Query 022758
Match_columns 292
No_of_seqs 149 out of 857
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4abm_A Charged multivesicular 97.2 0.0055 1.9E-07 45.9 11.6 74 119-193 5-78 (79)
2 3mq9_A Bone marrow stromal ant 97.1 0.043 1.5E-06 52.8 19.5 121 78-214 349-469 (471)
3 3na7_A HP0958; flagellar bioge 96.3 0.54 1.8E-05 42.0 21.7 145 102-250 35-188 (256)
4 2gd5_A Charged multivesicular 96.3 0.026 9E-07 48.1 10.2 58 99-170 7-68 (179)
5 2fxo_A Myosin heavy chain, car 95.9 0.51 1.7E-05 38.0 17.2 112 104-215 11-124 (129)
6 3oja_B Anopheles plasmodium-re 95.2 0.74 2.5E-05 45.1 17.1 107 111-217 454-566 (597)
7 3na7_A HP0958; flagellar bioge 95.0 1.8 6.2E-05 38.5 21.3 155 88-259 14-168 (256)
8 3vkg_A Dynein heavy chain, cyt 94.4 3.7 0.00013 48.8 22.3 85 171-259 2018-2102(3245)
9 3vkg_A Dynein heavy chain, cyt 94.4 2.8 9.6E-05 49.8 21.1 39 181-219 2014-2052(3245)
10 3frt_A Charged multivesicular 93.6 0.61 2.1E-05 41.1 11.0 37 129-165 23-59 (218)
11 3oja_B Anopheles plasmodium-re 93.6 1.5 5.2E-05 42.9 15.1 114 104-218 454-574 (597)
12 1i84_S Smooth muscle myosin he 92.8 0.73 2.5E-05 49.7 12.2 108 106-214 857-967 (1184)
13 1i84_S Smooth muscle myosin he 91.9 0.95 3.3E-05 48.8 11.7 43 112-154 856-898 (1184)
14 2v71_A Nuclear distribution pr 91.6 6 0.00021 34.0 20.0 30 108-137 19-48 (189)
15 1c1g_A Tropomyosin; contractIl 90.9 6.5 0.00022 33.0 22.2 15 108-122 106-120 (284)
16 3bas_A Myosin heavy chain, str 90.5 4.4 0.00015 30.4 12.4 46 104-149 12-57 (89)
17 3ajw_A Flagellar FLIJ protein; 89.9 6.4 0.00022 31.3 13.2 104 104-213 10-113 (150)
18 1deq_A Fibrinogen (alpha chain 89.4 6.5 0.00022 37.3 13.4 67 97-163 104-170 (390)
19 1m1j_B Fibrinogen beta chain; 88.1 18 0.00062 35.1 16.1 45 101-145 95-139 (464)
20 3o0z_A RHO-associated protein 87.3 12 0.00042 31.5 18.0 114 99-224 6-119 (168)
21 3mq9_A Bone marrow stromal ant 86.6 13 0.00044 35.3 14.1 49 170-221 421-469 (471)
22 3iox_A AGI/II, PA; alpha helix 86.6 22 0.00077 34.7 15.6 92 110-212 6-97 (497)
23 3ghg_A Fibrinogen alpha chain; 86.3 6.7 0.00023 38.7 11.8 99 104-211 55-154 (562)
24 2efr_A General control protein 85.8 14 0.00048 30.7 19.7 49 167-215 70-118 (155)
25 4fm3_A Uncharacterized hypothe 85.7 11 0.00036 29.1 10.6 63 142-205 33-95 (98)
26 3oja_A Leucine-rich immune mol 85.0 27 0.00091 33.2 17.9 43 116-158 356-398 (487)
27 3u59_A Tropomyosin beta chain; 84.7 11 0.00039 28.6 13.4 71 132-207 7-77 (101)
28 3u1c_A Tropomyosin alpha-1 cha 84.3 12 0.00041 28.6 13.4 22 132-153 7-28 (101)
29 3s4r_A Vimentin; alpha-helix, 84.3 12 0.0004 28.4 12.3 83 114-210 10-92 (93)
30 3ol1_A Vimentin; structural ge 84.3 14 0.00046 29.2 15.2 90 102-217 16-105 (119)
31 1l8d_A DNA double-strand break 83.6 5.9 0.0002 30.4 8.4 39 108-146 5-43 (112)
32 1jcd_A Major outer membrane li 83.4 8.2 0.00028 26.3 7.9 44 176-228 6-49 (52)
33 3ghg_A Fibrinogen alpha chain; 82.9 22 0.00076 35.1 13.7 6 268-273 214-219 (562)
34 3mq7_A Bone marrow stromal ant 81.4 18 0.00062 28.6 13.7 82 130-219 28-109 (121)
35 2v4h_A NF-kappa-B essential mo 81.4 18 0.0006 28.4 11.7 44 167-210 62-105 (110)
36 1m1j_C Fibrinogen gamma chain; 81.4 38 0.0013 32.3 15.2 51 166-216 83-133 (409)
37 2jee_A YIIU; FTSZ, septum, coi 80.1 15 0.00052 27.3 9.0 66 87-156 12-77 (81)
38 2dfs_A Myosin-5A; myosin-V, in 79.5 69 0.0023 34.3 17.4 47 166-212 976-1022(1080)
39 1deq_A Fibrinogen (alpha chain 78.6 46 0.0016 31.5 14.7 40 172-211 118-157 (390)
40 3m91_A Proteasome-associated A 78.1 12 0.00041 25.4 7.2 42 173-214 8-49 (51)
41 3ghg_C Fibrinogen gamma chain; 77.5 13 0.00045 35.6 10.1 94 104-216 36-133 (411)
42 3ghg_B Fibrinogen beta chain; 75.9 45 0.0015 32.3 13.4 39 104-142 93-131 (461)
43 3efg_A Protein SLYX homolog; x 74.9 14 0.00049 27.0 7.6 51 171-221 11-61 (78)
44 2i1j_A Moesin; FERM, coiled-co 74.7 2.8 9.7E-05 41.8 4.8 23 72-94 267-292 (575)
45 1zbt_A RF-1, peptide chain rel 74.7 12 0.0004 35.5 8.7 32 73-105 10-41 (371)
46 3oja_A Leucine-rich immune mol 73.8 61 0.0021 30.6 14.4 8 78-85 303-310 (487)
47 1m1j_B Fibrinogen beta chain; 73.7 68 0.0023 31.1 17.5 47 102-148 103-149 (464)
48 3mq7_A Bone marrow stromal ant 70.9 37 0.0013 26.9 13.6 39 168-206 72-110 (121)
49 1ic2_A Tropomyosin alpha chain 70.5 28 0.00096 25.3 12.0 22 132-153 4-25 (81)
50 1lwu_C Fibrinogen gamma chain; 67.4 17 0.00059 33.7 8.0 48 170-217 8-55 (323)
51 1ic2_A Tropomyosin alpha chain 66.7 34 0.0012 24.8 9.8 42 175-216 21-62 (81)
52 3hnw_A Uncharacterized protein 66.5 50 0.0017 26.6 11.4 10 103-112 36-45 (138)
53 2no2_A HIP-I, huntingtin-inter 66.4 43 0.0015 25.9 14.3 31 110-140 12-42 (107)
54 3frt_A Charged multivesicular 66.2 27 0.00093 30.5 8.7 63 98-170 6-68 (218)
55 3ol1_A Vimentin; structural ge 65.7 46 0.0016 26.0 15.5 39 102-140 37-75 (119)
56 3nmd_A CGMP dependent protein 64.9 24 0.00083 25.6 6.7 43 172-214 24-66 (72)
57 1gd2_E Transcription factor PA 64.3 13 0.00046 26.7 5.3 33 178-210 33-65 (70)
58 2v71_A Nuclear distribution pr 64.0 69 0.0023 27.4 21.8 66 85-150 14-79 (189)
59 1m1j_C Fibrinogen gamma chain; 63.7 25 0.00084 33.7 8.6 46 164-209 88-133 (409)
60 2efr_A General control protein 61.7 68 0.0023 26.5 19.8 46 101-146 37-82 (155)
61 1cii_A Colicin IA; bacteriocin 61.4 1.2E+02 0.0043 29.5 17.8 42 237-278 469-516 (602)
62 3hnw_A Uncharacterized protein 60.6 65 0.0022 25.9 14.6 45 77-121 28-76 (138)
63 2yy0_A C-MYC-binding protein; 60.6 19 0.00063 24.5 5.2 27 190-216 21-47 (53)
64 1gd2_E Transcription factor PA 60.2 37 0.0013 24.4 7.0 38 170-207 32-69 (70)
65 2b9c_A Striated-muscle alpha t 59.3 71 0.0024 26.0 16.4 93 114-211 25-117 (147)
66 3hfe_A Potassium voltage-gated 59.0 14 0.00049 22.4 3.8 25 236-260 5-29 (31)
67 3o0z_A RHO-associated protein 58.7 81 0.0028 26.4 16.9 49 167-215 90-138 (168)
68 1lwu_C Fibrinogen gamma chain; 58.6 34 0.0012 31.6 8.3 43 168-210 13-55 (323)
69 4e61_A Protein BIM1; EB1-like 58.3 31 0.0011 26.9 6.7 46 175-220 5-50 (106)
70 2xdj_A Uncharacterized protein 57.9 54 0.0019 24.2 9.1 32 178-209 24-55 (83)
71 3m9b_A Proteasome-associated A 57.4 13 0.00045 33.2 5.1 43 173-215 53-95 (251)
72 3efg_A Protein SLYX homolog; x 57.3 33 0.0011 25.0 6.5 36 172-207 26-61 (78)
73 1jcd_A Major outer membrane li 56.7 43 0.0015 22.7 7.8 30 190-219 6-35 (52)
74 2xdj_A Uncharacterized protein 55.8 59 0.002 24.0 8.8 35 183-217 22-56 (83)
75 1fxk_C Protein (prefoldin); ar 54.7 74 0.0025 24.8 10.5 37 172-208 93-129 (133)
76 3haj_A Human pacsin2 F-BAR; pa 54.3 1.5E+02 0.0052 28.2 17.3 44 110-153 133-176 (486)
77 3trt_A Vimentin; cytoskeleton, 53.9 56 0.0019 23.1 9.8 40 175-214 36-75 (77)
78 2ke4_A CDC42-interacting prote 52.9 73 0.0025 24.2 9.6 29 180-208 61-89 (98)
79 3qne_A Seryl-tRNA synthetase, 52.2 89 0.003 30.4 10.5 30 129-158 42-71 (485)
80 1gmj_A ATPase inhibitor; coile 51.8 72 0.0025 23.8 7.6 26 183-208 53-78 (84)
81 2yy0_A C-MYC-binding protein; 51.8 21 0.00073 24.2 4.3 30 175-204 20-49 (53)
82 1fzc_C Fibrin; blood coagulati 51.6 9.2 0.00031 35.4 3.2 39 166-204 3-41 (319)
83 3fpp_A Macrolide-specific effl 51.1 37 0.0013 30.4 7.2 20 105-124 68-87 (341)
84 4dk0_A Putative MACA; alpha-ha 51.0 22 0.00076 32.2 5.8 17 106-122 70-86 (369)
85 3mud_A DNA repair protein XRCC 50.7 69 0.0024 27.0 8.2 49 94-142 116-164 (175)
86 3nmd_A CGMP dependent protein 50.6 44 0.0015 24.2 6.0 29 172-200 38-66 (72)
87 1m1j_A Fibrinogen alpha subuni 50.3 1.2E+02 0.004 29.5 10.6 55 101-155 106-160 (491)
88 3a7p_A Autophagy protein 16; c 49.2 1.1E+02 0.0038 25.2 9.7 31 187-217 102-132 (152)
89 2dq0_A Seryl-tRNA synthetase; 47.7 1.2E+02 0.0043 28.9 10.7 33 126-158 37-69 (455)
90 2lf0_A Uncharacterized protein 47.4 50 0.0017 26.2 6.3 51 132-182 8-58 (123)
91 3i00_A HIP-I, huntingtin-inter 47.4 1E+02 0.0035 24.3 11.5 47 102-148 15-61 (120)
92 3rkg_A Magnesium transporter M 45.6 88 0.003 27.9 8.6 107 101-208 129-247 (261)
93 2wt7_B Transcription factor MA 45.3 57 0.002 24.6 6.2 36 177-212 51-86 (90)
94 3aco_A Pacsin2, protein kinase 45.0 1.7E+02 0.0059 26.2 12.7 20 240-259 271-290 (350)
95 2wt7_B Transcription factor MA 44.6 56 0.0019 24.6 6.0 37 170-206 51-87 (90)
96 2l5g_A GPS2 protein, G protein 44.5 58 0.002 20.6 5.2 27 188-214 8-34 (38)
97 3swk_A Vimentin; cytoskeleton, 42.9 98 0.0033 22.8 11.2 79 117-214 4-82 (86)
98 3w03_C DNA repair protein XRCC 42.9 78 0.0027 26.9 7.4 51 94-144 133-183 (184)
99 3cvf_A Homer-3, homer protein 42.8 59 0.002 23.9 5.8 39 179-217 11-49 (79)
100 2k48_A Nucleoprotein; viral pr 41.2 1.2E+02 0.0042 23.4 8.8 17 187-203 81-97 (107)
101 1ci6_A Transcription factor AT 40.9 85 0.0029 21.7 6.2 27 178-204 27-53 (63)
102 3fpp_A Macrolide-specific effl 40.3 61 0.0021 28.9 6.9 21 110-130 66-86 (341)
103 3ni0_A Bone marrow stromal ant 39.7 1.2E+02 0.0042 23.0 9.9 26 203-228 68-93 (99)
104 3lay_A Zinc resistance-associa 39.3 1.7E+02 0.0058 24.5 10.7 17 197-213 115-131 (175)
105 3bvo_A CO-chaperone protein HS 39.2 1.8E+02 0.0061 24.7 10.3 48 132-179 153-200 (207)
