDPe~mLeQ~Iremee~l~kar~alA~v~A~-~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~ 175 (292)
+++....++..++|+..=+......+-.++.. ...++.++.. .++.-....-.-++..-+.-+-.+|....+..+.
T Consensus 171 v~~~~~~~~~~~~Dl~~~l~~~~~qi~~l~~~ny~~~~~~v~~---~L~~~~~~lg~~i~~~l~~~~~~~L~~i~~l~~~ 247 (806)
T PF05478_consen 171 VDDTPNTVNSTLDDLRTFLNDTPQQIDHLLVQNYSELKDHVSS---DLDNIGSLLGGDIQDQLGSNVYPALDSILDLAQA 247 (806)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHhccchhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34446778888888888888888887777666 4444443332 2223333333334444455677777778877778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
+.+....+......+.+|+....+|+.-+.+.|+........
T Consensus 248 ~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~ 289 (806)
T PF05478_consen 248 MQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQD 289 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888899999999999999999999888888888777766
No 370
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=42.44 E-value=4.3e+02 Score=27.82 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 164 EALKRRKSYADNANALKAQLDQQKNV 189 (292)
Q Consensus 164 eAL~rk~~~e~~~~~l~~ql~~~~~~ 189 (292)
.|+..-..+.+++..++.-...+...
T Consensus 157 RAlsQN~eLK~QL~Elq~~Fv~ltne 182 (617)
T PF15070_consen 157 RALSQNRELKEQLAELQDAFVKLTNE 182 (617)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555555555544444443
No 371
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=42.19 E-value=3.5e+02 Score=27.13 Aligned_cols=48 Identities=10% Similarity=0.164 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNLVS----NTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~----~l~~Le~Ki~e~k~k~~~Lk 215 (292)
+...+..++..++.+++.++..++++++ ++..|+.-|..|......|.
T Consensus 407 ~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~ 458 (462)
T PRK08032 407 ATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLT 458 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777766666655444 44455555555555544443
No 372
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=42.03 E-value=2.8e+02 Score=26.46 Aligned_cols=16 Identities=0% Similarity=0.235 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQV 125 (292)
Q Consensus 110 emee~l~kar~alA~v 125 (292)
+.+.++.+++..+.+.
T Consensus 96 ~~~~~~~~~~a~l~~~ 111 (370)
T PRK11578 96 QAENQIKEVEATLMEL 111 (370)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555444433
No 373
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=42.00 E-value=1.4e+02 Score=23.35 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 182 QLDQQKNVVNNLVSNTRLLESKIQEARS 209 (292)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~ 209 (292)
+++++..+|..|+.+..++...++.++.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~a 52 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRP 52 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 374
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=41.95 E-value=3.3e+02 Score=26.26 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 022758 169 RKSYADNANALKAQLDQ-QKNVVNNLVSNTRLLES 202 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~-~~~~v~~Lk~~l~~Le~ 202 (292)
...+...-..++..+++ ++-.|.+|...+..|+.
T Consensus 115 l~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~ 149 (310)
T PF09755_consen 115 LNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEK 149 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444455555554 33445566666655544
No 375
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=41.87 E-value=4.1e+02 Score=27.41 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
+...+++ +|......++.|+..|-+.+..|-.++..-+.+++.||
T Consensus 470 ~i~~LqD---EL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 470 NISRLQD---ELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444 44444555667888888888888888888888888777
No 376
>PF11047 SopD: Salmonella outer protein D; InterPro: IPR022747 The proteins in this entry are also known as secreted effector proteins. Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. They contribute to the formation of Salmonella-induced filaments (Sifs) in infected epithelial cells and to replication in macrophages []. SopD is a type III virulence effector protein whose structure consists of 38% alpha-helix and 26% beta-strand [].; GO: 0009405 pathogenesis, 0033644 host cell membrane
Probab=41.72 E-value=13 Score=35.19 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=15.4
Q ss_pred cccCchHHHHHHHHHHH
Q 022758 73 NTRMNLFDRLARVVKSY 89 (292)
Q Consensus 73 ~~~M~if~Rl~~lira~ 89 (292)
.++||+|+||+|.|++.
T Consensus 31 A~hMGlWDKfKD~FRse 47 (319)
T PF11047_consen 31 ATHMGLWDKFKDWFRSE 47 (319)
T ss_pred hhhhhhHHHHHHHHhcc
Confidence 47899999999999986
No 377
>PRK10807 paraquat-inducible protein B; Provisional
Probab=41.63 E-value=3.3e+02 Score=28.10 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=27.4
Q ss_pred cccccCchHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 71 ALNTRMNLFDRLARVVKSYANAILSSFED-PEKILEQAVLEMNDDLVKMRQATA 123 (292)
Q Consensus 71 ~~~~~M~if~Rl~~lira~~n~~ld~~ED-Pe~mLeQ~Iremee~l~kar~alA 123 (292)
.+-+..|-|..|. ..++.+++++.. | +++.+.+++..+..++..+.
T Consensus 407 vIPt~ps~l~~l~----~~~~~il~kin~lp---le~i~~~l~~tL~~~~~tl~ 453 (547)
T PRK10807 407 IIPTVSGGLAQIQ----QKLMEALDKINNLP---LNPMIEQATSTLSESQRTMR 453 (547)
T ss_pred eeecCCCCHHHHH----HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHH
Confidence 3445667776664 577777777764 4 55555556555555555443
No 378
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=41.63 E-value=1.9e+02 Score=28.11 Aligned_cols=14 Identities=7% Similarity=0.026 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 022758 112 NDDLVKMRQATAQV 125 (292)
Q Consensus 112 ee~l~kar~alA~v 125 (292)
+.++.+++..++.+
T Consensus 102 ~~~l~~a~A~l~~A 115 (397)
T PRK15030 102 QATYDSAKGDLAKA 115 (397)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 379
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=41.53 E-value=1.4e+02 Score=30.49 Aligned_cols=77 Identities=6% Similarity=0.126 Sum_probs=54.7
Q ss_pred ccccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 72 LNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (292)
Q Consensus 72 ~~~~M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~ 151 (292)
.+..+||=+++.+.+...++....-+.+-..-|+..|..+..++..+.+.+.. .+.++..++..++..+.+...+..
T Consensus 395 d~~~~Gia~~l~~~l~s~~~~t~g~i~~~~~~l~~~i~~l~~~i~~~~~rl~~---~e~~~~~qf~~m~~~~~~m~sq~~ 471 (483)
T COG1345 395 DGKDTGIAKTLGEGLNSLLAVTGGIITGRTDSLNKQIKSLDKDIKSLDKRLEA---AEERYKTQFNTLDDMMTQMNSQSS 471 (483)
T ss_pred CccccchHHHHhhhhHHHHhhccceeeccccchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888899999998888887667776667777777777777766665543 455666677777766666665544
No 380
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=41.48 E-value=2.3e+02 Score=24.27 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (292)
Q Consensus 106 Q~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~ 148 (292)
..+.+--..+...+..+..+......++.++.+....+..+..
T Consensus 6 ~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 6 KIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444445445555555555566666666666666666555
No 381
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=41.37 E-value=2.6e+02 Score=25.03 Aligned_cols=122 Identities=8% Similarity=0.109 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022758 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (292)
++.+|..+..-..+.-...+.+| |+.|+|.+ .++-.++..+...-..+..++..+.+...+...-...|
T Consensus 78 ~~~ki~~~~~~qa~~d~~~l~e~---L~eY~r~i--------~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~ 146 (224)
T cd07623 78 VEEKIEQLHGEQADTDFYILAEL---LKDYIGLI--------GAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSG 146 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455555444444444444443 33333332 23333444455555666666666666666654445667
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 022758 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL-ESKIQEARSKKDT 213 (292)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~L-e~Ki~e~k~k~~~ 213 (292)
+.|-.-.+-.+....+..+...+..++.. ...++..+... ..++.+++.-...
T Consensus 147 ~~~K~~~~~~ev~~~e~~~~~a~~~fe~i---s~~~k~El~rF~~erv~dfk~~l~~ 200 (224)
T cd07623 147 RTDKLDQAQQEIKEWEAKVDRGQKEFEEI---SKTIKKEIERFEKNRVKDFKDIIIK 200 (224)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76644444444444444444444433333 22333333333 3445555554433
No 382
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=41.22 E-value=2.8e+02 Score=25.34 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCHH
Q 022758 110 EMNDDLVKMRQATAQVLASQKRLENKC-KAAEQASEDWYRKAQLALQKGEED 160 (292)
Q Consensus 110 emee~l~kar~alA~v~A~~k~le~kl-~~~~~~~~~~e~rA~~AL~~G~Ed 160 (292)
+.+.-+.+++...+.+++..+....++ +++..+..+|...+..-++.++++
T Consensus 41 ~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~e 92 (255)
T TIGR03825 41 EFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQE 92 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666555555544333333 344455566666666555555544
No 383
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=41.08 E-value=4.9e+02 Score=28.03 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=46.2
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ 141 (292)
Q Consensus 76 M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~ 141 (292)
..+|+=|.--=-.++..=|-.+|.-...|-..+++.+.++..++.++......-.+|..+++.+..
T Consensus 256 ~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 256 SDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred chhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446655443333333444555666677888888999999999999988888777777777777666
No 384
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=41.01 E-value=2.4e+02 Score=24.42 Aligned_cols=54 Identities=6% Similarity=0.131 Sum_probs=33.1
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (292)
Q Consensus 99 DP-e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (292)
+| ..+|++=-....+.+..+.....++-......+.++..++.++.+.-..|+.
T Consensus 47 kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~ 101 (184)
T CHL00019 47 GVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYS 101 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 3677766666777777777766655555555555555555555555555443
No 385
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=40.97 E-value=1.7e+02 Score=29.36 Aligned_cols=55 Identities=7% Similarity=0.050 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (292)
Q Consensus 128 ~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l 197 (292)
....+..++..++.+++.|+.|... +...|..+...++..+.+++.+-..|...+
T Consensus 407 ~~~~l~~~i~~l~~~i~~~~~rl~~---------------~e~rl~~qF~ame~~~s~mns~~s~L~~q~ 461 (462)
T PRK08032 407 ATDGVNKTLKKLTKQYNAVSDSIDA---------------TIARYKAQFTQLDKLMTSLNSTSSYLTQQF 461 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445666667777777777766655 233466677777777777777777665543
No 386
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=40.92 E-value=1.5e+02 Score=22.13 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (292)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 213 (292)
...+.|..+-......+.+|+.....++..+.+++.+.+.
