BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022761
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Paratuberculosis
Length = 291
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 29/178 (16%)
Query: 28 ADITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGILATSSR 87
+ +R ++E ++DL SV +F D + S +LINNAGI+A
Sbjct: 53 GEAAARTMAGQVEVRELDLQDLSSVRRFADGV----------SGADVLINNAGIMAVPYA 102
Query: 88 LTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVP---SRIVNVTSFTHRNVFNAQVNNET 144
LT +G++ + TN++G F N +P R+V V+S H + ++N E
Sbjct: 103 LTVDGFESQIGTNHLGHF--------ALTNLLLPRLTDRVVTVSSMAH---WPGRINLED 151
Query: 145 ITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNI 202
+ RS+ Y Y SKL L+F+ EL R L S + +AA PG TN+
Sbjct: 152 LN----WRSRRYSPWLAYSQSKLANLLFTSELQRRLTAAGS-PLRALAAHPGYSHTNL 204
>pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZJZ|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK0|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZK1|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK2|A Chain A, Orthorhombic Crystal Structure Of The Apo-Form Of
R-Specific Alcohol Dehydrogenase (Mutant G37d) From
Lactobacillus Brevis
pdb|1ZK3|A Chain A, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|B Chain B, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|C Chain C, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|D Chain D, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|E Chain E, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|F Chain F, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|G Chain G, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|H Chain H, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
Length = 251
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 29/192 (15%)
Query: 38 RLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGILATSS--RLTPEGYDQ 95
+++ FQ D S K D+ ++ + L+NNAGI S T + +
Sbjct: 55 QIQFFQHDSSDEDGWTKLFDATEKAF------GPVSTLVNNAGIAVNKSVEETTTAEWRK 108
Query: 96 MMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSFTHRNVFNAQVNNETITGKFFLRSKC 155
+++ N G FF N + + I+N++S E G
Sbjct: 109 LLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI------------EGFVGD------- 149
Query: 156 YPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNIMREVPSFLSLMAF 215
P Y SK + I S + L K V V PG +KT ++ ++P M+
Sbjct: 150 -PSLGAYNASKGAVRIMSKSAALDCAL-KDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQ 207
Query: 216 TVLKLLGLLQSP 227
+G + P
Sbjct: 208 RTKTPMGHIGEP 219
>pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh)
(Apoenyzme) From Lactobacillus Brevis
pdb|1ZK4|A Chain A, Structure Of R-specific Alcohol Dehydrogenase (wildtype)
From Lactobacillus Brevis In Complex With Acetophenone
And Nadp
Length = 251
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 29/192 (15%)
Query: 38 RLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGILATSS--RLTPEGYDQ 95
+++ FQ D S K D+ ++ + L+NNAGI S T + +
Sbjct: 55 QIQFFQHDSSDEDGWTKLFDATEKAF------GPVSTLVNNAGIAVNKSVEETTTAEWRK 108
Query: 96 MMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSFTHRNVFNAQVNNETITGKFFLRSKC 155
+++ N G FF N + + I+N++S E G
Sbjct: 109 LLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI------------EGFVGD------- 149
Query: 156 YPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNIMREVPSFLSLMAF 215
P Y SK + I S + L K V V PG +KT ++ ++P M+
Sbjct: 150 -PSLGAYNASKGAVRIMSKSAALDCAL-KDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQ 207
Query: 216 TVLKLLGLLQSP 227
+G + P
Sbjct: 208 RTKTPMGHIGEP 219
>pdb|3ICC|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis At 1.87 A
Resolution
pdb|3ICC|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis At 1.87 A
Resolution
Length = 255
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 30/194 (15%)
Query: 17 GRSSHLLSETMADITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLI 76
G ET+ +I S A + +L S V SL L + + +LI
Sbjct: 39 GNRKEEAEETVYEIQSNGGSAF--SIGANLESLHGVEALYSSLDNELQNRTGSTKFDILI 96
Query: 77 NNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSFTHRN 134
NNAGI + T + +D+ +S N FF ++ SRI+N++S R
Sbjct: 97 NNAGIGPGAFIEETTEQFFDRXVSVNAKAPFFIIQQALSRLRDN---SRIINISSAATR- 152
Query: 135 VFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAAD 194