106 3q8t_A Beclin-1; autophagy, AT 38.9 1.2E+02 0.0042 22.7 15.0 37 104-140 9-45 (96)
107 1g6u_A Domain swapped dimer; d 38.8 47 0.0016 21.4 4.1 25 190-214 22-46 (48)
108 1y4c_A Maltose binding protein 38.2 2.7E+02 0.0091 26.5 12.0 97 101-200 389-491 (494)
109 2i1j_A Moesin; FERM, coiled-co 37.9 44 0.0015 33.1 5.9 50 104-153 340-389 (575)
110 1wle_A Seryl-tRNA synthetase; 37.8 2.3E+02 0.0078 27.6 10.9 19 193-211 128-146 (501)
111 2l5g_B Putative uncharacterize 37.7 82 0.0028 20.4 5.5 26 190-215 11-36 (42)
112 1ci6_A Transcription factor AT 37.5 1E+02 0.0034 21.3 6.3 34 182-215 24-57 (63)
113 3abh_A Pacsin2, protein kinase 37.3 2.1E+02 0.0073 25.0 20.1 93 109-201 139-244 (312)
114 1fzc_C Fibrin; blood coagulati 37.2 21 0.00072 33.0 3.2 44 174-217 4-47 (319)
115 3trt_A Vimentin; cytoskeleton, 36.4 1.1E+02 0.0038 21.5 9.3 29 188-216 42-70 (77)
116 3i2w_A Syndapin, LD46328P; EFC 36.2 2.1E+02 0.0073 24.7 13.8 36 165-200 186-221 (290)
117 3iv1_A Tumor susceptibility ge 36.2 1.3E+02 0.0043 22.1 10.0 49 172-220 16-64 (78)
118 2e7s_A RAB guanine nucleotide 35.8 36 0.0012 27.6 4.0 19 113-131 8-26 (135)
119 2oqq_A Transcription factor HY 34.3 94 0.0032 20.1 5.7 27 187-213 9-35 (42)
120 4dk0_A Putative MACA; alpha-ha 34.2 32 0.0011 31.1 3.9 19 110-128 67-85 (369)
121 3ghg_C Fibrinogen gamma chain; 33.9 3.1E+02 0.011 26.0 12.7 30 173-202 104-133 (411)
122 4fi5_A Nucleoprotein; structur 33.7 1.7E+02 0.0058 22.9 8.3 16 199-214 73-88 (113)
123 1hji_B NUN-protein; bacterioph 33.5 45 0.0015 18.9 2.9 18 140-157 9-26 (26)
124 2fxo_A Myosin heavy chain, car 33.2 1.7E+02 0.0059 22.8 16.3 54 164-217 45-98 (129)
125 4etp_A Kinesin-like protein KA 33.0 1.5E+02 0.005 27.9 8.5 43 172-214 8-50 (403)
126 2pms_C Pneumococcal surface pr 33.0 1.3E+02 0.0045 23.9 6.8 36 131-166 10-45 (125)
127 4ani_A Protein GRPE; chaperone 32.7 2.4E+02 0.0082 24.3 9.8 36 176-211 61-96 (213)
128 1avy_A Fibritin, gpwac M; bact 32.6 1.3E+02 0.0045 21.6 6.0 34 175-208 9-42 (74)
129 1kd8_A GABH AIV, GCN4 acid bas 32.6 83 0.0028 19.6 4.3 25 171-195 5-29 (36)
130 1gk4_A Vimentin; intermediate 32.2 1.4E+02 0.0049 21.6 9.6 28 101-128 28-55 (84)
131 1vcs_A Vesicle transport throu 31.7 1.6E+02 0.0056 22.1 7.4 44 178-221 42-93 (102)
132 1jnm_A Proto-oncogene C-JUN; B 31.1 70 0.0024 21.9 4.4 24 179-202 27-50 (62)
133 1x8y_A Lamin A/C; structural p 30.9 1.6E+02 0.0053 21.6 8.4 17 107-123 36-52 (86)
134 3uo3_A J-type CO-chaperone JAC 30.8 2.3E+02 0.0078 23.5 9.9 71 98-178 99-169 (181)
135 2xz3_A Maltose ABC transporter 30.7 3.3E+02 0.011 25.2 12.0 40 153-192 372-411 (463)
136 1fxk_C Protein (prefoldin); ar 30.3 1.9E+02 0.0064 22.3 8.1 34 168-201 96-129 (133)
137 2x3v_A Syndapin I, protein kin 30.3 2.9E+02 0.0098 24.5 19.3 37 109-145 130-166 (337)
138 2w83_C C-JUN-amino-terminal ki 30.3 1.1E+02 0.0038 22.3 5.4 36 174-209 37-72 (77)
139 2f1m_A Acriflavine resistance 30.2 1.3E+02 0.0046 25.7 7.2 6 96-101 52-57 (277)
140 2zdi_C Prefoldin subunit alpha 29.9 1.3E+02 0.0044 24.0 6.6 37 172-208 103-139 (151)
141 1x79_B RAB GTPase binding effe 29.5 2E+02 0.0069 22.4 13.0 40 165-204 36-75 (112)
142 2gd5_A Charged multivesicular 29.3 2.4E+02 0.0081 23.2 10.2 24 131-154 21-44 (179)
143 2avr_X Adhesion A; antiparalle 29.3 2.1E+02 0.0072 22.5 10.8 30 122-151 4-33 (119)
144 3lss_A Seryl-tRNA synthetase; 29.0 3.9E+02 0.013 25.8 10.8 24 190-213 113-136 (484)
145 1fxk_A Prefoldin; archaeal pro 28.9 1.7E+02 0.0059 21.4 7.1 41 172-212 63-103 (107)
146 2w6a_A ARF GTPase-activating p 28.9 1.5E+02 0.005 20.7 8.6 46 170-215 16-61 (63)
147 3c9i_A Tail needle protein GP2 28.9 2.9E+02 0.0098 24.0 11.2 65 133-216 83-147 (242)
148 4etp_A Kinesin-like protein KA 28.7 2E+02 0.0067 27.0 8.5 9 189-197 32-40 (403)
149 4aq4_A SN-glycerol-3-phosphate 28.1 1.4E+02 0.0048 26.4 7.2 49 73-121 368-416 (419)
150 1t3j_A Mitofusin 1; coiled coi 27.3 1.9E+02 0.0065 21.9 6.6 11 77-87 36-46 (96)
151 3htk_A Structural maintenance 27.3 1.4E+02 0.0048 19.8 8.0 50 101-150 7-56 (60)
152 4fla_A Regulation of nuclear P 27.3 2.5E+02 0.0086 22.8 12.4 46 172-217 84-129 (152)
153 2ic6_A Nucleocapsid protein; h 26.4 1.9E+02 0.0065 21.1 8.3 12 200-211 57-68 (78)
154 2yko_A LINE-1 ORF1P; RNA-bindi 26.0 1.5E+02 0.0052 26.0 6.6 40 170-209 9-48 (233)
155 1nlw_A MAD protein, MAX dimeri 25.7 1.9E+02 0.0065 20.8 6.4 13 142-154 15-27 (80)
156 1nov_D Nodamura virus coat pro 25.5 48 0.0016 21.6 2.4 34 77-111 2-35 (44)
157 2p22_C Protein SRN2; endosome, 25.4 3.1E+02 0.01 23.2 15.4 68 81-149 42-112 (192)
158 3c3f_A Alpha/beta peptide with 25.3 1.2E+02 0.0042 18.6 4.4 20 173-192 7-26 (34)
159 3viq_A SWI5-dependent recombin 25.0 1.8E+02 0.0062 22.9 6.4 45 104-154 12-56 (122)
160 3qne_A Seryl-tRNA synthetase, 25.0 4.8E+02 0.016 25.2 12.7 51 157-207 13-66 (485)
161 4ath_A MITF, microphthalmia-as 24.8 2.1E+02 0.0072 21.1 6.7 42 107-152 40-81 (83)
162 2z2q_B Coat protein gamma; wil 24.6 50 0.0017 21.5 2.4 35 77-112 2-36 (44)
163 3m6j_A Uncharacterized protein 24.4 2.3E+02 0.0078 23.0 6.8 38 61-99 74-111 (145)
164 3q8t_A Beclin-1; autophagy, AT 24.3 2.2E+02 0.0077 21.2 15.4 39 110-148 8-46 (96)
165 2ic9_A Nucleocapsid protein; h 23.8 2.4E+02 0.0082 21.4 8.5 17 199-215 56-72 (96)
166 1nkp_B MAX protein, MYC proto- 23.8 1.5E+02 0.005 21.3 5.3 23 182-204 55-77 (83)
167 2zvf_A Alanyl-tRNA synthetase; 23.5 1.5E+02 0.0052 23.7 6.0 29 185-213 29-57 (171)
168 2l5g_B Putative uncharacterize 23.3 1.6E+02 0.0053 19.1 5.5 25 176-200 11-35 (42)
169 3vp9_A General transcriptional 23.2 2.4E+02 0.0083 21.2 7.1 36 170-205 39-74 (92)
170 3abd_X REV3, HREV3, DNA polyme 23.0 25 0.00085 23.4 0.7 11 40-50 23-33 (52)
171 3m9b_A Proteasome-associated A 23.0 1.3E+02 0.0045 26.7 5.7 31 185-215 58-88 (251)
172 3cve_A Homer protein homolog 1 22.7 2.2E+02 0.0074 20.5 7.6 31 185-215 11-41 (72)
173 3vmx_A Voltage-gated hydrogen 22.7 1.7E+02 0.006 19.4 6.6 35 173-207 3-37 (48)
174 2xnx_M M protein, M1-BC1; cell 22.7 1.4E+02 0.0048 24.4 5.4 35 184-218 69-103 (146)
175 2ovc_A Potassium voltage-gated 22.7 81 0.0028 19.3 3.0 25 238-262 7-31 (33)
176 1fmh_A General control protein 22.4 1.3E+02 0.0045 17.8 4.8 28 115-142 3-30 (33)
177 4fm3_A Uncharacterized hypothe 22.3 2.6E+02 0.0089 21.2 7.4 39 109-156 32-70 (98)
178 3a7p_A Autophagy protein 16; c 22.1 3.3E+02 0.011 22.3 10.7 89 122-224 30-118 (152)
179 1a93_B MAX protein, coiled coi 22.0 1.3E+02 0.0046 18.5 3.9 22 178-199 11-32 (34)
180 1fpo_A HSC20, chaperone protei 22.0 3.2E+02 0.011 22.2 11.8 71 97-174 86-156 (171)
181 1wle_A Seryl-tRNA synthetase; 21.6 5.5E+02 0.019 24.8 10.7 33 125-157 75-107 (501)
182 1m1j_A Fibrinogen alpha subuni 21.4 5.6E+02 0.019 24.8 16.2 36 173-208 117-152 (491)
183 3uun_A Dystrophin; triple heli 21.2 2.4E+02 0.0081 20.3 14.4 61 157-217 33-100 (119)
184 3kin_B Kinesin heavy chain; mo 21.2 1.4E+02 0.0048 23.1 5.0 24 184-207 92-115 (117)
185 2oqq_A Transcription factor HY 21.1 1.7E+02 0.006 18.8 5.7 29 190-218 5-33 (42)
186 3bas_A Myosin heavy chain, str 21.1 2.5E+02 0.0085 20.5 12.1 45 173-217 13-57 (89)
187 2ocy_A RAB guanine nucleotide 21.0 3.5E+02 0.012 22.2 13.5 95 104-202 49-143 (154)
188 3haj_A Human pacsin2 F-BAR; pa 20.6 5.4E+02 0.018 24.3 17.8 19 75-93 75-93 (486)
189 4emc_A Monopolin complex subun 20.6 2.3E+02 0.0078 24.1 6.4 53 177-229 9-61 (190)
190 3jsv_C NF-kappa-B essential mo 20.5 2.8E+02 0.0096 20.9 10.6 38 170-207 43-80 (94)
191 2dq3_A Seryl-tRNA synthetase; 20.5 1.2E+02 0.0043 28.6 5.4 30 128-157 38-67 (425)
192 3ljm_A Coil Ser L9C; de novo d 20.4 1.4E+02 0.0048 17.5 4.5 18 189-206 9-26 (31)
193 2k48_A Nucleoprotein; viral pr 20.4 3E+02 0.01 21.2 10.6 22 149-170 60-81 (107)
194 3dyt_A Sorting nexin-9; 3-heli 20.2 4.9E+02 0.017 23.7 9.4 6 12-17 78-83 (366)
195 1z0k_B FYVE-finger-containing 20.2 1.9E+02 0.0066 20.6 5.0 20 189-208 47-66 (69)
196 1ses_A Seryl-tRNA synthetase; 20.1 5.4E+02 0.018 24.1 9.9 16 132-147 40-55 (421)
No 1
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=97.24 E-value=0.0055 Score=45.92 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 119 RQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (292)
Q Consensus 119 r~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~L 193 (292)
..++..+......|+.+...++..++.-...|+..+ .++-.-|..||.+|+.||.++..+.+++.+++.++..+
T Consensus 5 ~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 5 QEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666677788888888888889999999999 56677999999999999999999999999998888765
No 2
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=97.10 E-value=0.043 Score=52.79 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022758 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (292)
Q Consensus 78 if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (292)
-+..+.+++...+..++..-.+|+..|+.+..++++.|.+.+... +..--...|+++++++++...+.+.+|-.|=.