T Consensus 19 eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 19 EEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443333
No 387
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=40.67 E-value=2.3e+02 Score=24.22 Aligned_cols=116 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQ----------------KRLENKCKA 138 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~EDPe---~mLeQ~Iremee~l~kar~alA~v~A~~----------------k~le~kl~~ 138 (292)
+|+.|..++..+-+.+.+.+++-+ .-.++...+.+..+.+++......+... +..++.++.
T Consensus 37 ~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~ 116 (173)
T PRK13460 37 AWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQ 116 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 139 AEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (292)
Q Consensus 139 ~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~L 193 (292)
.+..+..-.++|...|+..=-+||-.+..+...-.=.-.....-++..=..+.++
T Consensus 117 a~~~ie~e~~~a~~el~~ei~~lA~~~a~kil~~~l~~~~~~~lid~~i~~~~~~ 171 (173)
T PRK13460 117 AVKEIELAKGKALSQLQNQIVEMTITIASKVLEKQLKKEDYKAFIETELAKLGKL 171 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHcccc
No 388
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=40.55 E-value=5e+02 Score=27.98 Aligned_cols=13 Identities=46% Similarity=0.506 Sum_probs=8.0
Q ss_pred HHHHHHHHhcccC
Q 022758 86 VKSYANAILSSFE 98 (292)
Q Consensus 86 ira~~n~~ld~~E 98 (292)
++.+||..+....
T Consensus 12 ~~~WIN~~~~~~~ 24 (766)
T PF10191_consen 12 VKAWINAALKSRS 24 (766)
T ss_pred HHHHHHHHhhccC
Confidence 3566777766644
No 389
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=40.54 E-value=2.6e+02 Score=24.65 Aligned_cols=95 Identities=21% Similarity=0.292 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-HcCC----HHHHHHHHHHHHHHHHHHHH----
Q 022758 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA-------L-QKGE----EDLAREALKRRKSYADNANA---- 178 (292)
Q Consensus 115 l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A-------L-~~G~----EdLAreAL~rk~~~e~~~~~---- 178 (292)
+.+..+..|.+++ .|..++.++...+.+++.+...- . ...+ .|| ..++.+-..-......
T Consensus 7 ~qe~Qq~qa~Lv~---~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dL-e~~l~rLeEEqqR~~~L~qv 82 (182)
T PF15035_consen 7 YQEEQQRQAQLVQ---RLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDL-EEALIRLEEEQQRSEELAQV 82 (182)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccH-HHHHHHHHHHHHhHHHHHHH
Confidence 3444444454443 46777778888888887776221 0 0011 111 2255555554555555
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 179 ---LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (292)
Q Consensus 179 ---l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 213 (292)
|..|+++.....+.|...+..+......++.++..
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ 120 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ 120 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888877776555544
No 390
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=40.36 E-value=1.5e+02 Score=25.05 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=15.2
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHH
Q 022758 95 SSFEDPEKILEQAVLEMNDDLVKMRQA 121 (292)
Q Consensus 95 d~~EDPe~mLeQ~Iremee~l~kar~a 121 (292)
|.+.| +.++--.+||++..|.-.-+.
T Consensus 22 d~lsD-d~LvsmSVReLNr~LrG~~re 47 (135)
T KOG4196|consen 22 DRLSD-DELVSMSVRELNRHLRGLSRE 47 (135)
T ss_pred CCcCH-HHHHHhhHHHHHHHhcCCCHH
Confidence 34444 455666788888766554433
No 391
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=40.17 E-value=2e+02 Score=23.39 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~EDPe---~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (292)
+|..|..++...=+.+.+.+++-+ .-.++.+.+.+..+.+++......+...+ ..--......+.+-...+..=+
T Consensus 26 l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~--~~a~~~~~~~~~~a~~ea~~~~ 103 (140)
T PRK07353 26 FYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAE--AEADKLAAEALAEAQAEAQASK 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (292)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~ 185 (292)
..++.++..+--.-...+..++..+--.+..
T Consensus 104 ~~a~~~i~~e~~~a~~~l~~~v~~la~~~a~ 134 (140)
T PRK07353 104 EKARREIEQQKQAALAQLEQQVDALSRQILE 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 392
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=40.04 E-value=1.4e+02 Score=24.10 Aligned_cols=36 Identities=11% Similarity=0.283 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k 208 (292)
...+..++..+.......++++..+.+...++..++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 79 SSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555444443
No 393
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.01 E-value=1.7e+02 Score=24.87 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLL 200 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~L 200 (292)
+..++.++..+...+..|+..+..|
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 394
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=39.94 E-value=2.2e+02 Score=23.65 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA 150 (292)
.+|+.--....+.+..+......+-......+.++..++.++...-+.|
T Consensus 31 ~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a 79 (156)
T PRK05759 31 KALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQA 79 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544444444444444444444444443333
No 395
>PF13514 AAA_27: AAA domain
Probab=39.86 E-value=5.8e+02 Score=28.56 Aligned_cols=101 Identities=22% Similarity=0.304 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcccCC--HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022758 83 ARVVKSYANAILSSFED--PEKILEQAVLEMNDDLVKMRQA---TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (292)
Q Consensus 83 ~~lira~~n~~ld~~ED--Pe~mLeQ~Iremee~l~kar~a---lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (292)
...|...++.+++.+.- |..-.+..+..+...+..++.. +.........++.++..+...+..++.+...-+...
T Consensus 759 ~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a 838 (1111)
T PF13514_consen 759 LAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLEQA 838 (1111)
T ss_pred HHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555666655442 1111224444555555444433 333344444455555555555555555544333221
Q ss_pred ----CHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 022758 158 ----EEDLAR--EALKRRKSYADNANALKAQL 183 (292)
Q Consensus 158 ----~EdLAr--eAL~rk~~~e~~~~~l~~ql 183 (292)
.+++.. .-..++..+...+..++.++
T Consensus 839 ~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l 870 (1111)
T PF13514_consen 839 GVEDEEELREAEERAEERRELREELEDLERQL 870 (1111)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233322 12233444445555555554
No 396
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=39.68 E-value=2.9e+02 Score=24.96 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ--SAKTATKVSEML 231 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~--~AkAq~~i~~~~ 231 (292)
+-.+.+.++..+..+....+.|+..+.....+|.....+...|++.+. ...|...+....
T Consensus 95 l~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~ 156 (207)
T PF05010_consen 95 LHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVR 156 (207)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555666666666666666666666666666666665533 234444444433
No 397
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=39.67 E-value=1.2e+02 Score=31.87 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=10.6
Q ss_pred CCccccccc-cc-ccccccc
Q 022758 26 SSSSLCMVK-KP-LTTSFFN 43 (292)
Q Consensus 26 ~~~~~~~~~-~~-~~~~~~~ 43 (292)
..|.+|+++ .. ++.+||.
T Consensus 14 n~s~~~~lR~S~~~r~~w~~ 33 (907)
T KOG2264|consen 14 NGSFVPSLRVSAFLRFIWFV 33 (907)
T ss_pred CCCcCeeeeehhhHHHHHHH
Confidence 346667777 22 6666663
No 398
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=39.63 E-value=1.8e+02 Score=22.58 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 175 NANALKAQLDQQKNVVNNLVSNTRLLESK 203 (292)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~K 203 (292)
....|.+.+++......+|+.--.++..+
T Consensus 47 dr~rLa~eLD~~~ar~~~Le~~~~Evs~r 75 (89)
T PF13747_consen 47 DRSRLAQELDQAEARANRLEEANREVSRR 75 (89)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333333
No 399
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=39.49 E-value=44 Score=27.70 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVK 117 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~k 117 (292)
-.+-|.+-++-++|-+++++|.-.+.|+|.++|++.=+.-
T Consensus 84 Pik~~r~WLkenLhvflEkLE~EvreLEQlV~DLE~WLDa 123 (135)
T PF15466_consen 84 PIKAIRNWLKENLHVFLEKLEKEVRELEQLVRDLEEWLDA 123 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999876543
No 400
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=39.36 E-value=5.4e+02 Score=28.06 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQV 125 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v 125 (292)
..-+.+.+..+++.+..+...+...
T Consensus 324 l~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 324 LKSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445554444444444
No 401
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=39.28 E-value=1.6e+02 Score=31.36 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (292)
.-|-++||..+..|...+..-.+.-..+.+.+.+..+++.+-.+.+.+
T Consensus 425 Iplv~~~r~aK~~i~~~~~~~~~a~~ar~r~e~r~~R~~r~~~~~~~~ 472 (695)
T PRK05035 425 IPLVQYYRQAKAEIRAIEQEKKKAEEAKARFEARQARLEREKAAREAR 472 (695)
T ss_pred CcHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999998887776666666666777777777766665555444
No 402
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.88 E-value=2.7e+02 Score=24.47 Aligned_cols=50 Identities=10% Similarity=0.202 Sum_probs=42.7
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 98 EDPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (292)
Q Consensus 98 EDPe-~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e 147 (292)
-||+ .-+..||..+++.|..+.+...+++-....+...+.++-.....|-
T Consensus 12 ~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls 62 (200)
T cd07624 12 RSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWS 62 (200)
T ss_pred CCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3564 6678899999999999999999999999999999998888888875
No 403
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=38.85 E-value=2e+02 Score=26.02 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=32.9
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (292)
Q Consensus 76 M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~ 145 (292)
=||..+|.+++...++.--..+..-...|+..|..+++++..+...+.. .+.++..++..++..+.+
T Consensus 170 ~Gi~~~l~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~---~~~~l~~qf~~me~~i~~ 236 (239)
T PF07195_consen 170 SGIATRLNDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLES---KEERLRKQFSAMESLISQ 236 (239)
T ss_pred ccHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4567776666666553222222233445555555555555555444332 334444555555544443
No 404
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.67 E-value=1.5e+02 Score=21.29 Aligned_cols=43 Identities=9% Similarity=0.203 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
+..++..+......+..++....++...+++++.-...|..=+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666655555554443
No 405
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=38.63 E-value=2e+02 Score=22.83 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA--SEDWYRKAQ-LALQKGEEDLAREALKRRKSYADNANALKAQL 183 (292)
Q Consensus 107 ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~--~~~~e~rA~-~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (292)
.+..+.+++..+...+...-......+.=++++..- -...+.-.- .-+....++.-...-.++..++..+..++.+.
