BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022760
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
An Sa-Induced And Partially Npr1-Dependent Transcription
Factor
Length = 76
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 104 DGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVER-SLDGQITEIVYKGSHNHPKP 161
DGY WRKYGQK VKGS PRSY++C+ P CP+KK VER S D ++ Y+G H+H P
Sbjct: 16 DGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 259 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
RIVV T + DI++DGYRWRKYGQK VKG+P PR
Sbjct: 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPR 35
>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
Atwrky4
pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
W-Box Dna
Length = 78
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 96 TREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKG 154
T E +DGY WRKYGQK VKG+ PRSY+KCT P C ++K VER+ D + Y+G
Sbjct: 11 TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEG 70
Query: 155 SHNHPKP 161
HNH P
Sbjct: 71 KHNHDLP 77
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/31 (87%), Positives = 30/31 (96%)
Query: 262 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292
VQTTS++D+LDDGYRWRKYGQKVVKGNP PR
Sbjct: 8 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPR 38
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 241 ENDIEGVIGTGSRTVREPRIVVQTTSDIDI 270
+ D+ GV+G VR P +VVQTT D+ +
Sbjct: 196 KTDLRGVLGM----VRAPCVVVQTTRDVSV 221
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 241 ENDIEGVIGTGSRTVREPRIVVQTTSDIDI 270
+ D+ GV+G VR P +VVQTT D+ +
Sbjct: 194 KTDLRGVLGM----VRAPCVVVQTTRDVSV 219
>pdb|3F6K|A Chain A, Crystal Structure Of The Vps10p Domain Of Human
SortilinNTS3 IN Complex With Neurotensin
Length = 685
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 58 FAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVK 117
+E F D Y+ S Q GH + Y RE+ + +GY RK + +
Sbjct: 590 LCSLEDFLCDFGYYRPENDSKCVEQPELKGHDLEFCLYGREEHLTTNGY--RKIPGDKCQ 647
Query: 118 GSENP 122
G NP
Sbjct: 648 GGVNP 652
>pdb|3UUM|A Chain A, Crystal Structure Of N-Terminal First Spectrin Repeat Of
Utrophin
pdb|3UUM|B Chain B, Crystal Structure Of N-Terminal First Spectrin Repeat Of
Utrophin
Length = 123
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 43 KESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGN 85
++ D S + VK +FA E+F +++++Q++V + Q+GN
Sbjct: 27 EQDDISDDVEDVKEQFATHETFMMELSAHQSSV--GSVLQAGN 67
>pdb|3UUL|A Chain A, Crystal Structure Of First N-Terminal Utrophin Spectrin
Repeat
pdb|3UUL|B Chain B, Crystal Structure Of First N-Terminal Utrophin Spectrin
Repeat
Length = 118
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 43 KESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGN 85
++ D S + VK +FA E+F +++++Q++V S Q+GN
Sbjct: 27 EQDDISDDVEDVKEQFATHETFMMELSAHQSSVGS--VLQAGN 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.128 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,080,113
Number of Sequences: 62578
Number of extensions: 372491
Number of successful extensions: 488
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 21
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.3 bits)