T Consensus 349 ~~~~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 425 (471)
T 3mq9_A 349 QMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANH-- 425 (471)
T ss_dssp THHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcch--
Confidence 456788888888999998888999999999999999998876554 67777888999999999999999999877521
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
....-.. .|++...+....++.|+..+.++.++|++.+.+.+.+
T Consensus 426 ------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 426 ------TVMALMA-------SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp ------HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111 2333333333445555555555555555555554444
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.34 E-value=0.54 Score=41.99 Aligned_cols=145 Identities=8% Similarity=0.083 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ 181 (292)
.-++..+..++..+..++..+..+-...++++..+++....+.+++.+-.. +...+|=- ....++..+...+..++.
T Consensus 35 ~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~-v~~~kE~~--aL~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 35 DKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE-IKSERELR--SLNIEEDIAKERSNQANR 111 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSSSSHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 445566666677777777777777777777777777777777777776642 33444311 112233334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 022758 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS---------AKTATKVSEMLGNVNTSSALSAFEKMEEKV 250 (292)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~---------AkAq~~i~~~~~~~~~~~a~~~feR~eeki 250 (292)
.+..+...++.++..+..++.++.+.+......++.... +....+-.....+++ .+....++|++...
T Consensus 112 eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~-~~lL~~Yerir~~~ 188 (256)
T 3na7_A 112 EIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTE-PKIYSFYERIRRWA 188 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC
Confidence 444444444444444444444444444444433333221 122223333334443 34567777777643
No 4
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=96.30 E-value=0.026 Score=48.13 Aligned_cols=58 Identities=22% Similarity=0.483 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHH
Q 022758 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED----LAREALKRRK 170 (292)
Q Consensus 99 DPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~Ed----LAreAL~rk~ 170 (292)
||...|...++.++... +.|++++..++.+-.+.....+.|.++|+.+ +|+.++..++
T Consensus 7 ~p~e~lr~~~~~L~~~~--------------r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk 68 (179)
T 2gd5_A 7 PPKELVNEWSLKIRKEM--------------RVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRK 68 (179)
T ss_dssp -CCCHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 56555554444444443 3444455555666666666778889999988 4555555443
No 5
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.93 E-value=0.51 Score=38.03 Aligned_cols=112 Identities=19% Similarity=0.298 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL--ALQKGEEDLAREALKRRKSYADNANALKA 181 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~--AL~~G~EdLAreAL~rk~~~e~~~~~l~~ 181 (292)
-+-.+..+++.+.+++..+.......+.++.++..+..+..++..+... .+-..-++.-.....++..++..+..+..
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999999999988888888887665443 22223355566667777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
.++........|...-..++..+.+++...+.+-
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888777653
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.23 E-value=0.74 Score=45.15 Aligned_cols=107 Identities=15% Similarity=0.230 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 022758 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG---EEDLA---REALKRRKSYADNANALKAQLD 184 (292)
Q Consensus 111 mee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G---~EdLA---reAL~rk~~~e~~~~~l~~ql~ 184 (292)
+++++.+.+..+..+.....+.++.+...+.+++++..........= .+.+- ...-.+.+..+.....++++++
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEAD 533 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 34455566666666666666666666666666665544433100000 01111 1122233333444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 185 QQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
+..+..++++....+++.++++.+.+...++..
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 555555555555556666666666666555544
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.00 E-value=1.8 Score=38.46 Aligned_cols=155 Identities=15% Similarity=0.099 Sum_probs=92.8
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 022758 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK 167 (292)
Q Consensus 88 a~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~ 167 (292)
..++.-++.++.-..-+...|.++++.+..++..+..+-..-..++.++..++..+.....+....-.+-+ -++
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~--~v~---- 87 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS--EIK---- 87 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCS----
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccC----
Confidence 34445566666555566788889999999999999888888888888888888888888777765422210 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKME 247 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~a~~~feR~e 247 (292)
-...+..|..+++.+...+..++..+..+..+++..+.....+..+....+.. +.... ......+..++
T Consensus 88 ----~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~--l~~~~-----~~~~~~~~e~~ 156 (256)
T 3na7_A 88 ----SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL--ALELE-----SLVENEVKNIK 156 (256)
T ss_dssp ----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----HHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----HHHHHHHHHHH
Confidence 23345555566666666666666666555555555555555554444333222 11111 11234556666
Q ss_pred HHHHhHHHHHHH
Q 022758 248 EKVLTMESQADS 259 (292)
Q Consensus 248 eki~~~EA~AeA 259 (292)
..+....++.+.
T Consensus 157 ~e~~~l~~~r~~ 168 (256)
T 3na7_A 157 ETQQIIFKKKED 168 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655555443
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.42 E-value=3.7 Score=48.77 Aligned_cols=85 Identities=14% Similarity=0.177 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 022758 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKV 250 (292)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~~~~a~~~feR~eeki 250 (292)
.+++++...++.+...+..+..+...+.+|+.+++++..+++.|+...+..+.+ +..+..= .++..+.=.|+.+.+
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k--l~rA~~L--i~gL~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK--VDRSIAL--LDNLNSERGRWEQQS 2093 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH--HHhhhhccccHHHHH
Confidence 344455555555555555666666666666666666666666666555443332 2222111 122345667888888
Q ss_pred HhHHHHHHH
Q 022758 251 LTMESQADS 259 (292)
Q Consensus 251 ~~~EA~AeA 259 (292)
...+.+...
T Consensus 2094 ~~l~~~~~~ 2102 (3245)
T 3vkg_A 2094 ENFNTQMST 2102 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 877766554
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.37 E-value=2.8 Score=49.80 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (292)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~ 219 (292)
+.++.++......+..+.+.+.++.++..+...|++..+
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443
No 10
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=93.63 E-value=0.61 Score=41.10 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 022758 129 QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREA 165 (292)
Q Consensus 129 ~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreA 165 (292)
.+.|++++..++.+-.+.....+.|.++|+.+-||-.
T Consensus 23 ~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~aril 59 (218)
T 3frt_A 23 MRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVL 59 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4556667777777788888899999999998876654
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.62 E-value=1.5 Score=42.90 Aligned_cols=114 Identities=12% Similarity=0.081 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE-------DWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~-------~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 176 (292)
+++.+.+.+..+.+++..+.+..+.-...+.++++...... +-.++....+++-.+ .....+.+....++.+
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKE-RQAFKLRETQARRTEA 532 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHh-hhhhhHHHHHHHHHhh
Confidence 33455555666666665555554444444444443333322 000333333332222 3333344555566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
.....+++..+...+.++..++..+.++.+++.+...+++..
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777766665443
No 12
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.79 E-value=0.73 Score=49.75 Aligned_cols=108 Identities=11% Similarity=0.197 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ---KGEEDLAREALKRRKSYADNANALKAQ 182 (292)
Q Consensus 106 Q~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~---~G~EdLAreAL~rk~~~e~~~~~l~~q 182 (292)
..|+++++.+.+++..+..+......++.++..++.+..+...+...... .-.+++ .....++..++.++..++.+
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l-~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR-VRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666655555555555555555555554432221110 000111 11223334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 183 LDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 183 l~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
++..+..+..+...+..++.++.+++.+.+.+
T Consensus 936 lee~ee~l~el~~e~~~le~el~~L~~eleel 967 (1184)
T 1i84_S 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967 (1184)
T ss_dssp HHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 13
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=91.87 E-value=0.95 Score=48.84 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (292)
Q Consensus 112 ee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (292)
+..+.+.+..+......-..++..+.+++.+...++.+...+.
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666666666666665555443
No 14
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.61 E-value=6 Score=34.00 Aligned_cols=30 Identities=10% Similarity=0.252 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 108 VLEMNDDLVKMRQATAQVLASQKRLENKCK 137 (292)
Q Consensus 108 Iremee~l~kar~alA~v~A~~k~le~kl~ 137 (292)
..++.+.+..++..+..-...-+.|+..++
T Consensus 19 ~~~~~q~~~~le~El~EFqesSrELE~ELE 48 (189)
T 2v71_A 19 SMKYKQSFQEARDELVEFQEGSRELEAELE 48 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444444433
No 15
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=90.90 E-value=6.5 Score=33.04 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 022758 108 VLEMNDDLVKMRQAT 122 (292)
Q Consensus 108 Iremee~l~kar~al 122 (292)
+.++...+..+...+
T Consensus 106 ~~~~~~~~~~~~~~l 120 (284)
T 1c1g_A 106 LATALQKLEEAEKAA 120 (284)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 16
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=90.49 E-value=4.4 Score=30.42 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (292)
.+-.+..+++.+.+++..+...-...+.++.++..+..+..++..+
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778999999999999999999999999988888888888777
No 17
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=89.88 E-value=6.4 Score=31.35 Aligned_cols=104 Identities=12% Similarity=0.144 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (292)
|+..+.=.+....++...++.+.......+.++..+.....++..+.......|- . ......+..-+..|...+
T Consensus 10 L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~---~---~~~l~~~~~fi~~L~~~I 83 (150)
T 3ajw_A 10 LETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGI---A---SNRWINYQQFIQTLEKAI 83 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGG---G---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---C---HHHHHHHHHHHHHHHHHH
Confidence 3334444556667777888888888888888888888887777755444333332 1 233345566667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (292)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 213 (292)
..+...+..+...+......+.+...++..
T Consensus 84 ~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~ 113 (150)
T 3ajw_A 84 EQHRLQLTQWTQKVDLALKSWREKKQRLQA 113 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777666666666555543
No 18
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=89.44 E-value=6.5 Score=37.28 Aligned_cols=67 Identities=6% Similarity=0.119 Sum_probs=55.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 022758 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 163 (292)
Q Consensus 97 ~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAr 163 (292)
+.|=+..+.|+-.|++..|.-++.-|-..+.+-+.|+.-++.+..+|+++|..+..++..=.-..++
T Consensus 104 ~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~ 170 (390)
T 1deq_A 104 ANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSR 170 (390)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 4456788899999999999999999999999999999999999999999999996666554444443
No 19
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=88.14 E-value=18 Score=35.14 Aligned_cols=45 Identities=16% Similarity=0.333 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~ 145 (292)
+.-++..|.+|++.+.++......+.-..+.+...++..+.++..
T Consensus 95 q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~e 139 (464)
T 1m1j_B 95 EKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKD 139 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccc
Confidence 333666666777777666555444333334444444444444443
No 20
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.30 E-value=12 Score=31.47 Aligned_cols=114 Identities=12% Similarity=0.147 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Q 022758 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (292)
Q Consensus 99 DPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 178 (292)
|-...|+-.+.|+.+.+..--.+.++..-....+...+..++..+.++.++... .-..+..++..+..
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~------------L~~~k~~Leke~~~ 73 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRI------------LENSKSQTDKDYYQ 73 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 334456666667777766655555555555555555555555555555554433 33445566777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 224 (292)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq 224 (292)
++.++++-...-......+..|+.+|..+..+.+.++.+...+.+.
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e 119 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGE 119 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887777778888888888888888888888887666553
No 21
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.63 E-value=13 Score=35.27 Aligned_cols=49 Identities=22% Similarity=0.197 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (292)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 221 (292)
..+...+-.|+..++.-..+-. ..+++++..|.++..++..+.|..+..
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 421 ATANHTVMALMASLDAEKAQGQ---KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566667766665555422 477777777777777777777665543
No 22
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=86.57 E-value=22 Score=34.73 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (292)
Q Consensus 110 emee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~ 189 (292)
+.+..|......|++|...-..++..|+....+...-. .++++-++.+-+.-...++.|++.++.|++.++..+..
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n----~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAAN----AALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777666666555554444333211 22444444454555555666666666666666655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022758 190 VNNLVSNTRLLESKIQEARSKKD 212 (292)
Q Consensus 190 v~~Lk~~l~~Le~Ki~e~k~k~~ 212 (292)
+.+-+.++..++..+.