T Consensus 11 ~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~ 90 (110)
T TIGR02338 11 QLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQE 90 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666555555555442 233333333 34555555555544444444444444444444
Q ss_pred HHHHHHHHHHHHHH
Q 022758 184 DQQKNVVNNLVSNT 197 (292)
Q Consensus 184 ~~~~~~v~~Lk~~l 197 (292)
+..+..+..+..++
T Consensus 91 ~~l~~~l~e~q~~l 104 (110)
T TIGR02338 91 ERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 406
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=38.62 E-value=1.1e+02 Score=24.73 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
.+..++.+++.+++.|..++..+...+.+++.-++.|
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666555
No 407
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=38.47 E-value=2.4e+02 Score=23.73 Aligned_cols=21 Identities=14% Similarity=0.223 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQAT 122 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~al 122 (292)
.-.+....+.+..+.+++...
T Consensus 70 ~ea~~~~~e~e~~L~~A~~ea 90 (156)
T CHL00118 70 AKANELTKQYEQELSKARKEA 90 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 408
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=38.42 E-value=4.3e+02 Score=26.63 Aligned_cols=43 Identities=7% Similarity=-0.031 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhcccC----------CHH---HHHHHHHHHHHHHHHHHHHH
Q 022758 79 FDRLARVVKSYANAILSSFE----------DPE---KILEQAVLEMNDDLVKMRQA 121 (292)
Q Consensus 79 f~Rl~~lira~~n~~ld~~E----------DPe---~mLeQ~Iremee~l~kar~a 121 (292)
+..+.++++..+.-.+|... ||+ .+-+-.|.+.|+-+.++-..
T Consensus 183 ~E~l~~Yy~~~V~V~~D~~sGIi~l~V~AF~PedA~~ia~aLL~~sE~~VN~Ls~r 238 (434)
T PRK15178 183 NDDPYRYYLSKVSVAVDIQQGMLRLNVKARSAKQAEFFAQRILSFAEQHVNTVSAR 238 (434)
T ss_pred HHHHHHHHHhceEEeecCCCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666543 674 56666666666666665443
No 409
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.40 E-value=2.2e+02 Score=23.19 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 220 (292)
+..+-+++..+++++...-.++..|+..+..+-..=..++-+-+-|+.+...
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777777666666666666666543
No 410
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=38.27 E-value=1.3e+02 Score=21.86 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 190 VNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 190 v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
++.|...+..|+..|..++..+..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444433
No 411
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.13 E-value=1.4e+02 Score=21.63 Aligned_cols=45 Identities=13% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (292)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~ 219 (292)
....+..++...+.++++++.....|+.+++.++.-.+.+.-.+.
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
No 412
>PRK14143 heat shock protein GrpE; Provisional
Probab=38.01 E-value=3.3e+02 Score=25.13 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
..+..++..++.++..+..++..+..+.+.++.+|.+.
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~ 104 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRT 104 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555566666655555555555444
No 413
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=37.97 E-value=4.6e+02 Score=26.79 Aligned_cols=92 Identities=14% Similarity=0.225 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED---WYRKAQLALQKGEEDLAREALKRRKSY--ADNANALKAQLD 184 (292)
Q Consensus 110 emee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~---~e~rA~~AL~~G~EdLAreAL~rk~~~--e~~~~~l~~ql~ 184 (292)
..++++...+.......+....++.+++..+....+ +-.+++..|..-=+.||-+++.++..- +..-+.+...+.
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~ 143 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLS 143 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444333222221 233444556666678888888876542 233334444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022758 185 QQKNVVNNLVSNTRLLE 201 (292)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le 201 (292)
-+.++++.++.++.++.
T Consensus 144 Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 144 PLREQLDGFRRQVQDSF 160 (475)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 414
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=37.94 E-value=1.8e+02 Score=22.20 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
-...++..++..+..+..|+..+..++.++.+++.+.
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555443
No 415
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=37.68 E-value=1.9e+02 Score=22.39 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022758 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRK 170 (292)
Q Consensus 107 ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~ 170 (292)
.|.+.+..|..++..=+...+ -.. -..+.+.-.+|+.++..|+.+-|+..+..-.
T Consensus 18 ~l~~A~~ai~~A~~~~a~~~A-----p~e----l~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~ 72 (103)
T PF14346_consen 18 ELSDAEAAIQRAEAAGAEQYA-----PVE----LKEAREKLQRAKAALDDGDYERARRLAEQAQ 72 (103)
T ss_pred HHHHHHHHHHHHHHcCCcccc-----HHH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555556555555222211 112 2334444556788888898877766554443
No 416
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=37.53 E-value=1.6e+02 Score=29.73 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=47.5
Q ss_pred chHHHHHHHHHHHHHHH--hcccC--CHH---HHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 022758 77 NLFDRLARVVKSYANAI--LSSFE--DPE---KILEQAVLEMNDDLVK-MRQATAQV-LASQKRLENKCKAAEQASEDWY 147 (292)
Q Consensus 77 ~if~Rl~~lira~~n~~--ld~~E--DPe---~mLeQ~Iremee~l~k-ar~alA~v-~A~~k~le~kl~~~~~~~~~~e 147 (292)
+.++||.+.|.+..+.- |+.++ ||. -|.-+..-+.--+... +.+++-.. -.+.....++.+++++++++-.
T Consensus 61 ~AL~rLl~~~p~~~~~~~~Ls~l~~~dm~~m~mMat~L~l~~~ad~a~s~~kq~ei~td~Q~~LR~k~~~e~q~qi~ka~ 140 (473)
T PRK15362 61 NALKRILDAVPGNHKRPLSLSDFEQTPMDVMSMMATLLILSVFGDNAQSLCQALEIATEVQEALRDKQVKEYQEQIQKAI 140 (473)
T ss_pred HHHHHHHhhccCCCCCCcchHhhcCCChHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888887665554 77777 664 2333333332222222 11221111 1123445677889999999999
Q ss_pred HHHHHHHHcCC
Q 022758 148 RKAQLALQKGE 158 (292)
Q Consensus 148 ~rA~~AL~~G~ 158 (292)
+++..|-+.|=
T Consensus 141 e~adkA~KagI 151 (473)
T PRK15362 141 EQEDKARKAGI 151 (473)
T ss_pred HHHHHHHhccH
Confidence 99888877775
No 417
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=37.45 E-value=3.6e+02 Score=25.45 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 162 AREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 223 (292)
Q Consensus 162 AreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkA 223 (292)
|++........+...+.....+......++.+...+.+.+.++.+++.+....++|...++.
T Consensus 181 a~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 181 AKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEM 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 418
>PHA01750 hypothetical protein
Probab=37.22 E-value=1.2e+02 Score=22.61 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (292)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 212 (292)
+++++.+..++..++-....++.++.+.+.+.+
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 344555555555555555555666666655543
No 419
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=36.96 E-value=4.9e+02 Score=26.82 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~ 219 (292)
|+.-+..++.-.+..-..+.+|+..+..-+..|+-++.+++.|+++..
T Consensus 314 ~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 314 YENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444445555555555556667777777777777777777777776643
No 420
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=36.88 E-value=4.1e+02 Score=25.87 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLAS 128 (292)
Q Consensus 110 emee~l~kar~alA~v~A~ 128 (292)
+++..+.+++..++...+.
T Consensus 96 ~~~~~l~~A~a~l~~a~~~ 114 (390)
T PRK15136 96 DAEQAFEKAKTALANSVRQ 114 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666654443
No 421
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=36.32 E-value=1.4e+02 Score=25.00 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (292)
Q Consensus 167 ~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 216 (292)
.++++...+++.|+.+...++..-..|...+..||..+..-+.+...++.
T Consensus 25 iERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 25 IERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 35566677777777777777777777777777777777666666555443
No 422
>PRK08453 fliD flagellar capping protein; Validated
Probab=36.28 E-value=2.1e+02 Score=30.48 Aligned_cols=69 Identities=9% Similarity=0.112 Sum_probs=33.2
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (292)
Q Consensus 76 M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e 147 (292)
=|||.||..++...+...-..+..-..-|...+..+++++.+....+. ..+.++..++..++..+.++.
T Consensus 598 ~Gi~~rl~~~L~~~i~g~~G~l~~~~~sL~~q~k~L~~q~~~~e~rL~---~ry~rl~~qFsAmDs~IsqmN 666 (673)
T PRK08453 598 EGIFSKFNQVIANLIDGGNAKLKIYEDSLTRDAKSLTKDKENAQELLK---TRYDIMAERFAAYDSQISKAN 666 (673)
T ss_pred CcHHHHHHHHHHHHhcCCCceehhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 367777777666655321112222333455555555555555543332 233444445555555554444
No 423
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.20 E-value=2.5e+02 Score=24.40 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022758 126 LASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (292)
Q Consensus 126 ~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (292)
+..-..+-.++...++..+....++..+.+.
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~ 147 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAESASEA 147 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3334455556666666677676666665433
No 424
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=36.14 E-value=3.9e+02 Score=25.45 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (292)
Q Consensus 106 Q~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA 150 (292)
|-|.+++.++.+++.. +++-.-+++.++....+-..++
T Consensus 18 qKIqelE~QldkLkKE-------~qQrQfQleSlEAaLqKQKqK~ 55 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKE-------RQQRQFQLESLEAALQKQKQKV 55 (307)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHH
Confidence 5677888888887776 3333334444444444443333
No 425
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=36.07 E-value=3.6e+02 Score=25.05 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQ----ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK-------GEEDLAREALKRRK 170 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~----alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~-------G~EdLAreAL~rk~ 170 (292)
++.+...+...+...+... .+....+....++.++..++..+++....+..=..- |.-.-++.+-....
T Consensus 113 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~ 192 (301)
T PF14362_consen 113 KLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLD 192 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHH
Confidence 4444444444444444433 455555555666666666666666655544432222 33344555544444
Q ss_pred HHHHHHHHHHHHHH
Q 022758 171 SYADNANALKAQLD 184 (292)
Q Consensus 171 ~~e~~~~~l~~ql~ 184 (292)
.++.+++.++++++
T Consensus 193 ~~~~~l~~l~~~~~ 206 (301)
T PF14362_consen 193 AAQAELDTLQAQID 206 (301)
T ss_pred HHHHHHHHHHHhHH
Confidence 44444444444433
No 426
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=35.99 E-value=4.7e+02 Score=26.39 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=32.5
Q ss_pred HHcCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 154 LQKGEEDLAREA---LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (292)
Q Consensus 154 L~~G~EdLAreA---L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~ 219 (292)
+.+.+++|+-.. -.++..+.+.-..|...+-....++-.....+..++.+++=...+.+.|.....