P Y +K + ++ L + LG +R ++V A
Sbjct: 153 -------------------ISLPDFIAYSXTKGAINTXTFTLAKQLG---ARGITVNAIL 190
Query: 195 PGVVKTNIMREVPS 208
PG VKT+ E+ S
Sbjct: 191 PGFVKTDXNAELLS 204
>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum
Length = 285
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 42/191 (21%)
Query: 69 HSSIQLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVN 126
H ++ +L+NNAGI + R+ + ++ ++ TN F+ N+ RI+N
Sbjct: 119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRY-GRIIN 177
Query: 127 VTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSR 186
++S Q N Y SK ++ F+ L + L SR
Sbjct: 178 ISSIVGLTGNVGQAN--------------------YSSSKAGVIGFTKSLAKELA---SR 214
Query: 187 HVSVIAADPGV------------VKTNIMREVPSFLSLMAFTVLKLLGLLQSPEKG-INS 233
+++V A PG +K NI+ +P+ V L L S + G IN
Sbjct: 215 NITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPEEVANLACFLSSDKSGYING 274
Query: 234 ---VLDAALAP 241
V+D L+P
Sbjct: 275 RVFVIDGGLSP 285
>pdb|4AFN|A Chain A, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AFN|B Chain B, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AFN|C Chain C, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AFN|D Chain D, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AG3|A Chain A, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
pdb|4AG3|B Chain B, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
pdb|4AG3|C Chain C, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
pdb|4AG3|D Chain D, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
Length = 269
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 32/166 (19%)
Query: 44 VDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGILATS--SRLTPEGYDQMMSTNY 101
+D+SS +SV + +QQ L +++NNAGI + R+ + + +++TN
Sbjct: 83 LDVSSDESVAATLEHIQQHL------GQPLIVVNNAGITRDNLLVRMKDDEWFDVVNTN- 135
Query: 102 IGAFFXXXXXXXXXXNSPVPSRIVNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARI 161
+ + + RI+N+ S Q N
Sbjct: 136 LNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTN-------------------- 175
Query: 162 YEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNIMREVP 207
Y +K L F+ L R +G SR ++V A PG + T++ RE+P
Sbjct: 176 YAAAKAGLEGFTRALAREVG---SRAITVNAVAPGFIDTDMTRELP 218
>pdb|2BD0|A Chain A, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|B Chain B, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|C Chain C, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|D Chain D, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
Length = 244
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 22 LLSETMADITS-----RNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLI 76
L S T AD+ R + A + D+S V + + + + I L+
Sbjct: 38 LSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE------RYGHIDCLV 91
Query: 77 NNAGI--LATSSRLTPEGYDQMMSTNYIGAFF 106
NNAG+ S LT E +D M+TN G FF
Sbjct: 92 NNAGVGRFGALSDLTEEDFDYTMNTNLKGTFF 123
>pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|B Chain B, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|C Chain C, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|D Chain D, Carbonyl Reductase Complexed With Nadph And 2-Propanol
Length = 244
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 39/193 (20%)
Query: 23 LSETMADITSRNKD-ARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGI 81
++ T +D+ S K+ +E VDL + + K + + LL+NNA +
Sbjct: 37 VTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGI----------GPVDLLVNNAAL 86
Query: 82 LATSS--RLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSFTHRNVFNAQ 139
+ +T E +D+ S N F N VP IVNV+S F
Sbjct: 87 VIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF--- 143
Query: 140 VNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVK 199
P Y +K + + + + LG K R SV +P VV
Sbjct: 144 -----------------PNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSV---NPTVVL 183
Query: 200 TNIMREV---PSF 209
T++ ++V P F
Sbjct: 184 TDMGKKVSADPEF 196
>pdb|1IPE|A Chain A, Tropinone Reductase-Ii Complexed With Nadph
pdb|1IPE|B Chain B, Tropinone Reductase-Ii Complexed With Nadph
pdb|1IPF|A Chain A, Tropinone Reductase-Ii Complexed With Nadph And Tropinone
pdb|1IPF|B Chain B, Tropinone Reductase-Ii Complexed With Nadph And Tropinone
Length = 259