T Consensus 82 -------~AeY~~kl~aYe~~~~ 97 (497)
T 3iox_A 82 -------LADYPVKLKAYEDEQT 97 (497)
T ss_dssp -------HHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHH
Confidence 4344444455544443
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.34 E-value=6.7 Score=38.71 Aligned_cols=99 Identities=10% Similarity=0.109 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRK-SYADNANALKAQ 182 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~-~~e~~~~~l~~q 182 (292)
|+..=+|+..-|.++|..+.++....+..+.-+ +...+.|..+...+- +++. ...+.. +++.++..|+..
T Consensus 55 LdkqErDltkrINELKnqLEdlsKnsKdseqy~---k~~~E~Lr~rq~q~~--dNdN----tynE~S~ELRRrIqyLKek 125 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLT---TNIMEILRGDFSSAN--NRDN----TYNRVSEDLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH---HHHHHTTSSHHHHHH--HHHH----HHHHTTHHHHHHHHHHHHH
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHH---HHHHHHHHHHHHhhh--ccch----hHHHHHHHHHHHHHHHHHH
Confidence 333445566666666666665544444444443 333344444433333 1221 112222 345555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 183 LDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 183 l~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
++.+-..+..|+..|+.+..+|+.++.-+
T Consensus 126 VdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 126 VIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555554433
No 24
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=85.85 E-value=14 Score=30.69 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 167 ~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
.+...|+.++..|...+..+....+.....+..|+..|..+..++..-+
T Consensus 70 qrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~K 118 (155)
T 2efr_A 70 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQK 118 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555544444433
No 25
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=85.69 E-value=11 Score=29.12 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 142 ASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (292)
Q Consensus 142 ~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~ 205 (292)
.+.+.-.+|+.|+..++-+.||..+ ++.....++..-+......+..++.|+..+..|+..|-
T Consensus 33 ~A~dKl~~A~~Am~~~~y~~Ar~lA-EqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 33 LAQDKYAAAQIAMTAESYKKARLLA-EQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455567899999999999999764 45667777777777777777777777777777776653
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.04 E-value=27 Score=33.18 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 022758 116 VKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (292)
Q Consensus 116 ~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (292)
...+..-......++.++..+...+....+.+...+..+++=+
T Consensus 356 ~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence 3333333455566667777777777777777777666655544
No 27
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.65 E-value=11 Score=28.63 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 132 le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
++.++..+..+.+.|.++|..+=. -.+.+-.+....+..+..+...+...+..++.+...+.....++.+.
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~-----~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEA-----DKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777766522 12233333333344444444444444444444444444444444333
No 28
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=84.26 E-value=12 Score=28.61 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022758 132 LENKCKAAEQASEDWYRKAQLA 153 (292)
Q Consensus 132 le~kl~~~~~~~~~~e~rA~~A 153 (292)
++.++..+..+.+.|.++|..+
T Consensus 7 IKkKm~~lk~e~e~a~drae~~ 28 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQA 28 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777766654
No 29
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=84.26 E-value=12 Score=28.39 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 114 DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (292)
Q Consensus 114 ~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~L 193 (292)
++..+..-+|..+-..+.||++-..++.++..|..+-.. .-...|+..+..+..+++.....-..+
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~--------------~~~~~ye~~i~~Lr~~i~~~~~ek~~l 75 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKS--------------RLGDLYEEEMRELRRQVDQLTNDKARV 75 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--------------CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677888888888888888888888888764211 112336667777777777766666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022758 194 VSNTRLLESKIQEARSK 210 (292)
Q Consensus 194 k~~l~~Le~Ki~e~k~k 210 (292)
...+..|...+.+++.|
T Consensus 76 ~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 76 EVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 66666666666666554
No 30
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.25 E-value=14 Score=29.16 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ 181 (292)
.+.+.+|.+++.+|..+...-+++. -+++.++..++++..+-+.- + ..+...+..+..+++
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~-------leldn~~~~~edfk~KyE~E-------~-----~~r~~~E~di~~lrK 76 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVE-------VERDNLAEDIMRLREKLQEE-------M-----LQREEAENTLQSFRQ 76 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-------H-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHH-------H-----HHHHHHHHHHHHhhh
Confidence 5677777777777777666655444 45555555555554443321 1 223444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
.++ ...-.-..|+.+++.++.++.-|+..
T Consensus 77 ~lD-------~~~l~r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 77 DVD-------NASLARLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 44444445566666666666666544
No 31
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=83.62 E-value=5.9 Score=30.37 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (292)
Q Consensus 108 Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~ 146 (292)
+.+.++.+.+.+..+..+......++.++..+...+..+
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666666665555556666666666665554
No 32
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=83.41 E-value=8.2 Score=26.32 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVS 228 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~ 228 (292)
+..|..+++++..+|+.|...+..++..++ .+..++++|..++.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~---------~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQ---------AAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhh
Confidence 334444444444444444444443333222 44555556655543
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.91 E-value=22 Score=35.05 Aligned_cols=6 Identities=17% Similarity=0.468 Sum_probs=0.0
Q ss_pred HHHHHh
Q 022758 268 LEGKVA 273 (292)
Q Consensus 268 Le~~fa 273 (292)
++..|+
T Consensus 214 Vp~~fK 219 (562)
T 3ghg_A 214 VPGNFK 219 (562)
T ss_dssp ------
T ss_pred Cchhhh
Confidence 444443
No 34
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.44 E-value=18 Score=28.64 Aligned_cols=82 Identities=13% Similarity=0.161 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 130 KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (292)
Q Consensus 130 k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~ 209 (292)
.-|++++.+.+.-...|+.+|-.+=+.=. +| +..|.+ ....-+.++..++..+..|+..|+....+++.++.
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~-tL-~~SL~~------ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVM-AL-MASLDA------EKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777766655422110 11 111111 11111333445555555555555555555566655
Q ss_pred HHHHHHHHHH
Q 022758 210 KKDTLKARAQ 219 (292)
Q Consensus 210 k~~~LkAr~~ 219 (292)
....+..|..
T Consensus 100 ~~~~~~~r~~ 109 (121)
T 3mq7_A 100 ENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHC
T ss_pred hchhhhhHhh
Confidence 5555555543
No 35
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=81.38 E-value=18 Score=28.42 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (292)
Q Consensus 167 ~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k 210 (292)
.++.-+..++..|...-..-...-+++.....+|+.++..++.+
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 34555555555555555544444444544444444444444433
No 36
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=81.37 E-value=38 Score=32.30 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (292)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 216 (292)
...-+...+++..|+..+......+..|+..+..++.+|+.++.+...|..
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444445666677777777777777777777777777777777666665543
No 37
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.10 E-value=15 Score=27.25 Aligned_cols=66 Identities=12% Similarity=0.260 Sum_probs=54.7
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022758 87 KSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (292)
Q Consensus 87 ra~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (292)
-++|..++| -..+|...|.++++.-..+.+....+......+.++...+..+...|+.+...-|.+
T Consensus 12 E~KIq~avd----tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 12 EAKVQQAID----TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345554444 456788899999999999999999999999999999999999999999998876543
No 38
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.52 E-value=69 Score=34.29 Aligned_cols=47 Identities=6% Similarity=0.187 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (292)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 212 (292)
..++...++.+..++..++.++..+.++......++.++++++..+.
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~ 1022 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666666666665555555555555555544333
No 39
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=78.64 E-value=46 Score=31.53 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
++.++..|+..++.+=..+..|+..|+.+..+|+.++..+
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544455555555555555555555554
No 40
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=78.09 E-value=12 Score=25.37 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
+.+...++.++..+.....+|...+.....+|..++.+.+.|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777888888888888888888888888777776654
No 41
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=77.55 E-value=13 Score=35.56 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH----HHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR----EALKRRKSYADNANAL 179 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAr----eAL~rk~~~e~~~~~l 179 (292)
++.-|.+|+..|.++-.....+-..-+.++..+.. ++. ...++++.+- .-+.++..++..+...
T Consensus 36 V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~-----------~q~-~~~~n~~~~~q~Skkml~~~~~~~~~~~~~ 103 (411)
T 3ghg_C 36 VDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNP-----------DES-SKPNMIDAATLKSRKMLEEIMKYEASILTH 103 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-----------TTC-CCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcc-----------ccC-CCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555666666666655544333322222222221 111 2233344432 2455555554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (292)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 216 (292)
..++. .|+..+.....+|.+++.+...|..
T Consensus 104 ~~~i~-------~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 104 DSSIR-------YLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 4444444445555555555444443
No 42
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=75.88 E-value=45 Score=32.34 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~ 142 (292)
++.-|.+|+..|.++......+-..-+.++..+...+..
T Consensus 93 V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~ 131 (461)
T 3ghg_B 93 IRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQ 131 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCC
Confidence 556666777777776666555444444444444444333
No 43
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=74.89 E-value=14 Score=27.01 Aligned_cols=51 Identities=10% Similarity=-0.011 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (292)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 221 (292)
.+++++..|+..+.-++..++.|..-+.+-...|..++.+...|..|....
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777777777777777777777777777776665443
No 44
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=74.73 E-value=2.8 Score=41.77 Aligned_cols=23 Identities=4% Similarity=-0.025 Sum_probs=14.5
Q ss_pred ccccCc---hHHHHHHHHHHHHHHHh
Q 022758 72 LNTRMN---LFDRLARVVKSYANAIL 94 (292)
Q Consensus 72 ~~~~M~---if~Rl~~lira~~n~~l 94 (292)
++-+|+ +-+.|+.++.++-.-..
T Consensus 267 l~F~t~~~~~ak~i~~lc~~~H~ff~ 292 (575)
T 2i1j_A 267 FVFFAPRVRVNKRILALCMGNHELYM 292 (575)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeCCchhHHHHHHHHHHHHHHHH
Confidence 444454 35678888888766443
No 45
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=74.72 E-value=12 Score=35.50 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=15.5
Q ss_pred cccCchHHHHHHHHHHHHHHHhcccCCHHHHHH
Q 022758 73 NTRMNLFDRLARVVKSYANAILSSFEDPEKILE 105 (292)
Q Consensus 73 ~~~M~if~Rl~~lira~~n~~ld~~EDPe~mLe 105 (292)
-++|+|+.++..+ ...+.++-..+.||.-.-|
T Consensus 10 ~~~~~~~~~l~~~-~~r~~el~~~l~~p~~~~d 41 (371)
T 1zbt_A 10 HHHMNIYDQLQAV-EDRYEELGELLSDPDVVSD 41 (371)
T ss_dssp -CCCCHHHHHHHH-HHHHHHC------------
T ss_pred hhhhhHHhhHHHH-HHHHHHHHHHhcCCcchhC
Confidence 3679999999865 4677888888888865444
No 46
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.75 E-value=61 Score=30.59 Aligned_cols=8 Identities=38% Similarity=0.563 Sum_probs=3.7
Q ss_pred hHHHHHHH
Q 022758 78 LFDRLARV 85 (292)
Q Consensus 78 if~Rl~~l 85 (292)
+..|+..+
T Consensus 303 ~~~~l~~~ 310 (487)
T 3oja_A 303 FADRLIAL 310 (487)
T ss_dssp HHHHHHHH
T ss_pred hhhHHHHH
Confidence 33555444
No 47
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=73.70 E-value=68 Score=31.11 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~ 148 (292)
..|+..+.++.+....+...+-.+....+..+.++......+.+...
T Consensus 103 qeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~ 149 (464)
T 1m1j_B 103 RDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNT 149 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 33555555555555555555555555555555555555555555543
No 48
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=70.93 E-value=37 Score=26.87 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e 206 (292)
+.+.++..+..|.+.+..+...+++|+.....+..+|..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 355556666666666666666666666666555555543
No 49
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=70.47 E-value=28 Score=25.30 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022758 132 LENKCKAAEQASEDWYRKAQLA 153 (292)
Q Consensus 132 le~kl~~~~~~~~~~e~rA~~A 153 (292)
+..++..+..+.+.|.+++..+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~ 25 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQA 25 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666665554
No 50
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=67.37 E-value=17 Score=33.65 Aligned_cols=48 Identities=6% Similarity=0.063 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
..+.+++..|+..+..+..++..|+..+..++.+|.+++.+...|..+
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666667777777777777777776666665543
No 51
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=66.75 E-value=34 Score=24.83 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (292)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 216 (292)
++..++..+...+....++...+..|..||..+...++.+.-
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee 62 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444443333
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=66.53 E-value=50 Score=26.64 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 022758 103 ILEQAVLEMN 112 (292)
Q Consensus 103 mLeQ~Ireme 112 (292)
.||.-|+++.
T Consensus 36 ~vd~km~ei~ 45 (138)
T 3hnw_A 36 YINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3444455554
No 53
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=66.42 E-value=43 Score=25.89 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAE 140 (292)
Q Consensus 110 emee~l~kar~alA~v~A~~k~le~kl~~~~ 140 (292)
|...+|...+++-..+-...+.|+.++.++.