T Consensus 202 le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv 270 (447)
T KOG2751|consen 202 LEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNV 270 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444444454332 223333444444444444445555555555556666666555555555555443
No 427
>PF15294 Leu_zip: Leucine zipper
Probab=35.94 E-value=3.9e+02 Score=25.36 Aligned_cols=98 Identities=19% Similarity=0.361 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 022758 100 PEKILEQAVLEMNDDLVKMRQATA-------QVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSY 172 (292)
Q Consensus 100 Pe~mLeQ~Iremee~l~kar~alA-------~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~ 172 (292)
|..+|.-.|+.+.++-.+++..+. .++-.+..++.++.+++...... +|..++.-. .....++
T Consensus 126 ~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~---------~~k~~~~~~-~q~l~dL 195 (278)
T PF15294_consen 126 GSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQ---------KGKKDLSFK-AQDLSDL 195 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hcccccccc-ccchhhH
Confidence 346677777777777777776544 44445555555555555433222 233222221 1233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k 210 (292)
+..++.++.+++ ........+...|+..+.-.+..
T Consensus 196 E~k~a~lK~e~e---k~~~d~~~~~k~L~e~L~~~Khe 230 (278)
T PF15294_consen 196 ENKMAALKSELE---KALQDKESQQKALEETLQSCKHE 230 (278)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554333 22334444444555555444444
No 428
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=35.73 E-value=3e+02 Score=23.94 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 022758 103 ILEQAVLEMNDDLVKMRQATAQV-----LASQKRLENKCKAAEQASEDWY 147 (292)
Q Consensus 103 mLeQ~Iremee~l~kar~alA~v-----~A~~k~le~kl~~~~~~~~~~e 147 (292)
.|--||.|.+..+......+..- .=...++-.++..+...+..|.
T Consensus 41 ~L~~yl~Ei~~~l~~L~~~~~~~~~~~~~~laEkL~~Q~~AL~r~l~t~~ 90 (173)
T PF07445_consen 41 RLSDYLQEIEQTLAQLQQQVEQNRLQQVAFLAEKLVAQIEALQRELATQS 90 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35556666666666666664432 2234455566666666666655
No 429
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=35.48 E-value=4e+02 Score=25.44 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (292)
Q Consensus 105 eQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~ 146 (292)
.-.+.++++.+.+|=.+-|++=-.+..+--+++.+...+.+.
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~ 124 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEEL 124 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Confidence 334444555555544444444444444444444444444433
No 430
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=35.45 E-value=3.6e+02 Score=24.81 Aligned_cols=106 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~EDPe---~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (292)
+|+-|..++...=+.+-+.+++.+ .-.++...+.+..+.+++......+...+.-..+. .+..+++-...|..-.
T Consensus 26 l~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~--~~~il~~A~~ea~~~~ 103 (250)
T PRK14474 26 LYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQ--RQHLLNEAREDVATAR 103 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (292)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~ 185 (292)
...+.++.++-..-...+..++..+--++..
T Consensus 104 ~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~ 134 (250)
T PRK14474 104 DEWLEQLEREKQEFFKALQQQTGQQMVKIIR 134 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 431
>PRK14154 heat shock protein GrpE; Provisional
Probab=35.35 E-value=3.4e+02 Score=24.56 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
+..++.++.+++.+++.+..+.+.++.++.+.
T Consensus 58 ~~el~~le~e~~elkd~~lRl~ADfeNyRKR~ 89 (208)
T PRK14154 58 EGQLTRMERKVDEYKTQYLRAQAEMDNLRKRI 89 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555554443
No 432
>PRK14148 heat shock protein GrpE; Provisional
Probab=34.83 E-value=3e+02 Score=24.62 Aligned_cols=33 Identities=12% Similarity=0.350 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 185 QQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
.++..+..|+..+.+++.++..+.+..+.++-|
T Consensus 44 ~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR 76 (195)
T PRK14148 44 RAKDTIKELEDSCDQFKDEALRAKAEMENIRKR 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444
No 433
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=34.77 E-value=2.7e+02 Score=24.65 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~ 219 (292)
...|......-..+++.|+.+...|+..++...+|++.|.-=..
T Consensus 118 r~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIER 161 (179)
T PF13942_consen 118 RARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIER 161 (179)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33444444455566666777777777777777777777654433
No 434
>PRK11820 hypothetical protein; Provisional
Probab=34.65 E-value=4e+02 Score=25.18 Aligned_cols=140 Identities=24% Similarity=0.276 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH----------------HHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE----------------DLAREA 165 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~E----------------dLAreA 165 (292)
..+...+.++-+++.++|..=...+. .-+..+++.++..+...+..+-..++.-++ -|+.++
T Consensus 129 ~~l~~al~~AL~~l~~~R~~EG~~L~--~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el~~~~d~~Rl~qEv 206 (288)
T PRK11820 129 AALLAALDEALDDLIEMREREGAALK--ADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEELLGELDENRLEQEV 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 56777777777777777776443332 233444444444444433333333333222 233322
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHH
Q 022758 166 --LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAF 243 (292)
Q Consensus 166 --L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~a~~~f 243 (292)
+..|.+..+.+..|...+.+....+..=..-=++|.-=++|+-++.+++-++.+.+....-+- +....+
T Consensus 207 al~adK~DI~EEi~RL~sHl~~f~~~L~~~~~vGrkLDFL~QEm~RE~NTigSKs~~~~is~~vV---------e~K~el 277 (288)
T PRK11820 207 ALLAQKADIAEELDRLKSHLKEFREILKKGGPVGRKLDFLMQELNREANTLGSKSNDAEITNLVV---------ELKVLI 277 (288)
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHhHHHHHHHHccCcHHHHHHHH---------HHHHHH
Confidence 223333333333333333333333322111112455568888888888887776655433221 245689
Q ss_pred HHHHHHHHh
Q 022758 244 EKMEEKVLT 252 (292)
Q Consensus 244 eR~eeki~~ 252 (292)
|+|+|+|.-
T Consensus 278 EkiREQVQN 286 (288)
T PRK11820 278 EQMREQVQN 286 (288)
T ss_pred HHHHHHHhc
Confidence 999998863
No 435
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=34.54 E-value=7.1e+02 Score=27.97 Aligned_cols=46 Identities=24% Similarity=0.410 Sum_probs=26.8
Q ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 93 ILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKA 138 (292)
Q Consensus 93 ~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~ 138 (292)
+.|.+---...|+.-+.|.-..|-+....+|++++.++.+++++-.
T Consensus 863 lad~~~~qs~qln~p~ed~~~~l~~qQe~~a~l~~sQ~el~~~l~~ 908 (1283)
T KOG1916|consen 863 LADSFNEQSQQLNHPMEDLLPQLLAQQETMAQLMASQKELQRQLSN 908 (1283)
T ss_pred HHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333333333344344445555666677788888888887777653
No 436
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=34.42 E-value=3.4e+02 Score=24.20 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=41.1
Q ss_pred CchHHHHHHHHHHHHHHHhcccCC-HH------HHHHHHH------HH-HHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 022758 76 MNLFDRLARVVKSYANAILSSFED-PE------KILEQAV------LE-MNDDLVK----MRQATAQVLASQKRLENKCK 137 (292)
Q Consensus 76 M~if~Rl~~lira~~n~~ld~~ED-Pe------~mLeQ~I------re-mee~l~k----ar~alA~v~A~~k~le~kl~ 137 (292)
+..|+-+..-..+.+..++..+-. |+ .+++.++ .+ |+.-+.. .|..++++-.....+|.+++
T Consensus 10 ~qaWKdmy~aTE~~wak~~~q~m~TEEFSa~IG~vLd~yL~yQKafnE~MekYLe~lNlPSr~DiarvA~lvinlE~kvD 89 (189)
T TIGR02132 10 FQAWKDAYDKTESFWGKAIGDNIKREEFSALMGNVLDLNLFYQKALNDTTGNYLEQVNVPTKEDIANVASLVINLEEKVD 89 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 566777776666666666655443 32 2333222 11 1111111 24556667777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 022758 138 AAEQASEDWYRKAQ 151 (292)
Q Consensus 138 ~~~~~~~~~e~rA~ 151 (292)
.++....+..+.-.
T Consensus 90 ~lee~fdd~~d~l~ 103 (189)
T TIGR02132 90 LIEEFFDDKFDELE 103 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 77766666555444
No 437
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=34.37 E-value=95 Score=21.39 Aligned_cols=15 Identities=7% Similarity=0.253 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQK 187 (292)
Q Consensus 173 e~~~~~l~~ql~~~~ 187 (292)
++.++.+.+++..++
T Consensus 18 Eqkiedid~qIaeLe 32 (46)
T PF08946_consen 18 EQKIEDIDEQIAELE 32 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 344444444443333
No 438
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=34.37 E-value=3.6e+02 Score=25.44 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (292)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e 206 (292)
|.++.++++.+..+......+...+..|++.+.+++.++.+
T Consensus 226 LdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~ 266 (279)
T KOG0837|consen 226 LDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVME 266 (279)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777766666666666666666666666655544
No 439
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=34.33 E-value=13 Score=39.50 Aligned_cols=105 Identities=11% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (292)
Q Consensus 108 Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~ 187 (292)
++|+++++....+.-..-......+++++..++.++.+...... ......-........+++.....++.++.+..
T Consensus 12 F~Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~----~~~~~~~~~~~~~i~~le~~l~~le~~l~e~~ 87 (759)
T PF01496_consen 12 FRDLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLP----EKNDKPDAPKPKEIDELEEELEELEEELRELN 87 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCccc----ccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444444444445555555555555555443333 11111111111144455556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 188 NVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (292)
Q Consensus 188 ~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 216 (292)
+..++|..++.+++.+...++.....+..
T Consensus 88 ~~~e~L~~~~~~L~E~~~~L~~~~~~l~~ 116 (759)
T PF01496_consen 88 ENLEKLEEELNELEEEKNVLEEEIEFLEE 116 (759)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666655555555554
No 440
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=34.26 E-value=2.6e+02 Score=22.82 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=63.6
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022758 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (292)
Q Consensus 95 d~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 174 (292)
+..+|-..+-++.+.++.+.+..-...-| .++.++-+.....++..+...|+.||-.|+.+--.=|+.+-.+.-.
