Query 022760
Match_columns 292
No_of_seqs 248 out of 983
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 5.4E-31 1.8E-35 203.7 3.9 69 94-162 6-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 6.5E-31 2.2E-35 204.1 3.8 69 94-162 9-78 (78)
3 2ayd_A WRKY transcription fact 99.6 2.4E-17 8E-22 127.5 1.8 35 258-292 1-35 (76)
4 1wj2_A Probable WRKY transcrip 99.6 3.6E-17 1.2E-21 127.0 1.6 35 258-292 4-38 (78)
5 2rpr_A Flywch-type zinc finger 59.6 2.8 9.7E-05 31.5 1.0 48 102-161 24-74 (87)
6 1odh_A MGCM1; transcription fa 27.6 34 0.0012 29.8 2.6 13 152-164 148-160 (174)
7 1qxn_A SUD, sulfide dehydrogen 26.0 16 0.00054 28.9 0.3 24 267-290 109-133 (137)
8 1cz6_A Protein (androctonin); 19.4 22 0.00077 21.7 -0.1 8 124-131 16-23 (26)
9 3kgb_A Thymidylate synthase 1/ 14.4 22 0.00075 33.2 -1.5 11 273-283 114-124 (294)
10 3ed7_A Tsase, TS, thymidylate 13.5 22 0.00075 33.3 -1.8 12 272-283 116-127 (295)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.96 E-value=5.4e-31 Score=203.73 Aligned_cols=69 Identities=49% Similarity=0.925 Sum_probs=63.1
Q ss_pred ceeeecccCCCCccccccccccCCCCCCCCCCCccCCCCCccccchhhcc-CCceEEEEEecccCCCCCC
Q 022760 94 AYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT 162 (292)
Q Consensus 94 ~~~~~~~~~~DGy~WRKYGQK~ikgs~~pRsYYkCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~P~ 162 (292)
++..+...++|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus 6 ~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 6 HTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp EEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred EecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 34455678999999999999999999999999999999999999999986 6678999999999999885
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.96 E-value=6.5e-31 Score=204.12 Aligned_cols=69 Identities=51% Similarity=0.925 Sum_probs=62.6
Q ss_pred ceeeecccCCCCccccccccccCCCCCCCCCCCccCCCCCccccchhhcc-CCceEEEEEecccCCCCCC
Q 022760 94 AYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT 162 (292)
Q Consensus 94 ~~~~~~~~~~DGy~WRKYGQK~ikgs~~pRsYYkCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~P~ 162 (292)
++..+...++|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus 9 ~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 9 QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred eccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 34455678999999999999999999999999999999999999999985 6778999999999999883
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.65 E-value=2.4e-17 Score=127.48 Aligned_cols=35 Identities=69% Similarity=1.223 Sum_probs=33.8
Q ss_pred cceeeecccccccCCCCccccccCccccCCCCCCC
Q 022760 258 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292 (292)
Q Consensus 258 prvvv~t~s~~di~dDGyrWRKYGQK~VKGnp~PR 292 (292)
.||+|+|.+++++++|||+|||||||.||||||||
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PR 35 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPR 35 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCE
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCce
Confidence 48999999999999999999999999999999998
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.63 E-value=3.6e-17 Score=127.00 Aligned_cols=35 Identities=77% Similarity=1.270 Sum_probs=30.7
Q ss_pred cceeeecccccccCCCCccccccCccccCCCCCCC
Q 022760 258 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 292 (292)
Q Consensus 258 prvvv~t~s~~di~dDGyrWRKYGQK~VKGnp~PR 292 (292)
.+|+|+|.+++++++|||+|||||||.||||||||
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PR 38 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPR 38 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCE
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCee
Confidence 48999999999999999999999999999999998
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=59.61 E-value=2.8 Score=31.51 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=29.2
Q ss_pred CCCCccccccccccCCCCCCCCCCCccCC---CCCccccchhhccCCceEEEEEecccCCCCC
Q 022760 102 SEDGYNWRKYGQKQVKGSENPRSYFKCTF---PDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161 (292)
Q Consensus 102 ~~DGy~WRKYGQK~ikgs~~pRsYYkCt~---~~C~akK~Vqr~~dg~~~~i~Y~G~HnH~~P 161 (292)
.-|||.-.+--. ...+.|.+|+. .+|.|+=... .++ ++..+.|||++.
T Consensus 24 v~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~--~~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 24 VHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQ--GHR----IMVMRSHCHQPD 74 (87)
T ss_dssp EETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEE--TTE----EEECSCCSSCCC
T ss_pred EECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEc--CCC----EECCCCcCCCCc
Confidence 567776554211 12357999986 4899974332 222 346789999753
No 6
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=27.58 E-value=34 Score=29.78 Aligned_cols=13 Identities=46% Similarity=1.068 Sum_probs=10.8
Q ss_pred EecccCCCCCCCC
Q 022760 152 YKGSHNHPKPTST 164 (292)
Q Consensus 152 Y~G~HnH~~P~~t 164 (292)
-+|.|+||.|...
T Consensus 148 aKG~HDHpRPe~k 160 (174)
T 1odh_A 148 SKGEHDHPRPETK 160 (174)
T ss_dssp EECCCCSCCCCCH
T ss_pred cccccCCCCCCCc
Confidence 3699999999873
No 7
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=25.97 E-value=16 Score=28.94 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=20.8
Q ss_pred ccccCCCCcc-ccccCccccCCCCC
Q 022760 267 DIDILDDGYR-WRKYGQKVVKGNPN 290 (292)
Q Consensus 267 ~~di~dDGyr-WRKYGQK~VKGnp~ 290 (292)
.+-+++.||. |++.|-.+++++|+
T Consensus 109 ~v~~l~GG~~~W~~~g~p~~~~~~~ 133 (137)
T 1qxn_A 109 TIYNSEGGMDKWLEEGLPSLDRSHH 133 (137)
T ss_dssp CEEEESSCHHHHHHTTCCEECCCCC
T ss_pred ceEEEcCcHHHHHHCCCCccccccc
Confidence 4567899995 99999999999986
No 8
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=19.40 E-value=22 Score=21.68 Aligned_cols=8 Identities=50% Similarity=1.090 Sum_probs=6.4
Q ss_pred CCCccCCC
Q 022760 124 SYFKCTFP 131 (292)
Q Consensus 124 sYYkCt~~ 131 (292)
.|||||+.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999863
No 9
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=14.43 E-value=22 Score=33.24 Aligned_cols=11 Identities=36% Similarity=1.334 Sum_probs=9.1
Q ss_pred CCccccccCcc
Q 022760 273 DGYRWRKYGQK 283 (292)
Q Consensus 273 DGyrWRKYGQK 283 (292)
=||+||.+|-+
T Consensus 114 YG~QwR~~~~~ 124 (294)
T 3kgb_A 114 YGFQWRHFGAR 124 (294)
T ss_dssp HHHHHHSBTCC
T ss_pred cchhhhcCCCc
Confidence 48999999865
No 10
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=13.52 E-value=22 Score=33.28 Aligned_cols=12 Identities=33% Similarity=1.102 Sum_probs=9.6
Q ss_pred CCCccccccCcc
Q 022760 272 DDGYRWRKYGQK 283 (292)
Q Consensus 272 dDGyrWRKYGQK 283 (292)
-=||+||.+|-+
T Consensus 116 vYG~QwR~~~~~ 127 (295)
T 3ed7_A 116 VYGFQWRHFGAE 127 (295)
T ss_dssp CTHHHHHHBTCC
T ss_pred chhhhhhccCCc
Confidence 358999999865
Done!