T Consensus 12 E~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 12 EVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665554
No 54
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=66.15 E-value=27 Score=30.46 Aligned_cols=63 Identities=14% Similarity=0.313 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022758 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRK 170 (292)
Q Consensus 98 EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~ 170 (292)
.||..++...=|.++....++.+.+..+-..++.++.+++.+.+.-+.- -|+ -+|++++..++
T Consensus 6 ~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~--~ar--------ilAkelVR~Rk 68 (218)
T 3frt_A 6 KPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKD--VCI--------VLAKEMIRSRK 68 (218)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH--HHH--------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHH--------HHHHHHHHHHH
Confidence 3677666666666666666666666666666666666666555443321 122 38888866554
No 55
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.69 E-value=46 Score=25.99 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAE 140 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~ 140 (292)
.-|.-.|..+...+...+.-.-.-++.+..++..+..+.
T Consensus 37 a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lr 75 (119)
T 3ol1_A 37 ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFR 75 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 345555556666666665554444444444444433333
No 56
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=64.92 E-value=24 Score=25.58 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
++..+..-..++.+....++.|+..+.+.+..|.+++.+.+-+
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444455555555555555555555555555443
No 57
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=64.29 E-value=13 Score=26.73 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (292)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k 210 (292)
.|+.++..++.....+......|...|..+..+
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333443333
No 58
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=63.98 E-value=69 Score=27.36 Aligned_cols=66 Identities=12% Similarity=0.051 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 85 VVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (292)
Q Consensus 85 lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA 150 (292)
+++..++...+.+++-+.-|+.+...-.+--.++...|.+.-...+.+..++..+..++..|..+.
T Consensus 14 ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 14 YWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555444444444443333344444444444555555556666666666666544
No 59
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=63.71 E-value=25 Score=33.65 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 164 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (292)
Q Consensus 164 eAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~ 209 (292)
..+.++..++..+...+.++..++..+..+...+..|+.+|.++..
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555543
No 60
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=61.69 E-value=68 Score=26.51 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~ 146 (292)
....+..|.++++.|.-+-..+-..-........+-+.++.++..+
T Consensus 37 ae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L 82 (155)
T 2efr_A 37 AELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVL 82 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 3333444444444444433333333333333333333333333333
No 61
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=61.41 E-value=1.2e+02 Score=29.50 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHH------HhHHHHHHHhhccCCCcHHHHHhcccCC
Q 022758 237 SSALSAFEKMEEKV------LTMESQADSLNQLTTDDLEGKVAFTSFS 278 (292)
Q Consensus 237 ~~a~~~feR~eeki------~~~EA~AeA~~eL~~~~Le~~fa~Le~~ 278 (292)
++|..+|+++..-. ...+|-+.|+..+..+++...|..+++.
T Consensus 469 DDALaSfEKyk~NlnkKfnakDR~AIvNALkSvDa~dmAkNL~kfSKa 516 (602)
T 1cii_A 469 EEALKTYEKYRADINKKINAKDRAAIAAALESVKLSDISSNLNRFSRG 516 (602)
T ss_dssp HHHHHHHHHTHHHHTTSSCSHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChhhhcchhhHHHHHHHHHHcCHHHHHHHHHHHHhh
Confidence 67888899888855 3567777888888778888888887664
No 62
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.59 E-value=65 Score=25.94 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHHHHHHHHH
Q 022758 77 NLFDRLARVVKSYANAILSS----FEDPEKILEQAVLEMNDDLVKMRQA 121 (292)
Q Consensus 77 ~if~Rl~~lira~~n~~ld~----~EDPe~mLeQ~Iremee~l~kar~a 121 (292)
.-+.++..+|-..+.++-.. .-+..++.=-.=-.+-+++-+++..
T Consensus 28 e~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~ 76 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKM 76 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777633 2234433333333444444444443
No 63
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=60.55 E-value=19 Score=24.49 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 190 VNNLVSNTRLLESKIQEARSKKDTLKA 216 (292)
Q Consensus 190 v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 216 (292)
++.|+.....|+.|+.+++.+.+.|++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 64
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=60.16 E-value=37 Score=24.36 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
.+++.++..|+.....+......|+..+..|..++..+
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555555555555666666666666666665543
No 65
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=59.31 E-value=71 Score=26.00 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 114 DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (292)
Q Consensus 114 ~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~L 193 (292)
.|..+....-..-...+.++.+-......+..++.+.+.|.. .|..+-.+.......+..++..++......+..
T Consensus 25 kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~-----~aeeadrKyeE~~RKl~~~E~dLeraeeRae~a 99 (147)
T 2b9c_A 25 KLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKH-----IAEDADRKYEEVARKLVIIESDLERAEERAELS 99 (147)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445667777777777777777777776653 444554444445555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022758 194 VSNTRLLESKIQEARSKK 211 (292)
Q Consensus 194 k~~l~~Le~Ki~e~k~k~ 211 (292)
...+..|+..|..+-..+
T Consensus 100 E~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 100 EGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555444443333
No 66
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=59.05 E-value=14 Score=22.37 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=20.4
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHh
Q 022758 236 TSSALSAFEKMEEKVLTMESQADSL 260 (292)
Q Consensus 236 ~~~a~~~feR~eeki~~~EA~AeA~ 260 (292)
.....+.|.|+|+|+-.|+-..+.+
T Consensus 5 ~nTIGaRLnRvE~k~t~MD~kL~~i 29 (31)
T 3hfe_A 5 SNTIGARLNRVEDKVTQLDQRLALI 29 (31)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999877765
No 67
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=58.72 E-value=81 Score=26.45 Aligned_cols=49 Identities=8% Similarity=0.207 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 167 ~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
..+.+++.++..|...++.......++...-+.|..+|..++-+...+.
T Consensus 90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445556666666666666666666666666666666666665554444
No 68
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=58.58 E-value=34 Score=31.65 Aligned_cols=43 Identities=9% Similarity=0.066 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k 210 (292)
++..++..+...+.++..++..+..++..+.+|+.+|.+++.+
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444555555554444443
No 69
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=58.33 E-value=31 Score=26.86 Aligned_cols=46 Identities=9% Similarity=0.208 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (292)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 220 (292)
.+..+++++.+.+.++..|...+..|+..++.++.+|+-+=.+.+-
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777778888888888888888888888888776655443
No 70
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=57.87 E-value=54 Score=24.20 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (292)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~ 209 (292)
.+..++++++..+..|+..+.++..+++.++.
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 71
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=57.37 E-value=13 Score=33.23 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
+.++..++.+++.+..+...|+..+..++.+|..++.+.+.|+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455667777777777777777777777777777777776654
No 72
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=57.34 E-value=33 Score=25.04 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
.++.++.|-..+..+...++.|...++.|..++.++
T Consensus 26 qE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 26 QEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444445555555555554444444443
No 73
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=56.71 E-value=43 Score=22.68 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 190 VNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (292)
Q Consensus 190 v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~ 219 (292)
+++|..++..|-.|+..+......++.-.+
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555554444444333
No 74
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=55.78 E-value=59 Score=23.99 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 183 LDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 183 l~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
+-++..+++.|...+..|.-.+++...+.+.++.+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555544443
No 75
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=54.68 E-value=74 Score=24.76 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k 208 (292)
++.++..++..++..+..+..++.++..+...++++.
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556666666666666666666666666665554
No 76
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=54.28 E-value=1.5e+02 Score=28.24 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (292)
Q Consensus 110 emee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A 153 (292)
++++.+.++.+.+......-....++|...-.+.+....+...|
T Consensus 133 ~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a 176 (486)
T 3haj_A 133 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANS 176 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666666666666666555555555554
No 77
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=53.88 E-value=56 Score=23.14 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
+++.+..+.......+...+..+.+|...|+.++.+++.+
T Consensus 36 k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 36 KFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444544444444444444443
No 78
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=52.95 E-value=73 Score=24.20 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 180 KAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (292)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k 208 (292)
+.++......++.|+.++.+++.-+.++.
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666666666666666666555553
No 79
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=52.23 E-value=89 Score=30.44 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 022758 129 QKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (292)
Q Consensus 129 ~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (292)
++.+..++++++.+.....++.-.+...|+
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~ 71 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKE 71 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 444444455555555555554444444554
No 80
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=51.75 E-value=72 Score=23.75 Aligned_cols=26 Identities=8% Similarity=0.225 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 183 LDQQKNVVNNLVSNTRLLESKIQEAR 208 (292)
Q Consensus 183 l~~~~~~v~~Lk~~l~~Le~Ki~e~k 208 (292)
++.....++.|...+...+.+|.+++
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444443
No 81
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.75 E-value=21 Score=24.16 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 175 NANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (292)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki 204 (292)
.++.|+.+.+.++..+..|+..+.++++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544444444444444444443
No 82
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=51.64 E-value=9.2 Score=35.44 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (292)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki 204 (292)
|.+...+|..+..++.++..++..+..++.++.+|+.+|
T Consensus 3 ~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i 41 (319)
T 1fzc_C 3 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKV 41 (319)
T ss_dssp -------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555444444444444444444333333
No 83
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=51.05 E-value=37 Score=30.35 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022758 105 EQAVLEMNDDLVKMRQATAQ 124 (292)
Q Consensus 105 eQ~Iremee~l~kar~alA~ 124 (292)
+..+.+++.++..++..+..
T Consensus 68 ~~~~~~~~a~l~~~~a~l~~ 87 (341)
T 3fpp_A 68 ENQIKEVEATLMELRAQRQQ 87 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444444433
No 84
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=50.98 E-value=22 Score=32.18 Aligned_cols=17 Identities=6% Similarity=0.048 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022758 106 QAVLEMNDDLVKMRQAT 122 (292)
Q Consensus 106 Q~Iremee~l~kar~al 122 (292)
..+...+.++..++..+
T Consensus 70 ~~l~~~~a~l~~~~a~l 86 (369)
T 4dk0_A 70 NTLNTRKAALASYQAQL 86 (369)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 85
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=50.69 E-value=69 Score=27.04 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=35.9
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (292)
Q Consensus 94 ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~ 142 (292)
|..+++|..++.+.|...+..+.+.+..+......-...+.++..+...
T Consensus 116 Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 116 LEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999888888888776665555555555444444
No 86
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.63 E-value=44 Score=24.19 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLL 200 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~L 200 (292)
-+..+..++..+++....+..|+..+.++
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555544443
No 87
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=50.30 E-value=1.2e+02 Score=29.50 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~ 155 (292)
+..+.|+-.+++..+.-++.-|...+.+-+.|..-++.+..+|.++|.-+...++
T Consensus 106 dn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~ 160 (491)
T 1m1j_A 106 DENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666655555555555555555555555555555554444
No 88
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=49.24 E-value=1.1e+02 Score=25.19 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 187 KNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 187 ~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
...+..|.-.+..++.++..++.+=..|..|
T Consensus 102 ~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455555555555555555
No 89
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=47.72 E-value=1.2e+02 Score=28.93 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 022758 126 LASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (292)
Q Consensus 126 ~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~ 158 (292)
-..++.+..+++.++.+.....++...+...|+
T Consensus 37 ~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~ 69 (455)
T 2dq0_A 37 DTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE 69 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 334555555666666666666666555555554
No 90
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=47.43 E-value=50 Score=26.20 Aligned_cols=51 Identities=12% Similarity=0.016 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQ 182 (292)
Q Consensus 132 le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~q 182 (292)
+..++..+....+....+--.|...||.++..+...++..+..+++.++..
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888888888888899999888777766666555555555443
No 91
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=47.37 E-value=1e+02 Score=24.27 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (292)
Q Consensus 102 ~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~ 148 (292)
.+|++.-++++.--.....-....-..-.+++.++..++.+.+....
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQH 61 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333333333333333333444455555544444433
No 92
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=45.58 E-value=88 Score=27.90 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH------HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQ------KRLE------NKCKAAEQASEDWYRKAQLALQKGEEDLAREALKR 168 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~------k~le------~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~r 168 (292)
+.+|...+..++.++...+..+..+...- ..++ +++.....++....+-. .=+=..|||+|.-.|.+
T Consensus 129 Ea~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~l-eelLddDeDm~~myLT~ 207 (261)
T 3rkg_A 129 ESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLL-DELLENDDDLANMYLTV 207 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTCHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHcCHHHHHHhhccC
Confidence 45566666666666665555544443211 1121 23333443333333322 23556888999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (292)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k 208 (292)
+..-....++++--++.+-.+++.+-..+..|...|...+
T Consensus 208 k~~~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TE 247 (261)
T 3rkg_A 208 KKSPKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTE 247 (261)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544444555555555555555555555555555554443
No 93
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=45.33 E-value=57 Score=24.56 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (292)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 212 (292)
..|+.+...+..+++.|+.....+...+..++.+.+
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433
No 94
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=44.96 E-value=1.7e+02 Score=26.24 Aligned_cols=20 Identities=10% Similarity=0.303 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 022758 240 LSAFEKMEEKVLTMESQADS 259 (292)
Q Consensus 240 ~~~feR~eeki~~~EA~AeA 259 (292)
...++.|..-+.......+.