T Consensus 3 ~~~~~~~~~~d~~~ee~~~~~q~~~e~eA-----~kkA~K~lkKN~rEIkRL~~HAe~al~~~Nk~~Y~YAI~KLR~i~k 77 (109)
T PHA02571 3 DESTDVEELTDEEVEELLSELQARNEAEA-----EKKAAKILKKNRREIKRLKKHAEEALFDNNKEQYVYAIKKLRDIYK 77 (109)
T ss_pred chhcchhhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHc
Confidence 34445455555666777777766666655 4566777888899999999999999999999887777776655443
Q ss_pred HH---HHHHHHHHHHHHHHHHH
Q 022758 175 NA---NALKAQLDQQKNVVNNL 193 (292)
Q Consensus 175 ~~---~~l~~ql~~~~~~v~~L 193 (292)
|- +-+...|.+-.+++..+
T Consensus 78 Qp~~de~i~tmW~TSrqqi~di 99 (109)
T PHA02571 78 QPYTDELIETMWETSRQQILDM 99 (109)
T ss_pred CCCcHHHHHHHHHHHHHHHHHH
Confidence 31 23444555555555444
No 441
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=34.25 E-value=2.6e+02 Score=22.93 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 133 ENKCKAAEQASEDWYRKAQLALQ----KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (292)
Q Consensus 133 e~kl~~~~~~~~~~e~rA~~AL~----~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k 208 (292)
++.+..+-+..-+|..-....+. ...+.+....+.....++-.+..++..++.-..+.+.......+.+..|+.++
T Consensus 15 dr~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k 94 (139)
T PF05615_consen 15 DRPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAK 94 (139)
T ss_pred chhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444332221 22344445555555556655555555555555555555555555556666666
Q ss_pred HHHHHHHHHHHHHHH
Q 022758 209 SKKDTLKARAQSAKT 223 (292)
Q Consensus 209 ~k~~~LkAr~~~AkA 223 (292)
.+...|+.+...|+.
T Consensus 95 ~~ie~lk~~L~~ak~ 109 (139)
T PF05615_consen 95 KEIEELKEELEEAKR 109 (139)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666555555544
No 442
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=34.19 E-value=2.9e+02 Score=23.46 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=44.9
Q ss_pred hHHHHHH---HHHHHHHHHhcccC----CHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 78 LFDRLAR---VVKSYANAILSSFE----DPE----KILEQAVLEMNDDL-VKMRQATAQVLASQKRLENKCKAAEQASED 145 (292)
Q Consensus 78 if~Rl~~---lira~~n~~ld~~E----DPe----~mLeQ~Iremee~l-~kar~alA~v~A~~k~le~kl~~~~~~~~~ 145 (292)
|+.||.| +|.|-++-+|+.+| |-+ .-+...|.+..+.+ .+......+.+ ..+..++..+...+..
T Consensus 8 I~sRLfDHrpvIqgEI~~FvkEFE~KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~~L---~~l~~~l~~a~~~~~~ 84 (145)
T PF14942_consen 8 IHSRLFDHRPVIQGEIRYFVKEFEEKRGDREVRVLENLTEMISETNEHILPRCIELMQQNL---EQLLERLQAANSMCSR 84 (145)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 7888875 89999999999999 332 22333444444333 34333333222 2355566666666766
Q ss_pred HHHHHHHHHH
Q 022758 146 WYRKAQLALQ 155 (292)
Q Consensus 146 ~e~rA~~AL~ 155 (292)
+..+....-.
T Consensus 85 l~~~e~~~~~ 94 (145)
T PF14942_consen 85 LQQKEQEKQK 94 (145)
T ss_pred HHHHHHHHhh
Confidence 6666665544
No 443
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=34.03 E-value=3.6e+02 Score=24.45 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHH--HHHH
Q 022758 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK----GEEDLAREALKRR--KSYA 173 (292)
Q Consensus 100 Pe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~----G~EdLAreAL~rk--~~~e 173 (292)
.+.-|...|.+++..+..++..+-.+.......-.+....+.++.++ |+. ...||.|..--=+ ...+
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~L-------LqRK~sWs~~DleRFT~Lyr~dH~~e 105 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNEL-------LQRKHSWSPADLERFTELYRNDHENE 105 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcccCCChHHHHHHHHHHHhhhhhH
Confidence 35667777777777777777777666666665555555555555554 333 3467776542222 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022758 174 DNANALKAQLDQQKNVVNNLVSN 196 (292)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~ 196 (292)
......+..+..++..++.+-.+
T Consensus 106 ~~e~~ak~~l~~aE~~~e~~~~~ 128 (207)
T PF05546_consen 106 QAEEEAKEALEEAEEKVEEAFDD 128 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 444
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=33.96 E-value=3.6e+02 Score=24.37 Aligned_cols=58 Identities=14% Similarity=0.261 Sum_probs=26.6
Q ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 93 ILSSFEDPEKILEQAVLEMNDDLVKMRQAT----AQVLASQKRLENKCKAAEQASEDWYRKA 150 (292)
Q Consensus 93 ~ld~~EDPe~mLeQ~Iremee~l~kar~al----A~v~A~~k~le~kl~~~~~~~~~~e~rA 150 (292)
++|++|+...-.+..-.+....|...+..+ +.+-.....+..+|+..+..+.+..+++
T Consensus 26 lvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI 87 (201)
T PF11172_consen 26 LVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRI 87 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666655444443334444444443332 2233344444555555444444444444
No 445
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=33.82 E-value=2.8e+02 Score=23.09 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
|....++.+..+..-+......+..|...-.....+|++++++-..|.-|.
T Consensus 38 R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~ 88 (141)
T PF13874_consen 38 RVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRL 88 (141)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666777777777777776666677777888877777777764
No 446
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=33.77 E-value=3.8e+02 Score=24.97 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHHHHhHHHHHH
Q 022758 238 SALSAFEKMEEKVLTMESQAD 258 (292)
Q Consensus 238 ~a~~~feR~eeki~~~EA~Ae 258 (292)
....-++|=++.|.++|.+..
T Consensus 236 ~~de~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 236 DTDEDIRREEEEIRELERKKR 256 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777776654
No 447
>PRK15379 pathogenicity island 1 effector protein SopD; Provisional
Probab=33.70 E-value=24 Score=33.31 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=15.9
Q ss_pred cccCchHHHHHHHHHHHH
Q 022758 73 NTRMNLFDRLARVVKSYA 90 (292)
Q Consensus 73 ~~~M~if~Rl~~lira~~ 90 (292)
..+||+|+||++.|++..
T Consensus 31 A~hMGlWDR~KD~FRseK 48 (317)
T PRK15379 31 AIHMGGWDKVQDHFRAEK 48 (317)
T ss_pred hhhhhhHHHHHHHHhhhh
Confidence 468999999999999874
No 448
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=33.49 E-value=5.2e+02 Score=26.08 Aligned_cols=108 Identities=12% Similarity=0.124 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSSF-EDPEKILEQAVLEMNDDLVKMRQATAQVL---------ASQKRLENKCKAAEQASEDWY 147 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~-EDPe~mLeQ~Iremee~l~kar~alA~v~---------A~~k~le~kl~~~~~~~~~~e 147 (292)
|=..|-..-...||.+-+++ +|-..-.+..+.++++.+.+++.++..-- +.-.-.-.-+..++.+..+.+
T Consensus 220 ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ 299 (434)
T PRK15178 220 FAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAK 299 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555554 36677788888888888888887755432 223333344445555444433
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 148 RKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (292)
Q Consensus 148 ~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v 190 (292)
.+-......-.++- -+...+..++..|+++++..+..+
T Consensus 300 aeL~~L~~~~~p~s-----PqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 300 AEYAQLMVNGLDQN-----PLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHhhcCCCC-----CchhHHHHHHHHHHHHHHHHHHHh
Confidence 32222112111111 123344555666666666555554
No 449
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=33.46 E-value=4.3e+02 Score=25.21 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=6.0
Q ss_pred CcccccCchHHHHHHH
Q 022758 70 GALNTRMNLFDRLARV 85 (292)
Q Consensus 70 ~~~~~~M~if~Rl~~l 85 (292)
|.+|. +|+|+++-
T Consensus 73 ~~l~k---lf~k~~~~ 85 (333)
T PF05816_consen 73 GFLGK---LFGKAKNS 85 (333)
T ss_pred hHHHH---hhhhhhhH
Confidence 45554 45444433
No 450
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=33.26 E-value=1.7e+02 Score=22.35 Aligned_cols=36 Identities=19% Similarity=0.416 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 187 KNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (292)
Q Consensus 187 ~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~Ak 222 (292)
+..++++-++.+.|-.++..+....+.+....++|+
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk 59 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAK 59 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
No 451
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=33.22 E-value=3.3e+02 Score=23.68 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022758 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (292)
Q Consensus 111 mee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (292)
|++--......+..+-..+...+....+++..+.++...|..-+..-
T Consensus 60 l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 60 LAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555555555555556666666555555544443
No 452
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=33.18 E-value=6.2e+02 Score=26.90 Aligned_cols=47 Identities=9% Similarity=0.093 Sum_probs=24.5
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 103 ILEQAV-LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (292)
Q Consensus 103 mLeQ~I-remee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (292)
+.+.|| ..++.....+.+++.=+-.+-..++.+++..+..++++..+
T Consensus 249 la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 249 IANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 23444444444445445555555666666666666665554
No 453
>PLN02678 seryl-tRNA synthetase
Probab=33.18 E-value=5.2e+02 Score=26.06 Aligned_cols=23 Identities=0% Similarity=0.011 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022758 128 SQKRLENKCKAAEQASEDWYRKA 150 (292)
Q Consensus 128 ~~k~le~kl~~~~~~~~~~e~rA 150 (292)
.++.+..+++.++.+.....++.
T Consensus 41 ~~r~l~~~~e~lr~erN~~sk~I 63 (448)
T PLN02678 41 EWRQRQFELDSLRKEFNKLNKEV 63 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 454
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=32.95 E-value=2.4e+02 Score=22.01 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
+++.+.....+..+.+.+.++..++++...|.