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 33 RNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDS---DMHSSIQLLINNAGIL--ATSSR 87
R+K ++EA DLSS S +Q L+++ H + +L+NNAGI+ +
Sbjct: 53 RSKGFKVEASVCDLSS--------RSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKD 104
Query: 88 LTPEGYDQMMSTNYIGAF 105
T E Y +MS N+ A+
Sbjct: 105 YTVEDYSLIMSINFEAAY 122
>pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And
Pseudotropine
pdb|2AE2|B Chain B, Tropinone Reductase-Ii Complexed With Nadp+ And
Pseudotropine
pdb|2AE1|A Chain A, Tropinone Reductase-Ii
Length = 260
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 33 RNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDS---DMHSSIQLLINNAGIL--ATSSR 87
R+K ++EA DLSS S +Q L+++ H + +L+NNAGI+ +
Sbjct: 54 RSKGFKVEASVCDLSS--------RSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKD 105
Query: 88 LTPEGYDQMMSTNYIGAF 105
T E Y +MS N+ A+
Sbjct: 106 YTVEDYSLIMSINFEAAY 123
>pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-nitro-inden-1-one
pdb|1DOH|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-nitro-inden-1-one
pdb|1G0N|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1G0N|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1G0O|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|D Chain D, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
Length = 283
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 84/191 (43%), Gaps = 37/191 (19%)
Query: 19 SSHLLSETMADITSRNKDARLEAFQVDLSSFQSVLK-FKDSLQQWLLDSDMHSSIQLLIN 77
S+ E +A I DA + ++ + +++ F+++++ + + ++ +
Sbjct: 63 STESAEEVVAAIKKNGSDA--ACVKANVGVVEDIVRMFEEAVK-------IFGKLDIVCS 113
Query: 78 NAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSFTHRNV 135
N+G+++ +TPE +D++ + N G FF V ++ H +
Sbjct: 114 NSGVVSFGHVKDVTPEEFDRVFTINTRGQFF------------------VAREAYKHLEI 155
Query: 136 FNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADP 195
+ +ITG+ +K P +Y SK + F+ + ++ DK V+V+A P
Sbjct: 156 GGRLILMGSITGQ----AKAVPKHAVYSGSKGAIETFARCMAIDM-ADKKITVNVVA--P 208
Query: 196 GVVKTNIMREV 206
G +KT++ V
Sbjct: 209 GGIKTDMYHAV 219
>pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
pdb|1YBV|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
Length = 283
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 84/191 (43%), Gaps = 37/191 (19%)
Query: 19 SSHLLSETMADITSRNKDARLEAFQVDLSSFQSVLK-FKDSLQQWLLDSDMHSSIQLLIN 77
S+ E +A I DA + ++ + +++ F+++++ + + ++ +
Sbjct: 63 STESAEEVVAAIKKNGSDA--ACVKANVGVVEDIVRMFEEAVK-------IFGKLDIVCS 113
Query: 78 NAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSFTHRNV 135
N+G+++ +TPE +D++ + N G FF V ++ H +
Sbjct: 114 NSGVVSFGHVKDVTPEEFDRVFTINTRGQFF------------------VAREAYKHLEI 155
Query: 136 FNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADP 195
+ +ITG+ +K P +Y SK + F+ + ++ DK V+V+A P
Sbjct: 156 GGRLILMGSITGQ----AKAVPKHAVYSGSKGAIETFARCMAIDM-ADKKITVNVVA--P 208
Query: 196 GVVKTNIMREV 206
G +KT++ V
Sbjct: 209 GGIKTDMYHAV 219
>pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL
Dehydrogenase From Clostridium Thermocellum
Length = 247
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 26/149 (17%)
Query: 67 DMHSSIQLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRI 124
D I +L+NNAGI + +++ + +D +++TN A+ +I
Sbjct: 79 DAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQK-SGKI 137
Query: 125 VNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDK 184
+N+TS Q N Y SK L+ F+ + +
Sbjct: 138 INITSIAGIIGNAGQAN--------------------YAASKAGLIGFTKSIAKEFA--- 174
Query: 185 SRHVSVIAADPGVVKTNIMREVPSFLSLM 213
++ + A PG++KT++ +P + M
Sbjct: 175 AKGIYCNAVAPGIIKTDMTDVLPDKVKEM 203
>pdb|2ET6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candida
Tropicalis Peroxisomal Multifunctional Enzyme Type 2
Length = 604
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 67 DMHSSIQLLINNAGILATSS--RLTPEGYDQMMSTNYIGAF 105
D + +I +L+NNAGIL S +++ + +D + + IG F
Sbjct: 391 DKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTF 431
>pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|B Chain B, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|C Chain C, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|D Chain D, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|E Chain E, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|F Chain F, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|G Chain G, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|H Chain H, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
Length = 246
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 26/138 (18%)
Query: 67 DMHSSIQLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRI 124
D+ + +L+NNAG+ + R+ E +D +++TN G F RI
Sbjct: 78 DVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRI 136
Query: 125 VNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDK 184
VN+ S +TG P Y +K ++ + + L
Sbjct: 137 VNIASVVG------------VTGN--------PGQANYVAAKAGVIGLTKTSAKELA--- 173
Query: 185 SRHVSVIAADPGVVKTNI 202
SR+++V A PG + T++
Sbjct: 174 SRNITVNAIAPGFIATDM 191
>pdb|4HP8|A Chain A, Crystal Structure Of A Putative 2-Deoxy-D-Gluconate
3-Dehydrogenase From Agrobacterium Tumefaciens (Target
Efi-506435) With Bound Nadp
pdb|4HP8|B Chain B, Crystal Structure Of A Putative 2-Deoxy-D-Gluconate
3-Dehydrogenase From Agrobacterium Tumefaciens (Target
Efi-506435) With Bound Nadp
Length = 247
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 33 RNKDARLEAFQVDLSSFQSVL-KFKDSLQQWLLDSDMHSSIQLLINNAGIL--ATSSRLT 89
R D L+ D + ++L F D L DS + +L+NNAGI+ A S +
Sbjct: 42 RAPDETLDIIAKDGGNASALLIDFADPLAA--KDSFTDAGFDILVNNAGIIRRADSVEFS 99
Query: 90 PEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSF 130
+D++M N FF ++VN+ S
Sbjct: 100 ELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASL 140
>pdb|1UZL|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZL|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 81/198 (40%), Gaps = 44/198 (22%)
Query: 57 DSLQQWLLDSDMHSS-IQLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXX 113
D++ + + H +++L++NAG+ A + R+T E ++++++ N GAF
Sbjct: 66 DAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAF-------- 117
Query: 114 XXXNSPVPSRIVNVTSFT-HRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIF 172
R+ S + RN F + +++G + + ++ Y SK ++
Sbjct: 118 ---------RVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQAN-----YAASKAGVIGM 163
Query: 173 SYELHRNLGLDKSRHVSVIAADPGVVKTNIMREVPSFLSLMAFTVLKLLGLLQSPEKGIN 232
+ + R L +V+ PG + T++ R + + A + P K +
Sbjct: 164 ARSIAREL---SKANVTANVVAPGYIDTDMTRALDERIQQGALQFI--------PAKRVG 212
Query: 233 SVLDAALAPPETSGVYFF 250
+ P E +GV F
Sbjct: 213 T-------PAEVAGVVSF 223
>pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l
pdb|2NTN|B Chain B, Crystal Structure Of Maba-c60v/g139a/s144l
Length = 267
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 49/225 (21%)
Query: 30 ITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSS-IQLLINNAGILATS--S 86
+T R A F V++ S D++ + + H +++L++NAG+ A +
Sbjct: 64 VTHRGSGAPKGLFGVEVDVTDS-----DAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLM 118
Query: 87 RLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSFT-HRNVFNAQVNNETI 145
R+T E ++++++ N GAF R+ S + RN F + ++
Sbjct: 119 RMTEEKFEKVINANLTGAF-----------------RVAQRASRSMQRNKFGRMIFIASV 161
Query: 146 TGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNIMRE 205
+G + + ++ Y SK ++ + + R L +V+ PG + T++ R
Sbjct: 162 SGLWGIGNQAN-----YAASKAGVIGMARSIAREL---SKANVTANVVAPGYIDTDMTRA 213
Query: 206 VPSFLSLMAFTVLKLLGLLQSPEKGINSVLDAALAPPETSGVYFF 250
+ + A + P K + + P E +GV F
Sbjct: 214 LDERIQQGALQFI--------PAKRVGT-------PAEVAGVVSF 243
>pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZM|B Chain B, Maba From Mycobacterium Tuberculosis
pdb|1UZN|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZN|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 49/225 (21%)
Query: 30 ITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSS-IQLLINNAGILATS--S 86
+T R A F V++ S D++ + + H +++L++NAG+ A +
Sbjct: 44 VTHRGSGAPKGLFGVEVDVTDS-----DAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLM 98
Query: 87 RLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSFT-HRNVFNAQVNNETI 145
R+T E ++++++ N GAF R+ S + RN F + ++
Sbjct: 99 RMTEEKFEKVINANLTGAF-----------------RVAQRASRSMQRNKFGRMIFIGSV 141
Query: 146 TGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNIMRE 205
+G + + ++ Y SK ++ + + R L +V+ PG + T++ R
Sbjct: 142 SGLWGIGNQAN-----YAASKAGVIGMARSIAREL---SKANVTANVVAPGYIDTDMTRA 193