T Consensus 271 ~~~~~~l~~~i~~id~~~Di 290 (350)
T 3aco_A 271 KAIYHDLEQSIRAADAVEDL 290 (350)
T ss_dssp HHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHH
Confidence 34566677776665555443
No 95
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=44.63 E-value=56 Score=24.63 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (292)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e 206 (292)
..++.....+..+++.+......+...+..++.|++.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555543
No 96
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.46 E-value=58 Score=20.57 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 188 NVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 188 ~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
..++..+.++.+|+.++..++.++..|
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777788888887777655
No 97
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=42.92 E-value=98 Score=22.77 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 117 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (292)
Q Consensus 117 kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~ 196 (292)
.+|..+-.+....-++.-+++.++..+.++..+-+.- +..+...+..+..+++.++.+.-.-
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E------------~~~R~~~E~d~~~LrkdvD~a~l~r------ 65 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE------------MLQREEAENTLQSFRQDVDNASLAR------ 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHTTHHHHHHHH------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhHHHHHHHH------
Confidence 3444455555566666777777777777776665431 2233445555555655555544444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022758 197 TRLLESKIQEARSKKDTL 214 (292)
Q Consensus 197 l~~Le~Ki~e~k~k~~~L 214 (292)
..|+.+++.++.++.-|
T Consensus 66 -~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 66 -LDLERKVESLQEEIAFL 82 (86)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 44444445554444433
No 98
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=42.91 E-value=78 Score=26.89 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=40.6
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (292)
Q Consensus 94 ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~ 144 (292)
|+++.||..++..+|.=+-+.+..++..+.+...+-.+|.++.++..++.+
T Consensus 133 L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 133 LEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566789999999899988888888888888877777777777776665543
No 99
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=42.81 E-value=59 Score=23.91 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
+...+...+..-..|+..+..|+..+++.+.+++.+++.
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~E 49 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAE 49 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555555555554444433
No 100
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=41.20 E-value=1.2e+02 Score=23.41 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022758 187 KNVVNNLVSNTRLLESK 203 (292)
Q Consensus 187 ~~~v~~Lk~~l~~Le~K 203 (292)
+..|..++..+.+|+..
T Consensus 81 ~~~Vsalq~KiaeLKrq 97 (107)
T 2k48_A 81 RAAVSTLETKLGELKRQ 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 101
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.93 E-value=85 Score=21.68 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 178 ALKAQLDQQKNVVNNLVSNTRLLESKI 204 (292)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~Ki 204 (292)
.++..++.++.....|+..+..|+..+
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 102
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=40.29 E-value=61 Score=28.88 Aligned_cols=21 Identities=5% Similarity=0.234 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLASQK 130 (292)
Q Consensus 110 emee~l~kar~alA~v~A~~k 130 (292)
+++.++.+++..+....+...
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~ 86 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQ 86 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666655555444333
No 103
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=39.72 E-value=1.2e+02 Score=23.02 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 203 KIQEARSKKDTLKARAQSAKTATKVS 228 (292)
Q Consensus 203 Ki~e~k~k~~~LkAr~~~AkAq~~i~ 228 (292)
++++++.++..|....+-+..++.++
T Consensus 68 ~v~elqgEI~~Lnq~Lqda~~~~~~~ 93 (99)
T 3ni0_A 68 RIKELENEVTKLNQELENLRIQKETS 93 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555544455555443
No 104
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=39.28 E-value=1.7e+02 Score=24.45 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022758 197 TRLLESKIQEARSKKDT 213 (292)
Q Consensus 197 l~~Le~Ki~e~k~k~~~ 213 (292)
++++..+|.+++.++..
T Consensus 115 I~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 115 INAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 105
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=39.18 E-value=1.8e+02 Score=24.72 Aligned_cols=48 Identities=8% Similarity=0.234 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Q 022758 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179 (292)
Q Consensus 132 le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l 179 (292)
++.-..+.+..+.++......++..|+-+-|...+.+.+-+..-...+
T Consensus 153 l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~~i 200 (207)
T 3bvo_A 153 MKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKI 200 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444444566666677777788888999888888877766554443333
No 106
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=38.87 E-value=1.2e+02 Score=22.71 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAE 140 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~ 140 (292)
++..+++++..-..+.+.+-.+-..+..+...+..++
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le 45 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQ 45 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444444444444444333333333333333333
No 107
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=38.81 E-value=47 Score=21.37 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 190 VNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 190 v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
+..|+..++.|+.|+..++.+...|
T Consensus 22 laaleselqalekklaalksklqal 46 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555566666555555444
No 108
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=38.20 E-value=2.7e+02 Score=26.46 Aligned_cols=97 Identities=23% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL- 179 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l- 179 (292)
+.+|.-.+.+....+.++ +.++.--..+.++++-+++..... |-.+-..----|-|+|-+.||...+.+-.++.+|
T Consensus 389 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (494)
T 1y4c_A 389 EELLKIALQEAQKTLQQA-QELAKKGGGEEQLKRALKRADRNL--WAAQELAKKGGGGEELLKQALQQAQQLLRQAQELA 465 (494)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHSSCCHHHHHHHHHHHHHHH--HHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHccCcHHHHHHHHHhhhhhh--HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHH
Q 022758 180 -----KAQLDQQKNVVNNLVSNTRLL 200 (292)
Q Consensus 180 -----~~ql~~~~~~v~~Lk~~l~~L 200 (292)
+..+.+.-.+..+|-.+.++|
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (494)
T 1y4c_A 466 KKGGGEELLKQALQQAQQLLQQAQEL 491 (494)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHHHHHHH
No 109
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=37.89 E-value=44 Score=33.15 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~A 153 (292)
+++-++.++++..+++.++.+..-....|+.+...++.+...++.++..|
T Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~ 389 (575)
T 2i1j_A 340 YQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNEL 389 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555554444444445555555555555555444443
No 110
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=37.85 E-value=2.3e+02 Score=27.55 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022758 193 LVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 193 Lk~~l~~Le~Ki~e~k~k~ 211 (292)
|+..+..++.++.+++.++
T Consensus 128 l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 128 IRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 111
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=37.73 E-value=82 Score=20.39 Aligned_cols=26 Identities=15% Similarity=0.394 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 190 VNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 190 v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
+++....+..-+.+|.+++.++..|.
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 112
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.45 E-value=1e+02 Score=21.30 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
..+.+...+..|+..-..|+.+|..++.+...|+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555443
No 113
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=37.26 E-value=2.1e+02 Score=25.04 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHHHH
Q 022758 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE-------------EDLAREALKRRKSYADN 175 (292)
Q Consensus 109 remee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~-------------EdLAreAL~rk~~~e~~ 175 (292)
.++++.+.++...+..+...-...+.+|...-.+++....+...+-..+. +.+...+..-+.+|...
T Consensus 139 k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~ 218 (312)
T 3abh_A 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKS 218 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777766666667777777766666666555444321110 22333444445566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLLE 201 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le 201 (292)
+..+..........+-.+-..++.++
T Consensus 219 v~~~n~~~~~~~~~~~~~~~~~Q~le 244 (312)
T 3abh_A 219 LKELDQGTPQYMENMEQVFEQCQQFE 244 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66666555555444444444444443
No 114
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=37.17 E-value=21 Score=32.99 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
+.+..|+..+...+.++..|+..+..++.||++++.+...|..+
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777778888888888888888888777766665443
No 115
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=36.40 E-value=1.1e+02 Score=21.50 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 188 NVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (292)
Q Consensus 188 ~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 216 (292)
..+..-...+...+..|.++++....|..
T Consensus 42 ~~~~~~~~~l~~~k~Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 42 EAANRNNDALRQAKQESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444433
No 116
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=36.22 E-value=2.1e+02 Score=24.74 Aligned_cols=36 Identities=8% Similarity=0.108 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL 200 (292)
Q Consensus 165 AL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~L 200 (292)
+-.-+.+|...+..+...........-.+-..++.|
T Consensus 186 ~~~a~~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q~l 221 (290)
T 3i2w_A 186 VQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTF 221 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333345555555555555444444444444444444
No 117
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=36.18 E-value=1.3e+02 Score=22.08 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 220 (292)
+.+.+...+..++.+...-+.|+.--.+|+.-|.+++++...|......
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~ 64 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIEL 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777777777777766666554443
No 118
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=35.82 E-value=36 Score=27.57 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022758 113 DDLVKMRQATAQVLASQKR 131 (292)
Q Consensus 113 e~l~kar~alA~v~A~~k~ 131 (292)
+.|..++..++..-...+.
T Consensus 8 d~L~~~r~~l~~~~~~~~~ 26 (135)
T 2e7s_A 8 EQLNKSLKTIASQKAAIEN 26 (135)
T ss_dssp STTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333
No 119
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=34.35 E-value=94 Score=20.09 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 187 KNVVNNLVSNTRLLESKIQEARSKKDT 213 (292)
Q Consensus 187 ~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 213 (292)
+..+..|.....+|+.+|..+.++=.+
T Consensus 9 E~r~k~le~~naeLEervstLq~EN~m 35 (42)
T 2oqq_A 9 ENRVKDLENKNSELEERLSTLQNENQM 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333344444444444444444443333
No 120
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=34.19 E-value=32 Score=31.12 Aligned_cols=19 Identities=21% Similarity=0.083 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLAS 128 (292)
Q Consensus 110 emee~l~kar~alA~v~A~ 128 (292)
+.+.++..++..++...+.
T Consensus 67 ~~~~~l~~~~a~l~~~~a~ 85 (369)
T 4dk0_A 67 TQINTLNTRKAALASYQAQ 85 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666655554443
No 121
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=33.90 E-value=3.1e+02 Score=26.01 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ 202 (292)
+.++..|+..+......+..|+..+..|+.
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 104 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 122
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=33.71 E-value=1.7e+02 Score=22.85 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 022758 199 LLESKIQEARSKKDTL 214 (292)
Q Consensus 199 ~Le~Ki~e~k~k~~~L 214 (292)
.++.||.++++.+...
T Consensus 73 ~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 73 SIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 123
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=33.46 E-value=45 Score=18.90 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 022758 140 EQASEDWYRKAQLALQKG 157 (292)
Q Consensus 140 ~~~~~~~e~rA~~AL~~G 157 (292)
+..+..|+.+.--||+.|
T Consensus 9 rrriarwekriayalkng 26 (26)
T 1hji_B 9 RRRIARWEKRIAYALKNG 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 467889999999998876
No 124
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=33.20 E-value=1.7e+02 Score=22.81 Aligned_cols=54 Identities=17% Similarity=0.261 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 164 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 164 eAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
....++..+..++..-...+.........|...-..|+.+|.++..+.+...-+
T Consensus 45 ~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~ 98 (129)
T 2fxo_A 45 SLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555444433
No 125
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.98 E-value=1.5e+02 Score=27.92 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 214 (292)
++.++..++.+....+..+.+++..+.+++.++.+-...+..|
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333333
No 126
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=32.96 E-value=1.3e+02 Score=23.93 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 022758 131 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL 166 (292)
Q Consensus 131 ~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL 166 (292)
.++.++.+++..+..++..+...-..+.++.....+
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~ 45 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGF 45 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 456777778888887777666655555555555543
No 127
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=32.74 E-value=2.4e+02 Score=24.30 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 211 (292)
++.++..++.++..+..+++.+..+.+.++.++.+.
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~ 96 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRT 96 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566665555555555554443
No 128
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=32.65 E-value=1.3e+02 Score=21.62 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (292)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k 208 (292)
.+..++.++......+..++.++..++.+|+-++
T Consensus 9 sVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 9 KIKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 4555666666666666667666666666666553
No 129
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=32.56 E-value=83 Score=19.64 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 171 SYADNANALKAQLDQQKNVVNNLVS 195 (292)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~ 195 (292)
++++.++.|-..-..++..|..|+.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 130
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=32.16 E-value=1.4e+02 Score=21.57 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLAS 128 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~ 128 (292)
..-+...|-+++.++.+++..+++....
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~E 55 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLRE 55 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555554444333
No 131
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=31.66 E-value=1.6e+02 Score=22.05 Aligned_cols=44 Identities=9% Similarity=0.323 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 022758 178 ALKAQLDQQKNVVNNLVSNTR--------LLESKIQEARSKKDTLKARAQSA 221 (292)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~--------~Le~Ki~e~k~k~~~LkAr~~~A 221 (292)
..+..++++...+++|.-.++ .+..||..++..++.|+...+.+
T Consensus 42 ~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 42 NVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555544333 56778888888887777665543
No 132
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.07 E-value=70 Score=21.90 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 179 LKAQLDQQKNVVNNLVSNTRLLES 202 (292)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~ 202 (292)
|+..++.++.....|...+..|+.
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 133
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=30.94 E-value=1.6e+02 Score=21.56 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022758 107 AVLEMNDDLVKMRQATA 123 (292)
Q Consensus 107 ~Iremee~l~kar~alA 123 (292)
.|-+++.++.+++..++
T Consensus 36 ~i~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 36 LLAEKEREMAEMRARMQ 52 (86)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 134
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=30.81 E-value=2.3e+02 Score=23.48 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 022758 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (292)
Q Consensus 98 EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (292)
.||+-+.+++ +..+.|..+... ..++.-..+.+..+..+..+...++..|+-+-|+..+.+..-+..-..