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555444
No 455
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=32.80 E-value=6.7e+02 Score=27.15 Aligned_cols=43 Identities=19% Similarity=0.161 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 022758 181 AQLDQQKNVVNNLVSNTRLLES----KIQEARSKKDTLKARAQSAKT 223 (292)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~----Ki~e~k~k~~~LkAr~~~AkA 223 (292)
++...+-.+|..|+..|..-+. +=..++.+...|.-|.++|.-
T Consensus 580 ~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~ 626 (961)
T KOG4673|consen 580 ERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAER 626 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555554443332 233455556666666655543
No 456
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.61 E-value=3.5e+02 Score=23.83 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 022758 131 RLENKCKAAEQASEDWYRKAQLALQKGE 158 (292)
Q Consensus 131 ~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (292)
.+..+++.....+.+.+.+...+ ..|+
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i~~~-~~~r 99 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKIEEA-KKGR 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 34444555555555555555554 3344
No 457
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=32.60 E-value=1.6e+02 Score=27.65 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHhcc
Q 022758 78 LFDRLARVVKSYANAILSS 96 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~ 96 (292)
.-.|++-+-+|-++.++-=
T Consensus 30 ~s~rlsh~s~gl~dhlftf 48 (389)
T PF06216_consen 30 FSARLSHVSNGLIDHLFTF 48 (389)
T ss_pred hhhhHHhhhhhhhhhheec
Confidence 3356666655655555443
No 458
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=32.25 E-value=1.7e+02 Score=20.06 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
..+++.+...++++..-.-.....+.+|+..|+++
T Consensus 9 d~qI~~l~kLLDQQQ~L~L~~~k~le~L~~el~E~ 43 (45)
T PF04394_consen 9 DKQIEELQKLLDQQQQLALQDNKKLEELKAELEEY 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777778877777777777777777777763
No 459
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=32.21 E-value=2.9e+02 Score=22.82 Aligned_cols=20 Identities=10% Similarity=0.325 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhHHHHHHHh
Q 022758 241 SAFEKMEEKVLTMESQADSL 260 (292)
Q Consensus 241 ~~feR~eeki~~~EA~AeA~ 260 (292)
....++...+...+.+.+.+
T Consensus 96 ~l~~~L~~~~~e~eeeSe~l 115 (150)
T PF07200_consen 96 ALLARLQAAASEAEEESEEL 115 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554
No 460
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=32.10 E-value=3.2e+02 Score=23.18 Aligned_cols=39 Identities=21% Similarity=0.162 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
..++.-+..+...+..|+..+.....||..++.....+.
T Consensus 93 ~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~ 131 (146)
T PF08702_consen 93 YILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQE 131 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666666655543
No 461
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=32.08 E-value=3e+02 Score=22.93 Aligned_cols=95 Identities=15% Similarity=0.239 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 022758 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (292)
Q Consensus 79 f~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (292)
|.-|.-+.|.++++++.. +-..+.+.-+.|..+|+.+ ..+++.....+++-.+-
T Consensus 30 ~sD~M~vTrr~m~~A~~~-------v~kql~~vs~~l~~tKkhL----------sqRId~vd~klDe~~ei--------- 83 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVAS-------VSKQLEQVSESLSSTKKHL----------SQRIDRVDDKLDEQKEI--------- 83 (126)
T ss_pred hhHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHHHHHHH---------
Confidence 555555666665555443 3444444445555544444 34555555444432211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (292)
Q Consensus 159 EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~ 209 (292)
.+...+++..+...+++....++.+...+..|+.||.+++.
T Consensus 84 ----------~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 84 ----------SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred ----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12234556666666666777777777777777777766543
No 462
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=32.03 E-value=4.6e+02 Score=25.06 Aligned_cols=144 Identities=19% Similarity=0.291 Sum_probs=75.2
Q ss_pred ccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 74 TRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQA------TAQVLASQKRLENKCKAAEQASEDWY 147 (292)
Q Consensus 74 ~~M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~a------lA~v~A~~k~le~kl~~~~~~~~~~e 147 (292)
..+.+=..+.++-.-.-+..+...+ +.-|-|.|-+++..+..++.. +..+.+.-..+..+..++...+..+-
T Consensus 108 ~~~~ler~i~~Le~~~~T~~L~~e~--E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la 185 (294)
T COG1340 108 SIKSLEREIERLEKKQQTSVLTPEE--ERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELA 185 (294)
T ss_pred CHHHHHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555554444333222 355666777777777766643 22233333333333333333333333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 148 RKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (292)
Q Consensus 148 ~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq 224 (292)
++|..-- +++ ..+..+.-.+-..+..|-..+......++.+...+..+...|.++......|.+....++..
T Consensus 186 ~eaqe~h----e~m-~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~ 257 (294)
T COG1340 186 NEAQEYH----EEM-IKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRR 257 (294)
T ss_pred HHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3331110 111 12334444455666666666667777777777777777777777777777766665554443
No 463
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=32.00 E-value=4e+02 Score=24.30 Aligned_cols=7 Identities=29% Similarity=0.335 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 022758 104 LEQAVLE 110 (292)
Q Consensus 104 LeQ~Ire 110 (292)
|+.|+|.
T Consensus 111 L~~Y~r~ 117 (218)
T cd07663 111 LRYYMLN 117 (218)
T ss_pred HHHHHHH
Confidence 4444443
No 464
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=31.97 E-value=2e+02 Score=23.34 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
.+..++..+..+.++|...-..++..+..++..++.+.
T Consensus 54 ~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~ 91 (117)
T COG2919 54 QLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIE 91 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 34444445555566666666666666666666644433
No 465
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=31.95 E-value=3.3e+02 Score=28.03 Aligned_cols=69 Identities=22% Similarity=0.295 Sum_probs=35.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 154 LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (292)
Q Consensus 154 L~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~Ak 222 (292)
|..|.|+=-...+.--.++++.-+.+..++..++..+.+.+.....|.-|+..+++..+..+-+-+.|+
T Consensus 22 l~~g~e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae 90 (604)
T KOG3564|consen 22 LGEGNEDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAE 90 (604)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444445555555555555555555555555555555555555555555544444443
No 466
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=31.86 E-value=7.9e+02 Score=27.70 Aligned_cols=99 Identities=10% Similarity=0.197 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHH
Q 022758 105 EQAVLEMNDDLVKMRQATAQV-------LASQKR--LENKCKAAEQASEDWYRKAQLALQKG--EEDLAREALKRRKSYA 173 (292)
Q Consensus 105 eQ~Iremee~l~kar~alA~v-------~A~~k~--le~kl~~~~~~~~~~e~rA~~AL~~G--~EdLAreAL~rk~~~e 173 (292)
+-+|-|+-.+|.++++.|+.+ |+..+- .+.+++....++++++.+....-..= -.++.---+.-+..+.
T Consensus 403 ~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~ 482 (1041)
T KOG0243|consen 403 KTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLK 482 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345556667777777776543 222222 33344444444444444433221110 0112222222333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 174 DNANALKAQLDQQKNVVNNLVSNTRLLESK 203 (292)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~K 203 (292)
.+...++..++........++..+.+++..
T Consensus 483 ~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 483 EEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555444444555444444444
No 467
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=31.62 E-value=5.2e+02 Score=25.57 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (292)
Q Consensus 109 remee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~ 145 (292)
-.....+......++..-..-..++.++.+.+..+..
T Consensus 295 ~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~ 331 (458)
T COG3206 295 AQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAA 331 (458)
T ss_pred HHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHH
Confidence 3333333343333333333333444444444433333
No 468
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=31.59 E-value=16 Score=38.72 Aligned_cols=55 Identities=22% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 223 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkA 223 (292)
..++..++..++..+.......+.++..+..++..+.+++.+.+.|.+.+..+++
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~ 295 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARA 295 (713)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666667777777777777777766655544
No 469
>PRK14156 heat shock protein GrpE; Provisional
Probab=31.53 E-value=3.6e+02 Score=23.71 Aligned_cols=23 Identities=9% Similarity=-0.047 Sum_probs=12.7
Q ss_pred CcHHHHHhcccCCCcccccccCcC
Q 022758 266 DDLEGKVAFTSFSFSIFAFKFLPS 289 (292)
Q Consensus 266 ~~Le~~fa~Le~~~~i~~~~~~~~ 289 (292)
+.|..-|...|-.. |+..+|=|.
T Consensus 112 k~l~~~L~~~GV~~-i~~~~FDP~ 134 (177)
T PRK14156 112 ESLIQALKEEGVEE-VAVDSFDHN 134 (177)
T ss_pred HHHHHHHHHCCCee-cCCCCCChh
Confidence 45555666555443 555566664
No 470
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=31.51 E-value=6.1e+02 Score=26.32 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=3.7
Q ss_pred cccCchHHH
Q 022758 73 NTRMNLFDR 81 (292)
Q Consensus 73 ~~~M~if~R 81 (292)
|..-+.|.|
T Consensus 150 ~~s~S~~~~ 158 (596)
T KOG4360|consen 150 NESRSAFQR 158 (596)
T ss_pred CcchhhHHH
Confidence 333344444
No 471
>PRK06798 fliD flagellar capping protein; Validated
Probab=31.49 E-value=3.1e+02 Score=27.50 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 125 VLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (292)
Q Consensus 125 v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l 197 (292)
+-.....++.+++.++.++++|+.|-. .+...|..+...++..+.+++.+...|...+
T Consensus 377 i~~r~~~l~~~i~~l~~~~~~~e~rl~---------------~~e~~l~~qf~ale~~ms~lnsQ~s~l~~~~ 434 (440)
T PRK06798 377 IGERSKSIDNRVSKLDLKITDIDTQNK---------------QKQDNIVDKYQKLESTLAALDSQLKTIKAMT 434 (440)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556677777777777777777755 3445666777777777777777776665543
No 472
>PRK01203 prefoldin subunit alpha; Provisional
Probab=31.28 E-value=1.8e+02 Score=24.41 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHhhccCCCcHHHHHhccc
Q 022758 238 SALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKVAFTS 276 (292)
Q Consensus 238 ~a~~~feR~eeki~~~EA~AeA~~eL~~~~Le~~fa~Le 276 (292)
+..+..+.+++++..++.-....... -..|.+++.+|-
T Consensus 84 ~~e~kie~L~~~ie~Le~~i~~K~~~-l~~i~~~~~~l~ 121 (130)
T PRK01203 84 ERERTIERLKENLEDLKDSIQKLNDQ-RKTLVDQYNTVY 121 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 44567777777777777655543221 134555555543
No 473
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=31.27 E-value=8e+02 Score=27.63 Aligned_cols=88 Identities=22% Similarity=0.211 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 022758 136 CKAAEQASEDWYRKAQLALQKGEE-----------DLAREALKRRKSYADNANALKAQLDQQKNVVN-------NLVSNT 197 (292)
Q Consensus 136 l~~~~~~~~~~e~rA~~AL~~G~E-----------dLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~-------~Lk~~l 197 (292)
++++-.+++++......|=.++-- ..=.........++.+++.++.++...++... .|+..+
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456666777777777666555431 12223333334444444444444444433333 444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 198 RLLESKIQEARSKKDTLKARAQSAKT 223 (292)
Q Consensus 198 ~~Le~Ki~e~k~k~~~LkAr~~~AkA 223 (292)
..++.+++..-.....++-....+++
T Consensus 486 ~~~k~~L~~~~~el~~~~ee~~~~~~ 511 (1041)
T KOG0243|consen 486 EKLKSKLQNKNKELESLKEELQQAKA 511 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444444444433333
No 474
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=31.26 E-value=7.2e+02 Score=27.05 Aligned_cols=47 Identities=23% Similarity=0.332 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
+...+..+...++.....+..|...+..|+..+.+-..+...++.|.