Query: 206 VPSFLSLMAFTVLKLLGLLQSPEKGINSVLDAALAPPETSGVYFF 250
+ + A + P K + + P E +GV F
Sbjct: 194 LDERIQQGALQFI--------PAKRVGT-------PAEVAGVVSF 223
>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|B Chain B, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|C Chain C, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|D Chain D, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
Length = 279
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 64/182 (35%), Gaps = 28/182 (15%)
Query: 23 LSETMADITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGIL 82
+ E A+ S L ++ DLS+ + +L +++ HS + + INNAG+
Sbjct: 69 IEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR------SQHSGVDICINNAGLA 122
Query: 83 ATSSRL--TPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPV-PSRIVNVTSFTHRNVFNAQ 139
+ L + G+ M + N + V I+N+ S + V
Sbjct: 123 RPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLS 182
Query: 140 VNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVK 199
V + Y +K + + L + L + H+ PGVV+
Sbjct: 183 VTH------------------FYSATKYAVTALTEGLRQEL-REAQTHIRATCISPGVVE 223
Query: 200 TN 201
T
Sbjct: 224 TQ 225
>pdb|2CFC|A Chain A, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|B Chain B, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|C Chain C, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|D Chain D, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
Length = 250
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 70 SSIQLLINNAGILATSS----RLTP-EGYDQMMSTNYIGAFF 106
+I +L+NNAGI S TP E +D++M+ N G F
Sbjct: 79 GAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFL 120
>pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|B Chain B, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|C Chain C, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|D Chain D, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
Length = 303
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 35 KDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAG--ILATSSRLTPEG 92
K AR+ Q ++ + + V ++L + LD+ I L+NN G L+ + ++ +G
Sbjct: 70 KQARVIPIQCNIRNEEEV----NNLVKSTLDT--FGKINFLVNNGGGQFLSPAEHISSKG 123
Query: 93 YDQMMSTNYIGAFF 106
+ ++ TN G F+
Sbjct: 124 WHAVLETNLTGTFY 137
>pdb|3AY6|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|C Chain C, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|D Chain D, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
Length = 269
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 70 SSIQLLINNAGIL--ATSSRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNV 127
++ ++INNAG+ S L+ + +++++ TN GAF + + ++N+
Sbjct: 92 GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINM 151
Query: 128 TS 129
+S
Sbjct: 152 SS 153
>pdb|3AY7|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 G259a Mutant
pdb|3AY7|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 G259a Mutant
Length = 269
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 70 SSIQLLINNAGIL--ATSSRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNV 127
++ ++INNAG+ S L+ + +++++ TN GAF + + ++N+
Sbjct: 92 GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINM 151
Query: 128 TS 129
+S
Sbjct: 152 SS 153
>pdb|3AUS|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Ligand-Free Form
pdb|3AUS|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Ligand-Free Form
pdb|3AUT|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With Nadh
pdb|3AUT|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With Nadh
pdb|3AUU|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With D-Glucose
pdb|3AUU|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With D-Glucose
Length = 269
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 70 SSIQLLINNAGIL--ATSSRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNV 127
++ ++INNAG+ S L+ + +++++ TN GAF + + ++N+
Sbjct: 92 GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINM 151
Query: 128 TS 129
+S
Sbjct: 152 SS 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,321,539
Number of Sequences: 62578
Number of extensions: 265986
Number of successful extensions: 639
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 36
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)