T Consensus 99 ~d~~fLme~m--e~rE~leea~~~--------~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~ 168 (181)
T 3uo3_A 99 SDPQLLLKVL--DIHDELSQMDDE--------AGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAK 168 (181)
T ss_dssp TCHHHHHHHH--HHHHHHHHCCSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH--HHHHHHHhccCH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 3565444432 445555554321 223344456677888888888899999998888888777665554433
Q ss_pred H
Q 022758 178 A 178 (292)
Q Consensus 178 ~ 178 (292)
.
T Consensus 169 ~ 169 (181)
T 3uo3_A 169 A 169 (181)
T ss_dssp H
T ss_pred H
Confidence 3
No 135
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=30.69 E-value=3.3e+02 Score=25.22 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=17.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 153 ALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNN 192 (292)
Q Consensus 153 AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~ 192 (292)
.+.++.+++..+.-...+..++.+..|+.++....+.|-+
T Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 411 (463)
T 2xz3_A 372 LSHQRLTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQ 411 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444443333333334444444555555544444433
No 136
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=30.33 E-value=1.9e+02 Score=22.32 Aligned_cols=34 Identities=9% Similarity=0.182 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLE 201 (292)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le 201 (292)
++..++..+..++.++...+.++..+...++++.
T Consensus 96 r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 96 QKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555555555555555544
No 137
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=30.31 E-value=2.9e+02 Score=24.46 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (292)
Q Consensus 109 remee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~ 145 (292)
.+++..+.++...+......-......|...-.+.+.
T Consensus 130 K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~ 166 (337)
T 2x3v_A 130 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERL 166 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666665555443
No 138
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=30.25 E-value=1.1e+02 Score=22.29 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (292)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~ 209 (292)
.++..|..+.+.++..+..+.....+++.++.++..
T Consensus 37 ~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 37 AKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444455555444443
No 139
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=30.25 E-value=1.3e+02 Score=25.70 Aligned_cols=6 Identities=0% Similarity=0.191 Sum_probs=3.0
Q ss_pred ccCCHH
Q 022758 96 SFEDPE 101 (292)
Q Consensus 96 ~~EDPe 101 (292)
.+.+|.
T Consensus 52 ~ld~~~ 57 (277)
T 2f1m_A 52 QIDPAT 57 (277)
T ss_dssp EECCHH
T ss_pred EECcHH
Confidence 445554
No 140
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=29.87 E-value=1.3e+02 Score=24.03 Aligned_cols=37 Identities=11% Similarity=0.181 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k 208 (292)
++.++..++..++..+..+..++.++..++..++++.
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666555555566655555555555543
No 141
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=29.55 E-value=2e+02 Score=22.40 Aligned_cols=40 Identities=8% Similarity=0.104 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (292)
Q Consensus 165 AL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki 204 (292)
+-..+.++..++..|..++...+..+..|...+.+++..+
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~v 75 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDV 75 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556666666666666666666655555554433
No 142
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=29.27 E-value=2.4e+02 Score=23.15 Aligned_cols=24 Identities=4% Similarity=-0.091 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 131 RLENKCKAAEQASEDWYRKAQLAL 154 (292)
Q Consensus 131 ~le~kl~~~~~~~~~~e~rA~~AL 154 (292)
...++++.....++..+.+...-+
T Consensus 21 ~~~r~Ldr~~~kle~~ekk~~~~I 44 (179)
T 2gd5_A 21 KEMRVVDRQIRDIQREEEKVKRSV 44 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 143
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=29.25 E-value=2.1e+02 Score=22.55 Aligned_cols=30 Identities=10% Similarity=0.273 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (292)
Q Consensus 122 lA~v~A~~k~le~kl~~~~~~~~~~e~rA~ 151 (292)
.+.|+..-+.|+.+|..+..+-..+..+=+
T Consensus 4 a~~V~s~l~~LEaeyq~L~~kE~qrynqek 33 (119)
T 2avr_X 4 AASLVGELQALDAEYQNLANQEEARFNEER 33 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999998888777765543
No 144
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=28.99 E-value=3.9e+02 Score=25.83 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 190 VNNLVSNTRLLESKIQEARSKKDT 213 (292)
Q Consensus 190 v~~Lk~~l~~Le~Ki~e~k~k~~~ 213 (292)
+..++..+..++.++.++..++..
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555554544444443
No 145
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=28.94 E-value=1.7e+02 Score=21.44 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 212 (292)
..+-...++...+.....+..|...+..++.++.+++.++.
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 146
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=28.94 E-value=1.5e+02 Score=20.66 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
.+...-+..-++-+.++-..-..|.+.++.|..+|..+..+-..|+
T Consensus 16 levK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 16 LELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3344455556666777777777888888888888888887766554
No 147
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=28.86 E-value=2.9e+02 Score=23.98 Aligned_cols=65 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 133 ENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (292)
Q Consensus 133 e~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 212 (292)
|.++..++..+.+.+. |+..-+..+..++.-+.+.+..+..|+.++..++.++.....+..
T Consensus 83 e~rI~a~~a~l~dHE~-------------------RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Is 143 (242)
T 3c9i_A 83 EARIKQLRIDVDDHES-------------------RITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNIS 143 (242)
T ss_dssp HHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccHHH-------------------Hhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchh
Q ss_pred HHHH
Q 022758 213 TLKA 216 (292)
Q Consensus 213 ~LkA 216 (292)
.|.+
T Consensus 144 al~~ 147 (242)
T 3c9i_A 144 ALQA 147 (242)
T ss_dssp HHHH
T ss_pred hhhh
No 148
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.71 E-value=2e+02 Score=27.02 Aligned_cols=9 Identities=11% Similarity=-0.075 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 022758 189 VVNNLVSNT 197 (292)
Q Consensus 189 ~v~~Lk~~l 197 (292)
.+..++..+
T Consensus 32 ~~~~~~~~~ 40 (403)
T 4etp_A 32 GMKELNEIL 40 (403)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 149
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=28.15 E-value=1.4e+02 Score=26.45 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=39.2
Q ss_pred cccCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHH
Q 022758 73 NTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQA 121 (292)
Q Consensus 73 ~~~M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~a 121 (292)
+.....|..+.+++...+..++..-.+|+..|+++..++++.|.+..++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~e~al~~~~~~~~~~L~~y~k~ 416 (419)
T 4aq4_A 368 GLRLGNMPQIRVIVDEELESVWTGKKTPQQALDTAVERGNQLLRRFEKS 416 (419)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678889999999999999888899999988888888777776543
No 150
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=27.32 E-value=1.9e+02 Score=21.94 Aligned_cols=11 Identities=36% Similarity=0.576 Sum_probs=7.5
Q ss_pred chHHHHHHHHH
Q 022758 77 NLFDRLARVVK 87 (292)
Q Consensus 77 ~if~Rl~~lir 87 (292)
+.|.|+...+.
T Consensus 36 ~tfarLc~~Vd 46 (96)
T 1t3j_A 36 TTFARLCQQVD 46 (96)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 48888876543
No 151
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.32 E-value=1.4e+02 Score=19.85 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (292)
Q Consensus 101 e~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA 150 (292)
..-++..+.++...+...+..+-.....-.++...+......+.+|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888999998887664
No 152
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=27.27 E-value=2.5e+02 Score=22.80 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
+++-...|+++++.-..-+..|+.-....+..+.+.+...+.++..
T Consensus 84 L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~K 129 (152)
T 4fla_A 84 LAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQK 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555544455555555555555444
No 153
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=26.41 E-value=1.9e+02 Score=21.12 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 022758 200 LESKIQEARSKK 211 (292)
Q Consensus 200 Le~Ki~e~k~k~ 211 (292)
++.||.++++.+
T Consensus 57 lq~Ki~elkrql 68 (78)
T 2ic6_A 57 LETKLGELKREL 68 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 154
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=25.98 E-value=1.5e+02 Score=26.03 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (292)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~ 209 (292)
.+.|+++..++..+++..+..+..+..+..++.++.++..
T Consensus 9 d~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d 48 (233)
T 2yko_A 9 DQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWD 48 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655555555555555555555543
No 155
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=25.68 E-value=1.9e+02 Score=20.83 Aligned_cols=13 Identities=8% Similarity=-0.246 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 022758 142 ASEDWYRKAQLAL 154 (292)
Q Consensus 142 ~~~~~e~rA~~AL 154 (292)
.+..|...-...+
T Consensus 15 ~lk~~f~~Lr~~v 27 (80)
T 1nlw_A 15 HLRLSLEKLKGLV 27 (80)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHc
Confidence 3344444444433
No 156
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=25.48 E-value=48 Score=21.60 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 022758 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEM 111 (292)
Q Consensus 77 ~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Irem 111 (292)
++|.|+++++++.++.+ ..+--|.-++---|..+
T Consensus 2 ~mWErVk~ilks~l~~a-S~iPGPVG~~asGi~gl 35 (44)
T 1nov_D 2 TFWERVRSILKSGLNFA-STIPGPVGVAATGIKGI 35 (44)
T ss_pred cHHHHHHHHHHHHHHHH-hcCCCchhHHHHhHHHH
Confidence 58999999999987754 45566765555444433
No 157
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=25.43 E-value=3.1e+02 Score=23.16 Aligned_cols=68 Identities=6% Similarity=0.202 Sum_probs=39.4
Q ss_pred HHHHHHHHH---HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 81 RLARVVKSY---ANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (292)
Q Consensus 81 Rl~~lira~---~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~r 149 (292)
=|.+++... +++++.... +..-+.+.+.++...+.....-...+...+..++.++.+.+.....|..+
T Consensus 42 eL~~LL~~~~dlL~~~v~~l~-~~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k 112 (192)
T 2p22_C 42 EIIDLIQTHRHQLELYVTKFN-PLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVAS 112 (192)
T ss_dssp HHHHHHHHCHHHHHHHGGGGS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444 555555443 23344444445555555555555666667777777777777777777444
No 158
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=25.27 E-value=1.2e+02 Score=18.58 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNN 192 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~ 192 (292)
++.++.|-..-..++..|..
T Consensus 7 EdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHH
Confidence 33333333333333333333
No 159
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=24.98 E-value=1.8e+02 Score=22.87 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL 154 (292)
|.-.|+..++.|..+++++- ..-..+.++++..|.+|..-++.|+
T Consensus 12 L~~~i~~l~~~L~~lkqa~k------~~~~~~~~eL~~LI~KWr~asq~aa 56 (122)
T 3viq_A 12 LEKEVRNLQEQLITAETARK------VEAKNEDKDLQTLIQKWKNAAQQAA 56 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555432 2223344566777777777666654
No 160
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=24.98 E-value=4.8e+02 Score=25.23 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 157 GEEDLAREALKRRKS---YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 157 G~EdLAreAL~rk~~---~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
|+-++.++.+.++.. .-+.+-.+..++.+....++.|+.....+..+|..+
T Consensus 13 ~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 13 GDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp CCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888877642 234555555556555555555555555555555443
No 161
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=24.77 E-value=2.1e+02 Score=21.09 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (292)
Q Consensus 107 ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~ 152 (292)
||+.+..+..+++. .....++++..-..+-..+++++.+|+.
T Consensus 40 YI~~Lq~e~~r~~e----~e~r~k~le~~n~~l~~riqELE~qa~~ 81 (83)
T 4ath_A 40 YIRKLQREQQRAKD----LENRQKKLEHANRHLLLRVQELEMQARA 81 (83)
T ss_dssp HHHHHHHTHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 55565555554444 4556778888888888888888888864
No 162
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=24.65 E-value=50 Score=21.48 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q 022758 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMN 112 (292)
Q Consensus 77 ~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Ireme 112 (292)
++|.|+++++++.++.+ ..+--|.-++---|..+-
T Consensus 2 ~~WErVk~ilks~l~a~-S~iPGPVG~~asGi~~l~ 36 (44)
T 2z2q_B 2 SMWERVKSIIKSSLAAA-SNIPGPIGVAASGISGLS 36 (44)
T ss_pred cHHHHHHHHHHHHHHHH-hcCCCchhHHHHhHHHHH
Confidence 58999999999988764 455677666554444433
No 163
>3m6j_A Uncharacterized protein; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; 1.90A {Leptospirillum rubarum}
Probab=24.41 E-value=2.3e+02 Score=22.99 Aligned_cols=38 Identities=16% Similarity=0.433 Sum_probs=26.8
Q ss_pred CCcccccCCCcccccCchHHHHHHHHHHHHHHHhcccCC
Q 022758 61 RSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFED 99 (292)
Q Consensus 61 ~~~~~~~~~~~~~~~M~if~Rl~~lira~~n~~ld~~ED 99 (292)
+-+|++-|.|++- .|...+|++.|++.-.+-+++..-|
T Consensus 74 d~~~~~~~~~~iE-~la~~~~lr~iv~~~~~~~v~~y~~ 111 (145)
T 3m6j_A 74 DAQPAHAGSGKIE-TISECDRLKNLVRNVTDTLVENYPQ 111 (145)
T ss_dssp -------CCSSCC-SHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred ccccccCCchHHH-HHHHHHHHHHHHHhhHHHHHhcCCC
Confidence 4566666667754 4999999999999999999999887
No 164
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=24.27 E-value=2.2e+02 Score=21.20 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (292)
Q Consensus 110 emee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~ 148 (292)
.++..|..++..=+..+..-..+++..+.+..++...+.