T Consensus 376 ~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl 422 (775)
T PF10174_consen 376 LQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERL 422 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444333334444333
No 475
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=31.20 E-value=5.2e+02 Score=25.39 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 022758 241 SAFEKMEEKVLTMESQADS 259 (292)
Q Consensus 241 ~~feR~eeki~~~EA~AeA 259 (292)
..+..+|.||...--+...
T Consensus 201 ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 201 AYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777777764444433
No 476
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=31.10 E-value=3.4e+02 Score=23.27 Aligned_cols=106 Identities=8% Similarity=0.033 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~EDPe---~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (292)
.|+-|..++...-+.+-+.+++.+ .-+++...+.+..|.+++..-..++...+....++ .+....+-+..+...+
T Consensus 25 awkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~--~~ea~~eA~~ea~r~~ 102 (154)
T PRK06568 25 AKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKI--IQEKTKEIEEFLEHKK 102 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (292)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~ 185 (292)
...+++.+.+=-.....+.+++..+--.+..
T Consensus 103 ~~A~~~Ie~Ek~~Al~elr~eva~Lav~iAs 133 (154)
T PRK06568 103 SDAIQLIQNQKSTASKELQDEFCDEVIKLVS 133 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.07 E-value=2.3e+02 Score=22.41 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
..++-...++..++..+..++.+...+..+..++.+++.....+
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 478
>PRK15380 pathogenicity island 1 protein SopD2; Provisional
Probab=30.94 E-value=27 Score=32.76 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=0.0
Q ss_pred ccCchHHHHHHHHHH
Q 022758 74 TRMNLFDRLARVVKS 88 (292)
Q Consensus 74 ~~M~if~Rl~~lira 88 (292)
++||+|+||++.|++
T Consensus 32 ~~MG~WDR~KD~Frs 46 (319)
T PRK15380 32 LYMGVWDRFKDCFRT 46 (319)
T ss_pred hhhchHHHHHHHHhc
No 479
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=30.78 E-value=4.4e+02 Score=24.46 Aligned_cols=111 Identities=10% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (292)
+++.+.....++..++..+..+.+.....+++++..+....+ ...-+..-++.-......+..++.....+..++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~-----g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~~~~ 162 (327)
T TIGR02971 88 AARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRD-----GAVSASDLDSKALKLRTAEEELEEALASRSEQI 162 (327)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 184 DQQKNVVNNLVS-----NTRLLESKIQEARSKKDTLKARAQ 219 (292)
Q Consensus 184 ~~~~~~v~~Lk~-----~l~~Le~Ki~e~k~k~~~LkAr~~ 219 (292)
.+.+..+..+.. ++...+..+..++.++...+.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 163 DGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
No 480
>PRK12705 hypothetical protein; Provisional
Probab=30.72 E-value=6.1e+02 Score=26.09 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQAT-AQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~al-A~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l 179 (292)
.+++++.=++.+....++.-.. ..+...+...+++++..+.+++..+.+ ...+...++.+...+
T Consensus 36 ~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~r---------------l~~~e~~l~~~~~~l 100 (508)
T PRK12705 36 ERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEER---------------LVQKEEQLDARAEKL 100 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHH
Q 022758 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADS 259 (292)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~a~~~feR~eeki~~~EA~AeA 259 (292)
+..-++.......|......++.+ .+-....-.=.+.....+|...+-..+..-....+...+.++++.... ++.-.|
T Consensus 101 ~~~~~~l~~~~~~l~~~~~~~~~~-~~~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~e~~~~~-~a~~~A 178 (508)
T PRK12705 101 DNLENQLEEREKALSARELELEEL-EKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADL-EAERKA 178 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
No 481
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=30.69 E-value=3.7e+02 Score=23.56 Aligned_cols=124 Identities=10% Similarity=0.152 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-
Q 022758 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK- 156 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~- 156 (292)
.+.++.++.....+.....+.+|..-.-.++. ++-.++..+..+-..+..+...+.+...+...+...
T Consensus 90 ~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~-----------svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~ 158 (236)
T PF09325_consen 90 AFEKISELLEEQANQEEETLGEPLREYLRYIE-----------SVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASG 158 (236)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 022758 157 -GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL-ESKIQEARSKKDTLK 215 (292)
Q Consensus 157 -G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~L-e~Ki~e~k~k~~~Lk 215 (292)
++.+-...+..+...++..+...+..++..... ++..+... +.|..+++.-...+.
T Consensus 159 ~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~---~k~E~~rf~~~k~~d~k~~l~~~~ 216 (236)
T PF09325_consen 159 KNRQDKVEQAENEIEEAERRVEQAKDEFEEISEN---IKKELERFEKEKVKDFKSMLEEYA 216 (236)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
No 482
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=30.67 E-value=4e+02 Score=23.88 Aligned_cols=132 Identities=11% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 80 DRLARVVKSYANAILSSFEDP----EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (292)
Q Consensus 80 ~Rl~~lira~~n~~ld~~EDP----e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~ 155 (292)
.++...=....+.+.+.+.+| ...+++.....+..+.++..........-.....+|...-.+++....+-..+-.
T Consensus 70 e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ 149 (236)
T cd07651 70 ESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWG 149 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCc
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 156 ~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
+--+-+-...-.........-..|+..+..+...-......+...=..++++...+
T Consensus 150 ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~R 205 (236)
T cd07651 150 KELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEER 205 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=30.66 E-value=6.1e+02 Score=26.01 Aligned_cols=138 Identities=19% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKN 188 (292)
Q Consensus 109 remee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~ 188 (292)
...+..+.+++...-.+. +.-..+++....+....++.-+..-+.++-++.-.+...+.++-..|....+.+..
T Consensus 21 ~~a~~~l~~Ae~eAe~i~------keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lek 94 (514)
T TIGR03319 21 RIAEKKLGSAEELAKRII------EEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDR 94 (514)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Q 022758 189 VVNNLVSNTRLLESKIQEARSKKDTLKAR-AQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLT 252 (292)
Q Consensus 189 ~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr-~~~AkAq~~i~~~~~~~~~~~a~~~feR~eeki~~ 252 (292)
..+.|...-..|+.+-+++..+...+..+ .+...........+..+..-+...+=+.+-+++..
T Consensus 95 r~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~ 159 (514)
T TIGR03319 95 KMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEE 159 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
No 484
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.24 E-value=8.5e+02 Score=27.58 Aligned_cols=168 Identities=17% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHc
Q 022758 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ-----------ASEDWYRKAQLALQK 156 (292)
Q Consensus 88 a~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~-----------~~~~~e~rA~~AL~~ 156 (292)
++.+.-+..++--..-.+-........+.+.+..+..+-..+...+.+++.-.. .+.+++.-=..|...
T Consensus 299 ~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~ 378 (1141)
T KOG0018|consen 299 SHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKE 378 (1141)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhh
Q ss_pred CCHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q 022758 157 GEEDLA-------------REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK-----ARA 218 (292)
Q Consensus 157 G~EdLA-------------reAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk-----Ar~ 218 (292)
+.++|. ...+.+..++++.+..+..++.........|...+..++.-+.+.+...+.|. +..
T Consensus 379 ~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~ 458 (1141)
T KOG0018|consen 379 ALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEE 458 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhh
Q ss_pred HHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHhHHH
Q 022758 219 QSAKTATKVSEMLGNVNTSSAL-SAFEKMEEKVLTMES 255 (292)
Q Consensus 219 ~~AkAq~~i~~~~~~~~~~~a~-~~feR~eeki~~~EA 255 (292)
..+.....+.+.+..+...++. ..=.|..-+.+..++
T Consensus 459 ~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~ 496 (1141)
T KOG0018|consen 459 EPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAVEA 496 (1141)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHH
No 485
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=30.00 E-value=8.5e+02 Score=27.51 Aligned_cols=153 Identities=19% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH----------------------
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE---------------------- 159 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~E---------------------- 159 (292)
.+++--||-++.++.+=-..+-+....-..++.+++.++.++.+|..-|..|-.--+|
T Consensus 180 Adle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs 259 (1195)
T KOG4643|consen 180 ADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDS 259 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhh
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 022758 160 ----DLAREALKRRKSYADNANALKAQLDQQKNVV--NNLVSNTRLLESKIQEARSKKDTLKAR-----AQSAKTATKVS 228 (292)
Q Consensus 160 ----dLAreAL~rk~~~e~~~~~l~~ql~~~~~~v--~~Lk~~l~~Le~Ki~e~k~k~~~LkAr-----~~~AkAq~~i~ 228 (292)
|-+.++=+--.-+.+.-+-++.|+..++.+. ..+...+-+++.++..|+.++++.+.+ ....+.+.+-.