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~ 46 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQA 46 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444445444444444444444444444444444333
No 165
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=23.81 E-value=2.4e+02 Score=21.39 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022758 199 LLESKIQEARSKKDTLK 215 (292)
Q Consensus 199 ~Le~Ki~e~k~k~~~Lk 215 (292)
.++.||.++++.+....
T Consensus 56 ~lq~Ki~elkr~lAd~v 72 (96)
T 2ic9_A 56 ALETKLGELKRELADLI 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 166
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.79 E-value=1.5e+02 Score=21.25 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022758 182 QLDQQKNVVNNLVSNTRLLESKI 204 (292)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~Ki 204 (292)
+...+...++.|+.....|+.++
T Consensus 55 ~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 55 KNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444333
No 167
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.49 E-value=1.5e+02 Score=23.69 Aligned_cols=29 Identities=10% Similarity=0.105 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 185 QQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (292)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 213 (292)
+....+++|.+.+.+++.+++.++.+...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666555433
No 168
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.34 E-value=1.6e+02 Score=19.06 Aligned_cols=25 Identities=8% Similarity=0.227 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 176 ANALKAQLDQQKNVVNNLVSNTRLL 200 (292)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~L 200 (292)
+......++..++++..|+..+.+|
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333
No 169
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=23.17 E-value=2.4e+02 Score=21.18 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (292)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~ 205 (292)
.+|+-++..--+.++..+..|-.|+....+++.+++
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YE 74 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYE 74 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666666666655443
No 170
>3abd_X REV3, HREV3, DNA polymerase zeta catalytic subunit; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_Z*
Probab=22.98 E-value=25 Score=23.42 Aligned_cols=11 Identities=36% Similarity=0.332 Sum_probs=3.4
Q ss_pred ccccCccceee
Q 022758 40 SFFNGGVGALK 50 (292)
Q Consensus 40 ~~~~~~~~~~~ 50 (292)
+|-++++..|+
T Consensus 23 ~~t~~~~~ILK 33 (52)
T 3abd_X 23 SFTPRTANILK 33 (52)
T ss_dssp -----CTTEEE
T ss_pred CCCCCcccccc
Confidence 34344466555
No 171
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.97 E-value=1.3e+02 Score=26.74 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 185 QQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
+++.+++.|..+...|...+.+++.+...|+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lk 88 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALR 88 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444443333
No 172
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.75 E-value=2.2e+02 Score=20.46 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 185 QQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (292)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 215 (292)
..+..-..|+..+..++..+++-+.+++.++
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~ 41 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFR 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444433
No 173
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.71 E-value=1.7e+02 Score=19.38 Aligned_cols=35 Identities=17% Similarity=0.034 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
+.++..|+...+.+-..+..|+..-.+++..|..+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 45556666666666666666665555555554444
No 174
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=22.70 E-value=1.4e+02 Score=24.38 Aligned_cols=35 Identities=9% Similarity=-0.007 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
......++..+.....++..++.++.++..|.+..
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~ 103 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEK 103 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHH
Confidence 44455555555555566666666666655555443
No 175
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=22.66 E-value=81 Score=19.34 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHhhc
Q 022758 238 SALSAFEKMEEKVLTMESQADSLNQ 262 (292)
Q Consensus 238 ~a~~~feR~eeki~~~EA~AeA~~e 262 (292)
+..+.+-|+|.+|..++-+.+.+-+
T Consensus 7 Sm~~Rl~kVE~qv~~md~KLd~l~~ 31 (33)
T 2ovc_A 7 SMMGRVVKVEKQVQSIEHKLDLLLG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999988887643
No 176
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=22.39 E-value=1.3e+02 Score=17.84 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 115 LVKMRQATAQVLASQKRLENKCKAAEQA 142 (292)
Q Consensus 115 l~kar~alA~v~A~~k~le~kl~~~~~~ 142 (292)
+.++...+|++-+..-+++++..+++.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4566777888888888888888776643
No 177
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=22.28 E-value=2.6e+02 Score=21.22 Aligned_cols=39 Identities=23% Similarity=0.114 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022758 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (292)
Q Consensus 109 remee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~ 156 (292)
...++.+..++.++. ...|...+..++.-+--|++|..+
T Consensus 32 ~~A~dKl~~A~~Am~---------~~~y~~Ar~lAEqAe~DArLAeAk 70 (98)
T 4fm3_A 32 KLAQDKYAAAQIAMT---------AESYKKARLLAEQAELDARLAESK 70 (98)
T ss_dssp HHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------cccHHHHHHHHHHHHHhHHHHHHH
Confidence 355555655555543 345555555555555556665443
No 178
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.14 E-value=3.3e+02 Score=22.33 Aligned_cols=89 Identities=9% Similarity=0.075 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLE 201 (292)
Q Consensus 122 lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le 201 (292)
++.-.+.+-.++.++.++-........ |+ +...-....+.+..|+..+...+..+..++..+..-.
T Consensus 30 l~~rL~~Rd~~E~~~~~l~~e~~~~~~--------~~------~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~ 95 (152)
T 3a7p_A 30 LIRRLTDRNDKEAHLNELFQDNSGAIG--------GN------IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKN 95 (152)
T ss_dssp -----------------------------------CH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCC--------cc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666667777777766666441111 11 2222233345667777777777777777777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022758 202 SKIQEARSKKDTLKARAQSAKTA 224 (292)
Q Consensus 202 ~Ki~e~k~k~~~LkAr~~~AkAq 224 (292)
.-++.++.+...|..+.+.+...
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776665443
No 179
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=22.05 E-value=1.3e+02 Score=18.51 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022758 178 ALKAQLDQQKNVVNNLVSNTRL 199 (292)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~ 199 (292)
+.++.+++++.+-..|+.+++.
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444443
No 180
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=21.97 E-value=3.2e+02 Score=22.21 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022758 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (292)
Q Consensus 97 ~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 174 (292)
..||+-+.+++ +..+.|..+... .....++.-..+....+..+......++..++-+-|...+.+..-+..
T Consensus 86 ~~d~~fLme~m--e~rE~lee~~~~-----~d~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y~~k 156 (171)
T 1fpo_A 86 VRDTAFLMEQL--ELREELDEIEQA-----KDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDK 156 (171)
T ss_dssp CSCHHHHHHHH--HHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH--HHHHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 34776555432 444555555432 111234444556666777778888888999988888888776554433
No 181
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.56 E-value=5.5e+02 Score=24.77 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022758 125 VLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (292)
Q Consensus 125 v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (292)
.-...+.+..++++++.+.....++...+...|
T Consensus 75 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~ 107 (501)
T 1wle_A 75 TWQELRQLREQIRSLEEEKEAVTEAVRALVVNQ 107 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 334455555566666666555555554443333
No 182
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.36 E-value=5.6e+02 Score=24.78 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k 208 (292)
+.++..|+.-++.+=..+..|+..|+.+..+|+.++
T Consensus 117 e~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE 152 (491)
T 1m1j_A 117 RRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLE 152 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433444444444444444444443
No 183
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=21.19 E-value=2.4e+02 Score=20.33 Aligned_cols=61 Identities=8% Similarity=0.243 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 022758 157 GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN-------TRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 157 G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~-------l~~Le~Ki~e~k~k~~~LkAr 217 (292)
++-+-+..-+.+.+.+...+...+..++........|... ...++.++..++.+-+.|...
T Consensus 33 ~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~ 100 (119)
T 3uun_A 33 NDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVA 100 (119)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777888888888888777777777776432 234555666666555555544
No 184
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=21.19 E-value=1.4e+02 Score=23.09 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 184 DQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
+.....+..|+..+..|+.++..+
T Consensus 92 ~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 92 EKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455555555555555444
No 185
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=21.14 E-value=1.7e+02 Score=18.81 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 190 VNNLVSNTRLLESKIQEARSKKDTLKARA 218 (292)
Q Consensus 190 v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 218 (292)
+..|+.....|+.+..+++.+..+|....
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45666666666666666666666665443
No 186
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=21.06 E-value=2.5e+02 Score=20.52 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (292)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 217 (292)
+..+...+..+..+...+.+.......|+.+...+-.++..|..+
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555555544
No 187
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.96 E-value=3.5e+02 Score=22.17 Aligned_cols=95 Identities=17% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (292)
Q Consensus 104 LeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (292)
+....-+.+..+.++...+..-.+.+...+.....+..+++++. |-+-=+++. .-..|=.....++.....|+.++
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT--asLFeEAN~--MVa~ar~~~~~~e~r~~~L~~ql 124 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT--ASLFDEANN--MVADARKEKYAIEILNKRLTEQL 124 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022758 184 DQQKNVVNNLVSNTRLLES 202 (292)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~ 202 (292)
......++.+..++..|+.
T Consensus 125 ~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 125 REKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 188
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=20.61 E-value=5.4e+02 Score=24.27 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=10.1
Q ss_pred cCchHHHHHHHHHHHHHHH
Q 022758 75 RMNLFDRLARVVKSYANAI 93 (292)
Q Consensus 75 ~M~if~Rl~~lira~~n~~ 93 (292)
.+|-|...++.+...+..+
T Consensus 75 e~gtl~~aw~~~~~e~e~~ 93 (486)
T 3haj_A 75 QYGTVEKAWMAFMSEAERV 93 (486)
T ss_dssp CCSHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHH
Confidence 3455666666665544433
No 189
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.56 E-value=2.3e+02 Score=24.15 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSE 229 (292)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~ 229 (292)
...+.+++.....|.+|......|..+++....+...|+.+..+++.+...+.
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
No 190
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=20.52 E-value=2.8e+02 Score=20.93 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (292)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~ 207 (292)
.-+..++..|+..-..-...-+++......|...+..+
T Consensus 43 ~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~l 80 (94)
T 3jsv_C 43 PVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33334444444333333333333333333333333333
No 191
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.48 E-value=1.2e+02 Score=28.57 Aligned_cols=30 Identities=7% Similarity=0.159 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022758 128 SQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (292)
Q Consensus 128 ~~k~le~kl~~~~~~~~~~e~rA~~AL~~G 157 (292)
.++.+..+++.++.+.....++...+...|
T Consensus 38 ~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~ 67 (425)
T 2dq3_A 38 RRREIIKRLEALRSERNKLSKEIGKLKREG 67 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTGGGSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344444445555555555544444333444
No 192
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=20.42 E-value=1.4e+02 Score=17.46 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022758 189 VVNNLVSNTRLLESKIQE 206 (292)
Q Consensus 189 ~v~~Lk~~l~~Le~Ki~e 206 (292)
.-..|++.++.|+.|++.
T Consensus 9 kcaalesklqalekklea 26 (31)
T 3ljm_A 9 KCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 193
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.40 E-value=3e+02 Score=21.21 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=14.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 022758 149 KAQLALQKGEEDLAREALKRRK 170 (292)
Q Consensus 149 rA~~AL~~G~EdLAreAL~rk~ 170 (292)
.|..+....-||+=+.++.++.
T Consensus 60 dAe~~~E~DPDevNK~tl~~R~ 81 (107)
T 2k48_A 60 DAEKAVEVDPDDVNKSTLQNRR 81 (107)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHH
Confidence 3555667777887777776554
No 194
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=20.23 E-value=4.9e+02 Score=23.66 Aligned_cols=6 Identities=0% Similarity=-0.020 Sum_probs=2.7
Q ss_pred CCCCCC
Q 022758 12 TMPMTP 17 (292)
Q Consensus 12 ~~~~~~ 17 (292)
.||+||
T Consensus 78 iP~lP~ 83 (366)
T 3dyt_A 78 IPSLPD 83 (366)
T ss_dssp CCCCC-
T ss_pred CCCCcC
Confidence 355655
No 195
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=20.17 E-value=1.9e+02 Score=20.60 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022758 189 VVNNLVSNTRLLESKIQEAR 208 (292)
Q Consensus 189 ~v~~Lk~~l~~Le~Ki~e~k 208 (292)
.|+.|+.+|++|+..|..++
T Consensus 47 EV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 47 EVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46666677777766665543
No 196
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.10 E-value=5.4e+02 Score=24.06 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 022758 132 LENKCKAAEQASEDWY 147 (292)
Q Consensus 132 le~kl~~~~~~~~~~e 147 (292)
+..+++.++.+.....
T Consensus 40 ~~~~~~~l~~~~n~~s 55 (421)
T 1ses_A 40 LKKRLQEVQTERNQVA 55 (421)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334433333333
Done!