T Consensus 260 ~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~e 339 (1195)
T KOG4643|consen 260 DFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKE 339 (1195)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHHhHH
Q 022758 229 EMLGNVNTSSALSAFEKMEEKVLTME 254 (292)
Q Consensus 229 ~~~~~~~~~~a~~~feR~eeki~~~E 254 (292)
...+++.....+...+..+..=...+
T Consensus 340 qL~~~~ellq~~se~~E~en~Sl~~e 365 (1195)
T KOG4643|consen 340 QLDGQMELLQIFSENEELENESLQVE 365 (1195)
T ss_pred HhhhhhhHhhhhhcchhhhhhhHHHH
No 486
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=29.90 E-value=8e+02 Score=27.20 Aligned_cols=98 Identities=20% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED--LAREALKRRKSYADNANALKAQLDQQK 187 (292)
Q Consensus 110 emee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~Ed--LAreAL~rk~~~e~~~~~l~~ql~~~~ 187 (292)
..++...+.+..+...-+..+.++.++++.+....+|......++..==-+ +-..-+....+.-+.+..+.+....+.
T Consensus 554 r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~EL~ 633 (984)
T COG4717 554 RIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELT 633 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022758 188 NVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 188 ~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
.++..|.......+.++..+
T Consensus 634 ~q~~~L~ee~~af~~~v~~l 653 (984)
T COG4717 634 HQVARLREEQAAFEERVEGL 653 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHh
No 487
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=29.79 E-value=3.6e+02 Score=28.65 Aligned_cols=69 Identities=12% Similarity=0.187 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (292)
Q Consensus 77 ~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (292)
||..||.+++..++. .-.-+..-...|+..|+++++++......+.. .+.++.+++..++..+.++..+
T Consensus 579 Gla~~l~~~l~~~t~-~~G~i~~r~~~l~~~i~~l~~~i~~~e~rl~~---~e~rl~~QFtaME~~msqmnsq 647 (661)
T PRK06664 579 GVAKMLLEYLSPYTQ-AGGIIYNKVKGLDERIADNNKKIEEYEKKLES---KERKLKGKYLTMDQTVKKMKEQ 647 (661)
T ss_pred cHHHHHHHHHHHHHc-CCCceehHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
No 488
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.78 E-value=4.3e+02 Score=26.66 Aligned_cols=74 Identities=22% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 138 AAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD--NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 138 ~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~--~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
.++.++-...++=+.+++.+++.+=|+.-.-+..+.. -...|+++.+...+..++|++-.--++..|++++.+.
T Consensus 96 ~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl 171 (542)
T KOG0993|consen 96 TYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKL 171 (542)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHH
No 489
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=29.76 E-value=4.4e+02 Score=24.16 Aligned_cols=106 Identities=8% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQ 186 (292)
Q Consensus 107 ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~ 186 (292)
.+.+.-+++..+-.++-.++..+..+=+.+..++..+.+...+...-...|+.|-...+..+...++..+...+. ..
T Consensus 106 ~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~---~f 182 (234)
T cd07665 106 LLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYER---DF 182 (234)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH---HH
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 022758 187 KNVVNNLVSNTRLL-ESKIQEARSKKDTLK 215 (292)
Q Consensus 187 ~~~v~~Lk~~l~~L-e~Ki~e~k~k~~~Lk 215 (292)
+.....++..+... +.|+.+++.-...+.
T Consensus 183 e~is~~ik~El~rFe~er~~Dfk~~v~~fl 212 (234)
T cd07665 183 ERISATVRKEVIRFEKEKSKDFKNHIIKYL 212 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PRK14127 cell division protein GpsB; Provisional
Probab=29.47 E-value=3e+02 Score=22.39 Aligned_cols=43 Identities=7% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
..+..+=+...-..++.+...+..|+..+..|+.++.+++.+.
T Consensus 25 ~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 25 QDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 491
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.29 E-value=4.2e+02 Score=23.79 Aligned_cols=150 Identities=14% Similarity=0.231 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 022758 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (292)
Q Consensus 98 EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (292)
++..+.|.++|..++..+.++-..++.+......+....++..+.+..+-+.=-..|..|=..|| +++....+|-+
T Consensus 3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~la-e~~~~i~d~~q--- 78 (211)
T cd07598 3 DNQTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFA-ECLAALQDYRQ--- 78 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHH-HHHHHHHHHHH---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHH
Q 022758 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQA 257 (292)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~a~~~feR~eeki~~~EA~A 257 (292)
.+--.-....++-|+......+.-...++. ...++.+..+-+.++...-.....+.. .+...|.++......+
T Consensus 79 --~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~---~~~ar~~~~~~~~~leklk~~~~~d~~--~i~eaE~~l~~a~~d~ 151 (211)
T cd07598 79 --AEVERLEAKVVQPLALYGTICKHARDDLKN---TFTARNKELKQLKQLEKLRQKNPSDRQ--IISQAESELQKASVDA 151 (211)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCchhh--HHHHHHHHHHHHHHHH
Q ss_pred H
Q 022758 258 D 258 (292)
Q Consensus 258 e 258 (292)
+
T Consensus 152 ~ 152 (211)
T cd07598 152 N 152 (211)
T ss_pred H
No 492
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=28.85 E-value=2.7e+02 Score=21.31 Aligned_cols=45 Identities=27% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (292)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq 224 (292)
.+-++++...+..|...+.+|+..++.++....--+.....|...
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~r 68 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQR 68 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
No 493
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.82 E-value=6.9e+02 Score=26.09 Aligned_cols=145 Identities=13% Similarity=0.190 Sum_probs=0.0
Q ss_pred cCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 75 RMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (292)
Q Consensus 75 ~M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (292)
.+.++.|+..=+.......-...+... +...+.+++..+.+....+..+-.....++.++++++....+++..-..
T Consensus 180 Gl~~~~~L~~dl~~~~~~~~~~~~~~~--~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~-- 255 (650)
T TIGR03185 180 GLDLIDRLAGDLTNVLRRRKKSELPSS--ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS-- 255 (650)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 155 QKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT---RLLESKIQEARSKKDTLKARAQSAKTATKVSE 229 (292)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l---~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~ 229 (292)
.....+.++..++.++..++.++.+....+.++-... .-+..-+..++.+.....-.....-....+.+
T Consensus 256 ------~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~~~~~~~~~~~l~~ 327 (650)
T TIGR03185 256 ------EGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEE 327 (650)
T ss_pred ------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PRK10722 hypothetical protein; Provisional
Probab=28.79 E-value=2.4e+02 Score=26.26 Aligned_cols=48 Identities=10% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 216 (292)
...+.+.-..|+.-.+.-..+++.|+++...|+.++....+|++.|..
T Consensus 157 ~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTd 204 (247)
T PRK10722 157 QLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTD 204 (247)
T ss_pred HHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=28.76 E-value=5.6e+02 Score=24.99 Aligned_cols=137 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 022758 80 DRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (292)
Q Consensus 80 ~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~E 159 (292)
.|+..........-...+..-...++..|...+.++..+...+.+.....++....++.......++...- +..+.-
T Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~---~~~~~~ 189 (421)
T TIGR03794 113 EEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFKRDRILQQQWREEQ---EKYDAA 189 (421)
T ss_pred HHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhc---ccHHHH
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 160 DLAREAL-KRRKSYADNANALKAQLDQQKNVVNNL-VSNTRLLESKIQEARSKKDTLKARAQ 219 (292)
Q Consensus 160 dLAreAL-~rk~~~e~~~~~l~~ql~~~~~~v~~L-k~~l~~Le~Ki~e~k~k~~~LkAr~~ 219 (292)
+.++... .....-...+.....++......+..+ ...+..++.++.+++.+...+.....
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 190 DKARAIYALQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHhhhhhhhhhhHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 496
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.75 E-value=6.5e+02 Score=25.73 Aligned_cols=120 Identities=17% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCHHHH
Q 022758 86 VKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE---DWYRKAQLALQKGEEDLA 162 (292)
Q Consensus 86 ira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~---~~e~rA~~AL~~G~EdLA 162 (292)
...++-++-..++|-..-|.+..+.|.+++.-....--+ +..-..++..+.....+++ +...+...+|++-..|.-
T Consensus 305 ~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~ 383 (521)
T KOG1937|consen 305 LNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQ 383 (521)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (292)
Q Consensus 163 reAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 212 (292)
|.+ |...+.++.+.+-.++..+.++-...++|+.+++-...+.+
T Consensus 384 rk~------ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 384 RKV------YTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALN 427 (521)
T ss_pred HHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 497
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=28.67 E-value=3e+02 Score=21.91 Aligned_cols=77 Identities=10% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CCcHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN------TSSALS 241 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~------~~~a~~ 241 (292)
+.-.+..+.....+.+.+++..+..|...+..-..-+.+.+.....++.+.. +.++.+...+.+-. .+++.+
T Consensus 26 ~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e--~~~e~ik~~lk~d~Ca~~~~P~~V~d 103 (110)
T PF10828_consen 26 RIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSE--ERRESIKTALKDDPCANTAVPDAVID 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHccCccccCCCCHHHHH
Q ss_pred HHHHH
Q 022758 242 AFEKM 246 (292)
Q Consensus 242 ~feR~ 246 (292)
.|.|+
T Consensus 104 ~L~~~ 108 (110)
T PF10828_consen 104 SLRRL 108 (110)
T ss_pred HHHHh
No 498
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=28.67 E-value=4.3e+02 Score=23.66 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 022758 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (292)
Q Consensus 97 ~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 176 (292)
.++|...|+..|.-..+...++...++.+-...++.-.+++. +.+-.....+.-+|+---. +...
T Consensus 79 ~~~pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~--------EKrkh~~~~aqgDD~t~lL-------EkER 143 (192)
T PF09727_consen 79 YENPLAELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEE--------EKRKHAEDMAQGDDFTNLL-------EKER 143 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHccchHHHHH-------HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
+.|+++++.-..+...+.....++..++.+=+.+...+
T Consensus 144 eRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~ 181 (192)
T PF09727_consen 144 ERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSF 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=28.66 E-value=2.1e+02 Score=24.97 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
++..++|+.+|.+.+..+..|++-|..-+....++|+++
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 500
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=28.54 E-value=8.8e+02 Score=27.25 Aligned_cols=108 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ 181 (292)
..+.+...-+..++.+...+..-..-..+.|+.+.++...++.....--..+..+ +++-.......++.+....+
T Consensus 251 ~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k-----~~~~~ek~~~~~~~v~~~~~ 325 (1072)
T KOG0979|consen 251 NAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAK-----VQEKFEKLKEIEDEVEEKKN 325 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
+++.+....++....+...+.-|.+++..+...
T Consensus 326 ~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 326 KLESLKKAAEKRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Done!